Citrus Sinensis ID: 015093
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | 2.2.26 [Sep-21-2011] | |||||||
| Q40471 | 413 | Eukaryotic initiation fac | N/A | no | 1.0 | 1.0 | 0.927 | 0.0 | |
| Q40468 | 413 | Eukaryotic initiation fac | N/A | no | 1.0 | 1.0 | 0.924 | 0.0 | |
| P41381 | 413 | Eukaryotic initiation fac | N/A | no | 1.0 | 1.0 | 0.903 | 0.0 | |
| P41382 | 413 | Eukaryotic initiation fac | N/A | no | 1.0 | 1.0 | 0.903 | 0.0 | |
| P41379 | 413 | Eukaryotic initiation fac | N/A | no | 1.0 | 1.0 | 0.907 | 0.0 | |
| Q40470 | 413 | Eukaryotic initiation fac | N/A | no | 1.0 | 1.0 | 0.900 | 0.0 | |
| P35683 | 414 | Eukaryotic initiation fac | yes | no | 1.0 | 0.997 | 0.908 | 0.0 | |
| Q40467 | 413 | Eukaryotic initiation fac | N/A | no | 1.0 | 1.0 | 0.900 | 0.0 | |
| Q40465 | 413 | Eukaryotic initiation fac | N/A | no | 1.0 | 1.0 | 0.903 | 0.0 | |
| Q6Z2Z4 | 414 | Eukaryotic initiation fac | yes | no | 1.0 | 0.997 | 0.898 | 0.0 |
| >sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/413 (92%), Positives = 398/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G APEGS FDAR +DS M LL+ EGQDFF SYDEVY SFD+MGLKENLLRGIYAYGF
Sbjct: 1 MAGAAPEGSQFDARQYDSKMTELLNAEGQDFFTSYDEVYHSFDAMGLKENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE L CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRILS+GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
D+I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGV+INFVT DD+RML+DIQRFYNVVIEELPANVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYNVVIEELPANVADLL 413
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Nicotiana tabacum (taxid: 4097) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/413 (92%), Positives = 400/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G APEGS FDAR FD+ MN LLS +GQDFF SYDEVYDSFD+MGL+ENLLRGIYAYGF
Sbjct: 1 MAGAAPEGSQFDARQFDTKMNELLSADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL YE L+CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYELLECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKV ACVGGTSVREDQRILS+GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVTACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
D+I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVT+DD+RML+DIQRFYNVVIEELPANVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVVIEELPANVADLL 413
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Nicotiana tabacum (taxid: 4097) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/413 (90%), Positives = 400/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M +AP+G+ FDAR +DS MN+LL+ +G+DFF SYDEVYDSFD+MGL+ENLLRGIYAYGF
Sbjct: 1 MARLAPDGAQFDARQYDSKMNDLLAADGKDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY +QCQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL+AGVHV+VGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAAGVHVIVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DY+RMFVLDEADEMLSRGFKDQIYDIFQ LP K+QVGVFSATMPPEAL+ITRKFMNKPVR
Sbjct: 181 DYLRMFVLDEADEMLSRGFKDQIYDIFQMLPTKVQVGVFSATMPPEALDITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
+RDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 TRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVT DD+RML DIQ+FYNV+IEELP+NVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Nicotiana tabacum (taxid: 4097) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/413 (90%), Positives = 398/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FDAR +D+ M LL E ++FF SYDEVYDSFD+MGL+ENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY ++CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL +GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
D+I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRD++TLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVT+DD+RML+DIQ+FYNVVIEELPANVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANVADLL 413
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Nicotiana tabacum (taxid: 4097) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1 | Back alignment and function description |
|---|
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/413 (90%), Positives = 395/413 (95%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G APEGS FDAR FD+ M LL E ++FF SYDEVYDSFD+MGL+ENLLRGIYAYGF
Sbjct: 1 MAGSAPEGSQFDARQFDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY ++CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL +GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
D+I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAIN VT+DD+RML DIQ+FYNVVIEELPANVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Nicotiana plumbaginifolia (taxid: 4092) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicotiana tabacum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/413 (90%), Positives = 397/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FDAR +D+ M LL E ++FF SYDEVYDSFD+MGL+ENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY ++CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL +GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
D+I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRD++TLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
+RDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 TRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFV +DD+RML+DIQRFYNVVIEELPANVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYNVVIEELPANVADLL 413
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Nicotiana tabacum (taxid: 4097) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/414 (90%), Positives = 398/414 (96%), Gaps = 1/414 (0%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSE-EGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYG 59
M G+APEGS FDA+ +DS M LL++ E ++FF SYDEV++SFD MGL+ENLLRGIYAYG
Sbjct: 1 MAGMAPEGSQFDAKHYDSKMQELLNQGETEEFFTSYDEVHESFDDMGLQENLLRGIYAYG 60
Query: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119
FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY ++CQALVLAPTRE
Sbjct: 61 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYAVVECQALVLAPTRE 120
Query: 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLR 179
LAQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL++GVHVVVGTPGRVFDMLRRQSLR
Sbjct: 121 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLR 180
Query: 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPV 239
PDYI+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPV
Sbjct: 181 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPV 240
Query: 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM 299
RILVKRDELTLEGIKQF+VNV+KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTD+M
Sbjct: 241 RILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300
Query: 300 RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359
R RDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ
Sbjct: 301 RGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360
Query: 360 PENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
PENYLHRIGRSGRFGRKGVAINFVTRDD+RML DIQRFYNVVIEELPANVADL+
Sbjct: 361 PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/413 (90%), Positives = 397/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FDAR +D+ M LL E ++FF SYDEVYDSFD+MGL+ENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDAKMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY ++CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL +GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
D+I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFM+KPVR
Sbjct: 181 DHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRD++TLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVT+DD+RML DIQ+FYNVVIEELPANVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Nicotiana tabacum (taxid: 4097) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/413 (90%), Positives = 394/413 (95%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FDAR +D+ M LL E Q+FF SYDEVY+SFD+MGL+ENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDAKMTELLGTEQQEFFTSYDEVYESFDAMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY ++CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL +GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
D I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
RDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 GRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIG SGRFGRKGV+INFVT+DD+RML DIQ+FYNVVIEELPANVADL+
Sbjct: 361 ENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Nicotiana tabacum (taxid: 4097) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/414 (89%), Positives = 397/414 (95%), Gaps = 1/414 (0%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSE-EGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYG 59
M G+APEGS FDA+ +DS M LL + + ++FF SYDEV++SFD MGL+ENLLRGIYAYG
Sbjct: 1 MAGMAPEGSQFDAKHYDSKMQELLHQGDNEEFFTSYDEVFESFDDMGLQENLLRGIYAYG 60
Query: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119
FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY ++CQ+LVLAPTRE
Sbjct: 61 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRE 120
Query: 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLR 179
LAQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL++GVHVVVGTPGRVFDMLRRQSLR
Sbjct: 121 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLR 180
Query: 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPV 239
PD+I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPV
Sbjct: 181 PDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPV 240
Query: 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM 299
RILVKRDELTLEGIKQF+VNV+KE+WKLDTLCDLYETLAITQSVIFVNTRRKVDWLTD+M
Sbjct: 241 RILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300
Query: 300 RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359
RSRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ
Sbjct: 301 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 360
Query: 360 PENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
PENYLHRIGRSGRFGRKGVAINFVTRDD+RML DIQRFYNV IEELPANVADL+
Sbjct: 361 PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414
|
ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| 224142804 | 413 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.924 | 0.0 | |
| 224073500 | 413 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.922 | 0.0 | |
| 356530401 | 413 | PREDICTED: eukaryotic initiation factor | 1.0 | 1.0 | 0.920 | 0.0 | |
| 225442221 | 413 | PREDICTED: eukaryotic initiation factor | 1.0 | 1.0 | 0.927 | 0.0 | |
| 449458151 | 413 | PREDICTED: eukaryotic initiation factor | 1.0 | 1.0 | 0.929 | 0.0 | |
| 283049400 | 413 | DEAD-box RNA helicase-like protein [Prun | 1.0 | 1.0 | 0.920 | 0.0 | |
| 307135861 | 413 | helicase [Cucumis melo subsp. melo] | 1.0 | 1.0 | 0.924 | 0.0 | |
| 363807008 | 413 | uncharacterized protein LOC100786735 [Gl | 1.0 | 1.0 | 0.915 | 0.0 | |
| 2500517 | 413 | RecName: Full=Eukaryotic initiation fact | 1.0 | 1.0 | 0.927 | 0.0 | |
| 297738640 | 413 | unnamed protein product [Vitis vinifera] | 1.0 | 1.0 | 0.920 | 0.0 |
| >gi|224142804|ref|XP_002324737.1| predicted protein [Populus trichocarpa] gi|118481206|gb|ABK92554.1| unknown [Populus trichocarpa] gi|222866171|gb|EEF03302.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/413 (92%), Positives = 402/413 (97%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FDAR FDS MN LL+ +GQDFF SYDEVYD+FD+MGLKENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQFDSKMNELLTTDGQDFFTSYDEVYDTFDAMGLKENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY+ ++CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYDVVECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DYI+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVT+DD+RML+DIQRFYNV +EELP+NVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVTVEELPSNVADLL 413
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073500|ref|XP_002304104.1| predicted protein [Populus trichocarpa] gi|118484805|gb|ABK94270.1| unknown [Populus trichocarpa] gi|222841536|gb|EEE79083.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/413 (92%), Positives = 401/413 (97%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FD++ +D+ MN+LL+ +GQDFF SYDEVYD+FDSMGL+ENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDSKQYDAKMNDLLANDGQDFFTSYDEVYDTFDSMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY +QCQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL AGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DYI+MFVLDEADEMLSRGFKDQIYDIFQ LP K+QVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQFHVNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVTRDDDRML DIQ+FYNVVIEELP+NVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLFDIQKFYNVVIEELPSNVADLL 413
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530401|ref|XP_003533770.1| PREDICTED: eukaryotic initiation factor 4A-15-like isoform 1 [Glycine max] gi|356530403|ref|XP_003533771.1| PREDICTED: eukaryotic initiation factor 4A-15-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/413 (92%), Positives = 400/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M GIAPEGS FDAR +D+ MN LL+ +GQDFF SYDEVYDSFD+MGL+ENLLRGIYAYGF
Sbjct: 1 MAGIAPEGSQFDARQYDTKMNELLTSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY +CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSVTECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRILS+GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DYI+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQFHVNV+KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVT+DD++ML DIQ+FYNVVIEELP+NVA+L+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVVIEELPSNVAELL 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442221|ref|XP_002277703.1| PREDICTED: eukaryotic initiation factor 4A-2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/413 (92%), Positives = 398/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G APEGS FDAR FDS MN+LLS +G+DFF SYDEVYD+FDSMGL ENLLRGIYAYGF
Sbjct: 1 MAGQAPEGSQFDARQFDSKMNDLLSADGEDFFTSYDEVYDTFDSMGLVENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY +QCQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVQCQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GV+VHACVGGTSVREDQRIL GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVRVHACVGGTSVREDQRILQTGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DYI+MFVLDEADEMLSRGFKDQIYDIFQ LP K+QVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQFHVNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVTRDD+RML DIQRFYNVVIEELP+NVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPSNVADLL 413
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458151|ref|XP_004146811.1| PREDICTED: eukaryotic initiation factor 4A-8-like [Cucumis sativus] gi|449476633|ref|XP_004154791.1| PREDICTED: eukaryotic initiation factor 4A-8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/413 (92%), Positives = 399/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FDAR +DS MN LLS +GQDFF SYDEVYDSFDSMGL+ENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY +QCQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL AGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DYIRMFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKE+WKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVT +D+RML DIQ+FYNVVIEELPANVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 413
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|283049400|gb|ADB07168.1| DEAD-box RNA helicase-like protein [Prunus persica] gi|283049402|gb|ADB07169.1| DEAD-box RNA helicase-like protein [Prunus persica] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/413 (92%), Positives = 400/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FDA+ +D+ M+ LLS +GQ+FF SYDEVY+SFDSMGL+ENLLRGIYAYGF
Sbjct: 1 MAGVAPEGSQFDAKQYDTKMSELLSTDGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY +QCQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYAVVQCQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL AGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DYI+MFVLDEADEMLSRGFKDQIYDIFQ LP K+QVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVTRDD+RML DIQRFYNVVIEELP+NVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDERMLYDIQRFYNVVIEELPSNVADLL 413
|
Source: Prunus persica Species: Prunus persica Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307135861|gb|ADN33729.1| helicase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/413 (92%), Positives = 399/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FDAR +D+ MN LLS +GQDFF SYDEVYDSFDSMGL+ENLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY +QCQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL AGVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DYIRMFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKE+WKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVT +D+RML DIQ+FYNV+IEELPANVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVIIEELPANVADLL 413
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807008|ref|NP_001242064.1| uncharacterized protein LOC100786735 [Glycine max] gi|255635856|gb|ACU18275.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/413 (91%), Positives = 400/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FDAR +D+ MN LL+ +GQDFF SYDEVYDSFD+MGL++NLLRGIYAYGF
Sbjct: 1 MAGLAPEGSQFDARQYDTKMNELLTSDGQDFFTSYDEVYDSFDAMGLQDNLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY +CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSVTECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRILS+GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DYI+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQFHVNV+KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVTRDD++ML DIQ+FYNV+IEELP+NVA+L+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDEKMLFDIQKFYNVIIEELPSNVAELL 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2500517|sp|Q40471.1|IF4A9_TOBAC RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9; AltName: Full=ATP-dependent RNA helicase eIF4A-9 gi|485951|emb|CAA55736.1| unnamed protein product [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/413 (92%), Positives = 398/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G APEGS FDAR +DS M LL+ EGQDFF SYDEVY SFD+MGLKENLLRGIYAYGF
Sbjct: 1 MAGAAPEGSQFDARQYDSKMTELLNAEGQDFFTSYDEVYHSFDAMGLKENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE L CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRILS+GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
D+I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGV+INFVT DD+RML+DIQRFYNVVIEELPANVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYNVVIEELPANVADLL 413
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738640|emb|CBI27885.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/413 (92%), Positives = 400/413 (96%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
M G+APEGS FD R++D+ M LLS +GQDFF SYDEVYDSFDSMGL+ENLLRGIYAYGF
Sbjct: 1 MAGVAPEGSQFDTRNYDAKMTELLSTDGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY ++CQALVLAPTREL
Sbjct: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
AQQIEKVMRALGDY+GVKVHACVGGTSVREDQRILS+GVHVVVGTPGRVFDMLRRQSLRP
Sbjct: 121 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP 180
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
DYI+MFVLDEADEMLSRGFKDQIYDIFQ LP K+QVGVFSATMPPEALEITRKFMNKPVR
Sbjct: 181 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVR 240
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+MR
Sbjct: 241 ILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 300
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
SRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQP
Sbjct: 301 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQP 360
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENYLHRIGRSGRFGRKGVAINFVTRDD+RML DIQRFYNVVIEELP+NVADL+
Sbjct: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPSNVADLL 413
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| TAIR|locus:2020078 | 412 | EIF4A-2 "eif4a-2" [Arabidopsis | 0.995 | 0.997 | 0.893 | 3.4e-196 | |
| TAIR|locus:2030285 | 414 | AT1G72730 [Arabidopsis thalian | 1.0 | 0.997 | 0.859 | 9.5e-192 | |
| TAIR|locus:2088237 | 415 | EIF4A1 "eukaryotic translation | 0.941 | 0.937 | 0.897 | 1.5e-186 | |
| ZFIN|ZDB-GENE-040426-2802 | 411 | eif4a2 "eukaryotic translation | 0.920 | 0.924 | 0.742 | 1.2e-150 | |
| UNIPROTKB|Q3SZ65 | 407 | EIF4A2 "Eukaryotic initiation | 0.920 | 0.933 | 0.737 | 2.6e-150 | |
| UNIPROTKB|E2R3J1 | 407 | EIF4A2 "Uncharacterized protei | 0.920 | 0.933 | 0.737 | 2.6e-150 | |
| UNIPROTKB|Q14240 | 407 | EIF4A2 "Eukaryotic initiation | 0.920 | 0.933 | 0.737 | 2.6e-150 | |
| UNIPROTKB|A6M930 | 407 | EIF4A2 "Eukaryotic translation | 0.920 | 0.933 | 0.737 | 2.6e-150 | |
| MGI|MGI:106906 | 407 | Eif4a2 "eukaryotic translation | 0.920 | 0.933 | 0.737 | 2.6e-150 | |
| RGD|1309225 | 407 | Eif4a2 "eukaryotic translation | 0.920 | 0.933 | 0.737 | 2.6e-150 |
| TAIR|locus:2020078 EIF4A-2 "eif4a-2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1900 (673.9 bits), Expect = 3.4e-196, P = 3.4e-196
Identities = 370/414 (89%), Positives = 392/414 (94%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQD-FFVSYDEVYDSFDSMGLKENLLRGIYAYG 59
M G APEG+ FD R FD +N +L +GQD FF SYDEV++SFD+MGL+ENLLRGIYAYG
Sbjct: 1 MAGSAPEGTQFDTRQFDQRLNEVL--DGQDEFFTSYDEVHESFDAMGLQENLLRGIYAYG 58
Query: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119
FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY LQCQALVLAPTRE
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRE 118
Query: 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLR 179
LAQQIEKVMRALGDY GVKVHACVGGTSVREDQRIL AGVHVVVGTPGRVFDMLRRQSLR
Sbjct: 119 LAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLR 178
Query: 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPV 239
PD I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFM+KPV
Sbjct: 179 PDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPV 238
Query: 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM 299
RILVKRDELTLEGIKQF+VNV+KE+WKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+M
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298
Query: 300 RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359
RSRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQ
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358
Query: 360 PENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
PENYLHRIGRSGRFGRKGVAINFVT DD RML DIQ+FYNVV+EELP+NVADL+
Sbjct: 359 PENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVADLL 412
|
|
| TAIR|locus:2030285 AT1G72730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1858 (659.1 bits), Expect = 9.5e-192, P = 9.5e-192
Identities = 356/414 (85%), Positives = 390/414 (94%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQD-FFVSYDEVYDSFDSMGLKENLLRGIYAYG 59
M G+A +G+ +D R FD+ MN +L EEG++ F+ +YDEV DSFD+M L+ +LLRGIYAYG
Sbjct: 1 MAGMASDGTQYDPRQFDTKMNAILGEEGEETFYTNYDEVCDSFDAMELQPDLLRGIYAYG 60
Query: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119
FEKPSAIQQRGI+PFCKGLDVIQQAQSGTGKTATFCSG+LQQLD +QCQALVLAPTRE
Sbjct: 61 FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRE 120
Query: 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLR 179
LAQQIEKVMRALGDY+GVK ACVGGTSVREDQR+L +GVHVVVGTPGRVFD+LRRQSLR
Sbjct: 121 LAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLR 180
Query: 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPV 239
D I+MFVLDEADEMLSRGFKDQIYDIFQ LP K+QVGVFSATMPPEALEITRKFMNKPV
Sbjct: 181 ADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPV 240
Query: 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM 299
RILVKRDELTLEGIKQF+VNVDKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+M
Sbjct: 241 RILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 300
Query: 300 RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359
RSRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQ
Sbjct: 301 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 360
Query: 360 PENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
PENYLHRIGRSGRFGRKGVAINF+T +D+RM+ADIQRFYNVV+EELP+NVADL+
Sbjct: 361 PENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVVEELPSNVADLL 414
|
|
| TAIR|locus:2088237 EIF4A1 "eukaryotic translation initiation factor 4A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1809 (641.9 bits), Expect = 1.5e-186, P = 1.5e-186
Identities = 352/392 (89%), Positives = 374/392 (95%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQD-FFVSYDEVYDSFDSMGLKENLLRGIYAYG 59
M G APEG+ FDAR FD +N +L EGQD FF SYD+V++SFD+MGL+ENLLRGIYAYG
Sbjct: 1 MAGSAPEGTQFDARQFDQKLNEVL--EGQDEFFTSYDDVHESFDAMGLQENLLRGIYAYG 58
Query: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119
FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLD+ +QCQALVLAPTRE
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRE 118
Query: 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLR 179
LAQQIEKVMRALGDY+GVKVHACVGGTSVREDQRIL AGVHVVVGTPGRVFDML+RQSLR
Sbjct: 119 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLR 178
Query: 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPV 239
D I+MFVLDEADEMLSRGFKDQIYDIFQ LP KIQVGVFSATMPPEALEITRKFM+KPV
Sbjct: 179 ADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPV 238
Query: 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM 299
RILVKRDELTLEGIKQF+VNV+KEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTD+M
Sbjct: 239 RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298
Query: 300 RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359
RSRDHTVSATHGDMDQN+RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQ
Sbjct: 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQ 358
Query: 360 PENYLHRIGRSGRFGRKGVAINFVTRDDDRML 391
PENYLHRIGRSGRFGRKGVAINFVTRDD+RML
Sbjct: 359 PENYLHRIGRSGRFGRKGVAINFVTRDDERML 390
|
|
| ZFIN|ZDB-GENE-040426-2802 eif4a2 "eukaryotic translation initiation factor 4A, isoform 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1470 (522.5 bits), Expect = 1.2e-150, P = 1.2e-150
Identities = 283/381 (74%), Positives = 325/381 (85%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
+++E+ D+FD M LKE LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTAT
Sbjct: 31 NWNEITDNFDDMNLKETLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT 90
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED-Q 152
F ILQQL+ E + QALVLAPTRELAQQI+KV+ ALGDYMG HAC+GGT+VR + Q
Sbjct: 91 FAISILQQLEIEQKETQALVLAPTRELAQQIQKVILALGDYMGASCHACIGGTNVRNEMQ 150
Query: 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212
++ + H+VVGTPGRVFDML R+ L P +I+MFVLDEADEMLSRGFKDQIY+IFQ L
Sbjct: 151 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLST 210
Query: 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272
IQV + SATMP + LE+T KFM +PVRILVK++ELTLEGIKQF++NV++EEWKLDTLCD
Sbjct: 211 NIQVVLLSATMPADVLEVTTKFMREPVRILVKKEELTLEGIKQFYINVEREEWKLDTLCD 270
Query: 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332
LYETL ITQ+VIF+NTRRKVDWLT++M +RD TVSA HGDMDQ RDIIMREFRSGSSRV
Sbjct: 271 LYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSGSSRV 330
Query: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392
LITTDLLARGIDVQQVSLVINYDLPT ENY+HRIGR GRFGRKGVAINFVT +D R+L
Sbjct: 331 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILR 390
Query: 393 DIQRFYNVVIEELPANVADLI 413
DI+ FYN +EE+P NVADLI
Sbjct: 391 DIETFYNTTVEEMPMNVADLI 411
|
|
| UNIPROTKB|Q3SZ65 EIF4A2 "Eukaryotic initiation factor 4A-II" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
Identities = 281/381 (73%), Positives = 326/381 (85%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
+++E+ D+FD M LKE+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTAT
Sbjct: 27 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT 86
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED-Q 152
F ILQQL+ E + QALVLAPTRELAQQI+KV+ ALGDYMG HAC+GGT+VR + Q
Sbjct: 87 FAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 146
Query: 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212
++ + H+VVGTPGRVFDML R+ L P +I+MFVLDEADEMLSRGFKDQIY+IFQ L
Sbjct: 147 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Query: 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272
IQV + SATMP + LE+T+KFM P+RILVK++ELTLEGIKQF++NV++EEWKLDTLCD
Sbjct: 207 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD 266
Query: 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332
LYETL ITQ+VIF+NTRRKVDWLT++M +RD TVSA HGDMDQ RD+IMREFRSGSSRV
Sbjct: 267 LYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392
LITTDLLARGIDVQQVSLVINYDLPT ENY+HRIGR GRFGRKGVAINFVT +D R+L
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILR 386
Query: 393 DIQRFYNVVIEELPANVADLI 413
DI+ FYN +EE+P NVADLI
Sbjct: 387 DIETFYNTTVEEMPMNVADLI 407
|
|
| UNIPROTKB|E2R3J1 EIF4A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
Identities = 281/381 (73%), Positives = 326/381 (85%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
+++E+ D+FD M LKE+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTAT
Sbjct: 27 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT 86
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED-Q 152
F ILQQL+ E + QALVLAPTRELAQQI+KV+ ALGDYMG HAC+GGT+VR + Q
Sbjct: 87 FAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 146
Query: 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212
++ + H+VVGTPGRVFDML R+ L P +I+MFVLDEADEMLSRGFKDQIY+IFQ L
Sbjct: 147 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Query: 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272
IQV + SATMP + LE+T+KFM P+RILVK++ELTLEGIKQF++NV++EEWKLDTLCD
Sbjct: 207 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD 266
Query: 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332
LYETL ITQ+VIF+NTRRKVDWLT++M +RD TVSA HGDMDQ RD+IMREFRSGSSRV
Sbjct: 267 LYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392
LITTDLLARGIDVQQVSLVINYDLPT ENY+HRIGR GRFGRKGVAINFVT +D R+L
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILR 386
Query: 393 DIQRFYNVVIEELPANVADLI 413
DI+ FYN +EE+P NVADLI
Sbjct: 387 DIETFYNTTVEEMPMNVADLI 407
|
|
| UNIPROTKB|Q14240 EIF4A2 "Eukaryotic initiation factor 4A-II" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
Identities = 281/381 (73%), Positives = 326/381 (85%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
+++E+ D+FD M LKE+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTAT
Sbjct: 27 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT 86
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED-Q 152
F ILQQL+ E + QALVLAPTRELAQQI+KV+ ALGDYMG HAC+GGT+VR + Q
Sbjct: 87 FAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 146
Query: 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212
++ + H+VVGTPGRVFDML R+ L P +I+MFVLDEADEMLSRGFKDQIY+IFQ L
Sbjct: 147 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Query: 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272
IQV + SATMP + LE+T+KFM P+RILVK++ELTLEGIKQF++NV++EEWKLDTLCD
Sbjct: 207 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD 266
Query: 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332
LYETL ITQ+VIF+NTRRKVDWLT++M +RD TVSA HGDMDQ RD+IMREFRSGSSRV
Sbjct: 267 LYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392
LITTDLLARGIDVQQVSLVINYDLPT ENY+HRIGR GRFGRKGVAINFVT +D R+L
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILR 386
Query: 393 DIQRFYNVVIEELPANVADLI 413
DI+ FYN +EE+P NVADLI
Sbjct: 387 DIETFYNTTVEEMPMNVADLI 407
|
|
| UNIPROTKB|A6M930 EIF4A2 "Eukaryotic translation initiation factor 4A isoform 2" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
Identities = 281/381 (73%), Positives = 326/381 (85%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
+++E+ D+FD M LKE+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTAT
Sbjct: 27 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT 86
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED-Q 152
F ILQQL+ E + QALVLAPTRELAQQI+KV+ ALGDYMG HAC+GGT+VR + Q
Sbjct: 87 FAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 146
Query: 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212
++ + H+VVGTPGRVFDML R+ L P +I+MFVLDEADEMLSRGFKDQIY+IFQ L
Sbjct: 147 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Query: 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272
IQV + SATMP + LE+T+KFM P+RILVK++ELTLEGIKQF++NV++EEWKLDTLCD
Sbjct: 207 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD 266
Query: 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332
LYETL ITQ+VIF+NTRRKVDWLT++M +RD TVSA HGDMDQ RD+IMREFRSGSSRV
Sbjct: 267 LYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392
LITTDLLARGIDVQQVSLVINYDLPT ENY+HRIGR GRFGRKGVAINFVT +D R+L
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILR 386
Query: 393 DIQRFYNVVIEELPANVADLI 413
DI+ FYN +EE+P NVADLI
Sbjct: 387 DIETFYNTTVEEMPMNVADLI 407
|
|
| MGI|MGI:106906 Eif4a2 "eukaryotic translation initiation factor 4A2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
Identities = 281/381 (73%), Positives = 326/381 (85%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
+++E+ D+FD M LKE+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTAT
Sbjct: 27 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT 86
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED-Q 152
F ILQQL+ E + QALVLAPTRELAQQI+KV+ ALGDYMG HAC+GGT+VR + Q
Sbjct: 87 FAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 146
Query: 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212
++ + H+VVGTPGRVFDML R+ L P +I+MFVLDEADEMLSRGFKDQIY+IFQ L
Sbjct: 147 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Query: 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272
IQV + SATMP + LE+T+KFM P+RILVK++ELTLEGIKQF++NV++EEWKLDTLCD
Sbjct: 207 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD 266
Query: 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332
LYETL ITQ+VIF+NTRRKVDWLT++M +RD TVSA HGDMDQ RD+IMREFRSGSSRV
Sbjct: 267 LYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392
LITTDLLARGIDVQQVSLVINYDLPT ENY+HRIGR GRFGRKGVAINFVT +D R+L
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILR 386
Query: 393 DIQRFYNVVIEELPANVADLI 413
DI+ FYN +EE+P NVADLI
Sbjct: 387 DIETFYNTTVEEMPMNVADLI 407
|
|
| RGD|1309225 Eif4a2 "eukaryotic translation initiation factor 4A2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
Identities = 281/381 (73%), Positives = 326/381 (85%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
+++E+ D+FD M LKE+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTAT
Sbjct: 27 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT 86
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED-Q 152
F ILQQL+ E + QALVLAPTRELAQQI+KV+ ALGDYMG HAC+GGT+VR + Q
Sbjct: 87 FAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 146
Query: 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212
++ + H+VVGTPGRVFDML R+ L P +I+MFVLDEADEMLSRGFKDQIY+IFQ L
Sbjct: 147 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Query: 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272
IQV + SATMP + LE+T+KFM P+RILVK++ELTLEGIKQF++NV++EEWKLDTLCD
Sbjct: 207 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCD 266
Query: 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332
LYETL ITQ+VIF+NTRRKVDWLT++M +RD TVSA HGDMDQ RD+IMREFRSGSSRV
Sbjct: 267 LYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRV 326
Query: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392
LITTDLLARGIDVQQVSLVINYDLPT ENY+HRIGR GRFGRKGVAINFVT +D R+L
Sbjct: 327 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILR 386
Query: 393 DIQRFYNVVIEELPANVADLI 413
DI+ FYN +EE+P NVADLI
Sbjct: 387 DIETFYNTTVEEMPMNVADLI 407
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0UU86 | IF4A_PHANO | 3, ., 6, ., 4, ., 1, 3 | 0.7131 | 0.9200 | 0.9595 | N/A | no |
| Q40470 | IF4A7_TOBAC | 3, ., 6, ., 4, ., 1, 3 | 0.9007 | 1.0 | 1.0 | N/A | no |
| Q40471 | IF4A9_TOBAC | 3, ., 6, ., 4, ., 1, 3 | 0.9273 | 1.0 | 1.0 | N/A | no |
| A7EGL7 | IF4A_SCLS1 | 3, ., 6, ., 4, ., 1, 3 | 0.7061 | 0.9370 | 0.9723 | N/A | no |
| P10630 | IF4A2_MOUSE | 3, ., 6, ., 4, ., 1, 3 | 0.7401 | 0.9200 | 0.9336 | yes | no |
| P35683 | IF4A1_ORYSJ | 3, ., 6, ., 4, ., 1, 3 | 0.9082 | 1.0 | 0.9975 | yes | no |
| Q4R4Y9 | IF4A2_MACFA | 3, ., 6, ., 4, ., 1, 3 | 0.7375 | 0.9200 | 0.9313 | N/A | no |
| A1D7N3 | IF4A_NEOFI | 3, ., 6, ., 4, ., 1, 3 | 0.7157 | 0.9200 | 0.9547 | N/A | no |
| B5DG42 | IF4A3_SALSA | 3, ., 6, ., 4, ., 1, 3 | 0.6763 | 0.9128 | 0.9285 | N/A | no |
| Q41741 | IF4A_MAIZE | 3, ., 6, ., 4, ., 1, 3 | 0.8910 | 0.9927 | 1.0 | N/A | no |
| O42226 | I4A3B_XENLA | 3, ., 6, ., 4, ., 1, 3 | 0.6737 | 0.9128 | 0.9106 | N/A | no |
| A4QVP2 | IF4A_MAGO7 | 3, ., 6, ., 4, ., 1, 3 | 0.7184 | 0.9200 | 0.9595 | N/A | no |
| Q6Z2Z4 | IF4A3_ORYSJ | 3, ., 6, ., 4, ., 1, 3 | 0.8985 | 1.0 | 0.9975 | yes | no |
| Q4P331 | IF4A_USTMA | 3, ., 6, ., 4, ., 1, 3 | 0.6972 | 0.9491 | 0.9537 | N/A | no |
| Q3SZ54 | IF4A1_BOVIN | 3, ., 6, ., 4, ., 1, 3 | 0.7322 | 0.9200 | 0.9359 | no | no |
| P41382 | IF410_TOBAC | 3, ., 6, ., 4, ., 1, 3 | 0.9031 | 1.0 | 1.0 | N/A | no |
| Q7RV88 | IF4A_NEUCR | 3, ., 6, ., 4, ., 1, 3 | 0.7157 | 0.9200 | 0.9571 | N/A | no |
| P41381 | IF4A8_TOBAC | 3, ., 6, ., 4, ., 1, 3 | 0.9031 | 1.0 | 1.0 | N/A | no |
| P47943 | IF4A_SCHPO | 3, ., 6, ., 4, ., 1, 3 | 0.7157 | 0.9200 | 0.9693 | yes | no |
| Q2UPY3 | IF4A_ASPOR | 3, ., 6, ., 4, ., 1, 3 | 0.6868 | 0.9564 | 0.9382 | yes | no |
| Q5R4X1 | IF4A2_PONAB | 3, ., 6, ., 4, ., 1, 3 | 0.7401 | 0.9200 | 0.9336 | yes | no |
| Q14240 | IF4A2_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.7401 | 0.9200 | 0.9336 | yes | no |
| P41377 | IF4A2_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.8937 | 0.9951 | 0.9975 | yes | no |
| P41376 | IF4A1_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.8913 | 0.9951 | 0.9975 | yes | no |
| A5A6N4 | IF4A1_PANTR | 3, ., 6, ., 4, ., 1, 3 | 0.7296 | 0.9200 | 0.9359 | no | no |
| Q40467 | IF414_TOBAC | 3, ., 6, ., 4, ., 1, 3 | 0.9007 | 1.0 | 1.0 | N/A | no |
| Q40466 | IF413_TOBAC | 3, ., 6, ., 4, ., 1, 3 | 0.8985 | 0.8595 | 1.0 | N/A | no |
| Q40465 | IF411_TOBAC | 3, ., 6, ., 4, ., 1, 3 | 0.9031 | 1.0 | 1.0 | N/A | no |
| Q40468 | IF415_TOBAC | 3, ., 6, ., 4, ., 1, 3 | 0.9249 | 1.0 | 1.0 | N/A | no |
| Q02748 | IF4A_DROME | 3, ., 6, ., 4, ., 1, 3 | 0.7078 | 0.9200 | 0.9429 | yes | no |
| P41379 | IF4A2_NICPL | 3, ., 6, ., 4, ., 1, 3 | 0.9079 | 1.0 | 1.0 | N/A | no |
| Q5RKI1 | IF4A2_RAT | 3, ., 6, ., 4, ., 1, 3 | 0.7401 | 0.9200 | 0.9336 | yes | no |
| Q9CAI7 | IF4A3_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.8599 | 1.0 | 0.9975 | no | no |
| Q5R5F5 | IF4A1_PONAB | 3, ., 6, ., 4, ., 1, 3 | 0.7270 | 0.9200 | 0.9359 | yes | no |
| Q1DQ20 | IF4A_COCIM | 3, ., 6, ., 4, ., 1, 3 | 0.7052 | 0.9200 | 0.9547 | N/A | no |
| Q4R8K5 | IF4A1_MACFA | 3, ., 6, ., 4, ., 1, 3 | 0.7296 | 0.9200 | 0.9359 | N/A | no |
| Q2HFP1 | IF4A_CHAGB | 3, ., 6, ., 4, ., 1, 3 | 0.7105 | 0.9200 | 0.9571 | N/A | no |
| P41378 | IF4A_WHEAT | 3, ., 6, ., 4, ., 1, 3 | 0.8985 | 1.0 | 0.9975 | N/A | no |
| A2QEN5 | IF4A_ASPNC | 3, ., 6, ., 4, ., 1, 3 | 0.6950 | 0.9346 | 0.9698 | yes | no |
| P27639 | IF4A_CAEEL | 3, ., 6, ., 4, ., 1, 3 | 0.6842 | 0.9200 | 0.9452 | yes | no |
| A1CJT5 | IF4A_ASPCL | 3, ., 6, ., 4, ., 1, 3 | 0.7105 | 0.9200 | 0.9547 | N/A | no |
| Q3SZ65 | IF4A2_BOVIN | 3, ., 6, ., 4, ., 1, 3 | 0.7401 | 0.9200 | 0.9336 | yes | no |
| Q5B948 | IF4A_EMENI | 3, ., 6, ., 4, ., 1, 3 | 0.7 | 0.9200 | 0.9547 | yes | no |
| P29562 | IF4A1_RABIT | 3, ., 6, ., 4, ., 1, 3 | 0.7322 | 0.9200 | 0.9547 | no | no |
| Q8JFP1 | IF4A2_CHICK | 3, ., 6, ., 4, ., 1, 3 | 0.7375 | 0.9200 | 0.9336 | yes | no |
| A6RJ45 | IF4A_BOTFB | 3, ., 6, ., 4, ., 1, 3 | 0.7087 | 0.9370 | 0.9723 | N/A | no |
| P60842 | IF4A1_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.7322 | 0.9200 | 0.9359 | no | no |
| P60843 | IF4A1_MOUSE | 3, ., 6, ., 4, ., 1, 3 | 0.7322 | 0.9200 | 0.9359 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.993 |
| 3rd Layer | 3.6.4 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 413 | |||
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 0.0 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-139 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-104 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 2e-98 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-78 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 4e-77 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 7e-75 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 2e-65 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 3e-63 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 6e-60 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 2e-57 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 2e-55 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 8e-55 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-51 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 1e-41 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-40 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 4e-27 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 3e-26 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-18 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 6e-16 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 5e-15 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 2e-10 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 2e-08 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 2e-08 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 4e-08 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 6e-08 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 1e-07 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 9e-06 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 9e-06 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 3e-05 | |
| PLN03137 | 1195 | PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 | 1e-04 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 2e-04 | |
| TIGR03817 | 742 | TIGR03817, DECH_helic, helicase/secretion neighbor | 0.001 | |
| TIGR00631 | 655 | TIGR00631, uvrb, excinuclease ABC, B subunit | 0.002 | |
| COG1200 | 677 | COG1200, RecG, RecG-like helicase [DNA replication | 0.004 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 624 bits (1611), Expect = 0.0
Identities = 270/380 (71%), Positives = 314/380 (82%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
+YDE+ DSFD++ L E+LLRGIY+YGFEKPSAIQQRGI P G D I QAQSGTGKTAT
Sbjct: 22 NYDEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTAT 81
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR 153
F LQ +DY+ CQAL+LAPTRELAQQI+KV+ ALGDY+ V+ HACVGGT VR+D
Sbjct: 82 FVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDIN 141
Query: 154 ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213
L AGVH+VVGTPGRV+DM+ ++ LR D +++F+LDEADEMLSRGFK QIYD+F+ LP
Sbjct: 142 KLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPD 201
Query: 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273
+QV +FSATMP E LE+T KFM P RILVK+DELTLEGI+QF+V V+KEEWK DTLCDL
Sbjct: 202 VQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDL 261
Query: 274 YETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL 333
YETL ITQ++I+ NTRRKVD+LT +M RD TVS HGDMDQ RD+IMREFRSGS+RVL
Sbjct: 262 YETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 321
Query: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLAD 393
ITTDLLARGIDVQQVSLVINYDLP PENY+HRIGRSGRFGRKGVAINFVT DD L +
Sbjct: 322 ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKE 381
Query: 394 IQRFYNVVIEELPANVADLI 413
I+R YN IEE+P VAD +
Sbjct: 382 IERHYNTQIEEMPMEVADYL 401
|
Length = 401 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 407 bits (1047), Expect = e-139
Identities = 162/371 (43%), Positives = 228/371 (61%), Gaps = 6/371 (1%)
Query: 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 99
F S+GL LL+ + GFE+P+ IQ I G DV+ QAQ+GTGKTA F +L
Sbjct: 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLL 88
Query: 100 QQLDYESLQC--QALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILS 156
Q++ + AL+LAPTRELA QI + +R LG + G++V GG S+R+ L
Sbjct: 89 QKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK 148
Query: 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQV 216
GV +VV TPGR+ D+++R L + VLDEAD ML GF D I I + LP Q
Sbjct: 149 RGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQT 208
Query: 217 GVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFHVNVDKEEWKLDTLCDLY 274
+FSATMP + E+ R+++N PV I V ++L TL+ IKQF++ V+ EE KL+ L L
Sbjct: 209 LLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268
Query: 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLI 334
+ + ++FV T+R V+ L + +R R V+A HGD+ Q RD + +F+ G RVL+
Sbjct: 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328
Query: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDDRMLAD 393
TD+ ARG+D+ VS VINYDLP PE+Y+HRIGR+GR GRKGVAI+FVT ++ + L
Sbjct: 329 ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKR 388
Query: 394 IQRFYNVVIEE 404
I++ +
Sbjct: 389 IEKRLERKLPS 399
|
Length = 513 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = e-104
Identities = 106/203 (52%), Positives = 132/203 (65%), Gaps = 2/203 (0%)
Query: 42 FDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101
F+ +GL LLRGIYA GFEKP+ IQ R I P G DVI QAQ+G+GKTA F IL++
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEK 60
Query: 102 LDYESLQ--CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159
LD + QAL+LAPTRELA QI +V R LG + +KV GGTS+ + R L G
Sbjct: 61 LDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGP 120
Query: 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219
H+VV TPGR+ D+L R L ++ VLDEAD ML GF+DQI +I + LP Q +F
Sbjct: 121 HIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLF 180
Query: 220 SATMPPEALEITRKFMNKPVRIL 242
SATMP E ++ RKF+ PVRIL
Sbjct: 181 SATMPKEVRDLARKFLRNPVRIL 203
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 300 bits (772), Expect = 2e-98
Identities = 135/372 (36%), Positives = 208/372 (55%), Gaps = 9/372 (2%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
+F ++ L LL + G+ + + IQ + + G DVI QA++G+GKTA F G+LQ
Sbjct: 5 AFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQ 64
Query: 101 QLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGV 159
+LD + + QALVL PTRELA Q+ K +R L ++ +KV GG + L G
Sbjct: 65 KLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGA 124
Query: 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219
H++VGTPGR+ D LR+ +L D + VLDEAD ML GF+D I I + P + Q +F
Sbjct: 125 HIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLF 184
Query: 220 SATMPPEALEITRKFMNKPVRILV--KRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277
SAT P I+++F PV + V D I+Q V +E +L L L
Sbjct: 185 SATYPEGIAAISQRFQRDPVEVKVESTHDLPA---IEQRFYEVSPDE-RLPALQRLLLHH 240
Query: 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD 337
V+F NT+++ + D + ++ + A HGD++Q RD ++ F + S VL+ TD
Sbjct: 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD 300
Query: 338 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRF 397
+ ARG+D++ + VINY+L PE ++HRIGR+GR G KG+A++ V ++ + I+ +
Sbjct: 301 VAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDY 360
Query: 398 YN--VVIEELPA 407
+ E LP+
Sbjct: 361 LGRKLNWEPLPS 372
|
Length = 460 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 1e-78
Identities = 146/378 (38%), Positives = 207/378 (54%), Gaps = 2/378 (0%)
Query: 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCS 96
E +F +GLK +L + G+EKPS IQ I G DV+ AQ+G+GKTA F
Sbjct: 3 EFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL 62
Query: 97 GILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRIL 155
+L LD E Q LVLAPTRELA Q+ + M +M GV V A GG R L
Sbjct: 63 PLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
Query: 156 SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215
G +VVGTPGR+ D L+R +L + VLDEADEML GF + + I +P Q
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182
Query: 216 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE 275
+FSATMP ITR+FM +P + ++ T I Q + V K + L E
Sbjct: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLE 241
Query: 276 TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLIT 335
++IFV T+ + + + + +A +GDM+Q R+ + + G +LI
Sbjct: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301
Query: 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQ 395
TD+ ARG+DV+++SLV+NYD+P E+Y+HRIGR+GR GR G A+ FV + R+L +I+
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361
Query: 396 RFYNVVIEELPANVADLI 413
R + I E+ A+L+
Sbjct: 362 RTMKLTIPEVELPNAELL 379
|
Length = 629 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 4e-77
Identities = 130/374 (34%), Positives = 192/374 (51%), Gaps = 10/374 (2%)
Query: 42 FDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101
F + L E+LL + G+ +P+AIQ I P G DV+ A +GTGKTA F LQ
Sbjct: 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQH 62
Query: 102 L-DY---ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157
L D+ +S + L+L PTRELA Q+ R L + + + GG + + S
Sbjct: 63 LLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE 122
Query: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217
+VV TPGR+ ++ ++ + +LDEAD ML GF I I + Q
Sbjct: 123 NQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTL 182
Query: 218 VFSATMPPEALE-ITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276
+FSAT+ +A++ + +N PV + + + I Q++ D E K LC L +
Sbjct: 183 LFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQ 242
Query: 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT 336
+T+S++FV TR +V L +R G+M Q R+ ++ G VL+ T
Sbjct: 243 PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT 302
Query: 337 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQR 396
D+ ARGID+ VS VIN+D+P + YLHRIGR+GR GRKG AI+ V D +L I+R
Sbjct: 303 DVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362
Query: 397 FYNV-----VIEEL 405
+ VI+EL
Sbjct: 363 YIEEPLKARVIDEL 376
|
Length = 434 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 7e-75
Identities = 130/362 (35%), Positives = 202/362 (55%), Gaps = 7/362 (1%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
SFDS+GL ++LR + G+ +P+ IQQ+ I +G D++ AQ+GTGKTA F +LQ
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 101 QLDYESLQCQ------ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154
L + AL+L PTRELA QI + +R Y+ ++ GG S+
Sbjct: 62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121
Query: 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214
L GV V+V TPGR+ D+ + +++ D + + VLDEAD ML GF I + LP K
Sbjct: 122 LRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKR 181
Query: 215 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY 274
Q +FSAT + + K ++ P+ I V R E + Q VDK+ K + L +
Sbjct: 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR-KRELLSQMI 240
Query: 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLI 334
Q ++F T+ + L +Q+ +A HG+ Q +R + +F+SG RVL+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
Query: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394
TD+ ARG+D++++ V+NY+LP PE+Y+HRIGR+GR G A++ V D+ ++L DI
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
Query: 395 QR 396
++
Sbjct: 361 EK 362
|
Length = 456 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-65
Identities = 123/377 (32%), Positives = 190/377 (50%), Gaps = 11/377 (2%)
Query: 29 QDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGT 88
+DF V E F L L+ I+ GF + IQ + + G D I +AQ+GT
Sbjct: 76 EDFVVEPQEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGT 135
Query: 89 GKTATFCSGILQQLDYESLQCQ-------ALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141
GKTA F I+ QL + AL++APTREL QI K AL Y G+ V
Sbjct: 136 GKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMT 195
Query: 142 CVGGTSVREDQRILSAG-VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200
VGG + + L A ++V TPGR+ D +R + D + + VLDEAD ML GF
Sbjct: 196 FVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFI 255
Query: 201 DQIYDIFQHLP--GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHV 258
Q+ I + P + Q +FSAT + + + +++ P + ++ + + + ++Q HV
Sbjct: 256 PQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQ-HV 314
Query: 259 NVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSR 318
K L +L + ++F N + +V + +++ + GD+ Q+ R
Sbjct: 315 YAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKR 374
Query: 319 DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV 378
+ FR G RVL+ TD+ RGI + +S VIN+ LP P++Y+HRIGR+GR G GV
Sbjct: 375 IKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV 434
Query: 379 AINFVTRDDDRMLADIQ 395
+I+F DD L +I+
Sbjct: 435 SISFAGEDDAFQLPEIE 451
|
Length = 475 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 3e-63
Identities = 126/368 (34%), Positives = 187/368 (50%), Gaps = 16/368 (4%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
SF+ + +L+ + GF +P+ IQ +G G D+I A++G+GKT F +L
Sbjct: 131 SFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAF---LLP 187
Query: 101 QLDYESLQCQ--------ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ 152
+ + + Q LVLAPTRELA+QI + G ++ GG R
Sbjct: 188 AIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI 247
Query: 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212
L GV +++ PGR+ D L + VLDEAD ML GF+ QI I +
Sbjct: 248 YALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 307
Query: 213 KIQVGVFSATMPPEALEITRKFM-NKPVRILVKRDELTL-EGIKQFHVNVDKEEWKLDTL 270
Q ++SAT P E + R +PV + V +LT IKQ V V +E K L
Sbjct: 308 DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQ-EVFVVEEHEKRGKL 366
Query: 271 CDLYETLAITQS--VIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG 328
L + + +IFV T++ D+LT ++R HGD Q R ++ EF++G
Sbjct: 367 KMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG 426
Query: 329 SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388
S ++I TD+ +RG+DV+ V VIN+D P Q E+Y+HRIGR+GR G KG + F+T D
Sbjct: 427 KSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486
Query: 389 RMLADIQR 396
R+ D+ +
Sbjct: 487 RLARDLVK 494
|
Length = 545 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 6e-60
Identities = 120/367 (32%), Positives = 188/367 (51%), Gaps = 18/367 (4%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF------ 94
SF S GL LL + G+E P+ IQ + I G ++ A +G+GKTA+F
Sbjct: 122 SFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIIS 181
Query: 95 -CSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR 153
C I E A+VL PTREL Q+E + LG + K VGG ++ +
Sbjct: 182 RCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY 241
Query: 154 ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213
+ GV ++VGTPGR+ D+L + + D + + VLDE D ML RGF+DQ+ IFQ L +
Sbjct: 242 RIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-Q 300
Query: 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273
QV +FSAT+ PE + + I + + +KQ + V+ ++ K L
Sbjct: 301 PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQ----KL 356
Query: 274 YETLAITQ-----SVIFVNTRRKVDWLTDQMRSRDHTVSAT-HGDMDQNSRDIIMREFRS 327
++ L Q +V+FV++R D L + + + + HG+ R +M+ F
Sbjct: 357 FDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV 416
Query: 328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387
G V++ T +L RG+D+ +V VI +D+P + Y+H+IGR+ R G KG AI FV +D
Sbjct: 417 GEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEED 476
Query: 388 DRMLADI 394
+ ++
Sbjct: 477 RNLFPEL 483
|
Length = 518 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 2e-57
Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 34/362 (9%)
Query: 42 FDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101
F L ++ + GF + IQ + G DV QAQ+GTGKT F +
Sbjct: 10 FSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHY 69
Query: 102 L-------DYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154
L D + Q +AL++APTRELA QI L G+K+ GG + ++
Sbjct: 70 LLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 129
Query: 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214
L +GV +++GT GR+ D ++ + I++ VLDEAD M GF I +F+ +P
Sbjct: 130 LESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN 189
Query: 215 Q--VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ--FH-VNVDK------- 262
Q +FSAT+ E+ + MN P + V+ ++ T IK+ F+ N +K
Sbjct: 190 QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL 249
Query: 263 --EEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDI 320
EEW +++IF NT+ + + + + + H V GD+ Q R
Sbjct: 250 IEEEWP-------------DRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296
Query: 321 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI 380
I+ EF G +L+ TD+ ARG+ + V+ V NYDLP E+Y+HRIGR+GR G G +I
Sbjct: 297 ILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 356
Query: 381 NF 382
+
Sbjct: 357 SL 358
|
Length = 423 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (488), Expect = 2e-55
Identities = 123/369 (33%), Positives = 192/369 (52%), Gaps = 15/369 (4%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
+F S L LL G+ + GF + + IQ + G DV QAQ+GTGKT F ++
Sbjct: 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMN 69
Query: 101 QL-------DYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR 153
+L D + +AL+LAPTRELA QI K G +G++ GG + +
Sbjct: 70 RLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRE 129
Query: 154 ILSAGVHVVVGTPGRVFDMLRRQ---SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL 210
+L GV V++ TPGR+ D +++ SL I VLDEAD M GF I + + +
Sbjct: 130 LLQQGVDVIIATPGRLIDYVKQHKVVSLHACEI--CVLDEADRMFDLGFIKDIRFLLRRM 187
Query: 211 P--GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLD 268
P G Q +FSAT+ LE+ + MN+P +++V+ + +T ++Q + +E K
Sbjct: 188 PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQ-RIYFPADEEKQT 246
Query: 269 TLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG 328
L L ++++FVNT+ V+ + + + V GD+ Q R+ ++ F+ G
Sbjct: 247 LLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306
Query: 329 SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388
+L+ TD+ ARG+ + V V NYDLP E+Y+HRIGR+ R G +G AI+F
Sbjct: 307 QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYA 366
Query: 389 RMLADIQRF 397
L DI+ +
Sbjct: 367 MSLPDIEAY 375
|
Length = 572 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 8e-55
Identities = 70/169 (41%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123
+ IQ + I G DV+ QA +G+GKT F ILQ L + QALVLAPTRELA+Q
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQALLPKKGGPQALVLAPTRELAEQ 60
Query: 124 IEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG-VHVVVGTPGRVFDMLRRQSLRP-D 181
I + ++ L +G++V GGTS++E R L G ++VGTPGR+ D+LRR L+
Sbjct: 61 IYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGKLKLLK 120
Query: 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEI 230
+++ VLDEA +L GF D + +I LP Q+ + SAT+P ++
Sbjct: 121 NLKLLVLDEAHRLLDMGFGDDLEEILSRLPPDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 3e-51
Identities = 77/204 (37%), Positives = 107/204 (52%), Gaps = 5/204 (2%)
Query: 55 IYAYGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALV 113
I +GFE Q+ I GL DVI A +G+GKT L+ L + LV
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEAL-KRGKGGRVLV 59
Query: 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV-HVVVGTPGRVFDM 172
L PTRELA+Q + ++ LG +G+KV GG S RE R L +G ++V TPGR+ D+
Sbjct: 60 LVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDL 119
Query: 173 LRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITR 232
L L + + +LDEA +L GF DQ+ + + LP +Q+ + SAT P E +
Sbjct: 120 LENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLE 179
Query: 233 KFMNKPVRILVKRDELTLEGIKQF 256
F+N PV I V LE I+QF
Sbjct: 180 LFLNDPVFIDVGF--TPLEPIEQF 201
|
Length = 201 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-41
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 4/132 (3%)
Query: 253 IKQFHVNVDKEEWKLDTLCDLYETLAIT--QSVIFVNTRRKVDWLTDQMRSRDHTVSATH 310
IKQ+ + V+ + KL+ L +L + + +IF +++ +D L + +R V+A H
Sbjct: 2 IKQYVLPVE--DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALH 59
Query: 311 GDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
GD Q R+ ++++FR G VL+ TD++ARGID+ VS+VINYDLP P +YL RIGR+
Sbjct: 60 GDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119
Query: 371 GRFGRKGVAINF 382
GR G+KG AI
Sbjct: 120 GRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-40
Identities = 59/145 (40%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Query: 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138
DV+ A +G+GKT IL+ LD Q LVLAPTRELA Q+ + ++ L G+K
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELLDSLK-GGQVLVLAPTRELANQVAERLKELFGE-GIK 59
Query: 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198
V +GGTS+++ +++LS +VVGTPGR+ D L R L + + +LDEA +L++G
Sbjct: 60 VGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG 119
Query: 199 FKDQIYDIFQHLPGKIQVGVFSATM 223
F I LP QV + SAT
Sbjct: 120 FGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-27
Identities = 37/78 (47%), Positives = 52/78 (66%)
Query: 297 DQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356
+R V+ HG + Q R+ I+ +FR+G S+VL+ TD+ RGID+ V+LVINYDL
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDL 60
Query: 357 PTQPENYLHRIGRSGRFG 374
P P +Y+ RIGR+GR G
Sbjct: 61 PWNPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-26
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 293 DWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352
+ L + ++ V+ HG + Q R+ I+ +F +G +VL+ TD+ RG+D+ V LVI
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 353 NYDLPTQPENYLHRIGRSGRFG 374
YDLP P +Y+ RIGR+GR G
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-18
Identities = 88/372 (23%), Positives = 148/372 (39%), Gaps = 32/372 (8%)
Query: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-----DYESLQCQALVL 114
F + Q+ I G +V+ A +G+GKT ++ +L AL +
Sbjct: 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYI 79
Query: 115 APTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLR 174
+P + L I + + +G++V G T E Q++L H+++ TP + +L
Sbjct: 80 SPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLN 139
Query: 175 RQSLRPDY--IRMFVLDEADEMLS--RGFKDQI---YDIFQHLPGKIQ-VGVFSATMPPE 226
R +R ++DE + RG Q+ + + L G Q +G+ SAT+ P
Sbjct: 140 SPKFRELLRDVRYVIVDEIHALAESKRG--VQLALSLERLRELAGDFQRIGL-SATVGP- 195
Query: 227 ALEITRKFM---NKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA--ITQ 281
E KF+ P I+ LE IK D + + LYE +A + +
Sbjct: 196 -PEEVAKFLVGFGDPCEIVDVSAAKKLE-IKVISPVEDLI-YDEELWAALYERIAELVKK 252
Query: 282 SV---IFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD 337
IF NTR + L +++ + HG + + R + + G + ++ T
Sbjct: 253 HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATS 312
Query: 338 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG-RFGRKGVAINFVTRDDDRM--LADI 394
L GID+ + LVI P +L RIGR+G R G I DD + L
Sbjct: 313 SLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLA 372
Query: 395 QRFYNVVIEELP 406
+E +
Sbjct: 373 DLALEGKLERIK 384
|
Length = 814 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 6e-16
Identities = 80/375 (21%), Positives = 135/375 (36%), Gaps = 66/375 (17%)
Query: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135
+G +V+ +G+GKT +F IL L +AL+L PT LA + +R L +
Sbjct: 84 EGRNVVVTTGTGSGKTESFLLPILDHL-LRDPSARALLLYPTNALANDQAERLRELISDL 142
Query: 136 GVKVHACV--GGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP--------DYIRM 185
KV G T E + I+ +++ P DML LR ++
Sbjct: 143 PGKVTFGRYTGDTPPEERRAIIRNPPDILLTNP----DMLHYLLLRNHDAWLWLLRNLKY 198
Query: 186 FVLDEAD----------EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFM 235
V+DE +L R + +Q+ SAT+ E +
Sbjct: 199 LVVDELHTYRGVQGSEVALLLRRLLR----RLRRYGSPLQIICTSATLA-NPGEFAEELF 253
Query: 236 NKPVRILVKRD---------ELTLEGIKQFHVNVDKEEWKLDT------LCDLYETLAIT 280
+ + V D I++ ++ + + + +TL
Sbjct: 254 GRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLV-- 311
Query: 281 QSVIFVNTRRKV--DWLTDQMRSRD------HTVSATHGDMDQNSRDIIMREFRSGSSRV 332
F +R++V +L+ + R VS + + R I EF+ G
Sbjct: 312 ----FFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367
Query: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG-VAINFVTRDDDRML 391
+I T+ L GID+ + VI Y P + R+GR GR+G ++ V D
Sbjct: 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQ--RAGRAGRRGQESLVLVVLRSD--- 422
Query: 392 ADIQRFYNVVIEELP 406
+ +Y EEL
Sbjct: 423 -PLDSYYLRHPEELL 436
|
Length = 851 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 5e-15
Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 23/235 (9%)
Query: 167 GRVFDMLRRQSLRPDYIRMFVLDEADEMLSR---GFK---DQIYDIFQHLPGKIQVGVFS 220
R ++L+R I + +DEA +S+ F+ ++ + LP V +
Sbjct: 121 PRFLELLKRLP-----ISLVAIDEA-HCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALT 173
Query: 221 ATMPPEALE--ITRKFMNKPVRIL--VKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276
AT P + + + R L L+ + + D+ + L L ++
Sbjct: 174 ATATPRVRDDIREQLGLQDANIFRGSFDRPNLALK-VVEKGEPSDQLAFLATVLPQLSKS 232
Query: 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT 336
+I+ TR+KV+ L + +R + A H + R+ + + F + +V++ T
Sbjct: 233 -----GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT 287
Query: 337 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRML 391
+ GID V VI+YDLP E+Y GR+GR G AI + +D R
Sbjct: 288 NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQ 342
|
Length = 590 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 283 VIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342
+I+ +R+K + +T +++ A H ++ ++RD + +F+ +V++ T G
Sbjct: 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMG 289
Query: 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVI 402
I+ V VI+Y LP E+Y GR+GR G F ADI R +++
Sbjct: 290 INKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAP------ADINRLRRLLM 343
Query: 403 EE 404
EE
Sbjct: 344 EE 345
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 30/98 (30%), Positives = 51/98 (52%)
Query: 283 VIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342
+I+ ++R+KV+ L +++ S+ + A H + R +F +V++ T+ G
Sbjct: 228 IIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMG 287
Query: 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI 380
ID V VI+YD+P E+Y GR+GR G AI
Sbjct: 288 IDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 71/281 (25%), Positives = 116/281 (41%), Gaps = 28/281 (9%)
Query: 112 LVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGT-P 166
L L P LA Q + + +G+KV VG + ++ + + S ++VGT
Sbjct: 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYE 324
Query: 167 GRVFDMLRRQSLRPDYIRMFVLDEAD--EMLSRGFK-DQIYDIFQHLPGKIQVGVFSATM 223
G D L R I V+DE E RG + D + ++L Q SAT+
Sbjct: 325 G--IDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV 382
Query: 224 P-PEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL-DTLCDL-YETLAIT 280
PE E+ +K K V L + LE F N + E+W + L + T +
Sbjct: 383 GNPE--ELAKKLGAKLV--LYDERPVPLERHLVFARN-ESEKWDIIARLVKREFSTESSK 437
Query: 281 ----QSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT 336
Q+++F +RR+ L D + + + H + R + R F + ++TT
Sbjct: 438 GYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497
Query: 337 DLLARGID--VQQV---SLVINYDLPTQPENYLHRIGRSGR 372
LA G+D QV SL + + + + +GR+GR
Sbjct: 498 AALAAGVDFPASQVIFESLAMGIEWLS-VREFQQMLGRAGR 537
|
Length = 830 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 70/365 (19%), Positives = 123/365 (33%), Gaps = 82/365 (22%)
Query: 87 GTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ-IEKVMRALGDYMGVKVHACVGG 145
G GKT L+ LVL PT+EL Q E + + L + + GG
Sbjct: 65 GAGKTVVAA------EAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGI---YGG 115
Query: 146 TSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL------RPDYIRMFVLDEADEMLSRGF 199
+ V V T V + RRQ L I + DE + + +
Sbjct: 116 GEKELE------PAKVTVAT---VQTLARRQLLDEFLGNEFGLI---IFDEVHHLPAPSY 163
Query: 200 KDQIYDIFQHLPGKIQVGVFSATMP---------------PEALEITRKFMNK-----PV 239
+ +I ++ ++ G +AT P E++ K + P
Sbjct: 164 R-RILELLSAAYPRL--G-LTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPY 219
Query: 240 RILVKRDELTLEGIKQ---FHVNVDKEEWKLDTLCDLYETLAIT---------------- 280
+ + + LT + ++ + TL E I
Sbjct: 220 KYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLK 279
Query: 281 -----QSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLIT 335
+++IF + + V A G+ + R+ I+ FR+G +VL+T
Sbjct: 280 HARGDKTLIFASDVEHAYEIAKLFL-APGIVEAITGETPKEEREAILERFRTGGIKVLVT 338
Query: 336 TDLLARGIDVQQVSLVINYDLPTQ-PENYLHRIG---RSGRFGRKGVAINFVTRDDDRML 391
+L G+D+ ++I PT ++ R+G R +A+++ DD
Sbjct: 339 VKVLDEGVDIPDADVLI-ILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGE 397
Query: 392 ADIQR 396
DI R
Sbjct: 398 EDIAR 402
|
Length = 442 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 283 VIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342
+I+ N+R KV+ +++SR + +A H +D + R + F+ ++++ T G
Sbjct: 240 IIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMG 299
Query: 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 382
I+ V V+++D+P E+Y GR+GR G A+ F
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339
|
Length = 607 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 67/318 (21%), Positives = 124/318 (38%), Gaps = 59/318 (18%)
Query: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135
+V+ A +G+GKT IL L + + + P + LA++ + L +
Sbjct: 46 SDENVLISAPTGSGKTLIALLAILSTL--LEGGGKVVYIVPLKALAEEKYEEFSRLEEL- 102
Query: 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195
G++V G +D+R+ A V+V TP ++ + R++ + + + V+DE +L
Sbjct: 103 GIRV-GISTGDYDLDDERL--ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEI-HLL 158
Query: 196 S---RG-FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMN-KPVRILVKRDEL-- 248
RG + I + L I++ SAT+ P A E+ ++N K V + L
Sbjct: 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL-PNAEEVA-DWLNAKLVESDWRPVPLRR 216
Query: 249 -TLEGIKQFHVNVDKEEWKLD----TLCDLYETLA-ITQSVIFVNTRR------------ 290
+ K+ W L L + E+LA Q ++FV++R+
Sbjct: 217 GVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIK 276
Query: 291 -----------KVDWLTDQMRSRDHTVSAT--------------HGDMDQNSRDIIMREF 325
+D + + S H + + R ++ F
Sbjct: 277 MSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAF 336
Query: 326 RSGSSRVLITTDLLARGI 343
R G +VL++T LA G+
Sbjct: 337 RKGKIKVLVSTPTLAAGV 354
|
Length = 766 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 313 MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 372
M Q + I+ +FR G VL+ T + G+D+ +V LVI Y+ + R GR+GR
Sbjct: 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR 468
Query: 373 FGRKGVAINFVTRDDDRMLADIQRFY 398
RKG + VT D +Y
Sbjct: 469 -KRKGRVVVLVTEGT----RDEAYYY 489
|
Length = 542 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 77/338 (22%), Positives = 127/338 (37%), Gaps = 79/338 (23%)
Query: 83 QAQSGTGKTATFCSGILQQLD--YESLQCQALVLAPTRELAQQ-IEKVMRALGDYMGVKV 139
Q G+GKT +L ++ Y Q ++APT LA+Q + L G++V
Sbjct: 262 QGDVGSGKTLVAALAMLAAIEAGY-----QVALMAPTEILAEQHYNSLRNLLAPL-GIEV 315
Query: 140 HACVGGT------SVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193
G + E I S +H+VVGT + + + + L + ++DE
Sbjct: 316 ALLTGSLKGKRRKELLET--IASGQIHLVVGTHALIQEKVEFKRLA-----LVIIDE--- 365
Query: 194 MLSRGFKDQIYDIFQHLPGKIQ---------------VGVFSATMPPEALEITRKFMNKP 238
QH G Q V V SAT P L +T + +
Sbjct: 366 --------------QHRFGVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALT-VYGDLD 410
Query: 239 VRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTR----RKVDW 294
I+ DEL G K + K + K + E +A + V K+D
Sbjct: 411 TSII---DELPP-GRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDL 466
Query: 295 LTDQ---MRSRDH----TVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347
+ R + V HG M + ++ +M EFR G +L+ T ++ G+DV
Sbjct: 467 KAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526
Query: 348 VSLVINYDLPTQPENY----LHRI-GRSGRFGRKGVAI 380
++++ D E + LH++ GR GR + +
Sbjct: 527 ATVMVIED----AERFGLSQLHQLRGRVGRGDHQSYCL 560
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 81/337 (24%), Positives = 130/337 (38%), Gaps = 56/337 (16%)
Query: 83 QAQSGTGKT-ATFCSGILQQLDYESLQ--CQALVLAPTRELAQQIEKVMRALGDYMGVKV 139
A +G+GKT A F ++ E + L + P R LA I + ++A + +G+ +
Sbjct: 34 IAPTGSGKTLAGFLPSLIDLAGPEKPKKGLHTLYITPLRALAVDIARNLQAPIEELGLPI 93
Query: 140 HACV--GGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-----RPDYIRMF------ 186
G TS E R +++ TP +SL PD R+F
Sbjct: 94 RVETRTGDTSSSERARQRKKPPDILLTTP---------ESLALLLSYPDAARLFKDLRCV 144
Query: 187 VLDEADEMLS--RGFKDQIYDIFQHL----PGKIQVGVFSATM--PPEALEITRKFMNKP 238
V+DE E+ RG DQ+ L PG + G+ SAT+ EA + P
Sbjct: 145 VVDEWHELAGSKRG--DQLELALARLRRLAPGLRRWGL-SATIGNLEEARRVLLGVGGAP 201
Query: 239 VRILVKRDELTLEGIKQFHVNVDKEEWK----LDTLCDLYETLAITQSV-IFVNTRRKVD 293
++ + + I + ++ W L L ++Y + ++ +F NTR + +
Sbjct: 202 AVLVRGKLPKAIPVISLLPESEERFPWAGHLGLRALPEVYAEIDQARTTLVFTNTRSQAE 261
Query: 294 -WLTDQMRSRD--------HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344
W + H HG +D+ R + +G R ++ T L G+D
Sbjct: 262 LWFQALWEANPEFALPIALH-----HGSLDREQRRWVEAAMAAGRLRAVVCTSSLDLGVD 316
Query: 345 VQQVSLVINYDLPTQPENYLHRIGRSG-RFGRKGVAI 380
V LVI P L R GRS R G A+
Sbjct: 317 FGPVDLVIQIGSPKGVARLLQRAGRSNHRPGEPSRAL 353
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 283 VIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342
+I+ +R + + ++++ H + HG MD R + +++ ++ T G
Sbjct: 684 IIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743
Query: 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK 376
I+ V VI++ LP E Y GR+GR G++
Sbjct: 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQR 777
|
Length = 1195 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 310 HGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 369
HG + + R I + +SG R ++ T L GID+ V LVI P + L RIGR
Sbjct: 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGR 367
Query: 370 SG 371
+G
Sbjct: 368 AG 369
|
Length = 1490 |
| >gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 84/378 (22%), Positives = 139/378 (36%), Gaps = 53/378 (14%)
Query: 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQ 108
+++ + A G +P Q R G V+ + +GK+ + +L L + +
Sbjct: 23 PDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSAL-ADDPR 81
Query: 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGR 168
AL LAPT+ LA + +R L GV+ A G + E++R V+ P
Sbjct: 82 ATALYLAPTKALAADQLRAVRELT-LRGVRP-ATYDGDTPTEERRWAREHARYVLTNP-- 137
Query: 169 VFDMLRRQSLRPDY---------IRMFVLDEADEMLSRG-FKDQIYDIFQHLP------G 212
DML R + P + +R V+DE RG F + + + L G
Sbjct: 138 --DMLHR-GILPSHARWARFLRRLRYVVIDECHSY--RGVFGSHVALVLRRLRRLCARYG 192
Query: 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVK----RDELT----------LEGIKQFHV 258
V V ++ + + + PV + + R T L G V
Sbjct: 193 ASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPV 252
Query: 259 NVDKEEWKLDTLCDLY----ETLAITQS-----VIFVNTRRKVDWLTDQMRSRDHTVSAT 309
D L DL TL +S ++ RR + + + R V+A
Sbjct: 253 RRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAER---VAAY 309
Query: 310 HGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 369
R + R R G + TT+ L G+D+ + V+ P + + GR
Sbjct: 310 RAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGR 369
Query: 370 SGRFGRKGVAINFVTRDD 387
+GR G+ + + V RDD
Sbjct: 370 AGRRGQGALVV-LVARDD 386
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. Length = 742 |
| >gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 288 TRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347
T++ + LTD ++ V H ++D R I+R+ R G VL+ +LL G+D+ +
Sbjct: 451 TKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPE 510
Query: 348 VSLV 351
VSLV
Sbjct: 511 VSLV 514
|
All proteins in this family for wich functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 655 |
| >gnl|CDD|224121 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 310 HGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY----LH 365
HG M +D +M F+ G +L+ T ++ G+DV ++++ + E + LH
Sbjct: 514 HGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIEN----AERFGLAQLH 569
Query: 366 RI-GRSGRFGRKGVAI 380
++ GR GR + +
Sbjct: 570 QLRGRVGRGDLQSYCV 585
|
Length = 677 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 100.0 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 100.0 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 100.0 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 100.0 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 100.0 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 100.0 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 100.0 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 100.0 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 100.0 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 100.0 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 100.0 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 100.0 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 100.0 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 100.0 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 100.0 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 100.0 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 100.0 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 100.0 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.98 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.97 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.97 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.97 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.97 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.97 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.97 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.97 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.96 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.96 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.96 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.96 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.95 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.95 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.95 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.95 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.94 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.94 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.94 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.93 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.93 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.93 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.92 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.92 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.92 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.92 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.92 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.92 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 99.91 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.91 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.9 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.9 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.89 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.89 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.89 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.89 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 99.89 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.88 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.88 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.88 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.87 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.87 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.86 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.85 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.85 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 99.83 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.83 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.82 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 99.82 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.81 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.8 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.8 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.79 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.79 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.76 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.75 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.75 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.74 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.74 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.73 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.73 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.72 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.71 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.7 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 99.68 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 99.67 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 99.65 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.63 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.6 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 99.6 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.54 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.53 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 99.52 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 99.52 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 99.47 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 99.32 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 99.32 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 99.28 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 99.16 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 99.11 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.07 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 99.0 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 98.99 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 98.84 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.82 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 98.77 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.76 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 98.75 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 98.73 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.63 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 98.62 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.61 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 98.51 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 98.5 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 98.37 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 98.37 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 98.36 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 98.33 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 98.31 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 98.28 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 98.27 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 98.22 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 98.16 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 98.14 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 98.09 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 98.03 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 98.03 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 97.96 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.91 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 97.87 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.83 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 97.83 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.76 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 97.74 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 97.72 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 97.7 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.68 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.63 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.61 | |
| PRK06526 | 254 | transposase; Provisional | 97.59 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.58 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.56 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 97.52 | |
| PRK08181 | 269 | transposase; Validated | 97.49 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 97.41 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.4 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.4 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 97.37 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 97.35 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.26 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 97.25 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.18 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 97.18 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 97.17 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 97.17 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.13 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 97.12 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 97.1 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 97.1 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 97.1 | |
| COG1435 | 201 | Tdk Thymidine kinase [Nucleotide transport and met | 97.09 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 97.06 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 97.05 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 97.04 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 97.04 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 97.01 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 97.01 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 96.99 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 96.98 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 96.94 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 96.94 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 96.94 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 96.92 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 96.92 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 96.91 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 96.91 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 96.91 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 96.88 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 96.88 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 96.87 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 96.84 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 96.83 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 96.83 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 96.82 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 96.82 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 96.81 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 96.8 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 96.8 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 96.77 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 96.77 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 96.76 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 96.76 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 96.75 | |
| PRK08727 | 233 | hypothetical protein; Validated | 96.75 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 96.74 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.72 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 96.72 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.69 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 96.69 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 96.68 | |
| PF13173 | 128 | AAA_14: AAA domain | 96.67 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 96.65 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 96.65 | |
| PRK12377 | 248 | putative replication protein; Provisional | 96.64 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 96.62 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 96.62 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 96.61 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 96.59 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 96.59 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 96.58 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 96.58 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 96.57 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 96.56 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 96.54 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 96.54 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 96.53 | |
| COG4626 | 546 | Phage terminase-like protein, large subunit [Gener | 96.52 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.52 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 96.5 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 96.48 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 96.47 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 96.45 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 96.45 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 96.45 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 96.44 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.43 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.41 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 96.41 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 96.38 | |
| PRK08116 | 268 | hypothetical protein; Validated | 96.37 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 96.37 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 96.36 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.36 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 96.34 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 96.33 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 96.33 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 96.32 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 96.29 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 96.29 | |
| PTZ00293 | 211 | thymidine kinase; Provisional | 96.28 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.26 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.22 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 96.22 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 96.21 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 96.21 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 96.2 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 96.19 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.19 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 96.18 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 96.15 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.15 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 96.14 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 96.13 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.13 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 96.12 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 96.08 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.07 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 96.05 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 96.02 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 95.98 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 95.97 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 95.95 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 95.94 | |
| COG3972 | 660 | Superfamily I DNA and RNA helicases [General funct | 95.89 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 95.88 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 95.88 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 95.87 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 95.87 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 95.8 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 95.79 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 95.79 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 95.77 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 95.75 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 95.74 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 95.67 | |
| COG1702 | 348 | PhoH Phosphate starvation-inducible protein PhoH, | 95.64 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 95.61 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 95.61 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 95.61 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 95.6 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 95.6 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 95.59 | |
| PF05729 | 166 | NACHT: NACHT domain | 95.58 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 95.57 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 95.57 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 95.56 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 95.55 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 95.55 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 95.53 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 95.51 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 95.51 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 95.51 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 95.5 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 95.5 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 95.44 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 95.4 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 95.39 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 95.38 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 95.37 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 95.37 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 95.36 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 95.35 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 95.33 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 95.28 | |
| PRK06620 | 214 | hypothetical protein; Validated | 95.25 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 95.24 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 95.18 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 95.16 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 95.16 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 95.15 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 95.13 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 95.13 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 95.1 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 95.1 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 95.09 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 95.06 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 95.06 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 95.05 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 95.03 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 94.92 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 94.91 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 94.91 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 94.9 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 94.9 | |
| PF03237 | 384 | Terminase_6: Terminase-like family; InterPro: IPR0 | 94.9 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 94.86 | |
| PHA00012 | 361 | I assembly protein | 94.82 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 94.8 | |
| TIGR02784 | 1141 | addA_alphas double-strand break repair helicase Ad | 94.76 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 94.75 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 94.74 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 94.73 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 94.72 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 94.64 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 94.64 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 94.63 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 94.63 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 94.61 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 94.57 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 94.51 | |
| PHA03372 | 668 | DNA packaging terminase subunit 1; Provisional | 94.51 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 94.49 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 94.45 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 94.39 | |
| PF02572 | 172 | CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase | 94.35 | |
| KOG1807 | 1025 | consensus Helicases [Replication, recombination an | 94.34 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 94.34 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 94.33 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 94.32 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 94.31 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 94.27 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 94.23 | |
| PHA00350 | 399 | putative assembly protein | 94.22 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 94.18 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 94.1 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 94.08 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 93.98 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 93.96 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 93.94 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 93.88 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 93.88 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 93.81 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 93.8 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 93.76 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 93.75 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 93.73 | |
| PRK06321 | 472 | replicative DNA helicase; Provisional | 93.72 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 93.71 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 93.71 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 93.69 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 93.67 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 93.66 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 93.65 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 93.49 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 93.49 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 93.47 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 93.46 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 93.45 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 93.43 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 93.43 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 93.4 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 93.38 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 93.38 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 93.34 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 93.33 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 93.27 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 93.26 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 93.21 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 93.19 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 93.12 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 93.09 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 93.06 | |
| COG1074 | 1139 | RecB ATP-dependent exoDNAse (exonuclease V) beta s | 93.05 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 93.04 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 93.01 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 92.95 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 92.93 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 92.86 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 92.85 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 92.82 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 92.8 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 92.79 | |
| PRK13764 | 602 | ATPase; Provisional | 92.76 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 92.75 | |
| PRK09087 | 226 | hypothetical protein; Validated | 92.71 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 92.69 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 92.69 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 92.68 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 92.64 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 92.63 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 92.56 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 92.54 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 92.45 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 92.28 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 92.24 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 92.2 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 92.19 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 92.18 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 92.11 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 92.09 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 92.03 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 92.01 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 91.99 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 91.95 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 91.95 | |
| PF01935 | 229 | DUF87: Domain of unknown function DUF87; InterPro: | 91.8 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 91.79 | |
| PF01580 | 205 | FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 | 91.78 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 91.77 |
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-65 Score=414.98 Aligned_cols=377 Identities=68% Similarity=1.064 Sum_probs=362.9
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
.+...|+.+++.+++.+.+.+.||..|..+|.+|++++++|++++.++..|+|||.++.+.++..+.-......++++.|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsP 103 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSP 103 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999887777776655554568999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
|++|+.|..+.+..++..+++.+..+.||.+...+.+.+..+.+++.+||+..++++++..+....++++|+|||+.+++
T Consensus 104 TRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~ 183 (400)
T KOG0328|consen 104 TRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLN 183 (400)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHH
Confidence 99999999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
.++..++..+++.+|++.|++++|||++.+..+....++.+|+.+...+.+.+.+++++++..++..+|+.+.|..+...
T Consensus 184 kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~ 263 (400)
T KOG0328|consen 184 KGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDT 263 (400)
T ss_pred hhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
..-..++|||+++..+.++.+.+.+.++.+...||+|.+++|+++..+|++|+.+|||+|++-++|+|+|.++.||+++.
T Consensus 264 LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL 343 (400)
T KOG0328|consen 264 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL 343 (400)
T ss_pred hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
|.+...|+||+||.||.|+.|.++-|+...|...+.+++++|...+++||+++.+++
T Consensus 344 P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 344 PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred CccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999998875
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=421.18 Aligned_cols=371 Identities=35% Similarity=0.549 Sum_probs=353.0
Q ss_pred ccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEE
Q 015093 33 VSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQAL 112 (413)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~l 112 (413)
....+...+|.++++++.+.+++...++..|+++|.++++.++.|+++|..+.||||||.+|++||++.+......+.++
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~l 133 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFAL 133 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEE
Confidence 34466679999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred EEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHH-cCCCCCCCccEEEEccc
Q 015093 113 VLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLR-RQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 113 vl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~-~~~~~~~~~~~iIiDE~ 191 (413)
|++||++|+.|..+.+..++...++.+..+.||.+...+...+...++|+|+||+.|.+++. .+.+.+..++++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999999888888888899999999999999998 57888999999999999
Q ss_pred hhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHH
Q 015093 192 DEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLC 271 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (413)
|++++.+|...+..+++.+|...+.+++|||++.....+.......|..+......-..+.+.+.+..++. .++...|.
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV 292 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLV 292 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHH
Confidence 99999999999999999999999999999999999999999999999999988888888888888888876 57888899
Q ss_pred HHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEE
Q 015093 272 DLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 351 (413)
Q Consensus 272 ~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v 351 (413)
.+++...++.++|||++...+..++-.|...|+.+..+||.|++..|.-.++.|++|..+||+||+++++|+|+|.+++|
T Consensus 293 ~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 293 YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q 015093 352 INYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEE 404 (413)
Q Consensus 352 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
|+||.|.+..+|+||+||++|+|.+|.++.+++.-|.+.+..++..+.+....
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999987755
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-62 Score=439.74 Aligned_cols=372 Identities=37% Similarity=0.612 Sum_probs=344.7
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc------ccCceeEEE
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------ESLQCQALV 113 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~------~~~~~~~lv 113 (413)
..|+.++++++....++..||..|+|+|..+++.++.|+|++..+.||||||++|++|++.++.. ...++.+||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 37899999999999999999999999999999999999999999999999999999999998875 344678999
Q ss_pred EcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
++||++|+.|...++..++....++..+++||..+..+...+..+.+|+|+||+.|.++++.....++.+.++|+||||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCc--cccCCceEEEEEeCccccHHHHH
Q 015093 194 MLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE--LTLEGIKQFHVNVDKEEWKLDTL 270 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 270 (413)
|++.+|...+.+++..++ ...|.++.|||++.+...+...++.++..+.+.... .....+.++...++ ...+...+
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l 329 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKL 329 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHH
Confidence 999999999999999994 455799999999999999999999999888877543 44566777777776 45677777
Q ss_pred HHHHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 271 CDLYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 271 ~~~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
..++... ..+|+||||++++.|+.+.+.|...++++..+||+.++.+|+.+++.|++|+..|||||+++++|+|+|+
T Consensus 330 ~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~d 409 (519)
T KOG0331|consen 330 GKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPD 409 (519)
T ss_pred HHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcc
Confidence 7777665 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+++||++++|.+..+|+||+||+||+|+.|.+++|++..+......+.+.+....+.+|..+.++
T Consensus 410 V~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~ 474 (519)
T KOG0331|consen 410 VDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEY 474 (519)
T ss_pred ccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887653
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=445.37 Aligned_cols=373 Identities=31% Similarity=0.467 Sum_probs=331.4
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-------cCceeE
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-------SLQCQA 111 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-------~~~~~~ 111 (413)
..+|+++++++.+.+.+...||..|+++|.++++.++.|+|+++++|||||||++|++++++.+... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3689999999999999999999999999999999999999999999999999999999999877432 124689
Q ss_pred EEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccc
Q 015093 112 LVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 112 lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 191 (413)
||++|+++|+.|+.+.+..+....++++..+.|+.....+...+...++|+|+||+.|...+....+.+.+++++|+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999988899999999998877777777778899999999999999888888899999999999
Q ss_pred hhhhccCcHHHHHHHHhhCCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHH
Q 015093 192 DEMLSRGFKDQIYDIFQHLPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
|++.+.++...+..++..++. ..+.+++|||++..........+..+..+...........+.+..... ....+...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHH
Confidence 999999999999999988874 456789999999888888888888888777665554445555444433 33567778
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 246 l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 246 LQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 88888877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||++++|.+...|.||+||+||.|+.|.+++|+++.+...+..+.+++...++..+.+..++
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 388 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYDSDAL 388 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCChhhh
Confidence 999999999999999999999999999999999999999999999999988877666554433
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=453.54 Aligned_cols=376 Identities=33% Similarity=0.523 Sum_probs=332.8
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-----cCcee
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-----SLQCQ 110 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~ 110 (413)
..+..+|+.+++++.+.+.+.+.||..|+++|.++++.+++|+++++++|||||||++|++|++..+... ..++.
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~ 205 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPI 205 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcE
Confidence 3446789999999999999999999999999999999999999999999999999999999998765432 23568
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 111 ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 111 ~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
+||++||++|+.|+.+.+++++...++++...+|+.....+...+...++|+|+||+.|.+.+......+..+++||+||
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 99999999999999999999998888999999999887777666777899999999999999998878888899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcC-CCEEEEecCCcc-ccCCceEEEEEeCccccHHH
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMN-KPVRILVKRDEL-TLEGIKQFHVNVDKEEWKLD 268 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 268 (413)
||++.+.++...+.+++..+++..|++++|||++.....+...++. .++.+....... ....+.+....... ..+..
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~k~~ 364 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HEKRG 364 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hhHHH
Confidence 9999999999999999999998999999999999888888887775 466555543332 22344444444433 45666
Q ss_pred HHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 269 TLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 269 ~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
.+..++... ..+++||||++++.|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 365 ~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 365 KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcc
Confidence 677777654 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
++++||+++.|.+..+|+||+||+||.|+.|.+++|+++.+......+.+.+....+.+|.++.++
T Consensus 445 ~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 445 DVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998875
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-59 Score=442.47 Aligned_cols=363 Identities=36% Similarity=0.608 Sum_probs=331.0
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+|+.+++++.+.+.+...||..|+|+|.++++.+..|+++++++|||||||++|++++++.+.......+++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999998876555668999999999
Q ss_pred HHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 120 LAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
|+.|+.++++.+.... +..+..++|+.....+...+...++|+|+||+.|..++.+....+.++++||+||||++.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999987654 688999999988877777777888999999999999999888888899999999999999999
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcC
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
+...+..++..++...+++++|||+++....+...++..+..+...... ....+.+.+...+. ..+...+..++....
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~ 241 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP-DERLPALQRLLLHHQ 241 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc-HHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999888899998888877765544 33446666666655 348888888888888
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 358 (413)
.+++||||++++.++.+++.|.+.++.+..+||++++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q 015093 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEE 404 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
+...|+||+||+||.|+.|.+++++.+.+...+..+.+++...++.
T Consensus 322 ~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999999998876553
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-59 Score=440.86 Aligned_cols=369 Identities=44% Similarity=0.697 Sum_probs=341.7
Q ss_pred cccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCcee-E
Q 015093 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQ-A 111 (413)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~-~ 111 (413)
........|+.+++++.+.+.+.+.||..|+|+|..+++.++.|+|+++.++||||||.+|++|+++.+.. ...... +
T Consensus 23 ~~~~~~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~a 102 (513)
T COG0513 23 GEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSA 102 (513)
T ss_pred ccccccCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCce
Confidence 33344467999999999999999999999999999999999999999999999999999999999999763 222222 9
Q ss_pred EEEcccHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 112 LVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 112 lvl~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
||++||++|+.|..+.+..++... ++.+..++||.....+...+..+++|+|+||+.+++++.+..+.+..+.++|+||
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 999999999999999999999988 7999999999998888777777799999999999999999999999999999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCcc--ccCCceEEEEEeCccccHHH
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFHVNVDKEEWKLD 268 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 268 (413)
|+++.+.+|...+..++..++.+.|.+++|||++.....+.+.++.+|..+....... ....+.+.+..+.....+..
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999998777775554 77889999999887667999
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 269 TLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 269 ~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
.|..++......++||||++++.++.++..|...|+.+..+||++++.+|.+.++.|++|+.+|||||+++++|+|+|++
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhcccc
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYNVVI 402 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 402 (413)
.+||+++.|.+...|+||+||+||+|..|.++.|+++. +...+..+.+.+....
T Consensus 343 ~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~ 397 (513)
T COG0513 343 SHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKL 397 (513)
T ss_pred ceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999986 8889999999887653
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-59 Score=434.83 Aligned_cols=383 Identities=70% Similarity=1.108 Sum_probs=344.6
Q ss_pred cccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCce
Q 015093 30 DFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQC 109 (413)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~ 109 (413)
.....+.+...+|+.+++++.+.+.+...||..|+++|.++++.+..++++++.+|||||||++|+++++..+.....+.
T Consensus 18 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~ 97 (401)
T PTZ00424 18 TIESNYDEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNAC 97 (401)
T ss_pred ccccccccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCc
Confidence 34445666789999999999999999999999999999999999999999999999999999999999998876555566
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEc
Q 015093 110 QALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLD 189 (413)
Q Consensus 110 ~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiD 189 (413)
++||++|+++|+.|+.+.+..++...+..+..+.|+.....+.......++|+|+||+.+...+......+.++++||+|
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 89999999999999999999998877888888888887766666666778999999999999998877788889999999
Q ss_pred cchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHH
Q 015093 190 EADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 190 E~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
|+|++.+.++...+.++++..+...+++++|||+++........++..+..+...........+.+++...+....+...
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHH
Confidence 99999888888889999999999999999999999888888888888887777666666667777777766665667777
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..++......+++|||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 258 l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~ 337 (401)
T PTZ00424 258 LCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS 337 (401)
T ss_pred HHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC
Confidence 88888777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||+++.|.|...|+||+||+||.|+.|.|++++++.+...+..+.+.+...++++|+...+.
T Consensus 338 ~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 400 (401)
T PTZ00424 338 LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVADY 400 (401)
T ss_pred EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhhc
Confidence 999999999999999999999999999999999999999999999999999999988776543
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-59 Score=439.25 Aligned_cols=363 Identities=36% Similarity=0.614 Sum_probs=326.2
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc------CceeEEEE
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES------LQCQALVL 114 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~------~~~~~lvl 114 (413)
+|+.+++++++.+.+.+.||..|+++|.++++.++.++++++++|||||||++|++|+++.+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 688899999999999999999999999999999999999999999999999999999998875432 12479999
Q ss_pred cccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh
Q 015093 115 APTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 194 (413)
+||++|+.|+.+.++.+....++.+..+.|+.....+...+...++|+|+||+.|.+.+......++.+++||+||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888889999999998877766666778899999999999999888888889999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHH
Q 015093 195 LSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY 274 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
.+.++...+..++..++...+.+++|||+++....+...++.++..+...........+.+.....+. ..+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888888877665555455555555554443 45566677777
Q ss_pred HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc
Q 015093 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 275 ~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
......++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q 015093 355 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEE 404 (413)
Q Consensus 355 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
+.|.+..+|+||+||+||.|..|.++++++..+...+..+.+.+...++.
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999998887643
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-59 Score=442.93 Aligned_cols=375 Identities=32% Similarity=0.534 Sum_probs=331.6
Q ss_pred ccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-------ccC
Q 015093 35 YDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-------ESL 107 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-------~~~ 107 (413)
..++..+|+.+++++.+.+.+...||..|+++|.++++.+++|+++++++|||||||++|++|++..+.. ...
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 4466788999999999999999999999999999999999999999999999999999999999876532 224
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
+++++|++||++|+.|+.+.++.+....++.+..+.||.....+...+..+++|+|+||+.|.+.+......+.++++||
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 56899999999999999999999988888888888888877766666667789999999999999998888889999999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||||++.+.++...+..++..++ ..|++++|||+++....+...+..++..+...........+.+....... ..+.
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~-~~k~ 353 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET-KQKK 353 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-hhHH
Confidence 999999999999999999988885 57999999999998888888888888877766555444555555555543 3455
Q ss_pred HHHHHHHHhcC--CCcEEEEEcCcccHHHHHHHHhh-CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 268 DTLCDLYETLA--ITQSVIFVNTRRKVDWLTDQMRS-RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 268 ~~l~~~~~~~~--~~~~lIf~~~~~~a~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
..+..++.... .+++||||+++..++.+++.|.. .++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|
T Consensus 354 ~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiD 433 (518)
T PLN00206 354 QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVD 433 (518)
T ss_pred HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCC
Confidence 66666665442 36899999999999999999975 5889999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q 015093 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVAD 411 (413)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
+|++++||+++.|.+..+|+||+||+||.|..|.+++|+++.+...+..+.+.+....+.+|.++++
T Consensus 434 ip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 434 LLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred cccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999876
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-59 Score=447.41 Aligned_cols=367 Identities=39% Similarity=0.604 Sum_probs=333.6
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..+|+.+++++.+.+++..+||.+|+++|.++++.+++++++++.+|||||||++|.+++++.+......+++||++||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 35689999999999999999999999999999999999999999999999999999999998886655567899999999
Q ss_pred HHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 119 ELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
+|+.|+.+.+..+.... ++.+..++|+.....+...+...++|+|+||+.+.+++....+.+.++++||+||||++.+.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 99999999999887655 78888999998877777777778899999999999999988888899999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
++...+..++..++...+++++|||++.....+...++.++..+.........+.+.+.+..... ..+...+..++...
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~-~~k~~~L~~~L~~~ 243 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEAE 243 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech-hhHHHHHHHHHHhc
Confidence 99999999999999999999999999999988999999988887776666555666666655543 45778888888887
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
...++||||+++..++.+++.|++.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P 323 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q 015093 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
.+...|+||+||+||.|+.|.+++++++.+...+..+.+.+...++.++
T Consensus 324 ~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 324 MDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred CCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceec
Confidence 9999999999999999999999999999999999999998888776653
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=434.45 Aligned_cols=364 Identities=34% Similarity=0.550 Sum_probs=330.3
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc----cCceeEEEEcc
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE----SLQCQALVLAP 116 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~----~~~~~~lvl~P 116 (413)
.|+.+++++.+.+.+...||..|+++|.++++.++.|+++++++|||+|||++|++++++.+... ....+++|++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 68899999999999999999999999999999999999999999999999999999999876432 22458999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
+++|+.|+.+.+..+....++.+..++|+.....+...+...++|+|+||+.|.+.+....+.+..+++||+||||++.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999999889999999999988777777777889999999999999998888888899999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCCh-hHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE 275 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
.++...+..+....+...+++++|||+.. ....+...++..+..+...........+.+++...+....+...+..+++
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999888999999999975 46777788888888777666555556677777766666678888888888
Q ss_pred hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 276 TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 276 ~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
....+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 76778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccccc
Q 015093 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEE 404 (413)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (413)
.|.|...|+||+||+||.|..|.+++++...|...+..+.+++...+..
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999988776543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=442.25 Aligned_cols=365 Identities=33% Similarity=0.527 Sum_probs=325.2
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-------CceeEEE
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-------LQCQALV 113 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-------~~~~~lv 113 (413)
.|+.+++++.+.+.|.+.||..|+++|.++++.+++|+|+++.+|||||||++|++++++.+.... ..+++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 588999999999999999999999999999999999999999999999999999999998774321 2468999
Q ss_pred EcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccch
Q 015093 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEAD 192 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h 192 (413)
++||++|+.|+++.+.+++...++.+..++|+.....+...+...++|+|+||+.|.+.+... .+.+..+++||+||||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 999999999999999999988899999999999887777777778899999999999988765 3567788999999999
Q ss_pred hhhccCcHHHHHHHHhhCCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHH
Q 015093 193 EMLSRGFKDQIYDIFQHLPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTL 270 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (413)
++.+.++...+..++..++. ..|++++|||++.....+...++..+..+...........+.+.+... ....+...+
T Consensus 170 ~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~L 248 (572)
T PRK04537 170 RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQTLL 248 (572)
T ss_pred HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHHHH
Confidence 99999999999999998886 678999999999888888888888877666555544445555544433 335677788
Q ss_pred HHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCE
Q 015093 271 CDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 271 ~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
..++......++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+|||||+++++|||+|++++
T Consensus 249 ~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~ 328 (572)
T PRK04537 249 LGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKY 328 (572)
T ss_pred HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCE
Confidence 88888777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q 015093 351 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 351 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
||+++.|.+...|+||+||+||.|+.|.+++|+++.+...+..+.+++...++..|
T Consensus 329 VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~ 384 (572)
T PRK04537 329 VYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEP 384 (572)
T ss_pred EEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999999999999999999999999999999999999999888765443
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-57 Score=427.96 Aligned_cols=365 Identities=33% Similarity=0.525 Sum_probs=323.5
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-------Cce
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-------LQC 109 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-------~~~ 109 (413)
+....|..+++++.+.+.|.+.||..|+++|.++++.+..|+|+++.+|||||||++|++++++.+.... ...
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3456788899999999999999999999999999999999999999999999999999999998875542 145
Q ss_pred eEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEE
Q 015093 110 QALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVL 188 (413)
Q Consensus 110 ~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIi 188 (413)
++||++||++|+.|+.+.++.+....++.+..++|+.........+ ...++|+|+||++|......+...+.++++||+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 8999999999999999999999888889999999987665554443 346899999999999988888888889999999
Q ss_pred ccchhhhccCcHHHHHHHHhhCCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccH
Q 015093 189 DEADEMLSRGFKDQIYDIFQHLPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWK 266 (413)
Q Consensus 189 DE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (413)
||+|.+.+.++...+..+++.++. ..+++++|||.+.+.......+...+..+...........+.+....... ..+
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG-SDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-hhH
Confidence 999999988888889999888864 56899999999988888888888888877666655555555555444443 456
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
...+..++......++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|++++||||+++++|+|+|
T Consensus 323 ~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 323 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 77788888877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVI 402 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (413)
++++||+++.|.|..+|+||+||+||.|++|.+++|+++.|...+..+.++++..+
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999998876
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=399.62 Aligned_cols=366 Identities=33% Similarity=0.539 Sum_probs=341.9
Q ss_pred cccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhc---------cc
Q 015093 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL---------DY 104 (413)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l---------~~ 104 (413)
..+++..+|+..+++.++++.+...|+..|+|+|+.+++..+.++++|-.+.||||||.++++|++..+ .+
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en 318 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLEN 318 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhh
Confidence 466778999999999999999999999999999999999999999999999999999999999887654 33
Q ss_pred ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 015093 105 ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIR 184 (413)
Q Consensus 105 ~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
...++.++++.||++|++|..++-.+++...++++..+.||.....+.-.+..+|.|+|+||+.|.+.+.+..+.++.+.
T Consensus 319 ~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qct 398 (673)
T KOG0333|consen 319 NIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCT 398 (673)
T ss_pred cccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCc
Confidence 44578999999999999999999999999999999999999998877667778999999999999999999999999999
Q ss_pred EEEEccchhhhccCcHHHHHHHHhhCCCC-------------------------ceEEEEeeeCChhHHHHHHHhcCCCE
Q 015093 185 MFVLDEADEMLSRGFKDQIYDIFQHLPGK-------------------------IQVGVFSATMPPEALEITRKFMNKPV 239 (413)
Q Consensus 185 ~iIiDE~h~~~~~~~~~~~~~~~~~~~~~-------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~ 239 (413)
++|+|||+++.+.+|...+.+++..+|.. .+.+.+|||+++....+++.|+..|+
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 99999999999999999999999998741 57899999999999999999999999
Q ss_pred EEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHH
Q 015093 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD 319 (413)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~ 319 (413)
.+.+.......+.+.+.+..+... .+...|..+++.....+++||+|+++.|+.+++.|.+.|+++..+||+-++++|+
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~ed-~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe 557 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVSED-EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRE 557 (673)
T ss_pred EEEeccCCCCccchheEEEEecch-HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHH
Confidence 999999888888899888888774 4699999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhc
Q 015093 320 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYN 399 (413)
Q Consensus 320 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (413)
.+++.|++|..+|||||+++++|||+|++.+||+++.+.|..+|.|||||+||+|+.|.++.|+++.|...++++.+.+-
T Consensus 558 ~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 558 NALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred HHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred c
Q 015093 400 V 400 (413)
Q Consensus 400 ~ 400 (413)
.
T Consensus 638 e 638 (673)
T KOG0333|consen 638 E 638 (673)
T ss_pred H
Confidence 3
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=393.45 Aligned_cols=360 Identities=34% Similarity=0.552 Sum_probs=335.0
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLA 115 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~ 115 (413)
..+|.+++|+-++.+++..+||..|+|+|...|+-.+-|++++-++.||||||.+|.+|+++++.-.. ...++||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999986543 235899999
Q ss_pred ccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhh
Q 015093 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~ 194 (413)
||++|+.|.+...++++...++.+.+..||.+...+...+...++|+|+||+.|.+++.+ .++.++++.++|+|||+++
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 4678999999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc--cccHHHHHHH
Q 015093 195 LSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK--EEWKLDTLCD 272 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 272 (413)
+..+|...++++++.++++.|.+++|||+...+.+++..-+..|+.+.+.+.....+.+.+.+..... ....-..+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888877776653 2345567777
Q ss_pred HHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE
Q 015093 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 273 ~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
++...-..+++||+.+++.|..+.-.|.-.|+++.-+||.+++.+|-+.++.|++++++|||||+++++|+|++++.+||
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 78777778999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHh
Q 015093 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFY 398 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 398 (413)
++..|.+...|+||+||+.|+|+.|.+++++.+.+...++.+.+.-
T Consensus 500 Ny~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 500 NYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred eccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999888877664
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-57 Score=374.67 Aligned_cols=369 Identities=39% Similarity=0.656 Sum_probs=351.5
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
.+.|+++.|..++...+...||..|.|+|.++++..+.|++++..+..|+|||.+|++|.++.+......-.+++++|++
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtr 163 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTR 163 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecc
Confidence 57788899999999999999999999999999999999999999999999999999999999998888788999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|..+.+++++...++.+...+||++..++.-.+....+++|+||+.++++..+....++...++|+|||+.+++..
T Consensus 164 elALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 164 ELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred hhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchh
Confidence 99999999999999999999999999999888887788889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcC
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
|...+..++..+|+..|+++.|||.+-....+..+++.+|+.+.. .++..+.++.+++..+.. ..++.-|..++.+..
T Consensus 244 F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INL-M~eLtl~GvtQyYafV~e-~qKvhCLntLfskLq 321 (459)
T KOG0326|consen 244 FQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINL-MEELTLKGVTQYYAFVEE-RQKVHCLNTLFSKLQ 321 (459)
T ss_pred hhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeeh-hhhhhhcchhhheeeech-hhhhhhHHHHHHHhc
Confidence 999999999999999999999999999999999999999998775 456778888888887776 568889999999998
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 358 (413)
-...+|||||.+.++.+++.+.+.|+.+..+|++|.++.|..+...|++|.++.||||+.+.+|+|++.+++||+++.|.
T Consensus 322 INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 322 INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcch
Q 015093 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANV 409 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
++..|.+|+||.||.|..|.++.+++-.|...++.+++.|+..++++|...
T Consensus 402 ~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred CHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 999999999999999999999999999999999999999999999999754
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=381.92 Aligned_cols=352 Identities=33% Similarity=0.540 Sum_probs=313.7
Q ss_pred cCccCCC--CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc--cC---ceeEE
Q 015093 40 DSFDSMG--LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE--SL---QCQAL 112 (413)
Q Consensus 40 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~--~~---~~~~l 112 (413)
.+|+.++ |++++.+++...||...+|+|..+++.+++++|+++.++||||||++|++|+++.+... .. ...++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3455554 56999999999999999999999999999999999999999999999999999988322 11 13589
Q ss_pred EEcccHHHHHHHHHHHHHhhcc-cCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCC--CCCCccEEEE
Q 015093 113 VLAPTRELAQQIEKVMRALGDY-MGVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVL 188 (413)
Q Consensus 113 vl~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIi 188 (413)
||+||++|+.|+.+.+..|... .+++..++.||.+...+...+. ..++|+|+||+.|.+++.+... ...+++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988776 5888999999988877766554 5678999999999999987543 4458999999
Q ss_pred ccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCcc--ccCCceEEEEEeCccccH
Q 015093 189 DEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFHVNVDKEEWK 266 (413)
Q Consensus 189 DE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 266 (413)
||||++.+.+|...++.++..+|+..+..++|||......++.+..+.+|+.+.+..... .+..+...+..+.. ..+
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a-~eK 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA-DEK 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH-HHH
Confidence 999999999999999999999999999999999999999999999999999988877665 67777777777766 679
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
...+.+++.....++++||.++....++.+..|... ...+..+||.+++..|..+++.|.+....+|+||+++++|+|
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 999999999999999999999999999999999875 568999999999999999999999988889999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
+|+++.||++|+|.++..|.||.||++|+|+.|.+++|+.+.+..+..
T Consensus 323 ip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred CCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 999999999999999999999999999999999999999996654433
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-55 Score=381.14 Aligned_cols=356 Identities=31% Similarity=0.483 Sum_probs=321.5
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEE
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVL 114 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl 114 (413)
...|+...+++...++++.+||..++++|..+++.++.|+++++.|.||||||+++++|+++.+.+.. .+-.++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 46788899999999999999999999999999999999999999999999999999999999885543 34569999
Q ss_pred cccHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEccch
Q 015093 115 APTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDEAD 192 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE~h 192 (413)
|||++|+.|.+.+.+.+.... +..+..+.||.+.......+...++|+|+||+.|.+++.+.+ +...+.+++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999888 899999999999888887777799999999999999998754 456667899999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCC-CEEEEecC--CccccCCceEEEEEeCccccHHHH
Q 015093 193 EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNK-PVRILVKR--DELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
++++.+|...+..++..+|...|.+++|||.++.+.+..+..+.. +..+.... ...+.+.+.+-+...+. ...+..
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~-~~~f~l 319 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS-DSRFSL 319 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc-cchHHH
Confidence 999999999999999999999999999999999999988877766 54444433 33344566666665555 345888
Q ss_pred HHHHHHhcCC-CcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 270 LCDLYETLAI-TQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 270 l~~~~~~~~~-~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
+..+++++.. .+++|||++......+++.|+..++++..+||+.++..|-.+..+|++.+..||+||+++++|+|+|++
T Consensus 320 l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 320 LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 8899988866 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHH
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQ 395 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 395 (413)
++||++++|.++.+|+||+||++|.|+.|.++++..+.+..+++.++
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988887
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=382.73 Aligned_cols=365 Identities=30% Similarity=0.470 Sum_probs=329.0
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEE
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVL 114 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl 114 (413)
...|++++++..+.+.|+..+|..|+.+|+++|+..+.|++++-.+.||||||+++++|+++.|...+ .|.-+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999885443 34569999
Q ss_pred cccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccchh
Q 015093 115 APTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEADE 193 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h~ 193 (413)
.||++|+.|+++.+.+.+...+.+.+++.||.+.......+ ...+|+||||+.|++++... .+..+++.++|+|||++
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999999866655544 45799999999999999875 45677899999999999
Q ss_pred hhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecC--CccccCCceEEEEEeCccccHHHHHH
Q 015093 194 MLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR--DELTLEGIKQFHVNVDKEEWKLDTLC 271 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (413)
+++.+|...+..++..+|...|.+++|||......++++..+.+|..+.+.. ....|..+.+.+..++. ..++..|.
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-~~Ki~~L~ 305 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-EDKIDMLW 305 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh-hhHHHHHH
Confidence 9999999999999999999999999999999999999999999988776653 34667788888887776 68999999
Q ss_pred HHHHhcCCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 272 DLYETLAITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 272 ~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
.+++.+...+.|||+.|.+++..+++.+.+. |..+..+||.|++..|.++...|...+.-||+||+++++|+|+|.++
T Consensus 306 sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 306 SFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 9999999999999999999999999999875 77899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecccc-HHHHHHHHHHhccccccCC
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-DRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 406 (413)
+||.+++|.++.+|+||+||+.|.+..|.+++++.+++ ..++..++... ...+.+.
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~ 442 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIK 442 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhc
Confidence 99999999999999999999999999999999999998 55666665543 4344333
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=363.73 Aligned_cols=368 Identities=36% Similarity=0.507 Sum_probs=325.3
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..+|+.+|+++|+.+.++++|+..|+|+|..+++.|+.|+|++=+|.||||||.++.+|+++.|.....+..++|++||+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999898999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC----CCCCCCccEEEEccchhh
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ----SLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~iIiDE~h~~ 194 (413)
+|+-|..+.|..++...++++.++.||...-.+...+...++++++||+.+..++... .+.++.+.++|+|||+.+
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence 9999999999999999999999999999988887788888999999999999888765 344667899999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCC--CEEEEecCCccccCCceEEEEEeCccccHHHHHHH
Q 015093 195 LSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNK--PVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
.+..|...+..+....|...|.+++|||+.........--... ...+.........+.+.+-+..++. ..+..-+..
T Consensus 166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkdaYLv~ 244 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDAYLVH 244 (442)
T ss_pred hccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch-hhhHHHHHH
Confidence 9999999999999999999999999999987665544333332 2333444455555666666665554 334444444
Q ss_pred HHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 273 LYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 273 ~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+++.. ..+.++||+++..+|+.++..|+..++.+..+||.|++.+|-..+..|+++..+|||||+++++|+|+|.+.
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 44433 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPA 407 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
.||+++.|.++.+|+||+||..|+|+.|.++.++++.|.+.+..+++-.++.+.+.+.
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999888776553
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-54 Score=381.96 Aligned_cols=372 Identities=34% Similarity=0.516 Sum_probs=337.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC----------c
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL----------Q 108 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~----------~ 108 (413)
+..|+...+.+.+...++..++..|+|+|+-+++.+..|++++++|+||||||.++++|++..+..... .
T Consensus 73 i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 73 IPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred cccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 457888889999999999999999999999999999999999999999999999999999998855422 4
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVL 188 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIi 188 (413)
+.++|++||++|+.|.+++.+++.....+.....+|+.+...+......+|+|+++||+.|.+.++...+.+++++++|+
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 78999999999999999999999988899999999998888887888889999999999999999999999999999999
Q ss_pred ccchhhhc-cCcHHHHHHHHhhCCC----CceEEEEeeeCChhHHHHHHHhcCC-CEEEEecCCccccCCceEEEEEeCc
Q 015093 189 DEADEMLS-RGFKDQIYDIFQHLPG----KIQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNVDK 262 (413)
Q Consensus 189 DE~h~~~~-~~~~~~~~~~~~~~~~----~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (413)
|||+++.+ .+|...+.+++..... ..|.+++|||.+.........+..+ .+.+.+..-....+.+.+....+..
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 99999998 8899999999887743 6789999999998888777777766 5666666677777888888888887
Q ss_pred cccHHHHHHHHHHhcC----CC-----cEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEE
Q 015093 263 EEWKLDTLCDLYETLA----IT-----QSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL 333 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~~----~~-----~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 333 (413)
. .+...|.+++.... .+ +++|||.+++.|..++..|...++++..+||.-++.+|.+.+..|++|+..+|
T Consensus 313 ~-~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 313 M-EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred h-hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 4 45666666665332 33 79999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q 015093 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVAD 411 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
|||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.++.|++..+....+.+.+.+....+.+|.||.+
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=363.48 Aligned_cols=383 Identities=72% Similarity=1.081 Sum_probs=361.1
Q ss_pred CCcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC
Q 015093 28 GQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL 107 (413)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~ 107 (413)
+..+..+|.+...+|++++|.+.+++.+..+||..|..+|..|+..+.+|.++++.+.+|+|||.++..+++..+.....
T Consensus 14 ~~~iesn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~k 93 (397)
T KOG0327|consen 14 EGVIESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK 93 (397)
T ss_pred cccccccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999998877766
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH-HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ-RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMF 186 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~i 186 (413)
...++++.|+++|+.|.......++...+.++..+.|+.....+. ......++|+++||+.....+....+....+++.
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmf 173 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMF 173 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEE
Confidence 778999999999999999999999999999999999988877444 4445568999999999999998888888889999
Q ss_pred EEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccH
Q 015093 187 VLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWK 266 (413)
Q Consensus 187 IiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (413)
|+||++++...++...+..+++.++++.|++++|||.+.+.....+.++.+|+.+.....+....++.+++..+...+ +
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k 252 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-K 252 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988755 8
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
...+..+.. .....+||||++..+..+...|...+..+..+|+++.+.+|..++..|+.|..+|||+|..+++|+|+.
T Consensus 253 ~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 253 LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 888888888 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
.+..|++++.|.....|++|+||+||.|++|.++.++++.+...++.+.+||...++++|++..+|+
T Consensus 331 ~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 331 QVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred hcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998875
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-53 Score=369.20 Aligned_cols=380 Identities=32% Similarity=0.479 Sum_probs=354.8
Q ss_pred ccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-----ccC
Q 015093 33 VSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-----ESL 107 (413)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-----~~~ 107 (413)
.+...+..+|+.+++++.+..++.+..|.+|+++|.++++..++|++++=.+.||||||.+++.+++..+.. ...
T Consensus 216 ~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~ 295 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE 295 (731)
T ss_pred CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC
Confidence 345566789999999999999999999999999999999999999999999999999999999888876632 244
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
++..+|+|||++|+.|.+.++++|+..+++++..++||.....+.+.+..++.|+|+||+.|.+++..+...+.+++++|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 67899999999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||++++.+.+|..++..|....+++.|.+++|||.+..+..+.+.++..|+.+....-......+.+....+.....++
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKL 455 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999998887765566678888888888888888
Q ss_pred HHHHHHHH-hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 268 DTLCDLYE-TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 268 ~~l~~~~~-~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
..|..-+- ....+++|||+.-+..++.++..|+-.++++..+||++.+.+|.+++..|+.+...||++|+.+.+|+|+|
T Consensus 456 ~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 456 NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 87776554 44668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.+..||+++...+...+.||+||.||.|..|.+++++++.|.++...+.+.|.-.-+-+|.++.+|
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=358.87 Aligned_cols=364 Identities=32% Similarity=0.526 Sum_probs=328.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcc------cccCceeEEEEcccH
Q 015093 45 MGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD------YESLQCQALVLAPTR 118 (413)
Q Consensus 45 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~------~~~~~~~~lvl~P~~ 118 (413)
+.-.+++.+.+++.||..|+|+|.++++-++.|.+++.++.||+|||++++++.+-.+. ....++.+|+++||+
T Consensus 225 Fq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptr 304 (629)
T KOG0336|consen 225 FQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTR 304 (629)
T ss_pred HhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccH
Confidence 46778899999999999999999999999999999999999999999999998876653 234567899999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|..-++.++. ..+....+++|+.+...+...+..+.+|+++||+.|.++.......+..+.++|+|||+++++.+
T Consensus 305 eLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMg 383 (629)
T KOG0336|consen 305 ELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMG 383 (629)
T ss_pred HHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhccc
Confidence 99999988887764 34777888888888888888888899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCcccc-CCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTL-EGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
|..++.+++-..+++.+.++.|||+++.+..+...|+.+|..+....-.+.. ..+.+.+ .+.....++..+..+.+..
T Consensus 384 FEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~m 462 (629)
T KOG0336|consen 384 FEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANM 462 (629)
T ss_pred ccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988877665544 3444444 5555567787777777766
Q ss_pred -CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 278 -AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 278 -~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
...|++|||.++..|+.+...|.-.|+....+||+-.+.+|+..++.|++|+++|||+|+.+++|+|++++.||++++.
T Consensus 463 s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDF 542 (629)
T KOG0336|consen 463 SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDF 542 (629)
T ss_pred CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCC
Confidence 4579999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchh
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVA 410 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
|.+..+|.||+||+||+|+.|.++.|++..|-.++..+.+.|+...+.+|++|-
T Consensus 543 P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~ 596 (629)
T KOG0336|consen 543 PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELV 596 (629)
T ss_pred CccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHH
Confidence 999999999999999999999999999999999999999999999999999874
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=355.90 Aligned_cols=361 Identities=31% Similarity=0.463 Sum_probs=319.6
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc------cCceeEEE
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE------SLQCQALV 113 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~------~~~~~~lv 113 (413)
..|++++|++.+++++.+.||..|+-+|..+|+.+++|+|++..|.||||||.+|++|+++.+... ..++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 799999999999999999999999999999999999999999999999999999999999987432 33567999
Q ss_pred EcccHHHHHHHHHHHHHhhcccC--ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEcc
Q 015093 114 LAPTRELAQQIEKVMRALGDYMG--VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDE 190 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE 190 (413)
++||++|++|.+..+.++....+ +++.-+..+.+.......+.+.++|+|+||..+..++..+. .....++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999988765543 44444444444444556677889999999999999998877 5677799999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccc-cCCceEEEEEeCccccHHHH
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT-LEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 269 (413)
|+.+...+|...+.++...+|..+|.++||||.+.++..+.+.++.+|+.......+.. +..+.++...+. ..++...
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHH
Confidence 99999999999999999999999999999999999999999999999998777766665 456777777766 5788888
Q ss_pred HHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCc----------
Q 015093 270 LCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDL---------- 338 (413)
Q Consensus 270 l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~---------- 338 (413)
+..+++-. -.|+.|||+|+++.+..+.-.|.+-|++..+++|.++...|-.++++|+.|-++++|||+.
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 88888754 5689999999999999999999999999999999999999999999999999999999981
Q ss_pred -------------------------cccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHH
Q 015093 339 -------------------------LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLAD 393 (413)
Q Consensus 339 -------------------------~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 393 (413)
..+|+|+..+..|++++.|.++..|+||+||++|++++|.++.|+.+.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 3489999999999999999999999999999999999999999999999888888
Q ss_pred HHHHhccc
Q 015093 394 IQRFYNVV 401 (413)
Q Consensus 394 ~~~~~~~~ 401 (413)
++..+...
T Consensus 418 le~~~~d~ 425 (569)
T KOG0346|consen 418 LESILKDE 425 (569)
T ss_pred HHHHHhhH
Confidence 87777664
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=395.96 Aligned_cols=351 Identities=20% Similarity=0.270 Sum_probs=276.5
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~ 125 (413)
.+++.+.+.+.+.|+..|+++|.++++.+++|+++++.+|||||||++|++|+++.+.... +.++||++|+++|++|+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-RATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEEEcChHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999886543 568999999999999999
Q ss_pred HHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC----CCCCCCccEEEEccchhhhccCcHH
Q 015093 126 KVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ----SLRPDYIRMFVLDEADEMLSRGFKD 201 (413)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~iIiDE~h~~~~~~~~~ 201 (413)
+.++++. ..++++..+.|+...... ..+...++|+++||+++...+... ...++++++||+||+|.+.+ .+..
T Consensus 99 ~~l~~l~-~~~i~v~~~~Gdt~~~~r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~ 175 (742)
T TIGR03817 99 RAVRELT-LRGVRPATYDGDTPTEER-RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGS 175 (742)
T ss_pred HHHHHhc-cCCeEEEEEeCCCCHHHH-HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHH
Confidence 9999987 447788888888775443 344556899999999997543221 12267789999999999754 3454
Q ss_pred HHHHHH-------hhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc------------
Q 015093 202 QIYDIF-------QHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK------------ 262 (413)
Q Consensus 202 ~~~~~~-------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 262 (413)
.+..++ ...+.++|++++|||.++.. .....+++.+..+.. .... +.....+....+.
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i~-~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAVT-EDGS-PRGARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEEC-CCCC-CcCceEEEEecCCcccccccccccc
Confidence 433333 33456789999999998765 456777777755432 2211 1222222221111
Q ss_pred ----cccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC--------CCeeEeecCCCCHHHHHHHHHHHhcCCC
Q 015093 263 ----EEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR--------DHTVSATHGDMDQNSRDIIMREFRSGSS 330 (413)
Q Consensus 263 ----~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 330 (413)
...+...+..+++. +.++||||+|++.++.+++.|++. +..+..+||++++.+|.++++.|++|++
T Consensus 253 r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i 330 (742)
T TIGR03817 253 RRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGEL 330 (742)
T ss_pred ccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCc
Confidence 11233444455543 569999999999999999988763 5678899999999999999999999999
Q ss_pred eEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecc--ccHHHHHHHHHHhccccccC
Q 015093 331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR--DDDRMLADIQRFYNVVIEEL 405 (413)
Q Consensus 331 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 405 (413)
++||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.++++..+ .|...+....++++...+..
T Consensus 331 ~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 331 LGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred eEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999999999999999873 45666777777777766554
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=353.93 Aligned_cols=376 Identities=33% Similarity=0.551 Sum_probs=331.2
Q ss_pred ccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhc--------cccc
Q 015093 35 YDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--------DYES 106 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l--------~~~~ 106 (413)
...+..+|..+.++..+.+.+++.|+..|+|+|.+.++-+++|++.+=.+-||||||+++.+|+.... ....
T Consensus 165 ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~ 244 (610)
T KOG0341|consen 165 IPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARG 244 (610)
T ss_pred CCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccC
Confidence 34567899999999999999999999999999999999999999999999999999999988775432 2345
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHhhccc------CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCC
Q 015093 107 LQCQALVLAPTRELAQQIEKVMRALGDYM------GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180 (413)
Q Consensus 107 ~~~~~lvl~P~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~ 180 (413)
.++-.||+||+++|+.|+++.+..+...+ .++..++.||.....+......+.+|+|+||+.|.+++.++...+
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sL 324 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSL 324 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccH
Confidence 57789999999999999999998876544 467788889999988888888999999999999999999999999
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNV 260 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
+-++++.+|||+++.+.+|...+..++..+....|.+++|||++.....+.+.-+-+|+.+.+.+..+..-++.+....+
T Consensus 325 d~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyV 404 (610)
T KOG0341|consen 325 DACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYV 404 (610)
T ss_pred HHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHH
Confidence 98999999999999999999999999999999999999999999999999999999999998887765543333222222
Q ss_pred CccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc
Q 015093 261 DKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 340 (413)
.. +.++-.+++.+.+. ..++||||..+..++.+.++|--.|..++.+||+-++++|...++.|+.|+.+|||+|++++
T Consensus 405 kq-EaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS 482 (610)
T KOG0341|consen 405 KQ-EAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS 482 (610)
T ss_pred Hh-hhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh
Confidence 22 34444455555443 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcchhcc
Q 015093 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.|+|+|++.|||+++.|.....|.+|+||+||.|+.|.+.+|++.. +...+-++++.|+.-.+.+|..+..|
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHh
Confidence 9999999999999999999999999999999999999999999965 55678899999999999999888665
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=340.97 Aligned_cols=364 Identities=41% Similarity=0.688 Sum_probs=329.3
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..+|+.+.|.+++.+.+..++|..|..+|..+++.++.. ++.|.++..|+|||.++.+.++.+....-..+.++.++|
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaP 168 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAP 168 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCc
Confidence 589999999999999999999999999999999999885 789999999999999999999999888777889999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhhh
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~ 195 (413)
+++|+.|+.+.+.+.+...+++..+...+.....- ..-..+|+|+||+.+.+++.. +-+....+.++|+|||+.+.
T Consensus 169 trELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi 245 (477)
T KOG0332|consen 169 TRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMI 245 (477)
T ss_pred hHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhh
Confidence 99999999999999999888888777766522111 112358999999999999887 67788889999999999987
Q ss_pred c-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHH
Q 015093 196 S-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY 274 (413)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
+ .+++..-.++.+..|.+.|++++|||.......+......++..+....++.....+++++..+.....++..+..+.
T Consensus 246 ~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 246 DTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred hcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHH
Confidence 5 457777788889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc
Q 015093 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 275 ~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
....-+..+|||.+++.|.+++..+.+.|..+..+||++...+|..+++.|+.|..+|||+|+++++|+|++.++.||++
T Consensus 326 g~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNy 405 (477)
T KOG0332|consen 326 GLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNY 405 (477)
T ss_pred hhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEec
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------ChhHHHhhhcccCCCCCcceEEEEeccccH-HHHHHHHHHhccccccC
Q 015093 355 DLPT------QPENYLHRIGRSGRFGRKGVAINFVTRDDD-RMLADIQRFYNVVIEEL 405 (413)
Q Consensus 355 ~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 405 (413)
+.|. +...|+||+||+||.|+.|.++-++...+. +.+..++++.+.....+
T Consensus 406 dlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 406 DLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRL 463 (477)
T ss_pred CCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceec
Confidence 9884 678999999999999999999999987655 56678888886654443
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=353.01 Aligned_cols=357 Identities=29% Similarity=0.484 Sum_probs=298.0
Q ss_pred cCccCCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc------ccCceeEE
Q 015093 40 DSFDSMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------ESLQCQAL 112 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~------~~~~~~~l 112 (413)
..|..+|+++.+.+.|+. +++..|+.+|.++|+.++.|+|++|.++||||||++|++|+.+.+.. ...|.-+|
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 578899999999999975 89999999999999999999999999999999999999999988743 34567899
Q ss_pred EEcccHHHHHHHHHHHHHhhcccC-ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEcc
Q 015093 113 VLAPTRELAQQIEKVMRALGDYMG-VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDE 190 (413)
Q Consensus 113 vl~P~~~l~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE 190 (413)
|++||++|+.|.++.++++...+. +..+.+.||.....+...+..+++|+|+||+.|.+++.+ ..+.++.++.+|+||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 999999999999999999887653 345677788888888888888999999999999999987 456778899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCC-------------CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC-----------
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPG-------------KIQVGVFSATMPPEALEITRKFMNKPVRILVKRD----------- 246 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~-------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----------- 246 (413)
+|++.+.+|...+..+++.... ..+.+++|||+...+..+...-+.+|..+.....
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~ 375 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV 375 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence 9999999999888888777621 3567899999998888888888888776661110
Q ss_pred --------------ccccCCceEEEEEeCccccHHHHHHHH----HHhcCCCcEEEEEcCcccHHHHHHHHhhC------
Q 015093 247 --------------ELTLEGIKQFHVNVDKEEWKLDTLCDL----YETLAITQSVIFVNTRRKVDWLTDQMRSR------ 302 (413)
Q Consensus 247 --------------~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~lIf~~~~~~a~~l~~~l~~~------ 302 (413)
...++.+.+.+..++.. ..+-.|..+ .+.....+++||..+.+.++.-+..|.+.
T Consensus 376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e 454 (708)
T KOG0348|consen 376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLE 454 (708)
T ss_pred hhcCCcccccccccccCcHHhhhceEecCCc-hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccc
Confidence 11223344444444442 233333333 34446679999999999999988888642
Q ss_pred ----------------CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhh
Q 015093 303 ----------------DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366 (413)
Q Consensus 303 ----------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (413)
+.+...+||+|.+.+|..+++.|...+..||+||+++++|+|+|.+.+||.+++|.++.+|++|
T Consensus 455 ~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHR 534 (708)
T KOG0348|consen 455 GSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHR 534 (708)
T ss_pred cccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHHHHHH
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLADIQRF 397 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 397 (413)
+||+.|.|..|.+++|..+.+.++++-+..+
T Consensus 535 vGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 535 VGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred hhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999866655444
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=379.12 Aligned_cols=377 Identities=34% Similarity=0.561 Sum_probs=349.7
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-----ccCcee
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-----ESLQCQ 110 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-----~~~~~~ 110 (413)
..+..+|.+.|++..++..++++|+..|+++|..||+++.+|+++|.++.||||||++|++|++..... ...++.
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 456789999999999999999999999999999999999999999999999999999999999866532 234788
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCcc---EEE
Q 015093 111 ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIR---MFV 187 (413)
Q Consensus 111 ~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~---~iI 187 (413)
++|++||++|+.|+.++++.|...+++.+...+|+.........+..++.|+|+||+.+.+.+-.....+.+++ ++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999999999999999999999999999999999888888999999999999998877666666655 999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||++++.+.+|......++..+++..|.+++|||.+..+..+....+..|+.+.+........++.+..........+.
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 99999999999998888899999999999999999999999999999999999998888888888888888888778899
Q ss_pred HHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 268 DTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 268 ~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
..|..++... ..++++|||...+.|..+.+.|.+.|+.+..+||+-++.+|..+++.|+++.+.+|++|+.+++|+|++
T Consensus 601 ~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 601 LKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccc
Confidence 9999988765 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
.+..||+++.|....+|.+|.||+||+|++|.|++|+.+.+..+...+.++|...-+++|..+..|
T Consensus 681 ~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l 746 (997)
T KOG0334|consen 681 ELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQAL 746 (997)
T ss_pred cceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999776554
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=373.94 Aligned_cols=342 Identities=19% Similarity=0.249 Sum_probs=261.9
Q ss_pred cCcc--CCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 40 DSFD--SMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 40 ~~~~--~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.|. .+++...+...++. +|+..+++.|.+++++++.|+++++.+|||+|||++|.+|++.. .+.+|||+|
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISP 508 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 508 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeC
Confidence 3455 35666777666664 79999999999999999999999999999999999999999854 247999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh------cCCcEEEeChHHHHH--HHHcC---CCCCCCccE
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS------AGVHVVVGTPGRVFD--MLRRQ---SLRPDYIRM 185 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Iii~T~~~l~~--~~~~~---~~~~~~~~~ 185 (413)
+++|+.++...+... ++....+.++.........+. ...+|+++||+++.. .+... ......+++
T Consensus 509 LiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 999998766666553 788888888876555443332 467999999999852 11111 111234789
Q ss_pred EEEccchhhhccC--cHHHHHHH--HhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeC
Q 015093 186 FVLDEADEMLSRG--FKDQIYDI--FQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVD 261 (413)
Q Consensus 186 iIiDE~h~~~~~~--~~~~~~~~--~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (413)
|||||||.+..++ |...+..+ +....+..+++++|||+++.....+...++....... ...+..+++... ...
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~y~--Vv~ 661 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYS--VVP 661 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceEEE--Eec
Confidence 9999999998775 55444432 3333346789999999998777655544443222211 122333343322 222
Q ss_pred ccccHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc
Q 015093 262 KEEWKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340 (413)
Q Consensus 262 ~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 340 (413)
........+..++... ..+.+||||.+++.++.+++.|.+.|+.+..|||+|++.+|..+++.|.+|+.+|||||.+++
T Consensus 662 k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 662 KTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred cchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 2223345566666544 356899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
+|||+|++++||+++.|.|...|.|++||+||.|.+|.|++||...|......+
T Consensus 742 MGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred cCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776554444
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=365.14 Aligned_cols=323 Identities=20% Similarity=0.287 Sum_probs=250.8
Q ss_pred HhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 56 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
+.+|+..|+|+|.++++++++|+++++.+|||+|||++|++|++.. +..++|++|+++|+.|+.+.++.+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~---- 74 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS---- 74 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----
Confidence 4579999999999999999999999999999999999999998753 347999999999999999888764
Q ss_pred CceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHH-cCCC-CCCCccEEEEccchhhhccC--cHHHHH---
Q 015093 136 GVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLR-RQSL-RPDYIRMFVLDEADEMLSRG--FKDQIY--- 204 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~-~~~~-~~~~~~~iIiDE~h~~~~~~--~~~~~~--- 204 (413)
++....+.++........ ......+|+++||+.+..... ...+ ...++++||+||||.+..++ +...+.
T Consensus 75 gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 75 GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 667777777765443222 234467999999998753220 0111 34568999999999987654 333333
Q ss_pred HHHhhCCCCceEEEEeeeCChhHHHHHHHhcC--CCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH-hcCCCc
Q 015093 205 DIFQHLPGKIQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE-TLAITQ 281 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 281 (413)
.+...+ ++.+++++|||+++.........++ .+..+.. ....+++..... .........+..++. ...++.
T Consensus 155 ~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~--~~~~~~~~~l~~~l~~~~~~~~ 228 (470)
T TIGR00614 155 SLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVR--RKTPKILEDLLRFIRKEFKGKS 228 (470)
T ss_pred HHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEE--eCCccHHHHHHHHHHHhcCCCc
Confidence 334444 4678999999999876555444433 2322221 222333332222 222234556666665 445556
Q ss_pred EEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChh
Q 015093 282 SVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361 (413)
Q Consensus 282 ~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~ 361 (413)
+||||++++.++.+++.|++.++.+..+||++++.+|.++++.|.+|+.+|||||+++++|+|+|++++||+++.|.|..
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~ 308 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSME 308 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 362 NYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 362 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
.|.|++||+||.|.+|.|++++++.|...++.+
T Consensus 309 ~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 309 SYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred HHHhhhcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 999999999999999999999998877655554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=346.34 Aligned_cols=370 Identities=28% Similarity=0.412 Sum_probs=295.2
Q ss_pred ccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccc----
Q 015093 31 FFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYE---- 105 (413)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~---- 105 (413)
...+-......|.++.++..+..+|...||..|+++|..+++++..| .+++=.|.||||||++|-+|+++.+...
T Consensus 172 ~~~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s 251 (731)
T KOG0347|consen 172 IDDSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDS 251 (731)
T ss_pred cccccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchH
Confidence 33444445678999999999999999999999999999999999998 6899999999999999999999854221
Q ss_pred ---------cCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC
Q 015093 106 ---------SLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ 176 (413)
Q Consensus 106 ---------~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~ 176 (413)
...+-.||++||++|+.|..+-+..++...++++..++||.....+.+++...++|+|+||+.|..++...
T Consensus 252 ~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~ 331 (731)
T KOG0347|consen 252 QELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED 331 (731)
T ss_pred hhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh
Confidence 11223999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred CC---CCCCccEEEEccchhhhccCcHHHHHHHHhhCC-----CCceEEEEeeeCChhHH--------------------
Q 015093 177 SL---RPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-----GKIQVGVFSATMPPEAL-------------------- 228 (413)
Q Consensus 177 ~~---~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~lSAT~~~~~~-------------------- 228 (413)
.. .+..++++|+||++++...++...+..++..+. ...|.+.+|||..-...
T Consensus 332 n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~ki 411 (731)
T KOG0347|consen 332 NTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKI 411 (731)
T ss_pred hhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHH
Confidence 54 345578999999999999988877777776664 35689999999852111
Q ss_pred -HHHH--HhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCe
Q 015093 229 -EITR--KFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT 305 (413)
Q Consensus 229 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~ 305 (413)
.+.+ .+.+.|..+...+.......+......++.. .+--.+.-++.. ..|++|||||+++.+..++-.|+..+++
T Consensus 412 q~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~-eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 412 QHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPL-EKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred HHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCcc-ccceeEEEEEee-cCCceEEEechHHHHHHHHHHHhhcCCC
Confidence 0111 1122333333332222211111111111110 000001111111 3479999999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecc
Q 015093 306 VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 306 ~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
...+|+.|.+.+|-+.++.|++....|||||+++++|+|+|++.|||+|..|.+...|+||.||+.|++..|..+.++.+
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P 569 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGP 569 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcccc
Q 015093 386 DDDRMLADIQRFYNVVI 402 (413)
Q Consensus 386 ~~~~~~~~~~~~~~~~~ 402 (413)
.+...+..+..-|++..
T Consensus 570 ~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 570 QEVGPLKKLCKTLKKKE 586 (731)
T ss_pred HHhHHHHHHHHHHhhcc
Confidence 99888888888777643
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=362.26 Aligned_cols=330 Identities=20% Similarity=0.278 Sum_probs=255.3
Q ss_pred CCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 46 GLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 46 ~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
+.++...+.+++ +|+..|+++|.+++++++.|+++++.+|||+|||++|++|++.. ...++|++|+++|+.|+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHH
Confidence 344455556654 79999999999999999999999999999999999999988753 23799999999999999
Q ss_pred HHHHHHhhcccCceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC--
Q 015093 125 EKVMRALGDYMGVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-- 198 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-- 198 (413)
.+.++.. ++....+.++........ ......+++++||+.+........+....+++||+||||.+..++
T Consensus 82 v~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 82 VDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 9888875 566666666655443322 223457899999999874222222333458999999999987654
Q ss_pred cH---HHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcC--CCEEEEecCCccccCCceEEEEEeCccccHHHHHHHH
Q 015093 199 FK---DQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273 (413)
Q Consensus 199 ~~---~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
+. ..+..+...++ +.+++++|||+++.........+. .+.... .....+++..... ........+..+
T Consensus 158 fr~~y~~L~~l~~~~p-~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~---~~~~r~nl~~~v~---~~~~~~~~l~~~ 230 (607)
T PRK11057 158 FRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQI---SSFDRPNIRYTLV---EKFKPLDQLMRY 230 (607)
T ss_pred ccHHHHHHHHHHHhCC-CCcEEEEecCCChhHHHHHHHHhCCCCeEEEE---CCCCCCcceeeee---eccchHHHHHHH
Confidence 33 23444444554 678999999998766544333332 332222 1222233322211 123345667777
Q ss_pred HHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE
Q 015093 274 YETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 274 ~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
+....++++||||+++++++.+++.|++.++.+..+|+++++.+|.++++.|.+|+.+|||||+++++|+|+|++++||+
T Consensus 231 l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~ 310 (607)
T PRK11057 231 VQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH 310 (607)
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE
Confidence 77777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 354 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 354 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
++.|.|...|.|++||+||.|.+|.|++++++.|.....
T Consensus 311 ~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~ 349 (607)
T PRK11057 311 FDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (607)
T ss_pred eCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHH
Confidence 999999999999999999999999999999988755443
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=344.53 Aligned_cols=349 Identities=34% Similarity=0.576 Sum_probs=324.8
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
...|+.+-+..++...|+.++|..|+++|..||++++.+-+.||++..|+|||++|...+++.+........++|++||+
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTR 103 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTR 103 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecch
Confidence 47788889999999999999999999999999999999999999999999999999988888888887788999999999
Q ss_pred HHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-
Q 015093 119 ELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS- 196 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~- 196 (413)
+++.|..+.+..++..+ +.++.++.||+....+...++ .+.|+|+||+.+.++++...++.+.++++|+|||+.+.+
T Consensus 104 EiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t 182 (980)
T KOG4284|consen 104 EIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDT 182 (980)
T ss_pred hhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhch
Confidence 99999999999998765 889999999998777665554 478999999999999999999999999999999999987
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc-------ccHHHH
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE-------EWKLDT 269 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 269 (413)
..+...+..++..+|...|++++|||.+.++...+..++.+|..+........+-+++++++..... ..++..
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~ 262 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQK 262 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999888888888999998877653 347788
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
|.++++..+....||||+....|+-++.+|+..|+++-++.|.|++.+|..+++.++.-..+|||+|+.-++|||-+.++
T Consensus 263 L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vN 342 (980)
T KOG4284|consen 263 LTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVN 342 (980)
T ss_pred HHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccc
Confidence 88888998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
.||+.++|.+...|.|||||+||.|..|.+++|+.....
T Consensus 343 LVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 343 LVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred eEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999987655
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=329.38 Aligned_cols=364 Identities=32% Similarity=0.517 Sum_probs=335.9
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEccc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPT 117 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~ 117 (413)
...|+.++|+....+++.+.||..|+|+|++.++.++++++++-.+-||||||.++++|+++.+... +.+.+++++.||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 4789999999999999999999999999999999999999999999999999999999999988544 356799999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+.|..+..+.++...+++..++.|+.....+...+...+|||++||+.+.....+-.+.++.+.+||+||++.++..
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999888999999999999888777788999999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
+|...+.+++.+++...|.+++|||.+..+.++.+..+.+|..+....+....+..+..+..+.. ..+...|..++...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~-a~K~aaLl~il~~~ 258 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK-AEKEAALLSILGGR 258 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc-HHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999988877766666666666666655 56777777777665
Q ss_pred -CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 278 -AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 278 -~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
..+.++||+++..+++.+...|...|+.+..++|.+++..|..-+..|..++..++|.|+.+.+|+|+|-.+.||+++.
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccc
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
|.+...|.+|+||+.|+|+.|.+|.++.+.+..++-++.-+|...+.
T Consensus 339 p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred CCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 99999999999999999999999999999999999999999988543
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=370.02 Aligned_cols=347 Identities=22% Similarity=0.301 Sum_probs=261.8
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.|+++++++.+.+.+.+.|+.+|+|+|.++++. +.+|+++++++|||||||+++.++++..+.. +.+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 578889999999999999999999999999998 7889999999999999999999999988753 448999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|+.|.++.++++.. .+.++..++|+...... .....+|+|+||+++..++.+....+.+++++|+||+|.+.+..+
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999998753 48889999988754332 124579999999999988887655567899999999999887777
Q ss_pred HHHHHHHHhhC---CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEE--------------EEEeCc
Q 015093 200 KDQIYDIFQHL---PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF--------------HVNVDK 262 (413)
Q Consensus 200 ~~~~~~~~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 262 (413)
+..+..++.++ ....|++++|||+++ ..++..++....+. . ...+..+... ......
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~--~---~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVD--S---EWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCccc--C---CCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 76666554443 467899999999974 33444433222110 0 0000000000 000001
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC------------------------------------CCee
Q 015093 263 EEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR------------------------------------DHTV 306 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~------------------------------------~~~~ 306 (413)
.......+...+. .++++||||++++.|+.+++.|... ...+
T Consensus 229 ~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 229 KDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred chHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 1122223333332 4579999999999999988888642 1368
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC-----CCCChhHHHhhhcccCCCCCc-
Q 015093 307 SATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-----LPTQPENYLHRIGRSGRFGRK- 376 (413)
Q Consensus 307 ~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~- 376 (413)
..+|+++++.+|..+++.|++|.++|||||+++++|+|+|..++||. ++ .|.+..+|.||+||+||.|.+
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 89999999999999999999999999999999999999999999886 43 578999999999999999865
Q ss_pred -ceEEEEeccccHHHHHHHHHHhccccc
Q 015093 377 -GVAINFVTRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 377 -g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
|.+++++...+. ...-+.+|+.....
T Consensus 387 ~G~~ii~~~~~~~-~~~~~~~~l~~~~~ 413 (737)
T PRK02362 387 YGEAVLLAKSYDE-LDELFERYIWADPE 413 (737)
T ss_pred CceEEEEecCchh-HHHHHHHHHhCCCC
Confidence 899998865432 22223455543333
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=358.71 Aligned_cols=321 Identities=22% Similarity=0.324 Sum_probs=254.3
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.+|+..++++|.+++++++.|+++++++|||+|||++|++|++.. ...++|++|+++|+.|+.+.++.+ +
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~----g 77 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA----G 77 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc----C
Confidence 489999999999999999999999999999999999999888743 237899999999999999988875 6
Q ss_pred ceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC--cHHH---HHHHH
Q 015093 137 VKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG--FKDQ---IYDIF 207 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~---~~~~~ 207 (413)
+.+..+.++........ ......+|+++||+.+.............+++||+||||.+..++ +... +..+.
T Consensus 78 i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 78 VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 77778887766544332 234567999999999865333333344568999999999987654 4333 33445
Q ss_pred hhCCCCceEEEEeeeCChhHHHHHHHhcCCC-EEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEE
Q 015093 208 QHLPGKIQVGVFSATMPPEALEITRKFMNKP-VRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFV 286 (413)
Q Consensus 208 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~ 286 (413)
..++. .+++++|||+++.....+...++.. ..... .....+++..... ....+...+..++....++++||||
T Consensus 158 ~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~---~~~~~~~~l~~~l~~~~~~~~IIf~ 231 (591)
T TIGR01389 158 ERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI--TSFDRPNLRFSVV---KKNNKQKFLLDYLKKHRGQSGIIYA 231 (591)
T ss_pred HhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cCCCCCCcEEEEE---eCCCHHHHHHHHHHhcCCCCEEEEE
Confidence 55554 4599999999887766555554322 11111 1222333332222 2234566777778777778999999
Q ss_pred cCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhh
Q 015093 287 NTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366 (413)
Q Consensus 287 ~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (413)
++++.++.+++.|...++.+..+|++++..+|..+++.|.+|+.+|||||+++++|+|+|+++.||+++.|.|...|.|+
T Consensus 232 ~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~ 311 (591)
T TIGR01389 232 SSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQE 311 (591)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHH
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLAD 393 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~ 393 (413)
+||+||.|.++.|+++++..|......
T Consensus 312 ~GRaGR~G~~~~~il~~~~~d~~~~~~ 338 (591)
T TIGR01389 312 AGRAGRDGLPAEAILLYSPADIALLKR 338 (591)
T ss_pred hccccCCCCCceEEEecCHHHHHHHHH
Confidence 999999999999999998877554443
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=325.57 Aligned_cols=361 Identities=27% Similarity=0.426 Sum_probs=289.5
Q ss_pred ccCccCCCCCHHHHHH----------HHhCCCCCCcHHHHhhhhhhhC---------CCcEEEeCCCCCchhHHHHHHHH
Q 015093 39 YDSFDSMGLKENLLRG----------IYAYGFEKPSAIQQRGIVPFCK---------GLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~----------l~~~~~~~~~~~Q~~~~~~~~~---------~~~~lv~~~tGsGKT~~~~~~i~ 99 (413)
...|+.++.++..... +.++++..+.|+|..+++.++. ++|+.|.+|||||||++|.+||.
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3566677777665544 8899999999999999988743 57899999999999999999999
Q ss_pred Hhccccc-CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc-CC----cEEEeChHHHHHHH
Q 015093 100 QQLDYES-LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA-GV----HVVVGTPGRVFDML 173 (413)
Q Consensus 100 ~~l~~~~-~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~Iii~T~~~l~~~~ 173 (413)
+.+.... ..-+++|++|++.|+.|.++.+.++....++.|..+.|......+...+.. .. +|+|+||++|.+++
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 9987663 346899999999999999999999999999999999998887776655543 33 89999999999999
Q ss_pred H-cCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC----------------------------------CceEEE
Q 015093 174 R-RQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG----------------------------------KIQVGV 218 (413)
Q Consensus 174 ~-~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~i~ 218 (413)
. ..++.+.+++++|+|||+++.+..|...+..+...+.. ....+.
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 8 57889999999999999999887666544444333211 122556
Q ss_pred EeeeCChhHHHHHHHhcCCCEEEEec----CCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHH
Q 015093 219 FSATMPPEALEITRKFMNKPVRILVK----RDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDW 294 (413)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~ 294 (413)
+|||+...-..+...-++.|-..... .....++.+.+....... ..+.-.+..++......++|+|+++...+..
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~-~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP-KFKPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc-ccchHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 77777655555555555555332222 122233444444443333 4566778888888888999999999999999
Q ss_pred HHHHHh----hCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhccc
Q 015093 295 LTDQMR----SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370 (413)
Q Consensus 295 l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~ 370 (413)
++..|+ ..+.++..+.|.++...|.+.++.|..|.+++|||++++++|+|+.+++.||++++|.+...|+||+||+
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 999887 3356677799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEeccccHHHHHHHHHHhcc
Q 015093 371 GRFGRKGVAINFVTRDDDRMLADIQRFYNV 400 (413)
Q Consensus 371 ~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
+|+|+.|.|+.+.+..+...+..+-+....
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999888777666554443
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=367.12 Aligned_cols=335 Identities=21% Similarity=0.300 Sum_probs=247.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc------cCceeEEEEcccHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE------SLQCQALVLAPTREL 120 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~------~~~~~~lvl~P~~~l 120 (413)
+++.+.+.+.+ ++..|+++|.++++.+.+|+++++++|||||||+++++++++.+... ..+.+++|++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67778787766 68899999999999999999999999999999999999999877532 234579999999999
Q ss_pred HHHHHHHHHH-------hh----ccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEE
Q 015093 121 AQQIEKVMRA-------LG----DYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMF 186 (413)
Q Consensus 121 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~i 186 (413)
++|+++.+.. +. ... ++++...+|+.......+.....++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876553 22 222 6788899999887777777777889999999999877755433 35678999
Q ss_pred EEccchhhhccCcHHHH----HHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCC-------CEEEEecCCccccCCceE
Q 015093 187 VLDEADEMLSRGFKDQI----YDIFQHLPGKIQVGVFSATMPPEALEITRKFMNK-------PVRILVKRDELTLEGIKQ 255 (413)
Q Consensus 187 IiDE~h~~~~~~~~~~~----~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 255 (413)
|+||+|.+.+..++..+ ..+....+...+++++|||+++. ......+.+. +..+. .........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEEE
Confidence 99999998866555433 33333444578999999999752 3333333221 11111 111101001110
Q ss_pred EEEE----eCcccc----HHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC------CCeeEeecCCCCHHHHHHH
Q 015093 256 FHVN----VDKEEW----KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR------DHTVSATHGDMDQNSRDII 321 (413)
Q Consensus 256 ~~~~----~~~~~~----~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~ 321 (413)
.... ...... ....+..+++ ..+++||||++++.|+.++..|++. +..+..+||++++.+|..+
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 0000 000111 1222333333 3468999999999999999999873 4679999999999999999
Q ss_pred HHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC-CCcceEEEEeccc
Q 015093 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRD 386 (413)
Q Consensus 322 ~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~ 386 (413)
++.|++|+.++||||+++++|+|+|++++||+++.|.|...|+||+||+||. |..+.++++....
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999987 4445555555443
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=332.69 Aligned_cols=364 Identities=32% Similarity=0.459 Sum_probs=317.9
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-----cCceeEEEEcccHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-----SLQCQALVLAPTREL 120 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~~lvl~P~~~l 120 (413)
..++.++..+...+|..|++.|..+++.++.+++++.++|||||||++|++|++..+... ..+.+++|+.|+++|
T Consensus 142 ~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreL 221 (593)
T KOG0344|consen 142 SMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTREL 221 (593)
T ss_pred hhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHH
Confidence 457888999999999999999999999999999999999999999999999999888543 346789999999999
Q ss_pred HHHHHHHHHHhh--cccCceEEEEECCcchHHHH-HHHhcCCcEEEeChHHHHHHHHcCC--CCCCCccEEEEccchhhh
Q 015093 121 AQQIEKVMRALG--DYMGVKVHACVGGTSVREDQ-RILSAGVHVVVGTPGRVFDMLRRQS--LRPDYIRMFVLDEADEML 195 (413)
Q Consensus 121 ~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~T~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~ 195 (413)
+.|.++++.++. ...+................ ......++|+++||..+...+.... ..+..+..+|+||++.+.
T Consensus 222 a~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 222 AAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 999999999998 65665555554432221111 1112357899999999998887765 678889999999999998
Q ss_pred cc-CcHHHHHHHHhhCCC-CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHH
Q 015093 196 SR-GFKDQIYDIFQHLPG-KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273 (413)
Q Consensus 196 ~~-~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
+. .+..++..++..+.. ...+-++|||.+...+++++........+.+...+.....+.+....+.....+.-.+.++
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~ 381 (593)
T KOG0344|consen 302 EPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQL 381 (593)
T ss_pred ChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHH
Confidence 88 788888888877754 5677889999999999999999999999888888777777888878888888899999999
Q ss_pred HHhcCCCcEEEEEcCcccHHHHHHHH-hhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE
Q 015093 274 YETLAITQSVIFVNTRRKVDWLTDQM-RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 274 ~~~~~~~~~lIf~~~~~~a~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
+...-..+++||+.+.+.|.+++..| .-.++++.++||..++.+|++.++.|+.|++.+||||+.+++|+|+.+++.||
T Consensus 382 v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 382 VASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred HhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 99998889999999999999999999 56688999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcch
Q 015093 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANV 409 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
++|.|.+..+|++|+||+||+|+.|.+++||+..+...++.+.+.....=-++|++.
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~ 518 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKI 518 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHH
Confidence 999999999999999999999999999999999999999999888777666666554
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=348.70 Aligned_cols=359 Identities=21% Similarity=0.270 Sum_probs=282.5
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-----cCceeEEEEcccHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-----SLQCQALVLAPTRELA 121 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~~lvl~P~~~l~ 121 (413)
+++.+.+.++.. |.+|++.|..|++.+.+|+++||.+|||||||+++++|++..+... ..+-.+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 689999999988 9999999999999999999999999999999999999999988766 2346799999999999
Q ss_pred HHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEEEEccchhhhccCc
Q 015093 122 QQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 122 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIiDE~h~~~~~~~ 199 (413)
+++.+.+..++...|+.+.+-+|++......+...+.++|+++||++|.-++....+ .+.++++||+||+|.+.....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999999888888889999999999999877755432 367799999999999886655
Q ss_pred HHHH----HHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCC--EEEEecCCccccCCceEEEEEeC------ccccHH
Q 015093 200 KDQI----YDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKP--VRILVKRDELTLEGIKQFHVNVD------KEEWKL 267 (413)
Q Consensus 200 ~~~~----~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 267 (413)
+.++ .++....+ +.|.|++|||..+. ....+.+.+.. ..+..... .....+.......+ ......
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~-~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSA-AKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEccc-CCcceEEEEecCCccccccchhHHHH
Confidence 5333 33333344 88999999999743 34455555543 33332222 22222222222111 112345
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC-CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD-HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
..+.++++++. .+|||+|++..|+.++..|++.+ ..+..+||.++...|..+++.|++|+++.+|||+.++.|||+.
T Consensus 244 ~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 55666666665 89999999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHhhhcccCCC-CCcceEEEEeccccHHHHHH---HHHHhcc--ccccCCcchhcc
Q 015093 347 QVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRDDDRMLAD---IQRFYNV--VIEELPANVADL 412 (413)
Q Consensus 347 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~ 412 (413)
+++.||+++.|.+++.+.||+||+|+. |...+++++.... .+.+.. ....+.- +....|.+.+|.
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDV 392 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDV 392 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhH
Confidence 999999999999999999999999885 4557777776663 233322 2333332 334556666654
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=359.11 Aligned_cols=333 Identities=20% Similarity=0.268 Sum_probs=257.9
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.|+.+++++.+.+.+++.|+..|+++|.++++. +.+|+++++++|||||||+++.++++..+... +.+++|++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 467789999999999999999999999999986 78899999999999999999999998876543 358999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|+.|+++.++.+. ..+.++..++|+...... ....++|+|+||+++..++......++++++||+||+|.+.+..+
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998764 468899999988764322 224579999999999988876665678899999999999988888
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEE-----EEeCc-c-----ccHHH
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH-----VNVDK-E-----EWKLD 268 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~-----~~~~~ 268 (413)
...+..++..+....|++++|||+++ ..++..++ +.... .. ...+..+.... ..... . .....
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl-~~~~~-~~---~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGN-AEELAEWL-NAELV-VS---DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHh-CCccc-cC---CCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 88899999998889999999999975 34555433 32211 11 11111111000 00010 0 11112
Q ss_pred HHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC---------------------------------CCeeEeecCCCCH
Q 015093 269 TLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR---------------------------------DHTVSATHGDMDQ 315 (413)
Q Consensus 269 ~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~---------------------------------~~~~~~~~~~~~~ 315 (413)
.+.+.++ .++++||||++++.|+.++..|.+. ...+..+|+++++
T Consensus 230 ~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 230 LVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 2333333 3568999999999998877666321 2358899999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE-------cCC-CCChhHHHhhhcccCCCC--CcceEEEEecc
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------YDL-PTQPENYLHRIGRSGRFG--RKGVAINFVTR 385 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------~~~-~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~ 385 (413)
.+|..+++.|++|.++|||||+++++|+|+|..++||. ++. +.+..+|.||+||+||.| ..|.+++++..
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999998884 222 335679999999999975 56999999876
Q ss_pred cc
Q 015093 386 DD 387 (413)
Q Consensus 386 ~~ 387 (413)
.+
T Consensus 388 ~~ 389 (720)
T PRK00254 388 EE 389 (720)
T ss_pred cc
Confidence 54
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=350.59 Aligned_cols=344 Identities=18% Similarity=0.247 Sum_probs=255.1
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
.|+++++++.+.+.+...++. |+++|.++++.+.+++++++++|||||||+++.++++..+..+ .++++++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 467889999999999999986 9999999999999999999999999999999999998877543 489999999999
Q ss_pred HHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH
Q 015093 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200 (413)
Q Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 200 (413)
+.|.+++++++. ..+..+...+|+...... ....++|+|+||+++...+..+...+.++++||+||+|.+.+..++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998864 457888888887653222 1235799999999999888877666788999999999998777666
Q ss_pred HHHHHHHh---hCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEE-----EeCccccHHHHHHH
Q 015093 201 DQIYDIFQ---HLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHV-----NVDKEEWKLDTLCD 272 (413)
Q Consensus 201 ~~~~~~~~---~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 272 (413)
..+..++. ..+.+.+++++|||+++ ..++..++...... ....+..+..... ..+........+..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~-----~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIK-----SNFRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccC-----CCCCCCCeEEEEEecCeeeecccccccccHHH
Confidence 66655544 34567899999999974 34444433222111 1111111111000 01111111111233
Q ss_pred HHHh--cCCCcEEEEEcCcccHHHHHHHHhhC-------------------------CCeeEeecCCCCHHHHHHHHHHH
Q 015093 273 LYET--LAITQSVIFVNTRRKVDWLTDQMRSR-------------------------DHTVSATHGDMDQNSRDIIMREF 325 (413)
Q Consensus 273 ~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
++.. ..++++||||++++.++.+++.|.+. ...+..+|+++++.+|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 3332 24579999999999999999888653 12478899999999999999999
Q ss_pred hcCCCeEEEEeCccccCCCCCCCCEEEEcC---------CCCChhHHHhhhcccCCCCC--cceEEEEeccccHHHHHHH
Q 015093 326 RSGSSRVLITTDLLARGIDVQQVSLVINYD---------LPTQPENYLHRIGRSGRFGR--KGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 326 ~~~~~~vli~t~~~~~G~d~~~~~~vi~~~---------~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~~ 394 (413)
++|..+|||||+++++|+|+|...+|| .+ .|.|..+|.||+||+||.|. .|.+++++...+ ....+
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~--~~~~~ 384 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA--SYDAA 384 (674)
T ss_pred HcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc--cHHHH
Confidence 999999999999999999999865554 33 24688899999999999984 577888866543 22345
Q ss_pred HHHhccc
Q 015093 395 QRFYNVV 401 (413)
Q Consensus 395 ~~~~~~~ 401 (413)
.+++...
T Consensus 385 ~~~l~~~ 391 (674)
T PRK01172 385 KKYLSGE 391 (674)
T ss_pred HHHHcCC
Confidence 6666443
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=341.48 Aligned_cols=321 Identities=20% Similarity=0.242 Sum_probs=245.7
Q ss_pred CCHHHH-HHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 47 LKENLL-RGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 47 l~~~~~-~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+.... .....++| +|++.|.++++.+..+ .+.++++|||||||.+++.+++..+..+ .+++|++||++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHH
Confidence 344444 44455788 5999999999999874 6899999999999999999988876543 58999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
|+.|+++.++++....++++..++++.......... ...++|+|+||..+ .....+.+++++|+||+|++.
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfg 586 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFG 586 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccc
Confidence 999999999998888888888888876644333222 34689999999533 344567789999999999863
Q ss_pred ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH
Q 015093 196 SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE 275 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
. .....+..++.+.++++|||||.+...........++..+...... ...+......... ......+...+
T Consensus 587 v-----~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~-~~i~~~i~~el- 657 (926)
T TIGR00580 587 V-----KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP-ELVREAIRREL- 657 (926)
T ss_pred h-----hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH-HHHHHHHHHHH-
Confidence 2 2334556667788999999999876655544444444433332221 1223333322211 11111222222
Q ss_pred hcCCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE
Q 015093 276 TLAITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 276 ~~~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
..+++++|||++++.++.+++.|++. +.++..+||+|++.+|+++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 658 -~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 658 -LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred -HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE
Confidence 24578999999999999999999984 788999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 354 YDLP-TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 354 ~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.+.+ .+..+|.|++||+||.|+.|.|++++.+.
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 8875 46779999999999999999999998654
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=302.80 Aligned_cols=322 Identities=21% Similarity=0.249 Sum_probs=245.0
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.++|.||.......+.+ +.||+.|||-|||+++.+.+...+...+ + ++|++.||+.|+.|.++.+.++.......+.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 48999999999887766 8999999999999999988888776655 3 8999999999999999999999877677888
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++|..........+.. ..|+++||+.+.+.+..+.++...+.++|+||||+.........+-+.+.....++.+++||
T Consensus 91 ~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLT 169 (542)
T COG1111 91 ALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLT 169 (542)
T ss_pred eecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEe
Confidence 99998887766666554 58999999999999999999999999999999999765443444444444555678899999
Q ss_pred eeCChhHHHHHHHhc---CCCEEEEecCCccccC---CceEEEEE-----------------------------------
Q 015093 221 ATMPPEALEITRKFM---NKPVRILVKRDELTLE---GIKQFHVN----------------------------------- 259 (413)
Q Consensus 221 AT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~----------------------------------- 259 (413)
|||..+...+..-+- -..+.+......-..+ .....+..
T Consensus 170 ASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 170 ASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred cCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 999754433211111 0111111000000000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 015093 260 -------------------------------------------------------------------------------- 259 (413)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (413)
T Consensus 250 ~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~ 329 (542)
T COG1111 250 PVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPY 329 (542)
T ss_pred cccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChh
Confidence
Q ss_pred -------------eCccccHHHHHHHHHH----hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeE--ee-------cCCC
Q 015093 260 -------------VDKEEWKLDTLCDLYE----TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVS--AT-------HGDM 313 (413)
Q Consensus 260 -------------~~~~~~~~~~l~~~~~----~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~--~~-------~~~~ 313 (413)
......|+..+..+++ +....+++||++.+++|+.+.+.|.+.+..+. ++ ..||
T Consensus 330 ~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GM 409 (542)
T COG1111 330 FKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGM 409 (542)
T ss_pred hHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccccccc
Confidence 0000113333344333 33556899999999999999999999887763 22 2479
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 314 DQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
++.++.++++.|++|.++|||||++.++|+|+|.++.||++++..|+..++||.||+||. ++|.+++++++++
T Consensus 410 sQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 410 SQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred CHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 999999999999999999999999999999999999999999999999999999999996 8899999999883
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=333.85 Aligned_cols=320 Identities=18% Similarity=0.247 Sum_probs=238.2
Q ss_pred HHHHHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
..+......++| +|++.|.++++.+..+ .+.++++|||||||.+++++++..+.. +.+++|++||++|+.
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~ 324 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAE 324 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHH
Confidence 344555566777 7999999999999886 369999999999999999999887654 458999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
|+++.+++++...++++..++|+......... ....++|+|+|+..+.. ...+.+++++|+||+|++....
T Consensus 325 Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~q 399 (681)
T PRK10917 325 QHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVEQ 399 (681)
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHHH
Confidence 99999999998889999999999875544332 23468999999987642 3346678999999999874322
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcC
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
...+......+++++|||||.+....... ++................+................+...+ ..
T Consensus 400 -----r~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~ 470 (681)
T PRK10917 400 -----RLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI--AK 470 (681)
T ss_pred -----HHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH--Hc
Confidence 22233344467899999999765543332 2322211111111112223333322221111122222222 24
Q ss_pred CCcEEEEEcCcc--------cHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 279 ITQSVIFVNTRR--------KVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 279 ~~~~lIf~~~~~--------~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
+++++|||+.++ .++.+++.|.+. +.++..+||+|++.+|+++++.|++|+.+|||||+++++|+|+|++
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v 550 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNA 550 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCC
Confidence 568999999654 456677777765 4689999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC-ChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 349 SLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 349 ~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
++||+++.|. +...+.|+.||+||.|..|.|++++...
T Consensus 551 ~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 551 TVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred cEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 9999999875 5788999999999999999999999643
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=342.61 Aligned_cols=320 Identities=18% Similarity=0.222 Sum_probs=249.7
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
+++..+....++| .|++.|.++++.+..+ .+.+++++||+|||.+++.+++..+.. +.+++|++||++|+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA 662 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHH
Confidence 4556677788888 7999999999999886 789999999999999988777665432 45899999999999
Q ss_pred HHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh----cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 122 QQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS----AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 122 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
.|+++.++++....++++..++++.....+...+. ..++|+|+||+.+. ....+.+++++|+||+|++...
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~~ 737 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGVR 737 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcchh
Confidence 99999999877777888888888777655554432 46899999997442 3345567899999999997321
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
....+..++.+.+++++||||.+....+....+.++..+...... ...+..+.........+...+..+ .
T Consensus 738 -----~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el---~ 807 (1147)
T PRK10689 738 -----HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREI---L 807 (1147)
T ss_pred -----HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHH---h
Confidence 234456677789999999999887777766666666655433222 123333333322211111222222 2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
.+++++|||++++.++.+++.|++. +..+..+||+|++.+|++++..|++|+.+|||||+++++|+|+|++++||+..
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec
Confidence 4578999999999999999999987 67899999999999999999999999999999999999999999999999655
Q ss_pred CC-CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 356 LP-TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 356 ~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.. .+..+|.|++||+||.|+.|.|++++.+.
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 43 56788999999999999999999998653
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=328.18 Aligned_cols=318 Identities=21% Similarity=0.283 Sum_probs=235.9
Q ss_pred HHHHHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
..+.+.+...+| +|++.|.++++.+..+ .+.++++|||||||.+++++++..+.. +.+++|++||++|+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHH
Confidence 445667778888 7999999999999875 258999999999999999998887654 458999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
|+++.+++++...++++..++|+......... ....++|+|+|+..+.. ...+.+++++|+||+|++....
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH
Confidence 99999999998889999999998876543322 23467999999987643 3456778999999999864332
Q ss_pred cHHHHHHHHhhCC--CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH-
Q 015093 199 FKDQIYDIFQHLP--GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE- 275 (413)
Q Consensus 199 ~~~~~~~~~~~~~--~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 275 (413)
.. .+..... ..+++++|||||.+...... .++................+....... ... ..+...+.
T Consensus 374 r~----~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~~~---~~~-~~~~~~i~~ 443 (630)
T TIGR00643 374 RK----KLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLIKH---DEK-DIVYEFIEE 443 (630)
T ss_pred HH----HHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEeCc---chH-HHHHHHHHH
Confidence 11 2222222 25789999999976543332 222211111111111112222222211 112 33333332
Q ss_pred h-cCCCcEEEEEcCcc--------cHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 276 T-LAITQSVIFVNTRR--------KVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 276 ~-~~~~~~lIf~~~~~--------~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
. ..+++++|||+..+ .++.+++.|.+. +..+..+||++++.+|.++++.|++|+.+|||||+++++|+|
T Consensus 444 ~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvD 523 (630)
T TIGR00643 444 EIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVD 523 (630)
T ss_pred HHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcc
Confidence 2 24568999999764 456777777653 678999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCC-ChhHHHhhhcccCCCCCcceEEEEecc
Q 015093 345 VQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 345 ~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
+|++++||+++.+. +...+.|++||+||.|++|.|++++..
T Consensus 524 iP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 524 VPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred cCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 99999999998875 678899999999999999999999943
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=321.37 Aligned_cols=316 Identities=19% Similarity=0.226 Sum_probs=234.8
Q ss_pred CCCCCCcHHHHhhhhhhhCCC-cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc-
Q 015093 58 YGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM- 135 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~- 135 (413)
.||. |+|+|.++++.++.|+ ++++.+|||||||.++.++++..........++++++|+++|+.|.++.+.+++..+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 4776 9999999999999998 478889999999986654444322222222245557899999999999999888654
Q ss_pred ----------------------CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC---------CC---CCC
Q 015093 136 ----------------------GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ---------SL---RPD 181 (413)
Q Consensus 136 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~---------~~---~~~ 181 (413)
++++..++||.....+.......++|+|+|++.+.+-.... .+ .+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 47889999999888888777788999999976554322110 01 156
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhC--CC---CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEE
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHL--PG---KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF 256 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~--~~---~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (413)
+++++|+|||| .+.+|...+..+++.. +. ..|+++||||++.........+..++..............+.++
T Consensus 171 ~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~ 248 (844)
T TIGR02621 171 QDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL 248 (844)
T ss_pred cceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE
Confidence 68999999999 5678999999999864 33 26899999999887777777777666655544444444444443
Q ss_pred EEEeCccccHHHHHHHHH---HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHH-----HHHHHHhc-
Q 015093 257 HVNVDKEEWKLDTLCDLY---ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD-----IIMREFRS- 327 (413)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~---~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~- 327 (413)
+ ..+. ..+...+...+ .....+++||||++++.|+.+++.|++.++ ..+||++++.+|. ++++.|++
T Consensus 249 v-~v~~-e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~ 324 (844)
T TIGR02621 249 V-PPSD-EKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQ 324 (844)
T ss_pred E-ecCh-HHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcc
Confidence 2 2222 22332222221 123457899999999999999999998876 8999999999999 77889987
Q ss_pred ---CC-------CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceE-EEEe
Q 015093 328 ---GS-------SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA-INFV 383 (413)
Q Consensus 328 ---~~-------~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~-~~~~ 383 (413)
++ ..|||||+++++|+|++. ++||+...| ...|+||+||++|.|+.|.+ +.++
T Consensus 325 ~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 325 MLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred ccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 44 679999999999999986 777775554 68999999999999885433 4444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=312.95 Aligned_cols=328 Identities=23% Similarity=0.308 Sum_probs=256.3
Q ss_pred HHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 53 RGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 53 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..|+. +|+...++-|.++++++++++++++.+|||+|||+||.+|++-. .+.+|||.|..+|...+.+.+++.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHHc
Confidence 34443 78999999999999999999999999999999999999998754 238999999999999999988886
Q ss_pred hcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC--cHH---H
Q 015093 132 GDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG--FKD---Q 202 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~---~ 202 (413)
|+.+..+.+..+..+...+. ....++++-+|+.|..-.....+....+.+++|||||.+..|+ |.. .
T Consensus 81 ----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 81 ----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred ----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 66777777765555544333 3357899999999864332222224457899999999998875 554 4
Q ss_pred HHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCE-EEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCc
Q 015093 203 IYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPV-RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQ 281 (413)
Q Consensus 203 ~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (413)
+..+...++ +++++++|||.++.....+...+.-.. .... ..+..+++............+...+.. ......+.
T Consensus 157 lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~--~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~ 232 (590)
T COG0514 157 LGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR--GSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKS 232 (590)
T ss_pred HHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE--ecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCC
Confidence 445566666 788999999998877665555444322 2222 223344444333333322223332222 22445567
Q ss_pred EEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChh
Q 015093 282 SVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 361 (413)
Q Consensus 282 ~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~ 361 (413)
.+|||.|++.++.+++.|...|+.+..||++++..+|+.+.+.|..++.+|+|||.++++|||-|+++.|||++.|.|..
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 362 NYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 362 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
.|.|-+||+||.|.+..|++++.+.|......+
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred HHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 999999999999999999999999886544433
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=335.96 Aligned_cols=328 Identities=21% Similarity=0.282 Sum_probs=234.6
Q ss_pred EeCCCCCchhHHHHHHHHHhcccc----------cCceeEEEEcccHHHHHHHHHHHHHhh------------cccCceE
Q 015093 82 QQAQSGTGKTATFCSGILQQLDYE----------SLQCQALVLAPTRELAQQIEKVMRALG------------DYMGVKV 139 (413)
Q Consensus 82 v~~~tGsGKT~~~~~~i~~~l~~~----------~~~~~~lvl~P~~~l~~q~~~~~~~~~------------~~~~~~~ 139 (413)
|++|||||||++|.+++++.+... ..+.++|||+|+++|++|..+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999998887542 134689999999999999999886421 1247889
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEccchhhhccCcH----HHHHHHHhhCCCCc
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDEADEMLSRGFK----DQIYDIFQHLPGKI 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~----~~~~~~~~~~~~~~ 214 (413)
...+|++......+.....++|+|+||++|..++.++. ..++++++||+||+|.+.+..++ ..+.++....+.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888777777788999999999998776432 35788999999999998765433 34555656666788
Q ss_pred eEEEEeeeCChhHHHHHHHhcCC-CEEEEecCCccccCCceEEEEEeCcc-------------------ccHHHHH-HHH
Q 015093 215 QVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNVDKE-------------------EWKLDTL-CDL 273 (413)
Q Consensus 215 ~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l-~~~ 273 (413)
|+|++|||..+ ..+..+.+.+. +..+.. ........+... ...... ......+ ..+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999986 34555544433 444432 222222222221 111110 0000111 122
Q ss_pred HHh-cCCCcEEEEEcCcccHHHHHHHHhhCC---------------------------------CeeEeecCCCCHHHHH
Q 015093 274 YET-LAITQSVIFVNTRRKVDWLTDQMRSRD---------------------------------HTVSATHGDMDQNSRD 319 (413)
Q Consensus 274 ~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~ 319 (413)
+.. ...+++||||||+..|+.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 245689999999999999999997631 1256899999999999
Q ss_pred HHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC-CCcceEEEEeccccH--HHHHHHHH
Q 015093 320 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRDDD--RMLADIQR 396 (413)
Q Consensus 320 ~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~~~--~~~~~~~~ 396 (413)
.+++.|++|++++||||+.++.|||++.+++||+++.|.|..+|+||+||+||. |..+.++++..+... +....+..
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~~ve~ 397 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC 397 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 334555544433221 11223556
Q ss_pred Hhcccccc--CCcchhcc
Q 015093 397 FYNVVIEE--LPANVADL 412 (413)
Q Consensus 397 ~~~~~~~~--~~~~~~~~ 412 (413)
+++...++ .|.+.+|+
T Consensus 398 ~l~g~iE~~~~p~nplDV 415 (1490)
T PRK09751 398 MFAGRLENLTPPHNPLDV 415 (1490)
T ss_pred HhcCCCCccCCCCChHHH
Confidence 66665554 44444443
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=312.27 Aligned_cols=300 Identities=15% Similarity=0.142 Sum_probs=216.6
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
..|+++|.++++.++.+++.++++|||+|||.++...+...+ ... ..++||++|+++|+.||.+.++++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~-~~~-~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYL-ENY-EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH-hcC-CCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 489999999999999999999999999999997754332222 222 338999999999999999999998654344444
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.+.+|.... .+.+|+|+|++++.+.... .+..+++||+||||++.+.. +..++..+++..+++++|
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchhh---hccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEe
Confidence 455554321 3468999999998754322 34678999999999986543 456666776677899999
Q ss_pred eeCChhHHHH--HHHhcCCCEEEEecCCcc------ccCCceEEEEE--------------------eCccccHHHHHHH
Q 015093 221 ATMPPEALEI--TRKFMNKPVRILVKRDEL------TLEGIKQFHVN--------------------VDKEEWKLDTLCD 272 (413)
Q Consensus 221 AT~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------------~~~~~~~~~~l~~ 272 (413)
|||....... ...++++.... ....+. ....+...... ......+...+..
T Consensus 257 ATp~~~~~~~~~~~~~fG~i~~~-v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGDIFKP-VTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCCceEE-ecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 9996432211 12233322211 111000 00000000000 0001112233333
Q ss_pred HHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe-CccccCCCCCCCC
Q 015093 273 LYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT-DLLARGIDVQQVS 349 (413)
Q Consensus 273 ~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~~ 349 (413)
++... .+.+++||+.++++++.+++.|++.+.++..+||+++..+|..+++.|++|+..+||+| +++++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 33322 45689999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKG 377 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 377 (413)
+||++.++.|...|+|++||++|.+..+
T Consensus 416 ~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 416 HVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999986543
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=291.99 Aligned_cols=340 Identities=20% Similarity=0.233 Sum_probs=269.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
..+.+.+++++.+...++..|+.+|.|+|..++++ +++|+|.+|+++|+||||++.-++-+..+... +.+.++++|.
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~KmlfLvPL 270 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVPL 270 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeEEEEehh
Confidence 36788899999999999999999999999999988 88999999999999999999987777665543 3489999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
.+|++|.+++|++....+++.+..-.|...+..... ....++||||+||+.+...++.. -.+.+++.||+||+|.
T Consensus 271 VALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHt 349 (830)
T COG1202 271 VALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHT 349 (830)
T ss_pred HHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeee
Confidence 999999999998877778888877777554433321 12346799999999998888776 5677899999999998
Q ss_pred hhccCcHHH---HHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHH
Q 015093 194 MLSRGFKDQ---IYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTL 270 (413)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (413)
+-+...+.. +..-++.+.+..|+|++|||..+.. +..+.+....+.+.. .|-.+............|.+.+
T Consensus 350 L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~eK~~ii 423 (830)
T COG1202 350 LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLGAKLVLYDE-----RPVPLERHLVFARNESEKWDII 423 (830)
T ss_pred ccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhCCeeEeecC-----CCCChhHeeeeecCchHHHHHH
Confidence 876544433 3333444455899999999997553 455555555543332 2233444455555556777777
Q ss_pred HHHHHhc--------CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 271 CDLYETL--------AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 271 ~~~~~~~--------~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
..+.+.. -.+.++||++|+..|..+++.|...|+++..||++++..+|+.+...|.++++.++|+|.+++.|
T Consensus 424 ~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AG 503 (830)
T COG1202 424 ARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAG 503 (830)
T ss_pred HHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcC
Confidence 7776533 34789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE---cCCC-CChhHHHhhhcccCCCC--CcceEEEEecccc
Q 015093 343 IDVQQVSLVIN---YDLP-TQPENYLHRIGRSGRFG--RKGVAINFVTRDD 387 (413)
Q Consensus 343 ~d~~~~~~vi~---~~~~-~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~ 387 (413)
+|+|.-.+++- ++.. .|+.+|.||.||+||.+ ..|++++++.+.-
T Consensus 504 VDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 504 VDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred CCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 99996554431 1222 48999999999999975 4699999988764
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=314.95 Aligned_cols=335 Identities=23% Similarity=0.287 Sum_probs=254.9
Q ss_pred CCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 44 SMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 44 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
...+++.+.+.++..++.++++.|+.++.....+ +|++|++|||||||++++++++..+.+. +.+++++||+++|++
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~ 90 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAE 90 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHH
Confidence 3457889999999999999999999999886665 8999999999999999999999988765 459999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHH
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQ 202 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~ 202 (413)
+.+++++ ....+|+++...+|+...... ...+++|+|+||+++....++.......+++||+||+|.+.+...+..
T Consensus 91 Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~ 166 (766)
T COG1204 91 EKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV 166 (766)
T ss_pred HHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCce
Confidence 9999999 445679999999999874442 234689999999999999998877777899999999998877756666
Q ss_pred HHHHHhhCCC---CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCC-ceEEEEEeC--cc---ccH-HHHHHH
Q 015093 203 IYDIFQHLPG---KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEG-IKQFHVNVD--KE---EWK-LDTLCD 272 (413)
Q Consensus 203 ~~~~~~~~~~---~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~---~~~-~~~l~~ 272 (413)
+..+..+.+. .++++++|||.+ +..+...+...++..-...+.+..... ......... .. ... ...+..
T Consensus 167 lE~iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~ 245 (766)
T COG1204 167 LESIVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALEL 245 (766)
T ss_pred ehhHHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHH
Confidence 6555554433 479999999997 556777777666552222222221111 111111111 10 011 222222
Q ss_pred HHHhc-CCCcEEEEEcCcccHHHHHHHHhhC-------------------------------------CCeeEeecCCCC
Q 015093 273 LYETL-AITQSVIFVNTRRKVDWLTDQMRSR-------------------------------------DHTVSATHGDMD 314 (413)
Q Consensus 273 ~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------------------~~~~~~~~~~~~ 314 (413)
.+... .++.+||||+|++.+...++.+... -..+.++|++++
T Consensus 246 v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~ 325 (766)
T COG1204 246 VLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLP 325 (766)
T ss_pred HHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCC
Confidence 33332 5579999999999999999888730 124788999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE----EcC-----CCCChhHHHhhhcccCCCCC--cceEEEEe
Q 015093 315 QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----NYD-----LPTQPENYLHRIGRSGRFGR--KGVAINFV 383 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi----~~~-----~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~ 383 (413)
..+|..+.+.|+.|+++||+||++++.|+|+|.-+++| .++ .+.+..+++||+||+||.|- .|.++++.
T Consensus 326 ~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 326 REDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 99999999999999999999999999999999777665 234 34578899999999999874 46777777
Q ss_pred cc
Q 015093 384 TR 385 (413)
Q Consensus 384 ~~ 385 (413)
+.
T Consensus 406 ~~ 407 (766)
T COG1204 406 TS 407 (766)
T ss_pred cC
Confidence 33
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=308.99 Aligned_cols=307 Identities=17% Similarity=0.270 Sum_probs=232.8
Q ss_pred HHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH-HhhcccCceEEEEE
Q 015093 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR-ALGDYMGVKVHACV 143 (413)
Q Consensus 65 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~ 143 (413)
.+-.+.++.+.++++++++++||||||.++..++++... .+.+++++.|++.++.|.++.+. .+....+..+++..
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v 81 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV 81 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE
Confidence 344456667777889999999999999999999987753 23589999999999999999885 44444566676665
Q ss_pred CCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCcHHH-HHHHHhhCCCCceEEEEee
Q 015093 144 GGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGFKDQ-IYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~~-~~~~~~~~~~~~~~i~lSA 221 (413)
++.. ......+|+|+|++.|.+.+... ..++++++||+||+|+ ..+.++... +..+...++.+.++++|||
T Consensus 82 r~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 82 RGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred cccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeC
Confidence 5433 12345789999999999988764 4678899999999995 555554433 3455566777899999999
Q ss_pred eCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccH----HHHHHHHHHhcCCCcEEEEEcCcccHHHHHH
Q 015093 222 TMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWK----LDTLCDLYETLAITQSVIFVNTRRKVDWLTD 297 (413)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~ 297 (413)
|++... +..++++...+....... .+...+......... ...+..++.. ..+.+|||+++..+++.+++
T Consensus 155 Tl~~~~---l~~~l~~~~vI~~~gr~~---pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~ 227 (819)
T TIGR01970 155 TLDGER---LSSLLPDAPVVESEGRSF---PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQE 227 (819)
T ss_pred CCCHHH---HHHHcCCCcEEEecCcce---eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHH
Confidence 997543 345665544443332221 233344333222111 1233334433 35789999999999999999
Q ss_pred HHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC----------------
Q 015093 298 QMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------------- 358 (413)
Q Consensus 298 ~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~---------------- 358 (413)
.|++ .++.+..+||+++..+|.++++.|.+|..+|||||+++++|+|+|++++||+.+.+.
T Consensus 228 ~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 307 (819)
T TIGR01970 228 QLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETV 307 (819)
T ss_pred HHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEE
Confidence 9987 478899999999999999999999999999999999999999999999999988763
Q ss_pred --ChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 359 --QPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 359 --s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
|..++.||.||+||. ++|.|+.++++.+..
T Consensus 308 ~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 308 RISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred EECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 455799999999998 799999999876543
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=263.49 Aligned_cols=333 Identities=41% Similarity=0.703 Sum_probs=294.5
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
..|..+-+.+++.+++-..||.-|..+|.+.++...-|-+++.++..|.|||.++.++-++.+....+...++++|.|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 45677779999999999999999999999999999999999999999999999999999999988877788999999999
Q ss_pred HHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-c
Q 015093 120 LAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-R 197 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~ 197 (413)
|+-|..+++.++...+ +.++.+..||..+......+.+.++|+|+||+.++.+.+++.+.+.+++..|+|||+.++. .
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 9999999998888776 7899999999999988888888889999999999999999999999999999999998763 4
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC-ccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
+..+.++++++..|...|++.+|||.+.+..-.++.++.+|..+....+ .....++.+++..+.. ..+...+.+++..
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke-~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE-NEKNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh-hhhhhhhhhhhhh
Confidence 5678899999999999999999999999999999999999988776553 4566777777777665 4566677777777
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
.....++||+.|... + . | ..+ +++|+.+++|+|+.+++.+++++.
T Consensus 281 LeFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 LEFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred hhhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 777889999988764 1 0 2 123 899999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEecc-ccHHHHHHHHHHhccccccCCcc
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTR-DDDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
|.+..+|.++.||+||.|..|.++.|++. .+...+..+++-....+.++|++
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999986 56678889999999999999887
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=314.78 Aligned_cols=283 Identities=21% Similarity=0.267 Sum_probs=216.4
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+ .|+++|..+++.++.|+++++++|||+|||..++. +...+.. .+.+++|++||++|+.|+.+.++.++...+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~-~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLV-MSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHH-HHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 466 89999999999999999999999999999975443 3333322 2568999999999999999999999988888
Q ss_pred eEEEEECCcch-----HHHHHHH-hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-----------cCcH
Q 015093 138 KVHACVGGTSV-----REDQRIL-SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-----------RGFK 200 (413)
Q Consensus 138 ~~~~~~~~~~~-----~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-----------~~~~ 200 (413)
.+..+.++... ......+ ...++|+|+||+.|.+.+. .+....++++|+||||++.. .+|.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 87777766432 1222222 3468999999999998876 34455689999999999875 3443
Q ss_pred -HHHHHHHhhCCC------------------------CceEEEEeeeCChh-HHHHHHHhcCCCEEEEecCCccccCCce
Q 015093 201 -DQIYDIFQHLPG------------------------KIQVGVFSATMPPE-ALEITRKFMNKPVRILVKRDELTLEGIK 254 (413)
Q Consensus 201 -~~~~~~~~~~~~------------------------~~~~i~lSAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (413)
..+..++..++. ..+++++|||.++. ... .++.+...+.+........++.
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~ 307 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIV 307 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCce
Confidence 456666655543 57899999999764 322 2233343444444444556666
Q ss_pred EEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCccc---HHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCe
Q 015093 255 QFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRK---VDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR 331 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~---a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
+.+.... .+...+..+++... ..+||||++.+. ++.+++.|+..|+++..+||++ ++.++.|++|+.+
T Consensus 308 ~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~ 378 (1176)
T PRK09401 308 DSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD 378 (1176)
T ss_pred EEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC
Confidence 6666544 46667777776654 579999999888 9999999999999999999999 2345999999999
Q ss_pred EEEE----eCccccCCCCCC-CCEEEEcCCCC
Q 015093 332 VLIT----TDLLARGIDVQQ-VSLVINYDLPT 358 (413)
Q Consensus 332 vli~----t~~~~~G~d~~~-~~~vi~~~~~~ 358 (413)
|||+ |+++++|+|+|+ +++||+++.|.
T Consensus 379 VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 379 VLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999 589999999999 89999988874
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=300.27 Aligned_cols=310 Identities=16% Similarity=0.179 Sum_probs=223.0
Q ss_pred HHHHhhhhhhhCCCcEEEeCCCCCchhHHHH---------HHHHHhcc---cccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---------SGILQQLD---YESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 65 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~---------~~i~~~l~---~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.+|.++++.+.+++++++.|+||||||.+.. .+.+..+. ......++++++|+++|+.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999998732 22333322 12234589999999999999998887654
Q ss_pred cc---cCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhh
Q 015093 133 DY---MGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQH 209 (413)
Q Consensus 133 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 209 (413)
.. .+..+....|+..... ........+|+++|+.... ..+..+++||+||||+.... ...+..+++.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~-~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~--~DllL~llk~ 316 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDEL-INTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQI--GDIIIAVARK 316 (675)
T ss_pred CccccCCceEEEEECCcchHH-hhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccc--hhHHHHHHHH
Confidence 33 3566778888876221 1112225689999965211 23567899999999997543 3445555554
Q ss_pred CC-CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc--------ccHHHHHHHHHHh---c
Q 015093 210 LP-GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE--------EWKLDTLCDLYET---L 277 (413)
Q Consensus 210 ~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~---~ 277 (413)
.. ...|+++||||++.+...+ ..++.++..+..... ....+.+.+...... ......+...+.. .
T Consensus 317 ~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~ 393 (675)
T PHA02653 317 HIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPP 393 (675)
T ss_pred hhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcc
Confidence 43 3358999999998776655 577777766665422 223444444432210 1111122233322 2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHH-hcCCCeEEEEeCccccCCCCCCCCEEEEc
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREF-RSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
..+.+|||++++.+++.+++.|++. ++.+..+||++++. ++.++.| ++|+.+|||||+++++|+|+|++++||++
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 3468999999999999999999887 68999999999974 4566676 68999999999999999999999999999
Q ss_pred C---CCC---------ChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 355 D---LPT---------QPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 355 ~---~~~---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+ .|. |.++|.||.||+||. ++|.|+.++++.+...
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH
Confidence 8 443 888999999999999 7899999999876533
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=298.18 Aligned_cols=316 Identities=14% Similarity=0.117 Sum_probs=224.4
Q ss_pred CCcHHHHhhhhhhhCC---CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 62 KPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
.||+||.+++..+..+ ++.++++|||+|||++++..+... +.++||+||+..|+.||.+++.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 7999999999998753 368999999999999987665432 2479999999999999999999986544556
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--------CCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR--------QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL 210 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~--------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 210 (413)
+..++|+.... .....+|+|+|++++.....+ ..+....+++||+||||++.+.. +..++..+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHHHhc
Confidence 66666654211 122468999999988643221 11223457999999999985443 44555555
Q ss_pred CCCceEEEEeeeCChhHHH--HHHHhcCCCEEEEecC------CccccCCceEEEEEeC--------------------c
Q 015093 211 PGKIQVGVFSATMPPEALE--ITRKFMNKPVRILVKR------DELTLEGIKQFHVNVD--------------------K 262 (413)
Q Consensus 211 ~~~~~~i~lSAT~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--------------------~ 262 (413)
. ....++|||||..+... .+..+++... +.... ....+........... .
T Consensus 400 ~-a~~RLGLTATP~ReD~~~~~L~~LiGP~v-ye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 Q-AHCKLGLTATLVREDDKITDLNFLIGPKL-YEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred C-cCcEEEEeecCcccCCchhhhhhhcCCee-eecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 4 34579999999643221 2233333322 11111 1111111111111111 1
Q ss_pred cccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEEEEeCcc
Q 015093 263 EEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG-SSRVLITTDLL 339 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~ 339 (413)
...+...+..+++.+ .+.++||||.+...+..+++.|. +..+||+++..+|.++++.|+++ ..++||+|+++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 123555555666654 66799999999999999988883 46689999999999999999875 78999999999
Q ss_pred ccCCCCCCCCEEEEcCCC-CChhHHHhhhcccCCCCCcceE-------EEEeccccHHHHH--HHHHHhc
Q 015093 340 ARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRKGVA-------INFVTRDDDRMLA--DIQRFYN 399 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~-------~~~~~~~~~~~~~--~~~~~~~ 399 (413)
++|+|+|.+++||+++.| .|..+|+||+||++|.++.|.+ |.+++..+.++.. ..++||.
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 999999999999999887 4999999999999998765554 8888887766544 4556665
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=309.30 Aligned_cols=307 Identities=17% Similarity=0.277 Sum_probs=232.2
Q ss_pred HHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceEEEEE
Q 015093 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVHACV 143 (413)
Q Consensus 65 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~ 143 (413)
.+-.+.++++.+++++++.++||||||.++.+++++.... ..+++++.|++.++.|.++.+.+ +....+..+++..
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 3344566677788999999999999999999888876432 24899999999999999998854 4555577787777
Q ss_pred CCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCc-HHHHHHHHhhCCCCceEEEEee
Q 015093 144 GGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGF-KDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~-~~~~~~~~~~~~~~~~~i~lSA 221 (413)
++.... .....|+|+|++.|.+.+... ..++++++||+||+|+ ..+.+. ...+..++..++++.++++|||
T Consensus 85 r~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 85 RAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred cCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 665421 234689999999999988764 4678899999999997 333332 2334456666778899999999
Q ss_pred eCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH----HHHHHHHHhcCCCcEEEEEcCcccHHHHHH
Q 015093 222 TMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL----DTLCDLYETLAITQSVIFVNTRRKVDWLTD 297 (413)
Q Consensus 222 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~ 297 (413)
|++.. ....++.+...+...... ..+.+.+.......... ..+..++.. ..+.+|||+++..+++.+++
T Consensus 158 Tl~~~---~l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 158 TLDND---RLQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred CCCHH---HHHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHH
Confidence 99754 234566544444333221 12444444333221111 133334433 35899999999999999999
Q ss_pred HHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC----------------
Q 015093 298 QMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------------- 358 (413)
Q Consensus 298 ~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~---------------- 358 (413)
.|++ .++.+..+||+++..+|.++++.|.+|+.+|||||+++++|+|+|++++||+.+.+.
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9987 578899999999999999999999999999999999999999999999999987653
Q ss_pred --ChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 359 --QPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 359 --s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
|..++.||.||+||. ++|.||.++++.+..
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 456899999999998 699999999876543
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=297.04 Aligned_cols=334 Identities=20% Similarity=0.258 Sum_probs=238.6
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
....||.||.+.+...+ |+++||++|||+|||+++...+++.+..... .++++++|++.|+.|+...+..++.. ..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~ 134 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YS 134 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--cc
Confidence 44489999999999999 9999999999999999999999888877665 59999999999999999888887765 34
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCC-CCCccEEEEccchhhh-ccCcHHHHHHHHhhCCCCceE
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLR-PDYIRMFVLDEADEML-SRGFKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~-~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~ 216 (413)
+....+|..............+|+++||+.+.+.+.+.... ++.+.++|+||||+.. +..|...+...+.......|+
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccE
Confidence 44455553332222233446799999999999998876554 4889999999999976 445666666777777667799
Q ss_pred EEEeeeCChhHHHH--------------------------------------------------HHHhcC----CC-EEE
Q 015093 217 GVFSATMPPEALEI--------------------------------------------------TRKFMN----KP-VRI 241 (413)
Q Consensus 217 i~lSAT~~~~~~~~--------------------------------------------------~~~~~~----~~-~~~ 241 (413)
++|||||..+.... .+.++. .. ...
T Consensus 215 LgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~ 294 (746)
T KOG0354|consen 215 LGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEI 294 (746)
T ss_pred EEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccc
Confidence 99999997322111 000000 00 000
Q ss_pred Ee---cC-------Ccccc--------------------------CCce-------------------------------
Q 015093 242 LV---KR-------DELTL--------------------------EGIK------------------------------- 254 (413)
Q Consensus 242 ~~---~~-------~~~~~--------------------------~~~~------------------------------- 254 (413)
.. .. ..... ..++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~ 374 (746)
T KOG0354|consen 295 SDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIR 374 (746)
T ss_pred ccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhH
Confidence 00 00 00000 0000
Q ss_pred ----------EEEEEeCccccHHHHHHHHHHh----cCCCcEEEEEcCcccHHHHHHHHhh---CCCeeEeec-------
Q 015093 255 ----------QFHVNVDKEEWKLDTLCDLYET----LAITQSVIFVNTRRKVDWLTDQMRS---RDHTVSATH------- 310 (413)
Q Consensus 255 ----------~~~~~~~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a~~l~~~l~~---~~~~~~~~~------- 310 (413)
+.....+....++..+.+++.+ .+..+++||+.+++.|..+...|.+ .+++..++-
T Consensus 375 ~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~ 454 (746)
T KOG0354|consen 375 NFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQ 454 (746)
T ss_pred HHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccccc
Confidence 0000001112345555555433 3556899999999999999999973 223333333
Q ss_pred -CCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 311 -GDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 311 -~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
.+|++.++.++++.|++|.++|||||+++++|+|++.++.||.++...|+..++||.|| ||. +.|+|+++++..+..
T Consensus 455 ~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 455 STGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVI 532 (746)
T ss_pred ccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHH
Confidence 37899999999999999999999999999999999999999999999999999999999 997 569999999866555
Q ss_pred HHHHHHHHh
Q 015093 390 MLADIQRFY 398 (413)
Q Consensus 390 ~~~~~~~~~ 398 (413)
..+.....+
T Consensus 533 ~~E~~~~~~ 541 (746)
T KOG0354|consen 533 EFERNNLAK 541 (746)
T ss_pred HHHHHHHhH
Confidence 555444433
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=304.64 Aligned_cols=333 Identities=23% Similarity=0.332 Sum_probs=266.2
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
...+...+.+.|+..||.||.+|+..+.+|++++|..|||||||.+|++||++.+...... ++|++.|+++|++.+.+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 3445788888999999999999999999999999999999999999999999999887755 899999999999999999
Q ss_pred HHHhhcccC--ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC----CCCCCCccEEEEccchhhhccCcH-
Q 015093 128 MRALGDYMG--VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ----SLRPDYIRMFVLDEADEMLSRGFK- 200 (413)
Q Consensus 128 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~iIiDE~h~~~~~~~~- 200 (413)
++++....+ +.....+|++.......+..+.++|++|||+||...+... .+.+.++++||+||+|... ..++
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr-Gv~GS 213 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR-GVQGS 213 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc-ccchh
Confidence 999988877 7888888988877777778889999999999998855432 2345669999999999643 2233
Q ss_pred ------HHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc--------cccH
Q 015093 201 ------DQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK--------EEWK 266 (413)
Q Consensus 201 ------~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 266 (413)
+.+...++..+...++|+.|||..+. .++...+.+......+ .....+.....+....+. ....
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v-~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPV-DEDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeec-cCCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 33334444455688999999999754 4667777777766642 333334444444444431 1123
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcCcccHHHHH----HHHhhCC----CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 015093 267 LDTLCDLYETL--AITQSVIFVNTRRKVDWLT----DQMRSRD----HTVSATHGDMDQNSRDIIMREFRSGSSRVLITT 336 (413)
Q Consensus 267 ~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t 336 (413)
...+..+.... .+-++|+|+.+++.++.++ +.+...+ ..+..+++++...+|.+++..|++|+..++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st 371 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecc
Confidence 33444444333 4468999999999999987 4444445 568899999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEcCCCC-ChhHHHhhhcccCCCCCcceEEEEec
Q 015093 337 DLLARGIDVQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 337 ~~~~~G~d~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
++++.|+|+..++.||..+.|. +..+++|+.||+||.++.+..+.+..
T Consensus 372 ~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999999999 99999999999999987777666666
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=306.41 Aligned_cols=323 Identities=20% Similarity=0.259 Sum_probs=239.6
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.+|++||..++..++.+ ++++++|||+|||.++++++...+. ..+.++||++|+++|+.||.+.++++....+..+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 47999999999888777 8999999999999999888877663 23459999999999999999999988654455777
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++|+.........+ ...+|+|+||+.+...+.........+++||+||||++.+......+...+......++++++|
T Consensus 91 ~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 91 VFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred EEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 888877655444333 4579999999999988877777788899999999999865544444444444445567899999
Q ss_pred eeCChhHHH---HHHHhcCCCEEEEecCCc-----cccCCceE-------------------------------------
Q 015093 221 ATMPPEALE---ITRKFMNKPVRILVKRDE-----LTLEGIKQ------------------------------------- 255 (413)
Q Consensus 221 AT~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------------------------- 255 (413)
|||...... ....+....+.+...... .....+..
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 999533221 111111111100000000 00000000
Q ss_pred -----------------EE-------------------------------------------------------------
Q 015093 256 -----------------FH------------------------------------------------------------- 257 (413)
Q Consensus 256 -----------------~~------------------------------------------------------------- 257 (413)
..
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 00
Q ss_pred ----------EEeCccccHHHHHHHHHHh----cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCC--------CCH
Q 015093 258 ----------VNVDKEEWKLDTLCDLYET----LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD--------MDQ 315 (413)
Q Consensus 258 ----------~~~~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~--------~~~ 315 (413)
........|+..+..+++. ..++++||||+++..++.+++.|...++.+..++|. +++
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 0000111244445555543 466799999999999999999999989988888876 888
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
.+|.++++.|++|+.++||+|+++++|+|+|.+++||+++++++...|+||+||+||.| +|.+++++.....
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999999999999999999999999999999999999986 4888888887644
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=281.99 Aligned_cols=301 Identities=16% Similarity=0.175 Sum_probs=203.8
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchH---------
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVR--------- 149 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 149 (413)
++++.+|||||||.+++.+++..+... ...++++++|+++|+.|+++.++.+... .+...+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 479999999999999999999876543 3459999999999999999999887432 334444432210
Q ss_pred ---HHHHHH------hcCCcEEEeChHHHHHHHHcC-CC---C--CCCccEEEEccchhhhccCcHHHHHHHHhhCC-CC
Q 015093 150 ---EDQRIL------SAGVHVVVGTPGRVFDMLRRQ-SL---R--PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GK 213 (413)
Q Consensus 150 ---~~~~~~------~~~~~Iii~T~~~l~~~~~~~-~~---~--~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~ 213 (413)
...... ....+|+++||+.+...+... .. . .-..+++|+||+|.+....+.. +..++..+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 000000 113579999999998776652 11 0 1113789999999986543322 444444443 46
Q ss_pred ceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc-CCCcEEEEEcCcccH
Q 015093 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL-AITQSVIFVNTRRKV 292 (413)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a 292 (413)
.+++++|||++....++.........................+.........+...+..+++.. .++++||||++++.+
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRA 235 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHH
Confidence 8899999999866655555443321111111110000001111111122223445555555543 467999999999999
Q ss_pred HHHHHHHhhCCC--eeEeecCCCCHHHHHHH----HHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhh
Q 015093 293 DWLTDQMRSRDH--TVSATHGDMDQNSRDII----MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366 (413)
Q Consensus 293 ~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~----~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (413)
+.+++.|++.+. .+..+||++++.+|.+. ++.|++++..+||||+++++|+|++ ++.+|....| ..+|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999988765 58999999999998764 8899999999999999999999996 7777776554 7899999
Q ss_pred hcccCCCCCc----ceEEEEecccc
Q 015093 367 IGRSGRFGRK----GVAINFVTRDD 387 (413)
Q Consensus 367 ~GR~~R~g~~----g~~~~~~~~~~ 387 (413)
+||+||.|+. |.++++....+
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecCC
Confidence 9999998754 36677766544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=283.56 Aligned_cols=319 Identities=15% Similarity=0.142 Sum_probs=227.8
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC 142 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
++|+|.+++..+.-++..++.++||+|||+++++|++..... +..++|++|+..|+.|+.+.+..+...+++++...
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 444555555544445557999999999999999998655443 33799999999999999999999999999999988
Q ss_pred ECCcc---hHHHHHHHhcCCcEEEeChHHH-HHHHHc------CCCCCCCccEEEEccchhhhc-cC-------------
Q 015093 143 VGGTS---VREDQRILSAGVHVVVGTPGRV-FDMLRR------QSLRPDYIRMFVLDEADEMLS-RG------------- 198 (413)
Q Consensus 143 ~~~~~---~~~~~~~~~~~~~Iii~T~~~l-~~~~~~------~~~~~~~~~~iIiDE~h~~~~-~~------------- 198 (413)
.++.. .....+.....++|+++||+.| .+.+.. ....+..+.++|+||||.++- ..
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 76521 1222233345789999999999 444432 223456789999999998642 11
Q ss_pred --cHHHHHHHHhhCCC--------------------------------------------------------C-------
Q 015093 199 --FKDQIYDIFQHLPG--------------------------------------------------------K------- 213 (413)
Q Consensus 199 --~~~~~~~~~~~~~~--------------------------------------------------------~------- 213 (413)
.......+...+.. +
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 00111111111100 0
Q ss_pred ------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCE
Q 015093 214 ------------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPV 239 (413)
Q Consensus 214 ------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~ 239 (413)
.++.|||+|......++.. .++-.+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~-iY~l~v 384 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE-TYSLSV 384 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH-HhCCCE
Confidence 3678888887665555554 344333
Q ss_pred EEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHH
Q 015093 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNS 317 (413)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~ 317 (413)
...+...+........ ..+.....+..++...+.. ..+.++||||++++.++.+++.|.+.|+++..+|+++...+
T Consensus 385 ~~IPt~kp~~r~d~~d--~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 385 VKIPTNKPIIRIDYPD--KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred EEcCCCCCeeeeeCCC--eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 3222222221111111 1222334677777777765 35679999999999999999999999999999999999888
Q ss_pred HHHHHHHHhcCCCeEEEEeCccccCCCCC---------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 318 RDIIMREFRSGSSRVLITTDLLARGIDVQ---------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+..+...++.| .|+|||+++++|+|++ ++++|+.++.|..... .|+.||+||.|.+|.+++|++..|.
T Consensus 463 ~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 463 AQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred HHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 87777666655 7999999999999999 8999999999887766 9999999999999999999998765
Q ss_pred HH
Q 015093 389 RM 390 (413)
Q Consensus 389 ~~ 390 (413)
-+
T Consensus 540 l~ 541 (762)
T TIGR03714 540 LI 541 (762)
T ss_pred hh
Confidence 43
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=278.02 Aligned_cols=317 Identities=20% Similarity=0.219 Sum_probs=240.0
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|+++|..++..++.|+ |..+.||+|||+++.+|++..... +..++|++||..|+.|.++.+..+...+++++.+
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~ 177 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGLTVGC 177 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 89999999999999999 999999999999999999876544 4589999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcCC-------------------------CCCCCccEEEEccchhhh
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQS-------------------------LRPDYIRMFVLDEADEML 195 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~-------------------------~~~~~~~~iIiDE~h~~~ 195 (413)
+.|+.... .+.....++|+|+|...| +++++..- .....+.+.|+||+|.++
T Consensus 178 i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 178 VVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 99997643 333445789999999888 33443221 112446789999999643
Q ss_pred -ccC-----------------cH--------------------------------HHHHHHHhhCC--------------
Q 015093 196 -SRG-----------------FK--------------------------------DQIYDIFQHLP-------------- 211 (413)
Q Consensus 196 -~~~-----------------~~--------------------------------~~~~~~~~~~~-------------- 211 (413)
+.. .. ..+..++..++
T Consensus 256 iDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~ 335 (656)
T PRK12898 256 IDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVR 335 (656)
T ss_pred eccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHH
Confidence 110 00 00111100000
Q ss_pred ----------CC-------------------------------------------------------------ceEEEEe
Q 015093 212 ----------GK-------------------------------------------------------------IQVGVFS 220 (413)
Q Consensus 212 ----------~~-------------------------------------------------------------~~~i~lS 220 (413)
.+ .++.+||
T Consensus 336 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmT 415 (656)
T PRK12898 336 QALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMT 415 (656)
T ss_pred HHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhccc
Confidence 00 3688999
Q ss_pred eeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHH
Q 015093 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQ 298 (413)
Q Consensus 221 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~ 298 (413)
||......++...|..+++.+......... ....+... ....+...+...++.. .+.++||||++++.++.+++.
T Consensus 416 GTa~~~~~El~~~y~l~vv~IPt~kp~~r~--~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~ 492 (656)
T PRK12898 416 GTAREVAGELWSVYGLPVVRIPTNRPSQRR--HLPDEVFL-TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSAL 492 (656)
T ss_pred CcChHHHHHHHHHHCCCeEEeCCCCCccce--ecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHH
Confidence 999877777777777776655544433221 12222222 2356777788877664 357899999999999999999
Q ss_pred HhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC---CCC-----EEEEcCCCCChhHHHhhhccc
Q 015093 299 MRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHRIGRS 370 (413)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~ 370 (413)
|.+.|+++..+||+++. ++..+..+..+...|+|||+++++|+|++ .+. +||+++.|.|...|.|++||+
T Consensus 493 L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRT 570 (656)
T PRK12898 493 LREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRC 570 (656)
T ss_pred HHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccc
Confidence 99999999999998654 44445556666667999999999999999 665 999999999999999999999
Q ss_pred CCCCCcceEEEEeccccHHH
Q 015093 371 GRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 371 ~R~g~~g~~~~~~~~~~~~~ 390 (413)
||.|++|.++++++..|.-+
T Consensus 571 GRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 571 GRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred cCCCCCeEEEEEechhHHHH
Confidence 99999999999999876543
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=306.91 Aligned_cols=325 Identities=18% Similarity=0.191 Sum_probs=241.8
Q ss_pred HHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 49 ENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 49 ~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
+++.+.+++ .|+ .|+++|..+++.++.|+++++.||||+|||++++++++.... .+.+++|++||++|+.|+.+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~ 141 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEK 141 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHH
Confidence 344556655 788 699999999999999999999999999999966555443322 245899999999999999999
Q ss_pred HHHhhccc--CceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-----
Q 015093 128 MRALGDYM--GVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS----- 196 (413)
Q Consensus 128 ~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~----- 196 (413)
++.++... +..+..++|+........ ...+.++|+|+||+.|...+... ....++++|+||||.++.
T Consensus 142 l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~kni 219 (1638)
T PRK14701 142 IESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNI 219 (1638)
T ss_pred HHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecccccccc
Confidence 99988765 456677888877655432 22345899999999888766542 125689999999999875
Q ss_pred ------cCcHHHHHH----HHh----------------------hCCCCce-EEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 197 ------RGFKDQIYD----IFQ----------------------HLPGKIQ-VGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 197 ------~~~~~~~~~----~~~----------------------~~~~~~~-~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
.+|...+.. ++. .+++..+ .+.+|||.++.. . ...++.++..+..
T Consensus 220 d~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~-~-~~~l~~~~l~f~v 297 (1638)
T PRK14701 220 DRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG-D-RVKLYRELLGFEV 297 (1638)
T ss_pred chhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh-H-HHHHhhcCeEEEe
Confidence 245444432 221 2344445 567999997531 1 2234455665666
Q ss_pred cCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCccc---HHHHHHHHhhCCCeeEeecCCCCHHHHHH
Q 015093 244 KRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRK---VDWLTDQMRSRDHTVSATHGDMDQNSRDI 320 (413)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~---a~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 320 (413)
.........+.+.+...... .+ ..+..+++.. +..+||||++++. |+.+++.|.+.|+++..+|++ |..
T Consensus 298 ~~~~~~lr~i~~~yi~~~~~-~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 298 GSGRSALRNIVDVYLNPEKI-IK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKK 369 (1638)
T ss_pred cCCCCCCCCcEEEEEECCHH-HH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHH
Confidence 55555556677666544332 22 4677777765 4689999999875 589999999999999999985 889
Q ss_pred HHHHHhcCCCeEEEEe----CccccCCCCCC-CCEEEEcCCCC---ChhHHHhhh-------------cccCCCCCcceE
Q 015093 321 IMREFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLPT---QPENYLHRI-------------GRSGRFGRKGVA 379 (413)
Q Consensus 321 ~~~~f~~~~~~vli~t----~~~~~G~d~~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~g~~g~~ 379 (413)
.++.|++|+.+|||+| +.+++|+|+|+ +++||+++.|. |...|.|.. ||++|.|.+..+
T Consensus 370 ~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 370 GFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred HHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 9999999999999999 48899999998 99999999998 777665655 999999988777
Q ss_pred EEEeccccHH
Q 015093 380 INFVTRDDDR 389 (413)
Q Consensus 380 ~~~~~~~~~~ 389 (413)
+..+...+..
T Consensus 450 ~~~~~~~~~~ 459 (1638)
T PRK14701 450 VLDVFPEDVE 459 (1638)
T ss_pred HHHhHHHHHH
Confidence 7444444433
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=264.97 Aligned_cols=289 Identities=15% Similarity=0.209 Sum_probs=199.0
Q ss_pred HHHhhhhhhhCCCc--EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc----CceE
Q 015093 66 IQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM----GVKV 139 (413)
Q Consensus 66 ~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~----~~~~ 139 (413)
+|.++++++..+++ +++.+|||||||.+++++++.. ..++++++|+++|++|+.+.++++.... +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999998875 7889999999999998888742 2378999999999999999998886432 4556
Q ss_pred EEEECCcchH--H------------------HHHHHhcCCcEEEeChHHHHHHHHcCC----C----CCCCccEEEEccc
Q 015093 140 HACVGGTSVR--E------------------DQRILSAGVHVVVGTPGRVFDMLRRQS----L----RPDYIRMFVLDEA 191 (413)
Q Consensus 140 ~~~~~~~~~~--~------------------~~~~~~~~~~Iii~T~~~l~~~~~~~~----~----~~~~~~~iIiDE~ 191 (413)
..++|..... . ........+.|+++||+.|...+.... . .+..+++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666652221 0 001112357889999999987654321 1 1356899999999
Q ss_pred hhhhccCc-----HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHh--cCCCEEEEecCCcc----------------
Q 015093 192 DEMLSRGF-----KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKF--MNKPVRILVKRDEL---------------- 248 (413)
Q Consensus 192 h~~~~~~~-----~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------- 248 (413)
|.+..... ......+++......+++++|||+++.....+... ++.+..........
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 98653221 11233333433445789999999998777766654 44443222221000
Q ss_pred --ccCCceEEEEEeCccccHHHHHHHH-------HHhcCCCcEEEEEcCcccHHHHHHHHhhCC--CeeEeecCCCCHHH
Q 015093 249 --TLEGIKQFHVNVDKEEWKLDTLCDL-------YETLAITQSVIFVNTRRKVDWLTDQMRSRD--HTVSATHGDMDQNS 317 (413)
Q Consensus 249 --~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~--~~~~~~~~~~~~~~ 317 (413)
..+.+...+.. ....+...+..+ ++...++++||||++++.++.+++.|++.+ +.+..+||.+++.+
T Consensus 235 ~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 235 RPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred ceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 00123332322 112233222222 222356799999999999999999999864 57888999999988
Q ss_pred HHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccC
Q 015093 318 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 371 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 371 (413)
|.+. ++..|||||+++++|+|++.. .||. + |.+...|+||+||+|
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi~-~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRD-WLIF-S-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCc-eEEE-C-CCCHHHHhhhcccCC
Confidence 8654 378899999999999999986 5553 4 789999999999986
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=275.47 Aligned_cols=297 Identities=19% Similarity=0.237 Sum_probs=210.0
Q ss_pred CCCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 61 EKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..|++||.++++++.+ ++.+++++|||+|||.+++..+... +.++|||||+.+|+.||.+.+.+.....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cCCEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 3799999999999998 7889999999999999987666544 2249999999999999987777764322
Q ss_pred ceEEEEECCcchHHHHHHHhcC-CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 137 VKVHACVGGTSVREDQRILSAG-VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~-~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
..++.+.++... .. ..|.|+|++++........+....+++||+||||++.+..+. .+...+.....
T Consensus 108 ~~~g~~~~~~~~--------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~~~~ 175 (442)
T COG1061 108 DEIGIYGGGEKE--------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSAAYP 175 (442)
T ss_pred cccceecCceec--------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhcccc
Confidence 234444444321 11 369999999998753222233345899999999999766555 33333332222
Q ss_pred EEEEeeeCChhHH---HHHHHhcCCCEEEEecCC------ccccCCceEEEEEeC-------------------------
Q 015093 216 VGVFSATMPPEAL---EITRKFMNKPVRILVKRD------ELTLEGIKQFHVNVD------------------------- 261 (413)
Q Consensus 216 ~i~lSAT~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~------------------------- 261 (413)
+++|||||..... ......++ +..+..... ...+...........
T Consensus 176 ~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (442)
T COG1061 176 RLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLR 254 (442)
T ss_pred eeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 8999999864321 11222222 222222211 111111111111000
Q ss_pred ----------ccccHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC
Q 015093 262 ----------KEEWKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS 330 (413)
Q Consensus 262 ----------~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 330 (413)
....+...+..++..+ ...+++||+.+..++..++..+...+. +..+++.++..+|..+++.|+.|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~ 333 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGI 333 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCC
Confidence 0112333444444444 467999999999999999999998877 8899999999999999999999999
Q ss_pred eEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCC-CCCcce
Q 015093 331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR-FGRKGV 378 (413)
Q Consensus 331 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R-~g~~g~ 378 (413)
++|+++.++.+|+|+|+++++|+.+++.|...|.||+||+.| ...++.
T Consensus 334 ~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 334 KVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999 333443
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=280.94 Aligned_cols=321 Identities=17% Similarity=0.208 Sum_probs=238.3
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|+++|..+...+.+|+ +..+.||+|||+++++|++..... +..+.|++||..||.|.++.+..+...+++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 355 89999999998888776 999999999999999998755443 458999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhh-ccC-----------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~----------- 198 (413)
+++++.|+.......+. ...++|+++|++.| .+++... ......+.++|+||+|.++ +..
T Consensus 149 ~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~ 227 (790)
T PRK09200 149 TVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPR 227 (790)
T ss_pred eEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCc
Confidence 99999999873333322 34589999999888 4444332 1245668999999999754 110
Q ss_pred ----cHHHHHHHHhhCCC--------------------------------------------------------C-----
Q 015093 199 ----FKDQIYDIFQHLPG--------------------------------------------------------K----- 213 (413)
Q Consensus 199 ----~~~~~~~~~~~~~~--------------------------------------------------------~----- 213 (413)
....+..+...+.. +
T Consensus 228 ~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV 307 (790)
T PRK09200 228 VQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIV 307 (790)
T ss_pred cccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 00111111111100 0
Q ss_pred --------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCC
Q 015093 214 --------------------------------------------------------IQVGVFSATMPPEALEITRKFMNK 237 (413)
Q Consensus 214 --------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~ 237 (413)
.++.|||+|......++.. .++-
T Consensus 308 ~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~-~Y~l 386 (790)
T PRK09200 308 YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE-VYNM 386 (790)
T ss_pred ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH-HhCC
Confidence 3677888887655544444 3333
Q ss_pred CEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH
Q 015093 238 PVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 315 (413)
.+...+...+.......... ......+...+...+.. ..+.++||||++++.++.+++.|.+.|+++..+|+++..
T Consensus 387 ~v~~IPt~kp~~r~d~~~~i--~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~ 464 (790)
T PRK09200 387 EVVQIPTNRPIIRIDYPDKV--FVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAA 464 (790)
T ss_pred cEEECCCCCCcccccCCCeE--EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccH
Confidence 33322222222222222111 12335677777777755 356799999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCC---CCCC-----EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDV---QQVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
.++..+...++.| .|+|||+++++|+|+ |.+. +||+++.|.|...|.|++||+||.|.+|.+++|++..|
T Consensus 465 ~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 465 KEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred HHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 8887777776655 799999999999999 6898 99999999999999999999999999999999999876
Q ss_pred HHH
Q 015093 388 DRM 390 (413)
Q Consensus 388 ~~~ 390 (413)
.-+
T Consensus 543 ~l~ 545 (790)
T PRK09200 543 DLL 545 (790)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=275.80 Aligned_cols=320 Identities=20% Similarity=0.248 Sum_probs=239.6
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|..+...+..|+ +..++||+|||+++.+|++-.... +..+.|++||..||.|.++.+..+...+++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 344 79999999998887776 999999999999999988533333 337999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhhc-cCcH---------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEMLS-RGFK--------- 200 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~~-~~~~--------- 200 (413)
++.++.|+........ ...++|+++|+..| +++++.. ...+..+.++|+||+|.++- ....
T Consensus 127 sv~~i~g~~~~~~r~~--~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERRE--AYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHH--hcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 9999999887544433 33579999999999 7777665 24567789999999998653 1100
Q ss_pred ------HHHHHHHhhCCC--------------------------------------------------------C-----
Q 015093 201 ------DQIYDIFQHLPG--------------------------------------------------------K----- 213 (413)
Q Consensus 201 ------~~~~~~~~~~~~--------------------------------------------------------~----- 213 (413)
.....+.+.+.. +
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000001000000 0
Q ss_pred --------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCC
Q 015093 214 --------------------------------------------------------IQVGVFSATMPPEALEITRKFMNK 237 (413)
Q Consensus 214 --------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~ 237 (413)
.++.+||+|......++...| +-
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY-~l 363 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY-NL 363 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHh-CC
Confidence 367788888865554444444 33
Q ss_pred CEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH
Q 015093 238 PVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 315 (413)
.+...+...+.......... +.....+...+...+.. ..+.++||||++++.++.+++.|.+.|+++..+|++ +
T Consensus 364 ~vv~IPtnkp~~R~d~~d~i--~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q 439 (745)
T TIGR00963 364 EVVVVPTNRPVIRKDLSDLV--YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--N 439 (745)
T ss_pred CEEEeCCCCCeeeeeCCCeE--EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--h
Confidence 33333222222111111111 22234466666555532 266799999999999999999999999999999998 6
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCC-------CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQ-------VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
.+|+..+..|..+...|+|||+++++|+|++. ..+||.++.|.|...+.|+.||+||.|.+|.+.+|++..|.
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 78888999999999999999999999999998 55999999999999999999999999999999999998876
Q ss_pred HH
Q 015093 389 RM 390 (413)
Q Consensus 389 ~~ 390 (413)
-+
T Consensus 520 l~ 521 (745)
T TIGR00963 520 LM 521 (745)
T ss_pred HH
Confidence 44
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=291.56 Aligned_cols=291 Identities=21% Similarity=0.252 Sum_probs=211.5
Q ss_pred HHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH
Q 015093 50 NLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 50 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
++.+.+.+.....|+++|..+++.++.|+++++++|||+|||..+ +++...+.. .+.+++|++||++|+.|+.+.++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAK--KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHH
Confidence 344555554445899999999999999999999999999999744 444433322 25689999999999999999999
Q ss_pred HhhcccCceE---EEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc------
Q 015093 130 ALGDYMGVKV---HACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS------ 196 (413)
Q Consensus 130 ~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~------ 196 (413)
.++...++.. ..++|+........ ....+++|+|+||+.|...+.... . .++++|+||||++.+
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd 219 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVD 219 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHH
Confidence 9987766543 34667766544322 223458999999999988776522 2 689999999999986
Q ss_pred -----cCcHH-HHHHH----------------------HhhCCCCce--EEEEeeeCCh-hHHHHHHHhcCCCEEEEecC
Q 015093 197 -----RGFKD-QIYDI----------------------FQHLPGKIQ--VGVFSATMPP-EALEITRKFMNKPVRILVKR 245 (413)
Q Consensus 197 -----~~~~~-~~~~~----------------------~~~~~~~~~--~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~ 245 (413)
.+|.. .+..+ ++..+...+ ++++|||..+ ... ..++.+...+....
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~~v~~ 296 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGFEVGG 296 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccceEecC
Confidence 23433 23332 223344444 5678999533 322 12344444444444
Q ss_pred CccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCc---ccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHH
Q 015093 246 DELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTR---RKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIM 322 (413)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~---~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 322 (413)
......++.+.+..... +...+..+++.. +..+||||++. +.|+.+++.|.+.|+++..+||+++ ++.+
T Consensus 297 ~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l 368 (1171)
T TIGR01054 297 GSDTLRNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDY 368 (1171)
T ss_pred ccccccceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHH
Confidence 44445566666553332 234566677665 36799999999 9999999999999999999999986 3689
Q ss_pred HHHhcCCCeEEEEe----CccccCCCCCC-CCEEEEcCCC
Q 015093 323 REFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLP 357 (413)
Q Consensus 323 ~~f~~~~~~vli~t----~~~~~G~d~~~-~~~vi~~~~~ 357 (413)
+.|++|+.+|||+| +++++|+|+|+ +++||+++.|
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99999999999995 89999999999 8999997665
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=282.12 Aligned_cols=335 Identities=19% Similarity=0.220 Sum_probs=258.1
Q ss_pred HHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH
Q 015093 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
+........+|....++-|.+++..++.|++++|.+|||+||++||.+|++-. ++-.+||.|..+|.+.+...+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhh
Confidence 34445556789999999999999999999999999999999999998877533 338899999999998877666
Q ss_pred HHhhcccCceEEEEECCcchHHHH----HHHhc--CCcEEEeChHHHHHHHH--cCCCCCCC---ccEEEEccchhhhcc
Q 015093 129 RALGDYMGVKVHACVGGTSVREDQ----RILSA--GVHVVVGTPGRVFDMLR--RQSLRPDY---IRMFVLDEADEMLSR 197 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~Iii~T~~~l~~~~~--~~~~~~~~---~~~iIiDE~h~~~~~ 197 (413)
.. .++....+.++....... .+..+ ..+|++.||+++...-. .....+.. +.++|+||||....|
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 44 377777787776653322 22233 57899999999864321 11112222 789999999998765
Q ss_pred C--cH---HHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHH
Q 015093 198 G--FK---DQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272 (413)
Q Consensus 198 ~--~~---~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
+ |. ..+..+..+++ ..+++++|||....+...+...++-..... ....+.++++......-.........+..
T Consensus 401 gHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~-~~~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPEL-FKSSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred cccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcce-ecccCCCCCceEEEEeccCccchHHHHHH
Confidence 4 33 33444455555 478999999998877766655555443332 23344555555444433322333344444
Q ss_pred HHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE
Q 015093 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 273 ~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
.-.....+.+||+|.++..++.++..|...+..+..||++|+..+|+.+...|..++.+|++||=++++|+|-|+++.||
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 44555778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHH
Q 015093 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQ 395 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 395 (413)
++..|.|...|-|-+||+||.|.+..|++|+...|...+..+.
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll 601 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLL 601 (941)
T ss_pred ECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHH
Confidence 9999999999999999999999999999999988766655443
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=273.97 Aligned_cols=332 Identities=20% Similarity=0.286 Sum_probs=242.1
Q ss_pred HhCCCCCCcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhccc-------ccCceeEEEEcccHHHHHHHHHH
Q 015093 56 YAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDY-------ESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 56 ~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~-------~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
.-+++..++.+|..+++.+-+ +.+.||+||||||||..++++|+..+.+ .+.+.++++|+|+++||.++.+.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 346777899999999998755 6789999999999999999999988864 23456999999999999999999
Q ss_pred HHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC---CCCCCccEEEEccchhhhccCcHHHHH
Q 015093 128 MRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS---LRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
+.+-....|+++..++|+....... -..++|+|+||+++.-.-++.. ...+.+++||+||+|.+- ..++..+.
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLh-d~RGpvlE 259 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLH-DDRGPVLE 259 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhc-CcccchHH
Confidence 9888888899999999998866554 2358999999999965544433 224458999999999664 44566666
Q ss_pred HHHhhC-------CCCceEEEEeeeCChhHHHHHHHhcCCC-EEEEecCCccccCCceEEEEEeCcc----------ccH
Q 015093 205 DIFQHL-------PGKIQVGVFSATMPPEALEITRKFMNKP-VRILVKRDELTLEGIKQFHVNVDKE----------EWK 266 (413)
Q Consensus 205 ~~~~~~-------~~~~~~i~lSAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 266 (413)
.+..+. ....+++++|||+++ ..+.+..+--++ ..+..-...+.+-.+.....-.+.. +.+
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 655444 357899999999974 445554444332 2233333334443333333322221 112
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC-----------------------CCeeEeecCCCCHHHHHHHHH
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR-----------------------DHTVSATHGDMDQNSRDIIMR 323 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~-----------------------~~~~~~~~~~~~~~~r~~~~~ 323 (413)
.+.+.+.+. .+.+++|||.++..+...++.|.+. ......+|+++...+|.....
T Consensus 339 ~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 339 YDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 333333333 3468999999999988888888642 134678999999999999999
Q ss_pred HHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC----------CCChhHHHhhhcccCCCC--CcceEEEEeccccHHHH
Q 015093 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDL----------PTQPENYLHRIGRSGRFG--RKGVAINFVTRDDDRML 391 (413)
Q Consensus 324 ~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~----------~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~ 391 (413)
.|..|.++||+||..++.|+|+|.-.++|--.. ..+..+..|.+||+||.. ..|.++++.+..-...+
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 999999999999999999999986555553221 124567899999999974 56888888877654444
Q ss_pred HHH
Q 015093 392 ADI 394 (413)
Q Consensus 392 ~~~ 394 (413)
.++
T Consensus 497 ~sL 499 (1230)
T KOG0952|consen 497 ESL 499 (1230)
T ss_pred HHH
Confidence 433
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=256.97 Aligned_cols=326 Identities=19% Similarity=0.242 Sum_probs=246.9
Q ss_pred CCCCHHH-HHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 45 MGLKENL-LRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 45 ~~l~~~~-~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
++.+..+ .+.+...+| +|+..|.+++..|... -+-+++|.-|||||.+++++++..+.++ .++...+||
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPT 320 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPT 320 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccH
Confidence 3344443 445566777 8999999999998764 2479999999999999999998887664 489999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
.-||.|.++.+.++....++++..++|.......... ..+..+|+|+|.. +......+.++.++|+||=|+
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEEEecccc
Confidence 9999999999999999999999999998776554433 3456899999954 444556677799999999999
Q ss_pred hhccCcHHHHHHHHhhCCC-CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHH
Q 015093 194 MLSRGFKDQIYDIFQHLPG-KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
+.-.. ...++.... .+.++.|||||.|.... ...+++...-.+..-+.....+.............+..+..
T Consensus 396 FGV~Q-----R~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ 468 (677)
T COG1200 396 FGVHQ-----RLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIRE 468 (677)
T ss_pred ccHHH-----HHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHH
Confidence 75433 233334444 57899999999876543 34444443333333333334455444444333333333333
Q ss_pred HHHhcCCCcEEEEEcCccc--------HHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 273 LYETLAITQSVIFVNTRRK--------VDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 273 ~~~~~~~~~~lIf~~~~~~--------a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
-+. .+.++-+.||-+++ |..+++.|+.. ++++..+||.|+.++++++++.|++|+.+|||||.+.+.|
T Consensus 469 ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVG 546 (677)
T COG1200 469 EIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVG 546 (677)
T ss_pred HHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEec
Confidence 333 55688999998765 45666777643 5679999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCC-CChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 343 IDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+|+|+.+.+|+.+.. +..+++-|.-||+||.+..++|++++.++..
T Consensus 547 VdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 547 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred ccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 999999998887653 5678999999999999999999999998873
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=241.96 Aligned_cols=339 Identities=17% Similarity=0.264 Sum_probs=261.1
Q ss_pred CCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 44 SMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 44 ~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
+++++....+.|+. +.....||.|..++++...++++++..|||.||+++|.+|++-. .+.+||+||.++|++
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislme 148 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLME 148 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHHH
Confidence 46777888777764 67788999999999999999999999999999999998888643 348999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHHH------hcCCcEEEeChHHHHHHHH-----cCCCCCCCccEEEEccc
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRIL------SAGVHVVVGTPGRVFDMLR-----RQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~T~~~l~~~~~-----~~~~~~~~~~~iIiDE~ 191 (413)
.+.-.++++ ++....+....+.......- +....+++.||+.+...-. .+.+....+.+|-+||+
T Consensus 149 dqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidev 224 (695)
T KOG0353|consen 149 DQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEV 224 (695)
T ss_pred HHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecce
Confidence 988888887 44444444444333222211 2345789999998854321 23445566899999999
Q ss_pred hhhhccC--cH---HHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc-ccc
Q 015093 192 DEMLSRG--FK---DQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK-EEW 265 (413)
Q Consensus 192 h~~~~~~--~~---~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 265 (413)
|....|+ |. ..+ .++.+..++.+++++|||..+++.+..+..+.-.-.+... ..+..+++......-+. .++
T Consensus 225 hccsqwghdfr~dy~~l-~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~nl~yev~qkp~n~dd 302 (695)
T KOG0353|consen 225 HCCSQWGHDFRPDYKAL-GILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRPNLKYEVRQKPGNEDD 302 (695)
T ss_pred eehhhhCcccCcchHHH-HHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCCCceeEeeeCCCChHH
Confidence 9987654 22 233 3444444578899999999888777666655543333322 33445555555444433 344
Q ss_pred HHHHHHHHHHh-cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 266 KLDTLCDLYET-LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 266 ~~~~l~~~~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
....+..+++. ..+...+|+|-+.+.++.++..|+..|+.+..||..+.+.++.-.-+.|..|+++|+|+|-++++|+|
T Consensus 303 ~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgid 382 (695)
T KOG0353|consen 303 CIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGID 382 (695)
T ss_pred HHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCC
Confidence 55666666654 35668899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHh-------------------------------------------hhcccCCCCCcceEEE
Q 015093 345 VQQVSLVINYDLPTQPENYLH-------------------------------------------RIGRSGRFGRKGVAIN 381 (413)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q-------------------------------------------~~GR~~R~g~~g~~~~ 381 (413)
-|+++.||+-+.|.|...|-| ..||+||.+.+..|++
T Consensus 383 kpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cil 462 (695)
T KOG0353|consen 383 KPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCIL 462 (695)
T ss_pred CCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEE
Confidence 999999999999999999999 6799999999999999
Q ss_pred EeccccHHHHHHH
Q 015093 382 FVTRDDDRMLADI 394 (413)
Q Consensus 382 ~~~~~~~~~~~~~ 394 (413)
+|.-.|.....++
T Consensus 463 yy~~~difk~ssm 475 (695)
T KOG0353|consen 463 YYGFADIFKISSM 475 (695)
T ss_pred EechHHHHhHHHH
Confidence 9987776655544
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=274.71 Aligned_cols=336 Identities=16% Similarity=0.127 Sum_probs=223.9
Q ss_pred CCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
.|.|||..++..+... ..+++..++|.|||..+.+.+...+..+. ..++|||||. .|..||..++.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~-~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-AERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-CCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 6999999998776553 45999999999999988666655444433 4489999997 89999999996543 3444
Q ss_pred EEEECCcchHHHHH--HHhcCCcEEEeChHHHHHHHH-cCCCCCCCccEEEEccchhhhccC--cHHHHHHHHhhCCCCc
Q 015093 140 HACVGGTSVREDQR--ILSAGVHVVVGTPGRVFDMLR-RQSLRPDYIRMFVLDEADEMLSRG--FKDQIYDIFQHLPGKI 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~--~~~~~~~Iii~T~~~l~~~~~-~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~~~~~ 214 (413)
..+.++........ ......+++|+|++.+...-. ...+....+++||+||||++.+.. .......+........
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 44443321110000 001135799999998875211 111223358999999999986321 1122222222222344
Q ss_pred eEEEEeeeCChh-------------------HHHHH------------------------------HHhcCCCE------
Q 015093 215 QVGVFSATMPPE-------------------ALEIT------------------------------RKFMNKPV------ 239 (413)
Q Consensus 215 ~~i~lSAT~~~~-------------------~~~~~------------------------------~~~~~~~~------ 239 (413)
.++++||||... ...+. ..++.+..
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 689999999510 00000 00000000
Q ss_pred ---------------------------EEEecC-----CccccCCceEEEEEeC--------------------------
Q 015093 240 ---------------------------RILVKR-----DELTLEGIKQFHVNVD-------------------------- 261 (413)
Q Consensus 240 ---------------------------~~~~~~-----~~~~~~~~~~~~~~~~-------------------------- 261 (413)
.+.... ..+............+
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 000000 0000000111101000
Q ss_pred ---------ccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHH-hhCCCeeEeecCCCCHHHHHHHHHHHhcC--C
Q 015093 262 ---------KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM-RSRDHTVSATHGDMDQNSRDIIMREFRSG--S 329 (413)
Q Consensus 262 ---------~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~ 329 (413)
....+...+..+++.....|+||||+++..+..+.+.| ...|+++..+||+++..+|+++++.|+++ .
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 01234556777777777889999999999999999999 46799999999999999999999999974 5
Q ss_pred CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhcccc
Q 015093 330 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVI 402 (413)
Q Consensus 330 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (413)
.+|||||+++++|+|++++++||+++.|+++..|.||+||++|.|+.+.+.+++..........+.+.|...+
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 8999999999999999999999999999999999999999999999988777776655445556666665533
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=245.55 Aligned_cols=277 Identities=30% Similarity=0.505 Sum_probs=227.1
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhh---cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALG---DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRM 185 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~ 185 (413)
+.++|+-|+++|++|.++.+++|- ....++..++.||.....+.+...++.+|+|+||.++.+.+......+..+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 568999999999999999666553 33344555778888888888888899999999999999999998888999999
Q ss_pred EEEccchhhhccCcHHHHHHHHhhCCC------CceEEEEeeeCCh-hHHHHHHHhcCCCEEEEecCCccccCCceEEEE
Q 015093 186 FVLDEADEMLSRGFKDQIYDIFQHLPG------KIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFHV 258 (413)
Q Consensus 186 iIiDE~h~~~~~~~~~~~~~~~~~~~~------~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (413)
+|+||++.++..++...+.++...+|. +.+.+..|||+.. +......+.+..|..+....+...++...++..
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 999999999988889888888887764 5688899999863 445566677777877777777766666555554
Q ss_pred EeCcc-----------------------------ccHHHHHHH---------HHHhcCCCcEEEEEcCcccHHHHHHHHh
Q 015093 259 NVDKE-----------------------------EWKLDTLCD---------LYETLAITQSVIFVNTRRKVDWLTDQMR 300 (413)
Q Consensus 259 ~~~~~-----------------------------~~~~~~l~~---------~~~~~~~~~~lIf~~~~~~a~~l~~~l~ 300 (413)
.+... ......... .++++...+++|||.++..++.+.+++.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 33221 011111111 2344556789999999999999999998
Q ss_pred hCC---CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc
Q 015093 301 SRD---HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 377 (413)
Q Consensus 301 ~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 377 (413)
+.| +.++.+|++..+.+|.+-++.|+.+..++||||+++++|+|+..+..+|++..|.....|.+|+||+||+.+-|
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermg 606 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMG 606 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcc
Confidence 864 68999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eEEEEecc
Q 015093 378 VAINFVTR 385 (413)
Q Consensus 378 ~~~~~~~~ 385 (413)
.++.++.-
T Consensus 607 laislvat 614 (725)
T KOG0349|consen 607 LAISLVAT 614 (725)
T ss_pred eeEEEeec
Confidence 88887753
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=243.91 Aligned_cols=329 Identities=19% Similarity=0.247 Sum_probs=237.4
Q ss_pred HHHHHHHh-CCCCC-CcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 50 NLLRGIYA-YGFEK-PSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 50 ~~~~~l~~-~~~~~-~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
.+.++|++ +|+.. -++.|.+++..+.++ +++.|++|||+||+++|.+|.+-. +...+|+.|..+|..++.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHH
Confidence 34455554 56654 578999999998886 579999999999999999988754 3378999999999998888
Q ss_pred HHHHhhcccCceEEEEECCcchHHHHHHH------hcCCcEEEeChHHHHHHH----HcCCCCCCCccEEEEccchhhhc
Q 015093 127 VMRALGDYMGVKVHACVGGTSVREDQRIL------SAGVHVVVGTPGRVFDML----RRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~T~~~l~~~~----~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
-+.++ .+.+..+....+..+..+++ .....+++.||++-.... .+.-..-.-++++|+||||....
T Consensus 80 HL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 80 HLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred HHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh
Confidence 88776 33333333333333333332 234578999998653221 11111223378999999999876
Q ss_pred cC--cHHH---HHHHHhhCCCCceEEEEeeeCChhHHHHH--HHhcCCCEEEEecCCccccCCceEEEEEeC---ccccH
Q 015093 197 RG--FKDQ---IYDIFQHLPGKIQVGVFSATMPPEALEIT--RKFMNKPVRILVKRDELTLEGIKQFHVNVD---KEEWK 266 (413)
Q Consensus 197 ~~--~~~~---~~~~~~~~~~~~~~i~lSAT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 266 (413)
|+ |... +..+...++ ....+++|||.++.+.+.+ ..-+.+|+.+...+.... ..++... .-.+.
T Consensus 156 WGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~-----NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRD-----NLFYDNHMKSFITDC 229 (641)
T ss_pred hccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhh-----hhhHHHHHHHHhhhH
Confidence 54 3332 333444443 6779999999988766543 334455554443322111 0111000 00122
Q ss_pred HHHHHHHHHhc-------------CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEE
Q 015093 267 LDTLCDLYETL-------------AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL 333 (413)
Q Consensus 267 ~~~l~~~~~~~-------------~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 333 (413)
+..|.++.... ..|-.||||.++++++.++-.|...|+++..||.++...+|-++.+.|-+++..|+
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 23333332211 12467999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
++|..+++|+|-|+++.||+++++.+...|-|-.||+||.|++.+|.++|+..|...+..+
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred EEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877655
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=273.77 Aligned_cols=303 Identities=20% Similarity=0.274 Sum_probs=206.5
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc----HHHHHHHHHHHHH-hhcccCce
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT----RELAQQIEKVMRA-LGDYMGVK 138 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~----~~l~~q~~~~~~~-~~~~~~~~ 138 (413)
+.+..+.++++..++.++|+|+||||||..... ++..+.... ...+++.-|. ++++.+..+++.. ++. .
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq-~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG~----~ 149 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPK-ICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETELGG----C 149 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhcc----e
Confidence 444556777777788899999999999986432 332222221 2245555675 4666666666653 332 3
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCcHHH-HHHHHhhCCCCceE
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGFKDQ-IYDIFQHLPGKIQV 216 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~~-~~~~~~~~~~~~~~ 216 (413)
+++...... .....+.|+++|++.|++.+..... ++.+++||+||||+ ..+.++... +..++... ++.++
T Consensus 150 VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlKv 221 (1294)
T PRK11131 150 VGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLKV 221 (1294)
T ss_pred eceeecCcc------ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcC-CCceE
Confidence 332221111 1134679999999999999876544 78899999999995 666665543 33333332 46799
Q ss_pred EEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc-----ccHHHHHHHHHH---hcCCCcEEEEEcC
Q 015093 217 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE-----EWKLDTLCDLYE---TLAITQSVIFVNT 288 (413)
Q Consensus 217 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~---~~~~~~~lIf~~~ 288 (413)
|++|||++. ..+.+.+.+.+. +.+..... .+...+...... ...+..+...+. ....+.+|||+++
T Consensus 222 ILmSATid~--e~fs~~F~~apv-I~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 222 IITSATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred EEeeCCCCH--HHHHHHcCCCCE-EEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 999999964 344444444443 33332221 233333333211 112233322222 2355789999999
Q ss_pred cccHHHHHHHHhhCCCe---eEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC---------
Q 015093 289 RRKVDWLTDQMRSRDHT---VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL--------- 356 (413)
Q Consensus 289 ~~~a~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------- 356 (413)
..+++.+++.|.+.++. +..+||+++..+|.++++. .|..+|||||+++++|+|+|++++||+++.
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 99999999999987654 6789999999999998875 578899999999999999999999999862
Q ss_pred ---------CCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 357 ---------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 357 ---------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
+.|..+|.||+||+||. .+|.|+.+|++.+..
T Consensus 374 ~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 374 TKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 35668999999999998 689999999876543
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=262.37 Aligned_cols=315 Identities=20% Similarity=0.251 Sum_probs=217.5
Q ss_pred CCcHHHHhhhhhhhCC---CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 62 KPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
.|++.|.++++.+..+ +++++.++||||||.+++.++...+.. +.+++|++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 6999999999999874 679999999999999998887776654 3489999999999999999998754 567
Q ss_pred EEEEECCcchHHHH----HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc-----H-HHHHHHHh
Q 015093 139 VHACVGGTSVREDQ----RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF-----K-DQIYDIFQ 208 (413)
Q Consensus 139 ~~~~~~~~~~~~~~----~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~-----~-~~~~~~~~ 208 (413)
+..++++....... .......+|+|+|++.+. ..+.++++||+||+|....... . ..+ ...+
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHH
Confidence 88888887654332 233456799999998764 3456789999999998653321 1 122 2333
Q ss_pred hCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC--ccccCCceEEEEEe--Cc--cccHHHHHHHHHHhc--CCC
Q 015093 209 HLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD--ELTLEGIKQFHVNV--DK--EEWKLDTLCDLYETL--AIT 280 (413)
Q Consensus 209 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~--~~~ 280 (413)
....+.+++++||||+......... +.......... ....+.+....... .. ...-...+.+.+++. .++
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~ 367 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGE 367 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCC
Confidence 4456789999999998554433322 22111111111 11122222211100 00 001112333333322 344
Q ss_pred cEEEEEcCcc------------------------------------------------------------cHHHHHHHHh
Q 015093 281 QSVIFVNTRR------------------------------------------------------------KVDWLTDQMR 300 (413)
Q Consensus 281 ~~lIf~~~~~------------------------------------------------------------~a~~l~~~l~ 300 (413)
+++||+|.+. .++.+.+.|+
T Consensus 368 qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~ 447 (679)
T PRK05580 368 QVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELA 447 (679)
T ss_pred eEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHH
Confidence 7888877531 3456666676
Q ss_pred hC--CCeeEeecCCCC--HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCC--CC----------hhHHH
Q 015093 301 SR--DHTVSATHGDMD--QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQ----------PENYL 364 (413)
Q Consensus 301 ~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--~s----------~~~~~ 364 (413)
+. +.++..+|+++. ..+++++++.|++|+.+|||+|++++.|+|+|+++.|+.++.. .+ ...|.
T Consensus 448 ~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~ 527 (679)
T PRK05580 448 ELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLT 527 (679)
T ss_pred HhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHH
Confidence 64 678889999886 4578999999999999999999999999999999999665443 22 25689
Q ss_pred hhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 365 HRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 365 Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
|++||+||.++.|.+++.....+...+.
T Consensus 528 q~~GRagR~~~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 528 QVAGRAGRAEKPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred HHHhhccCCCCCCEEEEEeCCCCCHHHH
Confidence 9999999999999999988877655443
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=256.57 Aligned_cols=308 Identities=18% Similarity=0.254 Sum_probs=245.1
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+|-|+|..++..+-.+.+++|.|.|.+|||.++-++|...+..++ ++++..|-++|-+|-++++..-.. .|++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~----DVGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK----DVGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc----ccce
Confidence 789999999999999999999999999999999999998887766 999999999999999999876443 3667
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
.+|+.+ +.+++.-+|+|.+.|.+++.+++.-+..+..||+||+|.+.+..++-.|.+.+-.+|++.+.+++||
T Consensus 202 MTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 777766 3456788999999999999998888888999999999999999888888898999999999999999
Q ss_pred eCChhHHHHHHHhc---CCCEEEEecCCccccCCceEEEEEe---------Ccc----cc--------------------
Q 015093 222 TMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFHVNV---------DKE----EW-------------------- 265 (413)
Q Consensus 222 T~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~~-------------------- 265 (413)
|+++ ..+++.+.+ ..|+++. +.++++..++++.+.. +.. ++
T Consensus 275 TiPN-A~qFAeWI~~ihkQPcHVV--YTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~ 351 (1041)
T KOG0948|consen 275 TIPN-ARQFAEWICHIHKQPCHVV--YTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKK 351 (1041)
T ss_pred cCCC-HHHHHHHHHHHhcCCceEE--eecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccc
Confidence 9975 445555544 4555443 3444444555543321 110 00
Q ss_pred ------------------HHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC------------------------
Q 015093 266 ------------------KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD------------------------ 303 (413)
Q Consensus 266 ------------------~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~------------------------ 303 (413)
.+-.+...+-.....|++||+-|+++|+.++-.+.+.+
T Consensus 352 ~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Lsee 431 (1041)
T KOG0948|consen 352 ANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEE 431 (1041)
T ss_pred cccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChh
Confidence 12233333334455689999999999999999887542
Q ss_pred ---------------CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc----CC----CCCh
Q 015093 304 ---------------HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY----DL----PTQP 360 (413)
Q Consensus 304 ---------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~----~~----~~s~ 360 (413)
..+.++||++-+--++.+.-.|++|-+++|+||.+++.|+|+|.-.+|+-. +. -.|.
T Consensus 432 Dr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwiss 511 (1041)
T KOG0948|consen 432 DRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISS 511 (1041)
T ss_pred hccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecc
Confidence 237889999999999999999999999999999999999999976665531 11 1367
Q ss_pred hHHHhhhcccCCCCCc--ceEEEEeccc
Q 015093 361 ENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 386 (413)
.+|+||.||+||.|.+ |.|++++++.
T Consensus 512 GEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 512 GEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceEEecccccccCCCCCceEEEEecCc
Confidence 7999999999999964 8899998875
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=247.73 Aligned_cols=306 Identities=20% Similarity=0.284 Sum_probs=203.0
Q ss_pred EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHH----HHHHh
Q 015093 81 IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED----QRILS 156 (413)
Q Consensus 81 lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (413)
|+.||||||||.+++..+...+.. +.+++|++|+++|+.|+.+.+++.. +..+..++++...... .....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 578999999999998776665543 3489999999999999999998754 5567788877654432 23334
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-----cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHH
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-----FKDQIYDIFQHLPGKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 231 (413)
...+|+|+|++.+. ..+.++++||+||.|....+. +...-...++....+.+++++||||+.+.....
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 56799999998774 245678999999999865322 111111223333457889999999875443332
Q ss_pred HHhcCCCEEEEec--CCccccCCceEEEEEeCccc---cHHHHHHHHHHhc--CCCcEEEEEcCccc-------------
Q 015093 232 RKFMNKPVRILVK--RDELTLEGIKQFHVNVDKEE---WKLDTLCDLYETL--AITQSVIFVNTRRK------------- 291 (413)
Q Consensus 232 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~--~~~~~lIf~~~~~~------------- 291 (413)
. .+........ ......+.+... ...... .....+.+.+++. .++++|||+|++..
T Consensus 148 ~--~g~~~~~~l~~r~~~~~~p~v~vi--d~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 148 K--QKAYRLLVLTRRVSGRKPPEVKLI--DMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYIL 223 (505)
T ss_pred h--cCCeEEeechhhhcCCCCCeEEEE--ecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCcc
Confidence 2 1221111111 111112222221 121111 1123344444332 34589999776532
Q ss_pred -----------------------------------------------HHHHHHHHhhC--CCeeEeecCCCCHHHH--HH
Q 015093 292 -----------------------------------------------VDWLTDQMRSR--DHTVSATHGDMDQNSR--DI 320 (413)
Q Consensus 292 -----------------------------------------------a~~l~~~l~~~--~~~~~~~~~~~~~~~r--~~ 320 (413)
.+.+.+.|++. +.++..+|++++...+ ++
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~ 303 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEA 303 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHH
Confidence 46777777765 6788899999876655 88
Q ss_pred HHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC------------ChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 321 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 321 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+++.|++|+.+|||+|++++.|+|+|+++.|+.++... ....+.|++||+||.++.|.+++.....+.
T Consensus 304 ~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 304 LLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred HHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 99999999999999999999999999999986554321 235689999999999999999987766655
Q ss_pred HHHH-----HHHHHhccccc
Q 015093 389 RMLA-----DIQRFYNVVIE 403 (413)
Q Consensus 389 ~~~~-----~~~~~~~~~~~ 403 (413)
..+. ++..|++...+
T Consensus 384 ~~~~~~~~~d~~~f~~~el~ 403 (505)
T TIGR00595 384 PAIQAALTGDYEAFYEQELA 403 (505)
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 4333 34556655443
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=254.78 Aligned_cols=310 Identities=16% Similarity=0.164 Sum_probs=201.6
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc--Cc
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM--GV 137 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~--~~ 137 (413)
...|+|+|..+......++.++|.+|||+|||.+++.++...+.. ....+++|..||++.++|++++++++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 348999999886544446679999999999999998776654433 334589999999999999999987644322 34
Q ss_pred eEEEEECCcchHHHH---------------------HHHh------cCCcEEEeChHHHHHHHHcCC------CCCCCcc
Q 015093 138 KVHACVGGTSVREDQ---------------------RILS------AGVHVVVGTPGRVFDMLRRQS------LRPDYIR 184 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~---------------------~~~~------~~~~Iii~T~~~l~~~~~~~~------~~~~~~~ 184 (413)
++.+.+|........ ..+. --.+|+|+|.++++....... +.+. -+
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La-~s 441 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG-RS 441 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc-cC
Confidence 566666654311100 0011 125899999999885443221 1122 26
Q ss_pred EEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCC--EE----E--E--ecC---Ccc--
Q 015093 185 MFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKP--VR----I--L--VKR---DEL-- 248 (413)
Q Consensus 185 ~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~----~--~--~~~---~~~-- 248 (413)
+||+||+|.+ +......+..+++... ...++|+||||++......+...++.. .. + . ... ...
T Consensus 442 vvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 442 VLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred eEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 8999999975 3323344555555432 356799999999877665443322211 00 0 0 000 000
Q ss_pred --cc---CCceEEEE-Ee--CccccHHHHHHHHHHh-cCCCcEEEEEcCcccHHHHHHHHhhCC---CeeEeecCCCCHH
Q 015093 249 --TL---EGIKQFHV-NV--DKEEWKLDTLCDLYET-LAITQSVIFVNTRRKVDWLTDQMRSRD---HTVSATHGDMDQN 316 (413)
Q Consensus 249 --~~---~~~~~~~~-~~--~~~~~~~~~l~~~~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~~---~~~~~~~~~~~~~ 316 (413)
.. +.-..... .. .........+..+++. ..+++++||||+++.|+.+++.|++.+ .++..+||.++..
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 00 00001111 01 1101112333444443 245689999999999999999999764 5799999999999
Q ss_pred HHH----HHHHHH-hcCC---CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCC
Q 015093 317 SRD----IIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 375 (413)
Q Consensus 317 ~r~----~~~~~f-~~~~---~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 375 (413)
+|. ++++.| ++|+ ..|||+|++++.|+|+ +++.+|....| ...++||+||++|++.
T Consensus 601 dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 601 DRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 884 556777 5565 4799999999999999 57888876665 6799999999999875
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=247.48 Aligned_cols=312 Identities=18% Similarity=0.249 Sum_probs=234.4
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.++| +|-.+|++|+.++.+|.+++|.|+|.+|||+++-++|.-.- .+ +.+++|..|-++|-+|-++.|+.-...
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--~h-~TR~iYTSPIKALSNQKfRDFk~tF~D-- 366 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--KH-MTRTIYTSPIKALSNQKFRDFKETFGD-- 366 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--hh-ccceEecchhhhhccchHHHHHHhccc--
Confidence 3444 79999999999999999999999999999999987775432 22 449999999999999999999886543
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceE
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 216 (413)
+++++|+.. +.+.+.++|+|.+.|.+++.+..-..+++..||+||+|.+-+..++-.|.+++-.+|...++
T Consensus 367 --vgLlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 367 --VGLLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred --cceeeccee-------eCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 337888776 34568899999999999999988888889999999999988888889999999999999999
Q ss_pred EEEeeeCChhHHH--HHHHhcCCCEEEEecCCccccCCceEEEEEe----------------------------------
Q 015093 217 GVFSATMPPEALE--ITRKFMNKPVRILVKRDELTLEGIKQFHVNV---------------------------------- 260 (413)
Q Consensus 217 i~lSAT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 260 (413)
|++|||.++..+. ++-+.-+..+.+... ..++-.+.++...-
T Consensus 438 IlLSATVPN~~EFA~WIGRtK~K~IyViST--~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 438 ILLSATVPNTLEFADWIGRTKQKTIYVIST--SKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred EEEeccCCChHHHHHHhhhccCceEEEEec--CCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 9999999865432 222222222222211 11111111111000
Q ss_pred ------------------C--cc----------cc---HHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC----
Q 015093 261 ------------------D--KE----------EW---KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD---- 303 (413)
Q Consensus 261 ------------------~--~~----------~~---~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~---- 303 (413)
. .. .. .+..+...+.....-|+++||-|++.|+..++.|...+
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 0 00 00 12233333444444589999999999999999996431
Q ss_pred -----------------------------------CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 304 -----------------------------------HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 304 -----------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
-.+.++||++-+--++-++..|..|-++||+||.++++|+|+|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 247889999999999999999999999999999999999999866
Q ss_pred CEEEEcCC---------CCChhHHHhhhcccCCCCCc--ceEEEEeccc
Q 015093 349 SLVINYDL---------PTQPENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 349 ~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 386 (413)
.+|+. +. ...+.+|.||+||+||.|-+ |.+++++...
T Consensus 676 tvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 676 TVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 55553 22 24789999999999999864 7777776654
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-31 Score=222.58 Aligned_cols=200 Identities=53% Similarity=0.796 Sum_probs=180.3
Q ss_pred ccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc--cCceeEEEEcccHH
Q 015093 42 FDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE--SLQCQALVLAPTRE 119 (413)
Q Consensus 42 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~--~~~~~~lvl~P~~~ 119 (413)
|+++++++.+.+.+...++..|+++|.++++.+.+++++++++|||+|||+++++++++.+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6788999999999999999999999999999999999999999999999999999999888776 45679999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|+.|+.+.++++....+..+..+.|+............+++|+|+|++.+...+......+.+++++|+||+|.+.+..+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999988778888999998887666666666789999999999999988777778899999999999888888
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEE
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (413)
...+..+.+.++..++++++|||+++........++.+++.+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999998899999999999998888888888877654
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-31 Score=265.28 Aligned_cols=302 Identities=19% Similarity=0.232 Sum_probs=197.2
Q ss_pred CCcHHHHhhhhhhhC----C-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 62 KPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.||+||.+|++++.+ + +++++++|||||||.+++..+...+.. ....++||++|+.+|+.|+.+.+..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 699999999987753 3 569999999999999876555444333 3345999999999999999999988643222
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-----CCCCCCccEEEEccchhhhcc--------------
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIRMFVLDEADEMLSR-------------- 197 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~-------------- 197 (413)
.......+... ...........|+|+|+++|.+.+... ......+++||+||||+....
T Consensus 492 ~~~~~i~~i~~--L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKG--LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhh--hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111000 011112335789999999998765321 134567899999999996321
Q ss_pred -CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecC-----Cccc-------------cCCce----
Q 015093 198 -GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR-----DELT-------------LEGIK---- 254 (413)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------------~~~~~---- 254 (413)
.+...+.+++..+. ..++||||||..... .+++.++..+... +... ..++.
T Consensus 570 ~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 570 LDYVSKYRRVLDYFD--AVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred hhHHHHHHHHHhhcC--ccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 12356677777653 468999999974332 2333333211110 0000 00000
Q ss_pred -----------EEE-EEeCc----c----------ccHH----HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC--
Q 015093 255 -----------QFH-VNVDK----E----------EWKL----DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR-- 302 (413)
Q Consensus 255 -----------~~~-~~~~~----~----------~~~~----~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~-- 302 (413)
... ...+. . +... ..+...+.....+|+||||.++++|+.+++.|.+.
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 000 00000 0 0001 11122222223479999999999999999887653
Q ss_pred ----C---CeeEeecCCCCHHHHHHHHHHHhcCCC-eEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCC
Q 015093 303 ----D---HTVSATHGDMDQNSRDIIMREFRSGSS-RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 374 (413)
Q Consensus 303 ----~---~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 374 (413)
+ ..+..++|+.+ ++.++++.|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|.-
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 1 24556888875 46789999999887 58999999999999999999999999999999999999999964
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-31 Score=265.28 Aligned_cols=304 Identities=19% Similarity=0.263 Sum_probs=208.1
Q ss_pred HHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceEEEEECC
Q 015093 67 QQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVHACVGG 145 (413)
Q Consensus 67 Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~ 145 (413)
..+.+..+..++.++|+|+||||||......+++. ... ...++++.-|.+--+...++.+.+ ++...|..+++....
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~-~~~-~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~ 149 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL-GRG-SHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF 149 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc-CCC-CCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC
Confidence 35677777777889999999999998754444432 111 223677778888766666655543 333334444443222
Q ss_pred cchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCcHHH-HHHHHhhCCCCceEEEEeeeC
Q 015093 146 TSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGFKDQ-IYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 146 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~~-~~~~~~~~~~~~~~i~lSAT~ 223 (413)
... ......|.++|++.|+..+..... +..+++||+||+|+ ..+.++... +..++... ++.++|+||||+
T Consensus 150 ~~~------~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATl 221 (1283)
T TIGR01967 150 HDQ------VSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATI 221 (1283)
T ss_pred Ccc------cCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCc
Confidence 211 234578999999999998876543 67799999999995 666666544 45554444 478999999999
Q ss_pred ChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc-----ccHHHHHHHHHH---hcCCCcEEEEEcCcccHHHH
Q 015093 224 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE-----EWKLDTLCDLYE---TLAITQSVIFVNTRRKVDWL 295 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~---~~~~~~~lIf~~~~~~a~~l 295 (413)
.. ..+...+...++ +.+..... .+...+...... ......+...+. ....+.+|||+++..+++.+
T Consensus 222 d~--~~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l 295 (1283)
T TIGR01967 222 DP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDA 295 (1283)
T ss_pred CH--HHHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHH
Confidence 64 344444433443 33322221 122222222110 122233333222 12458999999999999999
Q ss_pred HHHHhhCC---CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC----------------
Q 015093 296 TDQMRSRD---HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL---------------- 356 (413)
Q Consensus 296 ~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------------- 356 (413)
++.|.+.+ ..+..+||+++..+|.++++.+ +..+||+||+++++|+|+|++++||+.+.
T Consensus 296 ~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~ 373 (1283)
T TIGR01967 296 AEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLP 373 (1283)
T ss_pred HHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccC
Confidence 99998764 4588899999999999886543 34689999999999999999999999874
Q ss_pred --CCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 357 --PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 357 --~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
+.|..++.||.||+||.+ +|.|+.+|++.+..
T Consensus 374 ~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 374 IEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred CccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 347789999999999997 89999999876543
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-30 Score=215.66 Aligned_cols=319 Identities=17% Similarity=0.180 Sum_probs=226.6
Q ss_pred CCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+|++.|+.+-..+. +.++.+|+|-||+|||......+-..+.. |.++.+.+|+...+.+.+.++++... +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~--~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFS--NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhc--cC
Confidence 78899998776654 46789999999999998865555555444 44999999999999999999988654 56
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+..++|+..... ..+++|+|.+.|++.... ++++|+||+|-+....-......+.......-..|
T Consensus 172 ~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchhc-------cccEEEEehHHHHHHHhh-------ccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 7778888776332 268999999998876554 78999999998764443444445555555566789
Q ss_pred EEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc----cccHH-HHHHHHHHhc--CCCcEEEEEcCcc
Q 015093 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK----EEWKL-DTLCDLYETL--AITQSVIFVNTRR 290 (413)
Q Consensus 218 ~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~l~~~~~~~--~~~~~lIf~~~~~ 290 (413)
++||||+..+...+...-.....+.-..-....+- ..+....+- ...++ ..+...+++. .+.+++||+++++
T Consensus 238 ylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpv-Pkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~ 316 (441)
T COG4098 238 YLTATPTKKLERKILKGNLRILKLPARFHGKPLPV-PKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIE 316 (441)
T ss_pred EEecCChHHHHHHhhhCCeeEeecchhhcCCCCCC-CceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchH
Confidence 99999987655433322111111111111111111 111111111 01112 2566666655 4479999999999
Q ss_pred cHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCC--CChhHHHhh
Q 015093 291 KVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQPENYLHR 366 (413)
Q Consensus 291 ~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~--~s~~~~~Q~ 366 (413)
.++.++..|++. ...+..+|+. +..|.+..+.|++|+.++||+|.++++|+.+|++++.|+-.-. .+.+.++|.
T Consensus 317 ~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQI 394 (441)
T COG4098 317 TMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQI 394 (441)
T ss_pred HHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHH
Confidence 999999999653 2345677776 3468899999999999999999999999999999998875433 788999999
Q ss_pred hcccCCCC--CcceEEEEeccccHHHHHHHHHHhcccc
Q 015093 367 IGRSGRFG--RKGVAINFVTRDDDRMLADIQRFYNVVI 402 (413)
Q Consensus 367 ~GR~~R~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (413)
.||+||.- ..|.+..|.......+.....+.-+...
T Consensus 395 aGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~MN~ 432 (441)
T COG4098 395 AGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKEMNK 432 (441)
T ss_pred hhhccCCCcCCCCcEEEEeccchHHHHHHHHHHHHHHH
Confidence 99999963 4689999888888888877765544433
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=251.10 Aligned_cols=317 Identities=20% Similarity=0.252 Sum_probs=240.8
Q ss_pred HHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 54 GIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 54 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.....+| +|.++|++++..+..+.+++|++|||+|||+++.+++...+..++ +++|++|.++|.+|.++++.....
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhh
Confidence 3344565 799999999999999999999999999999999999888776655 799999999999999988866443
Q ss_pred ccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCC
Q 015093 134 YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213 (413)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~ 213 (413)
.....+++++|+.+ +++++.++|+|.+.|.+++.+....+..+..||+||+|.+.+...+..|..++-.+|..
T Consensus 188 dv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 188 DVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 22345688888876 35668999999999999999998888889999999999999999999999999999999
Q ss_pred ceEEEEeeeCChhHHHHHHHhc---CCCEEEEecCCccccCCceEEEEEe-------Cccc-------------------
Q 015093 214 IQVGVFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFHVNV-------DKEE------------------- 264 (413)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------------------- 264 (413)
.++++||||.++.. ++..++. ..+..+... +..+..+.+++... +...
T Consensus 261 v~~v~LSATv~N~~-EF~~Wi~~~~~~~~~vv~t--~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 261 VRFVFLSATVPNAE-EFAEWIQRVHSQPIHVVST--EHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CcEEEEeCCCCCHH-HHHHHHHhccCCCeEEEee--cCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 99999999998643 3333222 334433322 22222222222111 0000
Q ss_pred ---------------------------cHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC---------------
Q 015093 265 ---------------------------WKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR--------------- 302 (413)
Q Consensus 265 ---------------------------~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~--------------- 302 (413)
.....+...+.....-++++|+-++..|+..+..+...
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~i 417 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREI 417 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHH
Confidence 00112333333344458999999999999888877521
Q ss_pred -------------CC-------------eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC-
Q 015093 303 -------------DH-------------TVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD- 355 (413)
Q Consensus 303 -------------~~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~- 355 (413)
+. .+.++|+++=+..+..+...|..|-++|+++|.+++.|+|+|.-++|+ ..
T Consensus 418 i~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l 496 (1041)
T COG4581 418 IDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSL 496 (1041)
T ss_pred HHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eee
Confidence 11 255889999999999999999999999999999999999998666554 22
Q ss_pred --------CCCChhHHHhhhcccCCCCCc--ceEEEEecc
Q 015093 356 --------LPTQPENYLHRIGRSGRFGRK--GVAINFVTR 385 (413)
Q Consensus 356 --------~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~ 385 (413)
...++.+|.|+.||+||.|.+ |.++++..+
T Consensus 497 ~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 497 SKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 245889999999999999975 777776443
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=244.75 Aligned_cols=317 Identities=18% Similarity=0.230 Sum_probs=230.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-.--.+..|+ +..++||+|||+++.+|++..+..+ ..++|++|+..|+.|.++.+..+...+++++.+
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 78888888777765555 9999999999999999998665543 369999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC-CCCC-----CCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ-SLRP-----DYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~-~~~~-----~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
+.|+......... -.++|+++||+.| +++++.. .+.+ ..+.++|+||+|.++ +..
T Consensus 157 i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~ 234 (896)
T PRK13104 157 IYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSE 234 (896)
T ss_pred EeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchH
Confidence 9999876555433 3589999999999 8888765 3333 468999999999754 210
Q ss_pred cHHHHHHHHhhCCC--------------C---------------------------------------------------
Q 015093 199 FKDQIYDIFQHLPG--------------K--------------------------------------------------- 213 (413)
Q Consensus 199 ~~~~~~~~~~~~~~--------------~--------------------------------------------------- 213 (413)
....+..+...+.. .
T Consensus 235 ~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~l 314 (896)
T PRK13104 235 LYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAM 314 (896)
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHH
Confidence 00000000000000 0
Q ss_pred -----------------------------------------------------------------ceEEEEeeeCChhHH
Q 015093 214 -----------------------------------------------------------------IQVGVFSATMPPEAL 228 (413)
Q Consensus 214 -----------------------------------------------------------------~~~i~lSAT~~~~~~ 228 (413)
.++-+||+|......
T Consensus 315 f~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~ 394 (896)
T PRK13104 315 FHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAY 394 (896)
T ss_pred hcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHH
Confidence 245566666654444
Q ss_pred HHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCee
Q 015093 229 EITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTV 306 (413)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~ 306 (413)
++...|....+.+.. ..+........ ..+.....+..++...+... .+.|+||||+|++.++.+++.|++.|+++
T Consensus 395 Ef~~iY~l~Vv~IPt-nkp~~R~d~~d--~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h 471 (896)
T PRK13104 395 EFQQIYNLEVVVIPT-NRSMIRKDEAD--LVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKH 471 (896)
T ss_pred HHHHHhCCCEEECCC-CCCcceecCCC--eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 443333333222222 11111111111 12223345666666555332 66799999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC--------------------------------------C
Q 015093 307 SATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ--------------------------------------V 348 (413)
Q Consensus 307 ~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--------------------------------------~ 348 (413)
..+|+++...++..+.+.|+.|. |+|||+++++|+|+.= =
T Consensus 472 ~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 549 (896)
T PRK13104 472 QVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGG 549 (896)
T ss_pred EeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCC
Confidence 99999999999999999999995 9999999999999851 2
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
-+||-...+.|...-.|..||+||.|.||.+.+|++-.|.-+
T Consensus 550 L~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 550 LRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 357777778888888999999999999999999999877544
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=248.19 Aligned_cols=338 Identities=19% Similarity=0.278 Sum_probs=241.1
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhccccc--------CceeEEEEcc
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYES--------LQCQALVLAP 116 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~--------~~~~~lvl~P 116 (413)
.++.+-..++. |..++.++|.....+.+.+ .++++|||||+|||..+++.+++.+.... ...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 34555555544 4456999999999998776 56999999999999999999999885432 1348999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEEEEccchhh
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVLDEADEM 194 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIiDE~h~~ 194 (413)
.++|++.|...+.+....++++|.-.+|+....... -...+|+++||+.+.-.-++.+- ..+.++++|+||+|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 999999999999999999999999999987633322 23579999999998654444221 1334789999999966
Q ss_pred hccCcHHHHHHHHhhC-------CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcc--cc
Q 015093 195 LSRGFKDQIYDIFQHL-------PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKE--EW 265 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~-------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 265 (413)
.+ +++..+..+..+. ...++++++|||+++... ....+..++.........+++-.+.+.+.-+... ..
T Consensus 450 hD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred cc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 43 3455554443332 237899999999986433 2222222233333333445555555544433221 11
Q ss_pred HH-----HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC-------------------------------------C
Q 015093 266 KL-----DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR-------------------------------------D 303 (413)
Q Consensus 266 ~~-----~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------------------~ 303 (413)
.. .....+++....+++|||+-|++++...++.++.. -
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 11 22334455556689999999999888888777621 2
Q ss_pred CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cCC------CCChhHHHhhhcccCCC
Q 015093 304 HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL------PTQPENYLHRIGRSGRF 373 (413)
Q Consensus 304 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~ 373 (413)
+....+|++|++.+|...++.|.+|+++|+++|..+++|+|+|.-.++|- +++ +.|+.+..||+||+||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 56889999999999999999999999999999999999999997666653 222 45889999999999997
Q ss_pred CC--cceEEEEeccccHHH
Q 015093 374 GR--KGVAINFVTRDDDRM 390 (413)
Q Consensus 374 g~--~g~~~~~~~~~~~~~ 390 (413)
+- .|..+++....+...
T Consensus 688 ~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred ccCcCCceeeccCchHhhh
Confidence 53 466776666655443
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=240.22 Aligned_cols=316 Identities=20% Similarity=0.256 Sum_probs=245.3
Q ss_pred HHHHHHHhCCCCCCcHHHHhhhhhhhC----C--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 50 NLLRGIYAYGFEKPSAIQQRGIVPFCK----G--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 50 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~----~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
+..+....++| +-|+-|..|++.+.+ + -|-+|||..|.|||.+++-+++.....+ +.+.|+|||.-|++|
T Consensus 583 ~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTTlLA~Q 658 (1139)
T COG1197 583 WQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTTLLAQQ 658 (1139)
T ss_pred HHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccHHhHHH
Confidence 33444445666 689999999998865 2 3689999999999999988887766554 599999999999999
Q ss_pred HHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 124 IEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
.++.++.....+++++..++.=.+.+.....+ .+..||+|+|.. +..+...+.+++++||||=|++.-..
T Consensus 659 Hy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-----LL~kdv~FkdLGLlIIDEEqRFGVk~- 732 (1139)
T COG1197 659 HYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-----LLSKDVKFKDLGLLIIDEEQRFGVKH- 732 (1139)
T ss_pred HHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-----hhCCCcEEecCCeEEEechhhcCccH-
Confidence 99999999999999999988766655554433 457899999944 44566677889999999999975432
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHH-HHHh-c
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD-LYET-L 277 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~ 277 (413)
. +-++.+..+.-++-|||||.|....+......+.-.+...+.. ...++.+....+. ..+.+ ++++ .
T Consensus 733 K----EkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~--R~pV~T~V~~~d~-----~~ireAI~REl~ 801 (1139)
T COG1197 733 K----EKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED--RLPVKTFVSEYDD-----LLIREAILRELL 801 (1139)
T ss_pred H----HHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC--CcceEEEEecCCh-----HHHHHHHHHHHh
Confidence 2 3445555677899999999988777766665554433333222 2233333333332 12222 2222 2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
.+|.+--.+|.++..+.+++.|++. ...+.+.||.|+..+-++++..|.+|+.+||+||.+.+.|+|+|+++++|+-+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 5688999999999999999999886 56789999999999999999999999999999999999999999999998765
Q ss_pred CC-CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 356 LP-TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 356 ~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.. +..+++-|.-||+||.++.++||+++.+.
T Consensus 882 AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 43 56789999999999999999999999864
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=237.45 Aligned_cols=316 Identities=19% Similarity=0.221 Sum_probs=236.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHH-HhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL-QQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~-~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.|++.|.-+.-.+..|+ +..+.||+|||+++.+|++ ..+ .+ ..+-|++|+..||.|.++.+..+...+++++.
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~G---~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~ 154 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-TG---KGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVG 154 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-cC---CCEEEEecCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 79999998887776665 9999999999999999986 444 32 25779999999999999999999999999999
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcCC------CCCCCccEEEEccchhhh-ccC--------------
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQS------LRPDYIRMFVLDEADEML-SRG-------------- 198 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~h~~~-~~~-------------- 198 (413)
++.++.+........ .++|+++|+..| +++++... .....+.++|+||+|.++ +..
T Consensus 155 ~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~ 232 (830)
T PRK12904 155 VILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSS 232 (830)
T ss_pred EEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCccc
Confidence 999988766655443 489999999999 77776543 235568899999999754 211
Q ss_pred -cHHHHHHHHhhCCCC----------------------------------------------------------------
Q 015093 199 -FKDQIYDIFQHLPGK---------------------------------------------------------------- 213 (413)
Q Consensus 199 -~~~~~~~~~~~~~~~---------------------------------------------------------------- 213 (413)
....+..+...+...
T Consensus 233 ~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg 312 (830)
T PRK12904 233 ELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDG 312 (830)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 011111111111000
Q ss_pred -----------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCEE
Q 015093 214 -----------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPVR 240 (413)
Q Consensus 214 -----------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~ 240 (413)
.++.+||+|......++...|....+.
T Consensus 313 ~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~ 392 (830)
T PRK12904 313 EVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVV 392 (830)
T ss_pred EEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEE
Confidence 367788888876555444444333333
Q ss_pred EEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHH
Q 015093 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSR 318 (413)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r 318 (413)
++. ..+......... .......+...+...+.. ..+.|+||||+|++.++.+++.|.+.++++..+|+. +.+|
T Consensus 393 IPt-nkp~~r~d~~d~--i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eR 467 (830)
T PRK12904 393 IPT-NRPMIRIDHPDL--IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHER 467 (830)
T ss_pred cCC-CCCeeeeeCCCe--EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHH
Confidence 322 222211111111 123345677788877755 466799999999999999999999999999999996 6789
Q ss_pred HHHHHHHhcCCCeEEEEeCccccCCCCCC--------------------------------------CCEEEEcCCCCCh
Q 015093 319 DIIMREFRSGSSRVLITTDLLARGIDVQQ--------------------------------------VSLVINYDLPTQP 360 (413)
Q Consensus 319 ~~~~~~f~~~~~~vli~t~~~~~G~d~~~--------------------------------------~~~vi~~~~~~s~ 360 (413)
+..+..|..+...|+|||+++++|+|++- =-+||....+.|.
T Consensus 468 Ea~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesr 547 (830)
T PRK12904 468 EAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESR 547 (830)
T ss_pred HHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchH
Confidence 99999999999999999999999999863 2357777788999
Q ss_pred hHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
.--.|..||+||.|.+|.+.+|++-.|.-+
T Consensus 548 Rid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 548 RIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred HHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 999999999999999999999999877544
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=239.01 Aligned_cols=317 Identities=18% Similarity=0.203 Sum_probs=229.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-+.-.+..|+ +..+.||+|||+++.++++.....+ ..+-+++|+.-||.|-++.+..+...+|+++++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G---~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~ 154 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG---KGVHVVTVNEYLSSRDATEMGELYRWLGLTVGL 154 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC---CCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEE
Confidence 79999998887776666 9999999999999988877665544 489999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
+.++......... -.++|+++|...|. +.++.. ......+.+.|+||+|.++ +..
T Consensus 155 i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~ 232 (796)
T PRK12906 155 NLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATD 232 (796)
T ss_pred eCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchH
Confidence 9987765544433 35799999998874 233321 1123457889999999643 110
Q ss_pred cHHHHHHHHhhCCC------------------------------------------------------------------
Q 015093 199 FKDQIYDIFQHLPG------------------------------------------------------------------ 212 (413)
Q Consensus 199 ~~~~~~~~~~~~~~------------------------------------------------------------------ 212 (413)
....+..+...+..
T Consensus 233 ~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~ 312 (796)
T PRK12906 233 LYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIML 312 (796)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHh
Confidence 00001111000000
Q ss_pred -C-------------------------------------------------------------ceEEEEeeeCChhHHHH
Q 015093 213 -K-------------------------------------------------------------IQVGVFSATMPPEALEI 230 (413)
Q Consensus 213 -~-------------------------------------------------------------~~~i~lSAT~~~~~~~~ 230 (413)
+ .++.|||+|......++
T Consensus 313 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef 392 (796)
T PRK12906 313 KDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEF 392 (796)
T ss_pred cCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHH
Confidence 0 36677888876554444
Q ss_pred HHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEe
Q 015093 231 TRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSA 308 (413)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~ 308 (413)
...| +-++...+...+........ ..+.....+...+...+... .+.|+||||++++.++.+++.|.+.++++..
T Consensus 393 ~~iY-~l~vv~IPtnkp~~r~d~~d--~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~ 469 (796)
T PRK12906 393 REIY-NMEVITIPTNRPVIRKDSPD--LLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAV 469 (796)
T ss_pred HHHh-CCCEEEcCCCCCeeeeeCCC--eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeE
Confidence 4433 33332222221111111111 11223345777777777543 6689999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC---CCC-----EEEEcCCCCChhHHHhhhcccCCCCCcceEE
Q 015093 309 THGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAI 380 (413)
Q Consensus 309 ~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~ 380 (413)
+|+++...++..+.+.++.|. |+|||+++++|.|++ .+. +||.+..|.|...+.|+.||+||.|.+|.+.
T Consensus 470 Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 470 LNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999998777777777776666 999999999999995 788 9999999999999999999999999999999
Q ss_pred EEeccccHHH
Q 015093 381 NFVTRDDDRM 390 (413)
Q Consensus 381 ~~~~~~~~~~ 390 (413)
++++..|.-+
T Consensus 548 ~~~sleD~l~ 557 (796)
T PRK12906 548 FYLSLEDDLM 557 (796)
T ss_pred EEEeccchHH
Confidence 9999886543
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=243.59 Aligned_cols=319 Identities=20% Similarity=0.221 Sum_probs=216.8
Q ss_pred CCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|++||..++..+. .|.++|+...+|.|||+.++..+...........++|||||. ++..+|.+++.+++. ..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--VL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--CC
Confidence 79999999998775 467799999999999998765554332223334479999996 667889999999986 45
Q ss_pred eEEEEECCcchHHHHH---HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 138 KVHACVGGTSVREDQR---ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~---~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
.+..++|......... ......+|+|+|++++...... +....+++||+||||++.+. .....+.+..+.. .
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a-~ 320 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFST-N 320 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHHhhc-C
Confidence 6666676544322211 1234678999999998754322 22234789999999998543 3445566666654 3
Q ss_pred eEEEEeeeCChh-HHHHH-----------------HHhcCCCEEE----------------EecC------CccccCCce
Q 015093 215 QVGVFSATMPPE-ALEIT-----------------RKFMNKPVRI----------------LVKR------DELTLEGIK 254 (413)
Q Consensus 215 ~~i~lSAT~~~~-~~~~~-----------------~~~~~~~~~~----------------~~~~------~~~~~~~~~ 254 (413)
..+++||||-.+ ..++. ..++...... .... ...++....
T Consensus 321 ~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~ 400 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKET 400 (1033)
T ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeE
Confidence 467899999521 11110 0000000000 0000 000000000
Q ss_pred EEEEE------------------------------------------------------------eCccccHHHHHHHHH
Q 015093 255 QFHVN------------------------------------------------------------VDKEEWKLDTLCDLY 274 (413)
Q Consensus 255 ~~~~~------------------------------------------------------------~~~~~~~~~~l~~~~ 274 (413)
.+... .-....+...+..++
T Consensus 401 iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 401 ILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 00000 000123455556666
Q ss_pred Hhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCC---CeEEEEeCccccCCCCCCCC
Q 015093 275 ETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS---SRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 275 ~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~d~~~~~ 349 (413)
... .+.++|||+........+.++|...++....++|+++..+|..+++.|++.. .-+|++|.+.+.|+|+..++
T Consensus 481 ~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad 560 (1033)
T PLN03142 481 PKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATAD 560 (1033)
T ss_pred HHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCC
Confidence 544 4569999999999999999999999999999999999999999999997632 35789999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcce--EEEEeccccH
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRDDD 388 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~~~~ 388 (413)
+||+++++|++....|++||+.|.|+... ++.+++....
T Consensus 561 ~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 561 IVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred EEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999999999999999999999998654 4455555543
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=234.94 Aligned_cols=311 Identities=17% Similarity=0.271 Sum_probs=222.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~ 140 (413)
.-+....+.+.++..+..++|.+|||||||......+++... ..+..+.+.=|.+--+...++.+.+ +....|..|+
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 445556667777778888999999999999887776766654 2344888999998666666555533 3333454555
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-hhccCcH-HHHHHHHhhCCCCceEEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE-MLSRGFK-DQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~-~~~~~~~~~~~~~~~~i~ 218 (413)
+.....+ .......|-++|.+.|++.+..... ++.+++||+||+|+ ..+.++. ..+..++...+.+.++|.
T Consensus 128 Y~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 128 YSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred EEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 5443222 1234578999999999999987765 66789999999998 3343333 445566777777899999
Q ss_pred EeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcccc-HHHHHHHH---HHhcCCCcEEEEEcCcccHHH
Q 015093 219 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEW-KLDTLCDL---YETLAITQSVIFVNTRRKVDW 294 (413)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~---~~~~~~~~~lIf~~~~~~a~~ 294 (413)
||||+... . +..++++...+.+....++ +...+........ ....+... ......|.+|||.+...+.+.
T Consensus 201 mSATld~~--r-fs~~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 201 MSATLDAE--R-FSAYFGNAPVIEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred EecccCHH--H-HHHHcCCCCEEEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 99999643 3 3445554333333322221 2222212221122 22333333 333456899999999999999
Q ss_pred HHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC--------------
Q 015093 295 LTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-------------- 356 (413)
Q Consensus 295 l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-------------- 356 (413)
+++.|.+ ....+..+||.++..++.++++.-..|+.+|+++|+++++++.+|+++.||+.+.
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~ 354 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTR 354 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCcee
Confidence 9999998 3578999999999999999888877887889999999999999999999998664
Q ss_pred ----CCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 357 ----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 357 ----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+.|..+..||.||+||.+ +|.|+-+|++.+.
T Consensus 355 L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 355 LETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred eeEEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 458889999999999984 8999999998543
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=220.76 Aligned_cols=309 Identities=16% Similarity=0.243 Sum_probs=217.7
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH-HHhhcccCceEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM-RALGDYMGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~-~~~~~~~~~~~~ 140 (413)
..+.+-.+.+..+.+++-++|.|+||||||......+.+.-.... + ++.+.-|++--+...+.+. .+.....|..|+
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~-g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASS-G-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccC-C-cEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 445556677888888888999999999999887655555433333 2 5888889887666655544 333333444454
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccC-cHHHHHHHHhhCCCCceEEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRG-FKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~-~~~~~~~~~~~~~~~~~~i~ 218 (413)
+...=.+ .......|.++|.+.|++.+...+. ++.+++||+||||+= ...+ ....+.++++.. ++.++|.
T Consensus 129 Y~IRFed------~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIi 200 (674)
T KOG0922|consen 129 YTIRFED------STSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLII 200 (674)
T ss_pred eEEEecc------cCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEE
Confidence 4432111 1123568999999999998887665 556899999999972 1111 223333444333 4689999
Q ss_pred EeeeCChhHHHHHHHhcCC-CEEEEecCCccccCCceEEEEEeCcc---ccHHHHHHHHHHhcCCCcEEEEEcCcccHHH
Q 015093 219 FSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNVDKE---EWKLDTLCDLYETLAITQSVIFVNTRRKVDW 294 (413)
Q Consensus 219 lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~ 294 (413)
+|||+. . +.+..|+.. ++. .+....+ .+..++...+.. ...+..+.++....+.+.+|||..+.++.+.
T Consensus 201 mSATld--a-~kfS~yF~~a~i~-~i~GR~f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 201 MSATLD--A-EKFSEYFNNAPIL-TIPGRTF---PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred Eeeeec--H-HHHHHHhcCCceE-eecCCCC---ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 999995 3 334455555 443 3322222 233334333332 2334445555556677899999999999999
Q ss_pred HHHHHhhC----C----CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC----------
Q 015093 295 LTDQMRSR----D----HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL---------- 356 (413)
Q Consensus 295 l~~~l~~~----~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------- 356 (413)
+++.|.+. . .-+..+||.++.+++.++.+.-..|..+|+++|+++++.+.++++..||+.+.
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 99999874 1 12467999999999999999888899999999999999999999999997653
Q ss_pred --------CCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 357 --------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 357 --------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
|.|..+-.||.||+||.| +|+|+.+|++.+.
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 568899999999999985 8999999998764
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=228.41 Aligned_cols=148 Identities=21% Similarity=0.305 Sum_probs=126.5
Q ss_pred cCCCCCHHHHHHHH-----hCCCCCC---cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 43 DSMGLKENLLRGIY-----AYGFEKP---SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 43 ~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
+.+.+..+..+.+. ..|+..| +|+|.++++.+..+++++..++||+|||++|++|++..+.... .++|+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 45667777777776 5788888 9999999999999999999999999999999999997665432 58999
Q ss_pred cccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcCCCCCC-------CccEE
Q 015093 115 APTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQSLRPD-------YIRMF 186 (413)
Q Consensus 115 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~~~~~-------~~~~i 186 (413)
+|++.|+.|..+.+..+...+++++..+.||.....+.... .++|+|+||+.| +++++...+.++ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999998877665443 589999999999 899888755554 35799
Q ss_pred EEccchhhh
Q 015093 187 VLDEADEML 195 (413)
Q Consensus 187 IiDE~h~~~ 195 (413)
|+||||.++
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999865
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=226.90 Aligned_cols=317 Identities=18% Similarity=0.233 Sum_probs=229.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-.--.+..|+ +..++||+|||+++.+|++.....+. .+.|++|+..|+.+-.+.+..+...+|+++.+
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 78888887776665554 99999999999999999876655443 69999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC-CCCC-----CCccEEEEccchhhhccC----------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ-SLRP-----DYIRMFVLDEADEMLSRG---------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~-~~~~-----~~~~~iIiDE~h~~~~~~---------------- 198 (413)
+.++.+... +...-.++|+++|++.| +++++.. .... ..+.++|+||+|.++-..
T Consensus 157 i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~ 234 (908)
T PRK13107 157 NVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSE 234 (908)
T ss_pred ecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchH
Confidence 998877533 23333689999999999 7777665 2222 557899999999754211
Q ss_pred -cH---H---H------------------------------------HHHHH---h------hC----------------
Q 015093 199 -FK---D---Q------------------------------------IYDIF---Q------HL---------------- 210 (413)
Q Consensus 199 -~~---~---~------------------------------------~~~~~---~------~~---------------- 210 (413)
|. . . +...+ . .+
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL 314 (908)
T PRK13107 235 LYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAAL 314 (908)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHH
Confidence 00 0 0 00111 0 00
Q ss_pred ------CCC-------------------------------------------------------------ceEEEEeeeC
Q 015093 211 ------PGK-------------------------------------------------------------IQVGVFSATM 223 (413)
Q Consensus 211 ------~~~-------------------------------------------------------------~~~i~lSAT~ 223 (413)
..+ .++.+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa 394 (908)
T PRK13107 315 RAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTA 394 (908)
T ss_pred HHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCC
Confidence 000 2566777776
Q ss_pred ChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhh
Q 015093 224 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRS 301 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~ 301 (413)
.....++...|....+.+..... .......... +.....+..++..-+... .+.++||||.|++.++.+++.|.+
T Consensus 395 ~te~~Ef~~iY~l~Vv~IPTnkp-~~R~d~~d~i--y~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~ 471 (908)
T PRK13107 395 DTEAFEFQHIYGLDTVVVPTNRP-MVRKDMADLV--YLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK 471 (908)
T ss_pred hHHHHHHHHHhCCCEEECCCCCC-ccceeCCCcE--EeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 65544444443333332222222 1111111111 222344555555544432 567999999999999999999999
Q ss_pred CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC-----------------------------------
Q 015093 302 RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ----------------------------------- 346 (413)
Q Consensus 302 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~----------------------------------- 346 (413)
.++++..+|++++..++..+.+.|+.|. |+|||+++++|.|+.
T Consensus 472 ~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 549 (908)
T PRK13107 472 EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVV 549 (908)
T ss_pred CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999988 999999999999986
Q ss_pred --CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 347 --QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 347 --~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+=-+||-...+.|..-=.|..||+||.|.||.+.+|++-.|.-+
T Consensus 550 ~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 550 AAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 22357777888888889999999999999999999999877643
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=217.73 Aligned_cols=295 Identities=18% Similarity=0.243 Sum_probs=198.0
Q ss_pred CCCcHHHHhhhhhhh----CCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 61 EKPSAIQQRGIVPFC----KGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~----~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
..||.||..|+..+. +|++ +|++|+||+|||.+++..+ ..|.+.+..+++|+++.+++|+.|.+..+..+.+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 379999999987654 4543 9999999999999986544 445444555699999999999999999988886542
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-----CCCCCCccEEEEccchhhhccCcHHHHHHHHhhC
Q 015093 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL 210 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 210 (413)
-.+..+.+... ..++.|.++|++++....... .+....+++||+||||+-.... +..++..+
T Consensus 243 -~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~----~~~I~dYF 309 (875)
T COG4096 243 -TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSE----WSSILDYF 309 (875)
T ss_pred -cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhh----hHHHHHHH
Confidence 22333332221 125799999999999887654 3445668999999999864333 33666666
Q ss_pred CCCceEEEEeeeCChhHHHHHHHhc-CCCEEEEecC-----CccccCCceEEEEEeC-----------------------
Q 015093 211 PGKIQVGVFSATMPPEALEITRKFM-NKPVRILVKR-----DELTLEGIKQFHVNVD----------------------- 261 (413)
Q Consensus 211 ~~~~~~i~lSAT~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------------------- 261 (413)
.. ..+++||||.......--.++ +.|...+.-. ....++.........+
T Consensus 310 dA--~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~d 387 (875)
T COG4096 310 DA--ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDED 387 (875)
T ss_pred HH--HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcc
Confidence 32 245569999765444444444 4443322211 0111111111111000
Q ss_pred -----------------ccccHHHHHHHHHHhc--C--CCcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCH
Q 015093 262 -----------------KEEWKLDTLCDLYETL--A--ITQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQ 315 (413)
Q Consensus 262 -----------------~~~~~~~~l~~~~~~~--~--~~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~ 315 (413)
..+.....+.+.++.. . .+|+||||.+..+|+.+.+.|.+. +--+..+.++...
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~ 467 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ 467 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh
Confidence 0111233444444442 1 469999999999999999999764 3346666666443
Q ss_pred HHHHHHHHHHhc-C-CCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC
Q 015093 316 NSRDIIMREFRS-G-SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 316 ~~r~~~~~~f~~-~-~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
-+..++.|.. . -.+|.|+++++.+|+|+|.+..+|++....|...|+||+||+-|.
T Consensus 468 --~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 468 --AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred --hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3444566654 2 346888889999999999999999999999999999999999995
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=218.34 Aligned_cols=336 Identities=17% Similarity=0.236 Sum_probs=236.1
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhh--hhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGI--VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~--~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.+....-.....|+..++.||.+.+ +.++.+++.+...||+.|||+++-+.++......+ ..++.+.|..+.+..-
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r--r~~llilp~vsiv~Ek 285 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR--RNVLLILPYVSIVQEK 285 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh--hceeEecceeehhHHH
Confidence 3344444455678889999999887 55778899999999999999999887776554432 3789999999999999
Q ss_pred HHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--CCCCCCCccEEEEccchhhhccCcHHH
Q 015093 125 EKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR--QSLRPDYIRMFVLDEADEMLSRGFKDQ 202 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~--~~~~~~~~~~iIiDE~h~~~~~~~~~~ 202 (413)
...+..+....|+.+....|........ ....+.|+|.++-...+.. ....+..+++||+||.|.+.+.+.+..
T Consensus 286 ~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~ 361 (1008)
T KOG0950|consen 286 ISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAI 361 (1008)
T ss_pred HhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchH
Confidence 9999999999999988887665533322 2357999999877654432 223456689999999999988887766
Q ss_pred HHHHHhhC-----CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeC----c-cccHH-----
Q 015093 203 IYDIFQHL-----PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVD----K-EEWKL----- 267 (413)
Q Consensus 203 ~~~~~~~~-----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~----- 267 (413)
+..++..+ ....++|+||||+++. . .+..++...+... .++|..+........ . ....+
T Consensus 362 lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~-lL~~~L~A~~y~t----~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~ 435 (1008)
T KOG0950|consen 362 LELLLAKILYENLETSVQIIGMSATIPNN-S-LLQDWLDAFVYTT----RFRPVPLKEYIKPGSLIYESSRNKVLREIAN 435 (1008)
T ss_pred HHHHHHHHHHhccccceeEeeeecccCCh-H-HHHHHhhhhheec----ccCcccchhccCCCcccccchhhHHHHHhhh
Confidence 65554433 2346799999999753 2 2222322111111 011111111111000 0 00001
Q ss_pred -----------HHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhC--------------------------------
Q 015093 268 -----------DTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSR-------------------------------- 302 (413)
Q Consensus 268 -----------~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------------- 302 (413)
+.+..+..+. .+..+||||++++.|+.++..+...
T Consensus 436 l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 436 LYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred hhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 1222222221 2235999999999999888666421
Q ss_pred ------CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC----CCCChhHHHhhhcccCC
Q 015093 303 ------DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD----LPTQPENYLHRIGRSGR 372 (413)
Q Consensus 303 ------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~----~~~s~~~~~Q~~GR~~R 372 (413)
...+.++|++++..+|+.+...|++|...|+.||+++..|+|+|..++++-+. ...+..+|.||+||+||
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR 595 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGR 595 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhh
Confidence 24588999999999999999999999999999999999999999988887432 34577899999999999
Q ss_pred CCC--cceEEEEeccccHHHHHHH
Q 015093 373 FGR--KGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 373 ~g~--~g~~~~~~~~~~~~~~~~~ 394 (413)
+|. .|.+++++...+......+
T Consensus 596 ~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 596 TGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred cccccCcceEEEeeccchhHHHHH
Confidence 986 4899999999988766543
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=189.38 Aligned_cols=164 Identities=27% Similarity=0.456 Sum_probs=139.4
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV 143 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 143 (413)
+|+|.++++.+.+++++++.+|||+|||++++.+++..+.+. ...++++++|+++|++|..+.+..+....+.++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 589999999999999999999999999999999999888766 4459999999999999999999999887778899999
Q ss_pred CCcchH-HHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC--CceEEEEe
Q 015093 144 GGTSVR-EDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG--KIQVGVFS 220 (413)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~--~~~~i~lS 220 (413)
++.... .........++|+|+||+.|...+........++++||+||+|.+....+...+..+.+.+.. +.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 888755 333444567899999999999999886556666999999999999887777788888777733 58999999
Q ss_pred eeCChhHH
Q 015093 221 ATMPPEAL 228 (413)
Q Consensus 221 AT~~~~~~ 228 (413)
||++.+.+
T Consensus 160 AT~~~~~~ 167 (169)
T PF00270_consen 160 ATLPSNVE 167 (169)
T ss_dssp SSSTHHHH
T ss_pred eCCChhHh
Confidence 99985443
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=219.07 Aligned_cols=298 Identities=16% Similarity=0.162 Sum_probs=182.3
Q ss_pred CCcHHHHhhhhhhhC----------CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFCK----------GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----------~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
-++++|..++..+.. .+..+++++||||||++++..+...+ .....+++||++|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 489999999977632 24699999999999999876665544 3334569999999999999999999987
Q ss_pred hcccCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcC--CCCCCC-ccEEEEccchhhhccCcHHHHHHHH
Q 015093 132 GDYMGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQ--SLRPDY-IRMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~--~~~~~~-~~~iIiDE~h~~~~~~~~~~~~~~~ 207 (413)
.... + .+..+.......+ .....|+|+|.++|...+... .+.... -.+||+||||+.....+. +.+
T Consensus 317 ~~~~---~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~----~~l 386 (667)
T TIGR00348 317 QKDC---A---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA----KNL 386 (667)
T ss_pred CCCC---C---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH----HHH
Confidence 5321 0 0111111222222 234689999999998644321 111111 138999999987544333 333
Q ss_pred -hhCCCCceEEEEeeeCChhHHHHHHHh----cCCCEEEEecCCccccCCc-eEEEEE-------eCc------------
Q 015093 208 -QHLPGKIQVGVFSATMPPEALEITRKF----MNKPVRILVKRDELTLEGI-KQFHVN-------VDK------------ 262 (413)
Q Consensus 208 -~~~~~~~~~i~lSAT~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~------------ 262 (413)
..++ +...+++||||........... ++..+....... +...+. ..+.+. .+.
T Consensus 387 ~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~-AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~ 464 (667)
T TIGR00348 387 KKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITD-AIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFE 464 (667)
T ss_pred HhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHH-HhhcCCeeeEEEEecchhhccChHHHHHHHHHHHH
Confidence 3444 5679999999963211111111 122222221111 111110 000000 000
Q ss_pred ------cc--------------------cHHHHHHH-HH----Hh--cCCCcEEEEEcCcccHHHHHHHHhhC-----CC
Q 015093 263 ------EE--------------------WKLDTLCD-LY----ET--LAITQSVIFVNTRRKVDWLTDQMRSR-----DH 304 (413)
Q Consensus 263 ------~~--------------------~~~~~l~~-~~----~~--~~~~~~lIf~~~~~~a~~l~~~l~~~-----~~ 304 (413)
.+ .....+.. ++ +. ...++.+|||.++.+|..+++.|.+. +.
T Consensus 465 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~ 544 (667)
T TIGR00348 465 LLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEA 544 (667)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCC
Confidence 00 00011111 11 11 12479999999999999999888654 23
Q ss_pred eeEeecCCCCHH---------------------HHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhH
Q 015093 305 TVSATHGDMDQN---------------------SRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPEN 362 (413)
Q Consensus 305 ~~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~ 362 (413)
....+++..+.. ....+++.|++ +..+|||+++++.+|+|.|.++++++..+..+. .
T Consensus 545 ~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~ 623 (667)
T TIGR00348 545 SAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-G 623 (667)
T ss_pred eeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-H
Confidence 445555543322 22467888876 678999999999999999999999988876654 5
Q ss_pred HHhhhcccCCC
Q 015093 363 YLHRIGRSGRF 373 (413)
Q Consensus 363 ~~Q~~GR~~R~ 373 (413)
++|++||+.|.
T Consensus 624 LlQai~R~nR~ 634 (667)
T TIGR00348 624 LLQAIARTNRI 634 (667)
T ss_pred HHHHHHHhccc
Confidence 89999999994
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=224.41 Aligned_cols=324 Identities=16% Similarity=0.192 Sum_probs=212.2
Q ss_pred CCcHHHHhhhhhhhCC---C-cEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 62 KPSAIQQRGIVPFCKG---L-DVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~---~-~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.+++.|..+++.+.+. . .+++.+|||+|||.+.+.++...+.. .....+++++.|++++.+++++.++.+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 5689999999887764 4 68899999999999999888877766 34566999999999999999999998765443
Q ss_pred ceEEEEECCcchHHHHHH--------------HhcCCcEEEeChHHHHHHH-HcCCCC-C--CCccEEEEccchhhhccC
Q 015093 137 VKVHACVGGTSVREDQRI--------------LSAGVHVVVGTPGRVFDML-RRQSLR-P--DYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~--------------~~~~~~Iii~T~~~l~~~~-~~~~~~-~--~~~~~iIiDE~h~~~~~~ 198 (413)
......++.......... ...-..++++|+....... ....+. + -..+++|+||+|.+....
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 333212332221111000 0001223344444333311 111111 0 114789999999876552
Q ss_pred cHHHHHHHHhhC-CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEe-CccccH--HHHHHHHH
Q 015093 199 FKDQIYDIFQHL-PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNV-DKEEWK--LDTLCDLY 274 (413)
Q Consensus 199 ~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~l~~~~ 274 (413)
....+..++... ..+.+++++|||+++.....+...+.....+..........+-....... ...... ........
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 434 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELIS 434 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcch
Confidence 333444443333 23678999999999998888888877766555432211100000000000 000001 01111112
Q ss_pred -HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHh----cCCCeEEEEeCccccCCCCCCCC
Q 015093 275 -ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFR----SGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 275 -~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
....+++++|.|||+..|..+++.|++.+.++..+||.+...+|.++++.+. .+...|+|+||+++.|+|+. .+
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd 513 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FD 513 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cC
Confidence 2235579999999999999999999998878999999999999998887654 46788999999999999994 66
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCC--CcceEEEEeccccH
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFG--RKGVAINFVTRDDD 388 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~ 388 (413)
.+| .-+....+++||+||++|.| ..|..+++......
T Consensus 514 ~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 514 VLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred eee--ecCCCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 655 33455899999999999999 56777777665533
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=210.45 Aligned_cols=312 Identities=15% Similarity=0.205 Sum_probs=214.6
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH-HHhhcccCc
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM-RALGDYMGV 137 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~-~~~~~~~~~ 137 (413)
+....+++-.+.+.++..++-++|.|.||||||......+.+.=..++ +.++-+.-|.+.-+...+.+. +.++..+|-
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~-gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKG-GKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccC-CceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 334678888899999999999999999999999886555554433333 335778888887766654443 333222222
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcHHHHHHHHhhCCCCceE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~~~~~~~~~~~~~ 216 (413)
.+++...- ..+.....-+-++|.++|++.+.... ++..+++||+||||+= +..+..-.+-+-+.+++++.++
T Consensus 341 eVGYsIRF------EdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKl 413 (902)
T KOG0923|consen 341 EVGYSIRF------EDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKL 413 (902)
T ss_pred ccceEEEe------ccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceE
Confidence 22222211 11122345678999999998776654 4667899999999972 2222222333334556678999
Q ss_pred EEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHH---HhcCCCcEEEEEcCcccHH
Q 015093 217 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY---ETLAITQSVIFVNTRRKVD 293 (413)
Q Consensus 217 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~lIf~~~~~~a~ 293 (413)
+..|||+. ...+...+-.-|++...... ..+..++...+.....-..+..++ ...+.+.+|||....++.+
T Consensus 414 lIsSAT~D--AekFS~fFDdapIF~iPGRR----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 414 LISSATMD--AEKFSAFFDDAPIFRIPGRR----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred EeeccccC--HHHHHHhccCCcEEeccCcc----cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 99999995 33333333334444333222 123334443443332223333333 3346689999999999988
Q ss_pred HHHHHHhhC---------CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC--------
Q 015093 294 WLTDQMRSR---------DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-------- 356 (413)
Q Consensus 294 ~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-------- 356 (413)
.+.+.|++. .+-+..+|+.++...+.++++.-..|-.+|++||+++++.+.++++..||.-+.
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynp 567 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNP 567 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCC
Confidence 888777653 345778999999999999999888999999999999999999999999997553
Q ss_pred ----------CCChhHHHhhhcccCCCCCcceEEEEecc
Q 015093 357 ----------PTQPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 357 ----------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
|.|..+..||.||+||.| +|+|+.+|+.
T Consensus 568 rtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 568 RTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred CcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 457888999999999986 8999999984
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=205.24 Aligned_cols=316 Identities=20% Similarity=0.205 Sum_probs=225.7
Q ss_pred CCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.+++||.+.++.+.+ |-++|+...+|-|||+..+..+..........+..||+||...|.+ |.+++++|++ ++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P--~l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTP--SL 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCC--Cc
Confidence 799999999988765 5679999999999998875444333222333458999999877655 8999999988 67
Q ss_pred eEEEEECCcchHHHH--HH-HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 138 KVHACVGGTSVREDQ--RI-LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~--~~-~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
++..++|+....... .. .....+|+|+|+++....- ..+..-+++++||||||++-+ ....+.++++.+....
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN--~~s~L~~~lr~f~~~n 319 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKN--EKSKLSKILREFKTDN 319 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcc--hhhHHHHHHHHhcccc
Confidence 888888887543322 11 2347899999999987542 122233479999999999955 4566668888887554
Q ss_pred eEEEEeeeCC-hhHHHH---------------------------------------------------------------
Q 015093 215 QVGVFSATMP-PEALEI--------------------------------------------------------------- 230 (413)
Q Consensus 215 ~~i~lSAT~~-~~~~~~--------------------------------------------------------------- 230 (413)
.+++|+||- +++-++
T Consensus 320 -rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 320 -RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred -eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 566999984 111000
Q ss_pred ------------------------------------------HHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHH
Q 015093 231 ------------------------------------------TRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLD 268 (413)
Q Consensus 231 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (413)
++.++..|+-+...... .+.... ..+-....+..
T Consensus 399 ~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~pyttd---ehLv~nSGKm~ 474 (971)
T KOG0385|consen 399 IIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PPYTTD---EHLVTNSGKML 474 (971)
T ss_pred eEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CCCCcc---hHHHhcCccee
Confidence 11222222211110000 000000 00011234566
Q ss_pred HHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCC---CeEEEEeCccccCC
Q 015093 269 TLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS---SRVLITTDLLARGI 343 (413)
Q Consensus 269 ~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~~~~G~ 343 (413)
.|..++... .+.++|||.+-....+-+-+++--+++....+.|.++..+|...++.|.... .-+|++|.+.+.|+
T Consensus 475 vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGI 554 (971)
T KOG0385|consen 475 VLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGI 554 (971)
T ss_pred hHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccc
Confidence 666666554 5579999999999999999999889999999999999999999999998754 34679999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEeccccHH
Q 015093 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDDR 389 (413)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~ 389 (413)
|+..+++||+++..|++..=.|+..||+|.|+. -.++.++++...+
T Consensus 555 NL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 555 NLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999999999999999999999975 5566777776554
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=206.10 Aligned_cols=330 Identities=21% Similarity=0.266 Sum_probs=223.0
Q ss_pred CCCcHHHHhhhhhhhCC----CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 61 EKPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~----~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..+.+-|..+++.+.+. ...++.+.||||||.+|+-++.+.+..++ .+|+++|-++|..|+.++++... +
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh---C
Confidence 46788899999998776 45999999999999999998888877654 89999999999999999998765 4
Q ss_pred ceEEEEECCcc----hHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-----CcHHHHHHHH
Q 015093 137 VKVHACVGGTS----VREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-----GFKDQIYDIF 207 (413)
Q Consensus 137 ~~~~~~~~~~~----~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-----~~~~~~~~~~ 207 (413)
.++..++++.+ ...|.+...+...|+|+|-..++ ..+.++++||+||=|..... .+...-..++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 56666666554 34555666678899999977765 34667899999999975422 2444444555
Q ss_pred hhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCcccc---HHHHHHHHHHhc--CCCcE
Q 015093 208 QHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEW---KLDTLCDLYETL--AITQS 282 (413)
Q Consensus 208 ~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~--~~~~~ 282 (413)
+....++++|+-||||+-+........-............+.++.+..+......... -...+.+.+++. .++++
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~ 423 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQV 423 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeE
Confidence 5555688999999999744433332211111222222222234444433333222111 113444444332 45678
Q ss_pred EEEEcCcccHHHH-HHHH-----------------------------------------------------------hhC
Q 015093 283 VIFVNTRRKVDWL-TDQM-----------------------------------------------------------RSR 302 (413)
Q Consensus 283 lIf~~~~~~a~~l-~~~l-----------------------------------------------------------~~~ 302 (413)
|+|.|.+-.+-.+ |..+ ++.
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~ 503 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL 503 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH
Confidence 8888877554222 2211 111
Q ss_pred --CCeeEeecCCCCH--HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC------------ChhHHHhh
Q 015093 303 --DHTVSATHGDMDQ--NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYLHR 366 (413)
Q Consensus 303 --~~~~~~~~~~~~~--~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~ 366 (413)
+.++..+.+++.. ..-+..+..|.+|+.+|||.|+++..|.|+|++..|..++... ....+.|-
T Consensus 504 FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qv 583 (730)
T COG1198 504 FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQV 583 (730)
T ss_pred CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHH
Confidence 2345555555543 2356789999999999999999999999999999987654421 33457899
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHHH-----HHHhccccc
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLADI-----QRFYNVVIE 403 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 403 (413)
.||+||++++|.+++-....+...+..+ ..|++..++
T Consensus 584 aGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~ 625 (730)
T COG1198 584 AGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELA 625 (730)
T ss_pred HhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999886655543 455555443
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=202.24 Aligned_cols=278 Identities=21% Similarity=0.301 Sum_probs=196.2
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC-ceE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG-VKV 139 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~-~~~ 139 (413)
..||..|+--...+.+|+++-+.||||.|||...++..+.. ..+ +.++++++||..|+.|..+.+++++...+ ..+
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~--a~k-gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~ 157 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL--AKK-GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDV 157 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH--Hhc-CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcce
Confidence 39999999999999999999999999999997654433322 222 35999999999999999999999987665 333
Q ss_pred EE-EECCcchHH----HHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-----------cH---
Q 015093 140 HA-CVGGTSVRE----DQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-----------FK--- 200 (413)
Q Consensus 140 ~~-~~~~~~~~~----~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----------~~--- 200 (413)
.. .++...... ..+...++.+|+|+|.+-|...+..-.- -++++|++|++|.++..+ +.
T Consensus 158 ~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~ 235 (1187)
T COG1110 158 LVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEV 235 (1187)
T ss_pred eeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHH
Confidence 33 444433222 2334456899999998888766654221 347899999999765322 00
Q ss_pred --------------------HHHHHHHhh--------CCCCceEEEEeeeCChhH--HHHHHHhcCCCEEEEecCCcccc
Q 015093 201 --------------------DQIYDIFQH--------LPGKIQVGVFSATMPPEA--LEITRKFMNKPVRILVKRDELTL 250 (413)
Q Consensus 201 --------------------~~~~~~~~~--------~~~~~~~i~lSAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 250 (413)
..+.+..+. -.+.-.++..|||..+.- ..+.+.+++..+ .......
T Consensus 236 i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev----G~~~~~L 311 (1187)
T COG1110 236 IESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV----GSGGEGL 311 (1187)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc----Cccchhh
Confidence 011111111 112346888999986533 334455554332 2222233
Q ss_pred CCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcC---cccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc
Q 015093 251 EGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNT---RRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS 327 (413)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~---~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
.++...+... .....+.++++.... -+|||++. ++.+++++++|+..|+++..+|+. ..+.++.|..
T Consensus 312 RNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~ 381 (1187)
T COG1110 312 RNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE 381 (1187)
T ss_pred hheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc
Confidence 3444444433 456667777777654 58999999 899999999999999999999985 3778999999
Q ss_pred CCCeEEEEeC----ccccCCCCCC-CCEEEEcCCC
Q 015093 328 GSSRVLITTD----LLARGIDVQQ-VSLVINYDLP 357 (413)
Q Consensus 328 ~~~~vli~t~----~~~~G~d~~~-~~~vi~~~~~ 357 (413)
|+.++||++. .+-+|+|+|. ++.+|+++.|
T Consensus 382 GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 382 GEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred CceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9999998864 7889999995 8999998876
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=204.37 Aligned_cols=308 Identities=17% Similarity=0.218 Sum_probs=204.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKV 139 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~ 139 (413)
......+.+.+..+..++-++|++.||||||......+++.=... .+-+-+.-|.+.-+...+....+ +...+|..|
T Consensus 355 LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~--~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V 432 (1042)
T KOG0924|consen 355 LPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD--NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTV 432 (1042)
T ss_pred cchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc--CCeeeecCchHHHHHHHHHHHHHHhCCcccccc
Confidence 355567778888888888899999999999987644443321111 22455566777766665554432 322223333
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcHHHHHHHHhhCCCCceEEE
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
++...=. ........|-++|.+.|++...... .+..+++||+||||+= ++.+..-.+.+..-.-+.+.++|.
T Consensus 433 GYsIRFE------dvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliV 505 (1042)
T KOG0924|consen 433 GYSIRFE------DVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIV 505 (1042)
T ss_pred ceEEEee------ecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEE
Confidence 3322111 1112345788999999987654433 3556899999999973 233322222222223334889999
Q ss_pred EeeeCChhHHHHHHHhcC-CCEEEEecCCccccCCceEEEEEeCccccHH----HHHHHHHHhcCCCcEEEEEcCcccHH
Q 015093 219 FSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFHVNVDKEEWKL----DTLCDLYETLAITQSVIFVNTRRKVD 293 (413)
Q Consensus 219 lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~lIf~~~~~~a~ 293 (413)
+|||+. ...+. .+++ -|......+. + .+...+...+. ++.+ .....+......|.+|||....+..+
T Consensus 506 tSATm~--a~kf~-nfFgn~p~f~IpGRT-y---PV~~~~~k~p~-eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE 577 (1042)
T KOG0924|consen 506 TSATMD--AQKFS-NFFGNCPQFTIPGRT-Y---PVEIMYTKTPV-EDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIE 577 (1042)
T ss_pred eecccc--HHHHH-HHhCCCceeeecCCc-c---ceEEEeccCch-HHHHHHHHhhheEeeccCCCCCEEEecCCCcchh
Confidence 999995 33333 4444 4443333222 1 12222222222 2232 22333333446688999999999888
Q ss_pred HHHHHHhhC----------CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC-------
Q 015093 294 WLTDQMRSR----------DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------- 356 (413)
Q Consensus 294 ~l~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------- 356 (413)
..+..++.+ ++.+..+++.++..-+.++++....|..+++|+|+++++.+.+|++.+||..+.
T Consensus 578 ~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn 657 (1042)
T KOG0924|consen 578 CTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYN 657 (1042)
T ss_pred HHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecc
Confidence 777776542 678999999999999999999888999999999999999999999999998664
Q ss_pred -----------CCChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 357 -----------PTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 357 -----------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
|.|...-.||.||+||.| +|.||.+|++.
T Consensus 658 ~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 658 PRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 568888999999999986 89999999984
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=202.63 Aligned_cols=333 Identities=14% Similarity=0.155 Sum_probs=205.0
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhh----hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~----~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
+++.+.+.+...|+ ++|+.|.+.++ .+.+++++++.||||+|||++|++|++.... .+.+++|.|||++|..
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~ 306 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQS 306 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHH
Confidence 34467777777887 48999997655 5566888999999999999999999987655 2348999999999999
Q ss_pred HHHH-HHHHhhcccC--ceEEEEECCcchH--------------------------------------------------
Q 015093 123 QIEK-VMRALGDYMG--VKVHACVGGTSVR-------------------------------------------------- 149 (413)
Q Consensus 123 q~~~-~~~~~~~~~~--~~~~~~~~~~~~~-------------------------------------------------- 149 (413)
|+.. ++..+....+ +++..+.|..++-
T Consensus 307 Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~ 386 (850)
T TIGR01407 307 QLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFF 386 (850)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhH
Confidence 9855 5555443333 5555555433210
Q ss_pred ---------------------HHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-------c--
Q 015093 150 ---------------------EDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-------F-- 199 (413)
Q Consensus 150 ---------------------~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-------~-- 199 (413)
...+.....++|+|+++..|+..+......+...+++|+||||++.+.. .
T Consensus 387 ~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~ 466 (850)
T TIGR01407 387 AQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDY 466 (850)
T ss_pred HHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCH
Confidence 0000112346899999999988775443333445899999999875310 0
Q ss_pred ---HHH----------------------------------------------------------------HHHHHhh---
Q 015093 200 ---KDQ----------------------------------------------------------------IYDIFQH--- 209 (413)
Q Consensus 200 ---~~~----------------------------------------------------------------~~~~~~~--- 209 (413)
... +...+..
T Consensus 467 ~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 546 (850)
T TIGR01407 467 ADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKD 546 (850)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 000 0000000
Q ss_pred ------------------C---------------------------CCCceEEEEeeeCChh-HHHHHHHhcCCC-EE-E
Q 015093 210 ------------------L---------------------------PGKIQVGVFSATMPPE-ALEITRKFMNKP-VR-I 241 (413)
Q Consensus 210 ------------------~---------------------------~~~~~~i~lSAT~~~~-~~~~~~~~~~~~-~~-~ 241 (413)
. +....+|++|||+... ..+.....++-. .. .
T Consensus 547 ~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~ 626 (850)
T TIGR01407 547 DFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFN 626 (850)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccc
Confidence 0 0124688999998732 233444334422 11 1
Q ss_pred EecCCccccCCceEEEEE--eC-----ccccHHHHHHHHHH---hcCCCcEEEEEcCcccHHHHHHHHhh----CCCeeE
Q 015093 242 LVKRDELTLEGIKQFHVN--VD-----KEEWKLDTLCDLYE---TLAITQSVIFVNTRRKVDWLTDQMRS----RDHTVS 307 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~~~---~~~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~ 307 (413)
......+....-...+.. .+ ..+.....+...+. ....+++|||++|.+.++.+++.|.. .++.
T Consensus 627 ~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~-- 704 (850)
T TIGR01407 627 TIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE-- 704 (850)
T ss_pred eecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--
Confidence 111111111111112211 11 11122222332222 22457999999999999999999975 2333
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC--EEEEcCCCCC--------------------------
Q 015093 308 ATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS--LVINYDLPTQ-------------------------- 359 (413)
Q Consensus 308 ~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~--~vi~~~~~~s-------------------------- 359 (413)
.+..+.. ..|.++++.|++++..||++|+.+.+|+|+|+.. .||+.+.|..
T Consensus 705 ~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~ 783 (850)
T TIGR01407 705 VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYV 783 (850)
T ss_pred EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhh
Confidence 2333332 4688899999999999999999999999999754 5677776631
Q ss_pred ----hhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 360 ----PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 360 ----~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
...+.|.+||+-|...+.-++++++..
T Consensus 784 lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 784 LPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 133589999999987655455555543
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=191.42 Aligned_cols=315 Identities=18% Similarity=0.197 Sum_probs=219.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-+.-.+..|+ +..+.||+|||+++.++++..... +..+.+++|+.-|+.|-++.+..+...+|+++.+
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~ 152 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEALGLTVGW 152 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 79999999998888776 889999999999998888765444 3489999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-ccC--------------c
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG--------------F 199 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~--------------~ 199 (413)
+.++.......... .++|+++|...|- +.++.. ......+.+.|+||+|.++ +.. .
T Consensus 153 i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~ 230 (764)
T PRK12326 153 ITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAP 230 (764)
T ss_pred ECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhH
Confidence 98887755444333 5899999988763 222221 1223447899999999643 110 0
Q ss_pred HHHHHHHHhhCCC---------------------------------------------------------C---------
Q 015093 200 KDQIYDIFQHLPG---------------------------------------------------------K--------- 213 (413)
Q Consensus 200 ~~~~~~~~~~~~~---------------------------------------------------------~--------- 213 (413)
...+..+...+.. +
T Consensus 231 y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dge 310 (764)
T PRK12326 231 RGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGK 310 (764)
T ss_pred HHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 0001111111100 0
Q ss_pred ----------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCEEE
Q 015093 214 ----------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 214 ----------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (413)
.++.+||+|......++...|....+ .
T Consensus 311 V~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv-~ 389 (764)
T PRK12326 311 VHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVS-V 389 (764)
T ss_pred EEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEE-E
Confidence 36778888886655554444443333 2
Q ss_pred EecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHH
Q 015093 242 LVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD 319 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~ 319 (413)
.+...+........ ..+.....+..++..-+... .+.|+||.+.|++..+.+++.|.+.++++.++++.....| .
T Consensus 390 IPtnkp~~R~d~~d--~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A 466 (764)
T PRK12326 390 IPPNKPNIREDEAD--RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-A 466 (764)
T ss_pred CCCCCCceeecCCC--ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-H
Confidence 22222211111111 11222345665555544332 6679999999999999999999999999999998855433 3
Q ss_pred HHHHHHhcCC-CeEEEEeCccccCCCCC---------------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEe
Q 015093 320 IIMREFRSGS-SRVLITTDLLARGIDVQ---------------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 383 (413)
Q Consensus 320 ~~~~~f~~~~-~~vli~t~~~~~G~d~~---------------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 383 (413)
+++. +.|+ ..|.|||+++++|.|+. +=-+||....+.|...-.|..||+||.|.+|.+.+|+
T Consensus 467 ~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l 544 (764)
T PRK12326 467 RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV 544 (764)
T ss_pred HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE
Confidence 3333 3343 45889999999999985 2346788888899999999999999999999999999
Q ss_pred ccccHH
Q 015093 384 TRDDDR 389 (413)
Q Consensus 384 ~~~~~~ 389 (413)
+-.|.-
T Consensus 545 SleDdl 550 (764)
T PRK12326 545 SLEDDV 550 (764)
T ss_pred EcchhH
Confidence 977643
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=194.43 Aligned_cols=313 Identities=17% Similarity=0.168 Sum_probs=210.6
Q ss_pred CCcHHHHhhhhhhhCC---CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 62 KPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
.+||||.+++..+.-+ ++.+|+.|||+|||++.+-++... +.++||+|.+..-+.||...+..|...-+..
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 7999999999988764 569999999999998875444322 3489999999999999999999998766777
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--------CCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR--------QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL 210 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~--------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 210 (413)
+..++.+... ....++.|+|+|+.++...-.+ .-+..+.++++++||+|-+.+..|...+.-+...+
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc 450 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC 450 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh
Confidence 7777765431 2345789999999988532211 11223458999999999887766665555544444
Q ss_pred CCCceEEEEeeeCChhHHHHHHHhc--C-------------CCE--EEEec--CCccc--------cCCc--eEEEEEeC
Q 015093 211 PGKIQVGVFSATMPPEALEITRKFM--N-------------KPV--RILVK--RDELT--------LEGI--KQFHVNVD 261 (413)
Q Consensus 211 ~~~~~~i~lSAT~~~~~~~~~~~~~--~-------------~~~--~~~~~--~~~~~--------~~~~--~~~~~~~~ 261 (413)
.+++|||+-.+...+....+ + ... .+... .-... .... +......+
T Consensus 451 -----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMN 525 (776)
T KOG1123|consen 451 -----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMN 525 (776)
T ss_pred -----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecC
Confidence 47899998643322211110 0 000 00000 00000 0000 00111111
Q ss_pred cc-ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCcc
Q 015093 262 KE-EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLL 339 (413)
Q Consensus 262 ~~-~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~ 339 (413)
.. -.....|....++ .+.|+|||..+.-....++-.|.+ .+++|.+++.+|-++++.|+. ..++.++.+.+.
T Consensus 526 P~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 526 PNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred cchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 11 1123334444444 667999999887766666665533 568899999999999999984 568889999999
Q ss_pred ccCCCCCCCCEEEEcCCC-CChhHHHhhhcccCCCCC---c---ceEEEEeccccHHHHHHHHH
Q 015093 340 ARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGR---K---GVAINFVTRDDDRMLADIQR 396 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~---~---g~~~~~~~~~~~~~~~~~~~ 396 (413)
...+|+|..+++|..+.- -|..+-.||.||+.|+.+ + ...+.+++....++.++-++
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKR 663 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKR 663 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhh
Confidence 999999999999987653 467788999999999753 2 45677777777787776543
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=201.86 Aligned_cols=330 Identities=18% Similarity=0.218 Sum_probs=233.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
.++...+.+....-..-+..+...++++.+++.++|.|.||+|||......+++.....+...++++.-|++--|...++
T Consensus 158 ~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAe 237 (924)
T KOG0920|consen 158 KSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAE 237 (924)
T ss_pred hhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHH
Confidence 33444444444444467888999999999999999999999999999988888876555567789999999866666666
Q ss_pred HHH-HhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcHHHHH
Q 015093 127 VMR-ALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFKDQIY 204 (413)
Q Consensus 127 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~ 204 (413)
++. +.+...+..|++..+..... .....+.++|.+.|++.+... -.+..+..||+||+|+= .+.++...+.
T Consensus 238 RVa~ER~~~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~l 310 (924)
T KOG0920|consen 238 RVAKERGESLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILL 310 (924)
T ss_pred HHHHHhccccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHH
Confidence 553 33444455665555443321 223689999999999998873 34666899999999973 3455666655
Q ss_pred HHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccc----------------cCCceEEEEEeC-------
Q 015093 205 DIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT----------------LEGIKQFHVNVD------- 261 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~------- 261 (413)
+.+-...+..++|+||||.. .+....|++....+.+....++ .....+......
T Consensus 311 k~lL~~~p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (924)
T KOG0920|consen 311 KDLLPRNPDLKVILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLAR 387 (924)
T ss_pred HHHhhhCCCceEEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccccc
Confidence 66656667899999999996 3344555554433333221110 000000000000
Q ss_pred ----ccccHHHHHHHHH----HhcCCCcEEEEEcCcccHHHHHHHHhhC-------CCeeEeecCCCCHHHHHHHHHHHh
Q 015093 262 ----KEEWKLDTLCDLY----ETLAITQSVIFVNTRRKVDWLTDQMRSR-------DHTVSATHGDMDQNSRDIIMREFR 326 (413)
Q Consensus 262 ----~~~~~~~~l~~~~----~~~~~~~~lIf~~~~~~a~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~ 326 (413)
..+.....+..++ .....|.+|||.|+..+...+++.|... .+-+..+|+.++..+++.+...--
T Consensus 388 ~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp 467 (924)
T KOG0920|consen 388 LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPP 467 (924)
T ss_pred chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCC
Confidence 0012233333333 2334678999999999999999999642 256788999999999999999888
Q ss_pred cCCCeEEEEeCccccCCCCCCCCEEEEcCCC------------------CChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 327 SGSSRVLITTDLLARGIDVQQVSLVINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 327 ~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
.|..+|+++|++++.+|.++++-.||+.+.. .|.....||.||+||. ++|.||-+++...
T Consensus 468 ~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 468 KGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred CCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999999999999999999976542 3667789999999997 7899999998753
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=201.44 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=110.4
Q ss_pred ccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccc
Q 015093 264 EWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLAR 341 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 341 (413)
..+...+...+... .+.++||||+|++.++.+++.|.+.++++..+|+ .+.+|+..+..|..+...|+|||+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 45777888877554 6679999999999999999999999999999997 4778899999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 342 GIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 342 G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
|+|++ .+. +||....|.|...+.|+.||+||.|.+|.+.+|++..|.-+
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 99999 443 34788889999999999999999999999999999877643
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-24 Score=187.27 Aligned_cols=327 Identities=16% Similarity=0.203 Sum_probs=225.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
.++|.+.++++...+.+++..-...+.++.+..+.+..++-++++|.||||||.....+.++...... ..+...-|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCchH
Confidence 79999999999999999998877888889999999989999999999999999887666665544333 2455666776
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh--hhc
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE--MLS 196 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~--~~~ 196 (413)
.-+.+.+. +.+..+++..+.-.|......+ +.....-.-++|.++|++....... +..+++||+||||+ +..
T Consensus 102 vaamsva~---RVadEMDv~lG~EVGysIrfEd--C~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlAT 175 (699)
T KOG0925|consen 102 VAAMSVAQ---RVADEMDVTLGEEVGYSIRFED--CTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLAT 175 (699)
T ss_pred HHHHHHHH---HHHHHhccccchhccccccccc--cCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHHH
Confidence 66655444 3444455554444443321111 1111223447788888877666554 45589999999997 222
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc---cccHHHHHHHH
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK---EEWKLDTLCDL 273 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~ 273 (413)
......+..+....+ +.++|.+|||... ..++.|+++...+.+.. ..+ ...++..... .+..+..+.++
T Consensus 176 DiLmGllk~v~~~rp-dLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg--~~P--vEi~Yt~e~erDylEaairtV~qi 247 (699)
T KOG0925|consen 176 DILMGLLKEVVRNRP-DLKLVVMSATLDA---EKFQRYFGNAPLLAVPG--THP--VEIFYTPEPERDYLEAAIRTVLQI 247 (699)
T ss_pred HHHHHHHHHHHhhCC-CceEEEeecccch---HHHHHHhCCCCeeecCC--CCc--eEEEecCCCChhHHHHHHHHHHHH
Confidence 223445556666664 8999999999842 34556666655444433 222 2223332222 23445566666
Q ss_pred HHhcCCCcEEEEEcCcccHHHHHHHHhhC---------CCeeEeecCCCCHHHHHHHHHHHhc---C--CCeEEEEeCcc
Q 015093 274 YETLAITQSVIFVNTRRKVDWLTDQMRSR---------DHTVSATHGDMDQNSRDIIMREFRS---G--SSRVLITTDLL 339 (413)
Q Consensus 274 ~~~~~~~~~lIf~~~~~~a~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~---~--~~~vli~t~~~ 339 (413)
......|.+|+|..+.++.+..++.+... ...+..++ +.++..+.+.... | ..+|+|+|+++
T Consensus 248 h~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstnia 323 (699)
T KOG0925|consen 248 HMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIA 323 (699)
T ss_pred HhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecch
Confidence 66667899999999999999999988743 23566666 4444444433321 2 35799999999
Q ss_pred ccCCCCCCCCEEEEcCC------------------CCChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 340 ARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
+..+.++.+.+||..+. |.|..+-.||.||+||. ++|+|+.+|++.
T Consensus 324 etsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 324 ETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred heeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999997553 67889999999999997 799999999875
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=187.51 Aligned_cols=320 Identities=17% Similarity=0.192 Sum_probs=217.7
Q ss_pred CCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|.+||++.++.+.+ +...|+-..+|-|||...+..+......+....++|||||. .+..||..++.+|....
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~-- 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPF-- 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcce--
Confidence 678999999988765 45689999999999987654444333332444689999996 77889999999998744
Q ss_pred eEEEEECCcch---------HHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHH
Q 015093 138 KVHACVGGTSV---------REDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 138 ~~~~~~~~~~~---------~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
++.++++.... ..... .......|+++|++.|. +....+....++++|+||.|.+-+++ ..+.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrNpn--s~is 357 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRNPN--SKIS 357 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccCCc--cHHH
Confidence 56666654431 11111 11234579999999875 33334444558999999999997665 4445
Q ss_pred HHHhhCCCCceEEEEeeeCC-hhHHHHHH-----------------HhcCCC----------------------------
Q 015093 205 DIFQHLPGKIQVGVFSATMP-PEALEITR-----------------KFMNKP---------------------------- 238 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~-~~~~~~~~-----------------~~~~~~---------------------------- 238 (413)
..+..++. .+.|.+|+||. +++.++.. ..+..|
T Consensus 358 lackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 55556654 44566899984 11111100 000000
Q ss_pred ----------------------EEEEecCC----------------------cc--------------ccCCceEE--EE
Q 015093 239 ----------------------VRILVKRD----------------------EL--------------TLEGIKQF--HV 258 (413)
Q Consensus 239 ----------------------~~~~~~~~----------------------~~--------------~~~~~~~~--~~ 258 (413)
..+...-. .. +|.-.... ..
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 00000000 00 00000000 00
Q ss_pred -------EeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHh-hCCCeeEeecCCCCHHHHHHHHHHHhcC
Q 015093 259 -------NVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMR-SRDHTVSATHGDMDQNSRDIIMREFRSG 328 (413)
Q Consensus 259 -------~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 328 (413)
-......+...+..+++.+ .+.++|+|..++....-+-..|. ..++....+.|.++...|..+++.|+++
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~ 596 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED 596 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC
Confidence 0011134677777777665 45699999999999998888888 5899999999999999999999999977
Q ss_pred CC-e-EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc--eEEEEeccccHH
Q 015093 329 SS-R-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRDDDR 389 (413)
Q Consensus 329 ~~-~-vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~ 389 (413)
.. . +|++|.+.+.|+|+.+++-||+++|.|+++.=.|.--|+.|.|+.. .+|.+++....+
T Consensus 597 ~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 597 ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred CceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 64 3 5688899999999999999999999999999999999999999764 456667776554
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=193.64 Aligned_cols=316 Identities=18% Similarity=0.223 Sum_probs=217.3
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|+++|.-.--.+..|+ +..+.||+|||+++.++++..... +..+.+++|+..||.+-++.+..+...+|+++.+
T Consensus 82 ~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 82 RHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred CcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 78889987776665554 999999999999998888655444 3489999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
+.++.......... .++|+++|...| ++.++.. ......+.++|+||+|.++ +..
T Consensus 157 i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~ 234 (913)
T PRK13103 157 VTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSK 234 (913)
T ss_pred ECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccchH
Confidence 98887655544443 389999999887 2333221 1123568899999999753 110
Q ss_pred -cH------H------------------------------------HHHHHH---------hhC----------------
Q 015093 199 -FK------D------------------------------------QIYDIF---------QHL---------------- 210 (413)
Q Consensus 199 -~~------~------------------------------------~~~~~~---------~~~---------------- 210 (413)
+. . .+...+ ..+
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL 314 (913)
T PRK13103 235 LYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGL 314 (913)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHH
Confidence 00 0 000101 000
Q ss_pred ------CCC-------------------------------------------------------------ceEEEEeeeC
Q 015093 211 ------PGK-------------------------------------------------------------IQVGVFSATM 223 (413)
Q Consensus 211 ------~~~-------------------------------------------------------------~~~i~lSAT~ 223 (413)
..+ .++.+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa 394 (913)
T PRK13103 315 RAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTA 394 (913)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCC
Confidence 000 3566777777
Q ss_pred ChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhh
Q 015093 224 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRS 301 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~ 301 (413)
.....++...|....+.+.. ..+.......... +.....++.++..-+... .+.|+||-+.|++..+.+++.|++
T Consensus 395 ~te~~Ef~~iY~l~Vv~IPT-nkP~~R~D~~d~v--y~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~ 471 (913)
T PRK13103 395 DTEAFEFRQIYGLDVVVIPP-NKPLARKDFNDLV--YLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKK 471 (913)
T ss_pred HHHHHHHHHHhCCCEEECCC-CCCcccccCCCeE--EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 65554444444333333222 2222222222111 233345666666555433 567999999999999999999999
Q ss_pred CCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEEEEeCccccCCCCC----------------------------------
Q 015093 302 RDHTVSATHGDMDQNSRDIIMREFRSG-SSRVLITTDLLARGIDVQ---------------------------------- 346 (413)
Q Consensus 302 ~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~G~d~~---------------------------------- 346 (413)
.++++.+++......|.+.+ . +.| ...|.|||+++++|.|+.
T Consensus 472 ~gi~h~VLNAk~~~~EA~II-a--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V 548 (913)
T PRK13103 472 EGIEHKVLNAKYHEKEAEII-A--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQV 548 (913)
T ss_pred cCCcHHHhccccchhHHHHH-H--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHH
Confidence 99999888887654333333 3 344 345899999999999984
Q ss_pred ---CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 347 ---QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 347 ---~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+=-+||-...+.|...-.|..||+||.|.+|.+.+|++-.|.-+
T Consensus 549 ~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 549 IEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 23357778888899999999999999999999999999876543
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=188.64 Aligned_cols=132 Identities=26% Similarity=0.370 Sum_probs=116.0
Q ss_pred ccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCcccc
Q 015093 264 EWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLAR 341 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~ 341 (413)
......+...++.. .+.+++|||++++.++.+++.|.+.|+++..+|++++..+|.+++..|+.|++.|+|||+.+++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 34555555555543 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcC-----CCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHH
Q 015093 342 GIDVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQR 396 (413)
Q Consensus 342 G~d~~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 396 (413)
|+|+|.+++|++++ .|.+..+|+|++||+||. ..|.++++++..+..+...+.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999887 688999999999999998 6899999999887666665544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=187.17 Aligned_cols=159 Identities=18% Similarity=0.116 Sum_probs=116.8
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc-CceEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~-~~~~~ 140 (413)
.|..||.+.+...-.+++++|++||.+|||++...++-..++....+ .++++.|+++|++|....+....... -.+-.
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~-VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSD-VVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCC-EEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 68899999999999999999999999999998877777666665544 89999999999999876665543221 11112
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC---CCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ---SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~---~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+.|....+-. .-.-.|+|+|+-|+-+...+... ......+++||+||+|.+.+..-...+..++... .++++
T Consensus 590 sl~g~ltqEYs--inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYS--INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhHHhc--CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 22222221111 11225899999999999888763 3334558999999999988776666666666666 47799
Q ss_pred EEeeeCCh
Q 015093 218 VFSATMPP 225 (413)
Q Consensus 218 ~lSAT~~~ 225 (413)
++|||..+
T Consensus 666 ~LSATigN 673 (1330)
T KOG0949|consen 666 VLSATIGN 673 (1330)
T ss_pred EEecccCC
Confidence 99999864
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-24 Score=198.02 Aligned_cols=326 Identities=18% Similarity=0.204 Sum_probs=197.2
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC----CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
..|+.+.. .+....+.-..-..|||+|+.|+++..++ ...=+.+.||+|||++.+- +.+.+.. .++|+++
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~Lv 213 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLV 213 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeec
Confidence 34444433 34455555555668999999999988764 3467788999999998854 3444433 4899999
Q ss_pred ccHHHHHHHHHHHHHhhcccCceEEEEECCcc-----------------------hHHHH--HHHhcCCcEEEeChHHHH
Q 015093 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTS-----------------------VREDQ--RILSAGVHVVVGTPGRVF 170 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~--~~~~~~~~Iii~T~~~l~ 170 (413)
|+++|..|+.+++..-.. ..+....+..+.. ..... .....+--|+++|++++.
T Consensus 214 PSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 999999999998865321 2222222222111 00111 111234568999999998
Q ss_pred HHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-----CCceEEEEeeeCChhHHHHHH-------------
Q 015093 171 DMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-----GKIQVGVFSATMPPEALEITR------------- 232 (413)
Q Consensus 171 ~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-----~~~~~i~lSAT~~~~~~~~~~------------- 232 (413)
..-+.....+..+++||+||||+...-.....-..-+.+.. +..+.+.|||||.-..+....
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc
Confidence 88777777788899999999999653221111111111111 134578899999521111000
Q ss_pred --HhcCCCEEEEecCCccc----cCCceEEEEEeCc---------------cccHHHHHHHHH-------Hhc-------
Q 015093 233 --KFMNKPVRILVKRDELT----LEGIKQFHVNVDK---------------EEWKLDTLCDLY-------ETL------- 277 (413)
Q Consensus 233 --~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------------~~~~~~~l~~~~-------~~~------- 277 (413)
..+++..+ .....++. ....+.....++. ..-..+....++ ++.
T Consensus 373 De~~fGeef~-rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~ 451 (1518)
T COG4889 373 DELTFGEEFH-RLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLK 451 (1518)
T ss_pred hhhhhchhhh-cccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 00000000 00000000 0111111111111 111222222222 111
Q ss_pred -------CCCcEEEEEcCcccHHHHHHHHhh---------------CCCeeEeecCCCCHHHHHHHHHH---HhcCCCeE
Q 015093 278 -------AITQSVIFVNTRRKVDWLTDQMRS---------------RDHTVSATHGDMDQNSRDIIMRE---FRSGSSRV 332 (413)
Q Consensus 278 -------~~~~~lIf~~~~~~a~~l~~~l~~---------------~~~~~~~~~~~~~~~~r~~~~~~---f~~~~~~v 332 (413)
+..+.+-||.++++.+.+++.+.. ..+.+..+.|.|+-.+|.+.+.. |....++|
T Consensus 452 ~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI 531 (1518)
T COG4889 452 NIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKI 531 (1518)
T ss_pred CCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhee
Confidence 112568899999998888877753 12456677888998888655443 34567889
Q ss_pred EEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC
Q 015093 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
|-...++.+|+|+|.++.||++++-.|..+.+|.+||++|-
T Consensus 532 lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 532 LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999995
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=176.65 Aligned_cols=172 Identities=26% Similarity=0.292 Sum_probs=134.0
Q ss_pred ceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCccc
Q 015093 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRK 291 (413)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~ 291 (413)
.|+|++||||.+.-.. .--+..+...+.+.....+.+. +......++.|..-++. ..+.++||-+=+++.
T Consensus 387 ~q~i~VSATPg~~E~e---~s~~~vveQiIRPTGLlDP~ie-----vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELE---QSGGNVVEQIIRPTGLLDPEIE-----VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHH---hccCceeEEeecCCCCCCCcee-----eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 5899999999754322 2223444444544444433322 33334455555554433 255799999999999
Q ss_pred HHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC-----CCChhHHHhh
Q 015093 292 VDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLHR 366 (413)
Q Consensus 292 a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-----~~s~~~~~Q~ 366 (413)
|+.+.++|++.|+++..+|++...-+|.+++..++.|..+|||+.+.+.+|+|+|.+..|.+++. ..|..+++|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988765 4688999999
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
+||+.|. -.|+++++.+.-...+-+.+
T Consensus 539 IGRAARN-~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 539 IGRAARN-VNGKVILYADKITDSMQKAI 565 (663)
T ss_pred HHHHhhc-cCCeEEEEchhhhHHHHHHH
Confidence 9999995 56999999887666555544
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=179.86 Aligned_cols=320 Identities=18% Similarity=0.149 Sum_probs=207.3
Q ss_pred CCcHHHHhhhhhhhC---C-------CcEEEeCCCCCchhHHHHHHHHHhcccccC----ceeEEEEcccHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCK---G-------LDVIQQAQSGTGKTATFCSGILQQLDYESL----QCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~---~-------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~----~~~~lvl~P~~~l~~q~~~~ 127 (413)
.++|+|+++++-+-+ | ..+|+...+|+|||+..+..++..+..... -.+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 689999999987754 1 348999999999999987777766654432 1589999996 788889999
Q ss_pred HHHhhcccCceEEEEECCcchH--HHHHHH-----hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH
Q 015093 128 MRALGDYMGVKVHACVGGTSVR--EDQRIL-----SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 200 (413)
+.+|.....+....+++..... ...+.+ .-...|.+.+++++....+. +....++++|+||.|+.-+. .
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~--~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS--D 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--h
Confidence 9999876666666666666530 011111 11346888899998765554 33445799999999998543 4
Q ss_pred HHHHHHHhhCCCCceEEEEeeeCC-hhHHHHHHHh-----------------cCCCE-----------------------
Q 015093 201 DQIYDIFQHLPGKIQVGVFSATMP-PEALEITRKF-----------------MNKPV----------------------- 239 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~lSAT~~-~~~~~~~~~~-----------------~~~~~----------------------- 239 (413)
..+...+..+. -.+.|++|+||- +++.+....+ +..++
T Consensus 393 s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 393 SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 55556666665 345677999984 1111111000 00000
Q ss_pred -------EEEec-CCccccCCceEEEEEeCccc-----------------------------------------------
Q 015093 240 -------RILVK-RDELTLEGIKQFHVNVDKEE----------------------------------------------- 264 (413)
Q Consensus 240 -------~~~~~-~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 264 (413)
..... --....+....+.+.+....
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~ 551 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEK 551 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccc
Confidence 00000 00011122222222222111
Q ss_pred --------------------------cHHHHHHHHH---HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH
Q 015093 265 --------------------------WKLDTLCDLY---ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 265 --------------------------~~~~~l~~~~---~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 315 (413)
.++..|..++ ++....++++..|.+...+.+...+.-.|+.+..++|.++.
T Consensus 552 e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~ 631 (776)
T KOG0390|consen 552 EKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSI 631 (776)
T ss_pred cccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCch
Confidence 1222222222 11122234555555556666666666679999999999999
Q ss_pred HHHHHHHHHHhcCCC--e-EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEE--ecccc
Q 015093 316 NSRDIIMREFRSGSS--R-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF--VTRDD 387 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~--~-vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~--~~~~~ 387 (413)
.+|+.+++.|++... . +|.++.+.++|+++-+++.||++|+.|+++.-.|+++|+.|.|++..|++| ++.+.
T Consensus 632 ~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 632 KQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 999999999997443 3 456677999999999999999999999999999999999999987666554 44443
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-22 Score=185.08 Aligned_cols=304 Identities=17% Similarity=0.211 Sum_probs=197.8
Q ss_pred hhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE--
Q 015093 69 RGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV-- 143 (413)
Q Consensus 69 ~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-- 143 (413)
+..++|..+--+||+|.||||||......++++=.... ..+-+-|.-|++.-+..++.+..--...++-.|.+..
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf 342 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF 342 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe
Confidence 55666766777999999999999887655555422211 1335777888887766665554322222333443333
Q ss_pred CCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHh-------hCCC----
Q 015093 144 GGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQ-------HLPG---- 212 (413)
Q Consensus 144 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~-------~~~~---- 212 (413)
.++ ......|.++|.+.|++.+... +.+..++.||+||||+=. -+...+..++. ....
T Consensus 343 d~t--------i~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERS--vnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 343 DGT--------IGEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERS--VNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred ccc--------cCCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhcc--chHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 222 2345789999999999888764 456778999999999731 12222222222 2222
Q ss_pred --CceEEEEeeeCChhHHHHHHHhcCC-CEEEEecCCccccCCceEEEEEe--CccccHHHHHHHHHHhcCCCcEEEEEc
Q 015093 213 --KIQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNV--DKEEWKLDTLCDLYETLAITQSVIFVN 287 (413)
Q Consensus 213 --~~~~i~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~lIf~~ 287 (413)
..++|.||||+.-......+.++.. |..+.+....++ -..++-..- +...........+.+..+.|-+|||+.
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP--VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP--VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc--eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 5689999999953322222333332 222222222221 111111111 112334556667778889999999999
Q ss_pred CcccHHHHHHHHhhCC----------------------------------------------------------------
Q 015093 288 TRRKVDWLTDQMRSRD---------------------------------------------------------------- 303 (413)
Q Consensus 288 ~~~~a~~l~~~l~~~~---------------------------------------------------------------- 303 (413)
..+++..+++.|++..
T Consensus 490 GQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~ 569 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFN 569 (1172)
T ss_pred ChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhh
Confidence 9999999999997420
Q ss_pred -----------------------------------CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 304 -----------------------------------HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 304 -----------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
.-+..+++-++..++.++++.-..|..-++|+|+++++.+.+|++
T Consensus 570 ~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgI 649 (1172)
T KOG0926|consen 570 ALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGI 649 (1172)
T ss_pred ccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCe
Confidence 114445555667777777777778888899999999999999999
Q ss_pred CEEEEcCCC------------------CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 349 SLVINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 349 ~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
+.||..+.. .|..+--||+||+||.| +|+||.+|+..
T Consensus 650 kYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 650 KYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred eEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999986642 25666789999999997 79999999764
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-23 Score=199.16 Aligned_cols=328 Identities=18% Similarity=0.179 Sum_probs=221.4
Q ss_pred CCCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 61 EKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.+||.||.+.++.++ .++++|+...+|-|||...+..+-......+..+..|||+|...+. .|.+++..+. +
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~---~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT---D 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHh---h
Confidence 589999999998765 4788999999999999876544433333333445899999987754 4888899987 6
Q ss_pred ceEEEEECCcchHHHHHHH----hc-----CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHH
Q 015093 137 VKVHACVGGTSVREDQRIL----SA-----GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~----~~-----~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 207 (413)
.++.+++|........+.. .. ..+++++|++.++.-... +..-.+.++++||||++-+. ...+...+
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~--~~~l~~~l 520 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND--ESKLYESL 520 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--HHHHHHHH
Confidence 6788888877655443332 12 478999999988643322 22233689999999999544 34444446
Q ss_pred hhCCCCceEEEEeeeCC-hhHHHHHHHh-cCCCEEEEe---------------------------------cCCccccCC
Q 015093 208 QHLPGKIQVGVFSATMP-PEALEITRKF-MNKPVRILV---------------------------------KRDELTLEG 252 (413)
Q Consensus 208 ~~~~~~~~~i~lSAT~~-~~~~~~~~~~-~~~~~~~~~---------------------------------~~~~~~~~~ 252 (413)
..+..+. .+++|+||- +++.++.... +..|..+.. ..+...++.
T Consensus 521 ~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k 599 (1373)
T KOG0384|consen 521 NQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPK 599 (1373)
T ss_pred HHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCC
Confidence 6665444 566888884 2333322111 000000000 000000111
Q ss_pred ceEEEE-Ee-----------------------------------------------Ccccc-----HH-----HHHHHH-
Q 015093 253 IKQFHV-NV-----------------------------------------------DKEEW-----KL-----DTLCDL- 273 (413)
Q Consensus 253 ~~~~~~-~~-----------------------------------------------~~~~~-----~~-----~~l~~~- 273 (413)
...+.. .+ +..+. .. ..+..+
T Consensus 600 ~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI 679 (1373)
T KOG0384|consen 600 EETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALI 679 (1373)
T ss_pred cceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHH
Confidence 111110 00 00000 00 122222
Q ss_pred ------------HHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC---CCeEEEEe
Q 015093 274 ------------YETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG---SSRVLITT 336 (413)
Q Consensus 274 ------------~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vli~t 336 (413)
+... .+.++|||.+-+....-++++|..++++...+.|....+-|+..++.|... ..-+|+||
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLST 759 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLST 759 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEec
Confidence 2222 446999999999999999999999999999999999999999999999864 45689999
Q ss_pred CccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEeccccHH--HHHHHHHH
Q 015093 337 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDDR--MLADIQRF 397 (413)
Q Consensus 337 ~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~--~~~~~~~~ 397 (413)
.+.+.|||+..+++||+++..|++..=.|+..||+|.|+. -.+|.+++....+ ++..-...
T Consensus 760 RAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 760 RAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred ccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 4577888876543 44433333
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=159.91 Aligned_cols=188 Identities=37% Similarity=0.560 Sum_probs=148.2
Q ss_pred hCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 57 AYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
..++..|+++|.+++..+... +.+++.+|||+|||.+++.+++..+.... ..+++|++|+..++.|+...+.......
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 356778999999999999988 89999999999999988888888776543 3489999999999999999998877654
Q ss_pred CceEEEEECCcchHHHHHHHhcCC-cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 136 GVKVHACVGGTSVREDQRILSAGV-HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~-~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
........++.............. +++++|++.+.............++++|+||+|.+....+...+..++...++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 423333333333223333333344 9999999999999888766666789999999999876567888888888887789
Q ss_pred eEEEEeeeCChhHHHHHHHhcCCCEEEEecC
Q 015093 215 QVGVFSATMPPEALEITRKFMNKPVRILVKR 245 (413)
Q Consensus 215 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 245 (413)
+++++|||+++........++.....+....
T Consensus 162 ~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 162 QLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred eEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 9999999999888888888887666555443
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=181.22 Aligned_cols=145 Identities=27% Similarity=0.355 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 265 WKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
.....+...+... .+.+++|||++.+.++.+++.|.+.|+++..+|++++..+|..++..|+.|...|+|||+.+++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 3455555555443 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCC-----CCChhHHHhhhcccCCCCCcceEEEEecc---------ccHHHHHHHHHHhccccccCCcc
Q 015093 343 IDVQQVSLVINYDL-----PTQPENYLHRIGRSGRFGRKGVAINFVTR---------DDDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 343 ~d~~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
+|+|.+++||+++. |.+...|+||+||+||. ..|.++++++. .+....+.++..|++...-+|..
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 588 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKT 588 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChh
Confidence 99999999998775 67899999999999996 78999999985 35566777788888888887766
Q ss_pred hh
Q 015093 409 VA 410 (413)
Q Consensus 409 ~~ 410 (413)
..
T Consensus 589 ~~ 590 (652)
T PRK05298 589 IK 590 (652)
T ss_pred HH
Confidence 53
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=178.62 Aligned_cols=316 Identities=15% Similarity=0.176 Sum_probs=215.3
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-+.-.+..|+ |..+.||-|||+++.+|++-.... |..+-|++.+.-|+..-.+++..+...+|+++++
T Consensus 78 r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~---GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 78 RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT---GKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc---CCceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 79999998887776664 899999999999998877543333 3478888999999999899999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
...+........ .-.++|+++|...|- +.++.. ......+.+.|+||+|.++ +..
T Consensus 153 i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~ 230 (925)
T PRK12903 153 NKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSN 230 (925)
T ss_pred eCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchH
Confidence 987766444433 345899999998874 334322 1123457889999999643 111
Q ss_pred cHHHHHHHHhhCCC-------------------------------------------------------C----------
Q 015093 199 FKDQIYDIFQHLPG-------------------------------------------------------K---------- 213 (413)
Q Consensus 199 ~~~~~~~~~~~~~~-------------------------------------------------------~---------- 213 (413)
....+..+...+.. +
T Consensus 231 ~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V 310 (925)
T PRK12903 231 LYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKI 310 (925)
T ss_pred HHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEE
Confidence 00111111111100 0
Q ss_pred ---------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 214 ---------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 214 ---------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
.++.|||+|......++...|....+.++
T Consensus 311 ~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IP 390 (925)
T PRK12903 311 ELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVP 390 (925)
T ss_pred EEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECC
Confidence 36778888876655555544433333332
Q ss_pred ecCCccccCCceEEEEEeCccccHHHHHHHHHHh-c-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHH
Q 015093 243 VKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET-L-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDI 320 (413)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 320 (413)
... +......... .+.....+..++..-++. + .+.|+||.|.|++.++.+++.|.+.|++..++++.....+.+
T Consensus 391 Tnk-P~~R~D~~d~--iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~- 466 (925)
T PRK12903 391 TNK-PVIRKDEPDS--IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAE- 466 (925)
T ss_pred CCC-CeeeeeCCCc--EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHH-
Confidence 222 1111111111 112234455555554443 2 567999999999999999999999999999999875533333
Q ss_pred HHHHHhcC-CCeEEEEeCccccCCCCCCC--------CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 321 IMREFRSG-SSRVLITTDLLARGIDVQQV--------SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 321 ~~~~f~~~-~~~vli~t~~~~~G~d~~~~--------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
++. +.| ...|.|||+++++|.|+.-- -+||....+.|...-.|..||+||.|.+|.+.+|++-.|.-+
T Consensus 467 IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~ 543 (925)
T PRK12903 467 IIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLF 543 (925)
T ss_pred HHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHH
Confidence 222 445 45688999999999998632 278888888999889999999999999999999998776543
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=183.95 Aligned_cols=327 Identities=20% Similarity=0.239 Sum_probs=219.4
Q ss_pred CCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhccccc------CceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYES------LQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~------~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.||.||.+.++.+.. +-+.|++..+|-|||+..+--+.....+.+ .....|||||+ .|+.-|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 689999999988754 456999999999999987543332222221 12358999997 7888899999999
Q ss_pred hcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC
Q 015093 132 GDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP 211 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 211 (413)
++. +++....|........+.-....+|+|++|+.+.+.+.. +....+.++|+||-|-+. +....+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVik--N~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIK--NSKTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceec--chHHHHHHHHHHHh
Confidence 886 566666676655444444445679999999998754432 111236799999999773 34555666666666
Q ss_pred CCceEEEEeeeCCh-hHHHH------------------------------------------------------------
Q 015093 212 GKIQVGVFSATMPP-EALEI------------------------------------------------------------ 230 (413)
Q Consensus 212 ~~~~~i~lSAT~~~-~~~~~------------------------------------------------------------ 230 (413)
.+.+ +.+|+||.- +..++
T Consensus 1128 a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5554 559999841 11110
Q ss_pred -------------HHHhc---------------CC---CEEEEecCCccccCCc----------------eEEEEEeC--
Q 015093 231 -------------TRKFM---------------NK---PVRILVKRDELTLEGI----------------KQFHVNVD-- 261 (413)
Q Consensus 231 -------------~~~~~---------------~~---~~~~~~~~~~~~~~~~----------------~~~~~~~~-- 261 (413)
++.|+ .. ...-........ .+. .+-.....
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S-~gt~~~HvFqaLqYlrKLcnHpaLvlt~~ 1285 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEES-LGTDKTHVFQALQYLRKLCNHPALVLTPV 1285 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhc-cCcchHHHHHHHHHHHHhcCCcceeeCCC
Confidence 00000 00 000000000000 000 00000000
Q ss_pred ---------------------ccccHHHHHHHHHHhc----------------CCCcEEEEEcCcccHHHHHHHHhhCC-
Q 015093 262 ---------------------KEEWKLDTLCDLYETL----------------AITQSVIFVNTRRKVDWLTDQMRSRD- 303 (413)
Q Consensus 262 ---------------------~~~~~~~~l~~~~~~~----------------~~~~~lIf~~~~~~a~~l~~~l~~~~- 303 (413)
....|+.+|.+++... ...++||||+-+..++-+-+.|-+..
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 0123677777777544 22479999999999998887776543
Q ss_pred --CeeEeecCCCCHHHHHHHHHHHhcC-CCeEE-EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcce-
Q 015093 304 --HTVSATHGDMDQNSRDIIMREFRSG-SSRVL-ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV- 378 (413)
Q Consensus 304 --~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~- 378 (413)
+....+.|..++.+|.++.++|+++ .++|| .+|.+.+.|+|+.+++.||+++-.|++..=+|.+.|++|.|++..
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 3344789999999999999999998 67877 556799999999999999999999999999999999999998755
Q ss_pred -EEEEeccccHH-HHHHHHHH
Q 015093 379 -AINFVTRDDDR-MLADIQRF 397 (413)
Q Consensus 379 -~~~~~~~~~~~-~~~~~~~~ 397 (413)
++.+++.+..+ .+..+++|
T Consensus 1446 NVyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392|consen 1446 NVYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred eeeeehhcccHHHHHhhHHHH
Confidence 66677776554 45555555
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=178.01 Aligned_cols=313 Identities=17% Similarity=0.192 Sum_probs=192.8
Q ss_pred CCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH-HHHHHHhhcccC
Q 015093 62 KPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI-EKVMRALGDYMG 136 (413)
Q Consensus 62 ~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~-~~~~~~~~~~~~ 136 (413)
++|+-|.+.... +..++.+++.|+||+|||++|++|++... .+.+++|.|||++|++|. .+.+..+....+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~ 320 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQEVFH 320 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence 799999984444 44567799999999999999999988753 245899999999999999 467777766667
Q ss_pred ceEEEEECCcchHHH------------------------------------------------H----------------
Q 015093 137 VKVHACVGGTSVRED------------------------------------------------Q---------------- 152 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~------------------------------------------------~---------------- 152 (413)
+++..+.|+.++-.. .
T Consensus 321 ~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~~ 400 (820)
T PRK07246 321 IDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFYD 400 (820)
T ss_pred CcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcch
Confidence 666666654332100 0
Q ss_pred -------HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-----c-------HH------------
Q 015093 153 -------RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-----F-------KD------------ 201 (413)
Q Consensus 153 -------~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----~-------~~------------ 201 (413)
+.....++|+|++...|...+..... +...+.+|+||||++.+.. . ..
T Consensus 401 ~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 479 (820)
T PRK07246 401 YDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPLPL 479 (820)
T ss_pred hhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHHHH
Confidence 00012468999999988877654432 4557999999999875311 0 00
Q ss_pred --------------------------------------HH-----------HHHHhhC----------------------
Q 015093 202 --------------------------------------QI-----------YDIFQHL---------------------- 210 (413)
Q Consensus 202 --------------------------------------~~-----------~~~~~~~---------------------- 210 (413)
.+ ..++..-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~~~ 559 (820)
T PRK07246 480 LQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLNSA 559 (820)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEEee
Confidence 00 0000000
Q ss_pred -----------CCCceEEEEeeeCC--hhHHHHHHHhcCCC-EEEEecCCccccCCceEEEEE--eCc-----cccHHHH
Q 015093 211 -----------PGKIQVGVFSATMP--PEALEITRKFMNKP-VRILVKRDELTLEGIKQFHVN--VDK-----EEWKLDT 269 (413)
Q Consensus 211 -----------~~~~~~i~lSAT~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~ 269 (413)
+....+|++|||++ +.. .+ ...++-. ....... .....-...+.. .+. .+.....
T Consensus 560 pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~~--~~~~~~~~~~i~~~~p~~~~~~~~~~~~~ 635 (820)
T PRK07246 560 SKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKIE--KDKKQDQLVVVDQDMPLVTETSDEVYAEE 635 (820)
T ss_pred eCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecCC--CChHHccEEEeCCCCCCCCCCChHHHHHH
Confidence 01136788999985 222 23 3233321 1111111 111111111111 111 1122222
Q ss_pred HHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 270 LCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 270 l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
+...+.. ..+++++|+++|.+..+.+++.|......+ ...|... .+.++++.|++++..||++|..+.+|+|+|.
T Consensus 636 ~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 636 IAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 2222211 356899999999999999999997654444 4444332 2466899999988899999999999999973
Q ss_pred --CCEEEEcCCCCC------------------------------hhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 348 --VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 348 --~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
...||+.+.|.. ...+.|.+||.-|...+.-+++++++.
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 556677776531 223689999999986654455555544
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-21 Score=168.73 Aligned_cols=327 Identities=15% Similarity=0.194 Sum_probs=217.2
Q ss_pred CCCCcHHHHhhhhhh-hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 60 FEKPSAIQQRGIVPF-CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~-~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
+..|-|+|++.+... .+|+.+++...+|-|||..++. |...... ....||+||. .+...|.+.+.+|.....-
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyra---EwplliVcPA-svrftWa~al~r~lps~~p- 269 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRA---EWPLLIVCPA-SVRFTWAKALNRFLPSIHP- 269 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhh---cCcEEEEecH-HHhHHHHHHHHHhcccccc-
Confidence 346889999999774 5577899999999999998854 3333333 2378999996 5677799999999875433
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEE
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
+.+..++.+.... ......|.|.+++.+...-.- +....+++||+||+|++-+. ..+....+........++|+
T Consensus 270 i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 270 IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred eEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhheEE
Confidence 3344443331111 112346889999987543221 12233689999999987543 23344444444445567999
Q ss_pred EeeeCC-------------------hhHHHHHHHhcCCC-EEEEecCC---------------------------ccccC
Q 015093 219 FSATMP-------------------PEALEITRKFMNKP-VRILVKRD---------------------------ELTLE 251 (413)
Q Consensus 219 lSAT~~-------------------~~~~~~~~~~~~~~-~~~~~~~~---------------------------~~~~~ 251 (413)
+|+||. ++..++..+|+... ..+..... .. ++
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL-Pp 422 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL-PP 422 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC-Cc
Confidence 999984 23334444444321 11111000 00 11
Q ss_pred CceEEEEEeCc------------------------------------cccHHHHHHHHHHh------cCCCcEEEEEcCc
Q 015093 252 GIKQFHVNVDK------------------------------------EEWKLDTLCDLYET------LAITQSVIFVNTR 289 (413)
Q Consensus 252 ~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~------~~~~~~lIf~~~~ 289 (413)
.-+...+.... ...+...+.+.+.. .+..|.+||+...
T Consensus 423 Krr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~ 502 (689)
T KOG1000|consen 423 KRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQ 502 (689)
T ss_pred cceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhH
Confidence 11111111110 11234444444443 2456899999999
Q ss_pred ccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEE-EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhh
Q 015093 290 RKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG-SSRVL-ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 367 (413)
Q Consensus 290 ~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~ 367 (413)
.-.+.+...+.++++....+.|.++..+|....+.|+.. +..|- ++..+.+.|+++...+.||+...+|++.-++|.-
T Consensus 503 ~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAE 582 (689)
T KOG1000|consen 503 IVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAE 582 (689)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEech
Confidence 999999999999999999999999999999999999854 44544 4557889999999999999999999999999999
Q ss_pred cccCCCCCcceEEEEecc----ccHHHHHHHHHHhc
Q 015093 368 GRSGRFGRKGVAINFVTR----DDDRMLADIQRFYN 399 (413)
Q Consensus 368 GR~~R~g~~g~~~~~~~~----~~~~~~~~~~~~~~ 399 (413)
.|++|.|+...+.+.|.- .|..+...+.+.|.
T Consensus 583 DRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 583 DRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred hhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 999999987555444432 25556666665554
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=171.80 Aligned_cols=276 Identities=16% Similarity=0.180 Sum_probs=178.3
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-+.-.+.+ .-+..+.||.|||+++.+|++-.... +..+-|++++..|+.+-++.+..+...+|+
T Consensus 73 lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 344 688999887765544 46999999999999998887533222 448999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-ccC-----------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~----------- 198 (413)
++++..++........ .-.++|+++|...|- +.++.. ......+.+.|+||+|.++ +..
T Consensus 147 svg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~ 224 (870)
T CHL00122 147 TVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSK 224 (870)
T ss_pred ceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCc
Confidence 9999988776544433 345799999997663 333221 1123457899999999643 210
Q ss_pred ----cHHHHHHHHhhCC-------------------------------------------------------CC------
Q 015093 199 ----FKDQIYDIFQHLP-------------------------------------------------------GK------ 213 (413)
Q Consensus 199 ----~~~~~~~~~~~~~-------------------------------------------------------~~------ 213 (413)
.......+.+.+. .+
T Consensus 225 ~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~ 304 (870)
T CHL00122 225 TNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVR 304 (870)
T ss_pred cchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 0000000000000 00
Q ss_pred -------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCC
Q 015093 214 -------------------------------------------------------IQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 214 -------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~ 238 (413)
.++.|||+|......++.. .++-.
T Consensus 305 dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~-iY~l~ 383 (870)
T CHL00122 305 NNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEK-IYNLE 383 (870)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHH-HhCCC
Confidence 3678899998765544444 44443
Q ss_pred EEEEecCCccccCCceEEEEEeCccccHHHHHHHH-HHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH-
Q 015093 239 VRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL-YETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ- 315 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~- 315 (413)
+...+...+.......... ......+..++..- ...+ .+.|+||-+.|++..+.+++.|.+.|+++.++++....
T Consensus 384 vv~IPtnkp~~R~d~~d~v--~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~ 461 (870)
T CHL00122 384 VVCIPTHRPMLRKDLPDLI--YKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENV 461 (870)
T ss_pred EEECCCCCCccceeCCCeE--EeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccc
Confidence 3333222222222222121 22333455544443 3333 56799999999999999999999999999999987422
Q ss_pred HHHHHHHHHHhcC-CCeEEEEeCccccCCCCC
Q 015093 316 NSRDIIMREFRSG-SSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 316 ~~r~~~~~~f~~~-~~~vli~t~~~~~G~d~~ 346 (413)
..-.+++.. .| ...|.|||+++++|.|+.
T Consensus 462 ~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 462 RRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred hhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 222334432 34 345889999999999974
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-20 Score=164.72 Aligned_cols=331 Identities=13% Similarity=0.057 Sum_probs=225.5
Q ss_pred HHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 51 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
+.+.++.+.....+.+|.++++.+..|++.++.-.|.+||++++.......+.... ....+++.|+.++++...+.+.-
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-ATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc-ccceecchhHHHHhhccCCceEE
Confidence 34556667777899999999999999999999999999999999877766554443 33789999999987654433211
Q ss_pred hh---cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCC----CCccEEEEccchhhhccCcHH--
Q 015093 131 LG---DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP----DYIRMFVLDEADEMLSRGFKD-- 201 (413)
Q Consensus 131 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~----~~~~~iIiDE~h~~~~~~~~~-- 201 (413)
.. ....-.+.-.+.+............+.+++++.+++.......+.... -...++++||+|..... +..
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~ 432 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALA 432 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHH
Confidence 10 111122333334444444445555678999999998876654433322 22467999999964322 232
Q ss_pred --HHHHHHhhC-----CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc--------cccH
Q 015093 202 --QIYDIFQHL-----PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK--------EEWK 266 (413)
Q Consensus 202 --~~~~~~~~~-----~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 266 (413)
.+.++.+.+ ..+.+++-.+||.............-.......... .+.+.+++..+-+. .+.+
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG--SPs~~K~~V~WNP~~~P~~~~~~~~~ 510 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG--SPSSEKLFVLWNPSAPPTSKSEKSSK 510 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC--CCCccceEEEeCCCCCCcchhhhhhH
Confidence 222332222 236788888899876655444444334433333322 23344444444332 1233
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhh----CCC----eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe
Q 015093 267 LDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRS----RDH----TVSATHGDMDQNSRDIIMREFRSGSSRVLITT 336 (413)
Q Consensus 267 ~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t 336 (413)
+.....++.+. .+-+++.||++++.|+.+.....+ .+. .+..|.|+....+|.++..+.-.|++.-+|+|
T Consensus 511 i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaT 590 (1034)
T KOG4150|consen 511 VVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIAT 590 (1034)
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEec
Confidence 44444444433 345899999999988876544432 221 35578899999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecc
Q 015093 337 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 337 ~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
++++.|+|+..++.|++.+.|.|...+.|..||+||.+++..++.+...
T Consensus 591 NALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 591 NALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred chhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEec
Confidence 9999999999999999999999999999999999999998887766654
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=166.30 Aligned_cols=321 Identities=17% Similarity=0.199 Sum_probs=214.7
Q ss_pred CCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+|.+||.-.++.+. .+-+.|+...+|-|||...+ +.+..|...+..+.=|||||+..|-+ |.+++.+|++ .+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~gpHLVVvPsSTleN-WlrEf~kwCP--sl 474 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNPGPHLVVVPSSTLEN-WLREFAKWCP--SL 474 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCCCCcEEEecchhHHH-HHHHHHHhCC--ce
Confidence 58899999998753 24458999999999997764 44444444443447799999988665 8899999998 56
Q ss_pred eEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC
Q 015093 138 KVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 212 (413)
++...+|........+-. ..+.+|+++||+.....-.... +...++.++|+||+|.+-+.. ...+..+ -.++
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L-M~I~- 551 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL-MSIN- 551 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHh-cccc-
Confidence 787888876543332221 2368999999987753322222 223457899999999886554 2222222 2233
Q ss_pred CceEEEEeeeCC-hhHHHHH---------------------------------------------HHhcCC---------
Q 015093 213 KIQVGVFSATMP-PEALEIT---------------------------------------------RKFMNK--------- 237 (413)
Q Consensus 213 ~~~~i~lSAT~~-~~~~~~~---------------------------------------------~~~~~~--------- 237 (413)
....+++|+||- +++.+++ +..+..
T Consensus 552 An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~q 631 (941)
T KOG0389|consen 552 ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQ 631 (941)
T ss_pred ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344677999983 1111110 000000
Q ss_pred -----C-----EE-EEec---------------------CCccccCC----------------ceEEE------------
Q 015093 238 -----P-----VR-ILVK---------------------RDELTLEG----------------IKQFH------------ 257 (413)
Q Consensus 238 -----~-----~~-~~~~---------------------~~~~~~~~----------------~~~~~------------ 257 (413)
| +. +... .......+ .+.++
T Consensus 632 VL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~i 711 (941)
T KOG0389|consen 632 VLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRI 711 (941)
T ss_pred HHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHH
Confidence 0 00 0000 00000000 00000
Q ss_pred --------------------------------------EEeCc----cccHHHHHHHHHHhc--CCCcEEEEEcCcccHH
Q 015093 258 --------------------------------------VNVDK----EEWKLDTLCDLYETL--AITQSVIFVNTRRKVD 293 (413)
Q Consensus 258 --------------------------------------~~~~~----~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~ 293 (413)
..+.. ...+...|..++... .+.++|||..-.....
T Consensus 712 l~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLD 791 (941)
T KOG0389|consen 712 LNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLD 791 (941)
T ss_pred hCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHH
Confidence 00000 123666777777654 4469999999988888
Q ss_pred HHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCC-C-eEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccC
Q 015093 294 WLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS-S-RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 371 (413)
Q Consensus 294 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 371 (413)
-+--.|.-.++....+.|.+.-.+|+.+++.|..++ + -+|++|.+.+.|||+.++++||+++...++-.=.|+-.||+
T Consensus 792 ILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcH 871 (941)
T KOG0389|consen 792 ILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCH 871 (941)
T ss_pred HHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHH
Confidence 888888899999999999999999999999998765 3 36688999999999999999999999999999999999999
Q ss_pred CCCC--cceEEEEeccccHH
Q 015093 372 RFGR--KGVAINFVTRDDDR 389 (413)
Q Consensus 372 R~g~--~g~~~~~~~~~~~~ 389 (413)
|.|+ +-.++.+++....+
T Consensus 872 RvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 872 RVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred hhCCcceeEEEEEEecCcHH
Confidence 9996 46677788877654
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=158.64 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc----CCCeEEEEeCccccCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS----GSSRVLITTDLLARGI 343 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vli~t~~~~~G~ 343 (413)
..+..++.. ..|+++|.+.|...++.+++.|...--....+.|..+ .+..+++.|+. |...||++|..+.+||
T Consensus 460 ~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 333444443 4578999999999999999999764223345555432 35667888887 4688999999999999
Q ss_pred CC--------C--CCCEEEEcCCCCC-------------------------hhHHHhhhcccCCCCCc--ceEEEEeccc
Q 015093 344 DV--------Q--QVSLVINYDLPTQ-------------------------PENYLHRIGRSGRFGRK--GVAINFVTRD 386 (413)
Q Consensus 344 d~--------~--~~~~vi~~~~~~s-------------------------~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 386 (413)
|+ | .+.+||+...|+. ...+.|.+||.-|...+ .-.+.++++.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 99 3 3888998777642 22368999999998765 3444444443
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-18 Score=163.74 Aligned_cols=273 Identities=15% Similarity=0.153 Sum_probs=178.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-+--.+..|+ |..+.||.|||+++.+|++-.... +..+-||+++.-||..-++++..+...+|+++++
T Consensus 85 r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~---GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 85 RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT---GKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc---CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 78888988777775554 999999999999998887654443 3479999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-----HHHHHc--CCCCCCCccEEEEccchhhh-ccC---------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRV-----FDMLRR--QSLRPDYIRMFVLDEADEML-SRG--------------- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l-----~~~~~~--~~~~~~~~~~iIiDE~h~~~-~~~--------------- 198 (413)
..++...... ...-.++|+++|...| .+.+.. .......+.+.|+||+|.++ +..
T Consensus 160 i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~ 237 (939)
T PRK12902 160 IQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQE 237 (939)
T ss_pred ECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccchH
Confidence 8877654433 3345789999999887 333322 12234557899999999643 111
Q ss_pred cHHHHHHHHhhCCC--------------C---------------------------------------------------
Q 015093 199 FKDQIYDIFQHLPG--------------K--------------------------------------------------- 213 (413)
Q Consensus 199 ~~~~~~~~~~~~~~--------------~--------------------------------------------------- 213 (413)
.......+...+.. .
T Consensus 238 ~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYi 317 (939)
T PRK12902 238 KYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYI 317 (939)
T ss_pred HHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEE
Confidence 00000011100000 0
Q ss_pred ---------------------------------------------------------ceEEEEeeeCChhHHHHHHHhcC
Q 015093 214 ---------------------------------------------------------IQVGVFSATMPPEALEITRKFMN 236 (413)
Q Consensus 214 ---------------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~ 236 (413)
.++.+||+|......++...|..
T Consensus 318 V~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l 397 (939)
T PRK12902 318 VRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKL 397 (939)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCC
Confidence 36777888876555444444433
Q ss_pred CCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHH-hc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCC-C
Q 015093 237 KPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYE-TL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD-M 313 (413)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~-~ 313 (413)
..+.+........ ....... +.....+..++.+-+. .+ .+.|+||-+.|++..+.+++.|.+.|+++.+++.. .
T Consensus 398 ~Vv~IPTnkP~~R-~d~~d~v--y~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~ 474 (939)
T PRK12902 398 EVTVIPTNRPRRR-QDWPDQV--YKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPE 474 (939)
T ss_pred cEEEcCCCCCeee-ecCCCeE--EcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCc
Confidence 3333322222211 1111111 2233455555554443 33 56799999999999999999999999999999987 2
Q ss_pred CHHHHHHHHHHHhcCC-CeEEEEeCccccCCCCC
Q 015093 314 DQNSRDIIMREFRSGS-SRVLITTDLLARGIDVQ 346 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~ 346 (413)
....-.+++. ..|. ..|.|||+++++|.|+.
T Consensus 475 ~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 475 NVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred chHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 3222233433 2444 45889999999998874
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-20 Score=174.40 Aligned_cols=321 Identities=17% Similarity=0.190 Sum_probs=221.6
Q ss_pred CCCcHHHHhhhhhhhC--C--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 61 EKPSAIQQRGIVPFCK--G--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~--~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
.++.+||...++.+.+ + -+.|+...+|-|||...+..+...+..++..+..+|+||+..|.+ |..++..|+. .
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaP--S 469 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAP--S 469 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccc--c
Confidence 4899999999998876 2 348999999999999998888887777777778999999999887 7778888876 4
Q ss_pred ceEEEEECCcchHH--HHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 137 VKVHACVGGTSVRE--DQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 137 ~~~~~~~~~~~~~~--~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
+......|...... ..++.....+|+++|++.+.. ....+..-.+.++||||.|++.+ ....+...+.......
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~L~t~y~~q 545 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKN--AICKLTDTLNTHYRAQ 545 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccc--hhhHHHHHhhccccch
Confidence 44445555443221 223345688999999998764 11111122367999999999844 3444555555333344
Q ss_pred eEEEEeeeCChh-HHH-----------------HHHHhcCCCEEEEe---------------------------------
Q 015093 215 QVGVFSATMPPE-ALE-----------------ITRKFMNKPVRILV--------------------------------- 243 (413)
Q Consensus 215 ~~i~lSAT~~~~-~~~-----------------~~~~~~~~~~~~~~--------------------------------- 243 (413)
..+++|+||.-+ +.+ .+..++..|..-..
T Consensus 546 ~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeV 625 (1157)
T KOG0386|consen 546 RRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEV 625 (1157)
T ss_pred hhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHH
Confidence 567788888410 000 00011110000000
Q ss_pred ------------c---------------------------CCc------------------cccCCc----eEEE--EEe
Q 015093 244 ------------K---------------------------RDE------------------LTLEGI----KQFH--VNV 260 (413)
Q Consensus 244 ------------~---------------------------~~~------------------~~~~~~----~~~~--~~~ 260 (413)
. ... +...++ ...+ ..+
T Consensus 626 E~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL 705 (1157)
T KOG0386|consen 626 EQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDL 705 (1157)
T ss_pred hhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHH
Confidence 0 000 000000 0000 000
Q ss_pred CccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC---eEEEE
Q 015093 261 DKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS---RVLIT 335 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~ 335 (413)
-....+...+..++.+. .++++|.|+.-......+-.+|.-.++....+.|.+...+|...++.|..... .+|.+
T Consensus 706 ~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Flls 785 (1157)
T KOG0386|consen 706 VRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLS 785 (1157)
T ss_pred HHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeee
Confidence 11234566666666544 56899999999999999999999999999999999999999999999987543 47788
Q ss_pred eCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 336 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
|.+.+.|+|+..++.||+++..|++....|+-.|+.|.|+...+.++......
T Consensus 786 tragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 786 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred ecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 99999999999999999999999999999999999999987776666655433
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-17 Score=165.44 Aligned_cols=109 Identities=14% Similarity=0.198 Sum_probs=81.0
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCC--eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC--CCEEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDH--TVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVIN 353 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--~~~vi~ 353 (413)
.++++||+++|.+..+.+++.|..... ....+.-+++...|.++++.|++++..||++|..+.+|+|+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 557999999999999999999975422 1222222333345788999999988889999999999999996 588888
Q ss_pred cCCCCC------------------------------hhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 354 YDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 354 ~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.+.|+. ...+.|.+||.-|...+.-++++++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 887641 123589999999987654455555543
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=136.22 Aligned_cols=144 Identities=41% Similarity=0.570 Sum_probs=111.9
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+++++.+|||+|||.+++..+....... ...+++|++|+..++.|+.+.+...... +..+....+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 3589999999999999988888766553 3459999999999999999999887765 6777777777665554444456
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
..+|+++|++.+.............++++|+||+|.+....................+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999988877655556689999999999876654443323344456678899999997
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=136.53 Aligned_cols=118 Identities=43% Similarity=0.720 Sum_probs=109.5
Q ss_pred cHHHHHHHHHHhcC--CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 265 WKLDTLCDLYETLA--ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~~--~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
.+...+..++.... ++++||||++.+.++.+++.|.+.+..+..+||+++..+|..+++.|.++...++++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 57777777777663 7899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEE
Q 015093 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 382 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 382 (413)
+|+|.++++|+++++++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998888764
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=153.89 Aligned_cols=281 Identities=17% Similarity=0.213 Sum_probs=185.3
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
++-+|||.||||.-+ ++++...+ ..++.-|.+-|+.+.++.++.. |+...+++|......... ...+
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~ak---sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~a 260 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNPA 260 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhhhc---cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CCcc
Confidence 566899999999765 45554444 6799999999999999888876 677777777654322211 1235
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCC
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~ 238 (413)
+.+-+|.++.- ....+++.|+||++.+.+..++-+|.+.+--+. ...+ +-+-| ...++.+..+...
T Consensus 261 ~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiH---LCGep--svldlV~~i~k~T 327 (700)
T KOG0953|consen 261 QHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIH---LCGEP--SVLDLVRKILKMT 327 (700)
T ss_pred cceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhh---ccCCc--hHHHHHHHHHhhc
Confidence 67777766542 123378999999999988877766665443332 2222 22233 2334444443322
Q ss_pred EEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCe-eEeecCCCCHHH
Q 015093 239 VRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT-VSATHGDMDQNS 317 (413)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~-~~~~~~~~~~~~ 317 (413)
..... .+.+..... -...+.+..-++....|.++| |-|++....+...+.+.+.. +.+++|.+++..
T Consensus 328 Gd~ve----------v~~YeRl~p-L~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeT 395 (700)
T KOG0953|consen 328 GDDVE----------VREYERLSP-LVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPET 395 (700)
T ss_pred CCeeE----------EEeecccCc-ceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCch
Confidence 11000 011111111 111123344455556666655 55678889999999888765 999999999999
Q ss_pred HHHHHHHHhc--CCCeEEEEeCccccCCCCCCCCEEEEcCC---------CCChhHHHhhhcccCCCCC---cceEEEEe
Q 015093 318 RDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL---------PTQPENYLHRIGRSGRFGR---KGVAINFV 383 (413)
Q Consensus 318 r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~---~g~~~~~~ 383 (413)
|.+-...|++ ++.+|||||+++++|+|+ +++-||+++. +.+..+..|..||+||.|. .|.+.++.
T Consensus 396 r~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 396 RLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred hHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 9999999987 889999999999999999 7888887765 3578899999999999863 36666655
Q ss_pred ccccHHHHHHHHHHhccccc
Q 015093 384 TRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~ 403 (413)
. +.+..+.+-++...+
T Consensus 475 ~----eDL~~L~~~l~~p~e 490 (700)
T KOG0953|consen 475 S----EDLKLLKRILKRPVE 490 (700)
T ss_pred H----hhHHHHHHHHhCCch
Confidence 4 445555555554333
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-19 Score=146.36 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=102.1
Q ss_pred CCcHHHHhhhhhhhC-------CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 62 KPSAIQQRGIVPFCK-------GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~-------~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
+|+++|.+++..+.. .+++++.+|||||||.+++..+..... +++|++|+..|++|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 589999999999874 578999999999999998765655533 8999999999999999999766543
Q ss_pred cCceEEE-----------EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-----------CCCCCccEEEEccch
Q 015093 135 MGVKVHA-----------CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-----------LRPDYIRMFVLDEAD 192 (413)
Q Consensus 135 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-----------~~~~~~~~iIiDE~h 192 (413)
....... ..................+++++|++.+........ ......++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2111000 001111111222234467899999999987765421 122346899999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 193 EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
++..... +..+.. .+...+++|||||.
T Consensus 157 ~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9754431 344444 45677999999995
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-17 Score=156.74 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEEEEeCccc
Q 015093 264 EWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG-SSRVLITTDLLA 340 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~ 340 (413)
..+..++..-+... .+.|+||-+.|++..+.+++.|+..|+++.++++.....|.+.+-+ .| ...|.|||+|++
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAG 687 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcC
Confidence 44566555554433 6679999999999999999999999999999988866444433333 33 345889999999
Q ss_pred cCCCCC--------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 341 RGIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 341 ~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+|.|+. +=-+||-...+.|...-.|..||+||.|.+|.+.+|++-.|.-+
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 999986 34567778889999999999999999999999999999877544
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-16 Score=154.89 Aligned_cols=132 Identities=14% Similarity=0.219 Sum_probs=89.4
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCe-eEeecCCCCHHHHHHHHHHHhcCCC-eEEEEeCccccCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT-VSATHGDMDQNSRDIIMREFRSGSS-RVLITTDLLARGIDVQQ 347 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~vli~t~~~~~G~d~~~ 347 (413)
+..+++. .++++|||++|.+.++.+++.+...... ....++..+ +.+.++.|+.+.- .+++++..+.+|+|+|+
T Consensus 471 i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 3333344 3458999999999999999999876552 344454444 4477788876544 89999999999999996
Q ss_pred --CCEEEEcCCCC------------------------------ChhHHHhhhcccCCCCCcceEEEEeccc--cHHHHHH
Q 015093 348 --VSLVINYDLPT------------------------------QPENYLHRIGRSGRFGRKGVAINFVTRD--DDRMLAD 393 (413)
Q Consensus 348 --~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~--~~~~~~~ 393 (413)
++.||+++.|. ....+.|.+||+.|...+.-++++++.. ....-+.
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~ 626 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKL 626 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHH
Confidence 67888888764 2344689999999975554444444433 2223445
Q ss_pred HHHHhccccccC
Q 015093 394 IQRFYNVVIEEL 405 (413)
Q Consensus 394 ~~~~~~~~~~~~ 405 (413)
+-+.+.......
T Consensus 627 l~~~l~~~~~~~ 638 (654)
T COG1199 627 LLDSLPPFPKSK 638 (654)
T ss_pred HHHhCCCCcccc
Confidence 555555444433
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-18 Score=120.00 Aligned_cols=78 Identities=47% Similarity=0.818 Sum_probs=75.3
Q ss_pred HHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCC
Q 015093 297 DQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 374 (413)
Q Consensus 297 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 374 (413)
+.|++.++.+..+||+++..+|.++++.|++++..|||+|+++++|+|+|.+++||++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999976
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-16 Score=153.57 Aligned_cols=322 Identities=16% Similarity=0.121 Sum_probs=187.7
Q ss_pred CCCcHHHHhhhhhhhC----C----CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 61 EKPSAIQQRGIVPFCK----G----LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~----~----~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
..-..+|-+|++.+.. . =-++..|.||+|||++= .-|+..+.....+.+..|..-.+.|.-|+-+.+++-.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCCCCCceEEEEccccceeccchHHHHHhc
Confidence 3566799999988765 1 12677999999999875 4455556666667788888888999888888887654
Q ss_pred cccCceEEEEECCcchHHHH-------------------------------------------HHHh--------cCCcE
Q 015093 133 DYMGVKVHACVGGTSVREDQ-------------------------------------------RILS--------AGVHV 161 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~--------~~~~I 161 (413)
...+....++.|+.....-. ..+. -..++
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 43344444444432211000 0000 12479
Q ss_pred EEeChHHHHHHHHcCC--------CCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHH
Q 015093 162 VVGTPGRVFDMLRRQS--------LRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITR 232 (413)
Q Consensus 162 ii~T~~~l~~~~~~~~--------~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~ 232 (413)
+|+|++.++....... +.+. -+.||+||+|-+ +..-...+.+++.... -+.++++||||+++.....+.
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La-~svlVlDEVHaY-D~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLM-SSDLILDEPDDY-EPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhc-CCCEEEECCccC-CHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 9999999987663211 1122 268999999964 3322333444444221 257799999999976654332
Q ss_pred -----------HhcCCC---EEEEec---CCccc--------------------------cCCceE--EEEEeCccc---
Q 015093 233 -----------KFMNKP---VRILVK---RDELT--------------------------LEGIKQ--FHVNVDKEE--- 264 (413)
Q Consensus 233 -----------~~~~~~---~~~~~~---~~~~~--------------------------~~~~~~--~~~~~~~~~--- 264 (413)
...+.+ ..+-.. ..... ...... ....++...
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 222221 111110 00000 000111 111111111
Q ss_pred -cHHHH--------HHHHHHhc----C-CC-c---EEEEEcCcccHHHHHHHHhhC------CCeeEeecCCCCHHHHHH
Q 015093 265 -WKLDT--------LCDLYETL----A-IT-Q---SVIFVNTRRKVDWLTDQMRSR------DHTVSATHGDMDQNSRDI 320 (413)
Q Consensus 265 -~~~~~--------l~~~~~~~----~-~~-~---~lIf~~~~~~a~~l~~~l~~~------~~~~~~~~~~~~~~~r~~ 320 (413)
..... +..+...+ + .+ + .+|-+++++.+-.+++.|-+. .+.+.+||+......|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 11111 11222222 1 12 2 488888888888888887654 245778999987777776
Q ss_pred HHHHH----------------------hc----CCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCC
Q 015093 321 IMREF----------------------RS----GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 374 (413)
Q Consensus 321 ~~~~f----------------------~~----~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 374 (413)
+++.+ .+ +...|+|+|++.+.|+|+ +.+.+| .-+.+..+++|++||+.|.+
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhcccccc
Confidence 65543 11 356799999999999999 556554 34567899999999999987
Q ss_pred Cc--ceEEEEeccccH
Q 015093 375 RK--GVAINFVTRDDD 388 (413)
Q Consensus 375 ~~--g~~~~~~~~~~~ 388 (413)
.. +..-+++...+.
T Consensus 881 ~~~~~~~N~~i~~~N~ 896 (1110)
T TIGR02562 881 LEKVQQPNIVILQWNY 896 (1110)
T ss_pred cCCCCCCcEEEeHhHH
Confidence 52 333344444333
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-16 Score=137.20 Aligned_cols=118 Identities=16% Similarity=0.255 Sum_probs=97.4
Q ss_pred CcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEE-EEeCccccCCCCCCCCEEEEcCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG-SSRVL-ITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-i~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
-|.+||.+-....+.+.=.|.+.|+.++-+.|+|++..|...++.|.++ .++|+ ++-.+.+..+|+....+|+++++=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4678888887777778778888999999999999999999999999875 45555 555788888999999999999999
Q ss_pred CChhHHHhhhcccCCCCC--cceEEEEeccccHH-HHHHHHHH
Q 015093 358 TQPENYLHRIGRSGRFGR--KGVAINFVTRDDDR-MLADIQRF 397 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~-~~~~~~~~ 397 (413)
|++.--+|...|+.|.|+ +-+++.|+-+...+ .+-.+++.
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH
Confidence 999999999999999986 56777787776554 33344443
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-16 Score=150.74 Aligned_cols=310 Identities=16% Similarity=0.212 Sum_probs=208.0
Q ss_pred CcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH-HHhhcccCceEE
Q 015093 63 PSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM-RALGDYMGVKVH 140 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~-~~~~~~~~~~~~ 140 (413)
..++|..+++.+-+ +++++|.+|+|||||.++-++++. .....+++++.|..+.+..+++.+ +++....|..+.
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 37889999988765 456999999999999998776655 333559999999999988877777 556666788888
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC------cHHHHHHHHhhCCCCc
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG------FKDQIYDIFQHLPGKI 214 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~------~~~~~~~~~~~~~~~~ 214 (413)
.++|....... +....+|+|+||+++... . ..+.+++.|.||.|.+.+.. ... +..+..++.+..
T Consensus 1220 ~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~i 1290 (1674)
T KOG0951|consen 1220 KLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKI 1290 (1674)
T ss_pred ecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhhe
Confidence 88887764332 234469999999999755 2 44568999999999876321 112 566677777889
Q ss_pred eEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc--ccc-----HHHHHHHHHHh-cCCCcEEEEE
Q 015093 215 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK--EEW-----KLDTLCDLYET-LAITQSVIFV 286 (413)
Q Consensus 215 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~l~~~~~~-~~~~~~lIf~ 286 (413)
+++++|....+. .+. .++.....+.. ....++.........++. ... .-..+..+... ..+++.+||+
T Consensus 1291 r~v~ls~~lana-~d~--ig~s~~~v~Nf-~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1291 RVVALSSSLANA-RDL--IGASSSGVFNF-SPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFL 1366 (1674)
T ss_pred eEEEeehhhccc-hhh--ccccccceeec-CcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEe
Confidence 999999887543 333 12212111222 222222222222222221 111 11112222221 1456899999
Q ss_pred cCcccHHHHHHHHhh----------------------CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 287 NTRRKVDWLTDQMRS----------------------RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 287 ~~~~~a~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
|++++|..++..|-. ....+.+=|.+++..+....-..|..|.+.|+|...- ..|+-
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~ 1445 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTK 1445 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccc
Confidence 999999887765521 0123333388899999999999999999999998876 88877
Q ss_pred CCCCCEEEEcC-----------CCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 345 VQQVSLVINYD-----------LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 345 ~~~~~~vi~~~-----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
... +.||.++ .+.+.....|+.|++.| .|+|++++..+..+.++.+
T Consensus 1446 ~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1446 LKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred ccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 743 3343322 24567889999999999 5789999988887765543
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-15 Score=147.90 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 58 YGFEKPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
+.|..+||.|.+.... +..++++++.+|||+|||++.+.+++..........++++.+.|.+-..|..+++++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 4566779999877655 4557889999999999999999988886654444468999999999999999999884
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=145.75 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc--CCCeEE-EEeCcc
Q 015093 266 KLDTLCDLYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS--GSSRVL-ITTDLL 339 (413)
Q Consensus 266 ~~~~l~~~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vl-i~t~~~ 339 (413)
+...+..+++.. ...+++|...=......+..++++.|.....++|.....+|+.+++.|.. |..+|+ ++-.+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 444444444333 45677777766666778889999999999999999999999999999975 434555 445788
Q ss_pred ccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEE--EeccccH
Q 015093 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN--FVTRDDD 388 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~~ 388 (413)
+.|+|+-+.+|+|+++.-|++.--.|...|+.|.|+...+++ |......
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTv 860 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTV 860 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcH
Confidence 999999999999999999999999999999999998655443 4444443
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-14 Score=141.70 Aligned_cols=106 Identities=19% Similarity=0.329 Sum_probs=76.1
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHh----cCCCeEEEEeCccccCCCCCC--CCEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFR----SGSSRVLITTDLLARGIDVQQ--VSLV 351 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vli~t~~~~~G~d~~~--~~~v 351 (413)
..+.++|+++|.+..+.+++.|....-......+.. .+.++++.|+ .++..||++|..+.+|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 345689999999999999999975321223444432 4677777776 467789999999999999996 7889
Q ss_pred EEcCCCCC------------------------------hhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 352 INYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 352 i~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
|+.+.|.. ...+.|.+||.-|...+.-+++++++.
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 98887641 113579999999986554445555443
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-15 Score=143.85 Aligned_cols=293 Identities=12% Similarity=0.077 Sum_probs=169.9
Q ss_pred EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchH----HHHHHHh
Q 015093 81 IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVR----EDQRILS 156 (413)
Q Consensus 81 lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (413)
+..+.+|||||.+|+-.+.+.+..++ .+||++|.+.|..|+.+.++..+. +..+..++++.... .+.....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 44444699999999888877776543 899999999999999999988663 25677788766544 3444455
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-----cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHH
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-----FKDQIYDIFQHLPGKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 231 (413)
+...|+|+|-..++ ..+.++++||+||=|.-.... +...--.+.+....++.+|+.||||+-+.....
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 67899999976664 456678999999999743221 233333344444557889999999985544333
Q ss_pred HHhcCCCEEEEecCCccccCCceEEEEEe-----Cccc---cHHHHHHHHH-HhcCCCcEEEEEcCcccHHHH-HHHHhh
Q 015093 232 RKFMNKPVRILVKRDELTLEGIKQFHVNV-----DKEE---WKLDTLCDLY-ETLAITQSVIFVNTRRKVDWL-TDQMRS 301 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~l~~~~-~~~~~~~~lIf~~~~~~a~~l-~~~l~~ 301 (413)
...................+.+....... +... .-...+.+.+ +....+++|||.|.+-.+-.+ |..+..
T Consensus 312 ~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~ 391 (665)
T PRK14873 312 ESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACARCRT 391 (665)
T ss_pred hcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcC
Confidence 22211111111111111122222221110 0000 0112233333 333344999999988665543 333321
Q ss_pred ------CCCeeE---------eecCCC--------------------C------------------HHHHHHHHHHHhcC
Q 015093 302 ------RDHTVS---------ATHGDM--------------------D------------------QNSRDIIMREFRSG 328 (413)
Q Consensus 302 ------~~~~~~---------~~~~~~--------------------~------------------~~~r~~~~~~f~~~ 328 (413)
++.... .++.+. . ..+++.+++.|. +
T Consensus 392 ~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~l~~~~-~ 470 (665)
T PRK14873 392 PARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQVVDTVD-A 470 (665)
T ss_pred eeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChHHHHHhhc-c
Confidence 110000 000000 0 012345677776 4
Q ss_pred CCeEEEEeC----ccccCCCCCCCCEEEEcCCCC------------ChhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 329 SSRVLITTD----LLARGIDVQQVSLVINYDLPT------------QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 329 ~~~vli~t~----~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
+.+|||+|+ ++. +++..|+.++... ....+.|..||+||.++.|.+++.. ..+...+.
T Consensus 471 ~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~~~~~~ 544 (665)
T PRK14873 471 GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESSLPTVQ 544 (665)
T ss_pred CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCCCHHHH
Confidence 899999999 555 3556665544321 2345689999999998899999885 54444443
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-15 Score=142.13 Aligned_cols=125 Identities=19% Similarity=0.251 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC--eEEEEeCccc
Q 015093 265 WKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS--RVLITTDLLA 340 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~ 340 (413)
.|+..|..++.+. .+.++|||..-.+..+.+-..|+-+|+-...+.|.++.++|+...+.|+.+.. .+|++|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 4667777777665 55799999999999999999999999999999999999999999999998753 4678899999
Q ss_pred cCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEeccccHH
Q 015093 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDDR 389 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~ 389 (413)
.|||+.+.+.||+||..|++.--.|.-.|+.|.|+. -..|.++++...+
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 999999999999999999999999999999998875 4566677766443
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-16 Score=141.82 Aligned_cols=125 Identities=21% Similarity=0.306 Sum_probs=105.9
Q ss_pred cHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCe-EEEEeCcccc
Q 015093 265 WKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR-VLITTDLLAR 341 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vli~t~~~~~ 341 (413)
.++..|..++.+. .+.++|+|.+-.+....+-++|.-+++....+.|.....+|..++.+|+...+- +|++|.+.+.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 3555566666554 456899999999999999999999999999999999999999999999986554 5688999999
Q ss_pred CCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc--eEEEEeccccHH
Q 015093 342 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRDDDR 389 (413)
Q Consensus 342 G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~ 389 (413)
|||+...+.||+++..|++..-.|.+.|++|.|+.. .++.++.....+
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHH
Confidence 999999999999999999999999999999999754 466667766554
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-14 Score=143.40 Aligned_cols=285 Identities=15% Similarity=0.138 Sum_probs=168.3
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh-
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS- 156 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 156 (413)
+..+|+.-+|||||++....+- .+......+++++||.++.|-.|+.+.+..+........ ...+.....+.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 4599999999999998755443 333335567999999999999999999999876443322 2233333344444
Q ss_pred cCCcEEEeChHHHHHHHHcCC-C-CCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHH-HHH
Q 015093 157 AGVHVVVGTPGRVFDMLRRQS-L-RPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEI-TRK 233 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~-~-~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~-~~~ 233 (413)
....|++||.++|........ . ....--+||+||||+.-.. .....+...++ +...+++|+||....... ...
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G---~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~~ 424 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG---ELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTKD 424 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc---HHHHHHHHHhc-cceEEEeeCCccccccccchhh
Confidence 334899999999988776541 1 1222347999999986433 33333333444 467899999996432222 244
Q ss_pred hcCCCEEEEecCCccccCCceEEEEEeC----ccc---------------------------------------c-HHHH
Q 015093 234 FMNKPVRILVKRDELTLEGIKQFHVNVD----KEE---------------------------------------W-KLDT 269 (413)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---------------------------------------~-~~~~ 269 (413)
.++..++.+..........+-...+... ... . ....
T Consensus 425 ~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 425 VFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 4555444443332222111111111100 000 0 0000
Q ss_pred ---HHH-HHH-hcCCCcEEEEEcCcccHHHHHHHHhhCCCe----------eEee-------------cCCCCHHHHHHH
Q 015093 270 ---LCD-LYE-TLAITQSVIFVNTRRKVDWLTDQMRSRDHT----------VSAT-------------HGDMDQNSRDII 321 (413)
Q Consensus 270 ---l~~-~~~-~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~----------~~~~-------------~~~~~~~~r~~~ 321 (413)
+.. +.+ .....++++.++++..+..+++........ +..+ |.. ....+...
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhh
Confidence 111 111 223457888888888555555554332100 0000 111 12223334
Q ss_pred HHHH--hcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC
Q 015093 322 MREF--RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 322 ~~~f--~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
...| .....++||.++++-+|+|.|.++++.. +-|.-....+|.+.|+.|.
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccceEEe-ccccccchHHHHHHHhccC
Confidence 4443 4567899999999999999999998865 5557778999999999996
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=108.53 Aligned_cols=81 Identities=41% Similarity=0.752 Sum_probs=77.1
Q ss_pred HHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC
Q 015093 294 WLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 294 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
.+++.|+..++.+..+||+++..+|.++++.|+++...++++|+++++|+|+|.+++||+++++++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 015093 374 G 374 (413)
Q Consensus 374 g 374 (413)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-14 Score=135.62 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhh----------------------CCCeeEeecCCCCHHHHHHH
Q 015093 266 KLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRS----------------------RDHTVSATHGDMDQNSRDII 321 (413)
Q Consensus 266 ~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~ 321 (413)
+.-.|+++++.. -+.+.|||.+|......+-.+|.- .|.....+.|.....+|+++
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344556666544 456899999999998888888752 25567788899999999999
Q ss_pred HHHHhcCC----CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEecccc
Q 015093 322 MREFRSGS----SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDD 387 (413)
Q Consensus 322 ~~~f~~~~----~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~ 387 (413)
.+.|++.. .-.||+|.+.+.|+|+-.++-||+++..|++..-.|.+=|+.|.|+. -++|.|+....
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGT 1278 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGT 1278 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhccc
Confidence 99998642 23889999999999999999999999999999999999999999974 55555565543
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-13 Score=129.01 Aligned_cols=290 Identities=12% Similarity=0.103 Sum_probs=180.0
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
.-.+|.+|+|||||.+.+-++.+.+. ..+.+++++..+++|+.+....++...-. +.. .+...+.. .....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv-~Y~d~~~~-----~i~~~ 120 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV-NYLDSDDY-----IIDGR 120 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce-eeeccccc-----ccccc
Confidence 33789999999999877655554432 23458999999999999999988764221 211 11111110 00012
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH-------HHHHHHHhhCCCCceEEEEeeeCChhHHHH
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK-------DQIYDIFQHLPGKIQVGVFSATMPPEALEI 230 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~-------~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~ 230 (413)
..+-++.+.++|.+... ..+.++++||+||+-.....-+. ..+..+...+.+...+|++-|++.....++
T Consensus 121 ~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred ccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 35788888888865432 23455899999999876543222 223333444456778999999999988888
Q ss_pred HHHhcCCCEEEEecCCccccC--CceEEEEE---------------------------------eCccccHHHHHHHHHH
Q 015093 231 TRKFMNKPVRILVKRDELTLE--GIKQFHVN---------------------------------VDKEEWKLDTLCDLYE 275 (413)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~ 275 (413)
+..+.+......+..+...+. .-...... .............++.
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 888765433222211111100 00000000 0000112233334444
Q ss_pred hc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC--CCEEE
Q 015093 276 TL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVI 352 (413)
Q Consensus 276 ~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~--~~~vi 352 (413)
.. .++++.||+.+...++.+++..+.....+..++|.-+.. ++ + .-++.+|++-|+++..|+++.. .+.++
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~--~W~~~~VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-E--SWKKYDVVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-c--cccceeEEEEeceEEEEeccchhhceEEE
Confidence 43 456788999999999999999998888888888875544 22 2 2567999999999999999864 44454
Q ss_pred EcCCC----CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 353 NYDLP----TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 353 ~~~~~----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.+-.| .+..+..|++||+..- .....+++++..
T Consensus 352 ~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 352 AYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 43222 3455689999999544 456777777654
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-14 Score=107.66 Aligned_cols=136 Identities=21% Similarity=0.233 Sum_probs=80.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
+|+-.++-.++|+|||.-.+..++...... +.++||+.||+.++..+.+.++.. + +.....-.. . ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~----~--~~~~t~~~~-~----~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL----P--VRFHTNARM-R----TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS----S--EEEESTTSS--------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC----C--cccCceeee-c----cc
Confidence 455678999999999987665554433222 349999999999998877766543 2 222221110 0 11
Q ss_pred hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC--CCCceEEEEeeeCChhH
Q 015093 156 SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL--PGKIQVGVFSATMPPEA 227 (413)
Q Consensus 156 ~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~lSAT~~~~~ 227 (413)
..+..|-++|+..+.+.+.+ +....++++||+||||.. +.... .....+..+ ....++|++||||+...
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sI-A~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSI-AARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHH-HHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHH-hhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 34567899999999888876 556778999999999963 33211 111122222 12468999999998654
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-11 Score=109.92 Aligned_cols=290 Identities=14% Similarity=0.191 Sum_probs=200.4
Q ss_pred ccCceeEEEEcccHHHHHHHHHHHHHhhccc-------------Cce-------EEEEECCcchHHHHHHHh--------
Q 015093 105 ESLQCQALVLAPTRELAQQIEKVMRALGDYM-------------GVK-------VHACVGGTSVREDQRILS-------- 156 (413)
Q Consensus 105 ~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~-------------~~~-------~~~~~~~~~~~~~~~~~~-------- 156 (413)
+-..++|||++|++..|-++.+.+.++.... +.. ...........+....+.
T Consensus 34 GftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Fr 113 (442)
T PF06862_consen 34 GFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFR 113 (442)
T ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEE
Confidence 3456899999999999999888887765431 100 000000111112222221
Q ss_pred ----------------cCCcEEEeChHHHHHHHHc------CCCCCCCccEEEEccchhhh--ccCcHHHHHHHHhhCCC
Q 015093 157 ----------------AGVHVVVGTPGRVFDMLRR------QSLRPDYIRMFVLDEADEML--SRGFKDQIYDIFQHLPG 212 (413)
Q Consensus 157 ----------------~~~~Iii~T~~~l~~~~~~------~~~~~~~~~~iIiDE~h~~~--~~~~~~~~~~~~~~~~~ 212 (413)
..+||||++|=.|...+.. ..-.++.+.++|+|.+|.+. +|.....+.+.++..|.
T Consensus 114 lGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 114 LGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred EeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCC
Confidence 2469999999999887764 12236678999999999866 44444555555666554
Q ss_pred C---------------------ceEEEEeeeCChhHHHHHHHhcCCCE---EEEecCC-----ccccCCceEEEEEeCcc
Q 015093 213 K---------------------IQVGVFSATMPPEALEITRKFMNKPV---RILVKRD-----ELTLEGIKQFHVNVDKE 263 (413)
Q Consensus 213 ~---------------------~~~i~lSAT~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~ 263 (413)
. .|.+++|+...++...+....+.+.. .+..... ......+.+.+..++..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 2 58999999999999888887554422 1222222 12334566666665432
Q ss_pred c------cHHH----HHHHHHH-hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 264 E------WKLD----TLCDLYE-TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 264 ~------~~~~----~l~~~~~-~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
. .... .+..-+. ....+.+|||+||.-+-..+.++|++.+.....++.-++..+-...-..|.+|+.++
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 1 1111 1222223 445578999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcc--ccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCC------CcceEEEEeccccHHHHHHH
Q 015093 333 LITTDLL--ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG------RKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 333 li~t~~~--~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g------~~g~~~~~~~~~~~~~~~~~ 394 (413)
|+.|.-+ -.-..+.++++||++++|..+.-|-..+.-..... ....|.++++.-|.-.++.+
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999843 35677889999999999999988877775544432 25789999998887766655
|
; GO: 0005634 nucleus |
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=124.92 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=93.3
Q ss_pred HHHhhhhhhh-------------CCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHH
Q 015093 66 IQQRGIVPFC-------------KGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 66 ~Q~~~~~~~~-------------~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
||.+++..+. ..+.++++.++|+|||..++..+......... ...+||+||. .+..||.+++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 4666666552 33569999999999998886655432222221 1259999999 888999999999
Q ss_pred hhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHH--------HHHHcCCCCCCCccEEEEccchhhhccCcHHH
Q 015093 131 LGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVF--------DMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQ 202 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~--------~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~ 202 (413)
+......++....+...............+++|+|++.+. ..+.. .++++||+||+|.+.+. ...
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~~--~s~ 152 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKNK--DSK 152 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTTT--TSH
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccccc-----ccceeEEEecccccccc--ccc
Confidence 9865556777776665111211112345789999999998 22222 23799999999998433 333
Q ss_pred HHHHHhhCCCCceEEEEeeeCChh
Q 015093 203 IYDIFQHLPGKIQVGVFSATMPPE 226 (413)
Q Consensus 203 ~~~~~~~~~~~~~~i~lSAT~~~~ 226 (413)
....+..+. ...++++||||..+
T Consensus 153 ~~~~l~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 153 RYKALRKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp HHHHHHCCC-ECEEEEE-SS-SSS
T ss_pred ccccccccc-cceEEeeccccccc
Confidence 334444454 56688899998653
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=134.26 Aligned_cols=322 Identities=20% Similarity=0.206 Sum_probs=207.3
Q ss_pred CCCcHHHHhhhhhhhC-----CCcEEEeCCCCCchhHHHHHHHHHhcccccC-ceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 61 EKPSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYESL-QCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~-----~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~-~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
..+++||.+.++.+.. +.+.++...+|.|||...+..+...+..... .+..+++||+ ++..+|.+++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 4789999999977552 5668889999999998887666553333222 3589999997 5577799999888775
Q ss_pred cCceEEEEECCcc-----hHHHHHHHhc----CCcEEEeChHHHHHHH-HcCCCCCCCccEEEEccchhhhccCcHHHHH
Q 015093 135 MGVKVHACVGGTS-----VREDQRILSA----GVHVVVGTPGRVFDML-RRQSLRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 135 ~~~~~~~~~~~~~-----~~~~~~~~~~----~~~Iii~T~~~l~~~~-~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
... +...+|... .......... ..+++++|++.+.... ....+....+..+|+||+|.+.+.. .....
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHH
Confidence 543 555555553 1122222222 2689999999998743 1222334457899999999975543 22222
Q ss_pred HHHhhCCCCceEEEEeeeCCh-hHHHHH---H----------------HhcCCCEEEEec--------------------
Q 015093 205 DIFQHLPGKIQVGVFSATMPP-EALEIT---R----------------KFMNKPVRILVK-------------------- 244 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~~-~~~~~~---~----------------~~~~~~~~~~~~-------------------- 244 (413)
.+. .+.... .+.+|+||-. .+.++. . ..+..+......
T Consensus 494 ~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 494 ALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 222 333222 3667888721 110000 0 000000000000
Q ss_pred -------CC-----ccc-------------------------------------cCC----------------------c
Q 015093 245 -------RD-----ELT-------------------------------------LEG----------------------I 253 (413)
Q Consensus 245 -------~~-----~~~-------------------------------------~~~----------------------~ 253 (413)
.. ... ... +
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 00 000 000 0
Q ss_pred eEEEEEe-Cc---------------------------cc-cHHHHHHHHH-Hh--cCCC--cEEEEEcCcccHHHHHHHH
Q 015093 254 KQFHVNV-DK---------------------------EE-WKLDTLCDLY-ET--LAIT--QSVIFVNTRRKVDWLTDQM 299 (413)
Q Consensus 254 ~~~~~~~-~~---------------------------~~-~~~~~l~~~~-~~--~~~~--~~lIf~~~~~~a~~l~~~l 299 (413)
....... .. .. .+...+..++ .. ..+. ++++|.+......-+...+
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 0000000 00 00 4556666666 22 2334 8999999999999999999
Q ss_pred hhCCCeeEeecCCCCHHHHHHHHHHHhcC--CCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc
Q 015093 300 RSRDHTVSATHGDMDQNSRDIIMREFRSG--SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 377 (413)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 377 (413)
+..++....++|.++...|...++.|.++ ..-+++++.+.+.|+|+...++||++++.|++....|...|+.|.|+..
T Consensus 732 ~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~ 811 (866)
T COG0553 732 KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811 (866)
T ss_pred HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcc
Confidence 99998899999999999999999999986 3445677789999999999999999999999999999999999998764
Q ss_pred e--EEEEecccc
Q 015093 378 V--AINFVTRDD 387 (413)
Q Consensus 378 ~--~~~~~~~~~ 387 (413)
. ++.+++...
T Consensus 812 ~v~v~r~i~~~t 823 (866)
T COG0553 812 PVKVYRLITRGT 823 (866)
T ss_pred eeEEEEeecCCc
Confidence 4 555555554
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-12 Score=124.55 Aligned_cols=314 Identities=19% Similarity=0.227 Sum_probs=195.4
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|+.+|.-.--.+ +..-+..+.||-|||+++.+|+.-.... +..+.+++..--|+..-.+++..+...+++++++
T Consensus 80 ~~~dVQliG~i~l--h~g~iaEM~TGEGKTL~atlp~ylnaL~---gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 80 RHFDVQLLGGIVL--HLGDIAEMRTGEGKTLVATLPAYLNALA---GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred ChhhHHHhhhhhh--cCCceeeeecCCchHHHHHHHHHHHhcC---CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 5666666554443 4456999999999999998877544333 3378888889999998899999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-cc------------C---
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SR------------G--- 198 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~------------~--- 198 (413)
...+......... -.|+|.++|.+.|- +.++.. ......+.+.|+||++.+. +. .
T Consensus 155 ~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~ 232 (822)
T COG0653 155 ILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSE 232 (822)
T ss_pred ccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCch
Confidence 9988865544433 45899999987762 222111 1122346788888888643 11 0
Q ss_pred cHHHHHHHHhhCCCC-----------------------------------------------------------------
Q 015093 199 FKDQIYDIFQHLPGK----------------------------------------------------------------- 213 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 213 (413)
....+..+...+...
T Consensus 233 ~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~e 312 (822)
T COG0653 233 LYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGE 312 (822)
T ss_pred HHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCe
Confidence 112222222111100
Q ss_pred ----------------------------------------------------ceEEEEeeeCChhHHHHHHHhcCCCEEE
Q 015093 214 ----------------------------------------------------IQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 214 ----------------------------------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (413)
.++.+||+|......++...|....+.+
T Consensus 313 v~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~i 392 (822)
T COG0653 313 VVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVI 392 (822)
T ss_pred EEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeec
Confidence 1333444444333333333332222222
Q ss_pred EecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHH
Q 015093 242 LVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD 319 (413)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~ 319 (413)
.....-.+.+. ..........+..++...++.. .++|+||-..+++..+.+.+.|.+.|++..++.......+-+
T Consensus 393 PTnrp~~R~D~---~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~ 469 (822)
T COG0653 393 PTNRPIIRLDE---PDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAE 469 (822)
T ss_pred cCCCcccCCCC---ccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHH
Confidence 22211111111 1111223345666666555443 667999999999999999999999999999999887744444
Q ss_pred HHHHHHhcCCC-eEEEEeCccccCCCCCCCC-----------EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 320 IIMREFRSGSS-RVLITTDLLARGIDVQQVS-----------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 320 ~~~~~f~~~~~-~vli~t~~~~~G~d~~~~~-----------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
.+.+ .|.. -|-|+|+++++|-|+.--. +||-...-.|...--|.-||+||.|-+|....|++-.|
T Consensus 470 Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 470 IIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 3333 3333 4779999999999985222 23333333344444599999999999999988887665
Q ss_pred H
Q 015093 388 D 388 (413)
Q Consensus 388 ~ 388 (413)
.
T Consensus 547 ~ 547 (822)
T COG0653 547 D 547 (822)
T ss_pred H
Confidence 4
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=107.44 Aligned_cols=70 Identities=23% Similarity=0.163 Sum_probs=56.1
Q ss_pred CCcHHHHh----hhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC---ceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQR----GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL---QCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~----~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~---~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
+||+.|.+ ++..+..|+++++.+|||+|||++++.+++..+..... +.+++|.++|.++..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999 55556678899999999999999999999865543332 238999999999988887777665
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=107.44 Aligned_cols=70 Identities=23% Similarity=0.163 Sum_probs=56.1
Q ss_pred CCcHHHHh----hhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC---ceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQR----GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL---QCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~----~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~---~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
+||+.|.+ ++..+..|+++++.+|||+|||++++.+++..+..... +.+++|.++|.++..|...++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 46999999 55556678899999999999999999999865543332 238999999999988887777665
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-09 Score=106.79 Aligned_cols=143 Identities=15% Similarity=0.233 Sum_probs=85.8
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-----hhc-cc---CceEEEEECCc--
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-----LGD-YM---GVKVHACVGGT-- 146 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-----~~~-~~---~~~~~~~~~~~-- 146 (413)
.++.+.++||+|||.+|+..+++.....+ ..++||+||+.++.+.+...+.. ... .+ .+....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 46999999999999999988887654433 45899999999998887766541 111 11 23333333322
Q ss_pred -----chHHHHHHHhc-------CCcEEEeChHHHHHHHH-cCC--------C--CCCC----ccEEEEccchhhhccCc
Q 015093 147 -----SVREDQRILSA-------GVHVVVGTPGRVFDMLR-RQS--------L--RPDY----IRMFVLDEADEMLSRGF 199 (413)
Q Consensus 147 -----~~~~~~~~~~~-------~~~Iii~T~~~l~~~~~-~~~--------~--~~~~----~~~iIiDE~h~~~~~~~ 199 (413)
......+.+.. ..+|+++|.++|..... ... . .... --+||+||.|++...
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 11122122221 36899999999865321 110 0 0001 137999999998432
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
...+..+ ..+.+.+ ++..|||.+.
T Consensus 217 ~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 3344444 4443333 5669999864
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=94.27 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=94.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
..|++.|.-+.-.+.+|+ ++.+.||-|||+++.+++.-.... +..+-|++.+..|+..-++++..+...+|+++.
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~ 150 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---GKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG 150 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEeccHHHhhccHHHHHHHHHHhhhccc
Confidence 389999999998887766 999999999999987766544443 348999999999999999999999999999999
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHH-HHHcCC------CCCCCccEEEEccchhhh
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFD-MLRRQS------LRPDYIRMFVLDEADEML 195 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~-~~~~~~------~~~~~~~~iIiDE~h~~~ 195 (413)
...++.......... .++|+++|...|.- .++..- .....+.++|+||+|.++
T Consensus 151 ~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 151 IITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999988755544443 36899999998864 343211 113557899999999865
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-09 Score=96.14 Aligned_cols=336 Identities=17% Similarity=0.192 Sum_probs=200.7
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEE-eCCCCCch--hHHHHHHHHHhcc----------------------------cccC
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQ-QAQSGTGK--TATFCSGILQQLD----------------------------YESL 107 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv-~~~tGsGK--T~~~~~~i~~~l~----------------------------~~~~ 107 (413)
.-..+++.|.+.+..+...++++. ....+.|+ +-.|++-+++++. .+-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 335899999999999999998654 44445565 3445555554441 1122
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCc-e--------E-EEEE---------------------CCcch--------
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGV-K--------V-HACV---------------------GGTSV-------- 148 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~-~--------~-~~~~---------------------~~~~~-------- 148 (413)
.+++|||||+++-|-...+.+..+..+.+- + . .-.. |.++.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 478999999999999888888877433211 0 0 0000 11000
Q ss_pred -HHHHHHH--hcCCcEEEeChHHHHHHHHcCC------CCCCCccEEEEccchhhhccCcH--HHHHHHHhhCCCC----
Q 015093 149 -REDQRIL--SAGVHVVVGTPGRVFDMLRRQS------LRPDYIRMFVLDEADEMLSRGFK--DQIYDIFQHLPGK---- 213 (413)
Q Consensus 149 -~~~~~~~--~~~~~Iii~T~~~l~~~~~~~~------~~~~~~~~iIiDE~h~~~~~~~~--~~~~~~~~~~~~~---- 213 (413)
..-.+.. -...+|+||+|=.|.-.+...+ -.++.+.++|+|.+|-+...+|. ..+...++..|..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCC
Confidence 0000111 1246999999999887776322 12455789999999987754433 3334444444432
Q ss_pred -----------------ceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEE---------eCc----c
Q 015093 214 -----------------IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVN---------VDK----E 263 (413)
Q Consensus 214 -----------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~----~ 263 (413)
.|.+++|+-..+........++.+.........-.....+.+.... +.. .
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 2444555554455544444444432211111111111011111111 111 0
Q ss_pred ccHHHH-HHHHHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 015093 264 EWKLDT-LCDLYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLL 339 (413)
Q Consensus 264 ~~~~~~-l~~~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~ 339 (413)
...... +..++.+. ....+||+.|+.-.-..+..++++..+....++.-.+...-...-+.|..|...||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 112211 12222222 23468999999999999999999988777777766666666677788899999999999744
Q ss_pred --ccCCCCCCCCEEEEcCCCCChhH---HHhhhcccCCCCC----cceEEEEeccccHHHHHHH
Q 015093 340 --ARGIDVQQVSLVINYDLPTQPEN---YLHRIGRSGRFGR----KGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 340 --~~G~d~~~~~~vi~~~~~~s~~~---~~Q~~GR~~R~g~----~g~~~~~~~~~~~~~~~~~ 394 (413)
-+-.++.+++.||++.+|..+.- ++.+++|..-.|+ .-.|.++|+.-|.-.+..+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 46788999999999999988754 4677777654442 3578888887776555544
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-08 Score=96.28 Aligned_cols=110 Identities=17% Similarity=0.281 Sum_probs=87.6
Q ss_pred CcEEEEEcCcccHHHHHHHHhhCC------------------CeeEeecCCCCHHHHHHHHHHHhcCC---CeEEEEeCc
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSRD------------------HTVSATHGDMDQNSRDIIMREFRSGS---SRVLITTDL 338 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~~------------------~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vli~t~~ 338 (413)
.++|||..+......+.+.|++.. .....+.|.++..+|++++.+|.+.. .-++++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 468899998888888888887541 22445677788899999999998642 247788999
Q ss_pred cccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 339 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
...|+|+-..+-+++++..|++..-.|.+-|+.|.|+..-|+++=--.|..
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~ 850 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNS 850 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhh
Confidence 999999988888888899999999999999999999877777665544443
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=104.95 Aligned_cols=313 Identities=16% Similarity=0.213 Sum_probs=184.5
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHH-hhcccCceEE
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVH 140 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~ 140 (413)
-.+-...+..+..+..++|.+.||.|||..+...+++.+..... ...+.+.-|++-.+.-..+++.+ .+...+..++
T Consensus 380 a~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 380 AQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 33445566666677889999999999999998888887765442 23567777877766666555532 2222222221
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh-ccCcHHHHHHHHhhCCCCceEEEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML-SRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
.... .....-...--|..+|.+-+++.++... ..+.++|+||+|+.- +..+...+.+-.........++++
T Consensus 460 y~vR-----f~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 460 YNVR-----FDSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred cccc-----ccccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 1110 0000001123588999999988887643 346789999999753 222333333323333346677788
Q ss_pred eeeCChhHHHH--------------------H-HHhcCCCEEEEecCCcc--------ccCCce----EEEEEeC-----
Q 015093 220 SATMPPEALEI--------------------T-RKFMNKPVRILVKRDEL--------TLEGIK----QFHVNVD----- 261 (413)
Q Consensus 220 SAT~~~~~~~~--------------------~-~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~----- 261 (413)
|||...+.... . ..+.....++....... ..+... ..-...+
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~ 611 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNE 611 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcc
Confidence 88875332111 1 11111111111000000 000000 0000000
Q ss_pred ---------cccc----HHHHHHH-HHHhcCCCcEEEEEcCcccHHHHHHHHhhC-------CCeeEeecCCCCHHHHHH
Q 015093 262 ---------KEEW----KLDTLCD-LYETLAITQSVIFVNTRRKVDWLTDQMRSR-------DHTVSATHGDMDQNSRDI 320 (413)
Q Consensus 262 ---------~~~~----~~~~l~~-~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~ 320 (413)
.... ..+.+.. +....-.+.+++|.+.=...-.++..|... .+.+...|+.....++.+
T Consensus 612 ~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrk 691 (1282)
T KOG0921|consen 612 STRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRK 691 (1282)
T ss_pred hhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhh
Confidence 0000 1111111 112223467899999888888888877643 356788899998888999
Q ss_pred HHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC------------------CCChhHHHhhhcccCCCCCcceEEEE
Q 015093 321 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINF 382 (413)
Q Consensus 321 ~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~ 382 (413)
+.+....|..+++.+|++.+..+.+.++..|++.+. -.|.....|+.||++|. ++|.|..+
T Consensus 692 vf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~l 770 (1282)
T KOG0921|consen 692 VFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHL 770 (1282)
T ss_pred ccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccc
Confidence 988888899999999999999988877777665332 13667789999999997 68999888
Q ss_pred ecc
Q 015093 383 VTR 385 (413)
Q Consensus 383 ~~~ 385 (413)
++.
T Consensus 771 cs~ 773 (1282)
T KOG0921|consen 771 CSR 773 (1282)
T ss_pred cHH
Confidence 765
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.6e-09 Score=98.38 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=55.5
Q ss_pred CCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCC--CCc-----------ceEEEEeccccHHHHHHH
Q 015093 328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF--GRK-----------GVAINFVTRDDDRMLADI 394 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--g~~-----------g~~~~~~~~~~~~~~~~~ 394 (413)
...+++++..++.+|||-|++=.++-+....|..+=.|.+||+.|. +.. ..-.+++...+......+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999899989999999999999994 122 233456666666666666
Q ss_pred HHHh
Q 015093 395 QRFY 398 (413)
Q Consensus 395 ~~~~ 398 (413)
++-.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5543
|
|
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-07 Score=83.93 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCC-------eeEeecCCCCHHHHHHHHHHH----hcCCCeEEEEe--CccccCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDH-------TVSATHGDMDQNSRDIIMREF----RSGSSRVLITT--DLLARGIDV 345 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f----~~~~~~vli~t--~~~~~G~d~ 345 (413)
++-+++|.||.+....+.+.+++.|+ +.+++...-+ -+.+++.+ ..|...+|++. .-+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 37799999999999999999987643 2233333322 23444444 34565677665 689999999
Q ss_pred CC--CCEEEEcCCCCC--------------------------------hhHHHhhhcccCCCCCcceEEEEecc
Q 015093 346 QQ--VSLVINYDLPTQ--------------------------------PENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 346 ~~--~~~vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
.+ .+.||+++.|.. ....-|.+||+-|+-++--++++++.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 86 888998887741 11246999999999877777777753
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=98.57 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=88.8
Q ss_pred CcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC-eEE-EEeCccccCCCCCCCCEEEEcCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS-RVL-ITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vl-i~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
.+++||++-..-+..+...|...++....+.|.++...|.+.+..|..+.. .++ ++..+...|+++..+.+|+..++-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 489999999999999998888889999999999999999999999986543 344 666899999999999999999999
Q ss_pred CChhHHHhhhcccCCCCCcceEEE
Q 015093 358 TQPENYLHRIGRSGRFGRKGVAIN 381 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~g~~~~ 381 (413)
|++....|.+-|+.|-|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999987654443
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-08 Score=83.12 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=103.4
Q ss_pred CCcHHHHhhhhhhh----------CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFC----------KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----------~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.+...|.+++-... .+..+++-..||.||.......|++.+..++ .+.+|++.+..|..+..+.++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--CceEEEECChhhhhHHHHHHHHh
Confidence 46777887775442 1345899999999999888777888776654 37999999999999999999987
Q ss_pred hcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC---CC---------CCCccEEEEccchhhhccCc
Q 015093 132 GDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS---LR---------PDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~---~~---------~~~~~~iIiDE~h~~~~~~~ 199 (413)
+.. .+.+..+..-.. .....-+..|+++||..|...-.... .. .+.=.+||+||||...+...
T Consensus 115 G~~-~i~v~~l~~~~~----~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKY----GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhhcc----CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 643 222222221000 00012245799999999977643211 11 11125899999999765432
Q ss_pred --------HHHHHHHHhhCCCCceEEEEeeeCChh
Q 015093 200 --------KDQIYDIFQHLPGKIQVGVFSATMPPE 226 (413)
Q Consensus 200 --------~~~~~~~~~~~~~~~~~i~lSAT~~~~ 226 (413)
...+..+.+.+| +.+++..|||.-.+
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred cCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 134555666676 56699999997543
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-08 Score=84.53 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=75.1
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH-------HHHHHHhh
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI-------EKVMRALG 132 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~-------~~~~~~~~ 132 (413)
+...+..|..+++++....-+++.||.|||||+.++..+++.+..+. ..+++++-|..+..+.. .+.+.-+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-YDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT----SS---------TTT
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34567899999999997788999999999999999999988877644 44888888877531110 00000000
Q ss_pred cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC
Q 015093 133 DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 212 (413)
...-.....+.+... ..... ....|-+.+...+. +-.+++ .+||+|||+++ ....+..++.+...
T Consensus 81 ~p~~d~l~~~~~~~~---~~~~~-~~~~Ie~~~~~~iR------Grt~~~-~~iIvDEaQN~----t~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 81 RPIYDALEELFGKEK---LEELI-QNGKIEIEPLAFIR------GRTFDN-AFIIVDEAQNL----TPEELKMILTRIGE 145 (205)
T ss_dssp HHHHHHHTTTS-TTC---HHHHH-HTTSEEEEEGGGGT------T--B-S-EEEEE-SGGG------HHHHHHHHTTB-T
T ss_pred HHHHHHHHHHhChHh---HHHHh-hcCeEEEEehhhhc------Cccccc-eEEEEecccCC----CHHHHHHHHcccCC
Confidence 000000000001111 11111 23345555544321 122222 79999999987 56778889999998
Q ss_pred CceEEEEeee
Q 015093 213 KIQVGVFSAT 222 (413)
Q Consensus 213 ~~~~i~lSAT 222 (413)
+.+++++.-+
T Consensus 146 ~skii~~GD~ 155 (205)
T PF02562_consen 146 GSKIIITGDP 155 (205)
T ss_dssp T-EEEEEE--
T ss_pred CcEEEEecCc
Confidence 8888865544
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-08 Score=84.61 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=50.9
Q ss_pred CcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhc-----ccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 63 PSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQL-----DYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l-----~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
|.+.|.+|+..++.... .+|.||+|+|||.+....+...+ .....+.++++++|+..-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67889999999999998 99999999999976554444432 1244566999999999999988888776
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-08 Score=80.84 Aligned_cols=111 Identities=22% Similarity=0.370 Sum_probs=74.8
Q ss_pred HHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCC--eeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC--ccccCCCCCC
Q 015093 272 DLYETLAITQSVIFVNTRRKVDWLTDQMRSRDH--TVSATHGDMDQNSRDIIMREFRSGSSRVLITTD--LLARGIDVQQ 347 (413)
Q Consensus 272 ~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~--~~~~G~d~~~ 347 (413)
++++..+ +.+|||++|.+..+.+.+.++.... ...++.. +..+..++++.|++++..||+++. .+.+|+|+|+
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 3444444 8999999999999999999987542 1122222 245688899999999999999998 9999999996
Q ss_pred --CCEEEEcCCCCCh------------------------------hHHHhhhcccCCCCCcceEEEEecc
Q 015093 348 --VSLVINYDLPTQP------------------------------ENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 348 --~~~vi~~~~~~s~------------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
++.||+.+.|... ....|.+||+-|..++--++++++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 7789998887411 1247999999998765545555544
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.7e-09 Score=100.98 Aligned_cols=259 Identities=17% Similarity=0.175 Sum_probs=151.8
Q ss_pred CcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 63 PSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
..|.|...+..+-. ..++++-+|||+|||.++-.+++..+.... +.+++++.|.++|+....+.+.......|+++.-
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 34456666654433 456999999999999999988887766555 4699999999999998888887765555888999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC--CCCCCccEEEEccchhhhccCcHHHHHHHH-------hhCCC
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS--LRPDYIRMFVLDEADEMLSRGFKDQIYDIF-------QHLPG 212 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~-------~~~~~ 212 (413)
++|+...+.. . -...+++|+||+++....+++. .....++.+|+||.|.+. .++...+..+. ...+.
T Consensus 1007 ~tgd~~pd~~-~--v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg-~~rgPVle~ivsr~n~~s~~t~~ 1082 (1230)
T KOG0952|consen 1007 LTGDVTPDVK-A--VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG-EDRGPVLEVIVSRMNYISSQTEE 1082 (1230)
T ss_pred ccCccCCChh-h--eecCceEEcccccccCccccccchhhhccccceeeccccccc-CCCcceEEEEeeccccCccccCc
Confidence 9888765411 1 2346899999999988887543 335668899999999664 33232221111 11122
Q ss_pred CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEE------EEeCccccHH-HHHHHHHHhcCCCcEEEE
Q 015093 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH------VNVDKEEWKL-DTLCDLYETLAITQSVIF 285 (413)
Q Consensus 213 ~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~l~~~~~~~~~~~~lIf 285 (413)
..+.+++|--+. +..++..+....+. +.. .....+..+.... ..++...... +.+..+....+..+++||
T Consensus 1083 ~vr~~glsta~~-na~dla~wl~~~~~-~nf-~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lif 1159 (1230)
T KOG0952|consen 1083 PVRYLGLSTALA-NANDLADWLNIKDM-YNF-RPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIF 1159 (1230)
T ss_pred chhhhhHhhhhh-ccHHHHHHhCCCCc-CCC-CcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEE
Confidence 345555554432 34444444433332 111 0011111111111 1111111122 333333344466899999
Q ss_pred EcCcccHHHHHHHH----hhCCCeeEeecCCCCHHHHHHHHHHHhcCCCe
Q 015093 286 VNTRRKVDWLTDQM----RSRDHTVSATHGDMDQNSRDIIMREFRSGSSR 331 (413)
Q Consensus 286 ~~~~~~a~~l~~~l----~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
+.++.+...-+..| ....-+..+++.+ ..+-+.++...++.+++
T Consensus 1160 v~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1160 VSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred eecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 99987654443333 3333334444433 55666666666665544
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=78.43 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=71.7
Q ss_pred CCcHHHHhhhhhhhCCC--cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~--~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
+|++-|.+++..++.++ -.++.|+.|+|||.+. ..+...+... +.++++++||...+....+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~~---------- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA--GKRVIGLAPTNKAAKELREKTG---------- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT--T--EEEEESSHHHHHHHHHHHT----------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC--CCeEEEECCcHHHHHHHHHhhC----------
Confidence 36788999999996544 4788999999999753 4455444443 4699999999887776544311
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC----CCCCccEEEEccchhhhccCcHHHHHHHHhhCCC-Cc
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL----RPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG-KI 214 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~----~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~-~~ 214 (413)
+-..|..+++........ .....++|||||+-.+ ....+..++...+. +.
T Consensus 68 ---------------------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 68 ---------------------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAKKSGA 122 (196)
T ss_dssp ---------------------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-T-T-
T ss_pred ---------------------cchhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHHhcCC
Confidence 112332222211111100 1344679999999977 34556677777766 56
Q ss_pred eEEEEeee
Q 015093 215 QVGVFSAT 222 (413)
Q Consensus 215 ~~i~lSAT 222 (413)
+++++.=+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 66654443
|
|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-05 Score=71.79 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=46.8
Q ss_pred CCCCCCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-CceeEEEEcccHHHHHHHHHHHHHh
Q 015093 58 YGFEKPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-LQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
+.++..+|-|.+-... +-.+.+.++.+|+|+|||.+.+..+......-. .-.+.++..-|..-.+....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 4555667777654433 344678999999999999887666654432222 2236677666666555566666544
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=86.25 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=58.7
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
...|++.||..+..-+..+.+....+..||+||||++........+.++++...+...+.++|+.|.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 3579999999999999999999999999999999998776666777788888777888999999996
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.5e-06 Score=79.04 Aligned_cols=76 Identities=21% Similarity=0.198 Sum_probs=61.5
Q ss_pred HHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 54 GIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 54 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.+...+.++|..-|..|+++++.+.-.||++|+|+|||.+....++. +.... ..++|+++|+.--++|.++.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyh-l~~~~-~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYH-LARQH-AGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHH-HHHhc-CCceEEEcccchhHHHHHHHHHhc
Confidence 44456778999999999999999999999999999999876444444 43333 458999999999899998888764
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=6e-07 Score=76.25 Aligned_cols=147 Identities=15% Similarity=0.074 Sum_probs=84.3
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH-------HHHHHHHH
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ-------QIEKVMRA 130 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~-------q~~~~~~~ 130 (413)
.++...+..|...+.++.++..+++.||+|+|||+.+...+++.+.... -.++++.-|.....+ ...+.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 4556778889999999988888999999999999998887776664433 346666666644211 01111111
Q ss_pred hhcccCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhh
Q 015093 131 LGDYMGVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQH 209 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~ 209 (413)
+....-.....+.+.. .....+. ....|-+..... ++-.. +. -++||+|||+++ -...+..++.+
T Consensus 134 ~~~pi~D~L~~~~~~~---~~~~~~~~~~~~Iei~~l~y----mRGrt--l~-~~~vIvDEaqn~----~~~~~k~~ltR 199 (262)
T PRK10536 134 YFRPVYDVLVRRLGAS---FMQYCLRPEIGKVEIAPFAY----MRGRT--FE-NAVVILDEAQNV----TAAQMKMFLTR 199 (262)
T ss_pred HHHHHHHHHHHHhChH---HHHHHHHhccCcEEEecHHH----hcCCc--cc-CCEEEEechhcC----CHHHHHHHHhh
Confidence 1110000000000111 1111111 123455555322 22222 23 279999999987 34777788899
Q ss_pred CCCCceEEEE
Q 015093 210 LPGKIQVGVF 219 (413)
Q Consensus 210 ~~~~~~~i~l 219 (413)
+..+.++|++
T Consensus 200 ~g~~sk~v~~ 209 (262)
T PRK10536 200 LGENVTVIVN 209 (262)
T ss_pred cCCCCEEEEe
Confidence 9888887753
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=78.33 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=67.7
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-++|.|.+|||||+.++..+... .....+.++++++++.+|.....+.+.+... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhcc----------------------cch
Confidence 37899999999998876555443 2233345899999999998877777665320 001
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-------cHHHHHHHHhh
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-------FKDQIYDIFQH 209 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-------~~~~~~~~~~~ 209 (413)
....+..+..+.............+++||+||||++.... ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1233444444443333222344558999999999987621 23555565555
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=59.81 Aligned_cols=52 Identities=33% Similarity=0.413 Sum_probs=38.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
++-++|.+|+|||||...+..+...+.. ...+.++++++|++..+++..+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3446679999999998776666665532 112558999999999998877776
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-06 Score=82.91 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=83.2
Q ss_pred CCcHHHHhhhhhhhC----CCcEEEeCCCCCchhHHHHHHHHHhc---c-----------c-------------------
Q 015093 62 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQL---D-----------Y------------------- 104 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~~~lv~~~tGsGKT~~~~~~i~~~l---~-----------~------------------- 104 (413)
+||+.|......+++ ..++++..|||+|||++.+-..+.-. . .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 789999877666554 56799999999999987653333211 0 0
Q ss_pred cc------CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcc-------------------------------
Q 015093 105 ES------LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTS------------------------------- 147 (413)
Q Consensus 105 ~~------~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 147 (413)
.. ..+++.+-.-|..-..|..+++++..-.. ++.++.....
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~v--kmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRV--KMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCCC--ceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 00 13567888888878888999998764322 2111111000
Q ss_pred -------------------hHH--------------HHHHHhcCCcEEEeChHHHHHHHHcCC--CCCCCccEEEEccch
Q 015093 148 -------------------VRE--------------DQRILSAGVHVVVGTPGRVFDMLRRQS--LRPDYIRMFVLDEAD 192 (413)
Q Consensus 148 -------------------~~~--------------~~~~~~~~~~Iii~T~~~l~~~~~~~~--~~~~~~~~iIiDE~h 192 (413)
+++ ..+.+...++||++.|+.|.+-..+.. .++.+ .+||+||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 000 011123457999999999987766554 45554 899999999
Q ss_pred hhh
Q 015093 193 EML 195 (413)
Q Consensus 193 ~~~ 195 (413)
++.
T Consensus 258 NiE 260 (945)
T KOG1132|consen 258 NIE 260 (945)
T ss_pred cHH
Confidence 864
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=98.33 E-value=7e-06 Score=79.61 Aligned_cols=139 Identities=18% Similarity=0.171 Sum_probs=85.7
Q ss_pred HHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc---ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 65 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY---ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 65 ~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~---~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
++|+.++..++.++-.+|.|++|+|||.+.. .++..+.. ...+.+++++.||---+..+.+.+.......+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 7899999999999999999999999997653 33333322 1112479999999877776666555432211110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc------CCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR------QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
. .. .....+-..|.++|+..... .......+++||+||+-.+ -...+..+++.++...+
T Consensus 224 ------~-~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 ------E-AL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPNTK 288 (586)
T ss_pred ------h-hh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCCCE
Confidence 0 00 01112335565555433211 0111224789999999966 34566678888888888
Q ss_pred EEEEeee
Q 015093 216 VGVFSAT 222 (413)
Q Consensus 216 ~i~lSAT 222 (413)
+|++.=.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 8865543
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.1e-06 Score=80.21 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=87.2
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc--ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~--~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.++|+.|+.....++-.+|.|++|+|||.+.. .++..+.. .....++.++.||---+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 48999999999998899999999999997753 33333322 1123478999999887777776665433222110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC------CCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ------SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
. .. ......-..|.++|+...... ....-.++++|+||+-.+ -...+..+++.+++..+
T Consensus 230 --~-----~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 --D-----EQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHAR 294 (615)
T ss_pred --h-----hh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCCE
Confidence 0 00 011112244555544322111 111223689999999965 35666678888888888
Q ss_pred EEEEeee
Q 015093 216 VGVFSAT 222 (413)
Q Consensus 216 ~i~lSAT 222 (413)
+|++.=.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 8877654
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=80.31 Aligned_cols=126 Identities=20% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
..+.+-|.+|+..+..++-.+|.|++|+|||.+. ..+++.+........++++.||-.-+..+.+. .+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~-------~g~~-- 391 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEV-------TGLT-- 391 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHh-------cCCc--
Confidence 4799999999999988888999999999999764 44444444332224788899997766533221 1110
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-----CCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-----SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
..|.++++...... .......++||+||++.+. ...+..+++.++.+.+
T Consensus 392 ----------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 392 ----------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHAR 445 (720)
T ss_pred ----------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCE
Confidence 11222222110000 0011236899999999762 3455677777887888
Q ss_pred EEEEeee
Q 015093 216 VGVFSAT 222 (413)
Q Consensus 216 ~i~lSAT 222 (413)
++++.=+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8876544
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=74.49 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=76.9
Q ss_pred EeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH-hhcccCceEEEEECCcchH----HHHHHHh
Q 015093 82 QQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA-LGDYMGVKVHACVGGTSVR----EDQRILS 156 (413)
Q Consensus 82 v~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~ 156 (413)
..++||||||++....|++...++- ...|+.|......+.+...+.. ....+=.+-....++..+. ...+-..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy--r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY--RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch--hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 5789999999998888887765543 4678888887777766554421 1000000000011111100 0011123
Q ss_pred cCCcEEEeChHHHHHHHHcC---CCCCC---Ccc-EEEEccchhhhccC-------------cHHHHHHHHhhCCCCceE
Q 015093 157 AGVHVVVGTPGRVFDMLRRQ---SLRPD---YIR-MFVLDEADEMLSRG-------------FKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~---~~~~~---~~~-~iIiDE~h~~~~~~-------------~~~~~~~~~~~~~~~~~~ 216 (413)
....|+++|.+.|...+.+. ...+. +.. +.+-||+|++-... |...+...++ ..++.-+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCCCcee
Confidence 45689999999998776442 22222 223 46779999974321 2222222222 2234557
Q ss_pred EEEeeeCCh
Q 015093 217 GVFSATMPP 225 (413)
Q Consensus 217 i~lSAT~~~ 225 (413)
+.+|||.+.
T Consensus 159 lef~at~~k 167 (812)
T COG3421 159 LEFSATIPK 167 (812)
T ss_pred ehhhhcCCc
Confidence 888999873
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.7e-05 Score=65.04 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=80.8
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhC---CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCK---GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
.|+....+.++.=.+... --+|+.|.+....+.+ |++.+.++-+|.|||.+. .|++..+..++. .-+.+++|
T Consensus 4 ~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~-~LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGS-RLVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCC-cEEEEEcC-
Confidence 455555666665555432 2689999999988876 467999999999999874 566666555543 36777777
Q ss_pred HHHHHHHHHHHHHhh-cccCceEEEEE--CCcch--H---HHH---HHHhcCCcEEEeChHHHHHHH
Q 015093 118 RELAQQIEKVMRALG-DYMGVKVHACV--GGTSV--R---EDQ---RILSAGVHVVVGTPGRVFDML 173 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~-~~~~~~~~~~~--~~~~~--~---~~~---~~~~~~~~Iii~T~~~l~~~~ 173 (413)
++|..|..+.+.+.. ...+-.+..+- ..... . ... ........|+++||+.+.++.
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 578999988886543 22333333222 11111 0 111 111234579999999987653
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.4e-06 Score=76.81 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=51.4
Q ss_pred CCcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
.+.+-|+.|+......++ .+|+||+|+|||.+....+...+..+ .++||..||..-+....+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHh
Confidence 577789999988887766 88999999999988766666555544 39999999998887777753
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1e-05 Score=71.09 Aligned_cols=145 Identities=15% Similarity=0.157 Sum_probs=90.4
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCc--EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
-+|+......|+-|++.++...- +.+.++.|||||+.++.+.++.....+...+++|.=|+....+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~d----------- 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGED----------- 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccc-----------
Confidence 46777788899999999987643 78899999999999999888887776666788888888765421
Q ss_pred cCceEEEEECCcchH--HHHHHHhcCCcEEE----eChHHHHHHHHcCCCCCCC----------ccEEEEccchhhhccC
Q 015093 135 MGVKVHACVGGTSVR--EDQRILSAGVHVVV----GTPGRVFDMLRRQSLRPDY----------IRMFVLDEADEMLSRG 198 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~~~~Iii----~T~~~l~~~~~~~~~~~~~----------~~~iIiDE~h~~~~~~ 198 (413)
++++-|....+ .|...+.+.-..+. ++.+.+...+....+.... -.+||+|||+.+
T Consensus 292 ----IGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---- 363 (436)
T COG1875 292 ----IGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---- 363 (436)
T ss_pred ----cCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----
Confidence 22222211110 01010100000111 1133444444333222111 158999999987
Q ss_pred cHHHHHHHHhhCCCCceEEEEe
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lS 220 (413)
-...+..++.+...+.++|++.
T Consensus 364 TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred CHHHHHHHHHhccCCCEEEEcC
Confidence 4567778899999888888644
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=71.43 Aligned_cols=122 Identities=23% Similarity=0.143 Sum_probs=77.4
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
|++-|.+++.. ..+.++|.|+.|||||.+.+.-+...+... -...+++++++|+..+.++.+++..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~--- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQE--- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC---
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccc---
Confidence 46789999988 677899999999999998877776666554 334589999999999999988888754332110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-CCCC-CCccEEEEccch
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-SLRP-DYIRMFVLDEAD 192 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-~~~~-~~~~~iIiDE~h 192 (413)
................+.|+|.+++...+.+. .... -.-.+-++|+..
T Consensus 76 ---~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 ---SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ---CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ---ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00000111122234578999999987654321 1111 112456777777
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-05 Score=60.75 Aligned_cols=92 Identities=14% Similarity=0.252 Sum_probs=59.3
Q ss_pred HHHHHHHHhhCCC----eeEeecCCCCHHHHHHHHHHHhcCCC---eEEEEeCc--cccCCCCCC--CCEEEEcCCCCC-
Q 015093 292 VDWLTDQMRSRDH----TVSATHGDMDQNSRDIIMREFRSGSS---RVLITTDL--LARGIDVQQ--VSLVINYDLPTQ- 359 (413)
Q Consensus 292 a~~l~~~l~~~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~--~~~G~d~~~--~~~vi~~~~~~s- 359 (413)
.+.+++.+++.+. ......+. ...+..++++.|++... .||+++.. +.||+|+|+ ++.||+.+.|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGK-DSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECC-CCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 4556666665432 12223232 22344678888876433 68888876 999999997 678888887631
Q ss_pred ------------------------------hhHHHhhhcccCCCCCcceEEEEec
Q 015093 360 ------------------------------PENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 360 ------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
...+.|.+||+-|...+--++++++
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1234799999999876654555554
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.6e-05 Score=59.51 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHhcCC-CeEEEEeCccccCCCCCC--CCEEEEcCCCCC-----------------------------
Q 015093 312 DMDQNSRDIIMREFRSGS-SRVLITTDLLARGIDVQQ--VSLVINYDLPTQ----------------------------- 359 (413)
Q Consensus 312 ~~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~~--~~~vi~~~~~~s----------------------------- 359 (413)
+.+..+..++++.|++.. ..||+++..+.+|+|+|+ ++.||+.+.|..
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344446788888898654 379999988999999996 678888876631
Q ss_pred --hhHHHhhhcccCCCCCcceEEEEec
Q 015093 360 --PENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 360 --~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
...+.|.+||+-|...+--++++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1235799999999876544444443
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.2e-05 Score=77.98 Aligned_cols=147 Identities=18% Similarity=0.067 Sum_probs=94.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhccc---------------ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDY---------------ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~---------------~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
|++++..-..|.|||..-+...+....+ -...+..|||||. ++..||.+++.+..... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 4568999999999998776555433211 1112468999996 88899999999876543 56666
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC--------------CCCCC------ccEEEEccchhhhccCcHH
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS--------------LRPDY------IRMFVLDEADEMLSRGFKD 201 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~--------------~~~~~------~~~iIiDE~h~~~~~~~~~ 201 (413)
..|-.........-...+||++|||+.|...+.... ..... +=-|++|||+.+.. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 665333222222223468999999999976653321 11110 11489999997633 456
Q ss_pred HHHHHHhhCCCCceEEEEeeeCChhHH
Q 015093 202 QIYDIFQHLPGKIQVGVFSATMPPEAL 228 (413)
Q Consensus 202 ~~~~~~~~~~~~~~~i~lSAT~~~~~~ 228 (413)
...+...+++ ....-++|+||-..+.
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Id 555 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKID 555 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhh
Confidence 6666667775 4557889999865433
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.5e-05 Score=58.78 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=13.7
Q ss_pred CCcEEEeCCCCCchhHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~ 96 (413)
++.++|.||+|+|||...-.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 45689999999999977643
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00013 Score=74.55 Aligned_cols=123 Identities=17% Similarity=0.096 Sum_probs=75.1
Q ss_pred CCcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 62 KPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.|++-|.+++..++.+++ ++|.|+.|+|||.+ +-.+...+.. .+.+++.+.||---+..+.+ ..++
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~L~e-------~tGi--- 412 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAENLEG-------GSGI--- 412 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHHHhh-------ccCc---
Confidence 699999999999998654 78999999999976 3444444433 24589999998665443221 1111
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC-CCCceEEEE
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL-PGKIQVGVF 219 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~l 219 (413)
--.|..+|..........+...++|||||+-.+. ...+..++... +.+.++|++
T Consensus 413 ---------------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 413 ---------------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred ---------------------chhhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhCCCEEEEE
Confidence 1123333322121222223446899999999763 33444555533 446777766
Q ss_pred eee
Q 015093 220 SAT 222 (413)
Q Consensus 220 SAT 222 (413)
.=+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 544
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.3e-05 Score=63.45 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=24.4
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
-.++.||+|+|||..++..+...... +.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 36889999999998776555444332 347787766
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00044 Score=69.59 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=44.7
Q ss_pred CCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.+++-|.+++..+..+ +-++|.|++|+|||... -.+.+.+.. .+.++++++||---+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--CCCeEEEEeCcHHHHHHH
Confidence 6899999999998875 55899999999999764 344444433 245899999986655443
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.001 Score=61.15 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=66.3
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
+.+++.||||+|||.+..-.+...... ...+.++.+++--..... ..+.++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a-a~eQL~~~a~~lgvpv~~--------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG-AKKQIQTYGDIMGIPVKA--------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH-HHHHHHHHhhcCCcceEe---------------
Confidence 458899999999998875444322211 112334444443221111 122355555544544321
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCCC-ceEEEEeeeCChh
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPGK-IQVGVFSATMPPE 226 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~-~~~i~lSAT~~~~ 226 (413)
+.+++.+...+.. ...+++|++|++.+..... ....+.+++...... -.++.+|||...+
T Consensus 239 ------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 ------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred ------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 2234445444433 2347899999999865321 224455555555432 4678899998743
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.9e-05 Score=64.87 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=32.8
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 180 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
...++++|+||||.+... -+..+.++....+...++++++.-++
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 444789999999987544 46677788888777777777766553
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00071 Score=69.80 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
+.++.........+ ..|++-|.+++..+..+ +-.+|.|+.|+|||.+. -.+.+.+.. .+.+++.+.||-.-+..+
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCCeEEEEcCcHHHHHHH
Confidence 34444444433333 37999999999988654 45899999999999764 445444433 245899999986655443
Q ss_pred HHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHH
Q 015093 125 EKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
.+. .++. -.|..+|.-........+..-++|||||+..+ -...+.
T Consensus 442 ~e~-------~Gi~------------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv----~~~~m~ 486 (1102)
T PRK13826 442 EKE-------AGIQ------------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAGMV----ASRQMA 486 (1102)
T ss_pred HHh-------hCCC------------------------eeeHHHHHhhhccCccCCCCCcEEEEECcccC----CHHHHH
Confidence 221 1221 12222221111111223344579999999976 344455
Q ss_pred HHHhhCC-CCceEEEEeee
Q 015093 205 DIFQHLP-GKIQVGVFSAT 222 (413)
Q Consensus 205 ~~~~~~~-~~~~~i~lSAT 222 (413)
.++...+ .+.++|++.=+
T Consensus 487 ~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 487 LFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHhcCCEEEEECCH
Confidence 5665554 46777766544
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.4e-06 Score=83.87 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=57.5
Q ss_pred HHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc-C--CCeEEEEeCccccC
Q 015093 268 DTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS-G--SSRVLITTDLLARG 342 (413)
Q Consensus 268 ~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~--~~~vli~t~~~~~G 342 (413)
..|...++.. .+.+++||..-++..+-+...+...+ ....+.|.....+|+..++.|+. + ..-+|.+|.+.+.|
T Consensus 618 ~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 618 TLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3344444433 45699999999999999999998888 88889999999999999999984 2 34578888876655
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00058 Score=53.97 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=23.2
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
++.+++.||+|+|||..+. .+...+... +..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~-~i~~~~~~~--~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR-AIANELFRP--GAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHhhcC--CCCeEEEehh
Confidence 5679999999999997543 333333211 2345555443
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=59.78 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=79.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++.+.++||||.|||.+..-.+.......+.....+|.+.|--.. .+++++.++.-+++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh--HHHHHHHHHHHhCCce-----------------
Confidence 556889999999999876544443331223233556666654332 3556777766555543
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcHHHHHHHHhhCCCCceEEEEeeeCCh-hHHHHHHHh
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFKDQIYDIFQHLPGKIQVGVFSATMPP-EALEITRKF 234 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~~~ 234 (413)
.++-+|..|...+.. +.++++|.+|=+-+- .+......+..++....+-.-.+.+|||... ++.+....+
T Consensus 264 ----~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 ----EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred ----EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 345566666555543 344689999977753 3444556666666666555557789999864 344444444
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=60.09 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=70.5
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-++++||||+|||.+..-.+.....+ +.++.+++--... ....++++.++...++.+.......+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~----------- 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYR-IGAVEQLKTYAEILGVPFYVARTESD----------- 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSS-THHHHHHHHHHHHHTEEEEESSTTSC-----------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCC-ccHHHHHHHHHHHhccccchhhcchh-----------
Confidence 36889999999998875544443323 3355555543222 22345566666555655443221111
Q ss_pred CcEEEeChHH-HHHHHHcCCCCCCCccEEEEccchhhh-ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHH
Q 015093 159 VHVVVGTPGR-VFDMLRRQSLRPDYIRMFVLDEADEML-SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRK 233 (413)
Q Consensus 159 ~~Iii~T~~~-l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 233 (413)
|.. +.+.++. ...+++++|++|-+.+.. +......+.+++....+..-++.+|||...........
T Consensus 68 -------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~ 135 (196)
T PF00448_consen 68 -------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA 135 (196)
T ss_dssp -------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH
T ss_pred -------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH
Confidence 111 1122221 011236899999987643 22334566666666666667888999997655444433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00075 Score=58.58 Aligned_cols=40 Identities=18% Similarity=0.036 Sum_probs=25.8
Q ss_pred hhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 72 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 72 ~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
+.+..+.++++.||+|+|||..+.....+.... +.+++++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~---g~~v~f~ 132 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA---GHRVLFA 132 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHC---CCchhhh
Confidence 334456789999999999998765444433322 3355554
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=70.62 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=53.3
Q ss_pred CCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 61 EKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
+.+.+.|..|+..++.. ...+|.||+|+|||.+....+.+.+.. +.++++++||..-+.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999998876 568999999999998765544444332 34899999999988888888765
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00028 Score=55.37 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=26.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
++.+++.||+|+|||..+...+ ..+.... ..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~~~--~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGPPG--GGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCCCC--CCEEEECCEEccc
Confidence 4668999999999997764333 2322221 2467777765543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00058 Score=61.66 Aligned_cols=141 Identities=10% Similarity=-0.024 Sum_probs=73.6
Q ss_pred CCcHHHHhhhhhhhCCC----cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFCKGL----DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~----~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.++|||...+..+...+ -.++.||.|.|||..+...+...++....+.. -|. ....++.+.....-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~---~Cg-------~C~sC~~~~~g~HP 72 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG---ACG-------SCKGCQLLRAGSHP 72 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCC-------CCHHHHHHhcCCCC
Confidence 35889999998887653 27899999999998876655555443321111 111 11223333222221
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+..+..+.. +..|-|-....+.+.+...+. ....+++||||+|.+.. .....+.+++..-|.+..++
T Consensus 73 D~~~i~~~~~----------~~~i~id~iR~l~~~~~~~~~-~~~~kv~iI~~a~~m~~-~aaNaLLK~LEEPp~~~~fi 140 (328)
T PRK05707 73 DNFVLEPEEA----------DKTIKVDQVRELVSFVVQTAQ-LGGRKVVLIEPAEAMNR-NAANALLKSLEEPSGDTVLL 140 (328)
T ss_pred CEEEEeccCC----------CCCCCHHHHHHHHHHHhhccc-cCCCeEEEECChhhCCH-HHHHHHHHHHhCCCCCeEEE
Confidence 2222221100 001111111222222222222 23468999999998743 34566777777776666666
Q ss_pred EEeeeCC
Q 015093 218 VFSATMP 224 (413)
Q Consensus 218 ~lSAT~~ 224 (413)
++|..+.
T Consensus 141 L~t~~~~ 147 (328)
T PRK05707 141 LISHQPS 147 (328)
T ss_pred EEECChh
Confidence 5555443
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0021 Score=56.22 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=62.8
Q ss_pred CcHHHHhhhh----hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 63 PSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 63 ~~~~Q~~~~~----~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
+...|..++. .+..++++++.||+|+|||..+.....+.... +..++++. ...|..+.......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~~-~~~L~~~l~~a~~~-------- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFTR-TTDLVQKLQVARRE-------- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeeee-HHHHHHHHHHHHhC--------
Confidence 3445555553 23457789999999999997654333333222 33555554 34555443211000
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCCCceEE
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i 217 (413)
.+.+.+...+ ...+++|+||.+...... ....+..++.....+.+++
T Consensus 156 -------------------------~~~~~~l~~l-------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~I 203 (269)
T PRK08181 156 -------------------------LQLESAIAKL-------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIL 203 (269)
T ss_pred -------------------------CcHHHHHHHH-------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 1111222222 236899999999754322 2345666666554445566
Q ss_pred EEeeeCCh
Q 015093 218 VFSATMPP 225 (413)
Q Consensus 218 ~lSAT~~~ 225 (413)
..|-.++.
T Consensus 204 iTSN~~~~ 211 (269)
T PRK08181 204 ITANQPFG 211 (269)
T ss_pred EEcCCCHH
Confidence 55555543
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00083 Score=66.47 Aligned_cols=125 Identities=17% Similarity=0.161 Sum_probs=74.1
Q ss_pred CCCcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 61 EKPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
..|+.-|++|+...+.-++ .+|.|=+|+|||.+....+.-.+.. +.++|..+=|..-+....-.++.+ ++.+
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~---gkkVLLtsyThsAVDNILiKL~~~----~i~~ 740 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL---GKKVLLTSYTHSAVDNILIKLKGF----GIYI 740 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc---CCeEEEEehhhHHHHHHHHHHhcc----Ccce
Confidence 3688899999988877666 8999999999997765444333222 337888777766555555444443 3332
Q ss_pred EEEECCcchHH-----------------HHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 140 HACVGGTSVRE-----------------DQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 140 ~~~~~~~~~~~-----------------~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
..+..+..... ..+.+-+...|+.+|=-.+.+.+ +....+++.|+|||-.+.-
T Consensus 741 lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEcccccccc
Confidence 22222211111 11122234567766633332222 2334489999999998654
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0021 Score=58.62 Aligned_cols=171 Identities=18% Similarity=0.186 Sum_probs=83.6
Q ss_pred ccccCccCCCCCHHHHHHHHhC-C----CC---CCcHHHHhhhhh-----------hhCCCcEEEeCCCCCchhHHHHHH
Q 015093 37 EVYDSFDSMGLKENLLRGIYAY-G----FE---KPSAIQQRGIVP-----------FCKGLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~-~----~~---~~~~~Q~~~~~~-----------~~~~~~~lv~~~tGsGKT~~~~~~ 97 (413)
..+..+...++++.+.+.+-.. . .. ..+.+....+.. +.+++.+++.||||+|||.+....
T Consensus 78 ~l~~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakL 157 (374)
T PRK14722 78 ALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKL 157 (374)
T ss_pred HHHHHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHH
Confidence 3346667778888777666331 1 11 112333333322 122556899999999999887554
Q ss_pred HHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC
Q 015093 98 ILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS 177 (413)
Q Consensus 98 i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~ 177 (413)
+........ ..++.+++.- ....--.+.++.++...++.+.. +.++..+...+..
T Consensus 158 A~~~~~~~G-~~~V~lit~D-~~R~ga~EqL~~~a~~~gv~~~~---------------------~~~~~~l~~~l~~-- 212 (374)
T PRK14722 158 AARCVMRFG-ASKVALLTTD-SYRIGGHEQLRIFGKILGVPVHA---------------------VKDGGDLQLALAE-- 212 (374)
T ss_pred HHHHHHhcC-CCeEEEEecc-cccccHHHHHHHHHHHcCCceEe---------------------cCCcccHHHHHHH--
Confidence 433322211 1244444432 22112234455555444544332 2233333333322
Q ss_pred CCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCCCceEEEEeeeCChhHH-HHHHHh
Q 015093 178 LRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPGKIQVGVFSATMPPEAL-EITRKF 234 (413)
Q Consensus 178 ~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~-~~~~~~ 234 (413)
+.+.++|+||++-...... ....+..+.........++.+|||...... +....|
T Consensus 213 --l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 213 --LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred --hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 2235899999997543222 122222222222223457889999865443 333443
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.003 Score=57.47 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=67.7
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc-cH--HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP-TR--ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P-~~--~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
+.+.+.||+|+|||......+... . .. +.++.++.. +. +...| ++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~-~~-GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv--------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-H-GK-KKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEV--------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-H-Hc-CCcEEEEecCCcchHHHHH----HHHHhhhcCCcE---------------
Confidence 458899999999998765544433 2 22 234544443 22 23334 333333222221
Q ss_pred HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeeeCCh-hHHHHHH
Q 015093 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSATMPP-EALEITR 232 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~ 232 (413)
+.+.++..+...+..... ..++++|++|-+-+.... .....+.+++....+...++.+|||... .......
T Consensus 300 ------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 300 ------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 223466666655543211 113689999988765422 1233444555444444446669988654 4455555
Q ss_pred Hh
Q 015093 233 KF 234 (413)
Q Consensus 233 ~~ 234 (413)
.+
T Consensus 373 ~F 374 (436)
T PRK11889 373 NF 374 (436)
T ss_pred Hh
Confidence 44
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00076 Score=54.33 Aligned_cols=127 Identities=9% Similarity=0.066 Sum_probs=65.6
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
..|+.||.|+||+..+...+...+....... .|..-.-+. .+.....-.+..+..... .
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~c~~c~-------~~~~~~~~d~~~~~~~~~----------~ 79 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGECRSCR-------RIEEGNHPDFIIIKPDKK----------K 79 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SSSHHHH-------HHHTT-CTTEEEEETTTS----------S
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCHHHH-------HHHhccCcceEEEecccc----------c
Confidence 3799999999999887666665555444322 222222222 221111222333332211 0
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHH
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEAL 228 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~ 228 (413)
..|-+-....+...+...... ...+++|+||||.+.. .....+.+.+..-+.+..++++|..+..-..
T Consensus 80 ~~i~i~~ir~i~~~~~~~~~~-~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSPSE-GKYKVIIIDEADKLTE-EAQNALLKTLEEPPENTYFILITNNPSKILP 147 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS-TT-SSSEEEEEETGGGS-H-HHHHHHHHHHHSTTTTEEEEEEES-GGGS-H
T ss_pred chhhHHHHHHHHHHHHHHHhc-CCceEEEeehHhhhhH-HHHHHHHHHhcCCCCCEEEEEEECChHHChH
Confidence 012121112222222222222 4579999999998743 3578888899999888888877766654333
|
... |
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00095 Score=66.68 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=55.5
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|++-|.+++.+. .+.++|.|++|||||.+...-+...+.. +-...++|+++-|+..+.++.+++.+...
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4788999999763 5678999999999999987777666643 22344899999999999999888877643
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0009 Score=57.99 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=48.9
Q ss_pred HHHHHHhcCCCeEEEEeCccccCCCCCC--------CCEEEEcCCCCChhHHHhhhcccCCCCCc
Q 015093 320 IIMREFRSGSSRVLITTDLLARGIDVQQ--------VSLVINYDLPTQPENYLHRIGRSGRFGRK 376 (413)
Q Consensus 320 ~~~~~f~~~~~~vli~t~~~~~G~d~~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 376 (413)
.-.+.|.+|+..|+|.+.+.++|+.+.. -++-|...+|||....+|..||++|.|+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 3457899999999999999999999863 34456788999999999999999999873
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0031 Score=56.53 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=77.7
Q ss_pred CCCcHHHHhhhhhhhC----CC---cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 61 EKPSAIQQRGIVPFCK----GL---DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~----~~---~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
..+||+|..++..+.. ++ -.++.||.|.||+..+...+...++....... -|+. ++.+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~----------c~~~~~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRT----------RQLIAA 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchH----------HHHHhc
Confidence 4688999988887653 33 38899999999998876655555543321111 1111 111211
Q ss_pred ccCceEEEE--ECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC
Q 015093 134 YMGVKVHAC--VGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP 211 (413)
Q Consensus 134 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 211 (413)
...-.+..+ ..+.. .. .....|.|-....+.+.+...+.. ...+++|||+||.+. ......+.+++..-+
T Consensus 70 g~HPD~~~i~~~p~~~--~~----k~~~~I~idqIR~l~~~~~~~p~~-g~~kV~iI~~ae~m~-~~AaNaLLKtLEEPp 141 (319)
T PRK08769 70 GTHPDLQLVSFIPNRT--GD----KLRTEIVIEQVREISQKLALTPQY-GIAQVVIVDPADAIN-RAACNALLKTLEEPS 141 (319)
T ss_pred CCCCCEEEEecCCCcc--cc----cccccccHHHHHHHHHHHhhCccc-CCcEEEEeccHhhhC-HHHHHHHHHHhhCCC
Confidence 111122222 11110 00 001123333333333333333322 346899999999873 334677778888888
Q ss_pred CCceEEEEeeeCC
Q 015093 212 GKIQVGVFSATMP 224 (413)
Q Consensus 212 ~~~~~i~lSAT~~ 224 (413)
.+..++++|..+.
T Consensus 142 ~~~~fiL~~~~~~ 154 (319)
T PRK08769 142 PGRYLWLISAQPA 154 (319)
T ss_pred CCCeEEEEECChh
Confidence 7877777766554
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.007 Score=56.77 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=65.6
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++.+++.+|||+|||.+....+........ +.++.++.--.... ...+.++.++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~-~a~eqL~~~a~~~~vp~----------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRI-GAVEQLKTYAKIMGIPV----------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHH-HHHHHHHHHHHHhCCce-----------------
Confidence 456889999999999876544433320112 23454444322111 11233444433333322
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhC-CCCceEEEEeeeCChhH-HHHHHH
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHL-PGKIQVGVFSATMPPEA-LEITRK 233 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~-~~~~~~ 233 (413)
..+.+++.+...+... ..+++|+||.+-..... .....+..++... ......+.+|||..... ......
T Consensus 282 ----~~~~~~~~l~~~l~~~----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~ 353 (424)
T PRK05703 282 ----EVVYDPKELAKALEQL----RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKH 353 (424)
T ss_pred ----EccCCHHhHHHHHHHh----CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHH
Confidence 1223444455444432 24689999998754321 1223455555522 22344777999987543 333343
Q ss_pred h
Q 015093 234 F 234 (413)
Q Consensus 234 ~ 234 (413)
+
T Consensus 354 f 354 (424)
T PRK05703 354 F 354 (424)
T ss_pred h
Confidence 3
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0019 Score=60.61 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=16.7
Q ss_pred EEEeCCCCCchhHHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~ 100 (413)
.++.||.|+|||.++...+..
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 699999999999887554433
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0018 Score=65.52 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=56.6
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
..|++-|.+++.+- .+.++|.|.+|||||.+...-+...+.. +-...++|+++-|+..+.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35889999999763 5679999999999999887766665543 22345899999999999999999988754
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0005 Score=55.50 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=53.2
Q ss_pred EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCc
Q 015093 81 IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVH 160 (413)
Q Consensus 81 lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (413)
++.|+-|-|||.+.-+++.. +.... ..+++|..|+.+-++...+.+.+-....+.+..... ..............
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~~~-~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQKG-KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHH-HHHhc-CceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccccccccce
Confidence 57899999999665333322 22222 248999999998877777666554433333220000 00000111122456
Q ss_pred EEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 161 VVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 161 Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
|-+..|+.+... ....+++|||||=.+ ....+..++...+ .+.+|.|...
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~~----~vv~stTi~G 125 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRFP----RVVFSTTIHG 125 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBSS
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhCC----EEEEEeeccc
Confidence 777777766422 122589999999876 3444555544443 5678888753
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.014 Score=52.80 Aligned_cols=129 Identities=22% Similarity=0.292 Sum_probs=68.5
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc---HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT---RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
-+++.|++|+|||.+....+ ..+.. . +.+++++... ..-..|+...... .++.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~-~-g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~--------- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK-N-GFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGA--------- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH-c-CCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCC---------
Confidence 37889999999998654333 23322 2 3356555443 2334444333333 344332111111
Q ss_pred hcCCcEEEeChHH-HHHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHH
Q 015093 156 SAGVHVVVGTPGR-VFDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRK 233 (413)
Q Consensus 156 ~~~~~Iii~T~~~-l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 233 (413)
.|.. +.+.+... .....++|++|.++++.. ......+.++.+...+...++.++||...+.....+.
T Consensus 206 ---------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 206 ---------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred ---------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 1111 11111110 012357999999998752 2344556666666666677888999887665555554
Q ss_pred h
Q 015093 234 F 234 (413)
Q Consensus 234 ~ 234 (413)
+
T Consensus 275 f 275 (336)
T PRK14974 275 F 275 (336)
T ss_pred H
Confidence 4
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0029 Score=60.96 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=53.8
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|+|+|...+..+..++-.++..+-..|||......++...... .+..++++.|+..-+....+.++.+..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999998876667778999999999988764443333222 245899999999888888877776544
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0034 Score=61.83 Aligned_cols=38 Identities=8% Similarity=0.275 Sum_probs=26.2
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++++||||+|.+... -...+.+++...+....+|+.|
T Consensus 119 r~KVIIIDEah~LT~~-A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH-AFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CceEEEEeChhhCCHH-HHHHHHHHHHhcCCCeEEEEEE
Confidence 4689999999987543 3455666777776666656444
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0041 Score=62.99 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=28.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++++||||+|.+.. .-.+.+.+++...+....+|+++
T Consensus 119 ~~~KV~IIDEad~lt~-~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP-QGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCH-HHHHHHHHHHhCCCCCeEEEEEe
Confidence 3478999999998853 34566777788777777666655
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0023 Score=64.74 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=55.8
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|++-|.+++.+. .+.++|.|++|||||.+...-+...+.. +-...++|+++-|+..+.++.+++.++..
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999999753 4679999999999999887666655542 22345899999999999999999888654
|
|
| >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0019 Score=52.28 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=61.0
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-.++.+|++||||.-.+..+...-.. +.++++..|...-. + +......+.|.. .
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~iD~R---------~----~~~~V~Sr~G~~----------~ 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAIDTR---------Y----GVGKVSSRIGLS----------S 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHc---CCeEEEEecccccc---------c----ccceeeeccCCc----------c
Confidence 36899999999998765444433222 44889988865421 1 111112222221 2
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL 210 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 210 (413)
..+.|-+...+...+........ .+.|.+|||+.+ +...-..+.++...+
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 35667677777777766543333 689999999954 333344455555543
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0031 Score=63.48 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=54.7
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
|++-|.+++.+ ..+.++|.|++|||||.+.+.-+...+.. .....++++++.|+..+.++.+++.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889999875 35679999999999999987777766643 22345799999999999999888877543
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0023 Score=55.05 Aligned_cols=43 Identities=16% Similarity=0.436 Sum_probs=27.6
Q ss_pred ccEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 183 IRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
.+++|+|++|.+... .+...+..+++.+..+-+.+++|++.++
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 578999999976433 3445577777666543345566666543
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0065 Score=53.76 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH
Q 015093 50 NLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 50 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
++.++|...+.++..+--.+.+.-+..|..+++.|++|+|||...+..+...+.. .+.+++++.-- .-..+..+.+.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcc-cCHHHHHHHHH
Confidence 4555566444444333333333445567779999999999998766555444322 13477777642 23444544443
Q ss_pred H
Q 015093 130 A 130 (413)
Q Consensus 130 ~ 130 (413)
.
T Consensus 80 ~ 80 (271)
T cd01122 80 G 80 (271)
T ss_pred H
Confidence 3
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.049 Score=60.91 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=80.3
Q ss_pred CCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
.|.+-|.+++..++.+ +-.+|.++.|+|||.+. -.+.+.+.. .+.+++.+.|+-.-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE--QGYEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 6888999999998876 44899999999999663 444444433 24589999999876655554322110
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC-CCCceEEE
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL-PGKIQVGV 218 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~ 218 (413)
.....+...... .....|...|. .....+..-++|||||+-.+ -...+..++... +.+.++|+
T Consensus 499 ------~Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl----~~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ------STFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKL----SNNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred ------hhHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCC----CHHHHHHHHHHHhhcCCEEEE
Confidence 011111111111 11122333333 12223344689999999976 344455666544 45778887
Q ss_pred Eeee
Q 015093 219 FSAT 222 (413)
Q Consensus 219 lSAT 222 (413)
+.=+
T Consensus 563 vGD~ 566 (1960)
T TIGR02760 563 LNDS 566 (1960)
T ss_pred EcCh
Confidence 7655
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0045 Score=59.02 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=27.7
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
+.+++.||+|+|||..+ .++...+.....+.+++++.. ..+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi~~-~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYVTS-EKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 45899999999999765 344444444333446666644 4444443
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0029 Score=62.92 Aligned_cols=72 Identities=22% Similarity=0.176 Sum_probs=54.7
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.-..|++-|.+++..- ..+++|.|..|||||.+...-+...+... ....++++++.++..+..+.+++....
T Consensus 193 e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 193 ESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred cCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 3357999999999643 35689999999999998766555444332 234589999999999999988887644
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0031 Score=56.73 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=25.2
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
.+.|+.||+|+|||..+-+.+ +..+..+.-+..+.+=+.+..+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA------~~~~~~f~~~sAv~~gvkdlr~ 91 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIA------GTTNAAFEALSAVTSGVKDLRE 91 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHH------HhhCCceEEeccccccHHHHHH
Confidence 358999999999997763222 2223345555555444444333
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0065 Score=65.97 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=45.0
Q ss_pred CCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhccc--ccCceeEEEEcccHHHHHH
Q 015093 61 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDY--ESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~--~~~~~~~lvl~P~~~l~~q 123 (413)
..|++-|.+++..++.+ +-++|.|..|+|||... -.+...+.. ...+.+++.+.||-.-+..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 36899999999999885 45899999999999764 344443321 2234578889998765543
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0054 Score=55.10 Aligned_cols=139 Identities=8% Similarity=-0.020 Sum_probs=71.5
Q ss_pred CcHHHHhhhhhhh----CCC---cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 63 PSAIQQRGIVPFC----KGL---DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 63 ~~~~Q~~~~~~~~----~~~---~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
++|||...+..+. +++ -.++.||.|.||+..+...+...++........ |. ....++.+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~---Cg-------~C~sC~~~~~g~ 72 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQP---CG-------QCHSCHLFQAGN 72 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCC---CC-------CCHHHHHHhcCC
Confidence 3566666665544 343 377999999999988766555555433211111 11 112233333322
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
.-.+..+.+.. +..|-|-....+.+.+...+. ....+++|+|+||.+... ....+.+++..-|....
T Consensus 73 HPD~~~i~p~~-----------~~~I~id~iR~l~~~~~~~~~-~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~ 139 (325)
T PRK06871 73 HPDFHILEPID-----------NKDIGVDQVREINEKVSQHAQ-QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTY 139 (325)
T ss_pred CCCEEEEcccc-----------CCCCCHHHHHHHHHHHhhccc-cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeE
Confidence 22222222110 011222222222222322222 234689999999988433 46777778888777776
Q ss_pred EEEEeeeCC
Q 015093 216 VGVFSATMP 224 (413)
Q Consensus 216 ~i~lSAT~~ 224 (413)
++++|..+.
T Consensus 140 fiL~t~~~~ 148 (325)
T PRK06871 140 FLLQADLSA 148 (325)
T ss_pred EEEEECChH
Confidence 666555543
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.004 Score=66.59 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=78.3
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC 142 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
+++-|.+++.. .+++++|.|..|||||.+..--++..+..+..-.+++++|=|++.+.++.+++.+.....-.
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~----- 74 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQ----- 74 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh-----
Confidence 57889999974 68889999999999999887766666654433347999999999999988888765432100
Q ss_pred ECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-C--CCCCccEEEEccchh
Q 015093 143 VGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-L--RPDYIRMFVLDEADE 193 (413)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~--~~~~~~~iIiDE~h~ 193 (413)
.........+.+..-...-|+|.++|...+.+.. . .++ ..+=|.||...
T Consensus 75 -~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 75 -QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred -cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 0001111122223334677999999975553322 1 222 23445887764
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0056 Score=57.59 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=25.0
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.+++.||+|+|||..+ .++...+.....+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEEH
Confidence 34899999999999765 344444444333446777653
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.013 Score=48.57 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=33.3
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
++|.||+|+|||..++..+.+.+.. +.+++|++.. +-..+..+.+.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999998876655555433 3477888653 4466666666665
|
A related protein is found in archaea. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=47.58 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=24.0
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
++|.|++|+|||..+...+... .. .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT--KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh--cCCEEEEEECCcch
Confidence 6899999999998764433332 22 23467777665443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0048 Score=55.93 Aligned_cols=140 Identities=9% Similarity=-0.025 Sum_probs=75.5
Q ss_pred CcHHHHhhhhhhh----CCC---cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 63 PSAIQQRGIVPFC----KGL---DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 63 ~~~~Q~~~~~~~~----~~~---~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
+||||...+..+. +++ -.++.||.|.||+..+...+...++....+....=.| ..++.+....
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C----------~sC~~~~~g~ 72 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHC----------RGCQLMQAGT 72 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCC----------HHHHHHHcCC
Confidence 5677777776654 333 3789999999999887665555554332221111111 2233333222
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
.-.+..+.+... +..|-|-....+.+.+...+. ....+++|||+||.+.. .....+.+++..-|.+.-
T Consensus 73 HPD~~~i~p~~~----------~~~I~idqiR~l~~~~~~~~~-~g~~kV~iI~~ae~m~~-~AaNaLLKtLEEPp~~t~ 140 (334)
T PRK07993 73 HPDYYTLTPEKG----------KSSLGVDAVREVTEKLYEHAR-LGGAKVVWLPDAALLTD-AAANALLKTLEEPPENTW 140 (334)
T ss_pred CCCEEEEecccc----------cccCCHHHHHHHHHHHhhccc-cCCceEEEEcchHhhCH-HHHHHHHHHhcCCCCCeE
Confidence 222333322110 012223333333333333332 23479999999998743 346677777777777776
Q ss_pred EEEEeeeCC
Q 015093 216 VGVFSATMP 224 (413)
Q Consensus 216 ~i~lSAT~~ 224 (413)
++++|.-+.
T Consensus 141 fiL~t~~~~ 149 (334)
T PRK07993 141 FFLACREPA 149 (334)
T ss_pred EEEEECChh
Confidence 676666554
|
|
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0034 Score=60.27 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=80.6
Q ss_pred HHHHhhhhhhh-----CC----CcEEEeCCCCCchhHHHHHHHHHhc-ccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 65 AIQQRGIVPFC-----KG----LDVIQQAQSGTGKTATFCSGILQQL-DYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 65 ~~Q~~~~~~~~-----~~----~~~lv~~~tGsGKT~~~~~~i~~~l-~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
|+|.-.+..+. .+ +.+++..|-|-|||......++..+ .....+..++++.+++.-+...++.++++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 46666665554 12 3489999999999976654444333 33344568999999999999999988887654
Q ss_pred cCceEEEEECCcchHHHHHH-HhcCCcEEEeChHHHHHHHHc--CCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC
Q 015093 135 MGVKVHACVGGTSVREDQRI-LSAGVHVVVGTPGRVFDMLRR--QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP 211 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~-~~~~~~Iii~T~~~l~~~~~~--~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 211 (413)
......... .+. ......|.....+.+...+.. ....-.+.+++|+||+|...+......+..-....+
T Consensus 81 ~~~l~~~~~--------~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~ 152 (477)
T PF03354_consen 81 SPELRKRKK--------PKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGARP 152 (477)
T ss_pred Chhhccchh--------hhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccCC
Confidence 311110000 000 011123333322332222222 122222468999999998865434444444444433
Q ss_pred CCceEEEEe
Q 015093 212 GKIQVGVFS 220 (413)
Q Consensus 212 ~~~~~i~lS 220 (413)
+++++.+|
T Consensus 153 -~pl~~~IS 160 (477)
T PF03354_consen 153 -NPLIIIIS 160 (477)
T ss_pred -CceEEEEe
Confidence 44444443
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0065 Score=65.15 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=44.5
Q ss_pred CCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcc--cccCceeEEEEcccHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLD--YESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~--~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.|++-|.+++..++.+ +-++|.|..|+|||.+. -.++..+. ....+.+++.+.||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 7999999999999865 55999999999999764 22222221 122345788899987755544
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0056 Score=59.53 Aligned_cols=38 Identities=8% Similarity=0.266 Sum_probs=25.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++||||+|.+... ....+.+.+...+....+|+.+
T Consensus 118 k~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 118 RFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 4689999999987433 3456667777766666566443
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.013 Score=53.04 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=26.3
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
..+++|+||+|.+... ....+.+.+...++...++ ++++.
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~i-l~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFA-LACNT 138 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEE-EEeCC
Confidence 3689999999987533 3556666676666555555 44443
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0049 Score=52.39 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=59.0
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.+++.||+|+|||-. +.++...+.....+.+++++... .........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------------
Confidence 389999999999974 45555555544445577777643 333332222211
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCC-CceEEEEeeeCCh
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPG-KIQVGVFSATMPP 225 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~lSAT~~~ 225 (413)
...+.+.+.+. ..+++++|++|.+.... +...+..+++.+.. +.++|+.|..++.
T Consensus 86 -----~~~~~~~~~~~-------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 -----GEIEEFKDRLR-------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp -----TSHHHHHHHHC-------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred -----ccchhhhhhhh-------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 11122222222 36899999999876432 34556666655533 4566655545544
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0064 Score=58.46 Aligned_cols=38 Identities=8% Similarity=0.281 Sum_probs=27.2
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++++|+||+|.+... ....+.+.+...|....+|+.|
T Consensus 119 ~~kV~iIDE~~~ls~~-a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH-SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CcEEEEEEChHhcCHH-HHHHHHHHHhccCCCeEEEEEE
Confidence 4689999999987543 3456667777777777666655
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0077 Score=57.17 Aligned_cols=39 Identities=5% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... -...+.+.+...++...+++.+
T Consensus 115 ~~~KVvIIDEah~Ls~~-A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS-AFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 34789999999987443 2445666666666655555443
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0067 Score=54.35 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=75.2
Q ss_pred CCcHHHHhhhhhhhC----CC---cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 62 KPSAIQQRGIVPFCK----GL---DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~~---~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
.++|||...+..+.+ ++ -.++.||.|.||+..+...+...+...... .. |.. ...++.+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~~---Cg~-------C~sC~~~~~g 71 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-EA---CGF-------CHSCELMQSG 71 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-CC---CCC-------CHHHHHHHcC
Confidence 456777777766543 33 389999999999987765555555443211 11 111 1223333332
Q ss_pred cCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 135 MGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
..-.+..+..+.. +..|-|-....+...+.... .....+++|||+||.+. ......+.+++..-|.+.
T Consensus 72 ~HPD~~~i~p~~~----------~~~I~vdqiR~l~~~~~~~~-~~~~~kV~iI~~ae~m~-~~AaNaLLKtLEEPp~~t 139 (319)
T PRK06090 72 NHPDLHVIKPEKE----------GKSITVEQIRQCNRLAQESS-QLNGYRLFVIEPADAMN-ESASNALLKTLEEPAPNC 139 (319)
T ss_pred CCCCEEEEecCcC----------CCcCCHHHHHHHHHHHhhCc-ccCCceEEEecchhhhC-HHHHHHHHHHhcCCCCCe
Confidence 2222333322110 01122222222222222222 23447899999999874 334677778888877777
Q ss_pred eEEEEeeeCCh
Q 015093 215 QVGVFSATMPP 225 (413)
Q Consensus 215 ~~i~lSAT~~~ 225 (413)
.++++|..+..
T Consensus 140 ~fiL~t~~~~~ 150 (319)
T PRK06090 140 LFLLVTHNQKR 150 (319)
T ss_pred EEEEEECChhh
Confidence 77766666543
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0045 Score=53.31 Aligned_cols=40 Identities=8% Similarity=0.273 Sum_probs=23.9
Q ss_pred ccEEEEccchhhhcc-CcHHHHHHHHhhCCC-C-ceEEEEeeeC
Q 015093 183 IRMFVLDEADEMLSR-GFKDQIYDIFQHLPG-K-IQVGVFSATM 223 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~-~-~~~i~lSAT~ 223 (413)
++++++||+|.+... .+...+..+++.... + .+++ +|++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li-~ts~~ 140 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLL-ITGDR 140 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEE-EeCCC
Confidence 468999999987532 344555566655432 2 3455 45553
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.011 Score=58.19 Aligned_cols=158 Identities=17% Similarity=0.240 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCc--EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
+.++.....+......++..-|.+.+..+...+. +++.|.-|-|||.+.=+++........ ..+++|..|+.+-++.
T Consensus 198 ~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 198 PLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQT 276 (758)
T ss_pred CCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHH
Confidence 3333334445555555666666677777766543 888999999999776554433222222 4589999999998888
Q ss_pred HHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHH
Q 015093 124 IEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQI 203 (413)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~ 203 (413)
..+.+.+-....|.+..+...... ...........|-+.+|.... .. -+++|+|||=-+ ....+
T Consensus 277 Lf~fa~~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~---------~~-~DllvVDEAAaI----plplL 340 (758)
T COG1444 277 LFEFAGKGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAI----PLPLL 340 (758)
T ss_pred HHHHHHHhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc---------cc-CCEEEEehhhcC----ChHHH
Confidence 888777655555443222111100 000000112234455555432 11 479999999876 45555
Q ss_pred HHHHhhCCCCceEEEEeeeCC
Q 015093 204 YDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 204 ~~~~~~~~~~~~~i~lSAT~~ 224 (413)
.+++..++ .+++|.|..
T Consensus 341 ~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 341 HKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred HHHHhhcC----ceEEEeeec
Confidence 56666554 578999986
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0076 Score=57.12 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=30.3
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
+.+++.|++|+|||... .++...+.....+.+++++.+ ..+..+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHH
Confidence 34899999999999654 455555444444557777665 4555444433
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0092 Score=51.17 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.0
Q ss_pred CCCcEEEeCCCCCchhHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~ 96 (413)
.+..+++.||+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356799999999999977643
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0064 Score=61.15 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=26.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
.++++||||+|.+. ..-...+.+++...+...++|+. .|-
T Consensus 119 k~KViIIDEAh~LT-~eAqNALLKtLEEPP~~vrFILa-TTe 158 (944)
T PRK14949 119 RFKVYLIDEVHMLS-RSSFNALLKTLEEPPEHVKFLLA-TTD 158 (944)
T ss_pred CcEEEEEechHhcC-HHHHHHHHHHHhccCCCeEEEEE-CCC
Confidence 46899999999873 33445666677766666666654 443
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.011 Score=53.72 Aligned_cols=40 Identities=13% Similarity=0.299 Sum_probs=28.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
....+||+|||+.+.. +....+.+.+...+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEcC
Confidence 4578999999998754 346667777777777776665554
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0074 Score=52.99 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.5
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998763
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0052 Score=52.71 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=27.4
Q ss_pred CccEEEEccchhhhc-cCcHHHHHHHHhhCCC-CceEEEEeeeCCh
Q 015093 182 YIRMFVLDEADEMLS-RGFKDQIYDIFQHLPG-KIQVGVFSATMPP 225 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~-~~~~i~lSAT~~~ 225 (413)
+.+++++||+|.+.. ..+...+..+++.... +.+++++|++..+
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 468999999998753 2334455555555543 3456667777544
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0056 Score=55.41 Aligned_cols=150 Identities=11% Similarity=0.011 Sum_probs=75.5
Q ss_pred CcHHHHhhhhhhhC--C---CcEEEeCCCCCchhHHHHHHHHHhcccccCc-eeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 63 PSAIQQRGIVPFCK--G---LDVIQQAQSGTGKTATFCSGILQQLDYESLQ-CQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~--~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~-~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
+||||...+..+.. + .-.++.||.|.||+..+...+...++....+ ... |.. ...++.+.....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~---Cg~-------C~~C~~~~~~~H 71 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEP---CGT-------CAACNWFAQGNH 71 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCC---CCC-------CHHHHHHHcCCC
Confidence 36777777777654 2 2378999999999988766555555433211 010 111 111233322222
Q ss_pred ceEEEEECCcch--------H-------HH-HHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH
Q 015093 137 VKVHACVGGTSV--------R-------ED-QRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200 (413)
Q Consensus 137 ~~~~~~~~~~~~--------~-------~~-~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 200 (413)
-.+..+...... . .. .+.......|-|-....+.+.+..... ....+++|||+||.+.. .-.
T Consensus 72 PD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~-~~~~kV~iI~~ae~m~~-~Aa 149 (342)
T PRK06964 72 PDYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTH-RGGARVVVLYPAEALNV-AAA 149 (342)
T ss_pred CCEEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCc-cCCceEEEEechhhcCH-HHH
Confidence 122222211000 0 00 000000123444444444444433333 23468999999998743 345
Q ss_pred HHHHHHHhhCCCCceEEEEeeeCC
Q 015093 201 DQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
..+.+.+..-|++..++++|..+.
T Consensus 150 NaLLKtLEEPp~~t~fiL~t~~~~ 173 (342)
T PRK06964 150 NALLKTLEEPPPGTVFLLVSARID 173 (342)
T ss_pred HHHHHHhcCCCcCcEEEEEECChh
Confidence 667777777777776776666654
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0081 Score=58.34 Aligned_cols=42 Identities=7% Similarity=0.242 Sum_probs=27.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
..++++||||+|.+... -.+.+.+.+..-+....+|+.|.-+
T Consensus 123 gr~KViIIDEah~Ls~~-AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNH-AFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred CCceEEEEEChHhcCHH-HHHHHHHhhccCCCCceEEEEeCCh
Confidence 34789999999987433 3445556666666667666655444
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0089 Score=51.43 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=24.3
Q ss_pred ccEEEEccchhhhccC-cHHHHHHHHhhCCC-CceEEEEeeeCCh
Q 015093 183 IRMFVLDEADEMLSRG-FKDQIYDIFQHLPG-KIQVGVFSATMPP 225 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~lSAT~~~ 225 (413)
.+++|+||+|.+.... ....+..++..... +.++++.|-.++.
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPD 138 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChh
Confidence 5799999999875432 33345555554432 3345544444443
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.016 Score=53.05 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=24.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++||+||+|.+... ....+...+...+...++|+.+
T Consensus 125 ~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 125 DYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 3579999999987432 3445666666666666666543
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0025 Score=58.82 Aligned_cols=56 Identities=29% Similarity=0.297 Sum_probs=40.0
Q ss_pred CcHHHHhhhhhh------hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 63 PSAIQQRGIVPF------CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 63 ~~~~Q~~~~~~~------~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
|.+-|+++++.+ .++..++|.|+.|+|||..+ -.+.+.+.. .+..+++++||-.-|
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--ccceEEEecchHHHH
Confidence 667788888887 66788999999999999764 334444333 234788888875433
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=52.31 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=26.3
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++||+||+|.+........+..++...+.+.++++.|
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 57999999998733334556666677777677666544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0072 Score=59.63 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=75.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
.+-+++++|.|+|||....-++. .. ..+..+.|+.-.. --++-.+.+..+....+--+-.. ++.. . ....
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~-~~---~~~~~v~Wlslde-~dndp~rF~~yLi~al~~~~p~~-~~~a---~-~l~q 106 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRE-LA---ADGAAVAWLSLDE-SDNDPARFLSYLIAALQQATPTL-GDEA---Q-TLLQ 106 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHH-hc---CcccceeEeecCC-ccCCHHHHHHHHHHHHHHhCccc-cHHH---H-HHHH
Confidence 45589999999999976544332 22 2244677776432 24444444444333221111111 1111 1 1111
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
. +. ......+.+.+...-......=++|+|+.|.+.+......+..+++..|.+...++.|-+-+
T Consensus 107 ~--~~-~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 107 K--HQ-YVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred h--cc-cccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 1 11 12222333333221111222358999999999998888999999999999999998887754
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.016 Score=50.87 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=24.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.++++.|++|+|||..+. ++...+.... +..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhhc-CceEEEEEH
Confidence 5679999999999997653 4444443321 335666653
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0023 Score=62.06 Aligned_cols=157 Identities=21% Similarity=0.247 Sum_probs=91.4
Q ss_pred CCcHHHHhhhhhhh--------CCC--cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFC--------KGL--DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~--------~~~--~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.+...|.+++-... +|. .+||-...|-||-.+..-.|++...+++ +++||+.-+..|--+..+.++..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR--KrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR--KRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc--ceeEEEEeccccccchhhchhhc
Confidence 46667877774332 233 2777777777776554334555554443 48999999999987777777766
Q ss_pred hcccCceEEEEECCcc--hHHHHHHHhcCCcEEEeChHHHHHHHHcCC-------------CCCCCccEEEEccchhhhc
Q 015093 132 GDYMGVKVHACVGGTS--VREDQRILSAGVHVVVGTPGRVFDMLRRQS-------------LRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 132 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-------------~~~~~~~~iIiDE~h~~~~ 196 (413)
+. .++.|..+..-.- +.... .-..+-.|+++||..|.-.-.... ....+-++||+||||...+
T Consensus 342 gA-~~I~V~alnK~KYakIss~e-n~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKN 419 (1300)
T KOG1513|consen 342 GA-TGIAVHALNKFKYAKISSKE-NTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKN 419 (1300)
T ss_pred CC-CCccceehhhcccccccccc-cCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcc
Confidence 43 2344433321000 00000 001124699999998854322110 0011136999999998654
Q ss_pred c---------CcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 197 R---------GFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 197 ~---------~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
. .-+..+..+-+.+| +.+++.-|||-
T Consensus 420 L~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 420 LVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred cccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 1 13356666667776 57899999996
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.032 Score=42.91 Aligned_cols=38 Identities=11% Similarity=0.229 Sum_probs=26.3
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
-.+|++||+|.+ +++...+..+.... .+.+++ +|++..
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~-~~~~ii-~tgS~~ 99 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNG-PNIKII-LTGSSS 99 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhc-cCceEE-EEccch
Confidence 468999999998 45677777777755 345555 555543
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.015 Score=54.61 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
.+++|.||+|+|||...- .++..+........++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 569999999999997753 333333332223345555
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.01 Score=51.59 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
.+.++++.||+|+|||..+.....+ +... + .-+..+++.+++.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~-l~~~--g-~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE-LLKA--G-ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH-HHHc--C-CeEEEEEHHHHHHHHHHH
Confidence 5678999999999999876444433 3322 3 344445566776665443
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.014 Score=50.43 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=25.8
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.++++.||+|+|||..+. ++...+... +..++++ +...+..+.
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~~--g~~v~~i-~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLAK--GRSVIVV-TVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCeEEE-EHHHHHHHH
Confidence 569999999999997653 344444332 2244443 444555543
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0096 Score=57.97 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=27.0
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++||||+|.+... -...+.+.+...+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34689999999987533 3455666777766666666555
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.028 Score=48.39 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
..+++.|++|+|||..+. ++...+... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~--g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR--GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc--CCeEEEE
Confidence 468999999999997654 333333332 3355555
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0092 Score=55.99 Aligned_cols=136 Identities=17% Similarity=0.243 Sum_probs=74.5
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH-HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE-LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.++.|+.|||||......++..+.....+.+++++-++.. +..-....+.......++........... .......+
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~g 81 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNTG 81 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCCC
Confidence 6789999999998887766665555323458899988886 66666777766555444432221111100 00000113
Q ss_pred CcEEEeCh-HHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC--CCceEEEEeeeCChh
Q 015093 159 VHVVVGTP-GRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP--GKIQVGVFSATMPPE 226 (413)
Q Consensus 159 ~~Iii~T~-~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~lSAT~~~~ 226 (413)
..|++..- +.-.. +. ....+..+.+|||..+... .+..+..+++ .....+.+|.||...
T Consensus 82 ~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 82 KKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred eEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 34555443 21111 11 1122689999999987433 3333333333 222247788888653
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0048 Score=53.40 Aligned_cols=58 Identities=12% Similarity=0.234 Sum_probs=39.1
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
.....|+++++++.+.+.+.. ...-++|.+|||||||.+ +.++.+.+.+.... .++-+
T Consensus 103 ~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~~~-HIlTI 160 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHKAK-HILTI 160 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccCCc-ceEEe
Confidence 335677777777777764432 123389999999999976 57777877666543 44433
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.01 Score=60.32 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=55.6
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-CceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-LQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
..|++-|.+++.+. .+.++|.|..|||||.+.+.-+...+.... ...++|+++-|+..+..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35889999999753 567999999999999988777766654322 234799999999989888888877653
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.012 Score=57.69 Aligned_cols=37 Identities=8% Similarity=0.260 Sum_probs=26.4
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEE
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
.++++||||+|.+... -...+.+++..-+....+|+.
T Consensus 119 ~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 119 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe
Confidence 4789999999987433 456666777777766666654
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.01 Score=58.03 Aligned_cols=39 Identities=10% Similarity=0.294 Sum_probs=24.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++++||||+|.+.... ...+.+.+...+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 347899999999874332 344555555555555555544
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.014 Score=53.58 Aligned_cols=132 Identities=13% Similarity=0.108 Sum_probs=66.5
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCc-------eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQ-------CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ 152 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~-------~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
.++.||.|.||+..+...+...++....+ ...+-+|+.-. .++.+.....-.+..+.........
T Consensus 44 ~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~-------~c~~i~~~~HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 44 WLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP-------VARRIAAGAHGGLLTLERSWNEKGK- 115 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh-------HHHHHHccCCCCeEEEecccccccc-
Confidence 88999999999988766665555443211 11222233211 2222222221122222221100000
Q ss_pred HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 153 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
.....|.|-....+.+.+.... ......++||||+|.+- ......+.+.++..+....++++|..+.
T Consensus 116 ---~~~~~I~VdqiR~l~~~~~~~~-~~~~~kVviIDead~m~-~~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 116 ---RLRTVITVDEVRELISFFGLTA-AEGGWRVVIVDTADEMN-ANAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred ---cccccccHHHHHHHHHHhCcCc-ccCCCEEEEEechHhcC-HHHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 0012344433333333333222 23447899999999873 3445667777777766666666665553
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.02 Score=56.20 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++++||||+|.+... -...+.+.+...+....+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 34789999999987432 3456667777766666666544
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.089 Score=47.43 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=46.0
Q ss_pred cccccCccCCCCCHHHHHHHHhC--------CCC------CCcHHHHhhh------hhhhCC-----CcEEEeCCCCCch
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAY--------GFE------KPSAIQQRGI------VPFCKG-----LDVIQQAQSGTGK 90 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~--------~~~------~~~~~Q~~~~------~~~~~~-----~~~lv~~~tGsGK 90 (413)
+...+.|+.++....+.+.|+.- .+. .-...-.+|+ +.+.+| +.++.++|+|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 34467888888888888777642 111 1111111221 111222 5699999999999
Q ss_pred hHHHHHHHHHhcccccCceeEEEEcccHHHHHHHH
Q 015093 91 TATFCSGILQQLDYESLQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 91 T~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~ 125 (413)
|+.+=..+.+. + ..++=+.+..|...|.
T Consensus 259 TlLAKAvATEc------~-tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 259 TLLAKAVATEC------G-TTFFNVSSSTLTSKWR 286 (491)
T ss_pred HHHHHHHHHhh------c-CeEEEechhhhhhhhc
Confidence 97663222221 2 5566666666655443
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.036 Score=48.02 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=75.0
Q ss_pred hhhhCCC-----cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCc
Q 015093 72 VPFCKGL-----DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGT 146 (413)
Q Consensus 72 ~~~~~~~-----~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 146 (413)
+++.+|+ .+++.+|+|+||+..+-..+.+. + -.++-+.+..|+..|.-+-.++..
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA------n-STFFSvSSSDLvSKWmGESEkLVk------------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA------N-STFFSVSSSDLVSKWMGESEKLVK------------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc------C-CceEEeehHHHHHHHhccHHHHHH-------------
Confidence 3455553 38999999999996543222221 2 567777788888877655444321
Q ss_pred chHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc---CcHHHHHHH----HhhCC----CCce
Q 015093 147 SVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR---GFKDQIYDI----FQHLP----GKIQ 215 (413)
Q Consensus 147 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~---~~~~~~~~~----~~~~~----~~~~ 215 (413)
.|+.+.+.. ..++|.+||++.+... +....-.++ +-++. ++-.
T Consensus 216 ---------------------nLFemARe~-----kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 216 ---------------------NLFEMAREN-----KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred ---------------------HHHHHHHhc-----CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 122222222 2578999999976532 122222222 22222 2456
Q ss_pred EEEEeeeCChhHHH-HHHHhcCCCEEEEecCCcc
Q 015093 216 VGVFSATMPPEALE-ITRKFMNKPVRILVKRDEL 248 (413)
Q Consensus 216 ~i~lSAT~~~~~~~-~~~~~~~~~~~~~~~~~~~ 248 (413)
++.+.||-.++..+ .+++-+...+.+......+
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~A 303 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA 303 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceeccCCcHHH
Confidence 88899998776544 4566666666555544433
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.012 Score=54.31 Aligned_cols=38 Identities=11% Similarity=0.300 Sum_probs=24.3
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+.... ...+.+.+...+....+++.|
T Consensus 119 ~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 46899999999874322 334555666655566566543
|
|
| >COG4626 Phage terminase-like protein, large subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.019 Score=54.22 Aligned_cols=149 Identities=11% Similarity=0.009 Sum_probs=83.8
Q ss_pred CCcHHHHhhhhhhhC------C----CcEEEeCCCCCchhHHHH-HHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCK------G----LDVIQQAQSGTGKTATFC-SGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~------~----~~~lv~~~tGsGKT~~~~-~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
.+-|||.-++.++.- + +.++|..|-+-|||..+. +.....+.....+..+.|+.|+.+-+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 788999999988862 2 248999999999996654 22223333445566899999999988888887776
Q ss_pred hhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc--CCCCCCCccEEEEccchhhhccCcHHHHHHHHh
Q 015093 131 LGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR--QSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQ 208 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~--~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 208 (413)
...... ........-.....|...--......+.. ...+-.+..+.|+||.|.+.... ..+..+..
T Consensus 141 mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~ 208 (546)
T COG4626 141 MVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKG 208 (546)
T ss_pred HHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHh
Confidence 544332 00000000001111222211222222222 22333346799999999875542 33444433
Q ss_pred hCC--CCceEEEEeee
Q 015093 209 HLP--GKIQVGVFSAT 222 (413)
Q Consensus 209 ~~~--~~~~~i~lSAT 222 (413)
-+. ++.++++.|..
T Consensus 209 g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 209 GLGARPEGLVVYITTS 224 (546)
T ss_pred hhccCcCceEEEEecC
Confidence 332 24566766653
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.059 Score=41.46 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=13.2
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999765
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.019 Score=49.33 Aligned_cols=41 Identities=7% Similarity=0.286 Sum_probs=24.5
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCce-EEEEeeeCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ-VGVFSATMP 224 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~-~i~lSAT~~ 224 (413)
.+++|+||+|.+.. .....+..+++....... +++++++..
T Consensus 91 ~~~liiDdi~~l~~-~~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 91 AELYAVDDVERLDD-AQQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred CCEEEEeChhhcCc-hHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 57899999998643 234445555554433333 466666653
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=50.79 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=62.3
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCc-chHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 015093 107 LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGT-SVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIR 184 (413)
Q Consensus 107 ~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
+.+.+||||.+--.+....+.++.+... +..+.-+.... ...++...+. ...+|.|+||+++..+++...+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 4578999999877788888888876311 22333333222 3444444444 4679999999999999999999999999
Q ss_pred EEEEccchh
Q 015093 185 MFVLDEADE 193 (413)
Q Consensus 185 ~iIiDE~h~ 193 (413)
+||+|--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998773
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.032 Score=51.04 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=30.1
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...+++||||+|.+. ..-...+.+.+...+.+..++++|..+
T Consensus 140 g~~rVviIDeAd~l~-~~aanaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 140 GNWRIVIIDPADDMN-RNAANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CCceEEEEEchhhcC-HHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 347899999999874 334566777788776677677776444
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.02 Score=50.77 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=16.9
Q ss_pred CCcEEEeCCCCCchhHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~ 97 (413)
+.++++.||+|+|||..+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999877443
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.015 Score=56.60 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=18.3
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
..|+.+|.|+|||.++.+.+-...
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcc
Confidence 378899999999998865554443
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.032 Score=52.85 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=25.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.+++.||+|+|||..+ .++...+.....+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 35899999999999765 344444444333447777764
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.015 Score=56.91 Aligned_cols=39 Identities=8% Similarity=0.240 Sum_probs=27.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++||||+|.+... -...+.+.+...+....+|+.+
T Consensus 131 a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 44689999999987433 3455666677777677666654
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.024 Score=49.78 Aligned_cols=40 Identities=20% Similarity=0.454 Sum_probs=25.9
Q ss_pred ccEEEEccchhhhccCc--HHHHHHHHhhCCC--CceEEEEeeeC
Q 015093 183 IRMFVLDEADEMLSRGF--KDQIYDIFQHLPG--KIQVGVFSATM 223 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~--~~~~i~lSAT~ 223 (413)
++++||||+|++..... ...+...++.+.+ ...+|++ +|.
T Consensus 146 vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt~ 189 (302)
T PF05621_consen 146 VRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GTR 189 (302)
T ss_pred CcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-ccH
Confidence 68999999999775443 3445555666655 4556654 554
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.064 Score=51.10 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-ccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
.|+.+.+.||+|+|||......+..... ...+.++.++. .+.-.. ..+.++.+....++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRig--A~EQLk~ya~iLgv~v~~------------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVG--GREQLHSYGRQLGIAVHE------------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEeccccccc--HHHHHHHhhcccCceeEe-------------
Confidence 4567889999999999876444333222 22122444443 221111 112233333333332211
Q ss_pred HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
..+...+...+... .++++|+||.+-...... ....+..+.. ......++.++++...
T Consensus 413 --------a~d~~~L~~aL~~l----~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~ 471 (559)
T PRK12727 413 --------ADSAESLLDLLERL----RDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHF 471 (559)
T ss_pred --------cCcHHHHHHHHHHh----ccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCCh
Confidence 11333444444432 236899999998642211 1122222222 2233457778888753
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.018 Score=56.58 Aligned_cols=38 Identities=8% Similarity=0.257 Sum_probs=25.9
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++||||+|.+... ....+.+.+...+....+|+.|
T Consensus 119 k~KVIIIDEad~Ls~~-A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CcEEEEEECccccCHH-HHHHHHHHHHhCCCCcEEEEEe
Confidence 4689999999986432 3445666676666666666554
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.021 Score=55.43 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=24.6
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+... ....+.+.+...+....+|++|
T Consensus 119 ~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 3689999999987432 3455666666666555555544
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.048 Score=47.92 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=24.8
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
.+++.|++|+|||..+. ++...+... +..++++. ...+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~--~~~v~~~~-~~~ll~ 155 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK--GVPVIFVN-FPQLLN 155 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc--CCeEEEEE-HHHHHH
Confidence 49999999999997754 444444433 23454443 344444
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.052 Score=49.25 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=24.9
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++|++||+|.+... ....+...+...+....+|+.+
T Consensus 103 ~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 103 FKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred ceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 579999999987432 2445666666666666666544
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.066 Score=52.25 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=79.6
Q ss_pred CcHHHHhhhhhhh---CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc--
Q 015093 63 PSAIQQRGIVPFC---KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV-- 137 (413)
Q Consensus 63 ~~~~Q~~~~~~~~---~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~-- 137 (413)
|.|.-.+-++.+. +.+-.++.+|-|-|||.+..+.+...+.. .+.+++|..|...-+.+..+.++......+.
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 3444444444433 34558889999999998875554433321 2458999999999899888888777653321
Q ss_pred ------eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH----H----HHHcCCCCCCCccEEEEccchhhhccCcHHHH
Q 015093 138 ------KVHACVGGTSVREDQRILSAGVHVVVGTPGRVF----D----MLRRQSLRPDYIRMFVLDEADEMLSRGFKDQI 203 (413)
Q Consensus 138 ------~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~----~----~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~ 203 (413)
.+....|+. ..|.+..|.... . .-......-..++++|+|||+.+.... ...+
T Consensus 248 ~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~~-l~aI 314 (752)
T PHA03333 248 WFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPGA-LLSV 314 (752)
T ss_pred ccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHHH-HHHH
Confidence 111111211 122332221111 0 000122232346899999999874432 2223
Q ss_pred HHHHhhCCCCceEEEEeeeCC
Q 015093 204 YDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 204 ~~~~~~~~~~~~~i~lSAT~~ 224 (413)
..++.. .+.+++.+|.+..
T Consensus 315 lP~l~~--~~~k~IiISS~~~ 333 (752)
T PHA03333 315 LPLMAV--KGTKQIHISSPVD 333 (752)
T ss_pred HHHHcc--CCCceEEEeCCCC
Confidence 333333 3566777887764
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.096 Score=45.86 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=66.9
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc-c--HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP-T--RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
..+.+.+++|+|||..+...+.. +.. . +.++.++.. + .+...||...... .+..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~-l~~-~-~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~-------------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ-FHG-K-KKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVI-------------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH-HHH-c-CCeEEEEecCCCCHHHHHHHHHHhhh----cCceEE--------------
Confidence 56899999999999866443332 222 2 224444433 2 2345554433222 222221
Q ss_pred HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCCCCceEEEEeeeCCh-hHHHHHH
Q 015093 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLPGKIQVGVFSATMPP-EALEITR 232 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~-~~~~~~~ 232 (413)
...+++.+...+..-. ....+++|++|-+-+... ......+.+++....+...++.+|||... +..+.++
T Consensus 135 -------~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~ 206 (270)
T PRK06731 135 -------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 206 (270)
T ss_pred -------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHH
Confidence 1134445544443211 112368999999876532 22334455555555444457779998754 4555555
Q ss_pred Hh
Q 015093 233 KF 234 (413)
Q Consensus 233 ~~ 234 (413)
.+
T Consensus 207 ~f 208 (270)
T PRK06731 207 NF 208 (270)
T ss_pred Hh
Confidence 54
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.043 Score=47.97 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=27.6
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
+..+.++++.||+|+|||..+........ . .+..++++. ...+..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~--~G~~v~~~~-~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-R--AGIKVRFTT-AADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEe-HHHHHH
Confidence 45678899999999999977654433222 2 233566554 334443
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.029 Score=49.80 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.2
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
+.++++.||+|+|||..+-
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998763
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.054 Score=46.46 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=33.9
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..+..+++.+++|+|||..++..+...+.+ +.++++++.. .-..+..+.+.++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 346679999999999998765544443332 3477888744 3345555555544
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.03 Score=54.04 Aligned_cols=38 Identities=8% Similarity=0.238 Sum_probs=26.7
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+... ....+.+.+...+....+|+.|
T Consensus 119 ~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 4689999999987433 3456667777766666666555
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.059 Score=54.23 Aligned_cols=18 Identities=44% Similarity=0.447 Sum_probs=14.6
Q ss_pred EEEeCCCCCchhHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSG 97 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~ 97 (413)
++|.|+||+|||.+.-..
T Consensus 784 LYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSV 801 (1164)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 469999999999886443
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0084 Score=49.84 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=25.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEE
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
...+.||+|||+.+.+. .+..+.+......+..++.+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhh
Confidence 34689999999987543 46667777666666555443
|
|
| >PTZ00293 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.029 Score=46.77 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=27.3
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
|.=-++.||++||||.-.+..+...... +.+++++-|...
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc---CCceEEEEeccc
Confidence 3446889999999997665554443322 347888888654
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.078 Score=49.43 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=62.1
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
++.+.+.||+|+|||......+.............++.+.+.-. ...+.+..++..+++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~--------------- 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRS--------------- 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch--hHHHHHHHHHHHcCCceec---------------
Confidence 45589999999999977643332222111112234555554322 1223344444434443322
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeeeCChhH-HHHHHHh
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSATMPPEA-LEITRKF 234 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~-~~~~~~~ 234 (413)
+.++..+...+.. +.+.+.+++|.+-+.... .....+..+.........++.+|||..... .+....+
T Consensus 254 ------v~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 254 ------IKDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred ------CCCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh
Confidence 2222233222222 334688999987533211 112233333222223345788999976543 3334333
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.096 Score=48.55 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=62.4
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE-cccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL-APTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl-~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
-+++.+|+|+|||.+....+...... . +.++.++ +.+.-.+ ....++.++...++.+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~-~-G~~V~Lit~Dt~R~a--A~eQLk~yAe~lgvp~~~---------------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH-M-GKSVSLYTTDNYRIA--AIEQLKRYADTMGMPFYP---------------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-c-CCeEEEecccchhhh--HHHHHHHHHHhcCCCeee----------------
Confidence 37889999999998876555433222 1 2244433 3332111 122344444433332211
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh-ccCcHHHHHHHHhhCC---CCceEEEEeeeCChh-HHHHHH
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML-SRGFKDQIYDIFQHLP---GKIQVGVFSATMPPE-ALEITR 232 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~---~~~~~i~lSAT~~~~-~~~~~~ 232 (413)
+..+..+...+.. ..+++|++|=+.... +......+.+++.... +...++.+|||.... ......
T Consensus 285 -----~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 285 -----VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred -----hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 1112333343432 346899999766442 2223344455554432 224577899998763 333333
Q ss_pred H
Q 015093 233 K 233 (413)
Q Consensus 233 ~ 233 (413)
.
T Consensus 355 ~ 355 (432)
T PRK12724 355 A 355 (432)
T ss_pred H
Confidence 3
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.048 Score=48.58 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=42.5
Q ss_pred ccCccCCC-CCHHHHHHHHh--CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 39 YDSFDSMG-LKENLLRGIYA--YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 39 ~~~~~~~~-l~~~~~~~l~~--~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
-.+|+..| |.+++.+.-.. .....|--++.-.++ ..+.+|+.||+|+|||+.+ .....+.+ -.++=+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLA------kAVA~~T~-AtFIrv 216 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLA------KAVANQTD-ATFIRV 216 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHH------HHHHhccC-ceEEEe
Confidence 34455553 66666554443 334445555555553 3578999999999999875 22233334 334444
Q ss_pred ccHHHHH
Q 015093 116 PTRELAQ 122 (413)
Q Consensus 116 P~~~l~~ 122 (413)
.-.+|++
T Consensus 217 vgSElVq 223 (406)
T COG1222 217 VGSELVQ 223 (406)
T ss_pred ccHHHHH
Confidence 4556664
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.027 Score=54.60 Aligned_cols=39 Identities=8% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++||||+|.+... -...+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 34689999999987543 2445666666666666666655
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.035 Score=53.97 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=55.9
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.++|.|++|+|||... .++...+.....+.+++++.. ..+.++....+.. +
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~-----~---------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD-----G---------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh-----c----------------------
Confidence 3899999999999654 344444433333446666654 4455443332221 0
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhCCC-CceEEEEeeeC
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPG-KIQVGVFSATM 223 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~~~-~~~~i~lSAT~ 223 (413)
..+.|... +..+++|+|||+|.+.... ....+..+++.+.. +.++| +|+..
T Consensus 367 ------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~II-ITSd~ 419 (617)
T PRK14086 367 ------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIV-LSSDR 419 (617)
T ss_pred ------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEE-EecCC
Confidence 01112211 1236899999999875433 23455566655544 34555 45444
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.029 Score=62.59 Aligned_cols=62 Identities=29% Similarity=0.296 Sum_probs=44.2
Q ss_pred CCCcHHHHhhhhhhhCCC--cEEEeCCCCCchhHHHH---HHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 61 EKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFC---SGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~--~~lv~~~tGsGKT~~~~---~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
..+++-|..++..++.+. -++|.|+.|+|||...- -++.+.+.. .+.+++.+.||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHH
Confidence 379999999999988764 47889999999997651 223333322 245788899996655443
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.027 Score=52.28 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=27.1
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...+++||||+|.+... ....+.+.+..-+.+..+|+.|.++
T Consensus 116 ~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 116 GRWRIVVIEDADRLTER-AANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCeEEEEECCh
Confidence 34689999999998433 3455666666666565555444443
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.066 Score=50.32 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=60.3
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
.++++|++|+|||.++...+. .+... +.+++++..-.-. ....+.++.++...++.+.......
T Consensus 97 vI~lvG~~GsGKTTtaakLA~-~L~~~--g~kV~lV~~D~~R-~aa~eQL~~la~~~gvp~~~~~~~~------------ 160 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLAR-YFKKK--GLKVGLVAADTYR-PAAYDQLKQLAEKIGVPFYGDPDNK------------ 160 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHHc--CCeEEEecCCCCC-HHHHHHHHHHHHHcCCcEEecCCcc------------
Confidence 488899999999988754443 33322 2355554432111 1123334444433344322111000
Q ss_pred CcEEEeChHH-HHHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHH
Q 015093 159 VHVVVGTPGR-VFDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRK 233 (413)
Q Consensus 159 ~~Iii~T~~~-l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~ 233 (413)
.+.. +...+.... ..++||+|.+-+... ...-..+..+.....+..-++.++|+...+.....+.
T Consensus 161 ------d~~~i~~~al~~~~----~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 161 ------DAVEIAKEGLEKFK----KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred ------CHHHHHHHHHHHhh----cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 1111 122222211 127889998854321 1222334444444444555677777776544444444
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.043 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.017 Sum_probs=17.9
Q ss_pred EEEeCCCCCchhHHHHHHHHHhc
Q 015093 80 VIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
.|++||+|+|||.++...+-...
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999988765544443
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.051 Score=52.81 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=77.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc--CceEEEEECCcchHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM--GVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (413)
+-.++..|--.|||+... +++..+.....+.+++|+.|.+..++..++++..+.... +..+....| ... -. .+
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--~i-~f 329 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--SF-SF 329 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--EE-Ee
Confidence 447889999999998765 444433333335699999999999999999988765422 111212222 110 00 00
Q ss_pred hcC--CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 156 SAG--VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 156 ~~~--~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
.++ ..|.+.+ ........-..++++|+|||+.+....+...+ ..+... ++++|.+|.|-+
T Consensus 330 ~nG~kstI~FaS------arntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~~--n~k~I~ISS~Ns 391 (738)
T PHA03368 330 PDGSRSTIVFAS------SHNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQT--NCKIIFVSSTNT 391 (738)
T ss_pred cCCCccEEEEEe------ccCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhcc--CccEEEEecCCC
Confidence 111 1333332 11123344456899999999987543333222 222222 778999998864
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.049 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=17.2
Q ss_pred CCcEEEeCCCCCchhHHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i 98 (413)
++-+.+.||||+|||.+....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4458899999999998865444
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.019 Score=48.00 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.4
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++++.||+|.|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 35899999999999765
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.024 Score=53.94 Aligned_cols=19 Identities=32% Similarity=0.190 Sum_probs=15.6
Q ss_pred EEEeCCCCCchhHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i 98 (413)
.++.||+|+|||..+-+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999998775433
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.12 Score=51.66 Aligned_cols=130 Identities=15% Similarity=0.070 Sum_probs=65.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
+-+.+.||||+|||.+....+.... ....+.++.+++.-.... -..+.++.++...++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv------------------ 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRI-GALEQLRIYGRILGVPV------------------ 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccch-HHHHHHHHHHHhCCCCc------------------
Confidence 4478999999999987644333221 222222444444322221 12333444444333322
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeeeCChhH-HHHHHHh
Q 015093 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSATMPPEA-LEITRKF 234 (413)
Q Consensus 158 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~-~~~~~~~ 234 (413)
..+.+++.+...+... .+.++|+||=+-+.... .....+..+.....+...++.++||..... .+....|
T Consensus 246 ---~~~~~~~~l~~al~~~----~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 246 ---HAVKDAADLRFALAAL----GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred ---cccCCHHHHHHHHHHh----cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 1233566665555532 23578999988765322 122333333333334456778888876433 3344444
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.032 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.090 Sum_probs=17.0
Q ss_pred EEEeCCCCCchhHHHHHHHHHh
Q 015093 80 VIQQAQSGTGKTATFCSGILQQ 101 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~ 101 (413)
.|++||.|+|||.++-..+-..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999998875544433
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.027 Score=54.14 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.0
Q ss_pred EEEeCCCCCchhHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~ 99 (413)
.++.||+|+|||.++...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~ 58 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAM 58 (504)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 59999999999988754443
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.077 Score=48.40 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=59.3
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-ccHH--HHHHHHHHHHHhhcccCceEEEEECCcchHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PTRE--LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~~~--l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
++.+++.||+|+|||......+... ... +.++.+++ .+.- -+.| ++.++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~------------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQ----FQGYADKLDVELI------------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHH----HHHHhhcCCCCEE-------------
Confidence 4558899999999998765544432 222 22444444 3321 2334 3444333333221
Q ss_pred HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 154 ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 154 ~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
...+|+.+...+.... ....+++|++|=+-+... ......+..+........-++.+||+..
T Consensus 266 --------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 266 --------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred --------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 2235555554443211 112368999998765431 1223334444444433333556677654
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.059 Score=44.67 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=24.7
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
....++|+||+|.+... ....+.+.+...++...+++++
T Consensus 95 ~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred CCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEE
Confidence 34689999999988533 2445556666655555555443
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.03 Score=53.65 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=16.9
Q ss_pred cEEEeCCCCCchhHHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~ 99 (413)
..++.||.|+|||.++-+.+.
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988754443
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.038 Score=53.20 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999997753
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.034 Score=52.61 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=25.4
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
+.+++.||+|+|||..+- ++...+... +.+++++.. ..+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS-ELFTE 182 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH-HHHHH
Confidence 458999999999996643 444444332 346777654 34433
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.039 Score=49.90 Aligned_cols=146 Identities=12% Similarity=0.068 Sum_probs=72.2
Q ss_pred CcHHHHhhhhhhhC--C---CcEEEeCCCCCchhHHHHHHHHHhcccccC-ceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 63 PSAIQQRGIVPFCK--G---LDVIQQAQSGTGKTATFCSGILQQLDYESL-QCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~--~---~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~-~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
+||||...+..+.. + ...++.||.|.|||..+...+...++.... +....=-| ..++.+.....
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C----------~~C~~~~~~~H 71 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGEC----------MSCHLFGQGSH 71 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcC----------HHHHHHhcCCC
Confidence 36777777777664 2 237899999999998876555444433221 10111111 12333332222
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceE
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQV 216 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~ 216 (413)
-.+..+.......... .....|-|-....+.+.+...+.. ...+++|+|++|.+ +......+.+++...+....+
T Consensus 72 pD~~~~~p~~~~~~~g---~~~~~I~id~iR~l~~~~~~~p~~-~~~kV~iiEp~~~L-d~~a~naLLk~LEep~~~~~~ 146 (325)
T PRK08699 72 PDFYEITPLSDEPENG---RKLLQIKIDAVREIIDNVYLTSVR-GGLRVILIHPAESM-NLQAANSLLKVLEEPPPQVVF 146 (325)
T ss_pred CCEEEEeccccccccc---ccCCCcCHHHHHHHHHHHhhCccc-CCceEEEEechhhC-CHHHHHHHHHHHHhCcCCCEE
Confidence 2233333211000000 000123222223333333333322 34689999999976 444567777788877666555
Q ss_pred EEEeeeC
Q 015093 217 GVFSATM 223 (413)
Q Consensus 217 i~lSAT~ 223 (413)
|++|-.+
T Consensus 147 Ilvth~~ 153 (325)
T PRK08699 147 LLVSHAA 153 (325)
T ss_pred EEEeCCh
Confidence 6544443
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.17 Score=47.36 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=30.4
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
-+.++|++|+|||.+..-.+.. +. .. +.++++++.-.... ...++++.++...++.+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~-~~-G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQ-RK-GFKPCLVCADTFRA-GAFDQLKQNATKARIPFY 159 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HH-HC-CCCEEEEcCcccch-hHHHHHHHHhhccCCeEE
Confidence 3788999999999876544432 22 22 33555555422111 122334444444455443
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >COG3972 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.038 Score=51.24 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
..+-..|+++.-..-.|.. .|.+=.|||||....+-+.. +..+++..++++.+-|+.|+.++.+.+.+++
T Consensus 161 anfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 161 ANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred hcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 3455678877766666665 78889999999876554443 4455566799999999999999988888776
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.038 Score=51.05 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=14.8
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
..++.||+|+|||..+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARI 55 (355)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999977643
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.032 Score=54.80 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=57.7
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
.|++||.|.|||.++...+-...+....+ ..-+.-++..-+. ....|+.+.......+..+.+....
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~-~~~~~~~~~~~Cg-~C~sC~~~~~g~~~n~~~~d~~s~~----------- 107 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAVNCQRMID-DPVYLQEVTEPCG-ECESCRDFDAGTSLNISEFDAASNN----------- 107 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCcCC-ccccccccCCCCc-cCHHHHHHhccCCCCeEEecccccC-----------
Confidence 78999999999988865554443322110 0000000001011 1123444444344444444432211
Q ss_pred cEEEeChHHHHHH---HHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 160 HVVVGTPGRVFDM---LRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 160 ~Iii~T~~~l~~~---~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+.+.+. +...++ ....+++||||+|.+... -...+.+.+...+...-+|+++
T Consensus 108 -----~vd~Ir~l~e~~~~~P~-~~~~KVvIIdEad~Lt~~-a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 108 -----SVDDIRQLRENVRYGPQ-KGRYRVYIIDEVHMLSTA-AFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred -----CHHHHHHHHHHHHhhhh-cCCCEEEEEeChhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 01222222 222222 234689999999988433 2445556666665555555544
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.071 Score=46.22 Aligned_cols=40 Identities=20% Similarity=0.043 Sum_probs=28.2
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..|.-++|.|++|+|||...+..+...+... +.++++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 3466789999999999987665555544331 347888874
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.038 Score=53.10 Aligned_cols=39 Identities=10% Similarity=0.290 Sum_probs=27.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... ....+.+.+...++...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 34789999999987432 3556677777777777666555
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.018 Score=51.71 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=37.8
Q ss_pred CcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 63 PSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
+.+.|...+..+.. +++++|+|+||||||... .+++..+.......+++.+=...++
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 55677777666544 567999999999999764 4555554332334477776666665
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.026 Score=48.27 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=52.6
Q ss_pred cCCCCCHHHHHHHHhCCCC----------CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEE
Q 015093 43 DSMGLKENLLRGIYAYGFE----------KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQAL 112 (413)
Q Consensus 43 ~~~~l~~~~~~~l~~~~~~----------~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~l 112 (413)
.+.++++.+.....+.||. .++| ..+..--+..|.-++|.|++|+|||..++..+.+.... +.+++
T Consensus 21 ~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vl 96 (237)
T PRK05973 21 QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGV 96 (237)
T ss_pred cCCcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEE
Confidence 3456666666666666664 2333 22233344456679999999999998877666555433 34677
Q ss_pred EEcccHHHHHHHHHHHHHh
Q 015093 113 VLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 113 vl~P~~~l~~q~~~~~~~~ 131 (413)
|++-- +-.+|..+.+.++
T Consensus 97 yfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 97 FFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEEe-CCHHHHHHHHHHc
Confidence 77643 3356677777665
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.017 Score=51.92 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=40.8
Q ss_pred HHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 53 RGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 53 ~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
+.+.+.|. +.+.|.+.+.. +..+++++|.|+||||||.. +.+++..+.......+++++-.+.++
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 34444444 45667777765 44567899999999999955 34444443222233477777776665
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.024 Score=52.09 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=26.5
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+..++|+||||||||... ..++..+.......+++.+=...+
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEEecCch
Confidence 3456899999999999764 555555543332335555533333
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.041 Score=49.06 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=28.9
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
+.++++|+|+|||..+-+.+ .-. +....+.+=+..+.+-.++....+++
T Consensus 164 SmIlWGppG~GKTtlArlia--~ts-k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIA--STS-KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHH--hhc-CCCceEEEEEeccccchHHHHHHHHH
Confidence 48999999999997652222 111 12223566666666666555554443
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.035 Score=54.13 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHH-HHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIE-KVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~-~~~~~~~~ 133 (413)
..+|||.+..+.+... +.+.+..++-+|||.+.+..+...+.... ..++++.||...+.++. ..+..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 6789999999988775 46999999999999976554444333332 48999999999998875 55555443
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.069 Score=53.78 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..|.+.++.+++ .++.+..++|+++..+|.+.++.+.+|+.+|+|+|. .+...+.++++..||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 456899999999999888777765 368899999999999999999999999999999996 555667788888887
Q ss_pred EcC
Q 015093 353 NYD 355 (413)
Q Consensus 353 ~~~ 355 (413)
+-.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 644
|
|
| >COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.037 Score=49.07 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=44.5
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+...++-|..-++++.++.-++-.+|.|+|||+.+...+.+.+....-. +++..=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~-rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR-RIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccc-eeeecCc
Confidence 4567888999999998888889999999999988877777777665543 6666666
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.029 Score=50.13 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=36.9
Q ss_pred CcHHHHhhhhhhh-CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 63 PSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 63 ~~~~Q~~~~~~~~-~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
+.+-|...+..+. .+++++|+|+||||||... .+++..+.......+++++=...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 3444555555544 4678999999999999764 4555555433234477777776665
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.057 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=17.8
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
.+++|.||+|+|||.+. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 56999999999999765 3344333
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.15 Score=51.28 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=63.7
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
++++||.+|+++.+.++.+.|++. +..+..+||+++..+|.+......+|+.+|+|+|...- -..+.++..+|..+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 568999999999999999999874 67899999999999999998889999999999997332 245667777776553
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.055 Score=50.50 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=26.5
Q ss_pred CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHH
Q 015093 63 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
+.......+..+..++++++.+|+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444556667777789999999999999998764
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.074 Score=50.46 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||...+..+..... .+.+++|+.-. +-..|......++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 345899999999999876555444332 23478888754 4455666555554
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.11 Score=43.85 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.9
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
++++.|++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999997663
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.091 Score=42.28 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=15.4
Q ss_pred cEEEeCCCCCchhHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i 98 (413)
-++|.|++|+|||......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 37899999999997654333
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.076 Score=53.36 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.2
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999997663
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.095 Score=49.61 Aligned_cols=131 Identities=16% Similarity=0.101 Sum_probs=63.5
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
+++-.+--.+.+.-+..|.-++|.|+||+|||..++..+...... .+.++++++. ..-..|+..++-.... ++..
T Consensus 177 i~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSl-Em~~~~l~~Rl~~~~~--~v~~ 251 (421)
T TIGR03600 177 LSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSL-EMSAEQLGERLLASKS--GINT 251 (421)
T ss_pred eeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC-CCCHHHHHHHHHHHHc--CCCH
Confidence 333333333334344456668999999999998776555444322 1336777763 3345555444433221 2222
Q ss_pred EEEE-CCcchHHHHHHH-----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 140 HACV-GGTSVREDQRIL-----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 140 ~~~~-~~~~~~~~~~~~-----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
..+. |......+.+.. ....++.|. |.+.+...+++.......+++||||=.|.+.
T Consensus 252 ~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 252 GNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 2221 222211211111 112345553 3444444443221112247899999888765
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.018 Score=53.88 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=28.0
Q ss_pred cHHHHhhhhhhhCCCc--EEEeCCCCCchhHHHHHHHHHhcccc
Q 015093 64 SAIQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYE 105 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~--~lv~~~tGsGKT~~~~~~i~~~l~~~ 105 (413)
.+.|...+..+..... ++|.||||||||.+ +..++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 4556666656555433 88999999999976 46666665443
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.024 Score=50.33 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=46.8
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCCC-cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
++.......-..+..+.+-|-..+..+...+ ++++++.||||||... -++...... ..+++.+=.+.+|.
T Consensus 143 ~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~~---~eRvItiEDtaELq 213 (355)
T COG4962 143 PKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFIDS---DERVITIEDTAELQ 213 (355)
T ss_pred ccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCCC---cccEEEEeehhhhc
Confidence 3333333344455678889999998887766 8999999999999653 333333322 22788887776664
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.076 Score=48.97 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=28.9
Q ss_pred CccEEEEccchhhhcc-CcHHHHHHHHhhCCCCc-eEEEEeeeCCh
Q 015093 182 YIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKI-QVGVFSATMPP 225 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~-~~i~lSAT~~~ 225 (413)
+++++++|+++.+... .....+..+++.+.... ++++.|-.+|.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~ 220 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPK 220 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCch
Confidence 3789999999987655 34556667777665544 55555544443
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.064 Score=52.35 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEE
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
...+++|+||+|.+... ....+.+.+...+....+++
T Consensus 118 ~~~KVvIIDEa~~Ls~~-a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNS-AFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred CCCEEEEEEChhhcCHH-HHHHHHHhhccCCCCEEEEE
Confidence 44689999999987432 23445555555444444443
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=45.90 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=18.6
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
++.+++.||+|+|||..+. ++...+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4569999999999997654 3333333
|
|
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.17 Score=48.41 Aligned_cols=117 Identities=19% Similarity=0.086 Sum_probs=59.9
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-EC-CcchHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VG-GTSVRED 151 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 151 (413)
+..|.-++|.|.||.|||..++-.+...... . +..+++.+. ..-..|+..++-.... ++....+ .| ..+...+
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~-~-g~~Vl~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA-S-EKPVLVFSL-EMPAEQIMMRMLASLS--RVDQTKIRTGQNLDQQDW 292 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-c-CCeEEEEec-cCCHHHHHHHHHHhhC--CCCHHHhccCCCCCHHHH
Confidence 4445568999999999998664444333222 1 335666654 4556666665544322 2222222 22 2222222
Q ss_pred HHH------HhcCCcEEE-----eChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 152 QRI------LSAGVHVVV-----GTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 152 ~~~------~~~~~~Iii-----~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.+. +....++.| .|+..+....++.......+++||||=.+.+.
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 211 122344666 35555554443211111247899999888764
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.067 Score=52.84 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=18.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
...|+.||.|+|||..+...+-...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhc
Confidence 3479999999999988755444433
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.061 Score=50.72 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
.++++.||+|+|||..+-
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999997763
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.18 Score=40.20 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=36.3
Q ss_pred CCccEEEEccchhhhccC--cHHHHHHHHhhCCCCceEEEEeeeCChhHHHH
Q 015093 181 DYIRMFVLDEADEMLSRG--FKDQIYDIFQHLPGKIQVGVFSATMPPEALEI 230 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~ 230 (413)
..++++|+||+-.....+ -...+..+++..|....+|+.+-.+++.+.+.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 457999999999775544 34667788888888888887666666555443
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.076 Score=46.59 Aligned_cols=145 Identities=19% Similarity=0.132 Sum_probs=72.7
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECC-cchHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGG-TSVREDQR 153 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 153 (413)
..|.-++|.|+||.|||..++-.+.+.+... +..+++++.--. ..+...++-.... ++....+..+ ........
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~-~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~ 91 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMS-EEELAARLLARLS--GVPYNKIRSGDLSDEEFER 91 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS--HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCC-HHHHHHHHHHHhh--cchhhhhhccccCHHHHHH
Confidence 3455689999999999988776666655443 247888876322 3333333322221 2211111112 11111111
Q ss_pred HH-----hcCCcEEE-e----ChHHHHHHHHcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHhhCC-----CCc
Q 015093 154 IL-----SAGVHVVV-G----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR----GFKDQIYDIFQHLP-----GKI 214 (413)
Q Consensus 154 ~~-----~~~~~Iii-~----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~----~~~~~~~~~~~~~~-----~~~ 214 (413)
.. .....+++ . |++.+...+.........+++||||=.|.+... +....+..+.+.+. .++
T Consensus 92 ~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 171 (259)
T PF03796_consen 92 LQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNI 171 (259)
T ss_dssp HHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 11 11234444 2 445555554432222245789999999987653 23333333322221 167
Q ss_pred eEEEEeeeCC
Q 015093 215 QVGVFSATMP 224 (413)
Q Consensus 215 ~~i~lSAT~~ 224 (413)
.++++|....
T Consensus 172 ~vi~~sQlnr 181 (259)
T PF03796_consen 172 PVIALSQLNR 181 (259)
T ss_dssp EEEEEEEBSG
T ss_pred eEEEccccCh
Confidence 7887777653
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.29 Score=45.09 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=19.1
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYE 105 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~ 105 (413)
.++++.|+||+|||.+.- -++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHhh
Confidence 359999999999998764 344444443
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.11 Score=46.79 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=38.7
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
.|-|-....+.+.+...+.. ...+++|+|++|.+. ..-...+.+.+..-| +..++++|..+
T Consensus 103 ~I~id~ir~i~~~l~~~p~~-~~~kVvII~~ae~m~-~~aaNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLE-APRKVVVIEDAETMN-EAAANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred cCcHHHHHHHHHHHccCccc-CCceEEEEEchhhcC-HHHHHHHHHHHhCCC-CCeEEEEECCh
Confidence 34444555555555555443 347999999999873 334566777777777 56566555544
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.11 Score=47.28 Aligned_cols=42 Identities=10% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...+++||||+|.+... ....+.+.+..-|+...++++|..+
T Consensus 109 ~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 109 SNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred cCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeCCh
Confidence 34689999999987433 4566777777777777666644433
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.043 Score=48.66 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=17.0
Q ss_pred CcEEEeCCCCCchhHHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~ 99 (413)
+.+++.||||+|||.+....+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999987654443
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.29 Score=42.14 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||..+...+...+.. +.+++++.-... ..+..+.+.++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 5568999999999998776655554432 347777776433 45566666665
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.1 Score=51.58 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=22.3
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEE
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGV 218 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (413)
...+++||||+|.+... -...+.+.+...+....+|+
T Consensus 119 ~~~kVvIIDEa~~L~~~-a~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred CCeEEEEEeChHhCCHH-HHHHHHHHHhcCCCCeEEEE
Confidence 34689999999987432 23444555555554444443
|
|
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.084 Score=43.24 Aligned_cols=141 Identities=17% Similarity=0.202 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH-HHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA-QQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
....+.+..++|.|||.+++-.++..+..+. +++++-=.+.-. ..-...++++ .++.......+.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~~~~---- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFTWET---- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCcccC----
Confidence 4567999999999999998877776655443 666654333210 0111222222 1222222111111000
Q ss_pred HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc--HHHHHHHHhhCCCCceEEEEeeeCChhHHH
Q 015093 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF--KDQIYDIFQHLPGKIQVGVFSATMPPEALE 229 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (413)
....--............. .+....+++||+||+-...+.++ ...+..++...|....+|+..-.+++.+.+
T Consensus 91 --~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 91 --QDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred --CCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0000000001111111111 12234479999999998776553 456777888888777777555555555444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.15 Score=53.55 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=33.0
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
--+||+|++|.+.+......+..+++..+.+..+|+.|-+.+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 358999999988655556678888888888888888887743
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.058 Score=54.48 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC-----CeeEe-ecCCCCHHHHHHHHHHHhcCCCeEEEEeCc
Q 015093 266 KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD-----HTVSA-THGDMDQNSRDIIMREFRSGSSRVLITTDL 338 (413)
Q Consensus 266 ~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vli~t~~ 338 (413)
..-.+..+.-...++++++.+|+...+.++++.|++.. ..+.. ||+.++..++++.++.+.+|..+|+|+|+.
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 45556666666677899999999999999999987642 43333 999999999999999999999999999974
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.047 Score=46.21 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.5
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||...
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999654
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.23 Score=46.71 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.3
Q ss_pred EEEeCCCCCchhHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~ 99 (413)
+++++++|+|||.++.-.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78899999999987755444
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.16 Score=44.77 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred CcHHHHhhhhhhh----CCC-cEEEeCCCCCchhHHHH
Q 015093 63 PSAIQQRGIVPFC----KGL-DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 63 ~~~~Q~~~~~~~~----~~~-~~lv~~~tGsGKT~~~~ 95 (413)
+.+.+.+++..+. .+. .+++.||+|+|||...-
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344444554432 333 48899999999997653
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.086 Score=48.59 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=32.2
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||...+..+...... +.+++|+.-. +-..|......++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC-cCHHHHHHHHHHc
Confidence 4558999999999998765544433222 3478888754 3345555555554
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.16 Score=49.10 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
.++++|+.+|++..+.++++.|++. +..+..+||+++..+|.+......+|+.+|+|+|...-. ..++++..||+.+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 3568999999999999999999864 567889999999999999999899999999999974322 3466777777654
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.059 Score=51.35 Aligned_cols=84 Identities=26% Similarity=0.196 Sum_probs=53.9
Q ss_pred CHHHHHHHHhCCCCCCcH-------HHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEccc
Q 015093 48 KENLLRGIYAYGFEKPSA-------IQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLAPT 117 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~-------~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~P~ 117 (413)
.+-+...|++..=..++. -|-+++.. .+++-++|+|..|||||.+++.-+...+...+ .+..+||+.|+
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN 269 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN 269 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCc
Confidence 445567777664444443 24444421 22444899999999999999766655443322 23359999999
Q ss_pred HHHHHHHHHHHHHhh
Q 015093 118 RELAQQIEKVMRALG 132 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~ 132 (413)
+....-..+.+-.++
T Consensus 270 ~vFleYis~VLPeLG 284 (747)
T COG3973 270 RVFLEYISRVLPELG 284 (747)
T ss_pred HHHHHHHHHhchhhc
Confidence 998877666665554
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.053 Score=49.72 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
.++.++|+||||||||... .+++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3566999999999999764 55555554
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.29 Score=43.13 Aligned_cols=130 Identities=22% Similarity=0.258 Sum_probs=61.4
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-cc-HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PT-RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
+-+.+.+|+|+|||.+....+... .. . +.+++++. .+ +.-+ .+.++.+....++.+. ..+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~-~-g~~V~li~~D~~r~~a---~~ql~~~~~~~~i~~~--~~~~~-------- 136 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK-Q-GKSVLLAAGDTFRAAA---IEQLEEWAKRLGVDVI--KQKEG-------- 136 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh-c-CCEEEEEeCCCCCHHH---HHHHHHHHHhCCeEEE--eCCCC--------
Confidence 347778999999998775554433 22 2 33565554 32 2222 2233334333343322 11111
Q ss_pred hcCCcEEEeChHHH-HHHHHcCCCCCCCccEEEEccchhhhc-cCcHHHHHHHHhhCC------CCceEEEEeeeCChhH
Q 015093 156 SAGVHVVVGTPGRV-FDMLRRQSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLP------GKIQVGVFSATMPPEA 227 (413)
Q Consensus 156 ~~~~~Iii~T~~~l-~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~------~~~~~i~lSAT~~~~~ 227 (413)
..|... ...+.. .....+++|++|=+-+... ......+.++.+..+ ..-.++.++||...+.
T Consensus 137 --------~dp~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 137 --------ADPAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred --------CCHHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 001111 111111 0123368999998876532 122233444443333 3455778899876544
Q ss_pred HHHHHH
Q 015093 228 LEITRK 233 (413)
Q Consensus 228 ~~~~~~ 233 (413)
......
T Consensus 207 ~~~~~~ 212 (272)
T TIGR00064 207 LEQAKV 212 (272)
T ss_pred HHHHHH
Confidence 443333
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.19 Score=42.36 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=26.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
|.-+.|.+|+|+|||...+..+.+.... +.+++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 4558999999999998876655554332 3467777764
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.26 Score=47.03 Aligned_cols=131 Identities=18% Similarity=0.070 Sum_probs=63.9
Q ss_pred CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 60 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
+++-++---+.+.-+..|.-++|.|.||.|||..++-.+...... . +..+++... ..-..|+..++-.... ++..
T Consensus 200 i~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~-~-~~~v~~fSl-EMs~~ql~~Rlla~~s--~v~~ 274 (464)
T PRK08840 200 VDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD-Q-DKPVLIFSL-EMPAEQLMMRMLASLS--RVDQ 274 (464)
T ss_pred cCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh-C-CCeEEEEec-cCCHHHHHHHHHHhhC--CCCH
Confidence 333333333444444455668999999999997765444433222 1 335666643 3446666655543222 2222
Q ss_pred EEE-ECCcchHHHHHH------HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 140 HAC-VGGTSVREDQRI------LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 140 ~~~-~~~~~~~~~~~~------~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
..+ .|..+...+.+. +....++.|- |...+....++.......+++||||=.|.+.
T Consensus 275 ~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 275 TKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 111 122222222221 1123355553 3444443332221112247899999988774
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.16 Score=48.77 Aligned_cols=18 Identities=28% Similarity=0.267 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999765
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.043 Score=47.37 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=36.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.|..++|.||+|+|||..++..+.+.+.. +.++++++- .+-..+..+.+.+++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 35669999999999998776666655433 347788874 455666666666653
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.03 Score=48.25 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.7
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
++|.|++|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999754
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.12 Score=51.65 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=66.3
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.++++.+|++..|.+.++.+++ .++.+..++|+++..++...++...+|+.+|+|+|. .+...+++.++..||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999999988877765 378999999999999999999999999999999997 555667788888887
Q ss_pred EcCC
Q 015093 353 NYDL 356 (413)
Q Consensus 353 ~~~~ 356 (413)
+-..
T Consensus 363 IDEa 366 (630)
T TIGR00643 363 IDEQ 366 (630)
T ss_pred Eech
Confidence 6443
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.35 Score=46.36 Aligned_cols=116 Identities=21% Similarity=0.152 Sum_probs=60.3
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVREDQ 152 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 152 (413)
+..|.-++|.|.||.|||..++-.+...+.. +.++++++. ..-..|+..++-.... ++....+ .+..+...+.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHH
Confidence 3345568999999999998776665554322 336666654 3456666665544322 2222111 1222222221
Q ss_pred HHH-----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 153 RIL-----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 153 ~~~-----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
... .....+.|- |++.+...+++.......+++||||=.+.+.
T Consensus 263 ~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 111 112345542 4555554443321112247899999998764
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.075 Score=52.83 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... ....+.+.+...|....+|+.+
T Consensus 117 g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEEEc
Confidence 34689999999987432 3445555566655555445444
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.43 Score=42.13 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=32.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
...+++|+|+||.+.. .....+.+++..-|.+..++++|..+..
T Consensus 94 ~~~kv~ii~~ad~mt~-~AaNaLLK~LEEPp~~~~fiL~~~~~~~ 137 (290)
T PRK05917 94 SPYKIYIIHEADRMTL-DAISAFLKVLEDPPQHGVIILTSAKPQR 137 (290)
T ss_pred CCceEEEEechhhcCH-HHHHHHHHHhhcCCCCeEEEEEeCChhh
Confidence 3478999999998743 3567788888887777777777766543
|
|
| >PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.18 Score=48.12 Aligned_cols=118 Identities=14% Similarity=0.065 Sum_probs=58.3
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVRED 151 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 151 (413)
-+..|.-++|.|.||+|||..++-.+...... .+..+++.+ ...-..|+..++-.... ++....+ .|......+
T Consensus 209 G~~~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fS-lEM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~ 283 (460)
T PRK07004 209 GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFS-MEMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDW 283 (460)
T ss_pred CCCCCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEe-CCCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHH
Confidence 34445668999999999997765444433222 133566554 34445665555432211 2222211 222222222
Q ss_pred HHHH-----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 152 QRIL-----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 152 ~~~~-----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.+.. .....+.|. |+..+....++.......+++||+|=.+.+.
T Consensus 284 ~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 284 PKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 2111 123456653 4444444333211112237899999988774
|
|
| >PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.44 Score=45.56 Aligned_cols=147 Identities=18% Similarity=0.067 Sum_probs=72.5
Q ss_pred hhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE-CCcchHH
Q 015093 72 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV-GGTSVRE 150 (413)
Q Consensus 72 ~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 150 (413)
.-+..|.-++|.|.||.|||..++-.+...... .+.++++... ..-..|+..++-.... ++....+. +..+...
T Consensus 219 ~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSl-EM~~~ql~~Rlla~~~--~v~~~~i~~~~l~~~e 293 (471)
T PRK08006 219 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSL-EMPGEQIMMRMLASLS--RVDQTRIRTGQLDDED 293 (471)
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEec-cCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHH
Confidence 334445568999999999997766554443322 1335666643 3446666655543322 22222222 2222222
Q ss_pred HHHH------HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhhcc----CcHHHHHHHHhhCC----
Q 015093 151 DQRI------LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR----GFKDQIYDIFQHLP---- 211 (413)
Q Consensus 151 ~~~~------~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~----~~~~~~~~~~~~~~---- 211 (413)
+.+. +....++.|- |+..+....++.......+++||||=.|.+... +....+..+.+.+.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAk 373 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAK 373 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 2221 1123455553 455554444321111124789999999876422 12222333322221
Q ss_pred -CCceEEEEeeeC
Q 015093 212 -GKIQVGVFSATM 223 (413)
Q Consensus 212 -~~~~~i~lSAT~ 223 (413)
-++.++++|-.-
T Consensus 374 el~ipVi~LsQLn 386 (471)
T PRK08006 374 ELQVPVVALSQLN 386 (471)
T ss_pred HhCCeEEEEEecC
Confidence 156677777443
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.042 Score=49.92 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=29.5
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
+..+++++|+||||||||... .+++..+.. ..+++.+=.+.++
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~---~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPP---QERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCC---CCCEEEECCCccc
Confidence 345788999999999999654 455554433 2367776676655
|
|
| >PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.52 Score=43.69 Aligned_cols=144 Identities=15% Similarity=0.072 Sum_probs=62.7
Q ss_pred EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH-HHHH---HHHHHHHhhcccCceEEEE--ECCcchHHHHHH
Q 015093 81 IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE-LAQQ---IEKVMRALGDYMGVKVHAC--VGGTSVREDQRI 154 (413)
Q Consensus 81 lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~-l~~q---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 154 (413)
++.++.|+|||......++...........++++ |+.. +... ....+...... ....... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------ 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII------ 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE------
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE------
Confidence 5788999999988776666555444433355555 5554 4443 22233333333 1222222 111110
Q ss_pred HhcCCcEEEeChHHH--HHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC--hhHHHH
Q 015093 155 LSAGVHVVVGTPGRV--FDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP--PEALEI 230 (413)
Q Consensus 155 ~~~~~~Iii~T~~~l--~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~--~~~~~~ 230 (413)
+.++..|.+.+.+.= ...+.- ..++++++||+-...+..+...+......... ...+..|.|+. ......
T Consensus 73 ~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~~~~~ 146 (384)
T PF03237_consen 73 LPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGWFYEI 146 (384)
T ss_dssp ETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHH
T ss_pred ecCceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCceeee
Confidence 023445666653321 111211 33689999998876555445444444444432 22224555443 344555
Q ss_pred HHHhcCCC
Q 015093 231 TRKFMNKP 238 (413)
Q Consensus 231 ~~~~~~~~ 238 (413)
........
T Consensus 147 ~~~~~~~~ 154 (384)
T PF03237_consen 147 FQRNLDDD 154 (384)
T ss_dssp HHHHHCTS
T ss_pred eehhhcCC
Confidence 55555444
|
The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.04 Score=45.12 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=26.7
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
+.+++++++.||+|+|||..+...+.+.+. .+..++++. ...|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~-~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT-ASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE-HHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee-cCceecc
Confidence 445778999999999999877544444333 233566554 4455544
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PHA00012 I assembly protein | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.7 Score=41.15 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccc
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYE 105 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~ 105 (413)
-+|.|.+|+|||+.+..-+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998877777665543
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.25 Score=47.02 Aligned_cols=143 Identities=17% Similarity=0.077 Sum_probs=70.3
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVREDQ 152 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 152 (413)
+..|.-++|.|+||+|||..++-.+...... .+..+++++.- .-..|..+++..... ++....+ .|......+.
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--~g~~vl~~SlE-m~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIK--EGKPVAFFSLE-MSAEQLAMRMLSSES--RVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--CCCeEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHhccCCCCHHHHH
Confidence 3445568999999999998776555543322 13367776543 345555555544322 2221111 1222222111
Q ss_pred H------HHhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhhccC----cHHHHHHHHhhCC-----C
Q 015093 153 R------ILSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG----FKDQIYDIFQHLP-----G 212 (413)
Q Consensus 153 ~------~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~----~~~~~~~~~~~~~-----~ 212 (413)
+ .+. ...+.|. |.+.+...++..... ..+++||||=.+.+.... ....+..+.+.+. .
T Consensus 267 ~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~ 344 (434)
T TIGR00665 267 KLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL 344 (434)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1 112 2345542 445555444322111 236899999888764221 2222333333222 2
Q ss_pred CceEEEEeeeC
Q 015093 213 KIQVGVFSATM 223 (413)
Q Consensus 213 ~~~~i~lSAT~ 223 (413)
++.++++|-..
T Consensus 345 ~i~vi~lsqln 355 (434)
T TIGR00665 345 NVPVIALSQLS 355 (434)
T ss_pred CCeEEEEeccC
Confidence 56677777554
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.081 Score=56.77 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=63.2
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE--------EEEECC-c-
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV--------HACVGG-T- 146 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~--------~~~~~~-~- 146 (413)
.++++|.|+.|||||.+...-++..+..+....++++++-|+.-+.++.+++........... ..+.+. .
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~~~~~~l~~~l~~~~~~~~~ 89 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLGEWAVLDDAELRARLEALEGKRPD 89 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Confidence 567999999999999888777776665544445899999999999988887765543211000 000000 0
Q ss_pred --ch----HHHHHHHhcCCcEEEeChHHHHHHHHc
Q 015093 147 --SV----REDQRILSAGVHVVVGTPGRVFDMLRR 175 (413)
Q Consensus 147 --~~----~~~~~~~~~~~~Iii~T~~~l~~~~~~ 175 (413)
.. ......+.....+-|.|.++|...+.+
T Consensus 90 ~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~r 124 (1141)
T TIGR02784 90 AAKLAEARRLFARALETPGGLKIQTIHAFCESLLH 124 (1141)
T ss_pred hHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHHH
Confidence 00 011223344557889999999876643
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.082 Score=48.40 Aligned_cols=42 Identities=12% Similarity=0.292 Sum_probs=26.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
++.++|+||||||||... ..++..+.... +.+++.+-...+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~-~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNA-AGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCC-CCEEEEEcCChhh
Confidence 566999999999999765 44454443322 3366666554443
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.61 Score=43.87 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.0
Q ss_pred EEEeCCCCCchhHHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~ 100 (413)
+++++++|+|||.++.-.+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 788999999999887555544
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.051 Score=46.58 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=35.0
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.|..++|.|++|+|||..++..+.+.+.+. +.++++++-. +-..+..+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEec-CCHHHHHHHHHHc
Confidence 356699999999999988776666665541 2377777743 3356666666655
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.17 Score=40.87 Aligned_cols=49 Identities=24% Similarity=0.431 Sum_probs=34.7
Q ss_pred CCccEEEEccchhhhccCc--HHHHHHHHhhCCCCceEEEEeeeCChhHHH
Q 015093 181 DYIRMFVLDEADEMLSRGF--KDQIYDIFQHLPGKIQVGVFSATMPPEALE 229 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (413)
..+++||+||+-...+.++ ...+..++...|....+|+..-.+++.+.+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e 146 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLE 146 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 4479999999998766553 356777888888888777655555554443
|
Alternate name: corrinoid adenosyltransferase. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.2 Score=36.15 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=15.5
Q ss_pred EEEeCCCCCchhHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~ 99 (413)
+++.+++|+|||......+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999987644443
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.31 Score=46.56 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=70.3
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVREDQ 152 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 152 (413)
+..|.-++|.|+||+|||..++-.+...... .+.++++++. ..-..|+..++-.... ++....+ .|......+.
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSl-Ems~~~l~~R~l~~~~--~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSL-EMGAESLVMRMLCAEG--NIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeC-CCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHHH
Confidence 3445568999999999998776555443322 1335666653 3445565555532211 2221111 1222222221
Q ss_pred HH-----HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-----CcHHHHHHHHhhCC-----C
Q 015093 153 RI-----LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-----GFKDQIYDIFQHLP-----G 212 (413)
Q Consensus 153 ~~-----~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-----~~~~~~~~~~~~~~-----~ 212 (413)
.. ...+.++.|. |++.+...+++......++++||||=.|.+... .....+..+.+.+. -
T Consensus 275 ~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~ 354 (448)
T PRK05748 275 KLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL 354 (448)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 11 1122345553 445555444332111124789999999977421 11222333322221 2
Q ss_pred CceEEEEeeeC
Q 015093 213 KIQVGVFSATM 223 (413)
Q Consensus 213 ~~~~i~lSAT~ 223 (413)
++.++++|-..
T Consensus 355 ~i~vi~lsQln 365 (448)
T PRK05748 355 KVPVIALSQLS 365 (448)
T ss_pred CCeEEEecccC
Confidence 56677777654
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.65 Score=42.72 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=24.9
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhC-CCCceEEEEeeeCChh
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHL-PGKIQVGVFSATMPPE 226 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~ 226 (413)
..++.+||+|- .+..-.-.+.+++..+ ..+.-+|+.|-+++.+
T Consensus 128 ~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 128 SRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred CCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 46999999994 3332222233344333 3466677777777643
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.12 Score=47.63 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=22.1
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYE 105 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~ 105 (413)
+-+|+.++|.+|+|+|||... ..+...+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhhccc
Confidence 445788999999999999754 3455544443
|
Members of this family differ in the specificity of RNA binding. |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.19 Score=50.14 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=72.7
Q ss_pred EEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 256 FHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+.........|.+.+.+++.+. .++.+||.+|.+.....+.+.|+.. |.++..+|+++++.+|.+......+|+.+|
T Consensus 220 ~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~v 299 (730)
T COG1198 220 FLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARV 299 (730)
T ss_pred eeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceE
Confidence 3344444456667777666554 4568999999999998888888765 678999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEE
Q 015093 333 LITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~ 353 (413)
+|.|..+- =.-++++-.+|.
T Consensus 300 VIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 300 VIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred EEEechhh-cCchhhccEEEE
Confidence 99996321 123345555553
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.023 Score=46.43 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=27.8
Q ss_pred HHhcCCcEEEeChHHHHHHHHcCC---CCCCCccEEEEccchhhhc
Q 015093 154 ILSAGVHVVVGTPGRVFDMLRRQS---LRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 154 ~~~~~~~Iii~T~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~ 196 (413)
.....++|+|+++..|++-..... .... -.+||+||||++.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHH
Confidence 334568999999999976443222 2233 37899999999854
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.23 Score=49.45 Aligned_cols=91 Identities=21% Similarity=0.175 Sum_probs=70.0
Q ss_pred ccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCC--CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCcc
Q 015093 264 EWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRD--HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLL 339 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~ 339 (413)
..|...+.++++.. .++.+||.+|.+..+..+.+.|++.. ..+..+|+++++.+|.+......+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 35666666655443 45679999999999999999998753 568999999999999999999999999999999742
Q ss_pred ccCCCCCCCCEEEEcC
Q 015093 340 ARGIDVQQVSLVINYD 355 (413)
Q Consensus 340 ~~G~d~~~~~~vi~~~ 355 (413)
- =.-++++..||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 2 12445566666544
|
|
| >PHA03372 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.55 Score=45.37 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=76.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH----HhhcccCceEEEEECCcchHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR----ALGDYMGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
+-.+...|---|||+.. .++...+...-.+-++.|+...+..++-..+++. +|..... +....+
T Consensus 203 kaTVFLVPRRHGKTWf~-VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~--vi~~k~--------- 270 (668)
T PHA03372 203 KATVFLVPRRHGKTWFI-IPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKH--TIENKD--------- 270 (668)
T ss_pred cceEEEecccCCceehH-HHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccc--eeeecC---------
Confidence 34677889999999874 5565555555557799999999887776666654 3332111 111111
Q ss_pred HHhcCCcEEEeChHH-----HHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCC
Q 015093 154 ILSAGVHVVVGTPGR-----VFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMP 224 (413)
Q Consensus 154 ~~~~~~~Iii~T~~~-----l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~ 224 (413)
.-|.+.-|+. +..........-+++.++++||||-+ ....+..++-.+. +++++|.+|.|-+
T Consensus 271 -----~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 271 -----NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred -----cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCCCC
Confidence 1233332211 12223345566677899999999965 3344445554443 4788999998853
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.17 Score=50.11 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=25.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++||||+|.+... ....+.+.+...+....+|+.|
T Consensus 120 ~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred CCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 34689999999987432 3556667777766555555433
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.37 Score=45.90 Aligned_cols=39 Identities=8% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... ....+.+.+...+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEEEe
Confidence 34689999999987432 2344555666655555555443
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.064 Score=52.33 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeee
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (413)
.+..++|+|||-..++......+++.+....++ +.+++=|-
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEeh
Confidence 346799999999988887788888888877766 34444443
|
|
| >PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2 | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.79 Score=37.03 Aligned_cols=138 Identities=15% Similarity=0.231 Sum_probs=60.7
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
+.|.-..|-|||.+++-.++..+-. +.+++++-=.+.-. ..-+...+....++.......+......... .
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg~~--~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~----~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKGGR--YSGELKALKKLPNVEIERFGKGFVWRMNEEE----E 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS--SS----HHHHHHGGGT--EEEE--TT----GGGHH----H
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecCCC--CcCHHHHHHhCCeEEEEEcCCcccccCCCcH----H
Confidence 6677788999999987777666544 44787776555411 1122222221112332221111100000000 0
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc--HHHHHHHHhhCCCCceEEEEeeeCChhHHH
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF--KDQIYDIFQHLPGKIQVGVFSATMPPEALE 229 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~--~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (413)
+ ........+.... ......+++||+||+-...+.++ ...+..++...|...-+|+..-.+++.+.+
T Consensus 77 ~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e 145 (172)
T PF02572_consen 77 D--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIE 145 (172)
T ss_dssp H--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHH
T ss_pred H--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHH
Confidence 1 0011111111111 12234589999999998776553 356777888888777777555455544443
|
5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A. |
| >KOG1807 consensus Helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.06 Score=52.57 Aligned_cols=68 Identities=19% Similarity=-0.019 Sum_probs=53.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEcccHHHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
.+-.-|..|....++.+-.|+++|+|+|||++.+.++-..+.+. ....+++++|=|...+.|....+-
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 45567999999998999999999999999999877665555443 123479999999988888766554
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.089 Score=49.93 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=24.3
Q ss_pred HHHHhhhhhhhC--CCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 65 AIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 65 ~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
+.|.+.+..+.. ++-++|.||||||||.+. .+++..+.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 334444444433 345899999999999764 45555543
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.36 Score=46.39 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=21.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
....++|+||+|.+... ....+.+.+...+...-++
T Consensus 118 ~~~KVvIIDEad~Lt~~-a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKE-AFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred CCeeEEEEEChhhcCHH-HHHHHHHHHhcCCCCeEEE
Confidence 34689999999987432 2344455555544444333
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.055 Score=49.07 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=27.7
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
..+++++|+|+||||||... .+++..+... .+++.+=.+.++
T Consensus 158 ~~~~nili~G~tgSGKTTll-~aL~~~ip~~---~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFT-NAALREIPAI---ERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHH-HHHHhhCCCC---CeEEEecCCCcc
Confidence 35788999999999999654 4555555332 366665444443
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.22 Score=51.48 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=65.7
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe-CccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT-DLLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~~~vi 352 (413)
.++.+.|.+||.=.|++-++-|+++ .+++..++.-.+.+++.++++..++|+++|+|.| ..+..++-+.++-.+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4457899999998888877777765 5678888888899999999999999999999999 6889999999988887
Q ss_pred E
Q 015093 353 N 353 (413)
Q Consensus 353 ~ 353 (413)
+
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 5
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.16 Score=46.49 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=29.9
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
-+|+..+|.+|.|+|||..+ ..+...+..+... ..+|++-..+......+..+.
T Consensus 167 GkGQR~lIvgppGvGKTTLa-K~Ian~I~~nhFD-v~~~VvLIgER~~EVtdiqrs 220 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL-QNIANSITTNHPE-VHLIVLLIDERPEEVTDMQRS 220 (416)
T ss_pred ccCceEEEeCCCCCChhHHH-HHHHHHHHhhcCC-eEEEEEEeCCchhHHHHHHHH
Confidence 34788999999999999654 3455544443323 233333344433333333333
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.26 Score=51.09 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..|.+.++.+++. +..+..+++..+..++.++++.+.+|+.+|+|+|. .+...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4468999999999999998887753 56788899999999999999999999999999996 555667788888887
Q ss_pred EcC
Q 015093 353 NYD 355 (413)
Q Consensus 353 ~~~ 355 (413)
+-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 644
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.37 Score=44.51 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=17.9
Q ss_pred EEEeCCCCCchhHHHHH-HHHHhccc
Q 015093 80 VIQQAQSGTGKTATFCS-GILQQLDY 104 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~-~i~~~l~~ 104 (413)
.++.|.+|||||+.++. .++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 47899999999988764 34444433
|
|
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.38 Score=46.46 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=59.7
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccc------------cCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYE------------SLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC- 142 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~------------~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~- 142 (413)
.|.-++|.|+||+|||..++-.+.+..... ..+.+++|++ ...-..|+..++-.... ++....+
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s--~v~~~~i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQS--EISSSKIR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhc--CCCHHHHh
Confidence 345589999999999987765554443221 1134666664 34456666666544322 2222112
Q ss_pred ECCcchHHHHHHHh-----cCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 143 VGGTSVREDQRILS-----AGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 143 ~~~~~~~~~~~~~~-----~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.|......+.+... ...++.|- |++.+...+++.... ..+++||||=.|.+.
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~-~~~~lvvIDyLqli~ 354 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQ-HGLDLLVVDYLQLIR 354 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcc
Confidence 22222222221111 12345553 455555444332111 237899999999764
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.13 Score=52.63 Aligned_cols=55 Identities=22% Similarity=0.141 Sum_probs=36.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCC-CcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEK-PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~-~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
...|++.|.-+.++..|+.+-... +||-+-+- -.+...+.++.++|+|+|||+.+
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~-~~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDN-FNITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhh-cccCCCcceeecCCCCCchhHHH
Confidence 467777887778888887764432 22222221 13445678999999999999875
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.32 Score=47.38 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=70.4
Q ss_pred HHHHHHHHHhc-CCCcEEEEEcCcccH----HHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccc
Q 015093 267 LDTLCDLYETL-AITQSVIFVNTRRKV----DWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLA 340 (413)
Q Consensus 267 ~~~l~~~~~~~-~~~~~lIf~~~~~~a----~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~ 340 (413)
+-++..++... .+..+.+-+||.=-| ..+.+.|...|+.+.++.|.+....|+++++...+|..+++|.|- .+.
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 33444444333 455788899986544 455556666789999999999999999999999999999999996 677
Q ss_pred cCCCCCCCCEEEEcCC
Q 015093 341 RGIDVQQVSLVINYDL 356 (413)
Q Consensus 341 ~G~d~~~~~~vi~~~~ 356 (413)
+.+++.++-.||.-..
T Consensus 378 d~V~F~~LgLVIiDEQ 393 (677)
T COG1200 378 DKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cceeecceeEEEEecc
Confidence 8999999988886544
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.6 Score=47.37 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
..+.++.||+|+|||..+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999997753
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.13 Score=42.43 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=26.5
Q ss_pred CcHHHHhhhhhhh-CCCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 63 PSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 63 ~~~~Q~~~~~~~~-~~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
+.+-|.+.+.... .++.+++.+|||||||... ..++..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 4555666665544 4677999999999999754 3444444
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.35 Score=48.02 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999775
|
|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.12 Score=45.46 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=38.3
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.|+.++|.+++|+|||..++..+.+.+.. +.++++++- .+...+..+.+.++.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~-~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVST-EESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 46779999999999998877666665544 447788775 455666667676654
|
|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.11 Score=51.06 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=24.6
Q ss_pred HHHHhhhhhhhC--CCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 65 AIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 65 ~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
+-|.+.+..+.. +.-++++||||||||.+. ..++..+.
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 344444444433 344889999999999774 55555553
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.19 Score=43.52 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=22.0
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhccc
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~ 104 (413)
.+..|+.++|.+|.|+|||... -.+...+..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l~~ 42 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLL-QSIANAITK 42 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHH-HHHHhcccc
Confidence 3456888999999999999643 444444433
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.48 Score=45.45 Aligned_cols=116 Identities=14% Similarity=0.061 Sum_probs=58.4
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
..|.-++|.|.||.|||..++-.+....... +.++++.+. ..-..|+..++.......+... ...|......+.+.
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~~ 302 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSM-EMSASQLAMRLISSNGRINAQR-LRTGALEDEDWARV 302 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEec-cCCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHHH
Confidence 3345589999999999987765554433221 335666654 3445666666654432222111 11122222222111
Q ss_pred -----HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 155 -----LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 155 -----~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
......+.|. |++.+...++.... ...+++||||=.+.+.
T Consensus 303 ~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 303 TGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 0112345543 44555444432211 1237899999888764
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.34 Score=44.95 Aligned_cols=55 Identities=24% Similarity=0.224 Sum_probs=35.6
Q ss_pred ccCCCCCHHHHHHHHhCCCCC--CcHHH-H----hhhhhhhCCCcEEEeCCCCCchhHHHHH
Q 015093 42 FDSMGLKENLLRGIYAYGFEK--PSAIQ-Q----RGIVPFCKGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 42 ~~~~~l~~~~~~~l~~~~~~~--~~~~Q-~----~~~~~~~~~~~~lv~~~tGsGKT~~~~~ 96 (413)
=..+...+|+.-.+...|+.. +..-| . ..++.+..+.|++..||+|+|||-.+..
T Consensus 167 R~~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 167 RKEFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HhhcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 344556677777778787752 22211 1 1124455678999999999999976643
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.32 Score=49.70 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.2
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 4577999999999999664
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=2 Score=38.83 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=29.0
Q ss_pred CCccEEEEccchhhhccC-cHHHHHHHHhh------CCCCceEEEEeeeCChhHHHHHHHh
Q 015093 181 DYIRMFVLDEADEMLSRG-FKDQIYDIFQH------LPGKIQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~------~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (413)
.++++||+|=+-+..... .-..+.++.+. ..+...++.++||...+.......+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 346899999887654222 22333333322 1223357889999765443333333
|
|
| >PRK06321 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.82 Score=43.75 Aligned_cols=115 Identities=17% Similarity=0.076 Sum_probs=58.2
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE-ECCcchHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC-VGGTSVREDQR 153 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (413)
..|.-++|.|.||.|||..++-.+...... . +..+++.+. ..-..|+..++-.... ++....+ .+......+.+
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~-~-g~~v~~fSL-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~~ 298 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQ-N-RLPVGIFSL-EMTVDQLIHRIICSRS--EVESKKISVGDLSGRDFQR 298 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHh-c-CCeEEEEec-cCCHHHHHHHHHHhhc--CCCHHHhhcCCCCHHHHHH
Confidence 334558899999999998765533332212 1 335666543 3445666555543221 2222222 22222222221
Q ss_pred HH-----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 154 IL-----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 154 ~~-----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.. .....+.|- |.+.+....+..... ..+++||||=.+.+.
T Consensus 299 ~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~-~~~~lvvIDyLql~~ 349 (472)
T PRK06321 299 IVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKES-YDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHHcC
Confidence 11 123356664 445554444332211 237899999998764
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.29 Score=43.93 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=33.3
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhh----hhhhCCCcEEEeCCCCCchhHHHH
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGI----VPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~----~~~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
.++..+|.+.+==+.+.+.+.+.-+ .|.|..-+ ..+..-+.+++.+|+|+|||..+-
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~Vi---lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVI---LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHh---hcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 3445667776655566666655422 22222111 222234679999999999998763
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.13 Score=44.73 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=35.0
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
.|..++|.+++|+|||..++..+.+.+.+ +.++++++ +.+-..+..+.+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 35669999999999998776656555433 33667776 3344555666666553
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.078 Score=46.85 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=29.5
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
..++++++.|+||||||... .+++..+... ..+++++=...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 44678999999999999765 5555555444 2377777666554
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.13 Score=46.52 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=26.6
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
+.++++.||||+|||..+.. +...+... +..++++. ...+..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~~--g~~V~y~t-~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLDR--GKSVIYRT-ADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHHC--CCeEEEEE-HHHHHHH
Confidence 46799999999999976543 33333322 33565554 3455443
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.13 Score=46.41 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999765
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.15 Score=44.70 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=30.2
Q ss_pred cHHHHhhhhhhhC--CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 64 SAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 64 ~~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+.|.+.+..+.. +..++|.++||||||... ..++..+.. ...+++.+=...+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~--~~~~iitiEdp~E 119 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT--PEKNIITVEDPVE 119 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC--CCCeEEEECCCce
Confidence 3445555554443 345899999999999765 444444432 1224555543333
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.16 Score=50.25 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=22.1
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~ 213 (413)
-.++|+|||..-.+......+.+.+....++
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~~~ 514 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLLKG 514 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHhcC
Confidence 4689999999877776666666666654444
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.23 Score=45.23 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=71.2
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
...++.+.-|++.+.+.+...-+.+-+---.+ .--++++..+|+|+|||+.+
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~-----apfRNilfyGPPGTGKTm~A----------------------- 401 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQ-----APFRNILFYGPPGTGKTMFA----------------------- 401 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccccc-----chhhheeeeCCCCCCchHHH-----------------------
Confidence 34556666677777666653211000000000 00267999999999999765
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+ ...|+....++||..-..-. =-|+-.+.++++-....- ==++.|||++-++..
T Consensus 402 relA-----------r~SGlDYA~mTGGDVAPlG~--------qaVTkiH~lFDWakkS~r----GLllFIDEADAFLce 458 (630)
T KOG0742|consen 402 RELA-----------RHSGLDYAIMTGGDVAPLGA--------QAVTKIHKLFDWAKKSRR----GLLLFIDEADAFLCE 458 (630)
T ss_pred HHHH-----------hhcCCceehhcCCCccccch--------HHHHHHHHHHHHHhhccc----ceEEEehhhHHHHHH
Confidence 1111 12355666666654321111 113334445544433211 126889999987642
Q ss_pred C--------cHHHHHHHHhhCC-CCceEEEEeeeCChhH
Q 015093 198 G--------FKDQIYDIFQHLP-GKIQVGVFSATMPPEA 227 (413)
Q Consensus 198 ~--------~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~ 227 (413)
. -...++.++-+.. ....++++=||-.+..
T Consensus 459 RnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd 497 (630)
T KOG0742|consen 459 RNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 497 (630)
T ss_pred hchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc
Confidence 2 2244444443333 3556888888876543
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.071 Score=43.13 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=16.7
Q ss_pred CccEEEEccchhhh--ccCcHHHHHHHHh
Q 015093 182 YIRMFVLDEADEML--SRGFKDQIYDIFQ 208 (413)
Q Consensus 182 ~~~~iIiDE~h~~~--~~~~~~~~~~~~~ 208 (413)
..+++|+||+-.+- ...|...+.+++.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 35799999999764 4456777777766
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.11 Score=43.40 Aligned_cols=38 Identities=18% Similarity=0.418 Sum_probs=23.6
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
++|+||||||||... ..++..+.... +.+++.+-...+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcCCcc
Confidence 789999999999775 44444443332 235555554433
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.5 Score=48.17 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.6
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
.+.++.||+|+|||..+-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 569999999999997753
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.22 Score=43.64 Aligned_cols=38 Identities=16% Similarity=-0.020 Sum_probs=27.2
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
.|.-.+|.|++|+|||..++..+.+.+.. +.++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 35568999999999998776655554432 347777773
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.28 Score=41.91 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=27.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEcccH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPTR 118 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~~ 118 (413)
|+-+.|.+|+|+|||..++..+....... ....+++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 55689999999999987766555443332 0124677777643
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.46 Score=50.57 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=63.4
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..|.++++.+++. ++.+..+++..+..++.++++.+.+|..+|+|+|. .+...+++.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4568999999999999998888753 45777899999999999999999999999999996 455556677787777
Q ss_pred Ec
Q 015093 353 NY 354 (413)
Q Consensus 353 ~~ 354 (413)
+-
T Consensus 728 ID 729 (1147)
T PRK10689 728 VD 729 (1147)
T ss_pred Ee
Confidence 53
|
|
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.52 Score=45.49 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE-CCcchHHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV-GGTSVREDQRIL 155 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 155 (413)
|.-++|.|.||.|||..++-.+....... +..+++.+ ...-..|+..++-.... ++....+. |..+...+.+..
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fS-lEMs~~ql~~R~ls~~s--~v~~~~i~~g~l~~~e~~~~~ 339 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKH--NKASVIFS-LEMSKSEIVMRLLSAEA--EVRLSDMRGGKMDEDAWEKLV 339 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEE-eeCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHHHH
Confidence 44578999999999977654443332221 33566653 33334555444433221 22211122 222222222111
Q ss_pred -----hcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 156 -----SAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 156 -----~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.....+.|- |.+.+....++.... ..+++||||=.|.+.
T Consensus 340 ~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~-~~~~lvvIDYLql~~ 388 (505)
T PRK05636 340 QRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQK-HDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 123455553 334444333321111 237899999999774
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.065 Score=46.98 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=33.0
Q ss_pred cCccCCCCCHHHHHHHHhCCCC----------CCcHHHHhhhhh-----h-hCCCcEEEeCCCCCchhHHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFE----------KPSAIQQRGIVP-----F-CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~----------~~~~~Q~~~~~~-----~-~~~~~~lv~~~tGsGKT~~~ 94 (413)
.....++.+.++...|..+=+. ..|.+-.+.-.. + +...++++.+|||||||+.+
T Consensus 44 ~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 44 KELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred hhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHH
Confidence 4555677888888888765332 122222222111 0 12346999999999999765
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.1 Score=46.83 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
+.+++|.|+||+|||......+...+.. +..++++=|..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~---g~~~~i~D~~g~ 40 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRR---GPRVVIFDPKGD 40 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHc---CCCEEEEcCCch
Confidence 4679999999999998776444443333 236677755433
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.14 Score=48.90 Aligned_cols=40 Identities=8% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 180 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++.|+||+|.+... ....+.+.+..-|....+++.|
T Consensus 117 ~~ryKVyiIDEvHMLS~~-afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQ-AFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHH-HHHHHhcccccCccCeEEEEec
Confidence 344799999999976433 3344444455555554444433
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.88 Score=43.37 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=33.3
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.+++|+|||...+..+...... +.+++|+..- +-..|......++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECc-CCHHHHHHHHHHc
Confidence 4458999999999998776554443222 2378888764 4455665555554
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.16 Score=52.65 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEE-EEeCccccCCCCCCCCEEEEcCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL-ITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl-i~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
...++|+|..-......+...+...++....-.++- +-...+..|++ ++++ +-++..+.|+|+-...+|++.++
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 446889998877767777777766665544333322 23444555655 5544 66788899999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCc
Q 015093 357 PTQPENYLHRIGRSGRFGRK 376 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~ 376 (413)
..++..-.|.+||+.|.|+.
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred ccCchHHHhhhhhhhhcccc
Confidence 99999999999999999975
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.3 Score=42.70 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=44.5
Q ss_pred ccEEEEccchhhhc-------cCcHHHHHHHHhhC---CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCC
Q 015093 183 IRMFVLDEADEMLS-------RGFKDQIYDIFQHL---PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEG 252 (413)
Q Consensus 183 ~~~iIiDE~h~~~~-------~~~~~~~~~~~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (413)
..+|.+||++.+.- +.....++.++..+ .....+..+.||-.++.-+-.- .++-.
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi---------------LRPGR 669 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI---------------LRPGR 669 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhh---------------cCCCc
Confidence 57899999997652 11223344444333 3456788889997765432111 11111
Q ss_pred c-eEEEEEeCccccHHHHHHHHHHh
Q 015093 253 I-KQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 253 ~-~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
+ ...++.++...++...|..+.+.
T Consensus 670 lDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 670 LDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred cCceeeecCCCHHHHHHHHHHHhcc
Confidence 2 23445556666777777766664
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.33 Score=49.52 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999775
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.54 Score=43.61 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.0
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
..++.||+|+|||..+..
T Consensus 41 ~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARI 58 (367)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999977643
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.43 Score=41.26 Aligned_cols=44 Identities=2% Similarity=0.093 Sum_probs=30.4
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
...+++|+|++|.+... ....+.+++..-|.+.-++++|..+..
T Consensus 87 ~~~KV~II~~ae~m~~~-AaNaLLK~LEEPp~~t~fiLit~~~~~ 130 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQ-SANSLLKLIEEPPKNTYGIFTTRNENN 130 (261)
T ss_pred CCCEEEEeccHhhhCHH-HHHHHHHhhcCCCCCeEEEEEECChHh
Confidence 35799999999987433 456666777776666666666665543
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.17 Score=48.61 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=25.1
Q ss_pred cHHHHhhhhhhhCC-C-cEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 64 SAIQQRGIVPFCKG-L-DVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~-~-~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
.+-|.+.+..+... + -+++.||||||||.+. ..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 34455555554443 3 3789999999999764 44555554
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.16 Score=54.30 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccc--cCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYE--SLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~--~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.+++++|.|..|||||.+....++..+... -.-..+|++|-|++-+.++..++...
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 467899999999999999877777777664 23458999999999998888887654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.28 Score=48.12 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=24.1
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEE
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
.+++|+||+-.-.+......+.+.+....++.-++.+
T Consensus 489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 489 APILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5689999998777766666666666655444444443
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.22 Score=42.75 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=32.1
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.|..+++.+++|+|||..+...+.+.+.+ +..+++++. .....+..+..+++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45679999999999998765545444432 336667664 33344444444443
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.71 Score=42.88 Aligned_cols=78 Identities=21% Similarity=0.170 Sum_probs=42.2
Q ss_pred ccEEEEccchhhhccC--------cHHHHHHHHh----hCCCCceEEEEeeeCChhHHH-HHHHhcCCCEEEEecCCccc
Q 015093 183 IRMFVLDEADEMLSRG--------FKDQIYDIFQ----HLPGKIQVGVFSATMPPEALE-ITRKFMNKPVRILVKRDELT 249 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~--------~~~~~~~~~~----~~~~~~~~i~lSAT~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 249 (413)
.+++++||+|.+...- .......++. ....+-+++.++||-.++..+ .+++.+.
T Consensus 246 PsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~------------- 312 (428)
T KOG0740|consen 246 PSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFV------------- 312 (428)
T ss_pred CeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhh-------------
Confidence 5788899999876321 1111222221 222345889999997654333 3333222
Q ss_pred cCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 250 LEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
...+...+..+.....+..++++.
T Consensus 313 ----kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 313 ----KRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred ----ceeeecCCCHHHHHHHHHHHHHhC
Confidence 223333444456667777777776
|
|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.21 Score=42.78 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
..-++++++|||||+.+. .++...-.+...+ .++-+-.-++.
T Consensus 127 RGLviiVGaTGSGKSTtm-AaMi~yRN~~s~g-HIiTIEDPIEf 168 (375)
T COG5008 127 RGLVIIVGATGSGKSTTM-AAMIGYRNKNSTG-HIITIEDPIEF 168 (375)
T ss_pred CceEEEECCCCCCchhhH-HHHhcccccCCCC-ceEEecChHHH
Confidence 344899999999999764 3444433333333 55555444443
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.53 Score=45.60 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 88 ~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 456999999999999765
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.49 Score=48.87 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=14.3
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
+++.||||+|||..+-
T Consensus 599 ~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 599 FLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999998764
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.25 Score=42.19 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=35.6
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.|..+++.+++|+|||..++..+.+.+.+ +.++++++-. .-.++..+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC-CCHHHHHHHHHHc
Confidence 35568999999999998766555554433 3477777654 4466666666665
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.5 Score=41.72 Aligned_cols=89 Identities=19% Similarity=0.229 Sum_probs=50.0
Q ss_pred cccccCCCcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhh-------hhhCC-----CcEEEeCCCCCc
Q 015093 22 NLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIV-------PFCKG-----LDVIQQAQSGTG 89 (413)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~-------~~~~~-----~~~lv~~~tGsG 89 (413)
+.+....++|..++++..+. +|.+++..+.....|+-.-.+.-.+.++ .+... .++++.+|+|||
T Consensus 474 e~lkV~r~DFl~aL~dVkPA---FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sG 550 (744)
T KOG0741|consen 474 ENLKVTRGDFLNALEDVKPA---FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSG 550 (744)
T ss_pred hheeecHHHHHHHHHhcCcc---cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCC
Confidence 33444556777777666554 4778888887777766432222222221 11111 348999999999
Q ss_pred hhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 90 KTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 90 KT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
||..+.- +.....-+.+=++.|..
T Consensus 551 KTaLAA~-----iA~~S~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 551 KTALAAK-----IALSSDFPFVKIISPED 574 (744)
T ss_pred hHHHHHH-----HHhhcCCCeEEEeChHH
Confidence 9955422 22223334556666643
|
|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.84 Score=36.96 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=31.4
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
++|.|++|||||..+...+.. .+.+++++......-..+.+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 588999999999876544432 234788887777776666666554
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.21 Score=48.88 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=20.0
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
.+++++++||||||||... .+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3567999999999999764 44555543
|
|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.076 Score=56.87 Aligned_cols=93 Identities=26% Similarity=0.411 Sum_probs=75.7
Q ss_pred cEEEEEcCcccHHHHHHHHhhCC-CeeEeecCCCC-----------HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC
Q 015093 281 QSVIFVNTRRKVDWLTDQMRSRD-HTVSATHGDMD-----------QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348 (413)
Q Consensus 281 ~~lIf~~~~~~a~~l~~~l~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~ 348 (413)
-.++|++....+....+.+.... ..+..+.|... ...+++++..|....+++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999999988888887642 23333444332 2346778888999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCC
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRF 373 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~ 373 (413)
+.++.++.|.....|+|..||+.+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999665
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.4 Score=40.97 Aligned_cols=38 Identities=3% Similarity=0.037 Sum_probs=22.7
Q ss_pred cEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 184 RMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 184 ~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
+++++|++|.+. .....+..+++.....-+.+++|++-
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCC
Confidence 379999999763 23455666666665533334455553
|
|
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.28 Score=49.48 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-CceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-LQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|++-|++++... .+.++|.+..|||||.+...-+...+.... ....++.++=|+-.+.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999999876 666999999999999988777766665532 223578888788778888888887764
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.18 Score=43.23 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=28.9
Q ss_pred ChHHHHHHHHcCCCCCCCccEEEEccchhhh-c----cCcHHHHHHHHhhCCC-CceEEEEeeeC
Q 015093 165 TPGRVFDMLRRQSLRPDYIRMFVLDEADEML-S----RGFKDQIYDIFQHLPG-KIQVGVFSATM 223 (413)
Q Consensus 165 T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~----~~~~~~~~~~~~~~~~-~~~~i~lSAT~ 223 (413)
+...+...+...... -+||+||+|.+. . ..+...+..++..... ....+.++++.
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344445555443221 689999999987 2 2344556666666322 22334466665
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.8 Score=38.64 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC---CceEEEEeeeC
Q 015093 168 RVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG---KIQVGVFSATM 223 (413)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~---~~~~i~lSAT~ 223 (413)
.++..+..+......--++|+||+|.+........+..++..... .+-++++|.-.
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 344444444333332346788999988777666666666655542 23345555444
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.25 Score=43.17 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=27.9
Q ss_pred EEEeCCCCCchhHHHHHHHHHhccc---ccCceeEEEEcccHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDY---ESLQCQALVLAPTREL 120 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~---~~~~~~~lvl~P~~~l 120 (413)
.=|+|+.|+|||...+..++..... ...+.+++|+.-....
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 5689999999998776655554432 2334578888765443
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.43 Score=41.09 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=27.6
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEccc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPT 117 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~ 117 (413)
.|.-+.+.+|+|+|||..++..+....... ..+..++++..-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 355589999999999988766655433222 112467777753
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.35 Score=46.07 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=57.4
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEE-CCcchHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACV-GGTSVREDQ 152 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 152 (413)
+..|.-++|.|.||.|||..++-.+...... .+.+++++.. ..-..|+..++-.... ++....+. +......+.
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~--~g~~vl~fSl-Ems~~~l~~R~~a~~~--~v~~~~~~~~~l~~~e~~ 272 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALR--EGKSVAIFSL-EMSKEQLAYKLLCSEA--NVDMLRLRTGNLEDKDWE 272 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHH--cCCcEEEEec-CCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHH
Confidence 3345558899999999998776555432212 1336776654 3345555555433322 22222121 222222221
Q ss_pred HHHh-----cCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 153 RILS-----AGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 153 ~~~~-----~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
.... ....+.|- |++.+...+++.... ..+++||||=.|.+.
T Consensus 273 ~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~-~~~~~vvIDylql~~ 324 (444)
T PRK05595 273 NIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIE-HGIDMILIDYLQLMS 324 (444)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEeHHHhcc
Confidence 1111 12344443 334444333332111 237899999999775
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.16 Score=49.96 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=45.2
Q ss_pred HHHHhcCCCeEEEEeCccccCCCCCCCCEE--------EEcCCCCChhHHHhhhcccCCCCC
Q 015093 322 MREFRSGSSRVLITTDLLARGIDVQQVSLV--------INYDLPTQPENYLHRIGRSGRFGR 375 (413)
Q Consensus 322 ~~~f~~~~~~vli~t~~~~~G~d~~~~~~v--------i~~~~~~s~~~~~Q~~GR~~R~g~ 375 (413)
.+.|-+|+..|-|-+.+++.||.+..-+-| |-+.+|||...-+|.+||++|.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 356788999999999999999998754433 457899999999999999999865
|
|
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.35 Score=40.14 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=36.1
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccc-------cCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYE-------SLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-------~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|.-+++.||+|+|||...+..+...+... ..+.+++++..-.. ..++.+.+.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 566799999999999988766555554311 13457888876555 5567777776653
|
|
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.18 Score=44.12 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=25.1
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
++|.||||+||+.. +-.++..-.-......+++|+|.+.-
T Consensus 90 ~~VYGPTG~GKSqL-lRNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-LRNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHHH-HHHhhhcCcccCCCCceEEECCCCCC
Confidence 78899999999953 22222211112223479999998754
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.5 Score=39.74 Aligned_cols=39 Identities=5% Similarity=0.220 Sum_probs=26.6
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...+++|+||+|.+... -...+.+.+...|+...++++|
T Consensus 92 ~~~kv~iI~~ad~m~~~-a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQ-AQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHhcCCCCCeEEEEEe
Confidence 34689999999987432 3556667777766666566554
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.46 Score=44.94 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=28.2
Q ss_pred ccEEEEccchhhhccC------c-HHHHHHH---HhhCCCCceEEEEeeeCChhHH
Q 015093 183 IRMFVLDEADEMLSRG------F-KDQIYDI---FQHLPGKIQVGVFSATMPPEAL 228 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~------~-~~~~~~~---~~~~~~~~~~i~lSAT~~~~~~ 228 (413)
.++|.|||.+.+.... + ...++.+ +.-+.++--+|.+.||--++..
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 5789999999876432 1 1122222 2334556679999999765443
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.85 Score=46.63 Aligned_cols=38 Identities=13% Similarity=0.292 Sum_probs=27.4
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
+.++|+||||.+.. .-...+.+++...+..+.+++.+-
T Consensus 631 ~KVvIIDEaD~Lt~-~AQnALLk~lEep~~~~~FILi~N 668 (846)
T PRK04132 631 FKIIFLDEADALTQ-DAQQALRRTMEMFSSNVRFILSCN 668 (846)
T ss_pred CEEEEEECcccCCH-HHHHHHHHHhhCCCCCeEEEEEeC
Confidence 57999999998843 346677777777777776665533
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.2 Score=43.43 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=34.1
Q ss_pred cccCccCCCCCHHHHHHHHh---CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 38 VYDSFDSMGLKENLLRGIYA---YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+-.+|++.|=-+++...+++ +....|-.+.+-.+ ...+.+|+.+|+|.|||+++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 34566666655555555543 33334444444443 23577999999999999876
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.4 Score=38.14 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=32.3
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcc---------cccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLD---------YESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~---------~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
-.++.+|.|+|||..++..++.... ......+++|+.--. -..+..+++..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed-~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED-PREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC-CHHHHHHHHHHHHh
Confidence 3689999999999887666554321 112344788888322 22344445555544
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.4 Score=40.48 Aligned_cols=38 Identities=21% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHhhhhhhh---CCCcEEEeCCCCCchhHHHHHHHHHhccc
Q 015093 66 IQQRGIVPFC---KGLDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 66 ~Q~~~~~~~~---~~~~~lv~~~tGsGKT~~~~~~i~~~l~~ 104 (413)
.-.++++.+. +|+..+|.||.|+|||...- -+...+.+
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~-~la~~i~~ 159 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQ-QIAAAVAA 159 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 3445565554 57889999999999997643 34444433
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.18 Score=44.19 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=21.8
Q ss_pred hhhhhhhCCCcEEEeCCCCCchhHHHH
Q 015093 69 RGIVPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 69 ~~~~~~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
+++..+..++.+++.||+|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 444556678899999999999998764
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=92.01 E-value=1 Score=46.81 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.5
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
++.++.||+|.|||..+-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 569999999999997764
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.99 E-value=4.8 Score=40.69 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=62.4
Q ss_pred CcEEEEEcCcccHHHHHHHHhhCC-------CeeEeecCCCCHHHHHHHHHHHhc--------CCCeEEEEeCccccCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSRD-------HTVSATHGDMDQNSRDIIMREFRS--------GSSRVLITTDLLARGID 344 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~--------~~~~vli~t~~~~~G~d 344 (413)
..+|||.|+....+.+...++..+ ..-..+--. +..+-.+++..|.+ |..-+.||--..++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 349999999987777755554321 111112111 23333444444432 22234466668999999
Q ss_pred CCC--CCEEEEcCCCC--------------------------------------ChhHHHhhhcccCCCCCcceEEEEec
Q 015093 345 VQQ--VSLVINYDLPT--------------------------------------QPENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 345 ~~~--~~~vi~~~~~~--------------------------------------s~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
+.+ .+.||..+.|. ....+-|.+||+-|+.++=-++++++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 974 77788888762 11235799999999877644444554
Q ss_pred c
Q 015093 385 R 385 (413)
Q Consensus 385 ~ 385 (413)
.
T Consensus 721 ~ 721 (945)
T KOG1132|consen 721 D 721 (945)
T ss_pred c
Confidence 4
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.24 Score=42.40 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=23.5
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+++|.|++|||||... .-++..+...- ..+++++|
T Consensus 15 r~viIG~sGSGKT~li-~~lL~~~~~~f--~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLI-KSLLYYLRHKF--DHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHH-HHHHHhhcccC--CEEEEEec
Confidence 5899999999999654 44444433322 36677777
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.7 Score=43.76 Aligned_cols=39 Identities=23% Similarity=0.172 Sum_probs=25.1
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
++++.||||.|||..+-..+ ..+.... ..++-....+-.
T Consensus 523 sFlF~GPTGVGKTELAkaLA-~~Lfg~e---~aliR~DMSEy~ 561 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALA-EALFGDE---QALIRIDMSEYM 561 (786)
T ss_pred EEEeeCCCcccHHHHHHHHH-HHhcCCC---ccceeechHHHH
Confidence 58999999999998874333 3333222 566666655543
|
|
| >PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.23 Score=42.55 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=28.3
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
++++.|.|.||||||...-. +++.+.. ..+.+++|+=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~-~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK-KKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh-cCCCCEEEEcCCCc
Confidence 57899999999999987644 4444432 22347788777654
|
It contains several conserved aspartates and histidines that could be metal ligands. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.21 Score=44.97 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=20.1
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
+..+.++++.||||||||... .+++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccC
Confidence 345778999999999999654 3344333
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.27 Score=41.30 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=23.3
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
+.+..+++|.|.||||||......+...+........-++++..+
T Consensus 35 l~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 35 LKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp GGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred cCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 334558999999999999876544444443222222334444433
|
The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A. |
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.19 Score=46.97 Aligned_cols=47 Identities=26% Similarity=0.237 Sum_probs=34.2
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
++++.||||||||.++++|-+-.. ...++|+=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999988876654332 23788888888888766655444
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 413 | ||||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 1e-159 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 1e-158 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 1e-151 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 1e-151 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 1e-151 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 1e-150 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 1e-150 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 1e-149 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 1e-129 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 1e-123 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 2e-83 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 5e-78 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 1e-75 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 6e-74 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 8e-74 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 2e-71 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 3e-70 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 6e-70 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 6e-70 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 6e-70 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 9e-69 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 2e-68 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 3e-68 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 1e-65 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 2e-64 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 2e-58 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 6e-52 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 4e-51 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 5e-51 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 8e-42 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 4e-37 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 5e-37 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 5e-36 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 7e-36 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 7e-36 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 8e-36 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 2e-35 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 7e-35 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 1e-34 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 2e-34 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 1e-32 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 1e-31 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 5e-29 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 5e-29 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 8e-29 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 1e-28 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 1e-28 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 2e-26 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 3e-25 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 8e-25 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 4e-24 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 3e-21 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 3e-21 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 4e-21 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 3e-20 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 9e-20 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 2e-19 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 1e-18 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 4e-18 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 1e-15 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 4e-15 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 4e-15 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 5e-15 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 5e-15 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 7e-15 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 2e-08 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 2e-08 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 6e-05 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 2e-04 | ||
| 2v1x_A | 591 | Crystal Structure Of Human Recq-Like Dna Helicase L | 3e-04 | ||
| 4i1s_A | 243 | Melanoma Differentiation Associated Protein-5 Helic | 4e-04 | ||
| 1gm5_A | 780 | Structure Of Recg Bound To Three-Way Dna Junction L | 5e-04 |
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 | Back alignment and structure |
|
| >pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 | Back alignment and structure |
|
| >pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction Length = 780 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 714 bits (1846), Expect = 0.0
Identities = 259/413 (62%), Positives = 319/413 (77%), Gaps = 5/413 (1%)
Query: 1 MEGIAPEGSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
+A GS + +M + E ++ +V +FD+MGL+E+LLRGIYAYGF
Sbjct: 3 TATMATSGSARKRLLKEEDMTKVEFETSEE-----VDVTPTFDTMGLREDLLRGIYAYGF 57
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQR I KG DVI Q+QSGTGKTATF +LQ LD + + QAL+LAPTREL
Sbjct: 58 EKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTREL 117
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP 180
A QI+K + ALGDYM V+ HAC+GGT+V ED R L G HVV GTPGRVFDM+RR+SLR
Sbjct: 118 AVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 177
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
I+M VLDEADEML++GFK+QIYD++++LP QV + SAT+P E LE+T KFM P+R
Sbjct: 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIR 237
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMR 300
ILVKRDELTLEGIKQF V V++EEWK DTLCDLY+TL ITQ+VIF NT+RKVDWLT++MR
Sbjct: 238 ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR 297
Query: 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360
+ TVS+ HGDM Q R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP
Sbjct: 298 EANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNR 357
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
E Y+HRIGRSGR+GRKGVAINFV DD R+L DI+++Y+ I+E+P NVADLI
Sbjct: 358 ELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 708 bits (1830), Expect = 0.0
Identities = 282/414 (68%), Positives = 328/414 (79%), Gaps = 5/414 (1%)
Query: 5 APEGSGFDARSFDSNMNNLLSEEGQD----FFVSYDEVYDSFDSMGLKENLLRGIYAYGF 60
P GS + + + +G + +++E+ DSFD M L E+LLRGIYAYGF
Sbjct: 1 GPLGSPEFMSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGF 60
Query: 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120
EKPSAIQQR I+P KG DVI QAQSGTGKTATF ILQQ++ + QALVLAPTREL
Sbjct: 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTREL 120
Query: 121 AQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQSLR 179
AQQI+KV+ ALGDYMG HAC+GGT+VR + + L H++VGTPGRVFDML R+ L
Sbjct: 121 AQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLS 180
Query: 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPV 239
P YI+MFVLDEADEMLSRGFKDQIYDIFQ L QV + SATMP + LE+T+KFM P+
Sbjct: 181 PKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPI 240
Query: 240 RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM 299
RILVK++ELTLEGI+QF++NV++EEWKLDTLCDLYETL ITQ+VIF+NTRRKVDWLT++M
Sbjct: 241 RILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM 300
Query: 300 RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359
+RD TVSA HGDMDQ RD+IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT
Sbjct: 301 HARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 360
Query: 360 PENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
ENY+HRIGR GRFGRKGVAIN VT +D R L DI+ FYN IEE+P NVADLI
Sbjct: 361 RENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 701 bits (1813), Expect = 0.0
Identities = 238/387 (61%), Positives = 297/387 (76%), Gaps = 1/387 (0%)
Query: 27 EGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQS 86
E +YD+V FD M L ENLLRG++ YGFE+PSAIQQR I+P +G DV+ QAQS
Sbjct: 8 EESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQS 67
Query: 87 GTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGT 146
GTGKT TF LQ++D QAL+LAPTRELA QI+KV+ AL +M +KVHAC+GGT
Sbjct: 68 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGT 127
Query: 147 SVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDI 206
S ED L +VVGTPGRVFD ++R+ R D I+MF+LDEADEMLS GFK+QIY I
Sbjct: 128 SFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 186
Query: 207 FQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWK 266
F LP QV + SATMP + LE+T KFM PVRILVK+DELTLEGIKQF+VNV++EE+K
Sbjct: 187 FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK 246
Query: 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFR 326
+ L DLY+++++TQ+VIF NTRRKV+ LT ++R+ TVSA + D+ Q RD IM+EFR
Sbjct: 247 YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 306
Query: 327 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 386
SGSSR+LI+TDLLARGIDVQQVSLVINYDLP ENY+HRIGR GRFGRKGVAINFVT +
Sbjct: 307 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 366
Query: 387 DDRMLADIQRFYNVVIEELPANVADLI 413
D + ++++FY+ IEELP+++A L+
Sbjct: 367 DVGAMRELEKFYSTQIEELPSDIATLL 393
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 658 bits (1700), Expect = 0.0
Identities = 153/379 (40%), Positives = 223/379 (58%), Gaps = 2/379 (0%)
Query: 35 YDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94
+ ++F+ LK LL GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F
Sbjct: 16 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAF 75
Query: 95 CSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154
L+++ + + QAL++ PTRELA Q +V+R LG + G+ GGT++R+D
Sbjct: 76 VIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 135
Query: 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214
L+ VH++VGTPGRV D+ R+ +F++DEAD+MLSR FK I I LP
Sbjct: 136 LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 195
Query: 215 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY 274
Q +FSAT P E K ++KP I + +ELTL+GI Q++ V +E KL L L+
Sbjct: 196 QSLLFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFV-EERQKLHCLNTLF 253
Query: 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLI 334
L I Q++IF N+ +V+ L ++ ++ +H M Q R+ + EFR G R L+
Sbjct: 254 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 313
Query: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394
+DLL RGID+Q V++VIN+D P E YLHRIGRSGRFG G+AIN + +D L I
Sbjct: 314 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 373
Query: 395 QRFYNVVIEELPANVADLI 413
++ I +PA + +
Sbjct: 374 EQELGTEIAAIPATIDKSL 392
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 643 bits (1662), Expect = 0.0
Identities = 150/389 (38%), Positives = 223/389 (57%), Gaps = 15/389 (3%)
Query: 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATF 94
SF+ + LK LL+G+YA GF +PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81
Query: 95 CSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQR 153
+L Q++ + Q L L+PT ELA Q KV+ +G + +K+ V G + Q+
Sbjct: 82 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 141
Query: 154 ILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLP 211
I +V+GTPG V D + + + P I++FVLDEAD M++ +G +DQ I + LP
Sbjct: 142 I---SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 198
Query: 212 GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLC 271
Q+ +FSAT + +K + P I +KR+E TL+ IKQ++V + K LC
Sbjct: 199 RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 258
Query: 272 DLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR 331
+LY + I Q++IF +TR+ WL ++ H V+ G+M R ++ FR G +
Sbjct: 259 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 318
Query: 332 VLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFVT- 384
VL+TT++ ARGIDV+QVS+VIN+DLP E YLHRIGR+GRFG++G+A+N V
Sbjct: 319 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 378
Query: 385 RDDDRMLADIQRFYNVVIEELPANVADLI 413
+ +L IQ +N IE L + D I
Sbjct: 379 KHSMNILNRIQEHFNKKIERLDTDDLDEI 407
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 637 bits (1646), Expect = 0.0
Identities = 150/387 (38%), Positives = 235/387 (60%), Gaps = 15/387 (3%)
Query: 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFC 95
+ SFD +GL LL+GIYA F+KPS IQ+R + ++I Q+QSGTGKTA F
Sbjct: 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62
Query: 96 SGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155
+L +++ E QA+ LAP+RELA+Q +V++ +G + + V + + Q
Sbjct: 63 LTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI-- 120
Query: 156 SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML-SRGFKDQIYDIFQHLPGKI 214
V+VGTPG V D++RR+ ++ I++FVLDEAD ML +G DQ + + LP
Sbjct: 121 --NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT 178
Query: 215 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY 274
Q+ +FSAT + +K + + ++ +E+ ++ IKQ +++ E K D L +LY
Sbjct: 179 QLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238
Query: 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLI 334
+ I S+IFV T++ + L +++S H VS HGD+ RD ++ +FR G S+VLI
Sbjct: 239 GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI 298
Query: 335 TTDLLARGIDVQQVSLVINYDLPTQ------PENYLHRIGRSGRFGRKGVAINFVT-RDD 387
TT++LARGID+ VS+V+NYDLPT P Y+HRIGR+GRFGRKGVAI+FV ++
Sbjct: 299 TTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358
Query: 388 DRMLADIQRFY-NVVIEELPANVADLI 413
+L+ IQ+++ ++ + +P + D +
Sbjct: 359 FNILSAIQKYFGDIEMTRVPTDDWDEV 385
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 640 bits (1653), Expect = 0.0
Identities = 150/389 (38%), Positives = 223/389 (57%), Gaps = 15/389 (3%)
Query: 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATF 94
SF+ + LK LL+G+YA GF +PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148
Query: 95 CSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQR 153
+L Q++ + Q L L+PT ELA Q KV+ +G + +K+ V G + Q+
Sbjct: 149 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 208
Query: 154 ILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQHLP 211
I +V+GTPG V D + + + P I++FVLDEAD M++ +G +DQ I + LP
Sbjct: 209 I---SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265
Query: 212 GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLC 271
Q+ +FSAT + +K + P I +KR+E TL+ IKQ++V + K LC
Sbjct: 266 RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 325
Query: 272 DLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR 331
+LY + I Q++IF +TR+ WL ++ H V+ G+M R ++ FR G +
Sbjct: 326 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 385
Query: 332 VLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFVT- 384
VL+TT++ ARGIDV+QVS+VIN+DLP E YLHRIGR+GRFG++G+A+N V
Sbjct: 386 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 445
Query: 385 RDDDRMLADIQRFYNVVIEELPANVADLI 413
+ +L IQ +N IE L + D I
Sbjct: 446 KHSMNILNRIQEHFNKKIERLDTDDLDEI 474
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 613 bits (1582), Expect = 0.0
Identities = 148/381 (38%), Positives = 219/381 (57%), Gaps = 6/381 (1%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
S + F LK LLR I GFE PS +Q I G+DV+ QA+SG GKTA
Sbjct: 2 SPGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV 61
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQ 152
F LQQL+ + Q LV+ TRELA QI K YM VKV GG S+++D+
Sbjct: 62 FVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 153 RILSAGV-HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHL 210
+L H+VVGTPGR+ + R +SL +I+ F+LDE D+ML + + + +IF+
Sbjct: 122 EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT 181
Query: 211 PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFHVNVDKEEWKLDT 269
P + QV +FSAT+ E + RKFM P+ I V + +LTL G++Q++V + K+ K
Sbjct: 182 PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRK 240
Query: 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS 329
L DL + L Q VIFV + ++ L + ++ A H M Q R ++F+
Sbjct: 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 300
Query: 330 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD- 388
R+L+ T+L RG+D+++V++ NYD+P + YLHR+ R+GRFG KG+AI FV+ ++D
Sbjct: 301 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 360
Query: 389 RMLADIQRFYNVVIEELPANV 409
++L D+Q + V I ELP +
Sbjct: 361 KILNDVQDRFEVNISELPDEI 381
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 407 bits (1048), Expect = e-144
Identities = 135/225 (60%), Positives = 162/225 (72%), Gaps = 1/225 (0%)
Query: 27 EGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQS 86
E +YD+V FD M L ENLLRG++ YGFE+PSAIQQR I+P +G DV+ QAQS
Sbjct: 1 EESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQS 60
Query: 87 GTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGT 146
GTGKT TF LQ++D QAL+LAPTRELA QI+KV+ AL +M +KVHAC+GGT
Sbjct: 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGT 120
Query: 147 SVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDI 206
S ED L +VVGTPGRVFD ++R+ R D I+MF+LDEADEMLS GFK+QIY I
Sbjct: 121 SFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQI 179
Query: 207 FQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLE 251
F LP QV + SATMP + LE+T KFM PVRILVK+DELTLE
Sbjct: 180 FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLE 224
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 401 bits (1033), Expect = e-141
Identities = 149/234 (63%), Positives = 179/234 (76%), Gaps = 1/234 (0%)
Query: 14 RSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP 73
S+ L +G +++E+ D+FD M LKE+LLRGIYAYGFEKPSAIQQR I+P
Sbjct: 4 HHHHSSGRENLYFQGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIP 63
Query: 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGD 133
KG DVI QAQSGTGKTATF ILQQL+ E + QALVLAPTRELAQQI+KV+ ALGD
Sbjct: 64 CIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGD 123
Query: 134 YMGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEAD 192
YMG HAC+GGT+VR + + L + H+VVGTPGRVFDML R+ L P +I+MFVLDEAD
Sbjct: 124 YMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 183
Query: 193 EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246
EMLSRGFKDQIY+IFQ L IQV + SATMP + LE+T+KFM P+RILVK++
Sbjct: 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE 237
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 401 bits (1034), Expect = e-139
Identities = 129/369 (34%), Positives = 208/369 (56%), Gaps = 15/369 (4%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGIL 99
+F+ + L +N+L I GFEKP+ IQ + I F +++ QA++G+GKTA+F ++
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 100 QQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159
+ ++ E+ +A++L PTRELA Q+ + +L +K+ GG ++ + L
Sbjct: 67 ELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NA 124
Query: 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219
++VVGTPGR+ D + R +L ++ F+LDEADEML+ GF + I ++ +F
Sbjct: 125 NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLF 184
Query: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLC---DLYET 276
SATMP E L + +K+M I K I+Q +V V E + + LC E
Sbjct: 185 SATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEV-NENERFEALCRLLKNKEF 239
Query: 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT 336
+ +F T+R L +R A HGD+ Q+ R+ ++R F+ R+LI T
Sbjct: 240 YGL----VFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT 295
Query: 337 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQR 396
D+++RGIDV ++ VINY LP PE+Y+HRIGR+GR G+KG AI+ + R + + L I+R
Sbjct: 296 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355
Query: 397 FYNVVIEEL 405
+ I++L
Sbjct: 356 AMKLKIKKL 364
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 374 bits (962), Expect = e-129
Identities = 103/351 (29%), Positives = 171/351 (48%), Gaps = 18/351 (5%)
Query: 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES 106
+ E + + I GF+ + +Q + I +G +V+ +A++G+GKTA + IL+
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 107 LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTP 166
++LV+ PTREL +Q+ +R +G YM KV GG + + +VV TP
Sbjct: 56 -GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATP 113
Query: 167 GRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPE 226
GR+ D+ + + + ++DEAD M GF D I I + G+FSAT+P E
Sbjct: 114 GRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEE 173
Query: 227 ALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFV 286
++ + F+ I + L ++ V+V + ++FV
Sbjct: 174 IRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKD---DWRSKVQALRENKDKGVIVFV 227
Query: 287 NTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346
TR +V L + GD+ Q+ R+ + FR G +LITTD+ +RG+D+
Sbjct: 228 RTRNRVAKLVRLFDN----AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIP 283
Query: 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRF 397
V VIN+D P Y+HRIGR+GR GRKG AI F+ + + ++++
Sbjct: 284 LVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILN-EYWLEKEVKKV 333
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 366 bits (940), Expect = e-122
Identities = 108/398 (27%), Positives = 193/398 (48%), Gaps = 31/398 (7%)
Query: 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP--FCKGLDVIQQAQSGTGKTATFCSG 97
+ L + + + I F + +QQ+ I P + DVI +A++GTGKT F
Sbjct: 21 SLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIP 80
Query: 98 ILQQLDYESLQ----CQALVLAPTRELAQQIEKVMRALGDYM----GVKVHACVGGTSV- 148
I Q L +A+++APTR+LA QIE ++ + D + VGGT
Sbjct: 81 IFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR 140
Query: 149 REDQRILSAGVHVVVGTPGRVFDMLRRQSLR-PDYIRMFVLDEADEMLSRGFKDQIYDIF 207
++ ++V+ TPGR+ D+L + S + ++ VLDEAD +L GF+D + I
Sbjct: 141 AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETIS 200
Query: 208 QHLPGK-------IQVGVFSATMPPEALEITRKFMNKPVRILV----KRDELTLEGIKQF 256
L K I+ +FSAT+ + ++ MNK + + K + E I Q
Sbjct: 201 GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 260
Query: 257 HVNVDKEEWKL-----DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRS---RDHTVSA 308
V +K + + E + +++IF T + +L +++ +D +
Sbjct: 261 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 320
Query: 309 THGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 368
HG + QN R +++ F+ S +L+ TD+ ARG+D V V+ +P++ NY+HRIG
Sbjct: 321 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 380
Query: 369 RSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406
R+ R G++G ++ F+ +D+ + +++ N+VI +
Sbjct: 381 RTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 418
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 364 bits (936), Expect = e-122
Identities = 113/426 (26%), Positives = 202/426 (47%), Gaps = 31/426 (7%)
Query: 12 DARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGI 71
D FD + L ++ + + L + + + I F + +QQ+ I
Sbjct: 44 DEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTI 103
Query: 72 VPF--CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQ----CQALVLAPTRELAQQIE 125
P + DVI +A++GTGKT F I Q L +A+++APTR+LA QIE
Sbjct: 104 KPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIE 163
Query: 126 KVMRALGDY----MGVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLR- 179
++ + D + VGGT R ++ ++V+ TPGR+ D+L + S +
Sbjct: 164 AEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223
Query: 180 PDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGK-------IQVGVFSATMPPEALEITR 232
++ VLDEAD +L GF+D + I L K I+ +FSAT+ + ++
Sbjct: 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLAN 283
Query: 233 KFMNKPVRILV----KRDELTLEGIKQFHVNVDKEEWKL-----DTLCDLYETLAITQSV 283
MNK + + K + E I Q V +K + + E + +++
Sbjct: 284 NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAI 343
Query: 284 IFVNTRRKVDWLTDQMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340
IF T + +L +++ +D + HG + QN R +++ F+ S +L+ TD+ A
Sbjct: 344 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 403
Query: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNV 400
RG+D V V+ +P++ NY+HRIGR+ R G++G ++ F+ +D+ + +++ N+
Sbjct: 404 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 463
Query: 401 VIEELP 406
VI +
Sbjct: 464 VIAKQE 469
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 348 bits (894), Expect = e-120
Identities = 84/206 (40%), Positives = 121/206 (58%), Gaps = 3/206 (1%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
F+S+ L +L G+ A GFE+PS +Q + I GLD+I QA+SGTGKT F + L
Sbjct: 25 DFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALD 84
Query: 101 QLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGV 159
L E+L Q L+LAPTRE+A QI V+ A+G M G++ H +GGT + +D+ L
Sbjct: 85 SLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KC 143
Query: 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHLPGKIQVGV 218
H+ VG+PGR+ ++ L P IR+F+LDEAD++L G F++QI I+ LP Q+
Sbjct: 144 HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLA 203
Query: 219 FSATMPPEALEITRKFMNKPVRILVK 244
SAT P K+M P + +
Sbjct: 204 VSATYPEFLANALTKYMRDPTFVRLN 229
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 336 bits (863), Expect = e-114
Identities = 79/218 (36%), Positives = 119/218 (54%), Gaps = 8/218 (3%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKT 91
S SF+ + LK LL+G+YA GF +PS IQ+ + ++I Q+QSGTGKT
Sbjct: 86 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKT 145
Query: 92 ATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVRE 150
A F +L Q++ + Q L L+PT ELA Q KV+ +G + +K+ V G +
Sbjct: 146 AAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205
Query: 151 DQRILSAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEADEMLS-RGFKDQIYDIFQ 208
Q+I +V+GTPG V D + + P I++FVLDEAD M++ +G +DQ I +
Sbjct: 206 GQKI---SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQR 262
Query: 209 HLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246
LP Q+ +FSAT + +K + P I +KR+
Sbjct: 263 MLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 327 bits (842), Expect = e-113
Identities = 105/164 (64%), Positives = 137/164 (83%)
Query: 250 LEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSAT 309
LEGIKQF+VNV++EE+K + L DLY+++++TQ+VIF NTRRKV+ LT ++R+ TVSA
Sbjct: 1 LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAI 60
Query: 310 HGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 369
+ D+ Q RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP ENY+HRIGR
Sbjct: 61 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 120
Query: 370 SGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
GRFGRKGVAINFVT +D + ++++FY+ IEELP+++A L+
Sbjct: 121 GGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 164
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-112
Identities = 117/359 (32%), Positives = 193/359 (53%), Gaps = 9/359 (2%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----S 96
F S L++ ++ + G++ P+ IQ+ I G D++ AQ+G+GKTA F S
Sbjct: 57 HFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILS 116
Query: 97 GILQQLDYESLQ-CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155
+L+ L Q ++++PTRELA QI R +K+ GGTS R +
Sbjct: 117 KLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI 176
Query: 156 SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQH--LPGK 213
+ G HVV+ TPGR+ D + R + + R VLDEAD ML GF + + I H + +
Sbjct: 177 TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE 236
Query: 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273
Q +FSAT P E + +F+ V + + +KQ + + K L ++
Sbjct: 237 HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ-TIYEVNKYAKRSKLIEI 295
Query: 274 YETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL 333
A +++FV T+R D+L + ++ ++ HGD Q+ R+ +R+F++GS +VL
Sbjct: 296 LSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVL 354
Query: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392
I T + +RG+D++ + VINYD+P++ ++Y+HRIGR+GR G G A +F + DR +A
Sbjct: 355 IATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 413
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 331 bits (852), Expect = e-111
Identities = 126/377 (33%), Positives = 190/377 (50%), Gaps = 24/377 (6%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----S 96
SF + + E ++ I + +P+ +Q+ I + D++ AQ+G+GKTA F S
Sbjct: 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 75
Query: 97 GILQQLDYESLQC--------------QALVLAPTRELAQQIEKVMRALGDYMGVKVHAC 142
I E+L+ +LVLAPTRELA QI + R V+
Sbjct: 76 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 135
Query: 143 VGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQ 202
GG + + R L G H++V TPGR+ DM+ R + D+ + VLDEAD ML GF+ Q
Sbjct: 136 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 195
Query: 203 IYDIFQHL----PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHV 258
I I + G +FSAT P E + R F+++ + + V R T E I Q V
Sbjct: 196 IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 255
Query: 259 NVDKEEWKLDTLCDLYETLAITQSV-IFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNS 317
V++ + K L DL +FV T++ D L D + + ++ HGD Q
Sbjct: 256 WVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRD 314
Query: 318 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 377
R+ + +FRSG S +L+ T + ARG+D+ V VIN+DLP+ E Y+HRIGR+GR G G
Sbjct: 315 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 374
Query: 378 VAINFVTRDDDRMLADI 394
+A +F + + D+
Sbjct: 375 LATSFFNERNINITKDL 391
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = e-108
Identities = 92/220 (41%), Positives = 124/220 (56%), Gaps = 4/220 (1%)
Query: 28 GQDFFVSYDEVYDS-FDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQS 86
G D SY ++ S F LK LLR I GFE PS +Q I G+DV+ QA+S
Sbjct: 1 GSDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 60
Query: 87 GTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGG 145
G GKTA F LQQL+ + Q LV+ TRELA QI K YM VKV GG
Sbjct: 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 120
Query: 146 TSVREDQRILSAGV-HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQI 203
S+++D+ +L H+VVGTPGR+ + R +SL +I+ F+LDE D+ML + + +
Sbjct: 121 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 180
Query: 204 YDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243
+IF+ P + QV +FSAT+ E + RKFM P+ I V
Sbjct: 181 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = e-108
Identities = 74/173 (42%), Positives = 107/173 (61%), Gaps = 6/173 (3%)
Query: 247 ELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTV 306
LTL I+Q++V + + K LC++Y ++ I Q++IF TRR WLT +M H V
Sbjct: 2 MLTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQV 61
Query: 307 SATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ------P 360
S G++ R I++ FR G +VLITT++ ARGIDV+QV++V+N+DLP +
Sbjct: 62 SLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDY 121
Query: 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
E YLHRIGR+GRFG+KG+A N + D+ L IQ +N I++L A D I
Sbjct: 122 ETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNAEDMDEI 174
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = e-105
Identities = 78/203 (38%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
Query: 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 99
+ F+ LK LL GI+ G+EKPS IQ+ I G D++ +A++GTGK+ + +L
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 100 QQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAG 158
++LD + QA+V+ PTRELA Q+ ++ + +M G KV A GGT++R+D L
Sbjct: 63 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122
Query: 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGV 218
VHVV+ TPGR+ D++++ + D+++M VLDEAD++LS+ F + DI LP Q+ +
Sbjct: 123 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 182
Query: 219 FSATMPPEALEITRKFMNKPVRI 241
+SAT P + + KP I
Sbjct: 183 YSATFPLSVQKFMNSHLEKPYEI 205
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 290 bits (745), Expect = 1e-98
Identities = 58/162 (35%), Positives = 97/162 (59%), Gaps = 2/162 (1%)
Query: 249 TLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSA 308
+L G++Q++V + K+ K L DL + L Q VIFV + ++ L + ++ A
Sbjct: 2 SLHGLQQYYVKL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIA 60
Query: 309 THGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 368
H M Q R ++F+ R+L+ T+L RG+D+++V++ NYD+P + YLHR+
Sbjct: 61 IHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVA 120
Query: 369 RSGRFGRKGVAINFVTRDDD-RMLADIQRFYNVVIEELPANV 409
R+GRFG KG+AI FV+ ++D ++L D+Q + V I ELP +
Sbjct: 121 RAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 284 bits (730), Expect = 2e-96
Identities = 67/161 (41%), Positives = 95/161 (59%), Gaps = 1/161 (0%)
Query: 247 ELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTV 306
LT I+ + V +EE K L D+ T +IF T+ V+ LTD++ +
Sbjct: 4 GLTTRNIEHAVIQV-REENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPC 62
Query: 307 SATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366
HG M Q R +M EF+ G R L+ TD+ ARGID++ +SLVINYDLP + E+Y+HR
Sbjct: 63 DKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHR 122
Query: 367 IGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPA 407
GR+GR G KG AI+FVT + R LADI+ + I+++ A
Sbjct: 123 TGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEA 163
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 3e-90
Identities = 62/392 (15%), Positives = 128/392 (32%), Gaps = 50/392 (12%)
Query: 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES 106
E+ + + Q+ +G A +G GKT L
Sbjct: 6 EYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGK 65
Query: 107 LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSV----REDQRILSAGVHVV 162
++ ++ PT L +Q + ++ L VK+ + ++ H++
Sbjct: 66 ---KSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHIL 121
Query: 163 VGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSAT 222
V + V R+ L +D+ D +L + +P +I FS
Sbjct: 122 VFSTQFVSK--NREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTI 179
Query: 223 MPPEALEITRK---------------------FMNKPVRILVKRDELTLEGIKQFHVNVD 261
+ E + + V R I ++
Sbjct: 180 KQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSR 239
Query: 262 KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDII 321
+E KL L +++ + IF T + L + ++ V T + ++N
Sbjct: 240 SKE-KLVELLEIFRDGIL----IFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN----- 289
Query: 322 MREFRSGSSRVLITTD----LLARGIDV-QQVSLVINYDLP--TQPENYLHRIGRSGRFG 374
+F+ G +LI L RG+D+ +++ VI + P Y+ GRS R
Sbjct: 290 FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRIL 349
Query: 375 RKGV--AINFVTRDDDRMLADIQRFYNVVIEE 404
+ ++ + +D+ + ++ ++ EE
Sbjct: 350 NGVLVKGVSVIFEEDEEIFESLKTRLLLIAEE 381
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 1e-82
Identities = 67/209 (32%), Positives = 108/209 (51%), Gaps = 4/209 (1%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
F + ++ I F KP+ IQ+R I +G ++ Q+Q+GTGKT + I++
Sbjct: 5 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 64
Query: 101 QLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM----GVKVHACVGGTSVREDQRILS 156
++ E + QA++ APTRELA QI + + + +GGT ++ L+
Sbjct: 65 KIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN 124
Query: 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQV 216
H+V+GTPGR+ D +R Q+L + V+DEAD ML GF + I +P +Q+
Sbjct: 125 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQM 184
Query: 217 GVFSATMPPEALEITRKFMNKPVRILVKR 245
VFSAT+P + +K+M P + V
Sbjct: 185 LVFSATIPEKLKPFLKKYMENPTFVHVLE 213
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 9e-73
Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 5/208 (2%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
F LK +L ++ G P+ IQ + +G D+I QA++GTGKT F I +
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 61
Query: 101 QLDYESLQC---QALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157
+L + +ALVL PTRELA Q+ + A+ ++ KV A GGT + + L
Sbjct: 62 RLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQKEALLR 119
Query: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217
G VV TPGR D LR+ L + + VLDEADEMLS GF++++ + P Q
Sbjct: 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTL 179
Query: 218 VFSATMPPEALEITRKFMNKPVRILVKR 245
+FSAT+P A + ++M PV I V +
Sbjct: 180 LFSATLPSWAKRLAERYMKNPVLINVIK 207
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 2e-70
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 1/205 (0%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
+F +G+ + L G+ KP+ IQ I +G D+I A++G+GKT F IL
Sbjct: 44 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 103
Query: 101 QLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVH 160
L + ALVL PTRELA QI + ALG +GV+ VGG L+ H
Sbjct: 104 ALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 163
Query: 161 VVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219
+++ TPGR+ D L ++ V+DEAD +L+ F+ ++ I + +P + +F
Sbjct: 164 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 223
Query: 220 SATMPPEALEITRKFMNKPVRILVK 244
SATM + ++ R + PV+ V
Sbjct: 224 SATMTKKVQKLQRAALKNPVKCAVS 248
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 6e-62
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 6/208 (2%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
F L + L+G+ + + IQ++ I +G DV+ A++G+GKT F +L+
Sbjct: 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 85
Query: 101 QLDYESLQ----CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156
L L+++PTRELA Q +V+R +G +GG ++ + ++
Sbjct: 86 ALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN 145
Query: 157 AGVHVVVGTPGRVFD-MLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215
++++V TPGR+ M S ++M VLDEAD +L GF D + + ++LP K Q
Sbjct: 146 -NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQ 204
Query: 216 VGVFSATMPPEALEITRKFMNKPVRILV 243
+FSAT ++ R + P + V
Sbjct: 205 TLLFSATQTKSVKDLARLSLKNPEYVWV 232
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 1e-59
Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 13/228 (5%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
+FD + L + I +++P+ IQ+ I + D++ AQ+G+GKTA F I+
Sbjct: 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 83
Query: 101 QLDYESLQC---------QALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVRED 151
L + L + L+LAPTRELA QI + ++ GG
Sbjct: 84 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQ 143
Query: 152 QRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL- 210
R + G H++V TPGR+ D + + + ++ + VLDEAD ML GF+ QI I +
Sbjct: 144 IREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESN 203
Query: 211 ---PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ 255
Q +FSAT P E ++ F+ + + V R T + IKQ
Sbjct: 204 MPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 8e-59
Identities = 54/154 (35%), Positives = 80/154 (51%)
Query: 251 EGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATH 310
+ I Q++ D E K L L + T+S++FV R +V L + +R
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE 61
Query: 311 GDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
G+M Q R+ ++ G VL+ TD+ ARGID+ VS V N+D+P + YLHRIGR+
Sbjct: 62 GEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRT 121
Query: 371 GRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEE 404
R GRKG AI+ V D +L + R+ I+
Sbjct: 122 ARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKA 155
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 3e-58
Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 12/215 (5%)
Query: 41 SFDSM----GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCS 96
+F + + LL+ I GF+ P+ IQ + I G +++ A +G+GKT F
Sbjct: 26 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 85
Query: 97 GILQQL-DYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ-RI 154
IL QL + +AL+++PTRELA QI + + + + G ++H +
Sbjct: 86 PILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPK 145
Query: 155 LSAGVHVVVGTPGRVFDMLRRQSLRPD--YIRMFVLDEADEML---SRGFKDQIYDIFQH 209
S ++V TP R+ +L++ D + V+DE+D++ GF+DQ+ IF
Sbjct: 146 SSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLA 205
Query: 210 L-PGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243
K++ +FSAT + + + ++ + + +
Sbjct: 206 CTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSI 240
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 7e-56
Identities = 68/208 (32%), Positives = 96/208 (46%), Gaps = 5/208 (2%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----S 96
+F N++ I F +P+AIQ +G GLD++ AQ+G+GKT ++
Sbjct: 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 89
Query: 97 GILQQLDYESLQC-QALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155
I Q E LVLAPTRELAQQ+++V +K GG R L
Sbjct: 90 HINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 149
Query: 156 SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215
GV + + TPGR+ D L VLDEAD ML GF+ QI I + Q
Sbjct: 150 ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 209
Query: 216 VGVFSATMPPEALEITRKFMNKPVRILV 243
++SAT P E ++ F+ + I +
Sbjct: 210 TLMWSATWPKEVRQLAEDFLKDYIHINI 237
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 6e-55
Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 8/210 (3%)
Query: 41 SF-DSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 99
F D+ +LL+ I G KP+ IQ + +G+D+I AQ+GTGKT ++
Sbjct: 20 RFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGF 79
Query: 100 QQLDYESLQCQ------ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR 153
LD + + + LVL PTRELA +E Y G+K GG +
Sbjct: 80 IHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIE 138
Query: 154 ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213
+S GV +++ TPGR+ D+ S+ I V+DEAD+ML F+ QI I +
Sbjct: 139 DISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPD 198
Query: 214 IQVGVFSATMPPEALEITRKFMNKPVRILV 243
Q + SAT P ++ ++ P+ + V
Sbjct: 199 RQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 1e-54
Identities = 60/209 (28%), Positives = 109/209 (52%), Gaps = 8/209 (3%)
Query: 41 SFDSMG--LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 98
SF S+ + EN L+ I GF + IQ + I P +G D++ A++G+GKT F
Sbjct: 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA 112
Query: 99 LQQLDYESLQCQ----ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154
++ + + L+L+PTRELA Q V++ L + +GG++ + +
Sbjct: 113 VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 172
Query: 155 LSAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213
L G++++V TPGR+ D ++ ++ V+DEAD +L GF++++ I + LP +
Sbjct: 173 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTR 232
Query: 214 IQVGVFSATMPPEALEITRK-FMNKPVRI 241
Q +FSAT + ++ R +P+ +
Sbjct: 233 RQTMLFSATQTRKVEDLARISLKKEPLYV 261
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-53
Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
Query: 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD 312
++ V +L+ L DL + ++++F T+ + + + + H A HGD
Sbjct: 6 YEEEAVPA-PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 313 MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 372
+ Q R+ ++ FR G RVL+ TD+ ARG+D+ QV LV++Y LP + E Y HR GR+GR
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 373 FGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406
GR G + + R + ++R + +
Sbjct: 125 AGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 158
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 5e-52
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
Query: 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD 312
++ V +L+ L DL + ++++F T+ + + + + H A HGD
Sbjct: 3 YEEEAVPA-PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 61
Query: 313 MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 372
M Q R+ +M FR G RVL+ TD+ ARG+D+ QV LV++Y +P + E Y HR GR+GR
Sbjct: 62 MSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGR 121
Query: 373 FGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406
GR G + + R + ++R + +
Sbjct: 122 AGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 155
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 5e-46
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 234 FMNKPVRILVKRDELTL-------EGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFV 286
+ + + + L + Q V KEE K+ L + + +IF
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGAASLDVIQ-EVEYVKEEAKMVYLLECLQKTP-PPVLIFA 61
Query: 287 NTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346
+ VD + + + + A HG DQ R + FR G VL+ TD+ ++G+D
Sbjct: 62 EKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFP 121
Query: 347 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392
+ VINYD+P + ENY+HRIGR+G G G+A F+ + D +
Sbjct: 122 AIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 8e-44
Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSV-IFVNTRRKVDWLTDQMRSRDHTVSATHG 311
I Q V V++ + K L DL +FV T++ D L D + + ++ HG
Sbjct: 20 ITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHG 78
Query: 312 DMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 371
D Q R+ + +FRSG S +L+ T + ARG+D+ V VIN+DLP+ E Y+HRIGR+G
Sbjct: 79 DRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 138
Query: 372 RFGRKGVAINFVTRDDDRMLAD 393
R G G+A +F + + D
Sbjct: 139 RVGNLGLATSFFNERNINITKD 160
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 21/209 (10%)
Query: 187 VLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246
L A E+L + + L + + G A+ + + +K ++
Sbjct: 281 KLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISL--------- 331
Query: 247 ELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD--- 303
L K+ ++ K + + + + + ++ ++F N R + +++
Sbjct: 332 ---LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKA 388
Query: 304 -----HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358
+ Q + +I+ EF G VL+ T + G+DV +V LV+ Y+
Sbjct: 389 KRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP 448
Query: 359 QPENYLHRIGRSGRFGRKGVAINFVTRDD 387
+ R GR+GR G I + +
Sbjct: 449 SAIRSIQRRGRTGR-HMPGRVIILMAKGT 476
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 4e-16
Identities = 51/339 (15%), Positives = 114/339 (33%), Gaps = 9/339 (2%)
Query: 68 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127
Q I CK + + +G GKT + ++ + + L+LAPT+ L Q +
Sbjct: 14 QEVIYAKCKETNCLIVLPTGLGKT--LIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAES 71
Query: 128 MRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187
R L + K+ A G S E + + V+V TP + + L + + + + V
Sbjct: 72 FRRLFNLPPEKIVALTGEKSPEERSKAWAR-AKVIVATPQTIENDLLAGRISLEDVSLIV 130
Query: 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE 247
DEA + I ++ V +A+ +I N + + R E
Sbjct: 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSE 190
Query: 248 LTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVS 307
+ + ++ + + E ++D E + + ++ + + + S D
Sbjct: 191 NSPD-VRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKK 249
Query: 308 ATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 367
+ II E G+ + A + + ++ + Y+ ++
Sbjct: 250 EVL-----RAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKL 304
Query: 368 GRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406
+ G + + + + + + P
Sbjct: 305 YEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHP 343
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 1e-16
Identities = 51/317 (16%), Positives = 90/317 (28%), Gaps = 65/317 (20%)
Query: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135
A +G+GK+ + + + LVL P+ M
Sbjct: 231 SFQVAHLHAPTGSGKST----KVPAAYAAQGYK--VLVLNPSVAATLGFGAYMSKA---H 281
Query: 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195
G+ + G R ++ G V T G+ L + + DE
Sbjct: 282 GIDPNIRTGV-------RTITTGAPVTYSTYGK---FLADGGCSGGAYDIIICDECHST- 330
Query: 196 SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ 255
I + V AT P +T N L E+ G
Sbjct: 331 DSTTILGIGTVLDQAETAGARLVVLATATPPG-SVTVPHPNIEEVALSNTGEIPFYGKA- 388
Query: 256 FHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315
+ E + + +IF ++++K D L ++ A + +D
Sbjct: 389 ----IPIEAIRGG------------RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLD- 431
Query: 316 NSRDIIMREFRSGSSRVLITTDLLARG--IDV-------QQVSLVINYD--------LPT 358
+ + V++ TD L G D V+ +++ T
Sbjct: 432 ------VSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTT 485
Query: 359 QP---ENYLHRIGRSGR 372
P + R GR+GR
Sbjct: 486 VPQDAVSRSQRRGRTGR 502
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 6e-14
Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 11/174 (6%)
Query: 245 RDELTLEGIKQFHVNVDKEEWKLDTLCD-LYETLAITQS---VIFVNTRRKVDWLTDQMR 300
RD L E I Q + W D + L L +S ++ L +R
Sbjct: 465 RDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLR 524
Query: 301 SR-DHTVSATHGDMDQNSRDIIMREFRSGSS--RVLITTDLLARGIDVQQVSLVINYDLP 357
R + H M RD F + +VL+ +++ + G + Q S ++ +DLP
Sbjct: 525 EREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLP 584
Query: 358 TQPENYLHRIGRSGRFGRKG--VAINFVTRD--DDRMLADIQRFYNVVIEELPA 407
P+ RIGR R G+ ++ + P
Sbjct: 585 FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT 638
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 7e-14
Identities = 62/412 (15%), Positives = 135/412 (32%), Gaps = 89/412 (21%)
Query: 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE 105
+ + + G E+ Q + G +++ + GKT ++++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 106 SLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGT 165
++L + P R LA + + + G+++ G D+ + ++V T
Sbjct: 69 G---KSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYES-RDEHLGDC--DIIVTT 121
Query: 166 PGRVFDMLRRQSLRPDYIRMFVLDE----ADE--------MLSRGFKDQIYDIFQHLPGK 213
+ ++R ++ + V+DE E ++++ + +
Sbjct: 122 SEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK---------MRRMNKA 172
Query: 214 IQ-VGVFSATMP-PEALEITRKFMNKPVRILVKRD----ELTLEGIKQFHVNVDKEEWKL 267
++ +G+ SAT P + ++++ D L EG+ +
Sbjct: 173 LRVIGL-SATAPNVTEIA---EWLDAD---YYVSDWRPVPLV-EGVLCEGTLELFDGAFS 224
Query: 268 DTLCDLYETLAIT------QSVIFVNTRRKV----------------------DWLTDQM 299
+ +E L ++F +TRR L +
Sbjct: 225 TSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENE 284
Query: 300 RSRDHTVSAT--------HGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 351
++ H + R ++ FR G+ +V++ T LA G+++ V
Sbjct: 285 GEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL-PARRV 343
Query: 352 INYDL--------PTQPENYLHRIGRSGRFG--RKGVAINFVTRDDDRMLAD 393
I L + Y GR+GR G +G AI V + D +
Sbjct: 344 IVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 395
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 76/410 (18%), Positives = 149/410 (36%), Gaps = 78/410 (19%)
Query: 43 DSMGLKENLLRGIYAYGFEKPSAIQQRGI-VPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101
D + + E + + G E Q + +G + + + +GKT ++ +
Sbjct: 4 DELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHR 63
Query: 102 LDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHV 161
+ + +A+ + P + LA++ + + G++V G +++ +
Sbjct: 64 I--LTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVAMATGDYDSKDEWL---GKYDI 117
Query: 162 VVGTPGRVFDMLRRQSLRPDYIRMFVLDE----ADEMLSRGFKDQIYDIFQHLPGKIQ-V 216
++ T + +LR S +++ V DE RG + I H+ GK Q +
Sbjct: 118 IIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSR--DRG--ATLEVILAHMLGKAQII 173
Query: 217 GVFSATMP-PEALEITRKFMNKPVRILVKRD----ELTLEGIK--QFHVNVDKEEWKLDT 269
G+ SAT+ PE L +++N L+ D +L G+ F D + +
Sbjct: 174 GL-SATIGNPEELA---EWLNAE---LIVSDWRPVKLR-RGVFYQGFVTWEDGSIDRFSS 225
Query: 270 LCDL-YETLA-ITQSVIFVNTRR--------------------KVDWLTDQMRSRDHTVS 307
+L Y+ + ++IFVN RR ++ L + S + +
Sbjct: 226 WEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285
Query: 308 AT-------------HGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI-- 352
H + ++ R ++ FR G + ++ T L+ GI+ VI
Sbjct: 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINT-PAFRVIIR 344
Query: 353 ---NYDLPTQPE----NYLHRIGRSGRFG--RKGVAINFVTRDDDRMLAD 393
Y +GR+GR G I T DD R + +
Sbjct: 345 DIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMN 394
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 63.5 bits (153), Expect = 6e-11
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 19/177 (10%)
Query: 229 EITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL----YETLAITQSVI 284
+ ++ + L +R E L+ ++ + E KL+ LC + Y T +++
Sbjct: 344 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403
Query: 285 FVNTRRKVDWLTDQMRSRD------------HTVSATHGDMDQNSRDIIMREFR-SGSSR 331
FV TR VD L + + + + M ++ I+ F+ SG
Sbjct: 404 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 463
Query: 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388
+LI T + GID+ Q +LVI Y+ + GR R +
Sbjct: 464 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA--RGSKCFLLTSNAGV 518
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 50.4 bits (119), Expect = 8e-07
Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 8/202 (3%)
Query: 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD--YESLQCQALVLAPTRE 119
KP Q +P KG + I A +G GKT L + + + + A
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 72
Query: 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLR 179
+ +Q + V + G +V G T+ + +++ TP + + L++ ++
Sbjct: 73 VYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 132
Query: 180 P-DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKP 238
+ + DE + + I + Q S+ P+ + +T
Sbjct: 133 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLD-----QKLGGSSGPLPQVIGLTASVGVGD 187
Query: 239 VRILVKRDELTLEGIKQFHVNV 260
+ + + + +V
Sbjct: 188 AKTTDEALDYICKLCASLDASV 209
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 61.5 bits (148), Expect = 2e-10
Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 19/177 (10%)
Query: 229 EITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL----YETLAITQSVI 284
+ + + L + + + + E KL+ L + Y T++++
Sbjct: 577 NVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636
Query: 285 FVNTRRKVDWLTDQMRS------------RDHTVSATHGDMDQNSRDIIMREFRSGSS-R 331
F TR V L M M S+ ++ F++ R
Sbjct: 637 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696
Query: 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388
+LI T + GID+ Q +LV+ Y+ + GR GR I ++ +
Sbjct: 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR-AAGSKCILVTSKTEV 751
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 1e-04
Identities = 49/370 (13%), Positives = 114/370 (30%), Gaps = 21/370 (5%)
Query: 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD--YESLQCQALVLA 115
Y +K + Q P G + + A +G+GKT + + + LA
Sbjct: 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303
Query: 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR 175
+ +Q + V + + G V G + ++V TP + +
Sbjct: 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 363
Query: 176 QSLRP-DYIRMFVLDEADEMLS--------RGFKDQIYDIFQHLPGKIQVGVFSATMPPE 226
+L + + DE + +Q ++ LP + + +
Sbjct: 364 GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAK 423
Query: 227 ALEITRKFM-----NKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL---A 278
+E T + + ++ + E E + + + + + +
Sbjct: 424 NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483
Query: 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHG-DMDQNSRDIIMREFRSGSSRVLITTD 337
++++ + T VD L+ + T + H + Q ++ E + SR+
Sbjct: 484 MSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 543
Query: 338 LLARGIDVQQVSLVINYDLPTQPE-NYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQR 396
+ + +L+I+ D +YL + + G +T ++
Sbjct: 544 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIA 603
Query: 397 FYNVVIEELP 406
E P
Sbjct: 604 LSKDETNENP 613
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 4e-10
Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 15/169 (8%)
Query: 233 KFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 292
+ +++ + K K E + L D Y T++++F TR V
Sbjct: 344 ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403
Query: 293 DWLTDQMRS------------RDHTVSATHGDMDQNSRDIIMREFRSGSS-RVLITTDLL 339
L M M S+ ++ F++ R+LI T +
Sbjct: 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA 463
Query: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388
GID+ Q +LV+ Y+ + GR GR I ++ +
Sbjct: 464 DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR-AAGSKCILVTSKTEV 510
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 5e-06
Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 21/366 (5%)
Query: 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKT--ATFCSGILQQLDYESLQCQALVLAPTRE 119
K + Q P G + + A +G+GKT + Q + + + LA
Sbjct: 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVP 66
Query: 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLR 179
+ +Q + V + + G V G + ++V TP + + +L
Sbjct: 67 VYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLT 126
Query: 180 P-DYIRMFVLDEADEMLS--------RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEI 230
+ + DE + +Q ++ LP + + + +E
Sbjct: 127 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 186
Query: 231 TRKFM-----NKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL---AITQS 282
T + + ++ + E E + + + + + + ++++
Sbjct: 187 TIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSET 246
Query: 283 VIFVNTRRKVDWLTDQMRSRDHTVSATHG-DMDQNSRDIIMREFRSGSSRVLITTDLLAR 341
+ T VD L+ + T + H + Q ++ E + SR+ +
Sbjct: 247 EALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTE 306
Query: 342 GIDVQQVSLVINYDLPTQPE-NYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNV 400
+ +L+I+ D +YL + + G +T ++
Sbjct: 307 HLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKD 366
Query: 401 VIEELP 406
E P
Sbjct: 367 ETNENP 372
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 60.8 bits (146), Expect = 4e-10
Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 19/177 (10%)
Query: 229 EITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL----YETLAITQSVI 284
+ + + L + + + + E KL+ L + Y T++++
Sbjct: 577 NVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636
Query: 285 FVNTRRKVDWLTDQMRS------------RDHTVSATHGDMDQNSRDIIMREFRSGSS-R 331
F TR V L M M S+ ++ F++ R
Sbjct: 637 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696
Query: 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388
+LI T + GID+ Q +LV+ Y+ + GR GR I ++ +
Sbjct: 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR-AAGSKCILVTSKTEV 751
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 50.4 bits (119), Expect = 8e-07
Identities = 49/371 (13%), Positives = 116/371 (31%), Gaps = 23/371 (6%)
Query: 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKT--ATFCSGILQQLDYESLQCQALVLA 115
Y +K + Q P G + + A +G+GKT + Q + + + LA
Sbjct: 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303
Query: 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR 175
+ +Q + V + + G V G + ++V TP + +
Sbjct: 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 363
Query: 176 QSLRP-DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF-----SATMPPEALE 229
+L + + DE + + + + +A++ +
Sbjct: 364 GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAK 423
Query: 230 ITRKFMNKPVRILVKRDELTLEGIK------QFHVNVDKEEWKL------DTLCDLYETL 277
+ + + D + ++ Q +N + + +L + + L
Sbjct: 424 NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483
Query: 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHG-DMDQNSRDIIMREFRSGSSRVLITT 336
++++ + T VD L+ + T + H + Q ++ E + SR+
Sbjct: 484 -MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRAL 542
Query: 337 DLLARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQ 395
+ + +L+I+ D +YL + + G +T ++
Sbjct: 543 FICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELI 602
Query: 396 RFYNVVIEELP 406
E P
Sbjct: 603 ALSKDETNENP 613
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 49/322 (15%), Positives = 100/322 (31%), Gaps = 62/322 (19%)
Query: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQC--QALVLAPTRELAQQIEKVMRALGD 133
KG+ + G GKT L Q+ E + + LVLAPTR + ++++
Sbjct: 7 KGMTTVLDFHPGAGKT----RRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH---- 58
Query: 134 YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMF---VLDE 190
G+ V S R + + L + L P + + ++DE
Sbjct: 59 --GLDVKFHTQAFSAHGSGREV-----IDAMCHA----TLTYRMLEPTRVVNWEVIIMDE 107
Query: 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTL 250
A + + + + + + +AT P + E F + I + ++
Sbjct: 108 AHFLDPASIAARGWAAHRARANESATILMTATPPGTSDE----FPHSNGEIEDVQTDIPS 163
Query: 251 EGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATH 310
E H + ++ F+ + R + + +R +V +
Sbjct: 164 EPWNTGHDWILADKRPT---------------AWFLPSIRAANVMAASLRKAGKSVVVLN 208
Query: 311 GDMDQNSRDIIMREFRSGSSRVLITTDLLARG--IDVQQV-----SLVINYD-------- 355
+ R+ + ++ TD+ G + V++V +
Sbjct: 209 RKTFE--REY--PTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAI 264
Query: 356 LPTQPENYLHRIGRSGRFGRKG 377
+ R GR GR
Sbjct: 265 KGPLRISASSAAQRRGRIGRNP 286
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 2e-09
Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 19/178 (10%)
Query: 229 EITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL----YETLAITQSVI 284
++ ++ R L +R E LE +++ + E KL L + Y T++++
Sbjct: 335 DVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394
Query: 285 FVNTRRKVD----WLTDQMRSRD--------HTVSATHGDMDQNSRDIIMREFR-SGSSR 331
FV TR VD W+ + + M ++ ++ FR SG +
Sbjct: 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN 454
Query: 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389
+LI T + GID+ + +LVI Y+ + GR GR R + D
Sbjct: 455 ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GR-ARDSKCFLLTSSADVI 510
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 3e-06
Identities = 34/274 (12%), Positives = 83/274 (30%), Gaps = 22/274 (8%)
Query: 67 QQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD--YESLQCQALVLAPTRELAQQI 124
Q +P KG + I A +G GKT L + + + A + +Q
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQ 68
Query: 125 EKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRP-DYI 183
V + +G + + G TS + + +++ TP + + L ++
Sbjct: 69 ATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVF 128
Query: 184 RMFVLDEADEMLSRGFKDQIYDIFQHLPGK------IQVGVFSATMPPEALEITRKFMNK 237
+ + DE +QI + QV +A++ + + M
Sbjct: 129 TLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQH 188
Query: 238 PVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTD 297
++ D + ++ +++ +K + + R +
Sbjct: 189 ICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVAS-------------RTSNTFKC 235
Query: 298 QMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR 331
+ D+ + + + R ++
Sbjct: 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQ 269
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 1e-08
Identities = 56/432 (12%), Positives = 127/432 (29%), Gaps = 112/432 (25%)
Query: 8 GSGFDARSFDSNMNNLLSEEGQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQ 67
+ + + LL + ++ D + + + LR + ++
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----------LK 239
Query: 68 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127
+ P+ L V+ Q+ + + L C+ L+ TR ++V
Sbjct: 240 SK---PYENCLLVLLNVQN---------AKAWNAFN---LSCKILLT--TRF-----KQV 277
Query: 128 MRALGDYMGVKV---HACVGGTSVREDQRILSAGVH---------VVVGTP---GRVFDM 172
L + H + T E + +L + V+ P + +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 173 LRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF--SATMPPEALEI 230
+R D + D+ ++ ++ + ++ VF SA +P L +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSVFPPSAHIPTILLSL 394
Query: 231 ---------TRKFMNKPVRI-LVKRD--ELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA 278
+NK + LV++ E T+ I + L+ L A
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIY---------LELKVKLENEYA 444
Query: 279 ITQSVI-FVNTRRKVDWLTDQMRSRD---------HTVSATHGDMDQNSRDIIMREFRSG 328
+ +S++ N + D D H + H + R + + +FR
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFR-- 501
Query: 329 SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD- 387
+ + ++ + Q + Y ++ +D
Sbjct: 502 ----FLEQKIRHDSTAWNASGSIL--NTLQQLKFYK----------------PYICDNDP 539
Query: 388 --DRMLADIQRF 397
+R++ I F
Sbjct: 540 KYERLVNAILDF 551
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 55/349 (15%), Positives = 101/349 (28%), Gaps = 79/349 (22%)
Query: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQC--QALVLAPTRELAQQIEKVMRALGD 133
K I G GKT IL + E+L + L+LAPTR +A ++E+ +R L
Sbjct: 18 KKRLTIMDLHPGAGKTK----RILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLP- 72
Query: 134 YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIR---MFVLDE 190
+ + + V + + L + + V+DE
Sbjct: 73 ---------IRYQTPAVKSDH-TGREIVDLMCHA----TFTTRLLSSTRVPNYNLIVMDE 118
Query: 191 A-----DEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR 245
A + +RG+ + G+ +AT P N P+ + +
Sbjct: 119 AHFTDPCSVAARGYIST-----RVEMGEAAAIFMTAT--PPGSTDPFPQSNSPIEDIERE 171
Query: 246 DELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT 305
+ +++ T+ FV + + + + + +R
Sbjct: 172 IPERSWNTGFDWI----TDYQGKTV-------------WFVPSIKAGNDIANCLRKSGKR 214
Query: 306 VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG--IDV-------QQVSLVINYD- 355
V + + ++TTD+ G + + VI D
Sbjct: 215 VIQLSRKTFDT----EYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDG 270
Query: 356 ------LPTQPENYLHRIGRSGRFGR--KGVAINFV----TRDDDRMLA 392
P R GR GR +V +D A
Sbjct: 271 PERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHA 319
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 49/326 (15%), Positives = 90/326 (27%), Gaps = 73/326 (22%)
Query: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQC--QALVLAPTRELAQQIEKVMRALGD 133
K I G GKT IL + E+L+ + L+LAPTR +A
Sbjct: 185 KKRLTIMDLHPGAGKT----KRILPSIVREALKRRLRTLILAPTRVVA-----------A 229
Query: 134 YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIR---MFVLDE 190
M + + + V + + L + + V+DE
Sbjct: 230 EMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHA----TFTTRLLSSTRVPNYNLIVMDE 285
Query: 191 -----ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR 245
+ +RG+ + G+ +AT P N P+ + +
Sbjct: 286 AHFTDPCSVAARGYIST-----RVEMGEAAAIFMTAT--PPGSTDPFPQSNSPIEDIERE 338
Query: 246 DELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT 305
+ +++ T+ FV + + + + + +R
Sbjct: 339 IPERSWNTGFDWI----TDYQGKTV-------------WFVPSIKAGNDIANCLRKSGKR 381
Query: 306 VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG--IDV-------QQVSLVINYD- 355
V + + ++TTD+ G + + VI D
Sbjct: 382 VIQLSRKTFDT----EYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDG 437
Query: 356 ------LPTQPENYLHRIGRSGRFGR 375
P R GR GR
Sbjct: 438 PERVILAGPIPVTPASAAQRRGRIGR 463
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 3e-07
Identities = 52/325 (16%), Positives = 96/325 (29%), Gaps = 64/325 (19%)
Query: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQC--QALVLAPTRELAQQIEKVMRALGD 133
K + G GKT +L QL E+++ + ++LAPTR +A ++ AL
Sbjct: 1 KRELTVLDLHPGAGKT-R---RVLPQLVREAVKKRLRTVILAPTRVVA---SEMYEALRG 53
Query: 134 YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEA-- 191
+ + + V L + P+Y ++++DEA
Sbjct: 54 EP-------IRYMTPAVQSER-TGNEIVDFMCHSTFTMKLLQGVRVPNY-NLYIMDEAHF 104
Query: 192 ---DEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL 248
+ +RG+ + + G +AT P P DE
Sbjct: 105 LDPASVAARGYIET-----RVSMGDAGAIFMTATPPGTTEAF-------PPSNSPIIDE- 151
Query: 249 TLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSA 308
E EW + V FV++ ++ + ++ V
Sbjct: 152 --ETRIPDKAWNSGYEWITEFDGRT---------VWFVHSIKQGAEIGTCLQKAGKKVLY 200
Query: 309 THGDMDQNSRDIIMREFRSGSSRVLITTDLLARG--IDVQQV----SLVINYD------- 355
+ ++ + +S +ITTD+ G +V +
Sbjct: 201 LNRKTFES----EYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSM 256
Query: 356 LPTQPENYLHRIGRSGRFGRKGVAI 380
R GR GR +
Sbjct: 257 QGPIAITPASAAQRRGRIGRNPEKL 281
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 4e-07
Identities = 57/318 (17%), Positives = 89/318 (27%), Gaps = 57/318 (17%)
Query: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQC--QALVLAPTRELAQQIEKVMRALGD 133
K + G GKT IL Q+ +++Q + VLAPTR +
Sbjct: 240 KRQLTVLDLHPGAGKT-R---RILPQIIKDAIQKRLRTAVLAPTR-----------VVAA 284
Query: 134 YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193
M + QR S V V + L P+Y +FV+DEA
Sbjct: 285 EMAEALRGLPVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNY-NLFVMDEAHF 343
Query: 194 MLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGI 253
+ Y + G+ +AT P + N PV +
Sbjct: 344 TDPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD--TNSPVHDVSSEIP------ 395
Query: 254 KQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDM 313
EW D V FV + + + + ++ V +
Sbjct: 396 --DRAWSSGFEWITDYAGKT---------VWFVASVKMSNEIAQCLQRAGKRVIQLNRKS 444
Query: 314 DQNSRDIIMREFRSGSSRVLITTDLLARG--IDV-------QQVSLVINYD-------LP 357
+ ++G +ITTD+ G + V I +
Sbjct: 445 YDT----EYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKSVKPTILDEGEGRVILSV 500
Query: 358 TQPENYLHRIGRSGRFGR 375
R GR GR
Sbjct: 501 PSAITSASAAQRRGRVGR 518
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-07
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 87 GTGKT---ATFCSGILQQLDYESLQCQALVLAPTRELA-QQIEKVMRALGDYMGVKVHAC 142
G+GKT L + S + +VL L Q K + +V
Sbjct: 58 GSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWY-RVIGL 116
Query: 143 VGGTSVREDQRILSAGVHVVVGTPGRVFDML------RRQSLRPDYIRMFVLDEA 191
G T ++ + +++ T + + L ++ + ++DE
Sbjct: 117 SGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 171
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Length = 591 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 283 VIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA-- 340
+I+ +++ + +T +++ A H +++ + + R++ + +V++ T +A
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT--VAFG 328
Query: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI 380
GID V VI++ + ENY GR+GR K I
Sbjct: 329 MGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI 368
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 72/434 (16%), Positives = 140/434 (32%), Gaps = 100/434 (23%)
Query: 43 DSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQ 101
+ + L N++ I G +K + Q + +G ++ + +G+GKT GI+
Sbjct: 11 EDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISF 70
Query: 102 LDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHV 161
L + A+ + P R L + + G KV G + +
Sbjct: 71 LLKNGGK--AIYVTPLRALTNEKYLTFKDWELI-GFKVAMTSGDYDTDDAWL---KNYDI 124
Query: 162 VVGTPGRVFDMLRRQSLRPDYIRMFVLDE----ADE--------MLSRGFKDQIYDIFQH 209
++ T ++ + R + + + FVLDE D + R + +
Sbjct: 125 IITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL------ 178
Query: 210 LPGKIQVGVFSATMP-PEALEITRKFMNK--------PVRI---LVKRDELTLEGIKQFH 257
+ + SAT+ + + K++ PV + ++ + E F
Sbjct: 179 ------LAL-SATISNYKQIA---KWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFK 228
Query: 258 VNVDKEEWKLDTLCDL-YETLAITQSV-IFVNTRR---------------------KVDW 294
N K+ D + ++L+ V +F N+R+ +
Sbjct: 229 DNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSE 288
Query: 295 LTDQMRSRDHTVSAT---------------HGDMDQNSRDIIMREFRSGSSRVLITTDLL 339
+ Q+ + S H + + RD+I FR +V++ T L
Sbjct: 289 ILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTL 348
Query: 340 A------------RGIDVQQVSLVINYDLPTQPENYLHRIGRSGR--FGRKGVAINFVTR 385
A I + YD Y GR+GR F + G +I V
Sbjct: 349 AAGVNLPARTVIIGDIYRFNKKIAGYYD-EIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407
Query: 386 DDDRMLADIQRFYN 399
+D + +
Sbjct: 408 KEDVDRVFKKYVLS 421
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Length = 523 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 26/98 (26%), Positives = 53/98 (54%)
Query: 283 VIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342
+I+ N+R KV+ +++S+ + +A H ++ N R + +F+ ++++ T G
Sbjct: 240 IIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMG 299
Query: 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI 380
I+ V V+++D+P E+Y GR+GR G A+
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 4e-06
Identities = 48/341 (14%), Positives = 101/341 (29%), Gaps = 42/341 (12%)
Query: 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121
+P Q+ + I + G++ L+ + + L++ PT L
Sbjct: 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALT 170
Query: 122 QQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPD 181
Q+ + + GG S + + VVVGT +
Sbjct: 171 TQMADDFVDYRLFSHAMIKKIGGGASKDDKYKN---DAPVVVGT------WQTVVKQPKE 221
Query: 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMN-KPVR 240
+ F + DE I I L + S ++ I + +
Sbjct: 222 WFSQFGMMMNDECH-LATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIF 280
Query: 241 ILVKRDELTLEG---------IKQFHVNVDKEEWKLDTLCDLYETLAITQ---------- 281
V +L +G I + + + K T + + +
Sbjct: 281 KPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLA 340
Query: 282 ---------SVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332
+ + + D +++ V G++D +R+I+ +G +
Sbjct: 341 IKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGII 400
Query: 333 LITT-DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 372
++ + + + GI V+ + V+ L IGR R
Sbjct: 401 IVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLR 441
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 47/326 (14%), Positives = 97/326 (29%), Gaps = 86/326 (26%)
Query: 87 GTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGT 146
G+GKT + I + L L++ PT LA+Q ++ + G+ + G
Sbjct: 118 GSGKTHVAMAAINE------LSTPTLIVVPTLALAEQWKERLGIFGE----EYVGEFSGR 167
Query: 147 SVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDI 206
+ V T + + R + + DE + + + I
Sbjct: 168 IKELKP--------LTVSTYDSAYVNAEKLGNRFMLL---IFDEVHHLPAESYV----QI 212
Query: 207 FQHLPGKIQVGVFSATMP--------------PEALEITRKFMNK----PVRILVKRDEL 248
Q ++G +AT + E+ + I L
Sbjct: 213 AQMSIAPFRLG-LTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPL 271
Query: 249 T-------LEGIKQFHVNVDKEEWKLDTLCDLYETLAIT---------------QSVIFV 286
+ K + + L D + + + I
Sbjct: 272 AEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAF 331
Query: 287 NTRRKVDWLTDQMR--------------------SRDHTVSATHGDMDQNSRDIIMREFR 326
N++ K+ L + + S+ + A + R+ I+ FR
Sbjct: 332 NSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFR 391
Query: 327 SGSSRVLITTDLLARGIDVQQVSLVI 352
+G R ++++ +L GIDV ++ +
Sbjct: 392 TGRFRAIVSSQVLDEGIDVPDANVGV 417
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 58/314 (18%), Positives = 94/314 (29%), Gaps = 57/314 (18%)
Query: 80 VIQQAQSGTGKTATFCSGILQQLDYESLQC--QALVLAPTRELAQQIEKVMRALGDYMGV 137
+ G+GKT IL Q+ +++Q + VLAPTR +A ++ AL G+
Sbjct: 24 TVLDLHPGSGKT----RKILPQIIKDAIQQRLRTAVLAPTRVVA---AEMAEALR---GL 73
Query: 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197
V QR V V + L + P+Y +FV+DEA
Sbjct: 74 PV-----RYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNY-NLFVMDEAHFTDPA 127
Query: 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH 257
+ Y + G+ +AT P P D +
Sbjct: 128 SIAARGYIATKVELGEAAAIFMTATPPGTTDPF-------PDSNAPIHDL---QDEIPDR 177
Query: 258 VNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNS 317
EW + V FV + + + + ++ V +
Sbjct: 178 AWSSGYEWITEYAGKT---------VWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDT- 227
Query: 318 RDIIMREFRSGSSRVLITTDLLARG--IDV-------QQVSLVINYD-------LPTQPE 361
+ ++G +ITTD+ G + V I + P
Sbjct: 228 ---EYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKSVKPTILEEGEGRVILGNPSPI 284
Query: 362 NYLHRIGRSGRFGR 375
R GR GR
Sbjct: 285 TSASAAQRRGRVGR 298
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 2e-04
Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 20/187 (10%)
Query: 235 MNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDW 294
V L+ +E + L L V F ++ +
Sbjct: 280 AIDLVMELMYTTGEEVEVRDYKRLT--PISVLDHALESLDNLRPGDCIVCF--SKNDIYS 335
Query: 295 LTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV--LITTDLLARGIDVQQVSLVI 352
++ Q+ R + +G + ++ ++F + L+ TD + G+++ ++
Sbjct: 336 VSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIF 395
Query: 353 N----YDLPTQPENYLHRI---------GRSGRFGRKGVAINFVTRDDDRMLADIQRFYN 399
+ + E L I GR+GRF + VT + L+ ++
Sbjct: 396 YSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRF-KEGEVTTMNHEDLSLLKEILK 454
Query: 400 VVIEELP 406
++ +
Sbjct: 455 RPVDPIR 461
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 49/331 (14%), Positives = 92/331 (27%), Gaps = 81/331 (24%)
Query: 87 GTGKTATFCSGILQQLDYESLQCQA------LVLAPTRELAQQIEKVMRALGDYMGVKVH 140
GTGKT + + L LA L
Sbjct: 208 GTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDD------PKDKTFTPFGD 261
Query: 141 ACVG--GTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198
A G V + + I A + R + D+ + ++DE RG
Sbjct: 262 ARHKIEGGKVVKSREIYFAIYQSIASDERRPGLY---KEFPQDFFDLIIIDEC----HRG 314
Query: 199 FKDQIY---DIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPV---------------- 239
+I ++ Q+G +AT E T ++ P+
Sbjct: 315 SARDNSNWREILEYFEPAFQIG-MTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAP 373
Query: 240 -RILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKV-DWLTD 297
R+ E+ G + +VD+ ++ Y+T + + LTD
Sbjct: 374 YRVHRVISEVDAAGWRPSKGDVDRFGREIPD--GEYQTKDFERVIALKARTDAFAKHLTD 431
Query: 298 QMR-------------SRDH---------------------TVSATHGDMDQNSRDII-- 321
M+ ++H V+ + + + +
Sbjct: 432 FMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSR 491
Query: 322 MREFRSGSSRVLITTDLLARGIDVQQVSLVI 352
+E + + +L T+ LL G+D V+
Sbjct: 492 FQELETSTPVILTTSQLLTTGVDAPTCKNVV 522
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 100.0 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 100.0 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 100.0 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 100.0 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 100.0 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 100.0 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 100.0 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 100.0 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 100.0 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 100.0 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 100.0 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 100.0 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 100.0 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 100.0 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 100.0 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.96 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.96 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.96 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.96 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.96 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.95 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.95 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.95 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.95 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.94 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.93 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.87 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.92 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.91 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.91 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.88 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.86 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.85 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.85 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.76 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.86 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 98.6 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 98.53 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 98.52 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 98.52 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 98.49 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 98.44 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 98.44 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 98.01 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 97.74 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 97.69 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 97.5 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 97.43 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 97.42 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 97.31 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.29 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 97.29 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.26 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 97.24 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.21 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 97.1 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 97.1 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 97.04 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.03 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.86 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.84 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 96.83 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.83 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.82 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.79 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 96.73 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.73 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.53 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.53 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 96.5 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 96.47 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.39 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.37 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.32 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.29 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 96.25 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.22 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.2 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 95.96 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.9 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 95.88 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.86 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 95.86 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 95.83 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.8 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.68 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 95.64 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.61 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.51 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.41 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.32 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 95.23 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.19 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 95.01 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 94.89 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 94.88 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 94.84 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.81 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 94.8 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.78 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 94.74 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 94.73 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 94.66 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 94.62 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 94.58 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 94.45 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 94.44 | |
| 3hjh_A | 483 | Transcription-repair-coupling factor; MFD, mutatio | 94.23 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 94.2 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 94.17 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 93.96 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 93.77 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 93.18 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 93.08 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 91.93 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 91.67 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 91.52 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 91.51 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 91.13 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 91.05 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 91.0 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 90.88 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 90.49 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 90.45 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 90.23 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 90.02 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 89.92 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 89.81 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 89.7 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 89.57 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 89.2 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 89.02 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 88.95 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 88.8 | |
| 1w36_B | 1180 | RECB, exodeoxyribonuclease V beta chain; recombina | 88.37 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 88.36 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 88.16 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 88.05 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 87.99 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 87.99 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 87.95 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 87.93 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 87.81 | |
| 3u4q_B | 1166 | ATP-dependent helicase/deoxyribonuclease subunit; | 87.79 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 87.77 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 87.75 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 87.7 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 87.6 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 87.6 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 87.52 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 87.49 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 87.46 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 87.24 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 87.11 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 86.99 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 86.95 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 86.86 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 86.85 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 86.76 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 86.76 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 86.72 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 86.27 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 86.25 | |
| 2l8b_A | 189 | Protein TRAI, DNA helicase I; RECD, hydrolase; NMR | 86.1 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 86.06 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 85.9 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 85.72 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 85.69 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 85.67 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 85.67 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 85.54 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 85.53 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 85.48 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 85.42 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 85.42 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 85.35 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 85.3 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 85.29 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 85.18 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 85.13 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 85.13 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 85.03 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 84.85 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 84.8 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 84.78 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 84.55 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 84.52 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 84.38 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 84.31 | |
| 2l82_A | 162 | Designed protein OR32; structural genomics, northe | 84.23 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 84.15 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 84.12 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 84.01 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 83.93 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 83.91 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 83.75 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 83.5 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 83.48 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 83.34 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 83.31 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 83.2 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 83.18 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 83.18 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 83.06 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 83.05 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 83.04 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 82.94 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 82.89 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 82.75 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 82.75 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 82.65 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 82.5 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 82.48 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 82.23 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 82.12 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 82.09 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 82.07 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 82.05 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 81.85 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 81.78 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 81.75 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 81.49 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 81.41 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 81.27 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 81.2 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 81.17 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 81.13 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 81.06 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 80.95 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 80.93 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 80.85 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 80.85 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 80.67 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 80.66 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 80.45 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 80.08 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-61 Score=452.23 Aligned_cols=374 Identities=32% Similarity=0.525 Sum_probs=338.2
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-----CceeE
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-----LQCQA 111 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-----~~~~~ 111 (413)
.+..+|+.+++++.+.+.+...||..|+++|.++++.+++|+++++++|||||||++|+++++..+.... .++++
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 3467899999999999999999999999999999999999999999999999999999999998875432 35689
Q ss_pred EEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccc
Q 015093 112 LVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 112 lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 191 (413)
||++|+++|+.|+++++++++...++++..++|+.....+......+++|+|+||++|.+.+.+....+.+++++|+|||
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEa 212 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEA 212 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETH
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccH
Confidence 99999999999999999999988888999999999887777777778999999999999999988888889999999999
Q ss_pred hhhhccCcHHHHHHHHhhC--CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHH
Q 015093 192 DEMLSRGFKDQIYDIFQHL--PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~--~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
|++.+.++...+..++..+ +...+++++|||+++....+...++.++..+...........+.+....... ..+...
T Consensus 213 h~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~ 291 (434)
T 2db3_A 213 DRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK-YAKRSK 291 (434)
T ss_dssp HHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG-GGHHHH
T ss_pred hhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc-HHHHHH
Confidence 9999999999999998875 5678999999999999999999999988888777666666677777666554 557788
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCC
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~ 349 (413)
+..++..... ++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 292 l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 292 LIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 8888887654 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEec-cccHHHHHHHHHHhccccccCCcchhcc
Q 015093 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT-RDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 350 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
+||+++.|.+..+|+||+||+||.|+.|.+++|++ ..+......+.+.+....+.+|.+|.++
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999999 4577888999999999999999998764
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-61 Score=451.16 Aligned_cols=377 Identities=67% Similarity=1.065 Sum_probs=350.0
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+...+|+.+++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 34578999999999999999999999999999999999999999999999999999999999998865555679999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
+++|+.|+.+.+++++...++.+....|+.....+......+++|+|+||+.|...+.........+++||+||||++.+
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh
Confidence 99999999999999998889999999999887777666667789999999999999988878888899999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
.++...+..++..++...+++++|||+++........++..+..+...........+.+.+........+...+..++..
T Consensus 194 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 273 (410)
T 2j0s_A 194 KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 273 (410)
T ss_dssp TTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHh
Confidence 98999999999999989999999999998887778888888888777777777788888888888777789999999988
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
...+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 274 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
|.+...|.||+||+||.|++|.|++++++.+...++.+.++++..++++|.+..+++
T Consensus 354 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 354 PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 999999999999999999999999999999999999999999999999999887764
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-61 Score=451.15 Aligned_cols=385 Identities=72% Similarity=1.122 Sum_probs=337.0
Q ss_pred CcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCc
Q 015093 29 QDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQ 108 (413)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~ 108 (413)
......+.+...+|+.+++++.+.+.+...++..|+++|.++++.+.+++++++.+|||+|||+++++++++.+.....+
T Consensus 29 ~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~ 108 (414)
T 3eiq_A 29 GVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKA 108 (414)
T ss_dssp -CCCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCS
T ss_pred cccCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCc
Confidence 34455677788999999999999999999999999999999999999999999999999999999999999988766566
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
.+++|++|+++|+.|+.+.+++++...+..+....|+........... ..++|+|+||+.|.+.+........++++||
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 188 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEE
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEE
Confidence 789999999999999999999999888899999998887666554443 6789999999999999988887788899999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||||++.+.++...+..++..++.+.+++++|||+++........++..+..+...........+.+.+........+.
T Consensus 189 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 189 LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKL 268 (414)
T ss_dssp ECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHH
T ss_pred EECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHH
Confidence 99999999888999999999999999999999999999988888999999988888777778888888888888878899
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
..+..++.....+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 269 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 348 (414)
T 3eiq_A 269 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ 348 (414)
T ss_dssp HHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGG
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccC
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
+++||+++.|.|...|.||+||+||.|++|.|++++++.+...+..+.++++..++.+|.++.+||
T Consensus 349 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 349 VSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp CSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred CCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999886
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=436.51 Aligned_cols=375 Identities=34% Similarity=0.522 Sum_probs=331.8
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc----------
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---------- 106 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---------- 106 (413)
.+..+|+++++++.+.+.+...|+..|+++|.++++.+..++++++.+|||+|||++++++++..+....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 4457799999999999999999999999999999999999999999999999999999999988764432
Q ss_pred --------CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC
Q 015093 107 --------LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL 178 (413)
Q Consensus 107 --------~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~ 178 (413)
.+++++|++|+++|+.|+++.++++....++.+..++|+.........+..+++|+|+||+.|...+.....
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 225799999999999999999999988888999999999887777666777889999999999999988877
Q ss_pred CCCCccEEEEccchhhhccCcHHHHHHHHhh--CCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCce
Q 015093 179 RPDYIRMFVLDEADEMLSRGFKDQIYDIFQH--LPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIK 254 (413)
Q Consensus 179 ~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~--~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (413)
.+.++++||+||||++.+.++...+..++.. .+. ..+++++|||+++........++..+..+...........+.
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 251 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEE
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCce
Confidence 7888999999999999988899999888874 332 578999999999888888888998888777666555666666
Q ss_pred EEEEEeCccccHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEE
Q 015093 255 QFHVNVDKEEWKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVL 333 (413)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 333 (413)
+.+..... ..+...+..+++.. ..+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+||
T Consensus 252 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 330 (417)
T 2i4i_A 252 QKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPIL 330 (417)
T ss_dssp EEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred EEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 66665554 56778888888876 56789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|||+++++|+|+|++++||++++|.|...|.||+||+||.|+.|.|++++++.+......+.+++....+++|.++.++
T Consensus 331 vaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 409 (417)
T 2i4i_A 331 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 409 (417)
T ss_dssp EECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988764
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-58 Score=429.73 Aligned_cols=372 Identities=41% Similarity=0.655 Sum_probs=334.8
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..+|+++++++.+.+.+.+.|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 46899999999999999999999999999999999999999999999999999999999998887665566899999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|+.+.++++....+..+....|+.............++|+|+||+.|...+......+.++++||+||||++.+..
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 100 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 99999999999999888899999999888766666666788999999999999888877778889999999999998887
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcC
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLA 278 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (413)
+...+..++..++...+++++|||++..........+..+..+.... ......+...+..... ..+...+..++....
T Consensus 180 ~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~k~~~l~~~~~~~~ 257 (400)
T 1s2m_A 180 FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEE-RQKLHCLNTLFSKLQ 257 (400)
T ss_dssp HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCG-GGHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEech-hhHHHHHHHHHhhcC
Confidence 88888899988888899999999999888888888888877654433 3344555555554443 567788888888888
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~ 358 (413)
.+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~ 337 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK 337 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCS
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
|...|.||+||+||.|++|.|++++++.+...+..+.+.++..++++|.++.+.
T Consensus 338 s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 391 (400)
T 1s2m_A 338 TAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKS 391 (400)
T ss_dssp SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGG
T ss_pred CHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccccc
Confidence 999999999999999999999999999999999999999999999999887663
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-60 Score=440.84 Aligned_cols=385 Identities=62% Similarity=0.953 Sum_probs=193.1
Q ss_pred CCcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC
Q 015093 28 GQDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL 107 (413)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~ 107 (413)
...+...+++...+|+.+++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....
T Consensus 9 ~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~ 88 (394)
T 1fuu_A 9 ESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK 88 (394)
T ss_dssp --CEEESSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCC
T ss_pred ccchhhhcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCC
Confidence 34455567777788999999999999999999999999999999999999999999999999999999999988876666
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
+++++|++|+++|+.|+.+.+.++....+..+..+.|+........... .++|+|+||+.|...+........++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 7799999999999999999999998888899999999887665544444 579999999999999988777788899999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
+||||++.+.++...+..++..+++..+++++|||+++........++..+..+...........+...+........+.
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH
Confidence 99999998888999999999999989999999999999888888889999888877776666666666666555555577
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
..+..+++....+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 248 ~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 248 ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 77777887777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhccC
Q 015093 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413)
+++||++++|.|...|.||+||+||.|++|.|++++++.+...+..+.++++..++.+|..+.+++
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999887764
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-57 Score=420.42 Aligned_cols=369 Identities=40% Similarity=0.653 Sum_probs=326.3
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+|+.+++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 46888999999999999999999999999999999999999999999999999999999988876665679999999999
Q ss_pred HHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-
Q 015093 120 LAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS- 196 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~- 196 (413)
|+.|+.+.++++.... ++++..+.|+.........+. ..++|+|+||+.+...+......+.++++||+||||++.+
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999997765 788999999887665554443 4579999999999999988877788899999999999876
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCc-cccCCceEEEEEeCccccHHHHHHHHHH
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-LTLEGIKQFHVNVDKEEWKLDTLCDLYE 275 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (413)
.++...+..++...+...+++++|||+++........++..+..+...... .....+...+..... ..+...+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG-GGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc-hhHHHHHHHHHH
Confidence 356777888888888899999999999999888888999888877665443 333455555554443 567888888888
Q ss_pred hcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 276 TLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 276 ~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
....+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 247 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp HSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred hcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcch
Q 015093 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYNVVIEELPANV 409 (413)
Q Consensus 356 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
.|+|...|.||+||+||.|++|.|++++++. +...+..+.+.++..++++|.++
T Consensus 327 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 327 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp CCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 9999999999999999999999999999976 55678899999999999998763
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-56 Score=417.66 Aligned_cols=367 Identities=40% Similarity=0.707 Sum_probs=328.5
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
...+|+++++++.+.+.+...|+..|+++|.++++.+..+ +++++++|||+|||++++++++..+.....+.+++|++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4578999999999999999999999999999999999998 88999999999999999999999887666677999999
Q ss_pred ccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
|+++|+.|+.+.+++++...+..+....++...... ...++|+|+||+.+...+......+.++++||+||||++.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 999999999999999988778888887776542221 2367999999999999998887778889999999999987
Q ss_pred c-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHH
Q 015093 196 S-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLY 274 (413)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (413)
+ ..+...+..+...++.+.+++++|||+++........++..+..+...........+...+........+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHH
Confidence 6 567788888889898899999999999998888999999888887777777777788888887777777888888888
Q ss_pred HhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc
Q 015093 275 ETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 354 (413)
Q Consensus 275 ~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~ 354 (413)
.....+++||||++++.++.+++.|++.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEES
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------ChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhc-cccccCCcc
Q 015093 355 DLPT------QPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYN-VVIEELPAN 408 (413)
Q Consensus 355 ~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ 408 (413)
+.|. |...|.||+||+||.|++|.|++++.+. +......+.+++. ..+..+|.+
T Consensus 319 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 380 (395)
T 3pey_A 319 DLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTD 380 (395)
T ss_dssp SCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSS
T ss_pred CCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChH
Confidence 9998 9999999999999999999999999875 4567788888888 677776654
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-56 Score=416.78 Aligned_cols=371 Identities=40% Similarity=0.669 Sum_probs=326.5
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
...+|+.+++++.+.+.+.+.|+..|+++|.++++.+.++ +++++.+|||+|||++++++++..+.....+++++|++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 102 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 102 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEEC
Confidence 3578999999999999999999999999999999999987 88999999999999999999999887776677999999
Q ss_pred ccHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchh
Q 015093 116 PTRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~ 193 (413)
|+++|+.|+.+.++++.... +..+....++...... ....++|+|+||+.+...+.. ....+.++++||+||||+
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 99999999999999987654 5677777776543222 133578999999999998865 445567899999999999
Q ss_pred hhc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHH
Q 015093 194 MLS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCD 272 (413)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (413)
+.+ ..+...+..+...++.+.+++++|||+++........++..+..+...........+.+.+........+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (412)
T 3fht_A 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 259 (412)
T ss_dssp HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHH
Confidence 876 6778888889999988999999999999999899999999988887777777777888888887777788889999
Q ss_pred HHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEE
Q 015093 273 LYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352 (413)
Q Consensus 273 ~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi 352 (413)
++.....+++||||++++.++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 260 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 339 (412)
T 3fht_A 260 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 339 (412)
T ss_dssp HHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE
T ss_pred HHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC------CChhHHHhhhcccCCCCCcceEEEEecccc-HHHHHHHHHHhccccccCCcchhc
Q 015093 353 NYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDD-DRMLADIQRFYNVVIEELPANVAD 411 (413)
Q Consensus 353 ~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
+++.| .+...|.||+||+||.|++|.|++++++.+ ...+..+.+++...++.++.+.++
T Consensus 340 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 405 (412)
T 3fht_A 340 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 405 (412)
T ss_dssp ESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC------
T ss_pred EECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHH
Confidence 99999 467899999999999999999999999765 788899999999998888765443
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-55 Score=403.97 Aligned_cols=360 Identities=36% Similarity=0.625 Sum_probs=318.6
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
..+|+.+++++.+.+.+.+.|+..|+++|.++++.+.++ +++++.+|||+|||++++.+++..+... .+.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 467999999999999999999999999999999999988 6899999999999999999998876554 35589999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+.|+.+.++++....+..+....|+........... .++|+|+||+.+...+......+.+++++|+||||.+.+.
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 999999999999998877888989998887665554444 5799999999999999888777888999999999999988
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL 277 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (413)
++...+..++...+...+++++|||+++........+++.......... ..+...+.... ...+...+..+++ .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~l~~~l~-~ 236 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVN-ENERFEALCRLLK-N 236 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECC-GGGHHHHHHHHHC-S
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeC-hHHHHHHHHHHHh-c
Confidence 8889999999999889999999999998888888888877655443322 23444444443 3567777777776 4
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 357 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~ 357 (413)
..+++||||++++.++.+++.|++.+..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q 015093 358 TQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 358 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
.|...|.||+||+||.|++|.|++++++.+...+..+.+.++..+++++
T Consensus 317 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 317 QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp SCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred CCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 9999999999999999999999999999999999999999999888775
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=422.83 Aligned_cols=369 Identities=40% Similarity=0.673 Sum_probs=174.8
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..+|+.+++++.+.+.+..+||..|+++|.++++.++.+ +++++++|||||||++|+++++..+.....++++||++|
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 468999999999999999999999999999999999987 889999999999999999999998877776779999999
Q ss_pred cHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhh
Q 015093 117 TRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~ 194 (413)
+++|+.|+.+.++++.... +..+....++....... ...++|+|+||+.|.+++.+ ..+.+.++++||+||+|++
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 9999999999999887654 56666666655432221 23568999999999998866 3455678999999999998
Q ss_pred hc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHH
Q 015093 195 LS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273 (413)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
.+ ..+...+..+.+.++.+++++++|||+++....+...++..+..+...........+.+.+........+...+..+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 327 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL 327 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHH
Confidence 76 57778888899999989999999999999988999999998888877776666667777776666666777788888
Q ss_pred HHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE
Q 015093 274 YETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 274 ~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
+.....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 328 ~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 88777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhHHHhhhcccCCCCCcceEEEEecccc-HHHHHHHHHHhccccccCCcchh
Q 015093 354 YDLPT------QPENYLHRIGRSGRFGRKGVAINFVTRDD-DRMLADIQRFYNVVIEELPANVA 410 (413)
Q Consensus 354 ~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 410 (413)
++.|. +...|.||+||+||.|++|.|++++++.+ ...+..+.+++...++.++.+-.
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 471 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDL 471 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccH
Confidence 99994 66899999999999999999999999765 67888999999988888776543
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-52 Score=381.14 Aligned_cols=336 Identities=31% Similarity=0.536 Sum_probs=288.5
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
+++.+.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999888764 4589999999999999999
Q ss_pred HHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHH
Q 015093 127 VMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDI 206 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 206 (413)
.++++....+..+..+.|+........... .++|+|+||+.|.+.+......+.++++||+||||++.+.++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998888889999999887665554444 4899999999999988887777788999999999999988899999999
Q ss_pred HhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEE
Q 015093 207 FQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFV 286 (413)
Q Consensus 207 ~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~ 286 (413)
+...+...+++++|||+++........++..+..+... .....+........... ......+.....+++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHhCCCCcEEEEE
Confidence 99999889999999999998888888888877655332 23334444444444321 2233556667778999999
Q ss_pred cCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhh
Q 015093 287 NTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366 (413)
Q Consensus 287 ~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 366 (413)
++++.++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|...|.||
T Consensus 228 ~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~ 303 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHR 303 (337)
T ss_dssp SCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHh
Confidence 99999999998886 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcceEEEEeccccHHHHHHHHHHhcc
Q 015093 367 IGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNV 400 (413)
Q Consensus 367 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
+||+||.|++|.|++++. .+....+.+.+.++.
T Consensus 304 ~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 304 IGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp HTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred cCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999999 888888888777653
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=408.88 Aligned_cols=358 Identities=29% Similarity=0.462 Sum_probs=295.9
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhh--CCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEEcccHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVLAPTRE 119 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl~P~~~ 119 (413)
.+++++.+.+..+|+..|+++|.++++.++ .++++++.+|||+|||++|+++++..+.... .+.++||++|+++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 399999999999999999999999999999 6789999999999999999999998775542 2458999999999
Q ss_pred HHHHHHHHHHHhhcc----cCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccchh
Q 015093 120 LAQQIEKVMRALGDY----MGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEADE 193 (413)
Q Consensus 120 l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h~ 193 (413)
|+.|+.+.++++... ....+....|+.........+ ...++|+|+||+.|...+... ...+..+++||+||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 999999999987632 245677777877665554444 447899999999999887654 33456789999999999
Q ss_pred hhccCcHHHHHHHHhhCC-------CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC----ccccCCceEEEEEeCc
Q 015093 194 MLSRGFKDQIYDIFQHLP-------GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD----ELTLEGIKQFHVNVDK 262 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 262 (413)
+.++++...+..++..++ ...+++++|||+++........++..+..+..... ......+.........
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 999888888777766543 36799999999999888888888888766654332 2223344444444443
Q ss_pred cccH----HHHHHHHHHh-cCCCcEEEEEcCcccHHHHHHHHhhC---CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEE
Q 015093 263 EEWK----LDTLCDLYET-LAITQSVIFVNTRRKVDWLTDQMRSR---DHTVSATHGDMDQNSRDIIMREFRSGSSRVLI 334 (413)
Q Consensus 263 ~~~~----~~~l~~~~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli 334 (413)
.... ...+...+.. ....++||||++++.++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 3222 2333333333 45679999999999999999999876 88999999999999999999999999999999
Q ss_pred EeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccc
Q 015093 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 335 ~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
||+++++|+|+|++++||+++.|.+...|+||+||+||.|++|.|++++++.+...+..+.+.....+.
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 415 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999888766554
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-52 Score=408.28 Aligned_cols=357 Identities=29% Similarity=0.471 Sum_probs=293.8
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhh--CCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEEcccHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVLAPTREL 120 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl~P~~~l 120 (413)
+++.+.+.+...|+..|+++|.++++.++ .++++++++|||||||++|+++++..+.... .+.++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6788999999999999999999998875543 23589999999999
Q ss_pred HHHHHHHHHHhhcc----cCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccchhh
Q 015093 121 AQQIEKVMRALGDY----MGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 121 ~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h~~ 194 (413)
+.|+.+.++++... ....+....|+.........+ ...++|+|+||+.|.+.+... ...+..+++||+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987532 245677777777655544433 457899999999999887653 224566899999999999
Q ss_pred hccCcHHHHHHHHhhC-------CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCc----cccCCceEEEEEeCcc
Q 015093 195 LSRGFKDQIYDIFQHL-------PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE----LTLEGIKQFHVNVDKE 263 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~-------~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 263 (413)
.++++...+..++..+ +...+++++|||+++........++..+..+...... .....+..........
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 9888888877776554 2367899999999988888888888877665543322 2233444444444433
Q ss_pred ccHH----HHHHHHHHh-cCCCcEEEEEcCcccHHHHHHHHhhC---CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEE
Q 015093 264 EWKL----DTLCDLYET-LAITQSVIFVNTRRKVDWLTDQMRSR---DHTVSATHGDMDQNSRDIIMREFRSGSSRVLIT 335 (413)
Q Consensus 264 ~~~~----~~l~~~~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~ 335 (413)
.... ..+...+.. ...+++||||++++.++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 3322 233333333 45679999999999999999999876 889999999999999999999999999999999
Q ss_pred eCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccc
Q 015093 336 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIE 403 (413)
Q Consensus 336 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (413)
|+++++|+|+|++++||+++.|.+...|+||+||+||.|++|.|++++.+.+...+..+.+.....++
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999888765544
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=391.52 Aligned_cols=338 Identities=16% Similarity=0.210 Sum_probs=270.8
Q ss_pred CCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 44 SMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 44 ~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
.+++++.+.+.|+. +|+..|+++|.++++.++.|+++++.+|||+|||++|++|++.. .+++||++|+++|+.
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L~~ 98 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISLME 98 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHHHH
Confidence 47889999999998 79999999999999999999999999999999999999998753 348999999999999
Q ss_pred HHHHHHHHhhcccCceEEEEECCcchHHHHHHH------hcCCcEEEeChHHHH------HHHHcCCCCCCCccEEEEcc
Q 015093 123 QIEKVMRALGDYMGVKVHACVGGTSVREDQRIL------SAGVHVVVGTPGRVF------DMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 123 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~T~~~l~------~~~~~~~~~~~~~~~iIiDE 190 (413)
|+.+.++++ ++.+..+.++.......... ....+|+|+||++|. +.+.. ...+..+++||+||
T Consensus 99 q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDE 173 (591)
T 2v1x_A 99 DQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDE 173 (591)
T ss_dssp HHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEET
T ss_pred HHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEEC
Confidence 999999887 77888888887655443322 357899999999874 22222 22345689999999
Q ss_pred chhhhccC--cHHHHH---HHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc-cc
Q 015093 191 ADEMLSRG--FKDQIY---DIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK-EE 264 (413)
Q Consensus 191 ~h~~~~~~--~~~~~~---~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 264 (413)
||.+..++ +...+. .+...+ ++.+++++|||+++.....+..++..+....... ....+.+......... ..
T Consensus 174 AH~is~~g~dfr~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~ 251 (591)
T 2v1x_A 174 VHCCSQWGHDFRPDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSNTE 251 (591)
T ss_dssp GGGGSTTCTTCCGGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSSHH
T ss_pred cccccccccccHHHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCcHH
Confidence 99987655 333322 233344 4688999999999887776666665443222222 2333444433333222 23
Q ss_pred cHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCC
Q 015093 265 WKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGI 343 (413)
Q Consensus 265 ~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 343 (413)
.....+..++... .++++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|.+|+.+|||||+++++|+
T Consensus 252 ~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GI 331 (591)
T 2v1x_A 252 DFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 331 (591)
T ss_dssp HHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTC
T ss_pred HHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCC
Confidence 4556666766543 667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
|+|++++||+++.|.|...|.|++||+||.|++|.|++++++.|......+
T Consensus 332 D~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 332 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999988776555443
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-50 Score=382.67 Aligned_cols=338 Identities=19% Similarity=0.275 Sum_probs=273.0
Q ss_pred cCccCCCCCHHHHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 40 DSFDSMGLKENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..|+.+++++.+.+.+++ +|+..|+++|.++++.+++|+++++.+|||+|||++|+++++.. .++++|++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 578899999999999998 89999999999999999999999999999999999999888753 24799999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHH----HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ----RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 194 (413)
+|+.|+.+.++++ ++.+..+.++....... .......+|+++||++|........+...++++||+||||.+
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999999999885 67777887776644332 233456899999999985321111122356899999999998
Q ss_pred hccC--cHH---HHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhc--CCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 195 LSRG--FKD---QIYDIFQHLPGKIQVGVFSATMPPEALEITRKFM--NKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 195 ~~~~--~~~---~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
.+++ +.. .+..+...++ +.+++++|||+++.....+...+ ..+.... .....+++...... ...+.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~---~~~~r~~l~~~v~~---~~~~~ 224 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQI---SSFDRPNIRYMLME---KFKPL 224 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE---CCCCCTTEEEEEEE---CSSHH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe---CCCCCCceEEEEEe---CCCHH
Confidence 7654 332 3334455554 57899999999887655443333 2333222 12223444333222 24567
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQ 347 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~ 347 (413)
..+..++....++++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 77888888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 348 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 348 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
++.||+++.|.|...|.|++||+||.|++|.|++++++.|....+.+
T Consensus 305 v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred ccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776655444
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=365.70 Aligned_cols=325 Identities=20% Similarity=0.260 Sum_probs=255.8
Q ss_pred HHHHHHh-CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH
Q 015093 51 LLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 51 ~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
+.+.+++ +++ +|+++|.++++.+.+++++++.+|||||||++++++++..+ ..+++++|++|+++|+.|+.+.++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHH
Confidence 4444544 455 89999999999999999999999999999999988887765 234599999999999999999999
Q ss_pred HhhcccCceEEEEECCcchH---HHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc---------
Q 015093 130 ALGDYMGVKVHACVGGTSVR---EDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS--------- 196 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~--------- 196 (413)
+++. .++++..++|+.... .....+. ..++|+|+||+.|.+.+.. ....++++||+||||++..
T Consensus 86 ~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 86 KLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHH
Confidence 9887 788999999998763 3333333 3489999999999877764 4456789999999997653
Q ss_pred --cCcHHH-HHHHHhhCC-----------CCceEEEEeeeC-ChhHH-HHHHHhcCCCEEEEecCCccccCCceEEEEEe
Q 015093 197 --RGFKDQ-IYDIFQHLP-----------GKIQVGVFSATM-PPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFHVNV 260 (413)
Q Consensus 197 --~~~~~~-~~~~~~~~~-----------~~~~~i~lSAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (413)
.++... +..++..++ ...+++++|||+ +.... .....+.. +...........+.+.+...
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~ 238 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 238 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc
Confidence 344444 666666654 678999999994 43332 22333322 11122223334455544433
Q ss_pred CccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeE-eecCCCCHHHHHHHHHHHhcCCCeEEEE----
Q 015093 261 DKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVS-ATHGDMDQNSRDIIMREFRSGSSRVLIT---- 335 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~---- 335 (413)
.+...+..+++. .++++||||++++.++.+++.|++.++.+. .+||. +|+ ++.|++|+.+||||
T Consensus 239 ----~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~ 307 (414)
T 3oiy_A 239 ----RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAY 307 (414)
T ss_dssp ----CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCT
T ss_pred ----CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCc
Confidence 355566777766 347999999999999999999999999998 88985 344 99999999999999
Q ss_pred eCccccCCCCCC-CCEEEEcCCC--CChhHHHhhhcccCCCC----CcceEEEEeccccHHHHHHHHHHhc
Q 015093 336 TDLLARGIDVQQ-VSLVINYDLP--TQPENYLHRIGRSGRFG----RKGVAINFVTRDDDRMLADIQRFYN 399 (413)
Q Consensus 336 t~~~~~G~d~~~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (413)
|+++++|+|+|+ +++||+++.| .|...|.||+||+||.| +.|.+++++ .+...+..+.+++.
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 479999998 67777888888887
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=379.04 Aligned_cols=350 Identities=19% Similarity=0.281 Sum_probs=273.4
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
+|+++++++.+.+.++..|+..|+++|.++++. +.+++++++++|||||||+++.+++++.+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 588899999999999999999999999999998 88899999999999999999999998776532 359999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|+.|+++.++++.. .+.++..++|+...... ....++|+|+||++|...+......+.++++||+||+|.+.+..+
T Consensus 80 La~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 99999999975543 48899999987654332 123579999999999998887666677899999999999988788
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEE-----EeCc-----cccHHHH
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHV-----NVDK-----EEWKLDT 269 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~ 269 (413)
...+..++..++++.+++++|||+++ ..++.. +++... +... ..+..+..... .... .......
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAEL-IVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEE-EECC---CCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcc-cCCC---CCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 88888888887778999999999975 334444 333221 1111 11111111111 0111 1233444
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC---------------------------------CCeeEeecCCCCHH
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR---------------------------------DHTVSATHGDMDQN 316 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~---------------------------------~~~~~~~~~~~~~~ 316 (413)
+.+.+. .++++||||++++.++.+++.|.+. ...+..+||++++.
T Consensus 230 ~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~ 307 (720)
T 2zj8_A 230 VYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRD 307 (720)
T ss_dssp HHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHH
Confidence 444443 4579999999999999999998753 12488999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC----CCCChhHHHhhhcccCCCC--CcceEEEEeccc
Q 015093 317 SRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD----LPTQPENYLHRIGRSGRFG--RKGVAINFVTRD 386 (413)
Q Consensus 317 ~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 386 (413)
+|..+++.|++|..+|||||+++++|+|+|++++||+ ++ .|.|..+|.||+||+||.| .+|.|++++++.
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999999998 44 5889999999999999988 479999999988
Q ss_pred cHHHHHHHHHHhccccccCC
Q 015093 387 DDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~ 406 (413)
+.. ..+.+++....+++.
T Consensus 388 ~~~--~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 388 DPR--EVMNHYIFGKPEKLF 405 (720)
T ss_dssp CHH--HHHHHHTTSCCCCCC
T ss_pred cHH--HHHHHHhcCCCCCcE
Confidence 732 234456654444443
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=373.62 Aligned_cols=350 Identities=18% Similarity=0.247 Sum_probs=267.9
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhh-hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
.+|+++++++.+.+.++..|+..|+++|.++++. +.+++++++++|||||||+++.+++++.+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 5689999999999999999999999999999999 78899999999999999999999998876532 35999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|+.+.++++ ...+.++...+|+....... ...++|+|+||++|...+......+.++++||+||+|.+.+..
T Consensus 86 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 9999999999654 34588899999876543321 2367999999999999888766557789999999999988777
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEE-----------EEeCc-----
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH-----------VNVDK----- 262 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----- 262 (413)
+...+..++.+++ +.+++++|||+++ ..++... ++.+. +.... .+..+.... .....
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~~~---r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISN-YKQIAKW-LGAEP-VATNW---RPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHH-HTCEE-EECCC---CSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHH-hCCCc-cCCCC---CCCCceEEEEecCCcccceeeecCcchhhh
Confidence 8888888777776 7899999999975 3444443 33221 11111 111111111 10110
Q ss_pred ---cccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC------------------------------------
Q 015093 263 ---EEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD------------------------------------ 303 (413)
Q Consensus 263 ---~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~------------------------------------ 303 (413)
.......+...+. .++++||||++++.++.+++.|.+..
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 312 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLIS 312 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHh
Confidence 1233444444443 45899999999999999999998642
Q ss_pred CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC-------CCCChhHHHhhhcccCC
Q 015093 304 HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-------LPTQPENYLHRIGRSGR 372 (413)
Q Consensus 304 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R 372 (413)
..+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||+ ++ .|.|..+|.||+||+||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 24889999999999999999999999999999999999999999999998 77 78999999999999999
Q ss_pred CC--CcceEEEEeccccHHHHHHHHHHhccccccC
Q 015093 373 FG--RKGVAINFVTRDDDRMLADIQRFYNVVIEEL 405 (413)
Q Consensus 373 ~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
.| .+|.|++++++.+. ....+.+++....+++
T Consensus 393 ~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPI 426 (715)
T ss_dssp TTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCC
T ss_pred CCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCc
Confidence 87 47999999987763 1123344554444443
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-47 Score=376.46 Aligned_cols=332 Identities=17% Similarity=0.243 Sum_probs=258.9
Q ss_pred CccCCC--CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 41 SFDSMG--LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 41 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
+|++++ +++.+.+.++..|+..|+++|.++++.+.+++++++++|||||||+++.+++++.+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 466777 8999999999999999999999999999999999999999999999999999887654 35999999999
Q ss_pred HHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
+|+.|+++.++++. ..+.++...+|+...... ....++|+|+||++|...+......+.++++||+||+|.+.+..
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996543 458889999987764332 12367999999999999888866557789999999999988777
Q ss_pred cHHHHHHHHhhC---CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEE-------EEeC-----cc
Q 015093 199 FKDQIYDIFQHL---PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH-------VNVD-----KE 263 (413)
Q Consensus 199 ~~~~~~~~~~~~---~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----~~ 263 (413)
+...+..++..+ .++.+++++|||+++ ..++.. +++.+. +.... .+..+.... .... ..
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~---r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDW---RPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCC---CSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCC---CCccceEEEeeCCeeeccCcchhhhhh
Confidence 776666665544 568999999999975 344444 444322 11111 111111111 0000 00
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC------------------------------CCeeEeecCCC
Q 015093 264 EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR------------------------------DHTVSATHGDM 313 (413)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~------------------------------~~~~~~~~~~~ 313 (413)
......+.+.+. .++++||||++++.++.+++.|.+. +..+..+||++
T Consensus 229 ~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l 306 (702)
T 2p6r_A 229 VKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGL 306 (702)
T ss_dssp CCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTS
T ss_pred hhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCC
Confidence 114445555443 4679999999999999999988752 13578899999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC---CCCChhHHHhhhcccCCCC--CcceEEEEec
Q 015093 314 DQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD---LPTQPENYLHRIGRSGRFG--RKGVAINFVT 384 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~ 384 (413)
+..+|..+++.|++|+.+|||||+++++|+|+|++++||+ ++ .|.|..+|.||+||+||.| .+|.|+++++
T Consensus 307 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 307 LNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999999999999998 44 6889999999999999988 4799999999
Q ss_pred ccc
Q 015093 385 RDD 387 (413)
Q Consensus 385 ~~~ 387 (413)
+.+
T Consensus 387 ~~~ 389 (702)
T 2p6r_A 387 KRD 389 (702)
T ss_dssp GGG
T ss_pred Ccc
Confidence 877
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=376.59 Aligned_cols=353 Identities=21% Similarity=0.248 Sum_probs=228.4
Q ss_pred HHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHH
Q 015093 52 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 52 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
...+..+|+..|+++|.++++.++.|+++++++|||+|||+++++++++.+..... +.+++|++|+++|+.||.++++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999887755432 2589999999999999999999
Q ss_pred HhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCcH-HHHHHHH
Q 015093 130 ALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGFK-DQIYDIF 207 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~-~~~~~~~ 207 (413)
+++...++++..++|+.............++|+|+||+.|.+.+..... .+..+++||+||||++.+.... ..+...+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 9988788999999998765444444445689999999999999987766 6778999999999997654422 2222222
Q ss_pred hh-----CCCCceEEEEeeeCCh-------h-HHHHHH---------------------HhcCCCEEEEecCCcccc---
Q 015093 208 QH-----LPGKIQVGVFSATMPP-------E-ALEITR---------------------KFMNKPVRILVKRDELTL--- 250 (413)
Q Consensus 208 ~~-----~~~~~~~i~lSAT~~~-------~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~--- 250 (413)
.. .+..+++++|||||.. . ...+.. .+...|............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 22 2456899999999961 1 111111 111122211110000000
Q ss_pred -------------------C------------------------------------------------------------
Q 015093 251 -------------------E------------------------------------------------------------ 251 (413)
Q Consensus 251 -------------------~------------------------------------------------------------ 251 (413)
.
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence 0
Q ss_pred -----------------------------CceEEEE---------------EeCccccHHHHHHHHHHhc----CCCcEE
Q 015093 252 -----------------------------GIKQFHV---------------NVDKEEWKLDTLCDLYETL----AITQSV 283 (413)
Q Consensus 252 -----------------------------~~~~~~~---------------~~~~~~~~~~~l~~~~~~~----~~~~~l 283 (413)
.+.+.+. .......+...+..++... ..+++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 0000000 0001234666677777655 567999
Q ss_pred EEEcCcccHHHHHHHHhhCC----CeeEee--------cCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCE
Q 015093 284 IFVNTRRKVDWLTDQMRSRD----HTVSAT--------HGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 284 If~~~~~~a~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
|||++++.++.+++.|++.+ +.+..+ |++++..+|.++++.|++ |+.+|||||+++++|+|+|++++
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 99999999999999999987 788888 559999999999999998 99999999999999999999999
Q ss_pred EEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH----HHHhccccccCC
Q 015093 351 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI----QRFYNVVIEELP 406 (413)
Q Consensus 351 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 406 (413)
||++++|+|...|.||+|| ||. ++|.|+++++..+......+ .++++.....++
T Consensus 483 VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 483 VILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp EEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999 998 78999999998877555544 444444444443
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=365.17 Aligned_cols=332 Identities=17% Similarity=0.205 Sum_probs=202.1
Q ss_pred CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
+..+|+++|.++++.++.++++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+++++++...+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3458999999999999999999999999999999999999887765432 55899999999999999999999998889
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCcHHHH-HHHHhh----C
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGFKDQI-YDIFQH----L 210 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~~~~-~~~~~~----~ 210 (413)
+.+..++|+.............++|+|+||+.|.+.+..... .+..+++||+||||++.+......+ ...+.. .
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 999999998866555545555689999999999999988776 6888999999999998766543332 222222 1
Q ss_pred CCCceEEEEeeeCChh-----------HHHHHHHh------------------cCCCEEEEecCCccccCC---------
Q 015093 211 PGKIQVGVFSATMPPE-----------ALEITRKF------------------MNKPVRILVKRDELTLEG--------- 252 (413)
Q Consensus 211 ~~~~~~i~lSAT~~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~--------- 252 (413)
.+..+++++||||... ...+...+ ...+..............
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 3468899999999531 11111111 111111111000000000
Q ss_pred ------------ceEEEE--------------------------------------------------------------
Q 015093 253 ------------IKQFHV-------------------------------------------------------------- 258 (413)
Q Consensus 253 ------------~~~~~~-------------------------------------------------------------- 258 (413)
......
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 000000
Q ss_pred ------------------------------------------EeCccccHHHHHHHHHHh----cCCCcEEEEEcCcccH
Q 015093 259 ------------------------------------------NVDKEEWKLDTLCDLYET----LAITQSVIFVNTRRKV 292 (413)
Q Consensus 259 ------------------------------------------~~~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a 292 (413)
.......+...+..++.. ...+++||||++++.+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 000012344455555543 4568999999999999
Q ss_pred HHHHHHHhhC------------CCeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEEcCCCCC
Q 015093 293 DWLTDQMRSR------------DHTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 359 (413)
Q Consensus 293 ~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s 359 (413)
+.+++.|++. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++|+|
T Consensus 404 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s 483 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGN 483 (556)
T ss_dssp HHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSC
T ss_pred HHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCC
Confidence 9999999875 4555666788999999999999999 99999999999999999999999999999999
Q ss_pred hhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 360 PENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 360 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
+..|.||+|| ||. ++|.++++++..+.....
T Consensus 484 ~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 514 (556)
T 4a2p_A 484 VTKMIQVRGR-GRA-AGSKCILVTSKTEVVENE 514 (556)
T ss_dssp HHHHHHC----------CCEEEEESCHHHHHHH
T ss_pred HHHHHHhcCC-CCC-CCceEEEEEeCcchHHHH
Confidence 9999999999 998 789999999987764433
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=378.34 Aligned_cols=332 Identities=18% Similarity=0.215 Sum_probs=263.3
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
..|...++++.+...+...+...|+++|.++++.+..|+++++++|||||||+++.++++..+.. +.+++|++|+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHH
Confidence 45666777777766666666778999999999999999999999999999999999999887744 348999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
|++|+++.+.++.. .+..++|+... ...++|+|+||+.|.+.+......+.++++||+||||++.+..+
T Consensus 239 La~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~r 307 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER 307 (1108)
T ss_dssp HHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHH
T ss_pred HHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccch
Confidence 99999999998764 57778887762 34589999999999999988776677899999999999988888
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChh--HHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCc---------c-----
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPE--ALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDK---------E----- 263 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----- 263 (413)
...+..++..++...+++++|||+++. ...++......+..+...... +..+.++...... .
T Consensus 308 g~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~ 385 (1108)
T 3l9o_A 308 GVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFRE 385 (1108)
T ss_dssp HHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECH
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchhh
Confidence 899999999999999999999998764 334555555555554433221 1222222211000 0
Q ss_pred ----------------------------------------ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC
Q 015093 264 ----------------------------------------EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD 303 (413)
Q Consensus 264 ----------------------------------------~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~ 303 (413)
...+..+...+.....+++||||++++.|+.++..|...+
T Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~ 465 (1108)
T 3l9o_A 386 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 465 (1108)
T ss_dssp HHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHH
T ss_pred hhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhcc
Confidence 1223334444555566799999999999999999986532
Q ss_pred Ce---------------------------------------eEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 304 HT---------------------------------------VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 304 ~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
+. +..+||++++.+|..+++.|++|.++|||||+++++|+|
T Consensus 466 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GID 545 (1108)
T 3l9o_A 466 FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 545 (1108)
T ss_dssp HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCC
Confidence 22 789999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCC--------CCChhHHHhhhcccCCCC--CcceEEEEecccc
Q 015093 345 VQQVSLVINYDL--------PTQPENYLHRIGRSGRFG--RKGVAINFVTRDD 387 (413)
Q Consensus 345 ~~~~~~vi~~~~--------~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~ 387 (413)
+|++++||+++. |.|..+|+||+||+||.| ..|.|++++.+..
T Consensus 546 iP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 546 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp C--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred CCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 999999997654 347778999999999999 6799999998763
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=357.19 Aligned_cols=331 Identities=20% Similarity=0.227 Sum_probs=229.4
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
+|+++|.++++.++.++++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+++++++...++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 7999999999999999999999999999999999999888765431 55899999999999999999999988889999
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCc-HHHHHHHHhhC-----CC
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGF-KDQIYDIFQHL-----PG 212 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~-~~~~~~~~~~~-----~~ 212 (413)
..++|+............+++|+|+||+.|...+..... .+..+++||+||||++.+... ...+...+... ..
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999866555444555689999999999999988766 677899999999999876542 23233333332 24
Q ss_pred CceEEEEeeeCChhH--------HHH--HHHhcCCCEEEEecC------CccccCCceEEEEE-----------------
Q 015093 213 KIQVGVFSATMPPEA--------LEI--TRKFMNKPVRILVKR------DELTLEGIKQFHVN----------------- 259 (413)
Q Consensus 213 ~~~~i~lSAT~~~~~--------~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------------- 259 (413)
..+++++||||.... ..+ ....+.......... .....+........
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKE 243 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHH
Confidence 578999999995421 111 111222111110000 00000010000000
Q ss_pred --------------------------------------------------------------------------------
Q 015093 260 -------------------------------------------------------------------------------- 259 (413)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (413)
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 323 (555)
T 3tbk_A 244 TEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMT 323 (555)
T ss_dssp HHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence
Q ss_pred ------------------------------------------eCccccHHHHHHHHHHh----cCCCcEEEEEcCcccHH
Q 015093 260 ------------------------------------------VDKEEWKLDTLCDLYET----LAITQSVIFVNTRRKVD 293 (413)
Q Consensus 260 ------------------------------------------~~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a~ 293 (413)
......+...+..++.. ...+++||||++++.++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~ 403 (555)
T 3tbk_A 324 DALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVD 403 (555)
T ss_dssp HHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHH
Confidence 00012344455555544 35689999999999999
Q ss_pred HHHHHHhhCC------------CeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEEcCCCCCh
Q 015093 294 WLTDQMRSRD------------HTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 360 (413)
Q Consensus 294 ~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~ 360 (413)
.+++.|.+.+ .....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++|+|+
T Consensus 404 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 404 ALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNV 483 (555)
T ss_dssp HHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSC
T ss_pred HHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCH
Confidence 9999998763 344455669999999999999999 999999999999999999999999999999999
Q ss_pred hHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 361 ENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
..|+||+|| ||. ++|.+++++++.+......+
T Consensus 484 ~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 484 IKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999 898 88999999999877666555
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=347.49 Aligned_cols=324 Identities=20% Similarity=0.234 Sum_probs=250.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+|+++|.++++.+..+ ++++.+|||+|||++++.++...+. ..+.++||++|+++|+.||.+++.++....+..+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 7999999999999999 9999999999999999998887765 334589999999999999999999987444558888
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
++|+.......... ..++|+|+||+.|...+.........+++||+||||++.+......+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 88887765443333 35799999999999998887777888999999999998765445555555555566788999999
Q ss_pred eCChhHHH---HHHHhcCCCEEEEecCCcc-----ccCCceEEEEEe---------------------------------
Q 015093 222 TMPPEALE---ITRKFMNKPVRILVKRDEL-----TLEGIKQFHVNV--------------------------------- 260 (413)
Q Consensus 222 T~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------------------------- 260 (413)
||..+... ....+.............. ............
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 99744322 3332222221111110000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015093 261 -------------------------------------------------------------------------------- 260 (413)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (413)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence
Q ss_pred --------------CccccHHHHHHHHHHh----cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecC--------CCC
Q 015093 261 --------------DKEEWKLDTLCDLYET----LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHG--------DMD 314 (413)
Q Consensus 261 --------------~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~--------~~~ 314 (413)
.....+...+.+++.. ..++++||||++++.++.+++.|++.++.+..+|| +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 0122345556666655 46789999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 315 QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
..+|.++++.|++|+.+|||+|+++++|+|+|.+++||++++|+++..|.||+||+||.|+ |.++.++++.+.+.
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 99999999887654
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-44 Score=362.71 Aligned_cols=320 Identities=19% Similarity=0.265 Sum_probs=255.8
Q ss_pred HHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 55 IYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 55 l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
...++| +|+++|.++++.+.+++++++++|||||||+++.++++..+.. +.+++|++|+++|++|+++++.++..
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 344566 5999999999999999999999999999999999888877643 35999999999999999999998764
Q ss_pred cCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCc
Q 015093 135 MGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKI 214 (413)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 214 (413)
.+..++|+.... ..++|+|+||+.|.+.+......+.++++||+||+|.+.+..+...+..++..++...
T Consensus 155 ---~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp ---CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred ---CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 677888877632 3578999999999998888777788899999999999988888888999999999999
Q ss_pred eEEEEeeeCChhHH--HHHHHhcCCCEEEEecCCccccCCceEEEEEeC---------cc--------------------
Q 015093 215 QVGVFSATMPPEAL--EITRKFMNKPVRILVKRDELTLEGIKQFHVNVD---------KE-------------------- 263 (413)
Q Consensus 215 ~~i~lSAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-------------------- 263 (413)
+++++|||+++... ..+....+.+..+..... .+..+.++..... ..
T Consensus 225 ~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 225 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 99999999976432 233333344554443322 1222222222100 00
Q ss_pred -------------------------ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCe-------------
Q 015093 264 -------------------------EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT------------- 305 (413)
Q Consensus 264 -------------------------~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~------------- 305 (413)
...+..+...+......++||||+++..++.+++.|...++.
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 122334455555556679999999999999999999875442
Q ss_pred --------------------------eEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC
Q 015093 306 --------------------------VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD 355 (413)
Q Consensus 306 --------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~ 355 (413)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ ++
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 788999999999999999999999999999999999999999999998 88
Q ss_pred C----CCChhHHHhhhcccCCCCC--cceEEEEeccc-cHHHH
Q 015093 356 L----PTQPENYLHRIGRSGRFGR--KGVAINFVTRD-DDRML 391 (413)
Q Consensus 356 ~----~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~-~~~~~ 391 (413)
. |.|+.+|.||+||+||.|. .|.|++++++. +...+
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~ 505 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVA 505 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHH
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHH
Confidence 7 8899999999999999996 59999999876 43333
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=365.07 Aligned_cols=335 Identities=18% Similarity=0.216 Sum_probs=209.9
Q ss_pred HhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 56 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
..+|+..|+++|.++++.+..++++++++|||+|||++++++++..+..... +.++||++|+++|+.||.+.+++++.
T Consensus 242 ~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3457889999999999999999999999999999999999999888765431 55899999999999999999999998
Q ss_pred ccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCcHHH-HHHHHhh--
Q 015093 134 YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGFKDQ-IYDIFQH-- 209 (413)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~~~-~~~~~~~-- 209 (413)
..++++..++|+............+++|+|+||+.|.+.+..... .+.++++||+||||++.+...... +...+..
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 889999999999876655555556789999999999999987766 677899999999999876543322 2233322
Q ss_pred --CCCCceEEEEeeeCCh-----------hHHHHHH------------------HhcCCCEEEEecCCccccCC------
Q 015093 210 --LPGKIQVGVFSATMPP-----------EALEITR------------------KFMNKPVRILVKRDELTLEG------ 252 (413)
Q Consensus 210 --~~~~~~~i~lSAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~------ 252 (413)
..+..+++++||||.. ....+.. .+...+..............
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 1456889999999952 1111111 11111111111000000000
Q ss_pred ------------------ceEEEEE-e-----------------------------------------------------
Q 015093 253 ------------------IKQFHVN-V----------------------------------------------------- 260 (413)
Q Consensus 253 ------------------~~~~~~~-~----------------------------------------------------- 260 (413)
+...... .
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000000 0
Q ss_pred -----------------------------------------------CccccHHHHHHHHHHh----cCCCcEEEEEcCc
Q 015093 261 -----------------------------------------------DKEEWKLDTLCDLYET----LAITQSVIFVNTR 289 (413)
Q Consensus 261 -----------------------------------------------~~~~~~~~~l~~~~~~----~~~~~~lIf~~~~ 289 (413)
.....+...+..++.. ..++++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 0012244445555544 4668999999999
Q ss_pred ccHHHHHHHHhhC------------CCeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEEcCC
Q 015093 290 RKVDWLTDQMRSR------------DHTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 290 ~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
+.++.+++.|++. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||++++
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999873 4566677888999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHH
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA 392 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 392 (413)
|+|+..|+||+|| ||. ++|.|+++++..+.....
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~~ 755 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENE 755 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHHH
Confidence 9999999999999 998 889999999987665433
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=360.63 Aligned_cols=336 Identities=18% Similarity=0.211 Sum_probs=208.5
Q ss_pred HHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC--ceeEEEEcccHHHHHHHHHHHHH
Q 015093 53 RGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL--QCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 53 ~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~--~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
....-.++..|+++|.++++.++.|+++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+++++
T Consensus 239 ~~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 239 KPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ---------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3333456779999999999999999999999999999999999999888765431 45899999999999999999999
Q ss_pred hhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC-CCCCccEEEEccchhhhccCcH-HHHHHHHh
Q 015093 131 LGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL-RPDYIRMFVLDEADEMLSRGFK-DQIYDIFQ 208 (413)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~-~~~~~~~~ 208 (413)
++...++++..++|+.............++|+|+||+.|.+.+..... .+.++++||+||||++.+.... ..+...+.
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 988888999999998865544444445689999999999999987666 6777999999999998765432 22223332
Q ss_pred h----CCCCceEEEEeeeCCh-----------hHHHHH------------------HHhcCCCEEEEecCCccccCC---
Q 015093 209 H----LPGKIQVGVFSATMPP-----------EALEIT------------------RKFMNKPVRILVKRDELTLEG--- 252 (413)
Q Consensus 209 ~----~~~~~~~i~lSAT~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--- 252 (413)
. ..+..+++++||||.. .+..+. ..+...+..............
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 2456889999999952 111111 111122221111111000000
Q ss_pred ---------------------ceEEEEE----------------------------------------------------
Q 015093 253 ---------------------IKQFHVN---------------------------------------------------- 259 (413)
Q Consensus 253 ---------------------~~~~~~~---------------------------------------------------- 259 (413)
+......
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000000
Q ss_pred -------------------------------------------------eCccccHHHHHHHHHHh----cCCCcEEEEE
Q 015093 260 -------------------------------------------------VDKEEWKLDTLCDLYET----LAITQSVIFV 286 (413)
Q Consensus 260 -------------------------------------------------~~~~~~~~~~l~~~~~~----~~~~~~lIf~ 286 (413)
......+...+..++.. ..++++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 00012244445555554 3467999999
Q ss_pred cCcccHHHHHHHHhhC------------CCeeEeecCCCCHHHHHHHHHHHhc-CCCeEEEEeCccccCCCCCCCCEEEE
Q 015093 287 NTRRKVDWLTDQMRSR------------DHTVSATHGDMDQNSRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 287 ~~~~~a~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
++++.++.+++.|.+. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|.+++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999986 5556667888999999999999999 99999999999999999999999999
Q ss_pred cCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 354 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 354 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+++|+|+..|+||+|| ||. +.|.++++++..+...
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 9999999999999999 998 7899999998876643
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=360.08 Aligned_cols=321 Identities=19% Similarity=0.243 Sum_probs=253.0
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..++ +|+++|.++++.++.|+++++++|||||||++++.+++..+. .+.+++|++|+++|+.|+.+.+++++ ..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~ 148 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-DEK 148 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-CTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-CCC
Confidence 4677 799999999999999999999999999999998888877663 34589999999999999999999977 678
Q ss_pred ceEEEEECCcch---HHHHHHHhc-CCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc-----------cCcHH
Q 015093 137 VKVHACVGGTSV---REDQRILSA-GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS-----------RGFKD 201 (413)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~~~~~-~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-----------~~~~~ 201 (413)
+++..++|+... ......+.. .++|+|+||+.|.+++.. ..+.++++||+||||++.. .++..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 899999999876 344444444 489999999999877664 4456789999999997654 44555
Q ss_pred H-HHHHHhhCC-----------CCceEEEEeeeC-ChhHH-HHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHH
Q 015093 202 Q-IYDIFQHLP-----------GKIQVGVFSATM-PPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKL 267 (413)
Q Consensus 202 ~-~~~~~~~~~-----------~~~~~i~lSAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (413)
. +..++..++ ...+++++|||+ +.... ........ +...........+.+.+... .+.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~----~k~ 298 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS----RSK 298 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC----CCH
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec----CHH
Confidence 5 677777665 788999999994 33322 22333333 22222333445555555444 355
Q ss_pred HHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeE-eecCCCCHHHHHHHHHHHhcCCCeEEEE----eCccccC
Q 015093 268 DTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVS-ATHGDMDQNSRDIIMREFRSGSSRVLIT----TDLLARG 342 (413)
Q Consensus 268 ~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~G 342 (413)
..+..+++.. ++++||||++++.++.+++.|++.++.+. .+||. |.+ ++.|++|+.+|||| |+++++|
T Consensus 299 ~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarG 371 (1104)
T 4ddu_A 299 EKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRG 371 (1104)
T ss_dssp HHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCS
T ss_pred HHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEec
Confidence 5666777663 48999999999999999999999999998 99982 555 99999999999999 9999999
Q ss_pred CCCCC-CCEEEEcCCCC---------------------------------------------------------------
Q 015093 343 IDVQQ-VSLVINYDLPT--------------------------------------------------------------- 358 (413)
Q Consensus 343 ~d~~~-~~~vi~~~~~~--------------------------------------------------------------- 358 (413)
+|+|+ +++||+++.|.
T Consensus 372 IDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~ 451 (1104)
T 4ddu_A 372 VDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVK 451 (1104)
T ss_dssp CCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEE
T ss_pred CcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEec
Confidence 99999 99999999998
Q ss_pred ---------ChhHHHhhhcccCCCCCc--ceEEEEeccccHHHHHHHHHHhc
Q 015093 359 ---------QPENYLHRIGRSGRFGRK--GVAINFVTRDDDRMLADIQRFYN 399 (413)
Q Consensus 359 ---------s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~~~~~~~~~~~ 399 (413)
+...|+||+||+||.|.. +.++.++...|...++.+.+.+.
T Consensus 452 ~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 452 DEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 777999999999996543 24455555578888888888876
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=351.98 Aligned_cols=320 Identities=17% Similarity=0.236 Sum_probs=249.3
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
++| +|+++|.++++.+.+|+++++.+|||||||+++++++...+.. +.+++|++|+++|+.|+++.++++.. +.
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 444 5999999999999999999999999999999998888776533 45899999999999999999988654 67
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+..++|+... ....+|+|+||+.|.+.+......+.++++||+||||.+.++++...+..++..++...+++
T Consensus 110 ~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 110 NIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp CEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 88888888753 23579999999999999888777778899999999999988888888889999999999999
Q ss_pred EEeeeCChhHHHHHHHhc---CCCEEEEecCCccccCCceEEEE------------------------------------
Q 015093 218 VFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFHV------------------------------------ 258 (413)
Q Consensus 218 ~lSAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 258 (413)
++|||+++.. ++..++. .....+..... .+..+.....
T Consensus 183 lLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~--r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (997)
T 4a4z_A 183 LLSATVPNTY-EFANWIGRTKQKNIYVISTPK--RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAP 259 (997)
T ss_dssp EEECCCTTHH-HHHHHHHHHHTCCEEEEECSS--CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------
T ss_pred EEcCCCCChH-HHHHHHhcccCCceEEEecCC--CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccc
Confidence 9999997543 3333322 12222221111 1111111110
Q ss_pred --------------------------------------------------------EeCccccHHHHHHHHHHhcCCCcE
Q 015093 259 --------------------------------------------------------NVDKEEWKLDTLCDLYETLAITQS 282 (413)
Q Consensus 259 --------------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~ 282 (413)
...........+...+.....+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~ 339 (997)
T 4a4z_A 260 SKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPM 339 (997)
T ss_dssp ---------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCE
Confidence 000122345667777777777899
Q ss_pred EEEEcCcccHHHHHHHHhhCCC---------------------------------------eeEeecCCCCHHHHHHHHH
Q 015093 283 VIFVNTRRKVDWLTDQMRSRDH---------------------------------------TVSATHGDMDQNSRDIIMR 323 (413)
Q Consensus 283 lIf~~~~~~a~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~ 323 (413)
||||++++.++.+++.|.+.++ .+..+||++++.+|..+++
T Consensus 340 IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~ 419 (997)
T 4a4z_A 340 VVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 419 (997)
T ss_dssp EEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHH
Confidence 9999999999999999987655 4789999999999999999
Q ss_pred HHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCC---------ChhHHHhhhcccCCCC--CcceEEEEec--cccHHH
Q 015093 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------QPENYLHRIGRSGRFG--RKGVAINFVT--RDDDRM 390 (413)
Q Consensus 324 ~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~g--~~g~~~~~~~--~~~~~~ 390 (413)
.|.+|..+|||||+++++|+|+|+ ..||+.+.+. |..+|.|++||+||.| ..|.|++++. ..+...
T Consensus 420 ~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~ 498 (997)
T 4a4z_A 420 LFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIAT 498 (997)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHH
T ss_pred HHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHH
Confidence 999999999999999999999999 6666655554 9999999999999998 5688888884 234444
Q ss_pred HHHH
Q 015093 391 LADI 394 (413)
Q Consensus 391 ~~~~ 394 (413)
+..+
T Consensus 499 ~~~~ 502 (997)
T 4a4z_A 499 FKEV 502 (997)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=349.84 Aligned_cols=322 Identities=17% Similarity=0.231 Sum_probs=221.1
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccC---ceeEEEEcccHHHHHHH-HHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESL---QCQALVLAPTRELAQQI-EKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~---~~~~lvl~P~~~l~~q~-~~~~~~~~~~~~~ 137 (413)
+|+++|.++++.++.|+++++.+|||+|||++++++++..+..... +.++||++|+++|+.|| .+++++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 7999999999999999999999999999999999999887755432 25899999999999999 9999998764 47
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHH------HcCCCCCCCccEEEEccchhhhccC-cHHHHHHHHhhC
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDML------RRQSLRPDYIRMFVLDEADEMLSRG-FKDQIYDIFQHL 210 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~------~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~~~~~~ 210 (413)
.+..++|+..............+|+|+||+.|.+.+ ....+.+..+++||+||||++.... +...+...+...
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 888888887655444444567899999999999887 3444667779999999999875432 222222222211
Q ss_pred -------------CCCceEEEEeeeCChh-----------HHHHHHHhc------------------CCCEEEEecCCcc
Q 015093 211 -------------PGKIQVGVFSATMPPE-----------ALEITRKFM------------------NKPVRILVKRDEL 248 (413)
Q Consensus 211 -------------~~~~~~i~lSAT~~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~ 248 (413)
.+.++++++||||... .......+. ..+..........
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 1467899999999862 111111111 1111111000000
Q ss_pred ccCC-----------------c---eE-----------------------------------------------------
Q 015093 249 TLEG-----------------I---KQ----------------------------------------------------- 255 (413)
Q Consensus 249 ~~~~-----------------~---~~----------------------------------------------------- 255 (413)
.... + ..
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00
Q ss_pred ---------------------EEEEeCc-------------------------cccHHHHHHHHH----HhcC-CCcEEE
Q 015093 256 ---------------------FHVNVDK-------------------------EEWKLDTLCDLY----ETLA-ITQSVI 284 (413)
Q Consensus 256 ---------------------~~~~~~~-------------------------~~~~~~~l~~~~----~~~~-~~~~lI 284 (413)
....... ...+...+..++ .... .+++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 0000000 001111122222 2223 789999
Q ss_pred EEcCcccHHHHHHHHhhC------CCeeEeecCC--------CCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCE
Q 015093 285 FVNTRRKVDWLTDQMRSR------DHTVSATHGD--------MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 285 f~~~~~~a~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
||++++.++.+++.|++. |+.+..+||+ ++..+|.++++.|++|+.+|||||+++++|+|+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 351 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 351 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
||++++|+|+..|.||+||+||.| +.++++....
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999986654 3444444433
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-43 Score=358.76 Aligned_cols=322 Identities=19% Similarity=0.270 Sum_probs=252.3
Q ss_pred HHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 55 IYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 55 l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
++.+|+. | ++|.++++.++.|+++++++|||||||+ +.++++..+.. .+++++|++|+++|+.|+.+.+++++..
T Consensus 51 ~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 51 RKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp HTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3458998 9 9999999999999999999999999998 66666665543 2458999999999999999999999988
Q ss_pred cCc----eEEEEECCcchHHH---HHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHH
Q 015093 135 MGV----KVHACVGGTSVRED---QRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 135 ~~~----~~~~~~~~~~~~~~---~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 207 (413)
.++ .+..++|+.....+ ...+.. ++|+|+||+.|.+.+.. +.++++||+||||++.+ +...+..++
T Consensus 126 ~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~ 198 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLL 198 (1054)
T ss_dssp TCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHH
T ss_pred cCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHH
Confidence 888 89999998876653 222344 89999999999987665 45789999999999877 456677777
Q ss_pred hhCC-----------CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 208 QHLP-----------GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 208 ~~~~-----------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
..+. ...+++++|||+++. ......++..+..+...........+.+.+.. ..+...+..+++.
T Consensus 199 ~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----~~k~~~L~~ll~~ 273 (1054)
T 1gku_B 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----DESISTLSSILEK 273 (1054)
T ss_dssp HHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES----CCCTTTTHHHHTT
T ss_pred HHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec----hhHHHHHHHHHhh
Confidence 6663 457789999999876 32222222222222223333334455555442 3345556666666
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEE----eCccccCCCCCCC-CEE
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLIT----TDLLARGIDVQQV-SLV 351 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~----t~~~~~G~d~~~~-~~v 351 (413)
. ++++||||++++.++.+++.|++. +.+..+||++ .++++.|++|+.+|||| |+++++|+|+|++ ++|
T Consensus 274 ~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~V 346 (1054)
T 1gku_B 274 L-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFA 346 (1054)
T ss_dssp S-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEE
T ss_pred c-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEE
Confidence 5 478999999999999999999988 9999999997 47789999999999999 8999999999995 999
Q ss_pred EEcCCC-----------------------------------------------------------------------CCh
Q 015093 352 INYDLP-----------------------------------------------------------------------TQP 360 (413)
Q Consensus 352 i~~~~~-----------------------------------------------------------------------~s~ 360 (413)
|+++.| .|.
T Consensus 347 I~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 426 (1054)
T 1gku_B 347 VFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDL 426 (1054)
T ss_dssp EEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECH
T ss_pred EEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcH
Confidence 999999 789
Q ss_pred hHHHhhhcccCCCCCcc--eEEEEeccccHHHHHHHHHHhcc
Q 015093 361 ENYLHRIGRSGRFGRKG--VAINFVTRDDDRMLADIQRFYNV 400 (413)
Q Consensus 361 ~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~~~~~~~~ 400 (413)
..|+||+||+||.|+.| .+++++...+...+..+.+.+..
T Consensus 427 ~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 427 RTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 99999999999987765 48888888888899999888875
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=340.98 Aligned_cols=322 Identities=18% Similarity=0.232 Sum_probs=240.7
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCC------CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
.+.+.+.+..++| +|+++|.++++.+.++ .++++++|||||||++++++++..+.. +.+++|++|+++|+
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La 430 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILA 430 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHH
Confidence 3566677788999 9999999999998775 589999999999999999999987754 34899999999999
Q ss_pred HHHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 122 QQIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 122 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
.|+++.++++....++++..++|+......... ....++|+|+||+.+.. ...+.++++||+||+|++...
T Consensus 431 ~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 431 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH
Confidence 999999999998888999999999876554322 23468999999987743 345677899999999986322
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh-
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET- 276 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 276 (413)
. ...+......+++++|||||.+...... .++................+.... .. ......+...+..
T Consensus 506 q-----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~---~~-~~~~~~l~~~i~~~ 574 (780)
T 1gm5_A 506 Q-----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTML---VP-MDRVNEVYEFVRQE 574 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECC---CC-SSTHHHHHHHHHHH
T ss_pred H-----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEE---ec-cchHHHHHHHHHHH
Confidence 1 1122223346889999999977654332 233321111111111111222111 11 1223334444432
Q ss_pred c-CCCcEEEEEcCcc--------cHHHHHHHHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 277 L-AITQSVIFVNTRR--------KVDWLTDQMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 277 ~-~~~~~lIf~~~~~--------~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
. .+++++|||+..+ .++.+++.|++ .+..+..+||+++..+|+++++.|++|+.+|||||+++++|+|
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GID 654 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGID 654 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSC
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcccc
Confidence 2 4578999999764 47888899988 4678999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCC-ChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 345 VQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 345 ~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
+|++++||+++.|. +...+.|++||+||.|++|.|++++++.+..
T Consensus 655 iP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 655 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred CCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 99999999999985 7889999999999999999999999854433
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=354.50 Aligned_cols=341 Identities=16% Similarity=0.201 Sum_probs=259.3
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
.+.....+.+...+|..++|+|+++++.+.. ++++++++|||||||+++.++++..+.... +.+++|++|+++|++|.
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~ 988 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQV 988 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHH
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHH
Confidence 3556777888888999999999999999865 567999999999999999999999886654 44899999999999999
Q ss_pred HHHHHH-hhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEEEEccchhhhccCcHH
Q 015093 125 EKVMRA-LGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVLDEADEMLSRGFKD 201 (413)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIiDE~h~~~~~~~~~ 201 (413)
++++++ +....+.++..++|+...... . ...++|+|+||+++..++++... .++++++||+||+|.+.+. .+.
T Consensus 989 ~~~~~~~f~~~~g~~V~~ltGd~~~~~~--~-~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~ 1064 (1724)
T 4f92_B 989 YMDWYEKFQDRLNKKVVLLTGETSTDLK--L-LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGP 1064 (1724)
T ss_dssp HHHHHHHHTTTSCCCEEECCSCHHHHHH--H-HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THH
T ss_pred HHHHHHHhchhcCCEEEEEECCCCcchh--h-cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCc
Confidence 999865 556678999999998764332 2 23479999999999877765433 2567899999999987653 454
Q ss_pred HHHHHH-------hhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccH------HH
Q 015093 202 QIYDIF-------QHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWK------LD 268 (413)
Q Consensus 202 ~~~~~~-------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 268 (413)
.+..++ ...+.+.|+|++|||.++ ..++..++..............++..+.......+..... ..
T Consensus 1065 ~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~ 1143 (1724)
T 4f92_B 1065 VLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAK 1143 (1724)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHH
T ss_pred cHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcc
Confidence 444433 345678999999999974 5566666654443333333444455555554444332211 12
Q ss_pred HHHHHH-HhcCCCcEEEEEcCcccHHHHHHHHhhC----------------------------------CCeeEeecCCC
Q 015093 269 TLCDLY-ETLAITQSVIFVNTRRKVDWLTDQMRSR----------------------------------DHTVSATHGDM 313 (413)
Q Consensus 269 ~l~~~~-~~~~~~~~lIf~~~~~~a~~l~~~l~~~----------------------------------~~~~~~~~~~~ 313 (413)
.+...+ +....++++|||++++.++.++..|... ...+..+|+++
T Consensus 1144 ~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL 1223 (1724)
T 4f92_B 1144 PVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGL 1223 (1724)
T ss_dssp HHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTS
T ss_pred hHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCC
Confidence 222233 3346679999999999998888776421 23588999999
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEc----------CCCCChhHHHhhhcccCCCCC--cceEEE
Q 015093 314 DQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY----------DLPTQPENYLHRIGRSGRFGR--KGVAIN 381 (413)
Q Consensus 314 ~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~----------~~~~s~~~~~Q~~GR~~R~g~--~g~~~~ 381 (413)
++.+|..+++.|++|.++|||||++++.|+|+|...+||.. ..|.+..+|.||+||+||.|. .|.|++
T Consensus 1224 ~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avl 1303 (1724)
T 4f92_B 1224 SPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVI 1303 (1724)
T ss_dssp CHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEE
Confidence 99999999999999999999999999999999998888742 125789999999999999986 699999
Q ss_pred EeccccHHHHH
Q 015093 382 FVTRDDDRMLA 392 (413)
Q Consensus 382 ~~~~~~~~~~~ 392 (413)
++.+.+...+.
T Consensus 1304 l~~~~~~~~~~ 1314 (1724)
T 4f92_B 1304 MCQGSKKDFFK 1314 (1724)
T ss_dssp EEEGGGHHHHH
T ss_pred EecchHHHHHH
Confidence 99887765543
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=321.34 Aligned_cols=322 Identities=18% Similarity=0.215 Sum_probs=243.1
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..|+ .|+++|..+++.++.|+ +..++||+|||+++.+|++..... +..++|++||++|+.|..+++..+...++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4799 99999999999999998 999999999999999999843222 44899999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhh-ccC----------
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEML-SRG---------- 198 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~---------- 198 (413)
+++..+.||....... ....++|+|+||+.| ++++... ...+..+.++|+||||.++ +..
T Consensus 153 l~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 9999999998754333 334589999999999 5665543 3456778999999999987 442
Q ss_pred -----cHHHHHHHHhhCCC---------CceEE-----------------EEeeeCCh---hHHHHH--HHhcCCCEEEE
Q 015093 199 -----FKDQIYDIFQHLPG---------KIQVG-----------------VFSATMPP---EALEIT--RKFMNKPVRIL 242 (413)
Q Consensus 199 -----~~~~~~~~~~~~~~---------~~~~i-----------------~lSAT~~~---~~~~~~--~~~~~~~~~~~ 242 (413)
+...+..++..++. ..++. ++|||.+. .+...+ ..++.....+.
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 45677778877762 45555 67887642 221111 11221100000
Q ss_pred e-------------------------------------------------------------------------------
Q 015093 243 V------------------------------------------------------------------------------- 243 (413)
Q Consensus 243 ~------------------------------------------------------------------------------- 243 (413)
+
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 0
Q ss_pred ----cCCccccCCceEEEEEeCccccHHHHHHHHHHh--cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHH
Q 015093 244 ----KRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET--LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNS 317 (413)
Q Consensus 244 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~ 317 (413)
.+....................+...+...+.. ..+.++||||+|++.++.+++.|++.|+++..+||++...+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 000000000000001122345677777777754 25578999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcCCCeEEEEeCccccCCCCC--------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 318 RDIIMREFRSGSSRVLITTDLLARGIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
+..+.+.++.| .|+|||+++++|+|++ +..+||+++.|.|...|.||+||+||.|.+|.+++|++..|.
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 77665555544 6999999999999999 788999999999999999999999999999999999998764
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=330.20 Aligned_cols=310 Identities=16% Similarity=0.140 Sum_probs=231.2
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEE
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
.+|+++|.++++.+.+++++++++|||+|||++++.++...+... +.+++|++|+++|+.||.++++++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 389999999999999999999999999999999988887766432 349999999999999999999998665567788
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.+.++...... .....+|+|+|++.+... ....+.++++||+||||++.+ ..+..++..++...+++++|
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEE
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEE
Confidence 88887664332 345689999999976532 223456689999999999854 45667778887788999999
Q ss_pred eeCChhHHHH--HHHhcCCCEEEEecCC------ccccCCceEEEEEeCcc--------------------ccHHHHHHH
Q 015093 221 ATMPPEALEI--TRKFMNKPVRILVKRD------ELTLEGIKQFHVNVDKE--------------------EWKLDTLCD 272 (413)
Q Consensus 221 AT~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~ 272 (413)
|||++..... ...+++.. ....... ...+..+.......+.. ..+...+..
T Consensus 260 ATp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (510)
T 2oca_A 260 GSLRDGKANIMQYVGMFGEI-FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAK 338 (510)
T ss_dssp SCGGGCSSCHHHHHHHHCSE-ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHH
T ss_pred eCCCCCcccHHHhHHhhCCe-EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHH
Confidence 9997553221 11222221 1111111 11111112222211110 112233444
Q ss_pred HHHhc---CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe-CccccCCCCCCC
Q 015093 273 LYETL---AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT-DLLARGIDVQQV 348 (413)
Q Consensus 273 ~~~~~---~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~G~d~~~~ 348 (413)
++... ...+++||++ .+.++.+++.|.+.+..+..+||+++..+|+++++.|++|+.+||||| +++++|+|+|++
T Consensus 339 ~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v 417 (510)
T 2oca_A 339 LAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417 (510)
T ss_dssp HHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSE
T ss_pred HHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccC
Confidence 44433 3345556655 899999999999988899999999999999999999999999999999 999999999999
Q ss_pred CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEec
Q 015093 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 349 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
++||++++|+|...|.|++||+||.|+.+.++++++
T Consensus 418 ~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 418 HHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999998774555544
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=339.17 Aligned_cols=322 Identities=17% Similarity=0.208 Sum_probs=246.4
Q ss_pred CCCCHHHHHHH-HhCCCCCCcHHHHhhhhhhhC----CC--cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 45 MGLKENLLRGI-YAYGFEKPSAIQQRGIVPFCK----GL--DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 45 ~~l~~~~~~~l-~~~~~~~~~~~Q~~~~~~~~~----~~--~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
++.++...+.+ ..++| +|+++|.++++.+.+ ++ ++++++|||+|||.+++.+++..+.. +.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 45556555555 45677 579999999999876 55 89999999999999998888766543 3499999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHH----HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR----ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
++|+.|+++.++++....++++..+++......... .....++|+|+||+.+. ....+.++++||+||+|+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 999999999999888777888888887655443322 22346899999997663 345677899999999999
Q ss_pred hhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHH
Q 015093 194 MLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDL 273 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (413)
+.. .....+..++.+.++++|||||.+...........+... ..........+......... ......+
T Consensus 737 ~g~-----~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~--i~~~~~~r~~i~~~~~~~~~----~~i~~~i 805 (1151)
T 2eyq_A 737 FGV-----RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI--IATPPARRLAVKTFVREYDS----MVVREAI 805 (1151)
T ss_dssp SCH-----HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEE--CCCCCCBCBCEEEEEEECCH----HHHHHHH
T ss_pred cCh-----HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceE--EecCCCCccccEEEEecCCH----HHHHHHH
Confidence 532 233445555567899999999987765555444333221 11111122233333332221 2222233
Q ss_pred HHhc-CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCE
Q 015093 274 YETL-AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 350 (413)
Q Consensus 274 ~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~ 350 (413)
++.. .+++++|||++++.++.+++.|++. +..+..+||+++..+|+++++.|++|+.+|||||+++++|+|+|++++
T Consensus 806 l~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 806 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp HHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 3332 5679999999999999999999987 788999999999999999999999999999999999999999999999
Q ss_pred EEEcCC-CCChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 351 VINYDL-PTQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 351 vi~~~~-~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
||+.+. +++..+|.|++||+||.|+.|.|++++.+.
T Consensus 886 VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 886 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999887 578999999999999999999999998764
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=353.88 Aligned_cols=330 Identities=18% Similarity=0.268 Sum_probs=246.9
Q ss_pred CCCCCcHHHHhhhhhhh-CCCcEEEeCCCCCchhHHHHHHHHHhcccc--------cCceeEEEEcccHHHHHHHHHHHH
Q 015093 59 GFEKPSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYE--------SLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~-~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~--------~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
||..|+++|.++++.+. ++++++++||||||||+++.++++..+... ..+.+++|++|+++|++|..+.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 68899999999999876 478899999999999999999999887542 235689999999999999999999
Q ss_pred HhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCC--CCCCccEEEEccchhhhccCcHHHHHHHH
Q 015093 130 ALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL--RPDYIRMFVLDEADEMLSRGFKDQIYDIF 207 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 207 (413)
+.....++++..++|+....... ...++|+|+||+++..++.+... .++.+++||+||+|.+.+ .++..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 98888899999999987643321 23579999999999766655432 256789999999997754 5665555444
Q ss_pred h-------hCCCCceEEEEeeeCChhHHHHHHHhcCCCE-EEEecCCccccCCceEEEEEeCccc--cHHHHH----HHH
Q 015093 208 Q-------HLPGKIQVGVFSATMPPEALEITRKFMNKPV-RILVKRDELTLEGIKQFHVNVDKEE--WKLDTL----CDL 273 (413)
Q Consensus 208 ~-------~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l----~~~ 273 (413)
. ..+...|+|++|||.++ ..++..++...+. .........++..+.+.+....... .....+ ...
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 3 34668899999999974 4555555443321 1122223344444444433333211 112222 222
Q ss_pred HHh-cCCCcEEEEEcCcccHHHHHHHHhhC-------------------------------------CCeeEeecCCCCH
Q 015093 274 YET-LAITQSVIFVNTRRKVDWLTDQMRSR-------------------------------------DHTVSATHGDMDQ 315 (413)
Q Consensus 274 ~~~-~~~~~~lIf~~~~~~a~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~ 315 (413)
+.. ..++++||||++++.|+.+++.|.+. ...+..+||++++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 222 34578999999999999888887531 2347899999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----cC------CCCChhHHHhhhcccCCCCC--cceEEEEe
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD------LPTQPENYLHRIGRSGRFGR--KGVAINFV 383 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----~~------~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~ 383 (413)
.+|..+++.|++|.++|||||++++.|+|+|..++||. ++ .|.|..+|.||+||+||.|. .|.++++.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999998874 22 35689999999999999874 69999999
Q ss_pred ccccHHHHHH
Q 015093 384 TRDDDRMLAD 393 (413)
Q Consensus 384 ~~~~~~~~~~ 393 (413)
.+.+......
T Consensus 471 ~~~~~~~~~~ 480 (1724)
T 4f92_B 471 SHGELQYYLS 480 (1724)
T ss_dssp ESTTCCHHHH
T ss_pred cchhHHHHHH
Confidence 8876554433
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=316.92 Aligned_cols=296 Identities=19% Similarity=0.248 Sum_probs=222.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce-EE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK-VH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~-~~ 140 (413)
.|+++|.++++.+..++++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6999999999999999999999999999999998887754 348999999999999999999884 677 88
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.++|+.. ...+|+|+|++.+...+... ..++++||+||||++.+..+.. +...++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRLGLT 225 (472)
T ss_dssp EBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTCC-CSEEEEEE
T ss_pred EECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhcC-CCeEEEEe
Confidence 8888764 24789999999998766431 1347999999999998877653 444554 67899999
Q ss_pred eeCChh-------------------HHHHHHHhcCCCEE--EEecCCcc------------------------ccCCceE
Q 015093 221 ATMPPE-------------------ALEITRKFMNKPVR--ILVKRDEL------------------------TLEGIKQ 255 (413)
Q Consensus 221 AT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~------------------------~~~~~~~ 255 (413)
|||... ..+....++..+.. +....... ....+..
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 999732 11111111111110 00000000 0000000
Q ss_pred EEEE--------------------eCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCH
Q 015093 256 FHVN--------------------VDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315 (413)
Q Consensus 256 ~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~ 315 (413)
.... ......+...+..+++...++++||||++.+.++.+++.|. +..+||+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~ 380 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSR 380 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCS
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCH
Confidence 0000 00123456778888888888899999999999999999884 5679999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc---ceEEEEeccccHH
Q 015093 316 NSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK---GVAINFVTRDDDR 389 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~---g~~~~~~~~~~~~ 389 (413)
.+|+++++.|++|+.+|||+|+++++|+|+|++++||++++|+|+..|.|++||+||.|+. ..++.+++....+
T Consensus 381 ~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp HHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred HHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999853 3455566655433
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=325.77 Aligned_cols=323 Identities=17% Similarity=0.129 Sum_probs=231.1
Q ss_pred CCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHH
Q 015093 45 MGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQI 124 (413)
Q Consensus 45 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~ 124 (413)
+++++.+.+++... ...+.|+|..+++.+.+++++++.+|||||||++++++++..+.. .+.+++|++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHH
Confidence 55666666655543 367888888889999999999999999999999999999887654 245899999999999999
Q ss_pred HHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHH
Q 015093 125 EKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
.+.++. ..+....+... .....+..+.++|.+.+.+.+... ..+.++++||+||||++ +..+...+.
T Consensus 232 ~~~l~~------~~v~~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRG------LPIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTT------SCEEECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcC------CceeEecccce-----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 987752 23332221100 011233467788988888766654 34677999999999987 444555566
Q ss_pred HHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEE
Q 015093 205 DIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSV 283 (413)
Q Consensus 205 ~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 283 (413)
.+...++ .+.+++++|||+++....+.. ..+..+..... .+. .....+...+.. ..+++|
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~--~~~~~ll~~l~~-~~~~~L 359 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPE--RSWNTGFDWITD-YQGKTV 359 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCS--SCCSSSCHHHHH-CCSCEE
T ss_pred HHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCH--HHHHHHHHHHHh-CCCCEE
Confidence 6665554 578999999999765432111 11111111110 010 011112222333 357999
Q ss_pred EEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEE------------
Q 015093 284 IFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV------------ 351 (413)
Q Consensus 284 If~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~v------------ 351 (413)
|||++++.++.+++.|++.++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 360 VF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~ 434 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVIL 434 (618)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEE
T ss_pred EEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceec
Confidence 99999999999999999999999999985 688899999999999999999999999997 8888
Q ss_pred --------EEcCCCCChhHHHhhhcccCCCCC-cceEEEEec---cccHHHHHHHHHHhccccccCCc
Q 015093 352 --------INYDLPTQPENYLHRIGRSGRFGR-KGVAINFVT---RDDDRMLADIQRFYNVVIEELPA 407 (413)
Q Consensus 352 --------i~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
++++.|.|..+|+||+||+||.|. +|.|+++++ +.+...+..+...+......+|.
T Consensus 435 ~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 435 TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred ccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 566668999999999999999964 899999998 67777777777766554444433
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=307.29 Aligned_cols=322 Identities=17% Similarity=0.202 Sum_probs=225.6
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|+++|..+++.++.|+ +..++||+|||+++++|++..... +..++|++||+.|+.|..+.+..++..+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 454 89999999999999998 999999999999999999854332 348999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcCC------CCCCCccEEEEccchhhh-ccC-----------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQS------LRPDYIRMFVLDEADEML-SRG----------- 198 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~------~~~~~~~~iIiDE~h~~~-~~~----------- 198 (413)
++..+.||...... .....++|+|+||+.| ++++...- ..+..+.++|+||||.++ +..
T Consensus 145 ~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 99999999875432 2334589999999999 67776542 456779999999999987 332
Q ss_pred ----cHHHHHHHHhhCCC--------------------CceEE------------------------EEeeeCCh---hH
Q 015093 199 ----FKDQIYDIFQHLPG--------------------KIQVG------------------------VFSATMPP---EA 227 (413)
Q Consensus 199 ----~~~~~~~~~~~~~~--------------------~~~~i------------------------~lSAT~~~---~~ 227 (413)
+...+..++..++. ..++. ++|||.+. .+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 33455555555542 22332 67777542 11
Q ss_pred HHHH--HHhcCC---------------------------------C----EEEEecCCccccCC----------------
Q 015093 228 LEIT--RKFMNK---------------------------------P----VRILVKRDELTLEG---------------- 252 (413)
Q Consensus 228 ~~~~--~~~~~~---------------------------------~----~~~~~~~~~~~~~~---------------- 252 (413)
...+ ..++.. + ..+.+.........
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 1000 000000 0 00001000000000
Q ss_pred ------------------------------ceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHh
Q 015093 253 ------------------------------IKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMR 300 (413)
Q Consensus 253 ------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~ 300 (413)
.............+...+...+... .+.++||||+|++.++.+++.|+
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 0000112233456888888877543 55789999999999999999999
Q ss_pred hCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCC--------------------------------
Q 015093 301 SRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQV-------------------------------- 348 (413)
Q Consensus 301 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~-------------------------------- 348 (413)
+.|+++..+|+++...++..+.+.++.| .|+|||+++++|+|++..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999999888888888888877 699999999999999864
Q ss_pred -----CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 349 -----SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 349 -----~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
.+||.++.|.|...|.|++||+||.|.+|.+++|++..|..
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999987743
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=304.45 Aligned_cols=324 Identities=19% Similarity=0.239 Sum_probs=247.2
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccC
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMG 136 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~ 136 (413)
..|+ .|+++|..+++.+..|+ +..++||+|||+++.+|++..... +..++|++||+.|+.|..+++..+...++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3687 99999999999999998 999999999999999999643332 34799999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCCCccEEEEccchhhh-cc-----------
Q 015093 137 VKVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIRMFVLDEADEML-SR----------- 197 (413)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~----------- 197 (413)
+++.++.|+....... ....++|+|+||+.| ++++... ...+..+.++|+||||.++ +.
T Consensus 181 Lsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 181 LQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp CCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 9999999998754332 333589999999999 6776653 3556778999999999987 32
Q ss_pred ----CcHHHHHHHHhhCC---------CCceEE-----------------EEeeeCCh---hHHHHH--HHhcCCCEEEE
Q 015093 198 ----GFKDQIYDIFQHLP---------GKIQVG-----------------VFSATMPP---EALEIT--RKFMNKPVRIL 242 (413)
Q Consensus 198 ----~~~~~~~~~~~~~~---------~~~~~i-----------------~lSAT~~~---~~~~~~--~~~~~~~~~~~ 242 (413)
++...+..++..++ +..++. ++|||.+. .+...+ ..++.....+.
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 35677888888887 566777 77888653 222111 11221110000
Q ss_pred --------ec----------------------------------------------------------------------
Q 015093 243 --------VK---------------------------------------------------------------------- 244 (413)
Q Consensus 243 --------~~---------------------------------------------------------------------- 244 (413)
+.
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 00
Q ss_pred -----CCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHH
Q 015093 245 -----RDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNS 317 (413)
Q Consensus 245 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~ 317 (413)
+...+................+...+...+... .+.++||||+|++.++.+++.|++.|+++..+|+++...+
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rE 498 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQE 498 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHH
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHH
Confidence 000000000000011223356777777766543 5568999999999999999999999999999999988777
Q ss_pred HHHHHHHHhcCCCeEEEEeCccccCCCCCCC-------------------------------------------------
Q 015093 318 RDIIMREFRSGSSRVLITTDLLARGIDVQQV------------------------------------------------- 348 (413)
Q Consensus 318 r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~------------------------------------------------- 348 (413)
+..+.+.++.| .|+|||+++++|+|++..
T Consensus 499 a~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 576 (922)
T 1nkt_A 499 ATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIE 576 (922)
T ss_dssp HHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 77777777766 699999999999999965
Q ss_pred ---CEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 349 ---SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 349 ---~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
.+||.++.|.|...|.|++||+||.|.+|.+++|++..|.-+
T Consensus 577 ~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 577 AGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp TTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred cCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 489999999999999999999999999999999999887644
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=322.25 Aligned_cols=336 Identities=15% Similarity=0.186 Sum_probs=244.1
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhC-CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
....+|..+++++.+.+.+...+ ..|.+.|.+++..+.. ++++++++|||||||+.....++........+.++++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 34678999999999999999888 6788889888877665 567999999999999843332322222222245799999
Q ss_pred ccHHHHHHHHHHHHHhh-cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh-
Q 015093 116 PTRELAQQIEKVMRALG-DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE- 193 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~- 193 (413)
|+++++.|+.+.+.... ...+..++........ .....+|+++|++.+.+.+... ..+.++++||+||+|.
T Consensus 148 P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R 220 (773)
T 2xau_A 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK------TSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHER 220 (773)
T ss_dssp SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGC
T ss_pred chHHHHHHHHHHHHHHhCCchhheecceeccccc------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcccc
Confidence 99999999988775533 2223333332221110 1235789999999999877664 3477799999999996
Q ss_pred hhccCc-HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccc---cHHHH
Q 015093 194 MLSRGF-KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEE---WKLDT 269 (413)
Q Consensus 194 ~~~~~~-~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 269 (413)
..+... ...+..+.... ++.+++++|||++.. .+ ..++.....+...... ..+...+....... ..+..
T Consensus 221 ~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 221 TLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HH-HHHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHH
Confidence 443222 23344444444 478999999999642 33 3444443333332221 12333332222222 12334
Q ss_pred HHHHHHhcCCCcEEEEEcCcccHHHHHHHHhh-----------CCCeeEeecCCCCHHHHHHHHHHHh-----cCCCeEE
Q 015093 270 LCDLYETLAITQSVIFVNTRRKVDWLTDQMRS-----------RDHTVSATHGDMDQNSRDIIMREFR-----SGSSRVL 333 (413)
Q Consensus 270 l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~vl 333 (413)
+..++.....+++||||+++++++.+++.|.+ .++.+..+||+++..+|.++++.|. +|..+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 44455555678999999999999999999985 5788999999999999999999999 9999999
Q ss_pred EEeCccccCCCCCCCCEEEEcCC------------------CCChhHHHhhhcccCCCCCcceEEEEeccccH
Q 015093 334 ITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDD 388 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 388 (413)
|||+++++|+|+|++++||+++. |.|..+|.||+||+||. ++|.|+.++++.+.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999887 88999999999999998 78999999976554
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=302.99 Aligned_cols=287 Identities=18% Similarity=0.151 Sum_probs=209.0
Q ss_pred CCCCCcHHHHhhhhhhhCCCcE-EEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 59 GFEKPSAIQQRGIVPFCKGLDV-IQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 59 ~~~~~~~~Q~~~~~~~~~~~~~-lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
|+.+|+++|. +++.++++++. ++.+|||||||++++++++..+... +.+++|++|+++|+.|+.+.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 5678999985 79999988876 9999999999999888888765432 4589999999999999998774 33
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHH-hhCCCCceE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIF-QHLPGKIQV 216 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~-~~~~~~~~~ 216 (413)
.+......... ....+..|.++|++.+.+.+... ..+.++++||+||||++ +.........+. ...+.+.++
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 33332222110 11234578899999998877654 44677899999999976 222222221121 223457899
Q ss_pred EEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHH
Q 015093 217 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLT 296 (413)
Q Consensus 217 i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~ 296 (413)
+++|||+++.... .+...+..+.... ...... ...+...+.. ..+++||||++++.++.++
T Consensus 145 i~~SAT~~~~~~~---~~~~~~~~~~~~~-~~p~~~--------------~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 145 IFMTATPPGSTDP---FPQSNSPIEDIER-EIPERS--------------WNTGFDWITD-YQGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp EEECSSCTTCCCS---SCCCSSCEEEEEC-CCCSSC--------------CSSSCHHHHH-CCSCEEEECSSHHHHHHHH
T ss_pred EEEccCCCccchh---hhcCCCceEecCc-cCCchh--------------hHHHHHHHHh-CCCCEEEEcCCHHHHHHHH
Confidence 9999999764322 1222222222110 000000 0011222333 3569999999999999999
Q ss_pred HHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC--------------------C
Q 015093 297 DQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD--------------------L 356 (413)
Q Consensus 297 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~--------------------~ 356 (413)
+.|++.++.+..+|+++. +++++.|++|+.+|||||+++++|+|+|+ ++||+++ .
T Consensus 206 ~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~ 280 (451)
T 2jlq_A 206 NCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPI 280 (451)
T ss_dssp HHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEE
T ss_pred HHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccc
Confidence 999999999999999753 57899999999999999999999999999 9999988 8
Q ss_pred CCChhHHHhhhcccCCCCC-cceEEEEecc
Q 015093 357 PTQPENYLHRIGRSGRFGR-KGVAINFVTR 385 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~~ 385 (413)
|.|..+|.||+||+||.|+ +|.|++++..
T Consensus 281 p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 281 PVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999999999998 8999888754
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-39 Score=311.73 Aligned_cols=306 Identities=22% Similarity=0.228 Sum_probs=213.2
Q ss_pred HHHhCCCC-----CCcHHHH-----hhhhhhh------CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 54 GIYAYGFE-----KPSAIQQ-----RGIVPFC------KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 54 ~l~~~~~~-----~~~~~Q~-----~~~~~~~------~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
.+..+||. .|+++|. .+++.++ +++++++++|||||||++|+++++..+... +.+++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 34445555 8999999 9998888 899999999999999999999998775542 4589999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+.|+++.++.+. +. ...+... .....+.-+-+.+.+.+.+.+... ..+.++++||+||+|++ +.
T Consensus 280 r~La~Q~~~~l~~~~----i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~ 346 (673)
T 2wv9_A 280 RVVAAEMAEALRGLP----VR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DP 346 (673)
T ss_dssp HHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CH
T ss_pred HHHHHHHHHHHhcCC----ee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-Cc
Confidence 999999998887542 21 1111100 011122345566667776655554 45778999999999987 22
Q ss_pred CcHHHHHHHHhhC-CCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHh
Q 015093 198 GFKDQIYDIFQHL-PGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYET 276 (413)
Q Consensus 198 ~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (413)
.+......+.... +...++++||||+++....+... ..++ ......... .....+...+..
T Consensus 347 ~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i--------------~~v~~~~~~--~~~~~~l~~l~~ 408 (673)
T 2wv9_A 347 ASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV--------------HDVSSEIPD--RAWSSGFEWITD 408 (673)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE--------------EEEECCCCS--SCCSSCCHHHHS
T ss_pred cHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce--------------EEEeeecCH--HHHHHHHHHHHh
Confidence 1112222222222 25789999999997653211110 0111 111100111 011111122222
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE---
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--- 353 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~--- 353 (413)
..+++||||++++.++.+++.|++.++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 409 -~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 409 -YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp -CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred -CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCC
Confidence 46799999999999999999999999999999994 789999999999999999999999999999 999997
Q ss_pred -----------------cCCCCChhHHHhhhcccCCC-CCcceEEEEe---ccccHHHHHHHHHHh
Q 015093 354 -----------------YDLPTQPENYLHRIGRSGRF-GRKGVAINFV---TRDDDRMLADIQRFY 398 (413)
Q Consensus 354 -----------------~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~~~~~~~~~~~~~ 398 (413)
++.|.|..+|.||+||+||. |++|.|++++ ++.+...+..+...+
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 45788999999999999998 7899999996 456655555555544
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=307.99 Aligned_cols=312 Identities=16% Similarity=0.187 Sum_probs=196.1
Q ss_pred CCcHHHHhhhhhhhC----C-CcEEEeCCCCCchhHHHHHHHHHhcccc------cCceeEEEEcccHHHHHHHH-HHHH
Q 015093 62 KPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYE------SLQCQALVLAPTRELAQQIE-KVMR 129 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~------~~~~~~lvl~P~~~l~~q~~-~~~~ 129 (413)
.|+++|.++++.+.. + +++++++|||+|||++++..+...+... ..+.++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 799999999998875 4 5699999999999999866655544332 14569999999999999998 7777
Q ss_pred HhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc----CCCCCCCccEEEEccchhhhccCcHHHHHH
Q 015093 130 ALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR----QSLRPDYIRMFVLDEADEMLSRGFKDQIYD 205 (413)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~----~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 205 (413)
.++ ..+..+.++. .....+|+|+||+.|...... ..+....+++||+||||++.+.. ...+..
T Consensus 258 ~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 653 3333433322 234679999999999876542 23445668999999999986532 244556
Q ss_pred HHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC-----ccccCCceEEEE----------------------
Q 015093 206 IFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD-----ELTLEGIKQFHV---------------------- 258 (413)
Q Consensus 206 ~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---------------------- 258 (413)
++..++ ..+++++||||..........+++.+........ ...+........
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 777776 4679999999986544444444554332221110 000000000000
Q ss_pred ----EeCcc------ccH----HHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCC--------eeEeecCCCCH
Q 015093 259 ----NVDKE------EWK----LDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDH--------TVSATHGDMDQ 315 (413)
Q Consensus 259 ----~~~~~------~~~----~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~--------~~~~~~~~~~~ 315 (413)
..... ... ...+...++.. ..+++||||+++++|+.+++.|.+.+. .+..+||.++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~- 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG- 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-
Confidence 00000 001 12233334333 457999999999999999999987543 2677888875
Q ss_pred HHHHHHHHHHhcCCCe---EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCC---cceEEEEeccccH
Q 015093 316 NSRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR---KGVAINFVTRDDD 388 (413)
Q Consensus 316 ~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~---~g~~~~~~~~~~~ 388 (413)
.+|+++++.|++|+.+ ||++|+++++|+|+|.+++||+++++.|...|+|++||++|.+. +..++++-...+.
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~g~~ 561 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSA 561 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECSSSH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecCCcH
Confidence 3799999999998765 88899999999999999999999999999999999999999874 3444444444343
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-39 Score=306.77 Aligned_cols=279 Identities=20% Similarity=0.224 Sum_probs=210.4
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.++++|..+++.+.+++++++.+|||||||.++++++++. +.+++|++|+++|+.|+.+.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 5677888888888889999999999999999998887763 3489999999999999988776543 455666
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce--EEEE
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ--VGVF 219 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~--~i~l 219 (413)
..|+.. .....+|+|+||+.| +....+.+.++++||+||||.+ +.++...+..+++.++...+ ++++
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEE
Confidence 666654 245689999999998 4556677788999999999854 55566667778888876555 7888
Q ss_pred eeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHH
Q 015093 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQM 299 (413)
Q Consensus 220 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l 299 (413)
|||+++... ...+........ ......+ ... ... +.....+++||||++++.++.+++.|
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~~---~~~~i~~---~~~-~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVALS---NTGEIPF---YGK-AIP-------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEECB---SCSSEEE---TTE-EEC-------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCcccc------cCCcceEEEeec---ccchhHH---HHh-hhh-------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 999986321 011110000000 0000000 000 000 12336689999999999999999999
Q ss_pred hhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE----------cC-----------CCC
Q 015093 300 RSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----------YD-----------LPT 358 (413)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~----------~~-----------~~~ 358 (413)
++.++.+..+||++++.+ |.++..+|||||+++++|+|+| ++.||+ ++ .|.
T Consensus 417 ~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~ 488 (666)
T 3o8b_A 417 SGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ 488 (666)
T ss_dssp HTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC
T ss_pred HhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC
Confidence 999999999999998764 4566679999999999999997 999984 45 789
Q ss_pred ChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 359 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
|..+|+||+||+|| |++|. +.|+++.+...
T Consensus 489 s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 489 DAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp BHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 99999999999999 89999 89988765433
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=297.74 Aligned_cols=297 Identities=17% Similarity=0.193 Sum_probs=196.3
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ 152 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
.+.+|+++++++|||||||++++++++..+... +.+++|++||++|+.|+++.++.+ .+....+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~~---- 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFSA---- 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEeccccee----
Confidence 567899999999999999999989888866543 458999999999999999887744 22222221100
Q ss_pred HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC-CCCceEEEEeeeCChhHHHHH
Q 015093 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL-PGKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 153 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~~ 231 (413)
....+.-+-..+.+.+...+. ....+.++++||+||+|++ +..+...+..+.... +.+.+++++|||+++....+.
T Consensus 72 -v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~ 148 (440)
T 1yks_A 72 -HGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFP 148 (440)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred -ccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhh
Confidence 001111223334444433333 2345677999999999987 322222222221111 357899999999976543211
Q ss_pred HHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecC
Q 015093 232 RKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHG 311 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~ 311 (413)
.. ..+.. ......+.. ....+...+.. ..++++|||++++.++.+++.|++.++.+..+||
T Consensus 149 ~~--~~~~~--------------~~~~~~~~~--~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg 209 (440)
T 1yks_A 149 HS--NGEIE--------------DVQTDIPSE--PWNTGHDWILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR 209 (440)
T ss_dssp CC--SSCEE--------------EEECCCCSS--CCSSSCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS
T ss_pred hc--CCCee--------------EeeeccChH--HHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 10 01111 111111110 00111122222 2579999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE-------------------cCCCCChhHHHhhhcccCC
Q 015093 312 DMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------------------YDLPTQPENYLHRIGRSGR 372 (413)
Q Consensus 312 ~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------------------~~~~~s~~~~~Q~~GR~~R 372 (413)
.+|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|.||+||+||
T Consensus 210 ----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 210 ----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp ----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 3588999999999999999999999999999 999986 7779999999999999999
Q ss_pred C-CCcceEEEEe---ccccHHHHHHHHHHhccccccCCcc
Q 015093 373 F-GRKGVAINFV---TRDDDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 373 ~-g~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
. |++|.|++++ ++.+...+..+...+.....++|..
T Consensus 285 ~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 285 NPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp CTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred CCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 7 6899999997 5677777777777665544455443
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-38 Score=295.17 Aligned_cols=275 Identities=20% Similarity=0.216 Sum_probs=193.6
Q ss_pred hhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcch
Q 015093 69 RGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSV 148 (413)
Q Consensus 69 ~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (413)
.....+.+++++++++|||||||++|+++++..+... +.+++|++|+++|+.|+.+.++ +..+....+....
T Consensus 13 ~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~ 84 (459)
T 2z83_A 13 GSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR 84 (459)
T ss_dssp --CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC-----
T ss_pred HHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc
Confidence 3345566788999999999999999999998776532 4589999999999999998876 2233332221110
Q ss_pred HHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-----hccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 149 REDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-----LSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 149 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-----~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
.......+.++|.+.+.+.+... ..+.++++||+||||+. ...++.. . .. .+...+++++|||+
T Consensus 85 -----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~---~-~~-~~~~~~~il~SAT~ 153 (459)
T 2z83_A 85 -----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIA---T-KV-ELGEAAAIFMTATP 153 (459)
T ss_dssp --------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHH---H-HH-HTTSCEEEEECSSC
T ss_pred -----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHH---H-Hh-ccCCccEEEEEcCC
Confidence 01234467788888887766654 45677999999999973 2222111 1 11 13578999999999
Q ss_pred ChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCC
Q 015093 224 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRD 303 (413)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~ 303 (413)
+.....+... ..++..... ..+. .....+...+... .+++||||++++.++.+++.|++.+
T Consensus 154 ~~~~~~~~~~--~~pi~~~~~--------------~~~~--~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g 214 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHDLQD--------------EIPD--RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAG 214 (459)
T ss_dssp TTCCCSSCCC--SSCEEEEEC--------------CCCS--SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT
T ss_pred CcchhhhccC--CCCeEEecc--------------cCCc--chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC
Confidence 8653211110 112211110 0000 0001111223333 5799999999999999999999999
Q ss_pred CeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE--------------------cCCCCChhHH
Q 015093 304 HTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------------------YDLPTQPENY 363 (413)
Q Consensus 304 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~--------------------~~~~~s~~~~ 363 (413)
+.+..+|++ +|.++++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|
T Consensus 215 ~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~ 289 (459)
T 2z83_A 215 KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASA 289 (459)
T ss_dssp CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHH
T ss_pred CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHH
Confidence 999999985 6788899999999999999999999999999 99998 5689999999
Q ss_pred HhhhcccCCCCC-cceEEEEeccc
Q 015093 364 LHRIGRSGRFGR-KGVAINFVTRD 386 (413)
Q Consensus 364 ~Q~~GR~~R~g~-~g~~~~~~~~~ 386 (413)
+||+||+||.|+ +|.|++++...
T Consensus 290 ~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 290 AQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHhccccCCCCCCCCeEEEEEccc
Confidence 999999999987 89999999875
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=315.42 Aligned_cols=333 Identities=17% Similarity=0.120 Sum_probs=229.0
Q ss_pred CCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 61 EKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
..|+|||.+++..+... .+++++++||+|||.+++..+...+..+. ..++||+||+ +|+.||.+++.+.. +..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 37999999999887764 46999999999999999877776654443 3489999999 99999999997654 556
Q ss_pred EEEEECCcchHHHHH--HHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhhhccCcH--HHHHHHHhhCCCC
Q 015093 139 VHACVGGTSVREDQR--ILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEMLSRGFK--DQIYDIFQHLPGK 213 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~--~~~~~~~~~~~~~ 213 (413)
+..+.++........ ......+|+|+|++.+...... ..+....+++||+||||++.+.... .....+.......
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 666655432211110 0112468999999988642111 0112335799999999998654321 1112222222234
Q ss_pred ceEEEEeeeCChh----HHHHHHH----------------------------hcCC-C----------------------
Q 015093 214 IQVGVFSATMPPE----ALEITRK----------------------------FMNK-P---------------------- 238 (413)
Q Consensus 214 ~~~i~lSAT~~~~----~~~~~~~----------------------------~~~~-~---------------------- 238 (413)
.+++++||||..+ ....+.. .... +
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 5699999999531 0010000 0000 0
Q ss_pred -----------------------------EEEEecC---CccccCCceEEEEE---------------------------
Q 015093 239 -----------------------------VRILVKR---DELTLEGIKQFHVN--------------------------- 259 (413)
Q Consensus 239 -----------------------------~~~~~~~---~~~~~~~~~~~~~~--------------------------- 259 (413)
..+.... ..+...........
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARD 466 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhh
Confidence 0000000 00000001111110
Q ss_pred -----------------eCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhh-CCCeeEeecCCCCHHHHHHH
Q 015093 260 -----------------VDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRS-RDHTVSATHGDMDQNSRDII 321 (413)
Q Consensus 260 -----------------~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~ 321 (413)
......+...+..+++...+++++|||+++..++.+++.|.+ .|+.+..+||+++..+|.++
T Consensus 467 ~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~ 546 (968)
T 3dmq_A 467 MLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRA 546 (968)
T ss_dssp HHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHH
T ss_pred hcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 011234678888888888889999999999999999999995 59999999999999999999
Q ss_pred HHHHhcCC--CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHh
Q 015093 322 MREFRSGS--SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFY 398 (413)
Q Consensus 322 ~~~f~~~~--~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 398 (413)
++.|++|+ .+|||||+++++|+|+|++++||++++|+++..|.|++||++|.|+.|.|+++....+......+.+.+
T Consensus 547 l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 547 AAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999998 999999999999999999999999999999999999999999999988776665544333334444444
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=287.57 Aligned_cols=269 Identities=16% Similarity=0.161 Sum_probs=187.7
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL 155 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (413)
+|+++++++|||||||++++++++..+... +.+++|++||++|+.|+.+.++ +..+....++.. ...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~-----~~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ-----SER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc-----ccC
Confidence 368899999999999999988888554432 4589999999999999887764 445555555422 112
Q ss_pred hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhh-CCCCceEEEEeeeCChhHHHHHHHh
Q 015093 156 SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQH-LPGKIQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 156 ~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~-~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (413)
.....+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+... .+.+++++++|||+++.... +
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~----~ 141 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA----F 141 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS----S
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh----h
Confidence 23456778888888776666 455778999999999987 32222222222222 14578999999999864221 1
Q ss_pred cCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCC
Q 015093 235 MNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMD 314 (413)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~ 314 (413)
... ...+.......+. .....+...+... .++++|||++++.++.+++.|++.+..+..+||+
T Consensus 142 ~~~------------~~~i~~~~~~~~~--~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-- 204 (431)
T 2v6i_A 142 PPS------------NSPIIDEETRIPD--KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-- 204 (431)
T ss_dssp CCC------------SSCCEEEECCCCS--SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred cCC------------CCceeeccccCCH--HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc--
Confidence 000 0011111001111 1112222334443 5689999999999999999999999999999997
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCE-----------------EEEcCCCCChhHHHhhhcccCCCCCc-
Q 015093 315 QNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL-----------------VINYDLPTQPENYLHRIGRSGRFGRK- 376 (413)
Q Consensus 315 ~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~g~~- 376 (413)
+|+++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|.||+||+||.|..
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 578899999999999999999999999999 655 46677888999999999999999854
Q ss_pred ceEEEEe
Q 015093 377 GVAINFV 383 (413)
Q Consensus 377 g~~~~~~ 383 (413)
|.++++.
T Consensus 282 ~~~~~~~ 288 (431)
T 2v6i_A 282 GDIYAYS 288 (431)
T ss_dssp CCEEEEC
T ss_pred CeEEEEc
Confidence 4444444
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=286.67 Aligned_cols=312 Identities=15% Similarity=0.169 Sum_probs=216.0
Q ss_pred CCcHHHHhhhhhh----hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPF----CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~----~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+|||.++++.+ ..++++++.++||+|||++++..+.... ......++|||||+ +|+.||.++++++.. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~-~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KENELTPSLVICPL-SVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-HTTCCSSEEEEECS-TTHHHHHHHHHHHCT--TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCCCCEEEEccH-HHHHHHHHHHHHHCC--Cc
Confidence 7999999999876 3577899999999999999876555443 33334589999994 689999999999875 45
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
++...+|+... ......+|+|+||+.+..... +....+++||+||||++.+.. ....+.+..++ ..+.+
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEE
Confidence 66666665421 112357899999999865433 223357999999999986554 23344455554 45789
Q ss_pred EEeeeCChh-HHHH------------------------------------HHHhcCCCEEEEecCC---ccccCCceEEE
Q 015093 218 VFSATMPPE-ALEI------------------------------------TRKFMNKPVRILVKRD---ELTLEGIKQFH 257 (413)
Q Consensus 218 ~lSAT~~~~-~~~~------------------------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 257 (413)
++||||..+ ..++ +...+........... ....+......
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~ 261 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETN 261 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEE
Confidence 999999542 1111 1111111110000000 00111111121
Q ss_pred EEeCc--------------------------------------------------------cccHHHHHHHHHHhc--CC
Q 015093 258 VNVDK--------------------------------------------------------EEWKLDTLCDLYETL--AI 279 (413)
Q Consensus 258 ~~~~~--------------------------------------------------------~~~~~~~l~~~~~~~--~~ 279 (413)
..++. ...+...+.+++... .+
T Consensus 262 v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~ 341 (500)
T 1z63_A 262 VYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEG 341 (500)
T ss_dssp EEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTT
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccC
Confidence 11111 123444455555543 56
Q ss_pred CcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcC-CCe-EEEEeCccccCCCCCCCCEEEEcCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSG-SSR-VLITTDLLARGIDVQQVSLVINYDL 356 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~~~~~G~d~~~~~~vi~~~~ 356 (413)
.++||||++...++.+++.|.+. +..+..+||+++..+|.++++.|+++ ..+ +|++|+++++|+|+|.+++||++++
T Consensus 342 ~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~ 421 (500)
T 1z63_A 342 DKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR 421 (500)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC
T ss_pred CcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCC
Confidence 79999999999999999999885 89999999999999999999999988 455 7899999999999999999999999
Q ss_pred CCChhHHHhhhcccCCCCCcceE--EEEeccccH
Q 015093 357 PTQPENYLHRIGRSGRFGRKGVA--INFVTRDDD 388 (413)
Q Consensus 357 ~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 388 (413)
|+++..+.|++||++|.|+.+.+ +.++.....
T Consensus 422 ~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 422 WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp CSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 99999999999999999976555 555555543
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=254.01 Aligned_cols=211 Identities=31% Similarity=0.423 Sum_probs=192.1
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-----cCcee
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-----SLQCQ 110 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-----~~~~~ 110 (413)
..+..+|+.+++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||||||++|+++++..+... ..+++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 4556889999999999999999999999999999999999999999999999999999999999877532 24568
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 111 ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 111 ~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
++|++|+++|+.|+.+.++++....++.+..+.|+.........+..+++|+|+||+.|.+.+......+.+++++|+||
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 99999999999999999999988889999999999888777777777899999999999999988888888899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
||++.+.++...+..++..++++.+++++|||+++....+...++.++..+.....
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999988877554
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=245.35 Aligned_cols=202 Identities=39% Similarity=0.644 Sum_probs=183.9
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46899999999999999999999999999999999999999999999999999999999988876666678999999999
Q ss_pred HHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC
Q 015093 120 LAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG 198 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~ 198 (413)
|+.|+.+.++++.... +..+....|+.............++|+|+||+.+...+......+.+++++|+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999998776 788888999888766666666788999999999999998877778889999999999998888
Q ss_pred cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEE
Q 015093 199 FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (413)
+...+..++..++++.+++++|||+++....+...++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999899999999999999999999999888654
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=250.90 Aligned_cols=215 Identities=60% Similarity=0.911 Sum_probs=183.4
Q ss_pred ccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCcee
Q 015093 31 FFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQ 110 (413)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~ 110 (413)
....+.....+|+.+++++.+.+.+..+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+
T Consensus 5 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~ 84 (224)
T 1qde_A 5 IQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ 84 (224)
T ss_dssp CCBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCC
T ss_pred cccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCce
Confidence 34456667788999999999999999999999999999999999999999999999999999999999988876666679
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 111 ALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 111 ~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
++|++|+++|+.|+.+.++++....+..+....|+.........+. .++|+|+||+.+...+......+.+++++|+||
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 9999999999999999999998888889999888876555444433 389999999999999988877788899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC
Q 015093 191 ADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246 (413)
Q Consensus 191 ~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
||++.+.++...+..++..++...+++++|||+++....+...++.++..+.....
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99998888999999999999989999999999999999999999999887665443
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=252.12 Aligned_cols=208 Identities=33% Similarity=0.521 Sum_probs=188.7
Q ss_pred cccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc
Q 015093 36 DEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA 115 (413)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~ 115 (413)
.+...+|+++++++.+.+.++.+|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999998877666566899999
Q ss_pred ccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhh
Q 015093 116 PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 116 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~ 194 (413)
|+++|+.|+.+.++++....+..+..+.|+............+++|+|+||++|.+.+.. ....+..++++|+||||++
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 999999999999999988888999999999887766666677899999999999998876 4556788999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 195 LSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
.+.++...+..++..++.+.+++++|||+++....+.+.++.+|..+..
T Consensus 199 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9989999999999999989999999999999999999999999887654
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=252.71 Aligned_cols=215 Identities=68% Similarity=1.038 Sum_probs=178.4
Q ss_pred CcccccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCc
Q 015093 29 QDFFVSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQ 108 (413)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~ 108 (413)
......+.++..+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+
T Consensus 19 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~ 98 (237)
T 3bor_A 19 GVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKE 98 (237)
T ss_dssp --------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCS
T ss_pred CcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 34444566677889999999999999999999999999999999999999999999999999999999999988765556
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhc-CCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA-GVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
.+++|++|+++|+.|+.+.+++++...+..+....|+............ .++|+|+||+.+.+.+......+.++++||
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 7999999999999999999999988778888888888765554433333 489999999999999988777788899999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
+||||++.+.++...+..+++.++...+++++|||+++....+...++.+|..+..
T Consensus 179 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 179 LDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred ECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99999998888999999999999989999999999999999999999998876644
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=248.01 Aligned_cols=206 Identities=33% Similarity=0.514 Sum_probs=183.1
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||++++++++..+.....+.+++|++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 56889999999999999999999999999999999999999999999999999999999998876666679999999999
Q ss_pred HHHHHHHHHHHhhccc----CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 120 LAQQIEKVMRALGDYM----GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
|+.|+.+.++++.... +..+..+.|+.............++|+|+||+.+.+.+......+..++++|+||||++.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 9999999999988766 678888888876554433334567999999999999998877777889999999999999
Q ss_pred ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEecC
Q 015093 196 SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKR 245 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 245 (413)
+.++...+..++..++.+.+++++|||+++...++.+.++.+|..+....
T Consensus 164 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 164 DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 88899999999999988999999999999999999999999998765543
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=245.06 Aligned_cols=205 Identities=41% Similarity=0.630 Sum_probs=180.9
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
....+|+.+++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++|+++++..+.....+.+++|++|
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 34577999999999999999999999999999999999999999999999999999999999988866655679999999
Q ss_pred cHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 117 TRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
+++|+.|+.+.++++.... ++++..+.|+.....+.... ..++|+|+||+.+...+......+.+++++|+||||++.
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~ 179 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLL 179 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhh
Confidence 9999999999999987665 78888999988766655444 468999999999999988877777889999999999998
Q ss_pred ccC-cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 196 SRG-FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
+.+ +...+..++..++...+++++|||+++........++.++..+.
T Consensus 180 ~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 180 EEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp STTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred cCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 876 89999999999998899999999999998888888888887654
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=250.03 Aligned_cols=217 Identities=32% Similarity=0.513 Sum_probs=185.0
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---------Cc
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---------LQ 108 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---------~~ 108 (413)
+..+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||++++++++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 457799999999999999999999999999999999999999999999999999999999988765322 34
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEE
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVL 188 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIi 188 (413)
++++|++|+++|+.|+.+.++++....+..+..+.|+............+++|+|+||+.|...+......+.+++++|+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 58999999999999999999999888888899999988877776666778899999999999999888777888999999
Q ss_pred ccchhhhccCcHHHHHHHHhh--CCC--CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCce
Q 015093 189 DEADEMLSRGFKDQIYDIFQH--LPG--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIK 254 (413)
Q Consensus 189 DE~h~~~~~~~~~~~~~~~~~--~~~--~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (413)
||||++.+.++...+..++.. .+. +.+++++|||+++....+...++.++..+.........+.+.
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 250 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIK 250 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC----------
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCce
Confidence 999999988899999999885 343 678999999999999999999999998887766554444433
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=276.70 Aligned_cols=282 Identities=17% Similarity=0.206 Sum_probs=206.2
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ 152 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
..+++++++++||||||||..++..+. ... ..+|++|+++|+.|+++.+++. +..+..++|+......
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al~~l~----~~~---~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~- 218 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAIQKYF----SAK---SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ- 218 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHH----HSS---SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS-
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHH----hcC---CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec-
Confidence 345788999999999999985443333 222 4599999999999999998885 6788888888653100
Q ss_pred HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHH
Q 015093 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 153 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~ 231 (413)
.-....+++++|++.+. ....++++|+||+|++.+.++...+..++..++ ...+++++|||. +....+.
T Consensus 219 -TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~ 288 (677)
T 3rc3_A 219 -PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELM 288 (677)
T ss_dssp -TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHH
T ss_pred -CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHH
Confidence 00012578888876542 235579999999999988889988888888887 678899999995 2333333
Q ss_pred HHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecC
Q 015093 232 RKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHG 311 (413)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~ 311 (413)
.. .+....+...... .... ..... + ..+.... +..+|||++++.++.+++.|.+.++.+..+||
T Consensus 289 ~~-~~~~~~v~~~~r~---~~l~---~~~~~----l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG 352 (677)
T 3rc3_A 289 YT-TGEEVEVRDYKRL---TPIS---VLDHA----L----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYG 352 (677)
T ss_dssp HH-HTCCEEEEECCCS---SCEE---ECSSC----C----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCEEECT
T ss_pred Hh-cCCceEEEEeeec---chHH---HHHHH----H----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeec
Confidence 33 2344433221110 0100 00000 0 0111222 35588899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhc--CCCeEEEEeCccccCCCCCCCCEEEEcCC--------------CCChhHHHhhhcccCCCCC
Q 015093 312 DMDQNSRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL--------------PTQPENYLHRIGRSGRFGR 375 (413)
Q Consensus 312 ~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~G~d~~~~~~vi~~~~--------------~~s~~~~~Q~~GR~~R~g~ 375 (413)
++++.+|.++++.|++ |..+|||||+++++|+|+ .++.||+++. |.|..+|.||+||+||.|.
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTS
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCC
Confidence 9999999999999999 889999999999999999 8999999998 7799999999999999986
Q ss_pred c---ceEEEEeccccHHHHHHH
Q 015093 376 K---GVAINFVTRDDDRMLADI 394 (413)
Q Consensus 376 ~---g~~~~~~~~~~~~~~~~~ 394 (413)
. |.|++++.. +...+..+
T Consensus 432 ~g~~G~v~~l~~~-d~~~~~~~ 452 (677)
T 3rc3_A 432 RFKEGEVTTMNHE-DLSLLKEI 452 (677)
T ss_dssp SCSSEEEEESSTT-HHHHHHHH
T ss_pred CCCCEEEEEEecc-hHHHHHHH
Confidence 4 666665543 33333333
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=244.45 Aligned_cols=207 Identities=30% Similarity=0.430 Sum_probs=178.5
Q ss_pred ccccccCccC-CCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc------cC
Q 015093 35 YDEVYDSFDS-MGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE------SL 107 (413)
Q Consensus 35 ~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~------~~ 107 (413)
..++..+|++ +++++.+.+.+.+.|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+... ..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 3445567777 7999999999999999999999999999999999999999999999999999998876432 24
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEE
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFV 187 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iI 187 (413)
+++++|++|+++|+.|+.+.++++. ..+..+..+.|+............+++|+|+||+.+.+.+......+.+++++|
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 5689999999999999999999986 457788888888877766666777899999999999999988888888899999
Q ss_pred EccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 188 LDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 188 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
+||||++.+.++...+..++..++.+.+++++|||+++....+...++.+|..+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999887654
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=285.51 Aligned_cols=331 Identities=18% Similarity=0.208 Sum_probs=232.0
Q ss_pred CCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|++||.+++..+. .++++|+..+||+|||++++..+...+.......++||||| .+++.||.+++.+++. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 79999999998665 68889999999999999987777665544444558999999 6789999999999975 56
Q ss_pred eEEEEECCcchHHHHHH------------HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHH
Q 015093 138 KVHACVGGTSVREDQRI------------LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYD 205 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~------------~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 205 (413)
.+...+|+......... .....+|+|+|++++...... +....+++||+||||++.+.. .....
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHH
Confidence 67777776654333221 123568999999999764332 112347899999999985543 34445
Q ss_pred HHhhCCCCceEEEEeeeCChh----HHHHHHHhcCC-----------------------------CEEEEecCCc--ccc
Q 015093 206 IFQHLPGKIQVGVFSATMPPE----ALEITRKFMNK-----------------------------PVRILVKRDE--LTL 250 (413)
Q Consensus 206 ~~~~~~~~~~~i~lSAT~~~~----~~~~~~~~~~~-----------------------------~~~~~~~~~~--~~~ 250 (413)
.+..+. ....+++||||..+ +..++..+... +......... ...
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 555564 45678899999421 11111111100 0000000000 001
Q ss_pred CCceEEEEEeCc--------------------------------------------------------------------
Q 015093 251 EGIKQFHVNVDK-------------------------------------------------------------------- 262 (413)
Q Consensus 251 ~~~~~~~~~~~~-------------------------------------------------------------------- 262 (413)
+........+..
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 111111111100
Q ss_pred ------cccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC---e
Q 015093 263 ------EEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS---R 331 (413)
Q Consensus 263 ------~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~ 331 (413)
...+...+..++... .+.++|||++....+..+.+.|...|+.+..++|+++..+|.++++.|+++.. .
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v 627 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFV 627 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCC
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceE
Confidence 123455566666654 45699999999999999999999999999999999999999999999998654 4
Q ss_pred EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEeccccH--HHHHHHHHHhcc
Q 015093 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDD--RMLADIQRFYNV 400 (413)
Q Consensus 332 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~--~~~~~~~~~~~~ 400 (413)
+|++|.++++|+|++.+++||++++++++..+.|++||++|.|+. ..++.+++.... ..+....+.+..
T Consensus 628 ~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 628 FLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp EEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred EEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999875 445666666643 344444444443
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=237.65 Aligned_cols=201 Identities=38% Similarity=0.554 Sum_probs=179.7
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEccc
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPT 117 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~ 117 (413)
+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58889999999999999999999999999999999999999999999999999999999887542 335689999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+.|+.+.++++... .++..+.|+............+++|+|+||+.+.+.+......+.+++++|+||||++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998764 6777888888776666666667899999999999999887777888999999999999888
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
++...+..++...+.+.+++++|||+++....+.+.++.+|..+..
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 8999999999999889999999999999999999999998876643
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=240.14 Aligned_cols=204 Identities=42% Similarity=0.637 Sum_probs=180.0
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+.....+.+++|++|++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 35699999999999999999999999999999999999999999999999999999999998887665566899999999
Q ss_pred HHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 119 ELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILS-AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
+|+.|+.+.++++.... +.++..+.|+.....+...+. ..++|+|+||+.+...+......+.+++++|+||||++.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 99999999999998765 788889998877665554443 4569999999999999988877788899999999999876
Q ss_pred -cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 197 -RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 197 -~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
.++...+..++...+.+.+++++|||+++...++.+.++.+|..+.
T Consensus 173 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 173 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred ccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 4677888888888888899999999999999999999998887653
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=271.64 Aligned_cols=320 Identities=17% Similarity=0.156 Sum_probs=218.4
Q ss_pred CCcHHHHhhhhhhh---------CCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEEcccHHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFC---------KGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~---------~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
.|+|||.+++..+. .++.+|+..+||+|||++++..+...+.... ...++|||||+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999998874 3456999999999999998877766554332 23469999997 8899999999
Q ss_pred HHhhcccCceEEEEECCcchHHHHHH---Hh-----cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH
Q 015093 129 RALGDYMGVKVHACVGGTSVREDQRI---LS-----AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 200 (413)
.++... ...+..+.++......... .. ...+|+|+|++.+..... .+....+++||+||||++.+.. .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-h
Confidence 999765 4455555555433222111 11 146899999999875432 2334468999999999986543 2
Q ss_pred HHHHHHHhhCCCCceEEEEeeeCChhH-------------------HHHHHHhcC-------------------------
Q 015093 201 DQIYDIFQHLPGKIQVGVFSATMPPEA-------------------LEITRKFMN------------------------- 236 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~lSAT~~~~~-------------------~~~~~~~~~------------------------- 236 (413)
.....+..+. ..+.+++||||..+. ..+...+..
T Consensus 210 -~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 210 -QTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp -HHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 2233333443 456899999995321 000000000
Q ss_pred ----CCEEEEecCCc--cccCCceEEEEEeC-------------------------------------------------
Q 015093 237 ----KPVRILVKRDE--LTLEGIKQFHVNVD------------------------------------------------- 261 (413)
Q Consensus 237 ----~~~~~~~~~~~--~~~~~~~~~~~~~~------------------------------------------------- 261 (413)
.+....-.... ...+........+.
T Consensus 288 ~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 288 ISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp HHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHH
Confidence 00000000000 00011111111000
Q ss_pred ----------------------------ccccHHHHHHHHHHh---cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeec
Q 015093 262 ----------------------------KEEWKLDTLCDLYET---LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATH 310 (413)
Q Consensus 262 ----------------------------~~~~~~~~l~~~~~~---~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~ 310 (413)
....+...+..++.. ..+.++|||++....++.+.+.|...++.+..+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~ 447 (644)
T 1z3i_X 368 EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447 (644)
T ss_dssp HHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEe
Confidence 012233334444433 3567999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCe---EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc--eEEEEecc
Q 015093 311 GDMDQNSRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTR 385 (413)
Q Consensus 311 ~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~ 385 (413)
|+++..+|.++++.|+++... +|++|.++++|+|++.+++||++++++++..+.|++||++|.|+.. .++.+++.
T Consensus 448 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~ 527 (644)
T 1z3i_X 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST 527 (644)
T ss_dssp SSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEEC
Confidence 999999999999999998754 8899999999999999999999999999999999999999999765 45556666
Q ss_pred ccH
Q 015093 386 DDD 388 (413)
Q Consensus 386 ~~~ 388 (413)
...
T Consensus 528 ~ti 530 (644)
T 1z3i_X 528 GTI 530 (644)
T ss_dssp TSH
T ss_pred CCH
Confidence 543
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=240.11 Aligned_cols=206 Identities=29% Similarity=0.472 Sum_probs=180.3
Q ss_pred cccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc----cCceeEEE
Q 015093 38 VYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE----SLQCQALV 113 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~----~~~~~~lv 113 (413)
...+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++++++++..+... ..+.+++|
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 45679999999999999999999999999999999999999999999999999999999998876431 23568999
Q ss_pred EcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcC-CCCCCCccEEEEccch
Q 015093 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQ-SLRPDYIRMFVLDEAD 192 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~~iIiDE~h 192 (413)
++|+++|+.|+.+.+++++...+..+..++|+.......... ..++|+|+||+.+...+... ...+.+++++|+||||
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 181 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD 181 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH
Confidence 999999999999999999888888999999988766555444 46899999999999888764 4567789999999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEec
Q 015093 193 EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVK 244 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (413)
++.+.++...+..++..++...+++++|||+++....+.+.++.+|..+...
T Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 182 RILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999889999999999999899999999999999999999999988876543
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=256.52 Aligned_cols=322 Identities=17% Similarity=0.205 Sum_probs=233.6
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|. .|++.|.-+.-.+..|+ |..+.||+|||+++.+|++-.... +..+.|++|+..||.|-.+.+..+...+|+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 354 79999999998888887 999999999999999988643333 347999999999999999999999999999
Q ss_pred eEEEEECCc------------------------------------------------chHHHHHHHhcCCcEEEeChHHH
Q 015093 138 KVHACVGGT------------------------------------------------SVREDQRILSAGVHVVVGTPGRV 169 (413)
Q Consensus 138 ~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~Iii~T~~~l 169 (413)
+++++.... ......+...-.|+|+++|...|
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 999988721 00011111122479999999988
Q ss_pred H-HHHHcC------CCCCCCccEEEEccchhhh-ccC---------------cHHHHHHHHhhC----------------
Q 015093 170 F-DMLRRQ------SLRPDYIRMFVLDEADEML-SRG---------------FKDQIYDIFQHL---------------- 210 (413)
Q Consensus 170 ~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~---------------~~~~~~~~~~~~---------------- 210 (413)
- +.++.. ......+.+.|+||++.++ +.. ....+..+...+
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 4 444422 2224557899999999754 210 000111111110
Q ss_pred ----------------------------------------CCC-------------------------------------
Q 015093 211 ----------------------------------------PGK------------------------------------- 213 (413)
Q Consensus 211 ----------------------------------------~~~------------------------------------- 213 (413)
..+
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence 000
Q ss_pred ------------------------ceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHH
Q 015093 214 ------------------------IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDT 269 (413)
Q Consensus 214 ------------------------~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (413)
.++.+||||.......+...|. -.+... +...+................+...
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~-l~vv~I--Ptnkp~~R~d~~d~vy~t~~eK~~a 462 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG-MEVVVI--PTHKPMIRKDHDDLVFRTQKEKYEK 462 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC-CCEEEC--CCSSCCCCEECCCEEESSHHHHHHH
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC-CeEEEE--CCCCCcceeecCcEEEecHHHHHHH
Confidence 4799999999887766655554 333222 2222222222212233444667788
Q ss_pred HHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC-
Q 015093 270 LCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ- 346 (413)
Q Consensus 270 l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~- 346 (413)
+...+... .+.++||||+|++.++.+++.|++.|+++..+||+....++..+...++.| .|+|||+++++|+|++
T Consensus 463 l~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~l 540 (822)
T 3jux_A 463 IVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKL 540 (822)
T ss_dssp HHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCC
T ss_pred HHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccC
Confidence 88777653 567999999999999999999999999999999996666665555666555 6999999999999998
Q ss_pred -------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHH
Q 015093 347 -------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390 (413)
Q Consensus 347 -------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 390 (413)
+..+||+++.|.|...|.|++||+||.|.+|.+++|++..|..+
T Consensus 541 g~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 541 GPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp CTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred CcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 66799999999999999999999999999999999999887543
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=282.71 Aligned_cols=310 Identities=14% Similarity=0.116 Sum_probs=206.6
Q ss_pred CCcHHHHhhhhhhhC--------------CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFCK--------------GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~--------------~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
.||++|..+++.+.. +++++++++||||||+++ +++...+.......++||+||+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 699999999998765 367999999999999998 44445444333345899999999999999999
Q ss_pred HHHhhcccCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHHcCC-C-CCCCccEEEEccchhhhccCcHHHHH
Q 015093 128 MRALGDYMGVKVHACVGGTSVREDQRIL-SAGVHVVVGTPGRVFDMLRRQS-L-RPDYIRMFVLDEADEMLSRGFKDQIY 204 (413)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~-~-~~~~~~~iIiDE~h~~~~~~~~~~~~ 204 (413)
+.++.... ..++.+.......+ ....+|+|+|+++|...+.... . .+..+.+||+||||++... ....
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~ 420 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQK 420 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHH
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHH
Confidence 99876431 12333333333333 3468999999999998776432 1 2345789999999997532 3345
Q ss_pred HHHhhCCCCceEEEEeeeCChhHH----HHHHHhcCCCEEEEecCC----ccccCCceEEEEEe-----------C----
Q 015093 205 DIFQHLPGKIQVGVFSATMPPEAL----EITRKFMNKPVRILVKRD----ELTLEGIKQFHVNV-----------D---- 261 (413)
Q Consensus 205 ~~~~~~~~~~~~i~lSAT~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------~---- 261 (413)
.+...++ +.+++++||||..... .....+++.++....... .... .+...+... +
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~e~d~~~~ 498 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL-KFKVDYNDVRPQFKSLETETDEKKL 498 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC-CEEEEECCCCGGGHHHHTCCCHHHH
T ss_pred HHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC-CeEEEEEeccchhhhccccccHHHH
Confidence 6666776 4789999999974321 122334444433221110 0000 000000000 0
Q ss_pred ---------ccccHHHHHHH-HHH---hc--------CCCcEEEEEcCcccHHHHHHHHhhCC------------Cee-E
Q 015093 262 ---------KEEWKLDTLCD-LYE---TL--------AITQSVIFVNTRRKVDWLTDQMRSRD------------HTV-S 307 (413)
Q Consensus 262 ---------~~~~~~~~l~~-~~~---~~--------~~~~~lIf~~~~~~a~~l~~~l~~~~------------~~~-~ 307 (413)
........+.. ++. .. .+.++||||++++.|..+++.|.+.+ .++ .
T Consensus 499 ~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 499 SAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 01112222222 222 11 23579999999999999999997643 444 4
Q ss_pred eecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCeEEEEeCc
Q 015093 308 ATHGD----------M----------DQ-----------------------------NSRDIIMREFRSGSSRVLITTDL 338 (413)
Q Consensus 308 ~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~~~~~vli~t~~ 338 (413)
.+|+. + ++ .+|..+++.|++|+++|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 45542 1 21 13778899999999999999999
Q ss_pred cccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc----ceEEEEec
Q 015093 339 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK----GVAINFVT 384 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~----g~~~~~~~ 384 (413)
+.+|+|+|.+ +++.++.|.+...|+|++||++|.++. |.++.|+.
T Consensus 659 lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999 567788999999999999999998753 55554443
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=242.21 Aligned_cols=199 Identities=30% Similarity=0.486 Sum_probs=174.8
Q ss_pred cCccCCC--CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc----cCceeEEE
Q 015093 40 DSFDSMG--LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE----SLQCQALV 113 (413)
Q Consensus 40 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~----~~~~~~lv 113 (413)
.+|+.++ +++.+.+.+...|+..|+++|.++++.+..++++++++|||||||++|+++++..+... ..+.+++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 4566665 99999999999999999999999999999999999999999999999999999876542 23568999
Q ss_pred EcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC-CCCCCccEEEEccch
Q 015093 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS-LRPDYIRMFVLDEAD 192 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~iIiDE~h 192 (413)
++|+++|+.|+.+.+++++...+..+..+.|+.........+..+++|+|+||+++...+.... ..+.++++||+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 9999999999999999999888899999999988777766666778999999999998887653 667889999999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCC
Q 015093 193 EMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~ 238 (413)
++.+.++...+..++..++...+++++|||+++....+.+.++..+
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999888887654
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=246.18 Aligned_cols=203 Identities=37% Similarity=0.592 Sum_probs=179.6
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..+|+.+++++.+.+.+..+||..|+++|.++++.++.+ +++++++|||||||++|+++++..+.....++++||++|
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~P 170 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcC
Confidence 578999999999999999999999999999999999997 899999999999999999999999887776779999999
Q ss_pred cHHHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHc-CCCCCCCccEEEEccchhh
Q 015093 117 TRELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRR-QSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~ 194 (413)
+++|+.|+.+.++++.... ++.+....++....... ...++|+|+||++|.+++.+ ..+.+.+++++|+||||++
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHH
Confidence 9999999999999988764 67788887776533221 34678999999999999966 4566788999999999998
Q ss_pred hc-cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEec
Q 015093 195 LS-RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVK 244 (413)
Q Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (413)
.+ .++...+..+++.++..+|++++|||+++....+...++.+|..+...
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred hhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 87 678888999999999999999999999999999999999999877654
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-32 Score=233.88 Aligned_cols=210 Identities=26% Similarity=0.452 Sum_probs=174.0
Q ss_pred ccccCccCC----CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeE
Q 015093 37 EVYDSFDSM----GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQA 111 (413)
Q Consensus 37 ~~~~~~~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~ 111 (413)
.+..+|+.+ ++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||++|+++++..+... ..+.++
T Consensus 22 ~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 101 (245)
T 3dkp_A 22 DPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRA 101 (245)
T ss_dssp CCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCE
T ss_pred CcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceE
Confidence 344566665 899999999999999999999999999999999999999999999999999999877542 345689
Q ss_pred EEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH-HHHhcCCcEEEeChHHHHHHHHcC--CCCCCCccEEEE
Q 015093 112 LVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ-RILSAGVHVVVGTPGRVFDMLRRQ--SLRPDYIRMFVL 188 (413)
Q Consensus 112 lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~T~~~l~~~~~~~--~~~~~~~~~iIi 188 (413)
+|++|+++|+.|+.+.++++....+..+..+.++....... .....+++|+|+||+.+...+... ...+.+++++|+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 102 LIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 99999999999999999999888888887777654322211 112346799999999999998876 456778999999
Q ss_pred ccchhhhc---cCcHHHHHHHHhhCC-CCceEEEEeeeCChhHHHHHHHhcCCCEEEEecCC
Q 015093 189 DEADEMLS---RGFKDQIYDIFQHLP-GKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246 (413)
Q Consensus 189 DE~h~~~~---~~~~~~~~~~~~~~~-~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 246 (413)
||||++.+ .++...+..++.... .+.+++++|||+++....+.+.++.++..+.....
T Consensus 182 DEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred eChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999887 467778888876654 47899999999999999999999999988876543
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=226.52 Aligned_cols=318 Identities=18% Similarity=0.172 Sum_probs=232.2
Q ss_pred CCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 58 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 58 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
.|+ .|+++|..+++.++.|+ +..+.||+|||+++.+|++..... +..++|++||+.|+.|.++.+..+...+++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 688 99999999999999998 999999999999999999543332 347999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHHcC------CCCCC---CccEEEEccchhhh-ccCc-------
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRV-FDMLRRQ------SLRPD---YIRMFVLDEADEML-SRGF------- 199 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~------~~~~~---~~~~iIiDE~h~~~-~~~~------- 199 (413)
++.++.|+...... .....++|+|+||+.| ++++... ...+. .+.++|+||+|.++ +...
T Consensus 150 sv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISg 227 (997)
T 2ipc_A 150 SVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISG 227 (997)
T ss_dssp CEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEE
T ss_pred eEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeC
Confidence 99999999874333 3334689999999999 7777654 24456 78999999999876 2110
Q ss_pred --------HHHHHHHHhhCCC--------------C--------------------------------------------
Q 015093 200 --------KDQIYDIFQHLPG--------------K-------------------------------------------- 213 (413)
Q Consensus 200 --------~~~~~~~~~~~~~--------------~-------------------------------------------- 213 (413)
...+..+...++. .
T Consensus 228 p~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~A 307 (997)
T 2ipc_A 228 PAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQA 307 (997)
T ss_dssp SCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHH
Confidence 0111222221110 0
Q ss_pred -----------------------------------------------------------------------ceEEEEeee
Q 015093 214 -----------------------------------------------------------------------IQVGVFSAT 222 (413)
Q Consensus 214 -----------------------------------------------------------------------~~~i~lSAT 222 (413)
.++.+||+|
T Consensus 308 LrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGT 387 (997)
T 2ipc_A 308 IRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGT 387 (997)
T ss_dssp HHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESS
T ss_pred HHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCC
Confidence 378999999
Q ss_pred CChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHh
Q 015093 223 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMR 300 (413)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~ 300 (413)
......++...|..+ +...+ ...+......-...+.....+..++..-+... .+.|+||+|.|++..+.+++.|+
T Consensus 388 A~tE~~Ef~~iY~l~-Vv~IP--Tn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 388 AKTEEKEFQEIYGMD-VVVVP--TNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp CGGGHHHHHHHHCCC-EEECC--CSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhCCC-EEEcC--CCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 987766655555444 32222 22222222333333455566666666544433 56799999999999999999998
Q ss_pred ----------------------------------------------------------------------------hCCC
Q 015093 301 ----------------------------------------------------------------------------SRDH 304 (413)
Q Consensus 301 ----------------------------------------------------------------------------~~~~ 304 (413)
+.|+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI 544 (997)
T 2ipc_A 465 EPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGI 544 (997)
T ss_dssp CGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCC
Confidence 4567
Q ss_pred eeEeecCCCCHHHHHHHHHHHhcCC-CeEEEEeCccccCCCCCCC-------------------C---------------
Q 015093 305 TVSATHGDMDQNSRDIIMREFRSGS-SRVLITTDLLARGIDVQQV-------------------S--------------- 349 (413)
Q Consensus 305 ~~~~~~~~~~~~~r~~~~~~f~~~~-~~vli~t~~~~~G~d~~~~-------------------~--------------- 349 (413)
+..++++.....+. +++. +.|. ..|.|||+++++|.|+.-- .
T Consensus 545 ~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (997)
T 2ipc_A 545 PHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKE 621 (997)
T ss_dssp CCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCH
T ss_pred CeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccch
Confidence 77778877543333 3333 3343 4588999999999998522 1
Q ss_pred ----------------------------------------EEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 350 ----------------------------------------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 350 ----------------------------------------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
+||-...+.|...-.|.-||+||.|.+|...+|++-.|.-
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDdL 701 (997)
T 2ipc_A 622 EEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDL 701 (997)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSHH
T ss_pred hhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChHH
Confidence 6787888889999999999999999999999999877653
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=198.87 Aligned_cols=162 Identities=64% Similarity=1.019 Sum_probs=147.5
Q ss_pred CceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCe
Q 015093 252 GIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR 331 (413)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 331 (413)
.+.+.+..++....+...+..+++....+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 46677777776566999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhc
Q 015093 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVAD 411 (413)
Q Consensus 332 vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (413)
|||+|+++++|+|+|++++||+++.|++...|.||+||+||.|++|.|++++++.+...+..+.+++...++++|.++.+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 162 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cC
Q 015093 412 LI 413 (413)
Q Consensus 412 ~~ 413 (413)
++
T Consensus 163 ~~ 164 (165)
T 1fuk_A 163 LL 164 (165)
T ss_dssp TT
T ss_pred hc
Confidence 64
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=192.45 Aligned_cols=158 Identities=41% Similarity=0.641 Sum_probs=147.0
Q ss_pred cccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc
Q 015093 248 LTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS 327 (413)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
..++.+.+.+...+. ..+...+..++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 345567777777665 6789999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q 015093 328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++++.+.+...+..+.++++..++.++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887664
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=196.88 Aligned_cols=164 Identities=45% Similarity=0.776 Sum_probs=149.3
Q ss_pred cccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc
Q 015093 248 LTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS 327 (413)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
..+..+.+.+..++....+...+..+++....+++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34567888888888766799999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccCCCCCCCCEEEEcCCC------CChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccc
Q 015093 328 GSSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVV 401 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 401 (413)
|+.+|||||+++++|+|+|.+++||+++.| .+...|.||+||+||.|++|.+++++.+.+...+..+.+.++..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cccCCcchhc
Q 015093 402 IEELPANVAD 411 (413)
Q Consensus 402 ~~~~~~~~~~ 411 (413)
++.+|..-.+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 8888776544
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-26 Score=225.24 Aligned_cols=129 Identities=23% Similarity=0.320 Sum_probs=113.5
Q ss_pred cHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 265 WKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
.....+...+... .+.++||||+++..++.+++.|.+.|+.+..+||++++.+|.++++.|++|+.+|||||+++++|
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~G 502 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 502 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcC
Confidence 3444444444332 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCC-----CCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 343 IDVQQVSLVINYDL-----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 343 ~d~~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
+|+|++++||+++. |.|..+|+||+||+||.+ +|.++++++..+..+...+
T Consensus 503 lDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 503 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred ccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 99999999999997 889999999999999985 7999999998776554444
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=198.41 Aligned_cols=178 Identities=27% Similarity=0.436 Sum_probs=145.8
Q ss_pred HhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCC
Q 015093 233 KFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD 312 (413)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~ 312 (413)
.++.+|..+.+.........+.+.+..++. ..+...+..++... .+++||||++++.++.+++.|+..++.+..+||+
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp ------------------CCSEEEEEECCG-GGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 455666666666666667788888877665 57888888888775 4689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHH
Q 015093 313 MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRML 391 (413)
Q Consensus 313 ~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~ 391 (413)
+++.+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|++|.+++++++. +....
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~ 167 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVL 167 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976 78889
Q ss_pred HHHHHHhccccccCCcchhcc
Q 015093 392 ADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~ 412 (413)
..+.+.+....+.+|.++.++
T Consensus 168 ~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 168 MDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp HHHHHHHHHTTCCCCHHHHST
T ss_pred HHHHHHHHHccCcCCHHHHhh
Confidence 999999999999999988765
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=192.86 Aligned_cols=159 Identities=36% Similarity=0.666 Sum_probs=144.9
Q ss_pred cCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCC
Q 015093 250 LEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS 329 (413)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 329 (413)
+..+.+.+..++. ..+...+..+++....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCG-GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECCh-HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 3466777776665 679999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcc
Q 015093 330 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 330 ~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
.+|||||+++++|+|+|++++||++++|+|...|.||+||+||.|+.|.+++++++. +...+..+.+.+...++.+|.+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999999876 5678899999999999999876
Q ss_pred h
Q 015093 409 V 409 (413)
Q Consensus 409 ~ 409 (413)
+
T Consensus 162 ~ 162 (172)
T 1t5i_A 162 I 162 (172)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=196.25 Aligned_cols=165 Identities=33% Similarity=0.536 Sum_probs=138.3
Q ss_pred ccccCCceEEEEEeCccccHHHHHHHHHHhc-CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHH
Q 015093 247 ELTLEGIKQFHVNVDKEEWKLDTLCDLYETL-AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREF 325 (413)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 325 (413)
....+.+.+.+..++. ..+...|..+++.. ..+++||||++++.++.+++.|...++.+..+||++++.+|.++++.|
T Consensus 14 ~~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 3445678888887765 57888999999887 567999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccC
Q 015093 326 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEEL 405 (413)
Q Consensus 326 ~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.|++++++.+...+..+.++++...+.+
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhcc
Q 015093 406 PANVADL 412 (413)
Q Consensus 406 ~~~~~~~ 412 (413)
|.++.++
T Consensus 173 ~~~l~~~ 179 (185)
T 2jgn_A 173 PSWLENM 179 (185)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9887764
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-26 Score=222.71 Aligned_cols=187 Identities=23% Similarity=0.280 Sum_probs=138.2
Q ss_pred CceEEEEeeeCChhHHHHHHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhc--CCCcEEEEEcCcc
Q 015093 213 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETL--AITQSVIFVNTRR 290 (413)
Q Consensus 213 ~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~ 290 (413)
..+++++|||+++..... ................+. ............+...+... .+.++||||+++.
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~-----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL-----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE-----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe-----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 568899999997543211 122222222111111111 11122233444444444332 4579999999999
Q ss_pred cHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC-----CCChhHHHh
Q 015093 291 KVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLH 365 (413)
Q Consensus 291 ~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-----~~s~~~~~Q 365 (413)
.++.+++.|++.|+.+..+||++++.+|.++++.|++|+.+|||+|+++++|+|+|++++||+++. |.|..+|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred hhcccCCCCCcceEEEEeccccHHHHHH---------HHHHhccccccCCcch
Q 015093 366 RIGRSGRFGRKGVAINFVTRDDDRMLAD---------IQRFYNVVIEELPANV 409 (413)
Q Consensus 366 ~~GR~~R~g~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 409 (413)
|+||+||. .+|.|++++++.+..+... +...++......|...
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~ 588 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTI 588 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCch
Confidence 99999998 7899999999876654443 3445555555555443
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=192.18 Aligned_cols=145 Identities=31% Similarity=0.559 Sum_probs=136.8
Q ss_pred cccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 263 EEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
...+...+..++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|.++++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 36799999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q 015093 343 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPA 407 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
+|+|++++||+++.|++...|.||+||+||.|++|.|++++++.+...+..+.+.++..++.++.
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999988877654
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=195.13 Aligned_cols=154 Identities=31% Similarity=0.530 Sum_probs=138.3
Q ss_pred ceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+.+.+..... ..+...+..+++....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 3445555554 679999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q 015093 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPA 407 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
||||+++++|+|+|++++||+++.|.+...|.||+||+||.|++|.|++++++.+...+..+.+.++..++.++.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988876654
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-27 Score=191.50 Aligned_cols=156 Identities=35% Similarity=0.560 Sum_probs=141.1
Q ss_pred ceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+.+.+...+....+...+..+++....+++||||++++.++.+++.|++.++.+..+||++++.+|.++++.|++|+.+|
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~v 83 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83 (170)
Confidence 34444444444567888888888877789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcc
Q 015093 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPAN 408 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (413)
||||+++++|+|+|++++||+++.|+|...|.||+||+||.|+.|.+++++++.+...+..+.++++..++.++.+
T Consensus 84 LvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 84 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887766543
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-25 Score=186.78 Aligned_cols=165 Identities=15% Similarity=0.117 Sum_probs=117.8
Q ss_pred hCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEcccHHHHHH-HHHHHHHhh
Q 015093 57 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLAPTRELAQQ-IEKVMRALG 132 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~P~~~l~~q-~~~~~~~~~ 132 (413)
......|+++|.++++.+.+++++++.+|||+|||++++.++...+.... .+.+++|++|+++|+.| +.+.+.++.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 34455899999999999999999999999999999999988887664322 24589999999999999 788888876
Q ss_pred cccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCC------CCCCCccEEEEccchhhhccCcHHHH-HH
Q 015093 133 DYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQS------LRPDYIRMFVLDEADEMLSRGFKDQI-YD 205 (413)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~------~~~~~~~~iIiDE~h~~~~~~~~~~~-~~ 205 (413)
.. +..+..+.|+.............++|+|+||+.|...+.... ..+.++++||+||||++.+..+...+ ..
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 667778877765433333333457999999999998887643 45667899999999998765444333 33
Q ss_pred HHhhC-------------CCCceEEEEeee
Q 015093 206 IFQHL-------------PGKIQVGVFSAT 222 (413)
Q Consensus 206 ~~~~~-------------~~~~~~i~lSAT 222 (413)
++... .+.++++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 146899999998
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-24 Score=204.58 Aligned_cols=102 Identities=11% Similarity=0.178 Sum_probs=66.0
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEE--EeCccccCCCCCC----CCEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLI--TTDLLARGIDVQQ----VSLV 351 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli--~t~~~~~G~d~~~----~~~v 351 (413)
..+.+|||++|...++.+++.|+. .. ...++.. .++.++++.|+++. .|++ +|..+.+|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 457899999999999999998865 22 3445543 35788999998864 5777 7799999999997 7889
Q ss_pred EEcCCCCCh------------------------------hHHHhhhcccCCCCCcceEEEEecc
Q 015093 352 INYDLPTQP------------------------------ENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 352 i~~~~~~s~------------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
|+++.|... ..+.|.+||+.|...+.-+++++++
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 999987421 2357999999998655444555543
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-22 Score=191.10 Aligned_cols=308 Identities=16% Similarity=0.129 Sum_probs=195.5
Q ss_pred CCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+||++|.++++. +..++++++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+++..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 699999987764 456899999999999999999999987 2459999999999999999999988776677
Q ss_pred eEEEEECCcch---------------------------------HHHH------------------HHHhcCCcEEEeCh
Q 015093 138 KVHACVGGTSV---------------------------------REDQ------------------RILSAGVHVVVGTP 166 (413)
Q Consensus 138 ~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~Iii~T~ 166 (413)
++..+.|..+. .... +.....++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 77777663321 0000 11234679999999
Q ss_pred HHHHHHHHcCCCCC-CCccEEEEccchhhhccCc----------------------------------------------
Q 015093 167 GRVFDMLRRQSLRP-DYIRMFVLDEADEMLSRGF---------------------------------------------- 199 (413)
Q Consensus 167 ~~l~~~~~~~~~~~-~~~~~iIiDE~h~~~~~~~---------------------------------------------- 199 (413)
+.|++...+..+.. ....++|+||||++.+ ..
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99987754443322 3467999999998765 10
Q ss_pred ---------HHHHH----------------------------HHH----------------------------hhCCCC-
Q 015093 200 ---------KDQIY----------------------------DIF----------------------------QHLPGK- 213 (413)
Q Consensus 200 ---------~~~~~----------------------------~~~----------------------------~~~~~~- 213 (413)
...+. ..+ +.+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 00000 000 001122
Q ss_pred ceEEEEeeeCChhHHHHHHHhcCCC--EEE---Ee-cCCccccCCceEEEEEe--Cc--c---ccHHHHHHHHHHh---c
Q 015093 214 IQVGVFSATMPPEALEITRKFMNKP--VRI---LV-KRDELTLEGIKQFHVNV--DK--E---EWKLDTLCDLYET---L 277 (413)
Q Consensus 214 ~~~i~lSAT~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~~~~~~~~~~~~--~~--~---~~~~~~l~~~~~~---~ 277 (413)
..+|++|||+.+ . +.....++-+ ... .. ....+ .+-...+... +. . ......+.+.+.. .
T Consensus 316 ~svIltSaTL~~-~-~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 316 LSIILMSGTLPP-R-EYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp CEEEEEESSCCC-H-HHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeCCCc-H-HHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 578999999986 3 3333334432 211 00 11112 2222222221 11 0 1122333333322 2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe--CccccCCCCC-----CCCE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT--DLLARGIDVQ-----QVSL 350 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t--~~~~~G~d~~-----~~~~ 350 (413)
.++.++||++|...++.+++. .+..+..-..+++ +.+.++.|+.....||+++ ..+.+|||+| .++.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 457899999999999999873 3433433223444 4556777854445799998 5999999999 3788
Q ss_pred EEEcCCCCC--------------------h----------hHHHhhhcccCCCCCcceEEEEeccc
Q 015093 351 VINYDLPTQ--------------------P----------ENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 351 vi~~~~~~s--------------------~----------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
||+.+.|.. . ..+.|.+||+-|...+.-++++++..
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 998886631 1 11359999999987665555555543
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-23 Score=182.29 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=122.0
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|+++|.++++.+..+++.++++|||+|||.+++.++...+... ..+++|++|+++|++||.++++++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 89999999999999888899999999999999988777655432 3389999999999999999999987666667777
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
+.++..... ......+|+|+||+.+... .......+++||+||||++.+ ..+..++..+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 777654321 1124579999999987543 222345689999999999853 466778888877899999999
Q ss_pred eCChhH
Q 015093 222 TMPPEA 227 (413)
Q Consensus 222 T~~~~~ 227 (413)
||++..
T Consensus 261 Tp~~~~ 266 (282)
T 1rif_A 261 SLRDGK 266 (282)
T ss_dssp SCCTTS
T ss_pred CCCCcc
Confidence 997643
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=164.96 Aligned_cols=171 Identities=18% Similarity=0.204 Sum_probs=124.0
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc--CceeEEEEcccHHHHHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES--LQCQALVLAPTRELAQQIE 125 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~--~~~~~lvl~P~~~l~~q~~ 125 (413)
++.+.+.........++++|.++++.+.+|+++++.||||||||.++..++++...... ...++++++|+++++.|..
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 34444444444445789999999999999999999999999999888777776554332 2458999999999999998
Q ss_pred HHHHHhhc-ccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh-hccCcH-HH
Q 015093 126 KVMRALGD-YMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM-LSRGFK-DQ 202 (413)
Q Consensus 126 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~-~~ 202 (413)
+.+..... ..+..++........ .....++|+|+||+.+.+.+.. .+.++++||+||||+. .+.++. ..
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 88866433 234444433322210 0013478999999999998876 3678999999999984 454444 45
Q ss_pred HHHHHhhCCCCceEEEEeeeCChhH
Q 015093 203 IYDIFQHLPGKIQVGVFSATMPPEA 227 (413)
Q Consensus 203 ~~~~~~~~~~~~~~i~lSAT~~~~~ 227 (413)
+..+....+ +.+++++|||++...
T Consensus 199 l~~i~~~~~-~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 199 LRDVVQAYP-EVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHCT-TSEEEEEECSSCCHH
T ss_pred HHHHHhhCC-CCeEEEEecCCCHHH
Confidence 566666654 689999999998665
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-19 Score=174.71 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=65.5
Q ss_pred CCcHHHHhhhhh----hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~----~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+||+.|.+.+.. +..|+++++.+|||+|||+++++|++..+... +.+++|++||++++.|+.+++..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 689999988864 56789999999999999999999998876542 358999999999999999999888665556
Q ss_pred eEEEEEC
Q 015093 138 KVHACVG 144 (413)
Q Consensus 138 ~~~~~~~ 144 (413)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6555554
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=161.14 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce-EE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK-VH 140 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~-~~ 140 (413)
.|+++|.++++.+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 7999999999999999999999999999999987776653 348999999999999999998884 566 77
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.+.|+.. ...+|+|+|++.+....... ...+++||+||+|++.+..+. .+...++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLT 225 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEE
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEe
Confidence 7777654 25689999999987665431 234799999999998766544 4555554 67789999
Q ss_pred eeCChh
Q 015093 221 ATMPPE 226 (413)
Q Consensus 221 AT~~~~ 226 (413)
|||...
T Consensus 226 ATp~r~ 231 (237)
T 2fz4_A 226 ATFERE 231 (237)
T ss_dssp ESCC--
T ss_pred cCCCCC
Confidence 999754
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=150.04 Aligned_cols=126 Identities=16% Similarity=0.213 Sum_probs=99.5
Q ss_pred cccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcC-CCe-EEEEeC
Q 015093 263 EEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSG-SSR-VLITTD 337 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vli~t~ 337 (413)
...|...+..++... .+.++||||++...++.+.+.|.+. |+.+..+||+++..+|.++++.|+++ +.+ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 457888888888776 6789999999999999999999885 89999999999999999999999998 677 788999
Q ss_pred ccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceE--EEEeccccH
Q 015093 338 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA--INFVTRDDD 388 (413)
Q Consensus 338 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 388 (413)
++++|+|++.+++||++++||++..+.|++||++|.|+.+.+ +.+++....
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 999999999999999999999999999999999999986654 556666543
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-09 Score=100.96 Aligned_cols=160 Identities=19% Similarity=0.173 Sum_probs=91.9
Q ss_pred HHHHHHHhCC-CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHH--HHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 50 NLLRGIYAYG-FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT--FCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 50 ~~~~~l~~~~-~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~--~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
.+...+.... -..-.+.|..++..++.++.+++.|++|+|||.+ +++..+..+.. ..+.++++++||...+.+..+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e 214 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTE 214 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHH
Confidence 3444555431 1123688999999999999999999999999944 44444443322 234589999999999999888
Q ss_pred HHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHH
Q 015093 127 VMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDI 206 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 206 (413)
.+.......++...... ... ... ..-..++-.+++.. .+.........++++|+|||+.+ + ...+..+
T Consensus 215 ~~~~~~~~l~l~~~~~~-~~~--~~~---~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~L 282 (608)
T 1w36_D 215 SLGKALRQLPLTDEQKK-RIP--EDA---STLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRL 282 (608)
T ss_dssp HHTHHHHHSSCCSCCCC-SCS--CCC---BTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHH
T ss_pred HHHHHHhcCCCCHHHHh-ccc--hhh---hhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhC-C---HHHHHHH
Confidence 77665443332110000 000 000 00001111122211 01111112225789999999954 2 4566788
Q ss_pred HhhCCCCceEEEEeee
Q 015093 207 FQHLPGKIQVGVFSAT 222 (413)
Q Consensus 207 ~~~~~~~~~~i~lSAT 222 (413)
+..++...+++++.=+
T Consensus 283 l~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 283 IDALPDHARVIFLGDR 298 (608)
T ss_dssp HHTCCTTCEEEEEECT
T ss_pred HHhCCCCCEEEEEcch
Confidence 8888888888876544
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=98.60 E-value=9.1e-08 Score=94.07 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=54.4
Q ss_pred CCcHHHHhhhhhhhCCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.|.+-|.+|+..++..++ .+|+||+|||||.+....+...+.. +.++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999877654 8999999999998876666655443 348999999999998888877654
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=98.53 E-value=9.3e-07 Score=86.41 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=54.2
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..+++.|.+++..++.+...+|.||+|+|||.+....+. .+... .+.++++++||...+.+..+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~-~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHH-HHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHH-HHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 468899999999988877899999999999987644443 33222 3458999999999998888877654
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.5e-07 Score=86.63 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=78.6
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.+.+.|..++..+..++.++|.|++|+|||.+. ..++..+.. .+.++++++||...+....+... ..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~-------~~--- 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--LGLEVGLCAPTGKAARRLGEVTG-------RT--- 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHT-------SC---
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--cCCeEEEecCcHHHHHHhHhhhc-------cc---
Confidence 689999999999999899999999999999764 334444333 24589999999887766544321 11
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHH----HHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDM----LRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~----~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
..|...++.. +.........+++||+||++.+ -...+..++..++...+++
T Consensus 256 ---------------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml----~~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 256 ---------------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMM----GDALMLSLLAAVPPGARVL 310 (574)
T ss_dssp ---------------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGC----CHHHHHHHHTTSCTTCEEE
T ss_pred ---------------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCC----CHHHHHHHHHhCcCCCEEE
Confidence 1111111100 0111112234789999999976 3456667778887777777
Q ss_pred EEe
Q 015093 218 VFS 220 (413)
Q Consensus 218 ~lS 220 (413)
++.
T Consensus 311 lvG 313 (574)
T 3e1s_A 311 LVG 313 (574)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=87.74 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=54.7
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..+++.|.+|+..++.+...+|.||+|||||.+....+...+ .. .+.++++++||...+.+..+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~-~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLS-KI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHH-HH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 457899999999998877799999999999987654443332 21 2358999999999999988888764
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.2e-07 Score=84.39 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=48.6
Q ss_pred hCCCCCCcHHHHhhhhhhhC----CC-cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHH
Q 015093 57 AYGFEKPSAIQQRGIVPFCK----GL-DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKV 127 (413)
Q Consensus 57 ~~~~~~~~~~Q~~~~~~~~~----~~-~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~ 127 (413)
...+..|++-|.+++..+.. ++ .++|.|++|||||.... .+...+.... ...+++++||...+..+.+.
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG-ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT-CCCEEEEESSHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC-CceEEEecCcHHHHHHHHhh
Confidence 35567899999999987643 23 79999999999997653 4444443332 23799999998877655443
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.2e-06 Score=80.52 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=55.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
..|++-|.+++.. .++.++|.|++|||||.+.+.-+...+... ....+++++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999984 356799999999999998776666655442 223489999999999999999887764
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-06 Score=85.65 Aligned_cols=69 Identities=20% Similarity=0.166 Sum_probs=53.8
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
..+.+.|.+|+..++.+...+|.||+|+|||.+....+ ..+... .+.++++++||...+.+..+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i-~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHH-HHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHH-HHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 35789999999998888789999999999998764433 333322 2458999999999888888777654
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=98.01 E-value=9.3e-05 Score=64.61 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=90.4
Q ss_pred cccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccc
Q 015093 263 EEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340 (413)
Q Consensus 263 ~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~ 340 (413)
...|...+..++... .+.++|||++..+..+-+.++|...++....+.|.....+++ -.+.+..+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 356777777777654 456999999999999999999999999999999986543222 1244555666677666
Q ss_pred cCCC-----CCCCCEEEEcCCCCChhHH-HhhhcccCCCC----CcceEEEEeccccHHHH
Q 015093 341 RGID-----VQQVSLVINYDLPTQPENY-LHRIGRSGRFG----RKGVAINFVTRDDDRML 391 (413)
Q Consensus 341 ~G~d-----~~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~ 391 (413)
.|+| +...+.||.+|..|++..= +|++-|+.|.| ++-.++.+++....+..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~ 242 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHC 242 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHH
Confidence 6776 6789999999999999875 89999988863 45678888888776653
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00085 Score=60.74 Aligned_cols=72 Identities=8% Similarity=0.021 Sum_probs=55.5
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDY 134 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~ 134 (413)
.|+++|...+..+...+.+++..+-+.|||......++..+.. ..+..++++.|+..-+....+.++.+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 7899999999887555668999999999998776555543333 23458999999999888887777776543
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=67.11 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=63.9
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcC
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (413)
-.++.|+.|+|||.... +.+.. .+.+|++|+++++.++.+.+.+.. . ...
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~----~------------------~~~ 212 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASG----I------------------IVA 212 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTS----C------------------CCC
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcC----c------------------ccc
Confidence 37899999999997642 22221 267999999999988877764321 0 011
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeee
Q 015093 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 159 ~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (413)
...-+.|.++++- ..........+++|+||+-.+ . ...+..++...+. .+++++.-+
T Consensus 213 ~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 213 TKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 2344788777652 222222223689999999855 2 2333344444443 555554443
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0016 Score=63.04 Aligned_cols=73 Identities=8% Similarity=0.033 Sum_probs=56.7
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
.|+++|...+..+...+..++..+-|+|||.+....++..+... .+.+++++.|+...+....+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998875567799999999999987655444433333 34589999999999988888888776544
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00039 Score=68.71 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=55.7
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|++-|.+++... ++.++|.|+.|||||.+...-+...+.. .-...++++++.|+..+.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999863 6779999999999999876666655544 22345899999999999999999887653
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00039 Score=62.28 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=27.3
Q ss_pred CcHHHHhhhhhhh----CCC---cEEEeCCCCCchhHHHHHHHHHh
Q 015093 63 PSAIQQRGIVPFC----KGL---DVIQQAQSGTGKTATFCSGILQQ 101 (413)
Q Consensus 63 ~~~~Q~~~~~~~~----~~~---~~lv~~~tGsGKT~~~~~~i~~~ 101 (413)
++|+|.+++..+. +++ ..++.||+|+|||..+...+-..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 4678887776654 333 38999999999998775444333
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00043 Score=56.21 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=27.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
|+-.++.||+|+|||..++-.+...... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 4457889999999998776554444322 44899999874
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00082 Score=54.39 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=26.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
+.-.++.||+|+|||..++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc
Confidence 4557899999999998765444433322 34788888874
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00081 Score=55.16 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=27.8
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
|.-.++.+++|+|||..++-.+...... +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC
Confidence 3336789999999998876655554333 348999999864
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00025 Score=59.08 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=51.8
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
|.-.++.|++|+|||..++-.+...... +.+++++.|...-. . ...+....++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~r---~--~~~i~srlG~~------------------ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDTR---S--IRNIQSRTGTS------------------ 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCGG---G--CSSCCCCCCCS------------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCch---H--HHHHHHhcCCC------------------
Confidence 4457889999999998775555444322 34788888765310 0 01111111111
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 194 (413)
...+-+.+...+...+..... ...+++||+||++.+
T Consensus 66 -~~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 -LPSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp -SCCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred -ccccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 012345666666666654322 234789999999965
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00073 Score=71.26 Aligned_cols=104 Identities=20% Similarity=0.145 Sum_probs=71.8
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEcccHHHHHHHHHHHHHhhccc-Cc
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLAPTRELAQQIEKVMRALGDYM-GV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~P~~~l~~q~~~~~~~~~~~~-~~ 137 (413)
.+++-|.+++..- +++++|.|+.|||||.+.+.-+...+.... ...+++++++|++.+.++.+.+....... +.
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~ 87 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQ 87 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhhc
Confidence 6899999999864 788999999999999988776666665533 34589999999999999988887643211 00
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHH
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLR 174 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~ 174 (413)
.++. ......+..-..+-|+|.++|...+.
T Consensus 88 -----~~~~--~~~~~~~~~~~~~~i~T~hsf~~~~l 117 (1232)
T 3u4q_A 88 -----RPGS--LHIRRQLSLLNRASISTLHSFCLQVL 117 (1232)
T ss_dssp -----STTC--HHHHHHHHHTTTSEEECHHHHHHHHH
T ss_pred -----Ccch--HHHHHHHhccCCCeEEeHHHHHHHHH
Confidence 0110 11112222224678999999975543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0016 Score=52.50 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3677999999999999765
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0014 Score=54.25 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=29.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
|.-.++.|++|+|||..++-.+...... +.+++++.|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecCC
Confidence 4447889999999998876666555333 448999998764
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0052 Score=51.02 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeee
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (413)
....+||+||+|.+... ....+..++...+.+..+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 34579999999987432 345566666666666666655443
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0011 Score=65.83 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=55.5
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
..|++-|.+++... .+.++|.|+.|||||.+...-+...+... -...++|+++.|+..+.++.+++.+..
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 36899999999863 56799999999999998776666655432 233589999999999999988887753
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0034 Score=55.87 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=23.1
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
++.+++.||+|+|||..+- .+...+... +..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~--~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT--TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC--CCEEEEEEH
Confidence 4679999999999997653 333333222 235555543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.005 Score=56.15 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
++.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999765
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0052 Score=47.27 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=16.7
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..+.++++.||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34677999999999999765
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0013 Score=53.87 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=26.8
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
|.-.++.+|+|+|||...+-.+...... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEeccC
Confidence 3447889999999997665554433222 348899999765
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0051 Score=54.11 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=24.6
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhh---CCCCceEEEEeeeCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQH---LPGKIQVGVFSATMP 224 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~---~~~~~~~i~lSAT~~ 224 (413)
..+|++||+|.+.. ...+..+++. -....-+|+.++|+.
T Consensus 133 ~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 133 KTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp EEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred ceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 46899999999862 3444444432 122455677788874
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0039 Score=48.11 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=24.4
Q ss_pred cEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeee
Q 015093 184 RMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 184 ~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT 222 (413)
+.+++||+|.+.. .....+..++...+.+.++|+.|..
T Consensus 78 g~l~ldei~~l~~-~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTR-EQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCH-HHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCH-HHHHHHHHHHhhcCCCEEEEEECCc
Confidence 5799999998743 2345555666666656666654443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0007 Score=52.69 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.5
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999764
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0028 Score=51.06 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=27.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
++=.++.||+|+|||.-.+..+-..... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 4447899999999997665555544333 3489999887
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0072 Score=56.21 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=23.7
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+.+++.||+|+|||..+ ..+...+.....+.+++++..
T Consensus 131 ~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHH-HHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeH
Confidence 56999999999999765 334333333322335565543
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.04 Score=47.45 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.4
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
..+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997763
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0049 Score=56.21 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=22.4
Q ss_pred EEEEccchhhhccCcHHH-HHHHHhhCCCCceEEEEeee
Q 015093 185 MFVLDEADEMLSRGFKDQ-IYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 185 ~iIiDE~h~~~~~~~~~~-~~~~~~~~~~~~~~i~lSAT 222 (413)
+||+||+|.+........ +..+++.. .+..+|+.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 999999999865432344 55555544 44555544443
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0059 Score=58.99 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCcHHHHhhhhhhhC--CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceE
Q 015093 62 KPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKV 139 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~--~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~ 139 (413)
.++.-|.+++..+.. ....++.|+-|.|||.+.-+.+ ..+. ..++|..|+..-+....+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~-----~~~~vtAP~~~a~~~l~~----~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA-----GRAIVTAPAKASTDVLAQ----FAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS-----SCEEEECSSCCSCHHHHH----HHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH-----hCcEEECCCHHHHHHHHH----HhhC-----
Confidence 678899999988876 3458999999999995543333 3332 146999999875553332 2110
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEE
Q 015093 140 HACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
.|-+..|+.+.. . ....+++|||||=.+ ....+..++..++ .+++
T Consensus 240 --------------------~i~~~~Pd~~~~---~----~~~~dlliVDEAAaI----p~pll~~ll~~~~----~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLA---S----DEQADWLVVDEAAAI----PAPLLHQLVSRFP----RTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHH---S----CCCCSEEEEETGGGS----CHHHHHHHHTTSS----EEEE
T ss_pred --------------------CeEEeCchhhhh---C----cccCCEEEEEchhcC----CHHHHHHHHhhCC----eEEE
Confidence 133445665431 1 123789999999976 4555556665443 5778
Q ss_pred eeeCC
Q 015093 220 SATMP 224 (413)
Q Consensus 220 SAT~~ 224 (413)
|.|..
T Consensus 285 ~tTv~ 289 (671)
T 2zpa_A 285 TTTVQ 289 (671)
T ss_dssp EEEBS
T ss_pred EecCC
Confidence 88875
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0086 Score=53.20 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=25.3
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEE
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~l 219 (413)
..+++++||+|.+........+..++...+....+|+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46899999999885233455566666665555666653
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.01 Score=53.30 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=27.1
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...++++||+|.+... ....+.+.+...+....+++.+..+
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeCch
Confidence 3579999999987432 3455666777766666666554433
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0035 Score=55.30 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999997763
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0061 Score=51.38 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999765
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.019 Score=51.61 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=29.8
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
..+++|+||+|. .+......+.+.+...+.+..+++.|-.+.
T Consensus 134 ~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 134 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 468999999998 445456677777877776666666555443
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.018 Score=51.05 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=26.0
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
...++|+||+|.+... ....+.+.+...+....+++.+.
T Consensus 110 ~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp SCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 3579999999987432 34556666777666666665443
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.038 Score=47.91 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 4567999999999999765
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0063 Score=55.57 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.5
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.||+|+|||..+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999765
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.04 Score=49.15 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=15.2
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 56999999999999775
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.027 Score=46.07 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.6
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
+.+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997653
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.018 Score=50.88 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=24.6
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..++|+||+|.+... ....+.+.+...+....+++.|
T Consensus 108 ~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 108 HKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred ceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 689999999987432 2344556666666666666554
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.042 Score=50.50 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=65.7
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-cc-HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PT-RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
-+++.+++|+|||.+....+. .+. .. +.+++++. ++ +.-+ .+.+..+....++.+.....+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~-~~-G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~---------- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYK-KR-GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ---------- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHH-HT-TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS----------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHH-Hc-CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC----------
Confidence 478899999999987644333 222 22 33565554 32 2212 2334444443444332211111
Q ss_pred cCCcEEEeChHHHH-HHHHcCCCCCCCccEEEEccchhhh---ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHH
Q 015093 157 AGVHVVVGTPGRVF-DMLRRQSLRPDYIRMFVLDEADEML---SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITR 232 (413)
Q Consensus 157 ~~~~Iii~T~~~l~-~~~~~~~~~~~~~~~iIiDE~h~~~---~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~ 232 (413)
.|..+. ..+.. .....++++|+|++.+.. +......+..+.+...+..-++.++|+...+......
T Consensus 163 --------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 163 --------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp --------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH
T ss_pred --------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH
Confidence 122221 12222 112347899999998643 2223445555555555556677788887555444444
Q ss_pred Hh
Q 015093 233 KF 234 (413)
Q Consensus 233 ~~ 234 (413)
.+
T Consensus 233 ~f 234 (433)
T 3kl4_A 233 RF 234 (433)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.024 Score=49.75 Aligned_cols=38 Identities=5% Similarity=0.167 Sum_probs=26.6
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+... -...+.+.+...++...+++.+
T Consensus 82 ~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred CceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 4689999999987433 3456667777766666666554
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.044 Score=44.20 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=69.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH-HHHHHHHHHHHhhcccCceEEEEECCcc----h-HH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE-LAQQIEKVMRALGDYMGVKVHACVGGTS----V-RE 150 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~----~-~~ 150 (413)
...+++..++|.|||.+++..++..+.. +.+++++-=.+. ....-.+.+.++ ++.+.....+.. . ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 3469999999999999998877776654 348888832221 000001112222 222222111111 0 00
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC--cHHHHHHHHhhCCCCceEEEEeeeCChhHH
Q 015093 151 DQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG--FKDQIYDIFQHLPGKIQVGVFSATMPPEAL 228 (413)
Q Consensus 151 ~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~ 228 (413)
..... -..|...... +....+++||+||+-.....+ -...+..++...+....+|+.+--+++.+.
T Consensus 101 ~~~~a----------~~~l~~a~~~--l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 101 DTAAC----------MAVWQHGKRM--LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp HHHHH----------HHHHHHHHHH--TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred HHHHH----------HHHHHHHHHH--HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 00000 1122222221 223458999999997643322 345677778888777777765555555444
Q ss_pred H
Q 015093 229 E 229 (413)
Q Consensus 229 ~ 229 (413)
+
T Consensus 169 e 169 (196)
T 1g5t_A 169 D 169 (196)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.018 Score=52.32 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
++.+++.||+|+|||..+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456999999999999765
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.036 Score=44.33 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
..++++.||+|+|||..+-
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4569999999999997653
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.12 Score=46.84 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=31.1
Q ss_pred ccCccCCCCCHHHHHHHHhC-C--CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAY-G--FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~-~--~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
-.+|++.+=-+...+.+... - +..|-.++...+ ...+.+|+.||+|+|||+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 45677776445555555432 1 112222333332 23577999999999999876
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.61 E-value=0.052 Score=48.08 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=28.5
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHh-hhhh-hhCCCcEEEeCCCCCchhHHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQR-GIVP-FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~~~~-~~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|+.+.-.+...+.+...-. ++.... .+.. ....+.+++.||+|+|||..+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 456666656666666654210 111100 0011 112356999999999999776
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.1 Score=43.64 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=23.0
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
..+||+||+|.+.. .....+...+...+....+++.|.
T Consensus 127 ~~vlviDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 127 FKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SEEEEEETGGGSCH-HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred ceEEEEECcccccH-HHHHHHHHHHhcCCCceEEEEEeC
Confidence 47999999998632 234445555555555555554443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.05 Score=48.58 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=26.6
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
..+++|+||+|.+.. .....+.+++...+....+++.+
T Consensus 110 ~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 110 GFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp SCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEEe
Confidence 368999999998743 23556777777777666666544
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.19 Score=46.23 Aligned_cols=56 Identities=21% Similarity=0.164 Sum_probs=31.4
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEc-cc-HHHHHHHHHHHHHhhcccCceEE
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLA-PT-RELAQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~-P~-~~l~~q~~~~~~~~~~~~~~~~~ 140 (413)
-+++.+++|+|||.+....+.. +.. . +.+++++. .+ +.- ..+.++.++...++.+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~-l~~-~-G~kVllv~~D~~R~a---a~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARY-FQK-R-GYKVGVVCSDTWRPG---AYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHT-T-TCCEEEEECCCSSTH---HHHHHHHHHGGGTCEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHH-HHH-C-CCeEEEEeCCCcchh---HHHHHHHHHHhcCCcEE
Confidence 4888999999999876544432 322 2 33555554 32 222 23445555555565543
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.066 Score=48.37 Aligned_cols=38 Identities=8% Similarity=0.266 Sum_probs=24.0
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...++|+||+|.+... ....+.+.+...+....+++.|
T Consensus 119 ~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 3579999999987432 3455566666655555455443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.2 Score=42.59 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=15.6
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 466999999999999765
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.015 Score=51.33 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=14.7
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
++++.||+|+|||..+-
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 49999999999997653
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.1 Score=48.63 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=27.4
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
+..|.-++|.|++|+|||..++..+...... .+.+++|+..-
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC
Confidence 3445669999999999997765544443322 13367777643
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.063 Score=53.47 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=66.7
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..|.+.++.+.+ .++.+..++|+++..++...++.+.+|+.+|+|+|. .+...+++.++..||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 346899999999988888777654 378999999999999999999999999999999996 555677888888888
Q ss_pred EcCC
Q 015093 353 NYDL 356 (413)
Q Consensus 353 ~~~~ 356 (413)
+-..
T Consensus 496 IDEa 499 (780)
T 1gm5_A 496 IDEQ 499 (780)
T ss_dssp EESC
T ss_pred eccc
Confidence 6554
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.02 Score=53.23 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=14.9
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 35999999999999765
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.17 Score=44.25 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.5
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.++.+++.||+|+|||..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 4677999999999999775
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.054 Score=48.07 Aligned_cols=51 Identities=27% Similarity=0.253 Sum_probs=32.6
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
+..|.-++|.|++|+|||..++-.+..... .+.+++|+..- .-..|...++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC-CCHHHHHHHH
Confidence 344566999999999999876555544433 23477777653 3345555544
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.25 Score=45.24 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=30.1
Q ss_pred ccCccCCCCCHHHHHHHHhC---CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
-.+|++.+--+...+.+... .+..|-.++...+ ...+.+|+.||+|+|||..+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 35677775444444444331 1112222333222 23567999999999999876
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.065 Score=49.84 Aligned_cols=115 Identities=18% Similarity=0.085 Sum_probs=55.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH-
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI- 154 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (413)
.|.-++|.|++|+|||..++..+...... .+.+++++..- .-..|+..++.......+..- ...|......+.+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~-l~~g~l~~~~~~~~~ 274 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNR-VRLGQLTDRDFSRLV 274 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTT-CCGGGCCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH-HhCCCCCHHHHHHHH
Confidence 45568999999999997765555444322 13367777653 223444444432211111100 01122222222111
Q ss_pred -----HhcCCcEEEe-----ChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 155 -----LSAGVHVVVG-----TPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 155 -----~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
+. ...+.+. |.+.+...+..... ...+++||+|..+.+..
T Consensus 275 ~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 275 DVASRLS-EAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 11 2345553 34445433322100 01378999999998754
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.063 Score=49.24 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.8
Q ss_pred CcEEE--eCCCCCchhHHHH
Q 015093 78 LDVIQ--QAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv--~~~tGsGKT~~~~ 95 (413)
..++| .||+|+|||..+-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45888 9999999997653
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.086 Score=48.07 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999775
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.16 Score=45.67 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999997763
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.081 Score=50.26 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=26.1
Q ss_pred CccEEEEccchhhhccC--cHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 182 YIRMFVLDEADEMLSRG--FKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
...+|++||+|.+.... ....+..++... ..++++++++..
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 35799999999875432 224555555543 455777777653
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.14 Score=48.00 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=27.6
Q ss_pred cEEEEccchhhhccC----------cHHHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 184 RMFVLDEADEMLSRG----------FKDQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 184 ~~iIiDE~h~~~~~~----------~~~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
++|++||+|.+.... ....+...+........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 689999999876421 223455555555556667778888654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.36 Score=40.38 Aligned_cols=26 Identities=19% Similarity=0.001 Sum_probs=19.9
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~ 100 (413)
..|.-+.+.+|+|+|||..+...+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34667999999999999876554443
|
| >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.27 Score=45.90 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCC
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQ 346 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~ 346 (413)
...+...++. .+.+++|.+.+...++.+.+.|.+.++.+...... . .+. ...+.|+...+..|+-+|
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEET
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccC
Confidence 3455555543 24689999999999999999999988765544321 1 112 235677778899999999
Q ss_pred CCCEEEEcC
Q 015093 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
....+|+.+
T Consensus 438 ~~klaVITE 446 (483)
T 3hjh_A 438 VRNLALICE 446 (483)
T ss_dssp TTTEEEEEH
T ss_pred CCCEEEEEc
Confidence 988888754
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.3 Score=45.34 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999775
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.23 Score=43.71 Aligned_cols=53 Identities=15% Similarity=-0.018 Sum_probs=33.4
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
+..|.-++|.|++|+|||..++..+......+ .++++++-- .-..|+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHHH
Confidence 44466699999999999977655554443322 477777643 334455555443
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.21 Score=43.95 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999765
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.25 Score=45.35 Aligned_cols=80 Identities=10% Similarity=0.198 Sum_probs=65.3
Q ss_pred cCCCcEEEEEcCcccHHHHHHHHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccc---cCCCCCCCC
Q 015093 277 LAITQSVIFVNTRRKVDWLTDQMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLA---RGIDVQQVS 349 (413)
Q Consensus 277 ~~~~~~lIf~~~~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~---~G~d~~~~~ 349 (413)
..++++||.+|++..+.++++.+++ .++.+..++|+.+..++....+.+..++.+|+|+|+ .+. .-++...+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3557899999999999999999988 578999999999999888888999999899999996 221 124556788
Q ss_pred EEEEcCC
Q 015093 350 LVINYDL 356 (413)
Q Consensus 350 ~vi~~~~ 356 (413)
.+|+-+.
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8876544
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.12 Score=45.17 Aligned_cols=42 Identities=10% Similarity=-0.067 Sum_probs=29.6
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
-++|.+|+|+|||..++..+.+.... ..+.+++|+..-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhh
Confidence 58999999999998877666554432 1244788888765553
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.08 E-value=3.4 Score=36.50 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=30.0
Q ss_pred hHHHHHHHHcCCCCCCCccEEEEccchhhhc---cCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 166 PGRVFDMLRRQSLRPDYIRMFVLDEADEMLS---RGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~---~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...+...+..... .--+||+||+|.+.. ..+...+..+....+ +..++ ++++.
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i-~~g~~ 179 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFI-MSGSE 179 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEE-EEESS
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEE-EEcCc
Confidence 4455555544221 135899999999753 345556666655543 44444 55554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.26 Score=44.11 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=19.0
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
.+..++|.||||||||... ..++..+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL-~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL-AAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 3556999999999999653 44444443
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.46 Score=47.27 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+|+.||+|+|||+.+
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999765
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.45 Score=47.53 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.9
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998763
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.16 Score=46.71 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=34.9
Q ss_pred ccccCccCCCCCHHHHHHHHhC---CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 37 EVYDSFDSMGLKENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+|++.+--+...+.+... .+..|-.++...++ ..+.+|+.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 3456788887666666666542 11233333333332 2577999999999999875
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=91.13 E-value=0.75 Score=48.14 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=64.8
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.+++|.+|++..+.+.++.+.+ .+..+..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++..+|
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999988888877764 357888999999999999999999999999999995 666667887887777
Q ss_pred EcC
Q 015093 353 NYD 355 (413)
Q Consensus 353 ~~~ 355 (413)
+-.
T Consensus 731 iDE 733 (1151)
T 2eyq_A 731 VDE 733 (1151)
T ss_dssp EES
T ss_pred Eec
Confidence 543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=1.4 Score=39.96 Aligned_cols=40 Identities=10% Similarity=-0.136 Sum_probs=25.1
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEccc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPT 117 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~ 117 (413)
.-+.|.+|+|+|||......+...+... ..+.+++++.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4589999999999977654444433321 123467777643
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.00 E-value=1.4 Score=34.17 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=54.3
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++..+....+.+... +..+..++|+.......... .....|+|+|. ....++++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCchhcC
Confidence 348999999999998888888774 67888999987655544332 34678999992 23456677778
Q ss_pred cEEEEccch
Q 015093 184 RMFVLDEAD 192 (413)
Q Consensus 184 ~~iIiDE~h 192 (413)
++||.-+..
T Consensus 105 ~~Vi~~~~p 113 (163)
T 2hjv_A 105 SLVINYDLP 113 (163)
T ss_dssp SEEEESSCC
T ss_pred CEEEEeCCC
Confidence 888865543
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=90.88 E-value=2.4 Score=33.23 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=53.8
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++.-+....+.+... +..+..++|+.........+ .....|+|+|. ....+++...+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhC
Confidence 348999999999998888887764 67888899887655544332 34678999993 22445666677
Q ss_pred cEEEEccch
Q 015093 184 RMFVLDEAD 192 (413)
Q Consensus 184 ~~iIiDE~h 192 (413)
++||.-+..
T Consensus 101 ~~Vi~~d~p 109 (172)
T 1t5i_A 101 NIAFNYDMP 109 (172)
T ss_dssp SEEEESSCC
T ss_pred CEEEEECCC
Confidence 888765544
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.49 E-value=0.2 Score=42.07 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=31.6
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
.|.-+++.||+|+|||..++..+...... +.+++++..... ..+..+.+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~-~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEH-PVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCC-HHHHHHHHHH
Confidence 46678999999999998765444443322 336777764332 3444444443
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.45 E-value=0.19 Score=42.27 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=31.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
|.-+++.|++|+|||..++-.+.+.+... +.++++++-. .-..+..+.+.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc-CCHHHHHHHHHHc
Confidence 45589999999999977655444433222 2356666643 3345555555443
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=90.23 E-value=1.7 Score=35.60 Aligned_cols=74 Identities=8% Similarity=0.212 Sum_probs=54.6
Q ss_pred CcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc-----ccCCCCCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQV 348 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~-----~~G~d~~~~ 348 (413)
.++||.+|+++.+.++++.+++. +..+..++|+.+..++.+ .+.++..+|+|+|. .+ ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999888877653 678899999988665543 34456678999995 22 234667788
Q ss_pred CEEEEcCC
Q 015093 349 SLVINYDL 356 (413)
Q Consensus 349 ~~vi~~~~ 356 (413)
+.+|+-+.
T Consensus 160 ~~lViDEa 167 (220)
T 1t6n_A 160 KHFILDEC 167 (220)
T ss_dssp CEEEEESH
T ss_pred CEEEEcCH
Confidence 88886543
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.02 E-value=1.4 Score=34.62 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=53.0
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++..+....+.+.+. +..+..++|+.......... .+...|+|+|. ....++++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccC
Confidence 458999999999988888777664 67888999987765544333 34678999992 23456677778
Q ss_pred cEEEEcc
Q 015093 184 RMFVLDE 190 (413)
Q Consensus 184 ~~iIiDE 190 (413)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888544
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=89.92 E-value=0.5 Score=49.19 Aligned_cols=79 Identities=10% Similarity=0.220 Sum_probs=64.8
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cccc---CCCCCCCCE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLAR---GIDVQQVSL 350 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~---G~d~~~~~~ 350 (413)
.+.++||.+|+++.|.++++.+++ .++.+..++|+.+..++....+.+.+|..+|+|+|+ .+.. -+++..+..
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999998 567899999999998888888999999999999996 2211 145567888
Q ss_pred EEEcCC
Q 015093 351 VINYDL 356 (413)
Q Consensus 351 vi~~~~ 356 (413)
+|+-+.
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 887544
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=89.81 E-value=2.1 Score=33.17 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=53.8
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++.-+....+.+... +..+..++|+.......... .....|+|+|. ....++++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccC
Confidence 348999999999998888877764 67788899887755544332 34678999992 23456677778
Q ss_pred cEEEEccch
Q 015093 184 RMFVLDEAD 192 (413)
Q Consensus 184 ~~iIiDE~h 192 (413)
++||.-+..
T Consensus 100 ~~Vi~~~~p 108 (165)
T 1fuk_A 100 SLVINYDLP 108 (165)
T ss_dssp SEEEESSCC
T ss_pred CEEEEeCCC
Confidence 887775543
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.3 Score=42.77 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997654
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.57 E-value=1.9 Score=36.17 Aligned_cols=74 Identities=14% Similarity=0.281 Sum_probs=54.1
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc------ccCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL------ARGIDVQ 346 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~------~~G~d~~ 346 (413)
...++||.+|+++.+.++++.+++. +..+..++|+.+..++...+ .+..+|+|+|. .+ ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4457999999999998888777653 78888999998765544332 24678999995 21 1457788
Q ss_pred CCCEEEEcC
Q 015093 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
.++.+|+-+
T Consensus 186 ~~~~lViDE 194 (249)
T 3ber_A 186 ALKYLVMDE 194 (249)
T ss_dssp TCCEEEECS
T ss_pred ccCEEEEcC
Confidence 888888654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=89.20 E-value=0.27 Score=46.33 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=20.2
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
+..|..++|.||||||||... ..++..+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred HhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 456778999999999999653 3344333
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.02 E-value=0.28 Score=45.09 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=31.1
Q ss_pred ccccCccCCCCCHHHHHHHHhC---CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 37 EVYDSFDSMGLKENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+-.+|++.+--+...+.+... .+..|-.++...+ ...+.+|+.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 3445677776444444444331 1112222222222 23577999999999999876
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=88.95 E-value=2 Score=35.10 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=53.6
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+++.-+....+.+... +..+..++|+.........+ .+..+|+|+|. +...+++...+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccC
Confidence 448999999999988888877765 77888999987765554433 34678999992 33456777778
Q ss_pred cEEEEcc
Q 015093 184 RMFVLDE 190 (413)
Q Consensus 184 ~~iIiDE 190 (413)
++||.=+
T Consensus 101 ~~Vi~~~ 107 (212)
T 3eaq_A 101 DLVVHYR 107 (212)
T ss_dssp SEEEESS
T ss_pred cEEEECC
Confidence 8877533
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.80 E-value=0.44 Score=43.91 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=31.7
Q ss_pred ccCccCCCCCHHHHHHHHhCC---CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAYG---FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
-.+|++.+--+...+.+...= +..|-.++...+ ...+.+|+.||+|+|||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHHH
Confidence 466777765566666665421 112222222222 23577999999999999776
|
| >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* | Back alignment and structure |
|---|
Probab=88.37 E-value=0.79 Score=48.24 Aligned_cols=55 Identities=24% Similarity=0.136 Sum_probs=42.6
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccc---------cCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYE---------SLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~---------~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
+..+|.|+.|||||.+...-++..+... -.-.++|+||=|++-+.++.+++.+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3469999999999998877777766532 122479999999999999988887653
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=88.36 E-value=0.87 Score=43.21 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD 337 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~ 337 (413)
.+++||.+|++..+....+.|++.+..+..+++..+..++......+..+..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999999899999999999999996
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=88.16 E-value=0.64 Score=40.96 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=32.9
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccc---------cCc----eeEEEEcccHHH-HHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYE---------SLQ----CQALVLAPTREL-AQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---------~~~----~~~lvl~P~~~l-~~q~~~~~~~~ 131 (413)
|.-++|.+++|+|||..++..+.+..... ..+ .+++|+.--..+ ..+..+.++++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 34589999999999987766555432221 111 578887755432 34444444443
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.05 E-value=5.4 Score=31.83 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=53.1
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIR 184 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.++||.|+++.-+....+.++.. +..+..++|+.........+ .....|+|+|. ....+++...++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------~~~~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD------VASKGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH------HHHTTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC------chhcCCCcccCC
Confidence 47999999999999888888765 67888899987665544332 35678999992 223466777788
Q ss_pred EEEEccc
Q 015093 185 MFVLDEA 191 (413)
Q Consensus 185 ~iIiDE~ 191 (413)
+||.-+.
T Consensus 125 ~VI~~d~ 131 (191)
T 2p6n_A 125 HVINYDM 131 (191)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8776443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=87.99 E-value=0.53 Score=38.47 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=25.4
Q ss_pred cHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 64 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+.-|..+++.+..|.-+.+.||.|+|||...
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 3446778888888888999999999999654
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.99 E-value=0.76 Score=41.91 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=31.2
Q ss_pred cccCccCCCCCHHHHHHHHhC---CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 38 VYDSFDSMGLKENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+-.+|++.+=-+...+.+... .+..|-.++...++ -.+.+|+.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 446777775344444444321 11233333333332 2477999999999999876
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=87.95 E-value=5.8 Score=34.23 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=15.7
Q ss_pred CCCcEEEeCCCCCchhHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~ 96 (413)
.++.+.+.++.|+|||..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345577789999999976543
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=0.28 Score=39.52 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
++-+++.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568999999999997653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=0.59 Score=43.88 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=20.2
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
.++.+++|.|+||||||.+.-..+...+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999977544444333
|
| >3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B* | Back alignment and structure |
|---|
Probab=87.79 E-value=0.33 Score=51.13 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=31.5
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
-+|.|+.|||||.+.+.-+...+.....+.+++++||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 4789999999999987777766655444468999999764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=0.44 Score=39.11 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=24.2
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
..|.-+++.+|+|+|||..+...+. ..+.+++++.-
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~------~~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL------LSGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH------HHCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH------HcCCcEEEEEC
Confidence 3466799999999999977654433 12336666654
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=87.75 E-value=0.36 Score=39.18 Aligned_cols=17 Identities=18% Similarity=-0.003 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45999999999999765
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=87.70 E-value=0.43 Score=43.02 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.8
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|+.+++.||||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345667999999999999654
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=87.60 E-value=0.97 Score=38.35 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCCCcHHH-HhhhhhhhCCC-----cEEEeCCCCCchhHHHH
Q 015093 49 ENLLRGIYAYGFEKPSAIQ-QRGIVPFCKGL-----DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q-~~~~~~~~~~~-----~~lv~~~tGsGKT~~~~ 95 (413)
.++.+.|+-.|+. +.+ ..++..+++++ .+++.||+|+|||..+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3667777776664 333 33455666653 49999999999998764
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=87.60 E-value=0.3 Score=43.06 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.7
Q ss_pred CcEEEeCCCCCchhHHHHH
Q 015093 78 LDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~ 96 (413)
+-++|.||||+|||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999987643
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=87.52 E-value=0.49 Score=39.18 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=24.6
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+..|.-+++.||+|+|||..+...+.... .. +.+++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~--~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL-RD--GDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH-HH--TCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HC--CCeEEEEEc
Confidence 34567789999999999976543332222 21 235666653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=87.49 E-value=5.2 Score=35.15 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=30.2
Q ss_pred ccEEEEccchhhh-ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHh
Q 015093 183 IRMFVLDEADEML-SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 183 ~~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (413)
.+++++|.+.... .......+..+.+.+.....++.+.++...+.....+.+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 4678899876532 223344455555555556667778877765555444443
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=87.46 E-value=0.47 Score=43.85 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=29.1
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
...+++|.|+||||||... ..++..+... +..++|+=|.-+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~--g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR--GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT--TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC--CCcEEEEeCCCchhH
Confidence 3578999999999999875 3333333222 336777777766643
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=87.24 E-value=0.92 Score=43.74 Aligned_cols=59 Identities=3% Similarity=0.027 Sum_probs=53.7
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHH--hcCCCeEEEEeC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREF--RSGSSRVLITTD 337 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~vli~t~ 337 (413)
.+.+||.+|++..+....+.|.+.|+.+..++|+.+..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 46899999999999999999999999999999999999998888888 467889999997
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=87.11 E-value=0.97 Score=41.35 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEE
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVL 114 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl 114 (413)
+.-++|.||||||||... ..++..+... ..+++++
T Consensus 167 ggii~I~GpnGSGKTTlL-~allg~l~~~--~g~I~~~ 201 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTL-YAGLQELNSS--ERNILTV 201 (418)
T ss_dssp SEEEEEECSTTSCHHHHH-HHHHHHHCCT--TSCEEEE
T ss_pred CCeEEEECCCCCCHHHHH-HHHHhhcCCC--CCEEEEe
Confidence 455899999999999653 4444444332 2245554
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=86.99 E-value=0.45 Score=37.79 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
++.+++.||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356999999999999765
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=86.95 E-value=1.9 Score=35.95 Aligned_cols=73 Identities=8% Similarity=0.102 Sum_probs=53.7
Q ss_pred CCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----ccc-cCCCCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-----LLA-RGIDVQQV 348 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~-~G~d~~~~ 348 (413)
+.++||.+|+++.+.++++.+++ .+..+..++|+.+...+...+.. ..+|+|+|+ .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999998888777765 47888999999887666544432 478999996 122 34577788
Q ss_pred CEEEEcC
Q 015093 349 SLVINYD 355 (413)
Q Consensus 349 ~~vi~~~ 355 (413)
+.+|+-+
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8888654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.86 E-value=0.42 Score=38.71 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=16.9
Q ss_pred CCCcEEEeCCCCCchhHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~ 95 (413)
.++.+++.|++|||||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46679999999999998763
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=0.79 Score=40.40 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=32.4
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEcccHHH-HHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPTREL-AQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~~~l-~~q~~~~~~~~ 131 (413)
|.-+++.||+|+|||..++..+....... ..+.+++|+.--..+ ..+..+.++++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999987766555433221 113477777654332 33444444443
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.76 E-value=0.37 Score=41.05 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.2
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|+.+++.||+|||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 446777999999999999654
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=86.76 E-value=1.4 Score=35.48 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=51.0
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-c----ccc-CCCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-L----LAR-GIDVQQ 347 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~----~~~-G~d~~~ 347 (413)
..+++|.+|++..+.++++.+.+. +..+..++|+.+..+.... + .+..+|+|+|. . +.. .+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999998888877653 5678888988876543322 2 34678999996 2 222 346677
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
++.+|+-+
T Consensus 147 ~~~lViDE 154 (206)
T 1vec_A 147 VQMIVLDE 154 (206)
T ss_dssp CCEEEEET
T ss_pred CCEEEEEC
Confidence 88887643
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.72 E-value=2 Score=34.22 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=50.7
Q ss_pred CCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEE
Q 015093 87 GTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVV 162 (413)
Q Consensus 87 GsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ii 162 (413)
.+.|-.. +.-++... ..+.++||.|+++.-+....+.++.. +..+..++|+......... ......|+
T Consensus 29 ~~~K~~~-L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHHH-HHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHHH-HHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 4567543 33344332 23458999999999988888877764 6778888887654433222 24567899
Q ss_pred EeChHHHHHHHHcCCCCCCCccEEEEcc
Q 015093 163 VGTPGRVFDMLRRQSLRPDYIRMFVLDE 190 (413)
Q Consensus 163 i~T~~~l~~~~~~~~~~~~~~~~iIiDE 190 (413)
|+|. . ...+++...+++||.-+
T Consensus 101 vaT~-~-----~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 101 VATA-V-----AARGLDISNVKHVINFD 122 (185)
T ss_dssp EEEC------------CCCSBSEEEESS
T ss_pred EEcC-h-----hhcCCCcccCCEEEEeC
Confidence 9992 2 23455666778877643
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=86.27 E-value=0.47 Score=37.69 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.9
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666899999999999764
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=86.25 E-value=0.51 Score=40.20 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4567999999999999765
|
| >2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.10 E-value=0.53 Score=37.19 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=40.9
Q ss_pred cHHHHhhhhhhhCC--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHH
Q 015093 64 SAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQ 123 (413)
Q Consensus 64 ~~~Q~~~~~~~~~~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q 123 (413)
.+-|..++..+... .-.+|.++-|++|+...+..++.... ..+.++.+++|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--HTTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--hcCeEEEEEcCchHHHHH
Confidence 35688888887654 34889999999999886544444322 235589999999775543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=86.06 E-value=0.48 Score=38.50 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=17.8
Q ss_pred hhhCCCcEEEeCCCCCchhHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
++..+.-+++.||+|||||..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 3556778999999999999765
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=85.90 E-value=0.79 Score=41.65 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.+.+++|.|+||+|||...-..+.... . .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~--~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M--QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T--TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H--CCCEEEEEeCCcC
Confidence 567899999999999976544333332 2 2447778777654
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=85.72 E-value=0.66 Score=37.59 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.5
Q ss_pred EEEeCCCCCchhHHHHHHHHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQ 100 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~ 100 (413)
.++.|++|||||..+...+..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999876554444
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=85.69 E-value=0.45 Score=41.48 Aligned_cols=18 Identities=28% Similarity=0.145 Sum_probs=14.8
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
-++|.||||+|||..+..
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 478899999999977643
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.67 E-value=0.38 Score=45.19 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=20.7
Q ss_pred hhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 69 RGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 69 ~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+...+..+.++++.||+|+|||..+
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHH
Confidence 34445566889999999999999765
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=85.67 E-value=0.7 Score=41.32 Aligned_cols=39 Identities=15% Similarity=-0.001 Sum_probs=27.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
.++-++|.+++|+|||..++..+...... +.+++++..-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 45669999999999998876655544322 3367777763
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=85.54 E-value=0.32 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=18.7
Q ss_pred hhhhCCCcEEEeCCCCCchhHHH
Q 015093 72 VPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 72 ~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
..+..++++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34455788999999999999765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=85.53 E-value=0.56 Score=37.12 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.8
Q ss_pred CCCcEEEeCCCCCchhHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~ 95 (413)
.+..+++.|++|||||..+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999998763
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=85.48 E-value=1.7 Score=35.05 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=52.1
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-c----cc-cCCCCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-L----LA-RGIDVQQVS 349 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~----~~-~G~d~~~~~ 349 (413)
...+++|.+|++..+..+++.+++. +..+..++|+.+...+...+. ...+|+|+|. . +. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3468999999999999999988765 457778888876554433332 2577999995 1 12 346677888
Q ss_pred EEEEcC
Q 015093 350 LVINYD 355 (413)
Q Consensus 350 ~vi~~~ 355 (413)
.+|+-+
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 888644
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=85.42 E-value=0.86 Score=40.54 Aligned_cols=41 Identities=10% Similarity=-0.124 Sum_probs=26.8
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccc---cCceeEEEEcccH
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYE---SLQCQALVLAPTR 118 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~---~~~~~~lvl~P~~ 118 (413)
.-++|.||+|+|||..++..+....... ..+.+++|+....
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4489999999999987765555433221 1234777776544
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=85.42 E-value=0.64 Score=41.46 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=27.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
.|+-++|.+|+|+|||..++..+...... +.+++++....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 45669999999999998776555444322 34677776543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=85.35 E-value=0.4 Score=38.82 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999764
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=85.30 E-value=0.48 Score=41.20 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.8
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
-++|.||||+|||..+..
T Consensus 12 ~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 378899999999977643
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=85.29 E-value=0.54 Score=37.36 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+++.|++|||||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4568999999999998764
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=85.18 E-value=0.57 Score=38.25 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=15.8
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566899999999999765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=85.13 E-value=0.39 Score=37.64 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=13.5
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 4 I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 4 ILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999875
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=85.13 E-value=0.32 Score=38.97 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.5
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+|..+++.||+|||||..+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35667899999999999764
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=85.03 E-value=1 Score=40.45 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+.++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999876
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=84.85 E-value=0.45 Score=37.54 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.2
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+.-+++.|++|||||..+
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345899999999999776
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=84.80 E-value=0.53 Score=42.26 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.6
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..|..++|.||||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 456888999999999999653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.78 E-value=0.23 Score=42.69 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=25.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHH-Hhhhhhh--hCCCcEEEeCCCCCchhHHH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQ-QRGIVPF--CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~~~~~--~~~~~~lv~~~tGsGKT~~~ 94 (413)
..+|++.+--+.+.+.+...- ..|+. .+++..+ .-.+.+++.||+|+|||..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 345666665566666554321 11111 1222221 12344999999999999764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=84.55 E-value=0.49 Score=38.41 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.5
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|.-+.+.||+|||||..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999765
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=84.52 E-value=0.47 Score=41.19 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
++.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 567999999999999765
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=84.38 E-value=1.1 Score=42.59 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=20.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhccc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~ 104 (413)
..+++|.|.||||||.+.-..++..+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3579999999999998765555554433
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=84.31 E-value=0.56 Score=39.71 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=13.9
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
++|.||+|||||..+-
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6899999999998763
|
| >2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene} | Back alignment and structure |
|---|
Probab=84.23 E-value=5.4 Score=27.80 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=42.7
Q ss_pred EEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 282 SVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 282 ~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
.++|.+..+....+.+.++..|..+..++++.+...|.+-++.|...-.++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467888888888999999999999999999999998888889888654443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=84.15 E-value=1.3 Score=41.02 Aligned_cols=52 Identities=15% Similarity=-0.030 Sum_probs=33.2
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMR 129 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~ 129 (413)
+..|.-++|.|++|+|||..++-.+...... +.++++++-- .-..|+..++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS-SCTTHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC-CCHHHHHHHHH
Confidence 3345669999999999998776655554433 3477777653 33444444443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=84.12 E-value=0.76 Score=39.91 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCchhHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~ 96 (413)
++.+.+.+++|+|||.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45588899999999977643
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=84.01 E-value=1 Score=37.16 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=18.6
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
++++.++.|.|||..++..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 389999999999988765555443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.93 E-value=0.64 Score=41.46 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=26.7
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
|.-++|.+|+|+|||..++..+..... .+.+++++..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccccc
Confidence 456899999999999776544433322 23467787665443
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=83.91 E-value=1.6 Score=37.91 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.8
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999765
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.75 E-value=6.3 Score=35.66 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=53.3
Q ss_pred CceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCC
Q 015093 107 LQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDY 182 (413)
Q Consensus 107 ~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 182 (413)
.+.++||.|+++.-+....+.+.+. +..+..++|+.......... ....+|+|+|. ....+++..+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH------HHHTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcCCCccc
Confidence 3558999999999998888887764 67888899887765544332 35678999993 3345677777
Q ss_pred ccEEEE
Q 015093 183 IRMFVL 188 (413)
Q Consensus 183 ~~~iIi 188 (413)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=83.50 E-value=1.1 Score=37.40 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=45.9
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-----cccc-CCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQQ 347 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~~-G~d~~~ 347 (413)
...++||.+|+++.+.++++.+++. +..+..++|+.+... ....+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3458999999999999888888753 456777777755332 23344566688999994 2233 356777
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
+..+|+-+
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 88887644
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=83.48 E-value=0.58 Score=37.27 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=16.1
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
++..+++.|++|||||.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566999999999999876
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=83.34 E-value=0.89 Score=40.78 Aligned_cols=41 Identities=12% Similarity=0.019 Sum_probs=27.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
.|.-++|.+++|+|||..++..+...... +.+++|+..-..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCC
Confidence 34568999999999998776555544322 336777765433
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=83.31 E-value=0.55 Score=39.75 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999765
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=83.20 E-value=12 Score=35.63 Aligned_cols=98 Identities=9% Similarity=0.119 Sum_probs=65.1
Q ss_pred CchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEE
Q 015093 88 TGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVV 163 (413)
Q Consensus 88 sGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii 163 (413)
..+....+..+...+.....+.++||.|+++.-+..+.+.+.+... .+..+..++|+.......... ....+|+|
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 3343333334444444434456899999999999998888877532 266788889887765544332 35778999
Q ss_pred eChHHHHHHHHcCCCCCCCccEEEEccch
Q 015093 164 GTPGRVFDMLRRQSLRPDYIRMFVLDEAD 192 (413)
Q Consensus 164 ~T~~~l~~~~~~~~~~~~~~~~iIiDE~h 192 (413)
+|. ....+++..++++||.-..-
T Consensus 398 aT~------~~~~GiDip~v~~VI~~~~p 420 (563)
T 3i5x_A 398 CTD------VGARGMDFPNVHEVLQIGVP 420 (563)
T ss_dssp ECG------GGTSSCCCTTCCEEEEESCC
T ss_pred Ecc------hhhcCCCcccCCEEEEECCC
Confidence 994 34467777888888765543
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=83.18 E-value=0.77 Score=40.07 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.3
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+++.||+|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999765
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.18 E-value=0.77 Score=37.15 Aligned_cols=19 Identities=42% Similarity=0.403 Sum_probs=16.0
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666889999999999764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=83.06 E-value=0.49 Score=37.22 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=16.3
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|.-+.+.||.|||||..+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 34666899999999999764
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=83.05 E-value=0.54 Score=37.07 Aligned_cols=16 Identities=19% Similarity=0.271 Sum_probs=13.9
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-+++.|++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999765
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=83.04 E-value=0.65 Score=36.38 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999765
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.94 E-value=0.86 Score=40.14 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+++.||+|+|||..+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 367999999999999775
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=82.89 E-value=0.58 Score=36.60 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=13.9
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.|++|||||..+
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999775
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=82.75 E-value=2 Score=35.45 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=53.2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-c-----ccCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQ 346 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-~-----~~G~d~~ 346 (413)
...++||.+|+++.+.++++.+++. +..+..++|+.+..++...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999999999988888763 67788899998876554432 25789999962 2 2345667
Q ss_pred CCCEEEEcC
Q 015093 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
.++.+|+-+
T Consensus 166 ~~~~lViDE 174 (230)
T 2oxc_A 166 SIRLFILDE 174 (230)
T ss_dssp GCCEEEESS
T ss_pred cCCEEEeCC
Confidence 788887644
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=82.75 E-value=0.87 Score=36.77 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.0
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
+|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 4667899999999999764
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=82.65 E-value=0.71 Score=40.49 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=15.1
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
.++|.||||||||..+..
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999987643
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=82.50 E-value=0.5 Score=41.79 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=17.0
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+..|+.+.+.||||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34588899999999999964
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=82.48 E-value=0.64 Score=37.06 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455899999999999775
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=82.23 E-value=0.78 Score=37.73 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=15.9
Q ss_pred CCCcEEEeCCCCCchhHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~ 95 (413)
+.+-+++.||+||||++.+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 44557889999999998763
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=82.09 E-value=0.79 Score=39.75 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56889999999999765
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=82.07 E-value=7.1 Score=32.55 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=50.7
Q ss_pred CCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc-----ccCCCCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQV 348 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~-----~~G~d~~~~ 348 (413)
..++||.+|+++.+.++++.+++ .+..+..++|+.+.......+ ....+|+|+|. .+ ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 35899999999999888887765 356777788887654433222 34678999996 22 123567788
Q ss_pred CEEEEcC
Q 015093 349 SLVINYD 355 (413)
Q Consensus 349 ~~vi~~~ 355 (413)
..+|+-+
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 8887644
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.05 E-value=4.4 Score=35.10 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=54.1
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+++.-+....+.+... +..+..++|+.........+ .+..+|+|+|. +...+++...+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccce
Confidence 458999999999888777776553 77888999987765554433 45678999992 33456777788
Q ss_pred cEEEEccch
Q 015093 184 RMFVLDEAD 192 (413)
Q Consensus 184 ~~iIiDE~h 192 (413)
++||.=+.+
T Consensus 98 ~~VI~~d~p 106 (300)
T 3i32_A 98 DLVVHYRMP 106 (300)
T ss_dssp SEEEESSCC
T ss_pred eEEEEcCCC
Confidence 888754443
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=81.85 E-value=13 Score=34.38 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=21.1
Q ss_pred hhhhhCCCcEEEeCCCCCchhHHHHHHH
Q 015093 71 IVPFCKGLDVIQQAQSGTGKTATFCSGI 98 (413)
Q Consensus 71 ~~~~~~~~~~lv~~~tGsGKT~~~~~~i 98 (413)
+..+.+|+..++.++.|.|||..+...+
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~~l~ 172 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQELI 172 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHHHHH
Confidence 3445568889999999999997654333
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=81.78 E-value=0.76 Score=37.83 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.2
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..|+-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777999999999999654
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.75 E-value=3.5 Score=33.83 Aligned_cols=74 Identities=8% Similarity=0.134 Sum_probs=49.2
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh---CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-c-----cccCCCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS---RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-L-----LARGIDVQQV 348 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~-----~~~G~d~~~~ 348 (413)
.+.++||.+|+++.+.++++.+++ .+..+..++|+.+..++... +. ...+|+|+|. . ....+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456799999999999999888876 36778888888765443332 22 3478999995 1 2235677788
Q ss_pred CEEEEcC
Q 015093 349 SLVINYD 355 (413)
Q Consensus 349 ~~vi~~~ 355 (413)
+.+|+-+
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8888644
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=81.49 E-value=2.3 Score=48.32 Aligned_cols=47 Identities=23% Similarity=0.097 Sum_probs=31.1
Q ss_pred CHHHHHHHHhCCCCCCcHHHH-h---hhhhhhCCCcEEEeCCCCCchhHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQ-R---GIVPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~-~---~~~~~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
.+.+.+.+.+.++. +.+.+. + .++.+..+..++++||||||||.++-
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34556666667764 445442 2 23344456779999999999998763
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=81.41 E-value=0.84 Score=40.32 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.0
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
-++|.||||||||..+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478999999999987643
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.27 E-value=0.73 Score=36.60 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
|..+++.|++|||||..+
T Consensus 4 g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455899999999999876
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=81.20 E-value=2.1 Score=36.63 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=20.8
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~ 99 (413)
-+..|.-++|.+|+|+|||..+...+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 355678899999999999977654443
|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.17 E-value=0.83 Score=40.75 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=19.0
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.++.++.|.+ ++..|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3445566766 788999999999875
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=81.13 E-value=16 Score=34.99 Aligned_cols=89 Identities=10% Similarity=0.143 Sum_probs=61.4
Q ss_pred HHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHH
Q 015093 97 GILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDM 172 (413)
Q Consensus 97 ~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~ 172 (413)
.+...+.....+.++||.|+++.-+...++.+++... .+..+..++|+.......... ....+|+|+|.
T Consensus 277 ~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------ 349 (579)
T 3sqw_A 277 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------ 349 (579)
T ss_dssp HHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------
T ss_pred HHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------
Confidence 3333343334456899999999999998888877532 266788889887765543332 35778999993
Q ss_pred HHcCCCCCCCccEEEEccch
Q 015093 173 LRRQSLRPDYIRMFVLDEAD 192 (413)
Q Consensus 173 ~~~~~~~~~~~~~iIiDE~h 192 (413)
....+++..++++||.-..-
T Consensus 350 ~~~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 350 VGARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp GGTSSCCCTTCCEEEEESCC
T ss_pred hhhcCCCcccCCEEEEcCCC
Confidence 33457777888888866544
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=81.06 E-value=0.7 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.2
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|+.|||||..+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456899999999999765
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=80.95 E-value=0.8 Score=41.07 Aligned_cols=19 Identities=47% Similarity=0.559 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
++.+++.||+|+|||..+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4579999999999998763
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=80.93 E-value=0.82 Score=36.95 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.8
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+..+++.||.|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566899999999999765
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=80.85 E-value=4.1 Score=36.52 Aligned_cols=74 Identities=8% Similarity=0.210 Sum_probs=54.9
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-cc-----ccCCCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQ 347 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~-----~~G~d~~~ 347 (413)
..++||.+|++..+.++++.+.+. +..+..++|+.+..+... .+..+..+|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999888877663 688999999988765543 34456678999995 22 23456778
Q ss_pred CCEEEEcC
Q 015093 348 VSLVINYD 355 (413)
Q Consensus 348 ~~~vi~~~ 355 (413)
++.+|+-+
T Consensus 153 ~~~vViDE 160 (391)
T 1xti_A 153 IKHFILDE 160 (391)
T ss_dssp CSEEEECS
T ss_pred cCEEEEeC
Confidence 88887644
|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
Probab=80.67 E-value=1 Score=39.58 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=18.3
Q ss_pred hhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
++.++.|.+ ++..|.||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344456766 778999999999875
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=80.66 E-value=0.81 Score=36.96 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.0
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
++..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999776
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=80.45 E-value=1.1 Score=41.77 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.3
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
++++++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4679999999999998763
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=80.08 E-value=0.67 Score=37.03 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=15.1
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+..+++.|++|||||..+
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 413 | ||||
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 7e-56 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 1e-54 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 2e-54 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 9e-53 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 3e-46 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 4e-46 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 1e-44 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 3e-44 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 4e-44 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 4e-43 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 3e-38 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 8e-34 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 7e-33 | |
| d1s2ma2 | 171 | c.37.1.19 (A:252-422) Putative ATP-dependent RNA h | 1e-32 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 6e-32 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 8e-32 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 3e-26 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 1e-25 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-24 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 5e-23 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 7e-22 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 2e-19 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 1e-18 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 1e-18 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 2e-18 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-15 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 6e-14 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 7e-14 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 1e-09 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 3e-05 | |
| d2eyqa5 | 211 | c.37.1.19 (A:779-989) Transcription-repair couplin | 4e-05 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 3e-04 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 0.004 |
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 181 bits (460), Expect = 7e-56
Identities = 144/212 (67%), Positives = 168/212 (79%), Gaps = 1/212 (0%)
Query: 35 YDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94
++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P KG DVI QAQSGTGKTATF
Sbjct: 7 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 66
Query: 95 CSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRI 154
ILQQ++ + QALVLAPTRELAQQI+KV+ ALGDYMG HAC+GGT+VR + +
Sbjct: 67 AISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQK 126
Query: 155 LSAGV-HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213
L H++VGTPGRVFDML R+ L P YI+MFVLDEADEMLSRGFKDQIYDIFQ L
Sbjct: 127 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN 186
Query: 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKR 245
QV + SATMP + LE+T+KFM P+RILVK+
Sbjct: 187 TQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 218
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 178 bits (452), Expect = 1e-54
Identities = 137/209 (65%), Positives = 166/209 (79%)
Query: 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCS 96
+V +FD+MGL+E+LLRGIYAYGFEKPSAIQQR I KG DVI Q+QSGTGKTATF
Sbjct: 14 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 73
Query: 97 GILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156
+LQ LD + + QAL+LAPTRELA QI+K + ALGDYM V+ HAC+GGT+V ED R L
Sbjct: 74 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 133
Query: 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQV 216
G HVV GTPGRVFDM+RR+SLR I+M VLDEADEML++GFK+QIYD++++LP QV
Sbjct: 134 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 193
Query: 217 GVFSATMPPEALEITRKFMNKPVRILVKR 245
+ SAT+P E LE+T KFM P+RILVKR
Sbjct: 194 VLISATLPHEILEMTNKFMTDPIRILVKR 222
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 177 bits (450), Expect = 2e-54
Identities = 73/207 (35%), Positives = 117/207 (56%), Gaps = 3/207 (1%)
Query: 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSG 97
Y +F+ + L +N+L I GFEKP+ IQ + I F +++ QA++G+GKTA+F
Sbjct: 3 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP 62
Query: 98 ILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157
+ +L E+ +A++L PTRELA Q+ + +L +K+ GG ++ + L
Sbjct: 63 L-IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK- 120
Query: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217
++VVGTPGR+ D + R +L ++ F+LDEADEML+ GF + I ++
Sbjct: 121 NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRIL 180
Query: 218 VFSATMPPEALEITRKFMNKPVRILVK 244
+FSATMP E L + +K+M I K
Sbjct: 181 LFSATMPREILNLAKKYMGDYSFIKAK 207
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 173 bits (439), Expect = 9e-53
Identities = 127/210 (60%), Positives = 153/210 (72%), Gaps = 1/210 (0%)
Query: 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 93
+YD+V FD M L ENLLRG++ YGFE+PSAIQQR I+P +G DV+ QAQSGTGKT T
Sbjct: 4 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 63
Query: 94 FCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR 153
F LQ++D QAL+LAPTRELA QI+KV+ AL +M +KVHAC+GGTS ED
Sbjct: 64 FSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 123
Query: 154 ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGK 213
L +VVGTPGRVFD ++R+ R D I+MF+LDEADEMLS GFK+QIY IF LP
Sbjct: 124 GLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 182
Query: 214 IQVGVFSATMPPEALEITRKFMNKPVRILV 243
QV + SATMP + LE+T KFM PVRILV
Sbjct: 183 TQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 156 bits (394), Expect = 3e-46
Identities = 84/206 (40%), Positives = 114/206 (55%), Gaps = 3/206 (1%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
F LK LLR I GFE PS +Q I G+DV+ QA+SG GKTA F LQ
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 101 QLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGG-TSVREDQRILSA-G 158
QL+ + Q LV+ TRELA QI K YM A G S+++D+ +L
Sbjct: 62 QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNC 121
Query: 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVG 217
H+VVGTPGR+ + R +SL +I+ F+LDE D+ML + + + +IF+ P + QV
Sbjct: 122 PHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 181
Query: 218 VFSATMPPEALEITRKFMNKPVRILV 243
+FSAT+ E + RKFM P+ I V
Sbjct: 182 MFSATLSKEIRPVCRKFMQDPMEIFV 207
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 156 bits (396), Expect = 4e-46
Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 13/224 (5%)
Query: 33 VSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 92
S V ++FD + L + I +++P+ IQ+ I + D++ AQ+G+GKTA
Sbjct: 14 YSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTA 73
Query: 93 TFCSGILQQLDYESLQC---------QALVLAPTRELAQQIEKVMRALGDYMGVKVHACV 143
F I+ L + L + L+LAPTRELA QI + ++
Sbjct: 74 AFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVY 133
Query: 144 GGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQI 203
GG R + G H++V TPGR+ D + + + ++ + VLDEAD ML GF+ QI
Sbjct: 134 GGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQI 193
Query: 204 YDIFQHL----PGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243
I + Q +FSAT P E ++ F+ + + V
Sbjct: 194 RKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 150 bits (379), Expect = 1e-44
Identities = 117/168 (69%), Positives = 142/168 (84%)
Query: 246 DELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHT 305
DELTLEGIKQF V V++EEWK DTLCDLY+TL ITQ+VIF NT+RKVDWLT++MR + T
Sbjct: 1 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT 60
Query: 306 VSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 365
VS+ HGDM Q R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP E Y+H
Sbjct: 61 VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIH 120
Query: 366 RIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
RIGRSGR+GRKGVAINFV DD R+L DI+++Y+ I+E+P NVADLI
Sbjct: 121 RIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 168
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 149 bits (376), Expect = 3e-44
Identities = 102/161 (63%), Positives = 134/161 (83%)
Query: 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD 312
IKQF+VNV++EE+K + L DLY+++++TQ+VIF NTRRKV+ LT ++R+ TVSA + D
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 313 MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 372
+ Q RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP ENY+HRIGR GR
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120
Query: 373 FGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
FGRKGVAINFVT +D + ++++FY+ IEELP+++A L+
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 161
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 150 bits (379), Expect = 4e-44
Identities = 77/202 (38%), Positives = 120/202 (59%), Gaps = 1/202 (0%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
F+ LK LL GI+ G+EKPS IQ+ I G D++ +A++GTGK+ + +L+
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 101 QLDYESLQCQALVLAPTRELAQQI-EKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159
+LD + QA+V+ PTRELA Q+ + ++ G KV A GGT++R+D L V
Sbjct: 64 RLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTV 123
Query: 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219
HVV+ TPGR+ D++++ + D+++M VLDEAD++LS+ F + DI LP Q+ ++
Sbjct: 124 HVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLY 183
Query: 220 SATMPPEALEITRKFMNKPVRI 241
SAT P + + KP I
Sbjct: 184 SATFPLSVQKFMNSHLEKPYEI 205
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 148 bits (373), Expect = 4e-43
Identities = 85/202 (42%), Positives = 121/202 (59%)
Query: 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 99
++F+ LK LL GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L
Sbjct: 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 60
Query: 100 QQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159
+++ + + QAL++ PTRELA Q +V+R LG + G+ GGT++R+D L+ V
Sbjct: 61 EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETV 120
Query: 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVF 219
H++VGTPGRV D+ R+ +F++DEAD+MLSR FK I I LP Q +F
Sbjct: 121 HILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLF 180
Query: 220 SATMPPEALEITRKFMNKPVRI 241
SAT P E K ++KP I
Sbjct: 181 SATFPLTVKEFMVKHLHKPYEI 202
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 126 bits (316), Expect = 8e-34
Identities = 52/331 (15%), Positives = 95/331 (28%), Gaps = 56/331 (16%)
Query: 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135
K I G GKT + I+++ + L+LAPTR +A ++E+ +R
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRG--LRTLILAPTRVVAAEMEEALR------ 59
Query: 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195
+ R G +V F M +R + ++DEA
Sbjct: 60 ------GLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTD 113
Query: 196 SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ 255
+ Y + G+ +AT P F I+ + E+
Sbjct: 114 PASIAARGYISTRVEMGEAAGIFMTATPPG----SRDPFPQSNAPIMDEEREIPERSWNS 169
Query: 256 FHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQ 315
H V + ++V FV + + + + +R V
Sbjct: 170 GHEWVTDFKG---------------KTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFD 214
Query: 316 NSRDIIMREFRSGSSRVLITTDLLARGIDV---------QQVSLVINYDLPTQ------- 359
+ ++TTD+ G + + + VI D +
Sbjct: 215 SEYIKTRTNDW----DFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPM 270
Query: 360 ---PENYLHRIGRSGRFGRKGVAINFVTRDD 387
+ R GR GR + +
Sbjct: 271 PVTHSSAAQRRGRVGRNPKNENDQYIYMGEP 301
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 120 bits (302), Expect = 7e-33
Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 4/207 (1%)
Query: 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100
F + ++ I F KP+ IQ+R I +G ++ Q+Q+GTGKT + I++
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 101 QLDYESLQCQALVLA----PTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156
++ E + QA++ A ++ + K+ + + +GGT ++ L+
Sbjct: 62 KIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN 121
Query: 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQV 216
H+V+GTPGR+ D +R Q+L + V+DEAD ML GF + I +P +Q+
Sbjct: 122 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQM 181
Query: 217 GVFSATMPPEALEITRKFMNKPVRILV 243
VFSAT+P + +K+M P + V
Sbjct: 182 LVFSATIPEKLKPFLKKYMENPTFVHV 208
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 118 bits (297), Expect = 1e-32
Identities = 67/163 (41%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 247 ELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTV 306
ELTL+GI Q++ V++ + KL L L+ L I Q++IF N+ +V+ L ++ ++
Sbjct: 1 ELTLKGITQYYAFVEERQ-KLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSC 59
Query: 307 SATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 366
+H M Q R+ + EFR G R L+ +DLL RGID+Q V++VIN+D P E YLHR
Sbjct: 60 YYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHR 119
Query: 367 IGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANV 409
IGRSGRFG G+AIN + +D L I++ I +PA +
Sbjct: 120 IGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 162
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 120 bits (303), Expect = 6e-32
Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 19/152 (12%)
Query: 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD 312
I++ ++ E L E + + +IF ++++K D L ++ + A +
Sbjct: 11 IEEVALSTTGEIPFYGKAIPL-EVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRG 69
Query: 313 MDQNSRDI----------IMREFRSGSSRVLITTDLLARG---IDVQQVSLVINYDLPTQ 359
+D + + +G +I + + + LP
Sbjct: 70 LDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQD 129
Query: 360 PENYLHRIGRSGRFGRKGVAINFV---TRDDD 388
+ R GR+GR G+ G+ FV R
Sbjct: 130 AVSRTQRRGRTGR-GKPGIY-RFVAPGERPSG 159
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (290), Expect = 8e-32
Identities = 58/153 (37%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Query: 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD 312
I+Q +V V++ E + + LC L + ++F T+R L +R A HGD
Sbjct: 4 IEQSYVEVNENE-RFEALCRLLKNKEF-YGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 61
Query: 313 MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 372
+ Q+ R+ ++R F+ R+LI TD+++RGIDV ++ VINY LP PE+Y+HRIGR+GR
Sbjct: 62 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 121
Query: 373 FGRKGVAINFVTRDDDRMLADIQRFYNVVIEEL 405
G+KG AI+ + R + + L I+R + I++L
Sbjct: 122 AGKKGKAISIINRREYKKLRYIERAMKLKIKKL 154
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 104 bits (261), Expect = 3e-26
Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 21/212 (9%)
Query: 187 VLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 246
L A E+L + + L + + G A+ ++ + +K+
Sbjct: 81 KLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS---------KEIFSDKR---MKKA 128
Query: 247 ELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTV 306
L K+ ++ K + + + + + ++ ++F N R + +++
Sbjct: 129 ISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKA 188
Query: 307 SATHGDMDQNSR--------DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 358
G + + +I+ EF G VL+ T + G+DV +V LV+ Y+
Sbjct: 189 KRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP 248
Query: 359 QPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390
+ R GR+GR G I + +
Sbjct: 249 SAIRSIQRRGRTGR-HMPGRVIILMAKGTRDE 279
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 102 bits (254), Expect = 1e-25
Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 16/161 (9%)
Query: 258 VNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNS 317
+V + + TL + E L T +I+ T + + + + ++++ + +
Sbjct: 5 EDVAVNDESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKNKFR------IGIVTAT 57
Query: 318 RDIIMREFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLPTQPENYLHRIGRSGR 372
+ +F G LI T L RG+D+ + + + P ++ I
Sbjct: 58 KKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDS 113
Query: 373 FGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADLI 413
+ V + + + + I+E+ + ++
Sbjct: 114 LSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVM 154
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.7 bits (239), Expect = 2e-24
Identities = 57/159 (35%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Query: 252 GIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHG 311
G++Q++V + E K L DL + L Q VIFV + ++ L + ++ A H
Sbjct: 1 GLQQYYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 59
Query: 312 DMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 371
M Q R ++F+ R+L+ T+L RG+D+++V++ NYD+P + YLHR+ R+G
Sbjct: 60 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 119
Query: 372 RFGRKGVAINFVTRDDD-RMLADIQRFYNVVIEELPANV 409
RFG KG+AI FV+ ++D ++L D+Q + V I ELP +
Sbjct: 120 RFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 95.0 bits (235), Expect = 5e-23
Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 25/206 (12%)
Query: 52 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQA 111
+ +P AIQ+ + A +G GKT+ + L +
Sbjct: 33 FVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK---GKRC 89
Query: 112 LVLAPTRELAQQIEKVMRALGDYMGVKV------HACVGGTSVREDQRILSAGVHVVVGT 165
V+ PT L Q + +R + GV + +E+ +V+ T
Sbjct: 90 YVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITT 149
Query: 166 PGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-----------GFKDQIYDIFQHLPGKI 214
+ R + +D+ D +L GF + +
Sbjct: 150 TQFLSKHYRELG----HFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARG 205
Query: 215 QVGVFSATMPPE-ALEITRKFMNKPV 239
+ V +AT E+ R+ +N +
Sbjct: 206 CLMVSTATAKKGKKAELFRQLLNFDI 231
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 90.8 bits (224), Expect = 7e-22
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 17/208 (8%)
Query: 41 SFDSMGLKEN---LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG 97
+ + L+ +L+ + G+++ Q+ I G D + +G GK+ +
Sbjct: 3 QAEVLNLESGAKQVLQETF--GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP 60
Query: 98 ILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSA 157
L +V++P L + ++A G + +
Sbjct: 61 ALLLNG------LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG 114
Query: 158 GVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQ----IYDIFQHLPGK 213
+ ++ P R+ + L + +DEA + G + +
Sbjct: 115 QIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT 174
Query: 214 IQVGVFSATMPPEALE--ITRKFMNKPV 239
+ +AT + + +N P+
Sbjct: 175 LPFMALTATADDTTRQDIVRLLGLNDPL 202
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 83.5 bits (205), Expect = 2e-19
Identities = 25/190 (13%), Positives = 60/190 (31%), Gaps = 12/190 (6%)
Query: 41 SFDSM--GLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 98
+ + + + + G E+ Q + G +++ + GK
Sbjct: 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGK---TLLAE 58
Query: 99 LQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAG 158
+ + ++L + P R LA + + + + S E
Sbjct: 59 MAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD---- 114
Query: 159 VHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQ---IYDIFQHLPGKIQ 215
++V T + ++R ++ + V+DE + S + + + ++
Sbjct: 115 CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALR 174
Query: 216 VGVFSATMPP 225
V SAT P
Sbjct: 175 VIGLSATAPN 184
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 79.8 bits (196), Expect = 1e-18
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 13/138 (9%)
Query: 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD 312
I++ ++ E L E + + +IF ++++K D L ++ + +
Sbjct: 10 IEEVALSTTGEIPFYGKAIPL-EVIKGGRHLIFCHSKKKCDELAAKLVALGI-------N 61
Query: 313 MDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVS---LVINYDLPTQPENYLHRIGR 369
R + + + V++ TD L G S + P + R GR
Sbjct: 62 AVAYYRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGR 121
Query: 370 SGRFGRKGVAINFVTRDD 387
+GR G+ G+ FV +
Sbjct: 122 TGR-GKPGI-YRFVAPGE 137
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 81.5 bits (200), Expect = 1e-18
Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 260 VDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD 319
+ K+ L ++ E + +IF V S+ + A + R+
Sbjct: 74 AFNSKNKIRKLREILERHRKDKIIIFTRHNELVYR-----ISKVFLIPAITHRTSREERE 128
Query: 320 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA 379
I+ FR+G R ++++ +L GIDV ++ + Y+ R+GR R +
Sbjct: 129 EILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKE 188
Query: 380 ---INFVTRD 386
++R
Sbjct: 189 AVLYELISRG 198
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 80.9 bits (198), Expect = 2e-18
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 260 VDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRD 319
++K + LD L + +I+ N+R KV+ +++S+ + +A H ++ N R
Sbjct: 12 MEKFK-PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRA 70
Query: 320 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA 379
+ +F+ ++++ T GI+ V V+++D+P E+Y GR+GR G A
Sbjct: 71 DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 130
Query: 380 INFVTRDDDRM 390
+ F D
Sbjct: 131 MLFYDPADMAW 141
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 72.5 bits (176), Expect = 2e-15
Identities = 40/198 (20%), Positives = 73/198 (36%), Gaps = 5/198 (2%)
Query: 59 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118
+P Q+ I CK + + +G GKT +L + +LAPT+
Sbjct: 6 DLIQPRIYQEV-IYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVL--MLAPTK 62
Query: 119 ELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSL 178
L Q + R L + K+ A G S E + A V+V TP + + L +
Sbjct: 63 PLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRI 121
Query: 179 RPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKP 238
+ + + V DEA + I ++ V +A+ +I N
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLG 181
Query: 239 VRILVKRDELTLEGIKQF 256
+ + R E + + ++ +
Sbjct: 182 IEHIEYRSENSPD-VRPY 198
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 67.4 bits (164), Expect = 6e-14
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 281 QSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340
++++ V T R + LT + H ++D R ++R+ R G L+ +LL
Sbjct: 33 RTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLR 92
Query: 341 RGIDVQQVSLVINYDL-----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQ 395
G+D+ +VSLV D + + IGR+ R R G + R + M I+
Sbjct: 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEAMQRAIE 151
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 67.1 bits (163), Expect = 7e-14
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 281 QSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340
++++ T++ + LTD ++ V+ H ++ R I+R+ R G VL+ +LL
Sbjct: 33 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 92
Query: 341 RGIDVQQVSLVINYDLPT-----QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLA--- 392
G+D+ +VSLV D + + IGR+ R V + T +A
Sbjct: 93 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQE 152
Query: 393 -----DIQRFYNVVIEELPANV 409
IQ YN +P V
Sbjct: 153 TKRRRAIQEEYNRKHGIVPRTV 174
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 55.3 bits (132), Expect = 1e-09
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 41/156 (26%)
Query: 281 QSVIFVNTRRKVDWLTDQMRSRD------------------------------HTVSATH 310
++F +TRR + ++ + + H
Sbjct: 42 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 101
Query: 311 GDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI-------NYDLPTQPENY 363
+ R ++ FR G+ +V++ T LA G+++ +++ Y + Y
Sbjct: 102 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEY 161
Query: 364 LHRIGRSGRFGR--KGVAINFVTRDDDRMLADIQRF 397
GR+GR G +G AI V + D + ++R+
Sbjct: 162 KQMAGRAGRPGMDERGEAIIIVGKRDREIA--VKRY 195
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 41/233 (17%), Positives = 82/233 (35%), Gaps = 29/233 (12%)
Query: 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVR 240
+ + L + L + F Q + GKI V S+ +K N P
Sbjct: 14 EQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSIT------SLKKLCNHPA- 66
Query: 241 ILVKRDELTLEGIKQFHVNVDKEEW-----------KLDTLCDLYETLAITQS---VIFV 286
L+ LT E +++ + + K+ L + T S V+
Sbjct: 67 -LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVS 125
Query: 287 NTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS---RVLITTDLLARGI 343
N + +D R+R + G M R I+ F + SS ++++ G+
Sbjct: 126 NYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGL 185
Query: 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINFVTRD--DDRMLA 392
++ + ++ +D P N + R R G+K ++ ++++L
Sbjct: 186 NLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQ 238
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Score = 42.3 bits (99), Expect = 4e-05
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 283 VIFVNTRRKVDWLTDQMRSR---DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLL 339
V ++ + + + + ++ HG M + + +M +F VL+ T ++
Sbjct: 34 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 93
Query: 340 ARGIDVQQVSLVINYDLPTQPENYLHRI-GRSGRFGRKGVAINFVTRDDDRMLADIQRFY 398
GID+ + +I LH++ GR GR + A +R
Sbjct: 94 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLE 153
Query: 399 NVV 401
+
Sbjct: 154 AIA 156
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 39.1 bits (91), Expect = 3e-04
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 10/119 (8%)
Query: 280 TQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLL 339
++ + ++ ++++ + + II + G+ V I T++
Sbjct: 35 QPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMA 92
Query: 340 ARGIDVQQVSLVINYD--------LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRM 390
RG D++ V GRSGR G G+ +++ +D+ M
Sbjct: 93 GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELM 151
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 36.5 bits (84), Expect = 0.004
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 24/115 (20%)
Query: 281 QSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLA 340
+ F+ + R + + +R +V + + + ++ TD+
Sbjct: 38 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT----FEREYPTIKQKKPDFILATDIAE 93
Query: 341 RGIDVQQVSLVINYDLPTQPENY-------------------LHRIGRSGRFGRK 376
G ++ V V++ +P R GR GR +
Sbjct: 94 MGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.97 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.97 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.96 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.96 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.95 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.94 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.93 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.93 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.92 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.92 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.9 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.85 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.85 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.85 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.84 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.83 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.82 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.8 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.79 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.77 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.75 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.74 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.73 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.7 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.69 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.6 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.56 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.55 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.5 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.46 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 99.43 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 99.26 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 99.22 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.98 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.47 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 98.04 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 97.96 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.8 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 97.5 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.32 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.32 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.16 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 97.09 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.92 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.91 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 96.89 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.74 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.71 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.69 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 96.69 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.65 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.64 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.6 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 96.45 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.44 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.4 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.32 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 96.18 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 96.05 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.82 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 95.79 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.63 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.12 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 94.96 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.94 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 94.59 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.25 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.19 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.88 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 93.8 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 93.51 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 93.25 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 92.73 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.67 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 92.64 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.29 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 92.2 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.16 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.58 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.32 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.13 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.03 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 90.88 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 90.59 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.55 | |
| d2eyqa2 | 117 | Transcription-repair coupling factor, TRCF {Escher | 90.47 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.47 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.43 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 90.19 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.19 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.08 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 89.92 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.55 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 89.13 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.96 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 88.69 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 88.55 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 88.24 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 88.19 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 88.19 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 88.08 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.08 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.06 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.02 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 88.0 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.94 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 87.91 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 87.86 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 87.54 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.36 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 87.28 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 87.23 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 86.75 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 86.51 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 86.21 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 86.15 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 86.0 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 85.99 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 85.98 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.95 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 85.85 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 85.79 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 85.71 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 85.68 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.55 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 85.53 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 85.41 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 85.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.07 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 85.0 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.99 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.96 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 84.61 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.48 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 84.4 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.43 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 83.01 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 82.75 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 82.55 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 82.4 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 82.38 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 82.13 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 81.95 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 81.35 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 81.28 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 80.83 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 80.67 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 80.51 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-38 Score=266.98 Aligned_cols=207 Identities=65% Similarity=0.999 Sum_probs=194.6
Q ss_pred ccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 37 EVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
+...+|+++++++.+.++|++.||..|+++|..+++.+++|+|+++.+|||||||++|++|+++.+......++++|++|
T Consensus 14 ~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~P 93 (222)
T d2j0sa1 14 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 93 (222)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred CCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEecc
Confidence 33468999999999999999999999999999999999999999999999999999999999999988877889999999
Q ss_pred cHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 117 TRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 117 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
|++|+.|.++.+++++...++++..+.|+.........+..+++|+|+||+.+.+++......+.+++++|+||||.+.+
T Consensus 94 treLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~ 173 (222)
T d2j0sa1 94 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 173 (222)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred hHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhh
Confidence 99999999999999999899999999999988888777778899999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
.++...+..+++.++...|++++|||.+++..++.+.++.+|+.+.+
T Consensus 174 ~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V 220 (222)
T d2j0sa1 174 KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220 (222)
T ss_dssp TTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECC
T ss_pred cCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEE
Confidence 99999999999999999999999999999888999999999887654
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-37 Score=255.93 Aligned_cols=203 Identities=38% Similarity=0.635 Sum_probs=188.2
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccH
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTR 118 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~ 118 (413)
..+|+++++++++.+++.+.||..|+++|..+++.+++|+|+++.+|||||||++|++|+++.+.....++.+++++|++
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~ 81 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccccCcceEEEeecc
Confidence 36899999999999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHHHHhhccc-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 119 ELAQQIEKVMRALGDYM-GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 119 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
+|+.|..+.+..+.... +.......|+.........+...++|+|+||+++...+......+++++++|+||||.+.+.
T Consensus 82 el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~ 161 (206)
T d1veca_ 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST
T ss_pred hhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEecccccccc
Confidence 99999999998876654 46777777888777777777788999999999999999999889999999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEE
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRI 241 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 241 (413)
+|...+..+++.++++.|++++|||+++...++.+.++.+|..+
T Consensus 162 ~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I 205 (206)
T d1veca_ 162 DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred chHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999999999999999999999998754
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-37 Score=259.01 Aligned_cols=212 Identities=67% Similarity=1.056 Sum_probs=191.2
Q ss_pred ccccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEE
Q 015093 33 VSYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQAL 112 (413)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~l 112 (413)
.++.++..+|+++++++.+.+++.+.||..|+++|..+++.++.|+|+++++|||||||++|++|+++.+.....+++++
T Consensus 5 ~~~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~al 84 (218)
T d2g9na1 5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQAL 84 (218)
T ss_dssp CCCCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred CCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecccccCccEE
Confidence 45668889999999999999999999999999999999999999999999999999999999999999998877788999
Q ss_pred EEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH-HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccc
Q 015093 113 VLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ-RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 113 vl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 191 (413)
|++|+++|+.|.++.+.++....+.......++....... ......++|+|+||+.+..++.+....+++++++|+|||
T Consensus 85 il~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEa 164 (218)
T d2g9na1 85 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 164 (218)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred EEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeec
Confidence 9999999999999999999999888888887765543332 222346799999999999999998888999999999999
Q ss_pred hhhhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEec
Q 015093 192 DEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVK 244 (413)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~ 244 (413)
|.+.+.++...+..+++.++.+.|++++|||.+++...+.+.++.+|+.+.+.
T Consensus 165 D~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 165 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred chhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999877653
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-36 Score=254.20 Aligned_cols=208 Identities=61% Similarity=0.921 Sum_probs=186.1
Q ss_pred cccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEE
Q 015093 34 SYDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALV 113 (413)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lv 113 (413)
.++++..+|+++++++++.+++.+.||..|+++|..+++.++.|+|+++.+|||||||++|++++++.+.....++.+++
T Consensus 4 ~~~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~li 83 (212)
T d1qdea_ 4 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 83 (212)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred CCcccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhccCCCcceEE
Confidence 56778899999999999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred EcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 114 LAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 114 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
++|+++++.|....+..+............++.....+.... .+++|+|+||+++...+..+...+.+++++|+||||.
T Consensus 84 l~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~ 162 (212)
T d1qdea_ 84 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 162 (212)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHh-cCCcEEEECCCccccccccCceecCcceEEeehhhhh
Confidence 999999999999999999888888888888777665554443 3579999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 194 MLSRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
+.+.++...+..+++.++.++|++++|||.++....+.+.++.+|..+.
T Consensus 163 lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~ 211 (212)
T d1qdea_ 163 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 211 (212)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC
T ss_pred hcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999987653
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-36 Score=250.97 Aligned_cols=202 Identities=42% Similarity=0.639 Sum_probs=183.3
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
.|+++++++++.+++.+.||..|+++|..+++.+++|+|+++.+|||||||++|++|+++.+.....++++++++|+++|
T Consensus 2 ~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL 81 (207)
T d1t6na_ 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 81 (207)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred CccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchh
Confidence 58999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHhhcccC-ceEEEEECCcchHHHHHH-HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-
Q 015093 121 AQQIEKVMRALGDYMG-VKVHACVGGTSVREDQRI-LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR- 197 (413)
Q Consensus 121 ~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~- 197 (413)
+.|..+.++.+....+ .......|+......... ....++|+|+||+.+..++....+.++++.++|+||||.+.+.
T Consensus 82 ~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~ 161 (207)
T d1t6na_ 82 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL 161 (207)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSH
T ss_pred hHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcC
Confidence 9999999999987653 567777787776655444 3567899999999999999998889999999999999998874
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
++...+..+++.++++.|++++|||.+++..++.+.++.+|..+.
T Consensus 162 ~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~ 206 (207)
T d1t6na_ 162 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 206 (207)
T ss_dssp HHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEe
Confidence 788889999999999999999999999999999999999987664
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.7e-35 Score=245.73 Aligned_cols=202 Identities=35% Similarity=0.595 Sum_probs=183.7
Q ss_pred ccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCC-cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 39 YDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 39 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~-~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
+.+|+++++++++.+++.+.||..|+++|.++++.++.|+ ++++++|||+|||++|++++++..... .+++++|++|+
T Consensus 3 ~msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~-~~~~~lil~pt 81 (208)
T d1hv8a1 3 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 81 (208)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred ccCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccc-cCcceEEEeec
Confidence 4689999999999999999999999999999999998875 899999999999999999998876544 46799999999
Q ss_pred HHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 118 RELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 118 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
++|+.|..+.+..+....+.++....|+.....+.+... +++|+|+||+.|.+++.++...+++++++|+||||.+.+.
T Consensus 82 ~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~ 160 (208)
T d1hv8a1 82 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 160 (208)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred cccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-CCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcC
Confidence 999999999999999988999999999887776655544 5899999999999999998888999999999999999999
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEE
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRIL 242 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 242 (413)
++...+..+++.+++++|++++|||++++..++.+.++.++..+.
T Consensus 161 ~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~ 205 (208)
T d1hv8a1 161 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIK 205 (208)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEE
T ss_pred CChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEE
Confidence 999999999999999999999999999999999999998876654
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4e-35 Score=244.70 Aligned_cols=204 Identities=42% Similarity=0.640 Sum_probs=192.7
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
++|+++++++.+.+++++.||..|+++|..+++.+++|+|+++.+|||||||++|+++++..+.....+.++++++|+..
T Consensus 1 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~ 80 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE 80 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccccccccceeeccchh
Confidence 47999999999999999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCc
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGF 199 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~ 199 (413)
++.|....+..+....++++....|+.........+...++|+|+||+.|.+++......+.+++++|+||||.+.+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f 160 (206)
T d1s2ma1 81 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDF 160 (206)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHH
T ss_pred hhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhh
Confidence 99999999999999999999999999988888888888999999999999999999999999999999999999999889
Q ss_pred HHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 200 KDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
...+..+++.+++.+|++++|||++++..++...++.+|..+..
T Consensus 161 ~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~ 204 (206)
T d1s2ma1 161 KTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 204 (206)
T ss_dssp HHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESC
T ss_pred HHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999998876543
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=4.2e-35 Score=249.03 Aligned_cols=209 Identities=31% Similarity=0.491 Sum_probs=189.6
Q ss_pred ccccccCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc---------
Q 015093 35 YDEVYDSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE--------- 105 (413)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~--------- 105 (413)
..+...+|+++++++++.+++.++||..|+++|..+++.+++|+|+++++|||||||++|++++++.+...
T Consensus 16 ~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~ 95 (238)
T d1wrba1 16 ATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 95 (238)
T ss_dssp CCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------C
T ss_pred CCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccC
Confidence 34556899999999999999999999999999999999999999999999999999999999999987432
Q ss_pred cCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccE
Q 015093 106 SLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRM 185 (413)
Q Consensus 106 ~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~ 185 (413)
..+++++|++|+++|+.|..+.+..++...++++..+.|+.....+......+++|+|+||+.|..++......+.++++
T Consensus 96 ~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~ 175 (238)
T d1wrba1 96 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 175 (238)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred CCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccce
Confidence 33568999999999999999999999998899999999998888777777788999999999999999998888999999
Q ss_pred EEEccchhhhccCcHHHHHHHHhhCCC----CceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 186 FVLDEADEMLSRGFKDQIYDIFQHLPG----KIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 186 iIiDE~h~~~~~~~~~~~~~~~~~~~~----~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
+|+||||.+.+.++...+..+++.+.. +.|++++|||++.++..+.+.++.+|+.+.+
T Consensus 176 lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~v 237 (238)
T d1wrba1 176 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 237 (238)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred eeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999987642 5699999999999999999999999877654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=100.00 E-value=1.1e-34 Score=258.92 Aligned_cols=273 Identities=18% Similarity=0.146 Sum_probs=183.0
Q ss_pred hhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHH
Q 015093 73 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ 152 (413)
Q Consensus 73 ~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (413)
.+.+++++++.+|||||||++++.+++...... +.+++|++|+++|++|+.++++.+...... . ...
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--~~~~lvi~Ptr~La~q~~~~l~~~~~~~~~----~-------~~~ 71 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--GLRTLILAPTRVVAAEMEEALRGLPIRYQT----P-------AIR 71 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHTTTSCCBCCC---------------
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc--CCEEEEEccHHHHHHHHHHHHhcCCcceee----e-------EEe
Confidence 345789999999999999998877777654433 358999999999999999887765332211 0 011
Q ss_pred HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhC--CCCceEEEEeeeCChhHHHH
Q 015093 153 RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHL--PGKIQVGVFSATMPPEALEI 230 (413)
Q Consensus 153 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~--~~~~~~i~lSAT~~~~~~~~ 230 (413)
........++++|++.|....... ..+.+++++|+||+|++..+.+ ....++... ....+++++|||++.....
T Consensus 72 ~~~~~~~~i~~~t~~~l~~~~~~~-~~~~~~~~vViDE~H~~~~~~~--~~~~~l~~~~~~~~~~~v~~SAT~~~~~~~- 147 (305)
T d2bmfa2 72 AEHTGREIVDLMCHATFTMRLLSP-IRVPNYNLIIMDEAHFTDPASI--AARGYISTRVEMGEAAGIFMTATPPGSRDP- 147 (305)
T ss_dssp ----CCCSEEEEEHHHHHHHHTSS-SCCCCCSEEEEESTTCCSHHHH--HHHHHHHHHHHHTSCEEEEECSSCTTCCCS-
T ss_pred ecccCccccccCCcHHHHHHHhcC-ccccceeEEEeeeeeecchhhH--HHHHHHHHhhccccceEEEeecCCCcceee-
Confidence 112345689999999887766543 4456799999999998754321 122222221 2467899999999643211
Q ss_pred HHHhcCCCEEEEecCCccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeec
Q 015093 231 TRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATH 310 (413)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~ 310 (413)
...... .+.......... ..... ...+ ....++++|||++++.++.+++.|++.++.+..+|
T Consensus 148 ---~~~~~~------------~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~ 209 (305)
T d2bmfa2 148 ---FPQSNA------------PIMDEEREIPER-SWNSG-HEWV-TDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLS 209 (305)
T ss_dssp ---SCCCSS------------CEEEEECCCCCS-CCSSC-CHHH-HSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECC
T ss_pred ---ecccCC------------cceEEEEeccHH-HHHHH-HHHH-HhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeC
Confidence 000000 000000001110 00000 1111 22457899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC--------------------CCCChhHHHhhhccc
Q 015093 311 GDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD--------------------LPTQPENYLHRIGRS 370 (413)
Q Consensus 311 ~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~--------------------~~~s~~~~~Q~~GR~ 370 (413)
|++.... ...+++|..+++++|++++.|+|+ .++.||..+ .|.|..+|.||+||+
T Consensus 210 ~~~~~~~----~~~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~ 284 (305)
T d2bmfa2 210 RKTFDSE----YIKTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRV 284 (305)
T ss_dssp TTCHHHH----GGGGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTS
T ss_pred CcChHHH----HhhhhccchhhhhhhHHHHhcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCc
Confidence 9986443 346788999999999999999999 455655322 356889999999999
Q ss_pred CCCCCcceEEEEecc
Q 015093 371 GRFGRKGVAINFVTR 385 (413)
Q Consensus 371 ~R~g~~g~~~~~~~~ 385 (413)
||.|+.+....++..
T Consensus 285 GR~~~~~~~~~~~~~ 299 (305)
T d2bmfa2 285 GRNPKNENDQYIYMG 299 (305)
T ss_dssp SCSSSCCCEEEEECS
T ss_pred CcCCCCceEEEEECC
Confidence 999987766666553
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=5.1e-33 Score=233.23 Aligned_cols=203 Identities=33% Similarity=0.524 Sum_probs=179.5
Q ss_pred CccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 41 SFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
.|+++++++++.+.+++.||..|+++|.++++.++.|+|+++++|||||||++|++++++.+.........++++|+..+
T Consensus 2 ~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~ 81 (209)
T d1q0ua_ 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTREL 81 (209)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred ccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccccccccccccccccch
Confidence 68999999999999999999999999999999999999999999999999999999999999888778889999999999
Q ss_pred HHHHHHHHHHhhccc----CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhc
Q 015093 121 AQQIEKVMRALGDYM----GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLS 196 (413)
Q Consensus 121 ~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 196 (413)
+.+....+....... ...+....++............+++|+|+||+.+...+.+....+.+++++|+||||.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~ 161 (209)
T d1q0ua_ 82 ATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLD 161 (209)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHH
T ss_pred hHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccc
Confidence 998888777654443 3455566666654444444456789999999999999999888889999999999999999
Q ss_pred cCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCCEEEEe
Q 015093 197 RGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKPVRILV 243 (413)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~ 243 (413)
.++...+..++..++++.|++++|||++++..++++.++.+|..+.+
T Consensus 162 ~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 162 MGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp TTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred cccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999998876653
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-32 Score=215.35 Aligned_cols=161 Identities=63% Similarity=1.012 Sum_probs=149.9
Q ss_pred ceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+++++..+...+.+.+.|..+++..+..++||||+++..++.+++.|...++.+..+||+++..+|.++++.|+.|+.++
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~i 80 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 80 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccce
Confidence 35777778777889999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCcchhcc
Q 015093 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPANVADL 412 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (413)
||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.|++++++.+...+..+.++++..++.+|.++.+|
T Consensus 81 Lv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~~~~~l 160 (162)
T d1fuka_ 81 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 160 (162)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTTT
T ss_pred eeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCChHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C
Q 015093 413 I 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 161 ~ 161 (162)
T d1fuka_ 161 L 161 (162)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-32 Score=216.60 Aligned_cols=167 Identities=69% Similarity=1.142 Sum_probs=160.9
Q ss_pred ccccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHh
Q 015093 247 ELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFR 326 (413)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 326 (413)
+.+.+++++++..++....+...|..+++.....++||||++++.++.+++.|...++.+..+||+++..+|.++++.|+
T Consensus 2 ~~tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk 81 (168)
T d2j0sa2 2 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 81 (168)
T ss_dssp GCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHh
Confidence 45678999999999988889999999999998899999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCC
Q 015093 327 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELP 406 (413)
Q Consensus 327 ~~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (413)
+|+.++||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++++.+.+...+..+++++...++.+|
T Consensus 82 ~g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p 161 (168)
T d2j0sa2 82 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 161 (168)
T ss_dssp HTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred cCCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccC
Q 015093 407 ANVADLI 413 (413)
Q Consensus 407 ~~~~~~~ 413 (413)
.++.|++
T Consensus 162 ~~~~dii 168 (168)
T d2j0sa2 162 MNVADLI 168 (168)
T ss_dssp SCCTTTC
T ss_pred cChHHhC
Confidence 9999875
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-30 Score=209.21 Aligned_cols=164 Identities=40% Similarity=0.693 Sum_probs=156.0
Q ss_pred cccCCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhc
Q 015093 248 LTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRS 327 (413)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 327 (413)
.+++++.+++..++. ..+...|.++++....+++||||++++.++.++..|...|+.+..+||+++..+|.++++.|++
T Consensus 2 ~tl~~i~q~yi~v~~-~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~ 80 (171)
T d1s2ma2 2 LTLKGITQYYAFVEE-RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ 80 (171)
T ss_dssp CBCTTEEEEEEECCG-GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCccceEEEEEEcCH-HHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhccc
Confidence 456788999888776 6799999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccCCc
Q 015093 328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEELPA 407 (413)
Q Consensus 328 ~~~~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (413)
|..++||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.|+.|+++.+...+..+.++++...+++|.
T Consensus 81 ~~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~~~~p~ 160 (171)
T d1s2ma2 81 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 160 (171)
T ss_dssp TSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred CccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhcc
Q 015093 408 NVADL 412 (413)
Q Consensus 408 ~~~~~ 412 (413)
++-+.
T Consensus 161 ~~d~~ 165 (171)
T d1s2ma2 161 TIDKS 165 (171)
T ss_dssp SCCGG
T ss_pred ccchh
Confidence 87653
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.7e-29 Score=199.46 Aligned_cols=156 Identities=35% Similarity=0.656 Sum_probs=144.1
Q ss_pred ceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 253 IKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+.+++..+.. ..+.+.|.++++....+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.++
T Consensus 2 l~q~~v~~~~-~~K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~i 80 (168)
T d1t5ia_ 2 LQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 80 (168)
T ss_dssp CEEEEEECCG-GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cEEEEEEeCh-HHHHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcccccee
Confidence 5677777765 789999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccc-cHHHHHHHHHHhccccccCCcch
Q 015093 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DDRMLADIQRFYNVVIEELPANV 409 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
||||+++++|+|+|.+++||++++|.++..|+||+||+||.|+.|.|++++++. +...+..+.+.+...++++|+++
T Consensus 81 Lv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~elp~~~ 158 (168)
T d1t5ia_ 81 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158 (168)
T ss_dssp EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred eeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccCCchh
Confidence 999999999999999999999999999999999999999999999999999875 55678889999999999999775
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=1.5e-28 Score=194.45 Aligned_cols=153 Identities=37% Similarity=0.672 Sum_probs=143.0
Q ss_pred CCceEEEEEeCccccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCC
Q 015093 251 EGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSS 330 (413)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 330 (413)
.++.+.+..++. ..+...|..+++.. +.++||||++++.++.+++.|++.|+.+..+|++++..+|..+++.|++|+.
T Consensus 2 ~nI~~~~i~v~~-~~K~~~L~~ll~~~-~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~ 79 (155)
T d1hv8a2 2 ANIEQSYVEVNE-NERFEALCRLLKNK-EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 79 (155)
T ss_dssp SSSEEEEEECCG-GGHHHHHHHHHCST-TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred CCeEEEEEEeCh-HHHHHHHHHHHccC-CCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccc
Confidence 357778887766 68999999998764 4689999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHHhccccccC
Q 015093 331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRFYNVVIEEL 405 (413)
Q Consensus 331 ~vli~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (413)
++||||+++++|+|+|.+++||++++|+|+..|+||+||+||.|+.|.+++++++.|...+..+.+.++..++++
T Consensus 80 ~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~i~~l 154 (155)
T d1hv8a2 80 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 154 (155)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred eeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887765
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-26 Score=189.69 Aligned_cols=131 Identities=24% Similarity=0.400 Sum_probs=124.2
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCC
Q 015093 264 EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGI 343 (413)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 343 (413)
..+++.|..+++.....++||||++++.++.+++.|...++.+..+||+++..+|.++++.|++|+.+|||||+++++|+
T Consensus 15 ~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~~~Gi 94 (200)
T d1oywa3 15 FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 94 (200)
T ss_dssp SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred CcHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecchhhhcc
Confidence 45788999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
|+|++++||++++|.|+..|+|++||+||.|++|.+++|+.+.+...+..+
T Consensus 95 D~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~ 145 (200)
T d1oywa3 95 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 145 (200)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998877666543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.94 E-value=3e-27 Score=196.52 Aligned_cols=182 Identities=16% Similarity=0.222 Sum_probs=139.1
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHH
Q 015093 47 LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~ 126 (413)
+++.+...|++.|+.+|+|+|.++++.+.+|+++++++|||+|||.+++++++..+.+. +++++++|+++|+.|+.+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~~---~~vl~l~P~~~L~~q~~~ 86 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG---GKSLYVVPLRALAGEKYE 86 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhcc---CcceeecccHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999988887766443 489999999999999999
Q ss_pred HHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHH--
Q 015093 127 VMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIY-- 204 (413)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~-- 204 (413)
.++++... ...+....++...... ....++++++|+..+...+......+..+++||+||+|.+.+..+.....
T Consensus 87 ~~~~~~~~-~~~v~~~~~~~~~~~~---~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~ 162 (202)
T d2p6ra3 87 SFKKWEKI-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEIL 162 (202)
T ss_dssp HHTTTTTT-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHH
T ss_pred HHHHHhhc-cccceeeccCcccccc---cccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHH
Confidence 99887653 3455555555432221 12457899999999999888877777788999999999987665443333
Q ss_pred -HHHhhCCCCceEEEEeeeCChhHHHHHHHhcCC
Q 015093 205 -DIFQHLPGKIQVGVFSATMPPEALEITRKFMNK 237 (413)
Q Consensus 205 -~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~ 237 (413)
..++..+++.++++||||+++ ..++. .+++.
T Consensus 163 l~~i~~~~~~~~~l~lSATl~n-~~~~~-~~l~~ 194 (202)
T d2p6ra3 163 VTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDA 194 (202)
T ss_dssp HHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTC
T ss_pred HHHHHhcCCCCcEEEEcCCCCc-HHHHH-HHcCC
Confidence 334445667899999999864 44554 44443
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=2e-25 Score=185.54 Aligned_cols=165 Identities=21% Similarity=0.160 Sum_probs=131.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+||+||.++++.+. ++++++++|||+|||+++++++...+... +.+++|++|+++|++|+.+++.++....+..+..
T Consensus 9 ~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~~--~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (200)
T d1wp9a1 9 QPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKY--GGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (200)
T ss_dssp CCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHHS--CSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHhc--CCcEEEEcCchHHHHHHHHHHHHhhcccccceee
Confidence 79999999998875 55799999999999999887776655432 3489999999999999999999998877888888
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
..++........... ..+++++|++.+...+........+++++|+||||.+.+......+...+......++++++||
T Consensus 86 ~~~~~~~~~~~~~~~-~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~SA 164 (200)
T d1wp9a1 86 LTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (200)
T ss_dssp ECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eecccchhHHHHhhh-cccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEEEEEe
Confidence 877776655544443 3589999999999998888888888999999999998765544444444444455788999999
Q ss_pred eCChhHHHH
Q 015093 222 TMPPEALEI 230 (413)
Q Consensus 222 T~~~~~~~~ 230 (413)
||.......
T Consensus 165 Tp~~~~~~~ 173 (200)
T d1wp9a1 165 SPGSTPEKI 173 (200)
T ss_dssp CSCSSHHHH
T ss_pred cCCCcHHHH
Confidence 997554443
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=3.2e-27 Score=197.18 Aligned_cols=188 Identities=16% Similarity=0.174 Sum_probs=138.8
Q ss_pred CccCCCCCHHHHHHHHhC-CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 41 SFDSMGLKENLLRGIYAY-GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 41 ~~~~~~l~~~~~~~l~~~-~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
..+.++|++...+.|++. |+..+||+|.++++++..|+++++++|||||||+++.++++.. ..++++++|+++
T Consensus 3 ~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~------~~~~~~v~P~~~ 76 (206)
T d1oywa2 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLIS 76 (206)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHH
T ss_pred chhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc------cCceEEeccchh
Confidence 456788999999999886 9999999999999999999999999999999999998888753 348999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCc----chHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGT----SVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
|++|+.+.++.+... ........ .............+|+++|+..+.............++++|+||||.+.
T Consensus 77 L~~q~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~ 152 (206)
T d1oywa2 77 LMKDQVDQLQANGVA----AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (206)
T ss_dssp HHHHHHHHHHHTTCC----EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred hhhhHHHHHHhhccc----ccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeee
Confidence 999999999887532 22222222 2222233345568899999988854433333345568999999999886
Q ss_pred ccCcH-----HHHHHHHhhCCCCceEEEEeeeCChhHHH-HHHHh-cCCCE
Q 015093 196 SRGFK-----DQIYDIFQHLPGKIQVGVFSATMPPEALE-ITRKF-MNKPV 239 (413)
Q Consensus 196 ~~~~~-----~~~~~~~~~~~~~~~~i~lSAT~~~~~~~-~~~~~-~~~~~ 239 (413)
+++.. ..+..+...++ +.|++++|||+++...+ +.+.+ +.+|.
T Consensus 153 ~~~~~~~~~~~~~~~l~~~~~-~~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 153 QWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp TTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred ccccchHHHHHHHHHHHHhCC-CCceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 55421 22334445554 68999999999887654 45543 56663
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=1.7e-24 Score=170.15 Aligned_cols=128 Identities=24% Similarity=0.344 Sum_probs=109.8
Q ss_pred HHHHHHHHHH-h-cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCC
Q 015093 266 KLDTLCDLYE-T-LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGI 343 (413)
Q Consensus 266 ~~~~l~~~~~-~-~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 343 (413)
..+.+...+. . ..++++||||++++.|+.+++.|.+.|+.+..+||+++..+|.++++.|++|+++|||+|+++++|+
T Consensus 16 qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~Gi 95 (174)
T d1c4oa2 16 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 95 (174)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeec
Confidence 4444444443 3 3567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC-----ChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 344 DVQQVSLVINYDLPT-----QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 344 d~~~~~~vi~~~~~~-----s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
|+|++++||++++|. |...|.|++||+||.|+ |.+++++......+.+.+
T Consensus 96 Dip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~~~~~i 150 (174)
T d1c4oa2 96 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEAMQRAI 150 (174)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHHHHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCHHHHHHH
Confidence 999999999999775 44779999999999764 888888877665544433
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=1.9e-24 Score=184.18 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=127.2
Q ss_pred HHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHH
Q 015093 49 ENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 49 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
+.+.+ +.+.++.+|+++|..+++.+++|+++++++|||+|||++++++++....+ +.+++|++|+++|++|+.+++
T Consensus 31 ~~~~~-~~~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~---~~rvliv~Pt~~La~Q~~~~l 106 (237)
T d1gkub1 31 KEFVE-FFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSLLVIQAAETI 106 (237)
T ss_dssp HHHHH-HHHTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT---SCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHH-HHHhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHh---cCeEEEEeccHHHHHHHHHHH
Confidence 34444 44557789999999999999999999999999999999998888766544 348999999999999999999
Q ss_pred HHhhcccCce----EEEEECCcchHHHHHHH--hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHH
Q 015093 129 RALGDYMGVK----VHACVGGTSVREDQRIL--SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQ 202 (413)
Q Consensus 129 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~ 202 (413)
+++....++. .....++.......... ...++|+|+||+.|.+.. ....++++||+||+|.+.+... .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~----~~~~~~~~vVvDE~d~~l~~~~--~ 180 (237)
T d1gkub1 107 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY----RELGHFDFIFVDDVDAILKASK--N 180 (237)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCS----TTSCCCSEEEESCHHHHHTSTH--H
T ss_pred HHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhh----hhcCCCCEEEEEChhhhhhccc--c
Confidence 9988766543 34444444444333333 235789999999876533 2355689999999999875442 2
Q ss_pred HHHHHhh-------------CCCCceEEEEeeeCChhHHH-HHHHhcC
Q 015093 203 IYDIFQH-------------LPGKIQVGVFSATMPPEALE-ITRKFMN 236 (413)
Q Consensus 203 ~~~~~~~-------------~~~~~~~i~lSAT~~~~~~~-~~~~~~~ 236 (413)
+...+.. .+...+++++|||+++.... ..+.+++
T Consensus 181 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~ 228 (237)
T d1gkub1 181 VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN 228 (237)
T ss_dssp HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC
T ss_pred hhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhC
Confidence 2222222 13456799999998754433 3344443
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.90 E-value=2.7e-23 Score=166.31 Aligned_cols=122 Identities=25% Similarity=0.361 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccC
Q 015093 265 WKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARG 342 (413)
Q Consensus 265 ~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G 342 (413)
...+.+...+.+. .+.+++|||++++.++.++..|++.|+.+..+||++++.+|.++++.|++|+.+|||||+++++|
T Consensus 15 ~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rG 94 (181)
T d1t5la2 15 GQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 94 (181)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSS
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHcc
Confidence 3444444444332 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCC-----ChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 343 IDVQQVSLVINYDLPT-----QPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 343 ~d~~~~~~vi~~~~~~-----s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
+|+|++++||+++.|. |...|+||+||+||.|. |.+++++....
T Consensus 95 iDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~~~ 143 (181)
T d1t5la2 95 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-GHVIMYADTIT 143 (181)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCC
T ss_pred CCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccC-ceeEeecchhh
Confidence 9999999999999985 67899999999999875 55555554443
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.85 E-value=7.5e-22 Score=170.90 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=113.9
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+||+||.+++..+++++..++.+|||+|||+++...+.... ... ..++||+||+++|+.||.+++.+++......+..
T Consensus 113 ~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~-~~~-~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~ 190 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYL-ENY-EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHH-HHC-SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred ccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhh-hcc-cceEEEEEcCchhHHHHHHHHHHhhcccccccee
Confidence 79999999999999999999999999999998765443332 222 3489999999999999999999987655555656
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
..++...... .....+++++|++++..... ..++.+++||+||||++. ...+..++..+.+....++|||
T Consensus 191 ~~~g~~~~~~---~~~~~~i~i~t~qs~~~~~~---~~~~~f~~VIvDEaH~~~----a~~~~~il~~~~~~~~rlGlTa 260 (282)
T d1rifa_ 191 IGGGASKDDK---YKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTTC---CCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECS
T ss_pred ecceeccccc---ccccceEEEEeeehhhhhcc---cccCCCCEEEEECCCCCC----chhHHHHHHhccCCCeEEEEEe
Confidence 6555442221 12346899999988754322 234568999999999874 3456677777765556799999
Q ss_pred eCChh
Q 015093 222 TMPPE 226 (413)
Q Consensus 222 T~~~~ 226 (413)
||...
T Consensus 261 T~~~~ 265 (282)
T d1rifa_ 261 SLRDG 265 (282)
T ss_dssp SCCTT
T ss_pred ecCCC
Confidence 98654
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.85 E-value=3.5e-21 Score=159.46 Aligned_cols=136 Identities=17% Similarity=0.170 Sum_probs=103.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
+|++||.++++.+.++++.++.+|||+|||++++..+... +.++||+||+++|++||.++++.+... .+..
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~Liv~p~~~L~~q~~~~~~~~~~~---~~~~ 140 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIFGEE---YVGE 140 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGGCGG---GEEE
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHHHh------cCceeEEEcccchHHHHHHHHHhhccc---chhh
Confidence 7999999999999999999999999999999876554332 347999999999999999999887543 3444
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
..|+.. ...+++++|++++....... ...+++||+||||++.+..+ ..++..++ ...+++|||
T Consensus 141 ~~~~~~---------~~~~i~i~t~~~~~~~~~~~---~~~~~lvIiDEaH~~~a~~~----~~i~~~~~-~~~~lgLTA 203 (206)
T d2fz4a1 141 FSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESY----VQIAQMSI-APFRLGLTA 203 (206)
T ss_dssp ESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSEEEEEEE
T ss_pred cccccc---------cccccccceehhhhhhhHhh---CCcCCEEEEECCeeCCcHHH----HHHHhccC-CCcEEEEec
Confidence 444332 34579999999987655432 23478999999999865443 34555554 456789999
Q ss_pred eC
Q 015093 222 TM 223 (413)
Q Consensus 222 T~ 223 (413)
|+
T Consensus 204 Tl 205 (206)
T d2fz4a1 204 TF 205 (206)
T ss_dssp SC
T ss_pred CC
Confidence 97
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.85 E-value=7e-22 Score=150.61 Aligned_cols=104 Identities=24% Similarity=0.411 Sum_probs=92.5
Q ss_pred HHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE
Q 015093 274 YETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353 (413)
Q Consensus 274 ~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~ 353 (413)
++....+++||||++++.|+.+++.|++.|+.+..+|++++. +.|++|+.++||||+++++|+| |+++.||+
T Consensus 30 l~~~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~-------~~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~ 101 (138)
T d1jr6a_ 30 LEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPTNGDVVVVATDALMTGFT-GDFDSVID 101 (138)
T ss_dssp HHHHTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCS-------CCCTTSSCEEEEESSSSCSSSC-CCBSEEEE
T ss_pred HhhcCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchh-------hhhhhhhcceeehhHHHHhccc-cccceEEE
Confidence 345567899999999999999999999999999999999984 4578899999999999999999 99999998
Q ss_pred cC----CCCChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 354 YD----LPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 354 ~~----~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
++ +|.+...|+||+||+|| |++|. ++|+.+.+
T Consensus 102 ~~~~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 102 CNTSDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp CSEETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred EEecCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 54 68999999999999999 89995 66777654
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=8.3e-20 Score=150.94 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhhhhhhhC----C--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 46 GLKENLLRGIYAYGFEKPSAIQQRGIVPFCK----G--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~----~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
..+....+.+.+.-...+++-|..+++.+.+ + .+.+++|.||||||.+|+.++...+..+ .++++++|+..
T Consensus 39 ~~~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g---~qv~~l~Pt~~ 115 (233)
T d2eyqa3 39 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH---KQVAVLVPTTL 115 (233)
T ss_dssp CCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT---CEEEEECSSHH
T ss_pred CCCHHHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcC---CceEEEccHHH
Confidence 4455555555444334899999999988754 3 3589999999999999999998887654 49999999999
Q ss_pred HHHHHHHHHHHhhcccCceEEEEECCcchHHHH----HHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhh
Q 015093 120 LAQQIEKVMRALGDYMGVKVHACVGGTSVREDQ----RILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEML 195 (413)
Q Consensus 120 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 195 (413)
|+.|+++.++++....+..+..+++........ ....+..+|+|+|...+. ....+.++++||+||-|++.
T Consensus 116 La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~-----~~~~f~~LgLiIiDEeH~fg 190 (233)
T d2eyqa3 116 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFG 190 (233)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSC
T ss_pred hHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhc-----cCCccccccceeeechhhhh
Confidence 999999999999888899999999987755443 334567899999966554 44566789999999999864
Q ss_pred ccCcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHH
Q 015093 196 SRGFKDQIYDIFQHLPGKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 231 (413)
... - +.++....++.++.+||||.+......
T Consensus 191 ~kQ----~-~~l~~~~~~~~~l~~SATPiprtl~~~ 221 (233)
T d2eyqa3 191 VRH----K-ERIKAMRANVDILTLTATPIPRTLNMA 221 (233)
T ss_dssp HHH----H-HHHHHHHTTSEEEEEESSCCCHHHHHH
T ss_pred hHH----H-HHHHhhCCCCCEEEEecchhHHHHHHH
Confidence 322 1 222333446889999999998765443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=3.9e-20 Score=155.92 Aligned_cols=170 Identities=20% Similarity=0.227 Sum_probs=129.8
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhhhhhhhC----C--CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 48 KENLLRGIYAYGFEKPSAIQQRGIVPFCK----G--LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 48 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~----~--~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
.+.....++...| +|++-|.++++.+.+ + .+.+++|.||||||.+|+.+++..+..+. ++++++||..|+
T Consensus 70 ~~l~~~f~~~LPF-eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~---q~~~m~Pt~~La 145 (264)
T d1gm5a3 70 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILA 145 (264)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS---CEEEECSCHHHH
T ss_pred hHHHHHHHhhccc-cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhccc---ceeEEeehHhhh
Confidence 3445556666777 799999999998854 2 35899999999999999999988876654 899999999999
Q ss_pred HHHHHHHHHhhcccCceEEEEECCcchHHHHHH----HhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc
Q 015093 122 QQIEKVMRALGDYMGVKVHACVGGTSVREDQRI----LSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR 197 (413)
Q Consensus 122 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 197 (413)
.|+++.++++....+..+..++|+......... ..++.+|+|+|..-+. ....+.++++||+||-|++...
T Consensus 146 ~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~-----~~~~f~~LglviiDEqH~fgv~ 220 (264)
T d1gm5a3 146 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-----EDVHFKNLGLVIIDEQHRFGVK 220 (264)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-----HCCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhc-----CCCCccccceeeeccccccchh
Confidence 999999999999889999999998876554333 3457899999976554 2344567899999999997543
Q ss_pred CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHH
Q 015093 198 GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEIT 231 (413)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~ 231 (413)
... .+......+.++.+||||.+......
T Consensus 221 Qr~-----~l~~~~~~~~~l~~SATPiprtl~~~ 249 (264)
T d1gm5a3 221 QRE-----ALMNKGKMVDTLVMSATPIPRSMALA 249 (264)
T ss_dssp --C-----CCCSSSSCCCEEEEESSCCCHHHHHH
T ss_pred hHH-----HHHHhCcCCCEEEEECCCCHHHHHHH
Confidence 321 12222346789999999988765444
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.82 E-value=2.9e-20 Score=162.53 Aligned_cols=123 Identities=24% Similarity=0.429 Sum_probs=106.9
Q ss_pred HHHHHHHH----HHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCC--------CCHHHHHHHHHHHhcCCCeEE
Q 015093 266 KLDTLCDL----YETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGD--------MDQNSRDIIMREFRSGSSRVL 333 (413)
Q Consensus 266 ~~~~l~~~----~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vl 333 (413)
+...+.++ +....+.++||||++++.++.+++.|.+.++.+..++|. ++..+|.++++.|++|+++||
T Consensus 144 K~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vL 223 (286)
T d1wp9a2 144 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 223 (286)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEE
Confidence 44444444 445677899999999999999999999999998888774 555688999999999999999
Q ss_pred EEeCccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHH
Q 015093 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 334 i~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
|||+++++|+|+|++++||++++|+++..|+||+||+||. ++|.++.++++.+.+
T Consensus 224 v~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~-~~~~~~~l~~~~~~e 278 (286)
T d1wp9a2 224 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRD 278 (286)
T ss_dssp EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC-CCSEEEEEEETTSHH
T ss_pred EEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999999999999999999999999996 479999999987655
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=6e-20 Score=150.36 Aligned_cols=121 Identities=21% Similarity=0.374 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhC------------------------------CCeeEeecCCCCHH
Q 015093 267 LDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSR------------------------------DHTVSATHGDMDQN 316 (413)
Q Consensus 267 ~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~------------------------------~~~~~~~~~~~~~~ 316 (413)
.+.+.+.+++ ++++||||+|++.|+.++..|.+. ...+.++|+++++.
T Consensus 30 ~~l~~~~i~~--~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~ 107 (201)
T d2p6ra4 30 EELVEECVAE--NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNG 107 (201)
T ss_dssp HHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHH
T ss_pred HHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhh
Confidence 3444455553 578999999999999888887641 12378899999999
Q ss_pred HHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEE-------cCCCCChhHHHhhhcccCCCCC--cceEEEEecccc
Q 015093 317 SRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------YDLPTQPENYLHRIGRSGRFGR--KGVAINFVTRDD 387 (413)
Q Consensus 317 ~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~-------~~~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~ 387 (413)
+|..+++.|++|.++|||||+++++|+|+|..++||+ .+.|.+..+|+||+||+||.|. .|.+++++.+.+
T Consensus 108 ~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~ 187 (201)
T d2p6ra4 108 QRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187 (201)
T ss_dssp HHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred hHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCC
Confidence 9999999999999999999999999999998888886 4567899999999999999884 688998887776
Q ss_pred HH
Q 015093 388 DR 389 (413)
Q Consensus 388 ~~ 389 (413)
..
T Consensus 188 ~~ 189 (201)
T d2p6ra4 188 RE 189 (201)
T ss_dssp HH
T ss_pred hH
Confidence 54
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=4.7e-20 Score=152.12 Aligned_cols=117 Identities=21% Similarity=0.383 Sum_probs=103.9
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCC
Q 015093 264 EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGI 343 (413)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~ 343 (413)
..++..+.++++...+.++||||++.+.++.+++.|. +..+||+++..+|+++++.|++|+.+|||+|+++++|+
T Consensus 78 ~~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gi 152 (200)
T d2fwra1 78 KNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 152 (200)
T ss_dssp SHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhccc
Confidence 3578889999999888899999999999999998874 45589999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcc---eEEEEecc
Q 015093 344 DVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG---VAINFVTR 385 (413)
Q Consensus 344 d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g---~~~~~~~~ 385 (413)
|+|.+++||++++|+|+..+.|++||++|.|+.+ ..+.|+..
T Consensus 153 dl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 153 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 9999999999999999999999999999997643 34444443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.77 E-value=2.5e-19 Score=139.22 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=90.2
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQR 153 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (413)
+.+|+++++.+|||+|||.+++..++...... +.++++++|++.+++|+.+.+... +..+........
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~--~~~vli~~p~~~l~~q~~~~~~~~----~~~~~~~~~~~~------ 71 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFSAH------ 71 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCCCC------
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhc--CceeeeeecchhHHHHHHHHhhhh----hhhhcccccccc------
Confidence 45688999999999999988876666554333 458999999999999988766443 222222211111
Q ss_pred HHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH-HHHHHHHhhCCCCceEEEEeeeCC
Q 015093 154 ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK-DQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 154 ~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~-~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
......+.+.+...+...... ...+.++++||+||||++...... ..+...+... ++.++++||||||
T Consensus 72 -~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~-~~~~~l~lTATPp 140 (140)
T d1yksa1 72 -GSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARA-NESATILMTATPP 140 (140)
T ss_dssp -CCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHT-TSCEEEEECSSCT
T ss_pred -cccccchhhhhHHHHHHHHhc-cccccceeEEEEccccccChhhHHHHHHHHHHhhC-CCCCEEEEEcCCC
Confidence 012356777888777665433 445677999999999986333221 2223333333 4789999999996
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=6e-19 Score=143.05 Aligned_cols=132 Identities=18% Similarity=0.315 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEcCcccHH--------HHHHHHhhC---CCeeEeecCCCCHHHHHHHHHHHhcCCCeE
Q 015093 266 KLDTLCDLYETL--AITQSVIFVNTRRKVD--------WLTDQMRSR---DHTVSATHGDMDQNSRDIIMREFRSGSSRV 332 (413)
Q Consensus 266 ~~~~l~~~~~~~--~~~~~lIf~~~~~~a~--------~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 332 (413)
+...+.+.++.. .++++-++||.++..+ ..++.|.+. ++.+..+||+|++.+|++++..|++|+.+|
T Consensus 14 ~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~i 93 (206)
T d1gm5a4 14 RVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDI 93 (206)
T ss_dssp THHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSB
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEE
Confidence 444455555443 5567888898775544 334444432 567889999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEcCCCC-ChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHHHHH
Q 015093 333 LITTDLLARGIDVQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADIQRF 397 (413)
Q Consensus 333 li~t~~~~~G~d~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 397 (413)
||||.+++.|+|+|+++++|+.+.+. +.+++.|..||+||.|..|.|++++.+.+....+.+..+
T Consensus 94 LVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~~~ 159 (206)
T d1gm5a4 94 LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFF 159 (206)
T ss_dssp CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHHH
T ss_pred EEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhhhhc
Confidence 99999999999999999999988875 788889999999999999999999988766555555433
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.74 E-value=3.2e-18 Score=131.92 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=85.8
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILS 156 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
.+..++.+|||||||..+...+. ..+.+++|++|++.|++|+.+.+.+..... .....++... .
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~---~~~~~~~~~~-------~ 71 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA------AQGYKVLVLNPSVAATLGFGAYMSKAHGVD---PNIRTGVRTI-------T 71 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH------TTTCCEEEEESCHHHHHHHHHHHHHHHSCC---CEEECSSCEE-------C
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH------HcCCcEEEEcChHHHHHHHHHHHHHHhhcc---cccccccccc-------c
Confidence 45689999999999976543332 124589999999999999999998865432 2233333221 1
Q ss_pred cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCC--CCceEEEEeeeC
Q 015093 157 AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLP--GKIQVGVFSATM 223 (413)
Q Consensus 157 ~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~--~~~~~i~lSAT~ 223 (413)
....+.++|.+.+.... ...+.++++||+||+|++... ....+..+++... ...+++++||||
T Consensus 72 ~~~~~~~~~~~~~~~~~---~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 72 TGSPITYSTYGKFLADG---GCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp CCCSEEEEEHHHHHHTT---GGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred cccceEEEeeeeecccc---chhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 23578889888765432 234567899999999986432 2233445555443 366899999997
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=3.2e-17 Score=131.19 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=101.1
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC--CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR--DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~ 355 (413)
.++++-++||..+..+.+++.+++. +.++..+||.|++.++++++..|.+|+.+|||||.+++.|+|+|+++++|+.+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI~~ 109 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 109 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEEec
Confidence 5679999999999999999999874 67899999999999999999999999999999999999999999999999888
Q ss_pred CC-CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 356 LP-TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 356 ~~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.. +..+++-|.-||+||.+..++|++++.+.
T Consensus 110 a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 110 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp TTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred chhccccccccccceeeecCccceEEEEecCC
Confidence 76 58899999999999999999999999754
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.70 E-value=1.8e-18 Score=144.92 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=93.6
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHH----------HHHHHHHhcCCCeEEEEeCcccc---CCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSR----------DIIMREFRSGSSRVLITTDLLAR---GID 344 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r----------~~~~~~f~~~~~~vli~t~~~~~---G~d 344 (413)
..+++||||++++.++.+++.|++.|+++..+|++++.+.| .++++.|.+|+.+++|+|+.+.+ |+|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD 114 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS 114 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCC
Confidence 46799999999999999999999999999999999998765 45788899999999999999888 678
Q ss_pred CCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecc
Q 015093 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 385 (413)
Q Consensus 345 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 385 (413)
++.+.+|++++.|.|..+|+||+||+|| |++|...++...
T Consensus 115 id~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~ 154 (299)
T d1a1va2 115 LDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 154 (299)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSC
T ss_pred CCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecC
Confidence 8888899999999999999999999999 888877665544
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.69 E-value=1.1e-19 Score=155.09 Aligned_cols=120 Identities=16% Similarity=0.261 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEe----Ccc
Q 015093 264 EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITT----DLL 339 (413)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t----~~~ 339 (413)
+.++..+..+++... +++||||++++.|+.+++.|++. +||+++..+|.++++.|++|+++||||| +.+
T Consensus 11 ~~~~~~l~~~l~~~~-~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~ 83 (248)
T d1gkub2 11 DESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTL 83 (248)
T ss_dssp CCCTTTTHHHHTTSC-SCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCSEEEEECC-----
T ss_pred chHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCeEEEEeccccchh
Confidence 457777888887654 67999999999999999999763 7999999999999999999999999999 678
Q ss_pred ccCCCCCC-CCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEeccccHHHHHHH
Q 015093 340 ARGIDVQQ-VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLADI 394 (413)
Q Consensus 340 ~~G~d~~~-~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 394 (413)
++|+|+|+ +++||++++|+ |.|++||+||.|+.|.+++++...+......+
T Consensus 84 ~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l 135 (248)
T d1gkub2 84 VRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERL 135 (248)
T ss_dssp -CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTT
T ss_pred hhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHH
Confidence 99999996 99999999994 88999999999999999998888776665543
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.60 E-value=9.7e-15 Score=127.64 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=102.8
Q ss_pred CCcHHHHhhhhhhh---------CCCcEEEeCCCCCchhHHHHHHHHHhccccc----CceeEEEEcccHHHHHHHHHHH
Q 015093 62 KPSAIQQRGIVPFC---------KGLDVIQQAQSGTGKTATFCSGILQQLDYES----LQCQALVLAPTRELAQQIEKVM 128 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~---------~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~----~~~~~lvl~P~~~l~~q~~~~~ 128 (413)
.|+|||.+++..+. .+..+|+...+|.|||.+++..+...+.... ...++|||||. .+..||.+++
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~Ei 133 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccc-hhhHHHHHHH
Confidence 68999999997542 3456999999999999887655444433221 22369999997 5789999999
Q ss_pred HHhhcccCceEEEEECCcchHHHHHHH---h-----cCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcH
Q 015093 129 RALGDYMGVKVHACVGGTSVREDQRIL---S-----AGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFK 200 (413)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~ 200 (413)
.++.... ..+...+++.......... . ...+++++|++.+..... .+....+++||+||+|++.+.. .
T Consensus 134 ~k~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~--~l~~~~~~~vI~DEaH~ikn~~-s 209 (298)
T d1z3ix2 134 GKWLGGR-VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-N 209 (298)
T ss_dssp HHHHGGG-CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HhhcCCc-eeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchh--cccccceeeeeccccccccccc-c
Confidence 9987643 3334444444322222111 1 135799999998865433 2333457899999999986544 2
Q ss_pred HHHHHHHhhCCCCceEEEEeeeCCh
Q 015093 201 DQIYDIFQHLPGKIQVGVFSATMPP 225 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~lSAT~~~ 225 (413)
. ..+.+..+. ....+++||||..
T Consensus 210 ~-~~~a~~~l~-~~~rllLTGTPi~ 232 (298)
T d1z3ix2 210 Q-TYLALNSMN-AQRRVLISGTPIQ 232 (298)
T ss_dssp H-HHHHHHHHC-CSEEEEECSSCSG
T ss_pred h-hhhhhhccc-cceeeeecchHHh
Confidence 2 222333333 4567889999964
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.56 E-value=2e-14 Score=126.97 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=107.1
Q ss_pred ccHHHHHHHHHHh---cCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCe---EEEEeC
Q 015093 264 EWKLDTLCDLYET---LAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSR---VLITTD 337 (413)
Q Consensus 264 ~~~~~~l~~~~~~---~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vli~t~ 337 (413)
..|+..+..++.. ..+.|+|||++.....+.+.+.|...|+.+..++|.++..+|..+++.|+++... +|++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 4567777666653 4567999999999999999999999999999999999999999999999987543 667788
Q ss_pred ccccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCcceE--EEEeccccH
Q 015093 338 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA--INFVTRDDD 388 (413)
Q Consensus 338 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 388 (413)
+.+.|+|++.+++||+++++|++..+.|++||+.|.|+...| +.++.....
T Consensus 180 agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~Ti 232 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 232 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred hhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCH
Confidence 999999999999999999999999999999999999986544 445555544
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.55 E-value=7.3e-15 Score=123.44 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=100.1
Q ss_pred CCcHHHHhhhhhhh----CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCc
Q 015093 62 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGV 137 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~----~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~ 137 (413)
+|++||.+++..+. .+..+++..++|.|||..++..+.... ......++||+||. .+..||.+++.++....
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~-~~~~~~~~LIv~p~-~l~~~W~~e~~~~~~~~-- 87 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KENELTPSLVICPL-SVLKNWEEELSKFAPHL-- 87 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-HTTCCSSEEEEECS-TTHHHHHHHHHHHCTTS--
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhh-hcccccccceecch-hhhhHHHHHHHhhcccc--
Confidence 68999999997653 345699999999999999865554443 33334589999995 67888999999886533
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEE
Q 015093 138 KVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVG 217 (413)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i 217 (413)
.+.......... ...+.+|+++|++.+.....- ....+++||+||+|.+.+... ...+....+. ....+
T Consensus 88 ~~~~~~~~~~~~-----~~~~~~vvi~~~~~~~~~~~l---~~~~~~~vI~DEah~~k~~~s--~~~~~~~~l~-a~~r~ 156 (230)
T d1z63a1 88 RFAVFHEDRSKI-----KLEDYDIILTTYAVLLRDTRL---KEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-SKYRI 156 (230)
T ss_dssp CEEECSSSTTSC-----CGGGSSEEEEEHHHHTTCHHH---HTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-EEEEE
T ss_pred cceeeccccchh-----hccCcCEEEeeHHHHHhHHHH---hcccceEEEEEhhhcccccch--hhhhhhhhhc-cceEE
Confidence 333332221111 123468999999988543221 122368999999999865442 2223344443 45578
Q ss_pred EEeeeCChh
Q 015093 218 VFSATMPPE 226 (413)
Q Consensus 218 ~lSAT~~~~ 226 (413)
++||||..+
T Consensus 157 ~LTgTPi~n 165 (230)
T d1z63a1 157 ALTGTPIEN 165 (230)
T ss_dssp EECSSCSTT
T ss_pred EEecchHHh
Confidence 999999753
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.50 E-value=5.5e-14 Score=118.94 Aligned_cols=125 Identities=15% Similarity=0.205 Sum_probs=92.8
Q ss_pred ccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhC-CCeeEeecCCCCHHHHHHHHHHHhcCC-CeEEEE-eCc
Q 015093 264 EWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSR-DHTVSATHGDMDQNSRDIIMREFRSGS-SRVLIT-TDL 338 (413)
Q Consensus 264 ~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vli~-t~~ 338 (413)
..|+..+.+++... .+.++||||+.....+.+...+... +..+..++|+++..+|.++++.|.++. ..++++ +.+
T Consensus 68 S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~ 147 (244)
T d1z5za1 68 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 147 (244)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred hhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccccc
Confidence 45788888887653 5679999999999999998888654 788889999999999999999998764 566655 579
Q ss_pred cccCCCCCCCCEEEEcCCCCChhHHHhhhcccCCCCCc--ceEEEEeccccH
Q 015093 339 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDD 388 (413)
Q Consensus 339 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~ 388 (413)
.++|+|++.+++||+++++|++..+.|++||+.|.|+. -.++.++.....
T Consensus 148 ~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Ti 199 (244)
T d1z5za1 148 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 199 (244)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred cccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCCCH
Confidence 99999999999999999999999999999999999864 445555666543
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.46 E-value=9.9e-14 Score=118.78 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=81.1
Q ss_pred CCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCCCCCCCEEEEcCC--
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-- 356 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d~~~~~~vi~~~~-- 356 (413)
.++++|||++..+++.+++.|++.|.++..+||.+...++++ +++++.++||||++++.|+|+ ++.+||+.+.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~~ 110 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKKPDFILATDIAEMGANL-CVERVLDCRTAF 110 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh----hhcCCcCEEEEechhhhceec-CceEEEecCcee
Confidence 579999999999999999999999999999999998777654 678999999999999999999 5999987653
Q ss_pred -----------------CCChhHHHhhhcccCCCCCcceEEEEec
Q 015093 357 -----------------PTQPENYLHRIGRSGRFGRKGVAINFVT 384 (413)
Q Consensus 357 -----------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 384 (413)
|.|..+..||.||+||.+....++.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 111 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 2577888999999999865444555554
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.43 E-value=1.8e-12 Score=99.83 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=98.6
Q ss_pred CccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcC-CCeEEEEeC
Q 015093 261 DKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSG-SSRVLITTD 337 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~ 337 (413)
.....++.++...++.. .+.|+||++.|++.++.+++.|++.++++.+++......+.+ ++. ..| ...|.|+|+
T Consensus 14 ~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~-II~--~Ag~~g~VtIATN 90 (175)
T d1tf5a4 14 RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQ-IIE--EAGQKGAVTIATN 90 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHH-HHT--TTTSTTCEEEEET
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHH-HHH--hccCCCceeehhh
Confidence 34455666666655433 567999999999999999999999999999999886543333 332 233 346999999
Q ss_pred ccccCCCCC--------CCCEEEEcCCCCChhHHHhhhcccCCCCCcceEEEEecccc
Q 015093 338 LLARGIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 387 (413)
Q Consensus 338 ~~~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 387 (413)
++++|.|+. +--+||....+.|.....|..||+||.|.+|...+|++-.|
T Consensus 91 mAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 91 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 999999985 34468888899999999999999999999999999997655
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.26 E-value=8.2e-11 Score=96.50 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=124.3
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEE
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHA 141 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~ 141 (413)
.|++.|.-+--.+..|+ +..+.||-|||+++.+|+.-....+ ..+-|++.+.-|+..-.+++..+...+|+++++
T Consensus 80 RhyDVQLiGgi~L~~G~--iaem~TGEGKTL~a~l~a~l~al~g---~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg~ 154 (273)
T d1tf5a3 80 FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTG---KGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGL 154 (273)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEehhHHHHHHHHHhhh--heeecCCCcchhHHHHHHHHHHhcC---CCceEEecCccccchhhhHHhHHHHHcCCCccc
Confidence 78899988888887776 9999999999999887776544443 378999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHH-HHHHcC------CCCCCCccEEEEccchhhh-ccCcH-------------
Q 015093 142 CVGGTSVREDQRILSAGVHVVVGTPGRVF-DMLRRQ------SLRPDYIRMFVLDEADEML-SRGFK------------- 200 (413)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~~~------------- 200 (413)
...+.......... .++|+++|...|. +.++.. ......+.+.|+||+|.++ +....
T Consensus 155 ~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartpliisg~~~~~a~ 232 (273)
T d1tf5a3 155 NLNSMSKDEKREAY--AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQSMTLAT 232 (273)
T ss_dssp CCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEEEEEE
T ss_pred cccccCHHHHHHHh--hCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCceEeccCccchhh
Confidence 98877765554444 4799999999884 444432 1224557899999999865 22110
Q ss_pred HHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHhcCCC
Q 015093 201 DQIYDIFQHLPGKIQVGVFSATMPPEALEITRKFMNKP 238 (413)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~ 238 (413)
-.++..++..+ ++.+||+|......++...|..+.
T Consensus 233 it~q~~f~~y~---~l~gmtgta~~~~~e~~~iy~l~v 267 (273)
T d1tf5a3 233 ITFQNYFRMYE---KLAGMTGTAKTEEEEFRNIYNMQV 267 (273)
T ss_dssp EEHHHHHTTSS---EEEEEESCCGGGHHHHHHHHCCCE
T ss_pred hhHHHHHHHHH---HHhCCccccHHHHHHHHhccCCce
Confidence 12445666664 689999999877766666655443
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.98 E-value=4.8e-09 Score=81.97 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=99.0
Q ss_pred CccccHHHHHHHHHHhc--CCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCC-CeEEEEeC
Q 015093 261 DKEEWKLDTLCDLYETL--AITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGS-SRVLITTD 337 (413)
Q Consensus 261 ~~~~~~~~~l~~~~~~~--~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vli~t~ 337 (413)
.....|+.++...++.. .+.|+||.+.|++..+.+.+.|++.++++.++++.....|-+ ++. +.|. ..|-|+|+
T Consensus 14 ~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAe-IIA--qAG~~GaVTIATN 90 (219)
T d1nkta4 14 KTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEAT-IIA--VAGRRGGVTVATN 90 (219)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHH-HHH--TTTSTTCEEEEET
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHHHH-HHH--hcccCCcEEeecc
Confidence 44456777776665543 667999999999999999999999999999999986533332 333 3444 45889999
Q ss_pred ccccCCCCCC----------------------------------------------------CCEEEEcCCCCChhHHHh
Q 015093 338 LLARGIDVQQ----------------------------------------------------VSLVINYDLPTQPENYLH 365 (413)
Q Consensus 338 ~~~~G~d~~~----------------------------------------------------~~~vi~~~~~~s~~~~~Q 365 (413)
|+++|.|+.= =-+||-.....|...=.|
T Consensus 91 MAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQ 170 (219)
T d1nkta4 91 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 170 (219)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred ccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccc
Confidence 9999999831 225677777788888899
Q ss_pred hhcccCCCCCcceEEEEeccccHH
Q 015093 366 RIGRSGRFGRKGVAINFVTRDDDR 389 (413)
Q Consensus 366 ~~GR~~R~g~~g~~~~~~~~~~~~ 389 (413)
.-||+||.|.+|.+.+|++-.|.-
T Consensus 171 LRGRsGRQGDPGsSrFflSLeDdL 194 (219)
T d1nkta4 171 LRGRSGRQGDPGESRFYLSLGDEL 194 (219)
T ss_dssp HHHTSSGGGCCEEEEEEEETTSHH
T ss_pred ccccccccCCCccceeEEeccHHH
Confidence 999999999999999999987754
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=3.9e-07 Score=80.04 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=83.0
Q ss_pred CCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHH--HHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCce
Q 015093 61 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI--LQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVK 138 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i--~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~ 138 (413)
..+.+.|..|+..++.++-++|.||+|||||.+....+ +.... ...+.++++++||-.-+....+............
T Consensus 147 ~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~-~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~ 225 (359)
T d1w36d1 147 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-DGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 225 (359)
T ss_dssp TTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC-SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred cccccHHHHHHHHHHcCCeEEEEcCCCCCceehHHHHHHHHHHHH-hccCCeEEEecCcHHHHHHHHHHHHHHHhhcCch
Confidence 35678899999999998889999999999998753322 22222 2335589999999887777666554432211110
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHH------HHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCC
Q 015093 139 VHACVGGTSVREDQRILSAGVHVVVGTPGRVF------DMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPG 212 (413)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~------~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 212 (413)
..... ....-..|.+.+. ..+.........++++|+||+-.+ -...+..++..+++
T Consensus 226 ~~~~~--------------~~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv----~~~l~~~ll~~~~~ 287 (359)
T d1w36d1 226 DEQKK--------------RIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI----DLPMMSRLIDALPD 287 (359)
T ss_dssp SCCCC--------------SCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGC----BHHHHHHHHHTCCT
T ss_pred hhhhh--------------hhhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhcc----CHHHHHHHHHHhcC
Confidence 00000 0000011111111 111222233345789999999975 34556678888888
Q ss_pred CceEEEEe
Q 015093 213 KIQVGVFS 220 (413)
Q Consensus 213 ~~~~i~lS 220 (413)
..++|++.
T Consensus 288 ~~~lILvG 295 (359)
T d1w36d1 288 HARVIFLG 295 (359)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEC
Confidence 88877554
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=98.04 E-value=4.4e-06 Score=71.99 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=52.2
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhcccc-cCceeEEEEcccHHHHHHHHHHHHHhh
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-SLQCQALVLAPTRELAQQIEKVMRALG 132 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~-~~~~~~lvl~P~~~l~~q~~~~~~~~~ 132 (413)
+|+|-|.+++.. ....++|.|++|||||.+.+.-+...+... ....+++++++|++++....+.+.+..
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 478899999975 346699999999999988765554444332 223489999999999998877776654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=9.4e-06 Score=65.36 Aligned_cols=139 Identities=11% Similarity=0.025 Sum_probs=69.6
Q ss_pred CcHHHHhhhhhhhC----CC---cEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhccc
Q 015093 63 PSAIQQRGIVPFCK----GL---DVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYM 135 (413)
Q Consensus 63 ~~~~Q~~~~~~~~~----~~---~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~ 135 (413)
+||||..+++.+.+ ++ ..++.||+|+|||..+...+-..+..........-.+++ + ..+.. ..
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~---~----~~i~~---~~ 72 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG---C----QLMQA---GT 72 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHH---H----HHHHH---TC
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccch---h----hhhhh---cc
Confidence 56888887776533 32 389999999999988755554443332222121111221 1 11111 11
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCce
Q 015093 136 GVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQ 215 (413)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (413)
...+........ ...+-+-....+...+.... .....+++|+||+|.+... ....+.+++...+.+..
T Consensus 73 ~~~~~~~~~~~~----------~~~i~~~~ir~l~~~~~~~~-~~~~~kviIide~d~l~~~-a~n~Llk~lEep~~~~~ 140 (207)
T d1a5ta2 73 HPDYYTLAPEKG----------KNTLGVDAVREVTEKLNEHA-RLGGAKVVWVTDAALLTDA-AANALLKTLEEPPAETW 140 (207)
T ss_dssp CTTEEEECCCTT----------CSSBCHHHHHHHHHHTTSCC-TTSSCEEEEESCGGGBCHH-HHHHHHHHHTSCCTTEE
T ss_pred ccccchhhhhhc----------ccccccchhhHHhhhhhhcc-ccCccceEEechhhhhhhh-hhHHHHHHHHhhcccce
Confidence 222222221110 01111111112222222222 2334689999999987433 46677788888777776
Q ss_pred EEEEeeeC
Q 015093 216 VGVFSATM 223 (413)
Q Consensus 216 ~i~lSAT~ 223 (413)
+++.|-.+
T Consensus 141 fIl~t~~~ 148 (207)
T d1a5ta2 141 FFLATREP 148 (207)
T ss_dssp EEEEESCG
T ss_pred eeeeecCh
Confidence 66655444
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.80 E-value=2.1e-05 Score=68.02 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccccc-CceeEEEEcccHHHHHHHHHHHHHh
Q 015093 62 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYES-LQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.|++-|.+++++. +..++|.|++|||||.+.+.-+...+.... ...+++++++++..+......+...
T Consensus 11 ~L~~eQ~~~v~~~--~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~~~ 79 (318)
T d1pjra1 11 HLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (318)
T ss_dssp TSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC--CCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHHhh
Confidence 4788999999863 556999999999999988766655554332 2248999999999999888877664
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.50 E-value=0.00016 Score=57.32 Aligned_cols=113 Identities=8% Similarity=0.084 Sum_probs=66.1
Q ss_pred HHhhhhhhhCC---CcEEEeCCCCCchhHHHHHHHHHhccc-ccCceeEEEEcccHH-H-HHHHHHHHHHhhcccCceEE
Q 015093 67 QQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDY-ESLQCQALVLAPTRE-L-AQQIEKVMRALGDYMGVKVH 140 (413)
Q Consensus 67 Q~~~~~~~~~~---~~~lv~~~tGsGKT~~~~~~i~~~l~~-~~~~~~~lvl~P~~~-l-~~q~~~~~~~~~~~~~~~~~ 140 (413)
|.+.+..+.+. .++++.||.|+|||..+...+- .+.. ....+-++++.|... . .+|..
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~-~i~~~~~~h~D~~~i~~~~~~I~Id~IR--------------- 65 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPE-YVEKFPPKASDVLEIDPEGENIGIDDIR--------------- 65 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH-HHHTSCCCTTTEEEECCSSSCBCHHHHH---------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHH-HHhccccCCCCEEEEeCCcCCCCHHHHH---------------
Confidence 55555555443 4599999999999988754432 2211 111223666666311 0 11111
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 141 ACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
.+.+.+...+. ....+++|+||||.+. .....++.+++..-|++..++++|
T Consensus 66 ---------------------------~i~~~~~~~~~-~~~~KviIId~ad~l~-~~aqNaLLK~LEEPp~~t~fiLit 116 (198)
T d2gnoa2 66 ---------------------------TIKDFLNYSPE-LYTRKYVIVHDCERMT-QQAANAFLKALEEPPEYAVIVLNT 116 (198)
T ss_dssp ---------------------------HHHHHHTSCCS-SSSSEEEEETTGGGBC-HHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred ---------------------------HHHHHHhhCcc-cCCCEEEEEeCccccc-hhhhhHHHHHHhCCCCCceeeecc
Confidence 12222222222 2346899999999874 335677888888888888777776
Q ss_pred eeCC
Q 015093 221 ATMP 224 (413)
Q Consensus 221 AT~~ 224 (413)
..+.
T Consensus 117 ~~~~ 120 (198)
T d2gnoa2 117 RRWH 120 (198)
T ss_dssp SCGG
T ss_pred CChh
Confidence 6654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.32 E-value=0.00022 Score=56.66 Aligned_cols=132 Identities=22% Similarity=0.244 Sum_probs=68.1
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
+++++|||+|||.+..-.+.. +.. + +.++.+++.-.... ...++++.+++..++.+...............
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~-~~~-~-g~kV~lit~Dt~R~-gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~----- 83 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALY-YKG-K-GRRPLLVAADTQRP-AAREQLRLLGEKVGVPVLEVMDGESPESIRRR----- 83 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHH-HHH-T-TCCEEEEECCSSCH-HHHHHHHHHHHHHTCCEEECCTTCCHHHHHHH-----
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH-C-CCcEEEEecccccc-hHHHHHHHHHHhcCCccccccccchhhHHHHH-----
Confidence 677999999999887555443 322 2 23555555422221 12344555555556655444333221111000
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHHHh
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSATMPPEALEITRKF 234 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~~~ 234 (413)
...... ..+.++|++|=+-+.... .....+.++.+...+...++.++|+...+.......+
T Consensus 84 ---------~~~~~~-----~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f 145 (207)
T d1ls1a2 84 ---------VEEKAR-----LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 145 (207)
T ss_dssp ---------HHHHHH-----HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH
T ss_pred ---------HHHHHh-----hccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHH
Confidence 000001 122578888877764322 2334555555556656667788888776655555443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00076 Score=53.38 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=64.8
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
++++||||+|||.+..-.+. .+.. . +.++.+++.-.-.+. ..++++.++...++.+.....+......
T Consensus 12 i~lvGptGvGKTTTiAKLA~-~~~~-~-g~kV~lit~Dt~R~g-A~eQL~~~a~~l~v~~~~~~~~~d~~~~-------- 79 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLAR-QFEQ-Q-GKSVMLAAGDTFRAA-AVEQLQVWGQRNNIPVIAQHTGADSASV-------- 79 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHH-HHHT-T-TCCEEEECCCTTCHH-HHHHHHHHHHHTTCCEECCSTTCCHHHH--------
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH-C-CCcEEEEeccccccc-chhhhhhhhhhcCCcccccccCCCHHHH--------
Confidence 66799999999988765543 3332 2 235555544332221 3455666666666665443333221111
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhcc-CcHHHHHHHHhhCC------CCceEEEEeeeCChhHHHHHH
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSR-GFKDQIYDIFQHLP------GKIQVGVFSATMPPEALEITR 232 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~------~~~~~i~lSAT~~~~~~~~~~ 232 (413)
+.+.... ....++++|++|=+-+.... .....+.++.+... +...++.++|+...+......
T Consensus 80 ---------l~~~~~~--a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~ 148 (211)
T d2qy9a2 80 ---------IFDAIQA--AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAK 148 (211)
T ss_dssp ---------HHHHHHH--HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHH
T ss_pred ---------HHHHHHH--HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHh
Confidence 1111110 00123578999987654322 12233333333221 234577788888765444333
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.0027 Score=51.74 Aligned_cols=38 Identities=11% Similarity=0.292 Sum_probs=26.0
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
...++|+||+|.+. ......+.+.+...+....+++.|
T Consensus 115 ~~kviiIde~d~l~-~~~q~~Llk~lE~~~~~~~~il~t 152 (239)
T d1njfa_ 115 RFKVYLIDEVHMLS-RHSFNALLKTLEEPPEHVKFLLAT 152 (239)
T ss_dssp SSEEEEEETGGGSC-HHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CCEEEEEECcccCC-HHHHHHHHHHHhcCCCCeEEEEEc
Confidence 35799999999873 334556677777666666665544
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.0019 Score=53.07 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=68.7
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+.++++.+|+.--|.+.++.+++ .+..+..+||+++..+|.++.....+|+.+|+|+|- .+...+.+.++..||
T Consensus 131 ~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~Lglvi 210 (264)
T d1gm5a3 131 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 210 (264)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccceee
Confidence 456899999998887776655554 578999999999999999999999999999999996 566678888888888
Q ss_pred EcCCCCChhHHHhhhcc
Q 015093 353 NYDLPTQPENYLHRIGR 369 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~GR 369 (413)
+-..- .-.+.||.+-
T Consensus 211 iDEqH--~fgv~Qr~~l 225 (264)
T d1gm5a3 211 IDEQH--RFGVKQREAL 225 (264)
T ss_dssp EESCC--CC-----CCC
T ss_pred ecccc--ccchhhHHHH
Confidence 76543 2346676543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.00084 Score=54.28 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 181 DYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 181 ~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
....++|+||+|.+... ....+...+...+....+++.+....
T Consensus 100 ~~~kviiiDe~d~~~~~-~~~~ll~~~e~~~~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 100 GKHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACNQSN 142 (224)
T ss_dssp TCCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred cceEEEEEecccccchh-HHHHHhhhccccccceeeeeccCchh
Confidence 34579999999987543 34555566677776666666655543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.89 E-value=0.0028 Score=50.54 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=26.4
Q ss_pred ccEEEEccchhhhcc-CcHHHHHHHHhhCCC-CceEEEEeeeCCh
Q 015093 183 IRMFVLDEADEMLSR-GFKDQIYDIFQHLPG-KIQVGVFSATMPP 225 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~-~~~~i~lSAT~~~ 225 (413)
.+++++|++|.+... .+...+..++..+.. +.+++ +|+..++
T Consensus 98 ~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~ii-its~~~p 141 (213)
T d1l8qa2 98 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQII-LASDRHP 141 (213)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEE-EEESSCG
T ss_pred ccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEE-EecCCcc
Confidence 689999999988643 344556666665543 44455 5555443
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.74 E-value=0.0045 Score=48.84 Aligned_cols=130 Identities=17% Similarity=0.160 Sum_probs=60.3
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
++++||||+|||.+..-.+. .+.. ......+|.+.+.-.. -.++++.++..+++.+.............
T Consensus 15 i~lvGptGvGKTTTiAKLA~-~~~~-~g~kV~lit~Dt~R~g--a~eQL~~~a~~l~v~~~~~~~~~~~~~~~------- 83 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAY-FYKK-KGFKVGLVGADVYRPA--ALEQLQQLGQQIGVPVYGEPGEKDVVGIA------- 83 (211)
T ss_dssp EEEECSCCC----HHHHHHH-HHHH-TTCCEEEEECCCSSHH--HHHHHHHHHHHHTCCEECCTTCCCHHHHH-------
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH-CCCceEEEEeeccccc--hhHHHHHhccccCcceeecccchhhhHHH-------
Confidence 66799999999988755543 3332 2232445555432221 13445555555565544332222111100
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC---cHHHHHHHHhhCCCCceEEEEeeeCChhHHHHHH
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG---FKDQIYDIFQHLPGKIQVGVFSATMPPEALEITR 232 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~---~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~~~~ 232 (413)
.+.+.. ....+.++|++|=+-+..... ....+.++.....+...++.++|+...+......
T Consensus 84 ----------~~a~~~--~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~ 147 (211)
T d1j8yf2 84 ----------KRGVEK--FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLAS 147 (211)
T ss_dssp ----------HHHHHH--HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH
T ss_pred ----------HHHHHH--hhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHh
Confidence 000000 001225788888775432221 1234555555555555677889888655444433
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.0013 Score=54.15 Aligned_cols=41 Identities=10% Similarity=0.246 Sum_probs=28.2
Q ss_pred CccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeC
Q 015093 182 YIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATM 223 (413)
Q Consensus 182 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~ 223 (413)
...++|+||+|.+... ....+.+++...+.++.+++.+-.+
T Consensus 131 ~~~iiiide~d~l~~~-~~~~l~~~~e~~~~~~~~Il~tn~~ 171 (252)
T d1sxje2 131 RYKCVIINEANSLTKD-AQAALRRTMEKYSKNIRLIMVCDSM 171 (252)
T ss_dssp CCEEEEEECTTSSCHH-HHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CceEEEeccccccccc-cchhhhcccccccccccceeeeccc
Confidence 3579999999987433 4556777788877777666544333
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.69 E-value=0.0032 Score=49.62 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=17.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGIL 99 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~ 99 (413)
++-++++||||+|||.+..-.+.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34478899999999988765543
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0078 Score=48.22 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=71.4
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeC-ccccCCCCCCCCEEE
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 352 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-~~~~G~d~~~~~~vi 352 (413)
.+..+++.+|+.-.+.+.++.+++ .+.++..+|+..+..+|.++...+.+|+.+|+|.|- .+...+.++++..||
T Consensus 103 ~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~~~~f~~LgLiI 182 (233)
T d2eyqa3 103 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 182 (233)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred cCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhccCCcccccccee
Confidence 556899999999999998888875 467889999999999999999999999999999997 555578888888887
Q ss_pred EcCCCCChhHHHhhh
Q 015093 353 NYDLPTQPENYLHRI 367 (413)
Q Consensus 353 ~~~~~~s~~~~~Q~~ 367 (413)
....- -..|.|+.
T Consensus 183 iDEeH--~fg~kQ~~ 195 (233)
T d2eyqa3 183 VDEEH--RFGVRHKE 195 (233)
T ss_dssp EESGG--GSCHHHHH
T ss_pred eechh--hhhhHHHH
Confidence 65542 12344554
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.0033 Score=50.68 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=27.1
Q ss_pred CCCCccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEe
Q 015093 179 RPDYIRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFS 220 (413)
Q Consensus 179 ~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lS 220 (413)
......++|+||+|.+... ....+.+++...+....+++.+
T Consensus 96 ~~~~~kiiiiDe~d~~~~~-~~~~Ll~~le~~~~~~~~~~~~ 136 (227)
T d1sxjc2 96 FSKGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 136 (227)
T ss_dssp SSCSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCCCeEEEEEeccccchhh-HHHHHHHHhhhcccceeecccc
Confidence 3344579999999987433 4566677777776665555443
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=96.64 E-value=0.0014 Score=57.69 Aligned_cols=66 Identities=26% Similarity=0.364 Sum_probs=48.4
Q ss_pred CCcHHHHhhhhhhhC----C-CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 62 KPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 62 ~~~~~Q~~~~~~~~~----~-~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
.|.--|=++++.+.+ | +..++.|-||||||++.. .++... +..+|||+|+..+|.|++++++.+..
T Consensus 11 ~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~-----~rp~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 11 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV-----NKPTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH-----TCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh-----CCCEEEEeCCHHHHHHHHHHHHHHcC
Confidence 455566666655544 4 458899999999997652 232221 33799999999999999999999864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.60 E-value=0.013 Score=47.72 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=29.2
Q ss_pred cccCccCCCCCHHHHHHHHhCC--CCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 38 VYDSFDSMGLKENLLRGIYAYG--FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 38 ~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+..+|++++--+...+.+...= +..+..++... ....+.+|+.||+|+|||..+
T Consensus 4 p~~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g---~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 4 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG---ARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEecCCCCChhHHH
Confidence 3356777765555555554310 00111122111 112356999999999999776
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=96.45 E-value=0.011 Score=43.08 Aligned_cols=87 Identities=18% Similarity=0.194 Sum_probs=52.2
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
-++.||+.||||.-.+..+... . ..+.+++++.|...-. ... .+ ..+.+.. ..
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~-~--~~~~kv~~ikp~~D~R---------~~~----~i-~s~~g~~----------~~ 57 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRL-E--YADVKYLVFKPKIDTR---------SIR----NI-QSRTGTS----------LP 57 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH-H--HTTCCEEEEEECCCGG---------GCS----SC-CCCCCCS----------SC
T ss_pred EEEEccccCHHHHHHHHHHHHH-H--HCCCcEEEEEEccccc---------ccc----eE-EcccCce----------ee
Confidence 4789999999997654443322 2 2244899999986521 111 11 1111111 13
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhh
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEM 194 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 194 (413)
.+.+.+...+...+..... ...+++|.+||+|.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~-~~~~dvI~IDE~QFf 91 (139)
T d2b8ta1 58 SVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 91 (139)
T ss_dssp CEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred eEEeccchhhHHHHHhhcc-ccCcCEEEechhhhc
Confidence 4666666666666655443 345789999999976
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.44 E-value=0.01 Score=46.82 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=33.4
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEE
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHAC 142 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 142 (413)
++++||||+|||.+..-.+. .+...+ ....++-+.+.-.. ..++++.++..+++.+...
T Consensus 14 i~lvGptGvGKTTTiAKLAa-~~~~~~-~kV~lit~Dt~R~g--A~eQL~~~a~~l~i~~~~~ 72 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAK-MFVDEG-KSVVLAAADTFRAA--AIEQLKIWGERVGATVISH 72 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHH-HHHHTT-CCEEEEEECTTCHH--HHHHHHHHHHHHTCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHHCC-CceEEEeecccccc--hhHHHHHHhhhcCcccccc
Confidence 67799999999988655443 333322 33455555543222 2344555555556655443
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.40 E-value=0.0059 Score=49.26 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=28.2
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
.+|+++-..+...+.+... +.. -+..++++.||+|+|||..+-
T Consensus 21 ~~~~diig~~~~~~~l~~~------------i~~-~~~~~lll~Gp~G~GKTtla~ 63 (231)
T d1iqpa2 21 QRLDDIVGQEHIVKRLKHY------------VKT-GSMPHLLFAGPPGVGKTTAAL 63 (231)
T ss_dssp CSTTTCCSCHHHHHHHHHH------------HHH-TCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHccCcHHHHHHHHHH------------HHc-CCCCeEEEECCCCCcHHHHHH
Confidence 3577776677776666532 110 012458999999999997763
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.0098 Score=48.01 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=25.9
Q ss_pred ccEEEEccchhhhccCcHHHHHHHHhhCCCCceEEEEeeeCC
Q 015093 183 IRMFVLDEADEMLSRGFKDQIYDIFQHLPGKIQVGVFSATMP 224 (413)
Q Consensus 183 ~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~lSAT~~ 224 (413)
..++|+||+|.+... ....+..++...+....++..+....
T Consensus 109 ~~viiiDe~d~l~~~-~~~~l~~~~~~~~~~~~~i~~~~~~~ 149 (237)
T d1sxjd2 109 YKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNYVT 149 (237)
T ss_dssp CEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ceEEEEecccccCHH-HHHHHhhccccccccccccccccccc
Confidence 568999999987543 34455566666665665554444443
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.18 E-value=0.0056 Score=44.85 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=24.9
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
-++.||+.||||.-.+..+.. .. ..+.+++++.|...
T Consensus 10 ~lI~GpMfSGKTteLi~~~~~-~~--~~g~~vl~i~~~~D 46 (141)
T d1xx6a1 10 EVIVGPMYSGKSEELIRRIRR-AK--IAKQKIQVFKPEID 46 (141)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-HH--HTTCCEEEEEEC--
T ss_pred EEEEeccccHHHHHHHHHHHH-hh--hcCCcEEEEEeccc
Confidence 688999999999765444432 22 22448999999865
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0066 Score=44.03 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=25.4
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHH
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRE 119 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~ 119 (413)
-++.||+.||||.-.+..+... .. .+.+++++.|...
T Consensus 5 ~li~GpMfsGKTt~Li~~~~~~-~~--~g~~v~~ikp~~D 41 (133)
T d1xbta1 5 QVILGPMFSGKSTELMRRVRRF-QI--AQYKCLVIKYAKD 41 (133)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-HT--TTCCEEEEEETTC
T ss_pred EEEEecccCHHHHHHHHHHHHH-HH--cCCcEEEEecccc
Confidence 5889999999997654433322 22 2447999998765
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.82 E-value=0.015 Score=47.58 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.4
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+|+.||+|+|||..+
T Consensus 38 ~~giLL~GppGtGKT~l~ 55 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIA 55 (258)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CceeEEecCCCCCchHHH
Confidence 466999999999999764
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.01 Score=46.29 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=71.8
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++.||||...-.....+.+++... +.++..++|........... ....+|+|+|. +-+.+.+..+.
T Consensus 31 GgQvy~V~p~I~~~e~~~~~l~~~~p--~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt------vIEvGiDvpnA 102 (211)
T d2eyqa5 31 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPTA 102 (211)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCTTE
T ss_pred CCeEEEEEcCccchhhHHHHHHHhCC--ceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh------hhhhccCCCCC
Confidence 45999999999888888888888765 66899999988766554443 45789999993 33456778888
Q ss_pred cEEEEccchhhhccCcHHHHHHHHhhCCC---CceEEEEe
Q 015093 184 RMFVLDEADEMLSRGFKDQIYDIFQHLPG---KIQVGVFS 220 (413)
Q Consensus 184 ~~iIiDE~h~~~~~~~~~~~~~~~~~~~~---~~~~i~lS 220 (413)
.++|+..|+++ -..++.-+.-+... ....++++
T Consensus 103 ~~iiI~~a~rf----GLaQLhQLRGRVGR~~~~s~c~l~~ 138 (211)
T d2eyqa5 103 NTIIIERADHF----GLAQLHQLRGRVGRSHHQAYAWLLT 138 (211)
T ss_dssp EEEEETTTTSS----CHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred cEEEEecchhc----cccccccccceeeecCccceEEEEe
Confidence 99999999986 23344444444322 23455555
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.075 Score=43.13 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=29.6
Q ss_pred ccccCccCCCCCHHHHHHHHhC--CCCCCcHHHHhhhhhhhCCCcEEEeCCCCCchhHHH
Q 015093 37 EVYDSFDSMGLKENLLRGIYAY--GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~~~~~~~~~~~lv~~~tGsGKT~~~ 94 (413)
++..+|++.+-.+...+.+.+. .+..+..+|... +...+.+++.||+|+|||..+
T Consensus 6 ~~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la 62 (256)
T d1lv7a_ 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (256)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHH
Confidence 3445667766666665555431 011111122111 122466999999999999875
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.12 E-value=0.013 Score=49.76 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=34.5
Q ss_pred HHHHhhhhhh-hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHH
Q 015093 65 AIQQRGIVPF-CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTREL 120 (413)
Q Consensus 65 ~~Q~~~~~~~-~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l 120 (413)
+-+...+..+ ..+++++|+|+||||||... .+++..+.. ..+++.+-.+.++
T Consensus 153 ~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i~~---~~rivtiEd~~El 205 (323)
T d1g6oa_ 153 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIPK---EERIISIEDTEEI 205 (323)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGSCT---TCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeeccccchHHH-HHHhhhccc---ccceeeccchhhh
Confidence 4444455443 44788999999999999763 455444432 3478888777665
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=94.96 E-value=0.022 Score=49.88 Aligned_cols=67 Identities=34% Similarity=0.452 Sum_probs=48.3
Q ss_pred CCCcHHHHhhhhhhh----CCCc-EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 61 EKPSAIQQRGIVPFC----KGLD-VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 61 ~~~~~~Q~~~~~~~~----~~~~-~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
+.|+.-|-+++..+. .|.. ..+.|.+||+|+++.. .+.... +..+|||||+...+.++++.++.+..
T Consensus 7 ~~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A-~l~~~~-----~rp~LvVt~~~~~A~~l~~dL~~~l~ 78 (408)
T d1c4oa1 7 PSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA-KVIEAL-----GRPALVLAPNKILAAQLAAEFRELFP 78 (408)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHH-----TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH-HHHHHh-----CCCEEEEeCCHHHHHHHHHHHHHhcC
Confidence 356666766666543 4544 7889999999996542 222221 23799999999999999999999864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.94 E-value=0.015 Score=50.98 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=24.7
Q ss_pred HHHHhhhhhhhCCC--cEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 65 AIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 65 ~~Q~~~~~~~~~~~--~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
+.|...+..+.... -+|+.||||||||.+. ..+++.+.
T Consensus 144 ~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~~ 183 (401)
T d1p9ra_ 144 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELN 183 (401)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHC
T ss_pred HHHHHHHHHHHhhhhceEEEEcCCCCCccHHH-HHHhhhhc
Confidence 44444454554433 3899999999999774 45555553
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=94.59 E-value=0.016 Score=50.07 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=15.3
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++|..||||.|||..+
T Consensus 69 ~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred cceeeeCCCCccHHHHH
Confidence 56999999999999876
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.015 Score=44.53 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=24.0
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
++++|.||+|+|||... ..+...+...... ..++.++
T Consensus 2 k~v~ItG~~GtGKTtl~-~~i~~~l~~~~~~-v~~~~~~ 38 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLI-HKASEVLKSSGVP-VDGFYTE 38 (189)
T ss_dssp CCEEEESCCSSCHHHHH-HHHHHHHHHTTCC-CEEEECC
T ss_pred cEEEEECCCCCcHHHHH-HHHHHHHHHCCCE-EEEEEec
Confidence 67999999999999754 4555555444322 3344444
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.19 E-value=0.018 Score=48.63 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+++++.||||+|||..+
T Consensus 49 ~~~iLl~GPpG~GKT~lA 66 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIA 66 (309)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 577999999999999876
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.88 E-value=0.038 Score=45.28 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=19.3
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhccc
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDY 104 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~ 104 (413)
.++++.||+|+|||.++ -.+...+..
T Consensus 44 ~~lll~GppGtGKT~l~-~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTL-RKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHTT
T ss_pred CceEEECCCCCCHHHHH-HHHHHHHhc
Confidence 57999999999999765 445555543
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=93.80 E-value=0.9 Score=33.86 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=71.7
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+++.-++...+.+.+. ++++..++|+.........+ .+..+|+|+|. +...+++..++
T Consensus 31 g~r~lvfc~t~~~~~~l~~~L~~~----Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~------v~~~GiDip~V 100 (174)
T d1c4oa2 31 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLDIPEV 100 (174)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCCCTTE
T ss_pred CCcEEEEEcchhHHHHHHHHHHhc----CCceEEEecccchHHHHHHHHHHHCCCeEEEEeee------eeeeeccCCCC
Confidence 558999999999998888877774 88999999998876655443 45789999992 44567888889
Q ss_pred cEEEEccchhhhcc-CcHHHHHHHHhhCCCCceEEEEeee
Q 015093 184 RMFVLDEADEMLSR-GFKDQIYDIFQHLPGKIQVGVFSAT 222 (413)
Q Consensus 184 ~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~lSAT 222 (413)
++||+=.++..... +....+..+-+..+...-.+++-+.
T Consensus 101 ~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~ 140 (174)
T d1c4oa2 101 SLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYAD 140 (174)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECS
T ss_pred cEEEEeccccccccchhHHHHHHhhhhhhcCCCeeEEeec
Confidence 99998777653221 2233445554444443333333333
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.1 Score=40.03 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=61.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhcccc----cCceeEEEEcccHHHH------HHHHHHHHHhhccc---CceEEEEEC
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYE----SLQCQALVLAPTRELA------QQIEKVMRALGDYM---GVKVHACVG 144 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~----~~~~~~lvl~P~~~l~------~q~~~~~~~~~~~~---~~~~~~~~~ 144 (413)
++++++||+|.|||...--.+. .+..+ ....+-+|-.....|. .+|.+.++.+.... ..++.++.+
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~-ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfID 122 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQ-RIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 122 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-HHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCeEEEecCCcccHHHHHHHHH-HHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 5699999999999976533332 23221 1112345555555554 36666666554332 223333332
Q ss_pred Cc-------------chHHHH-HHHh-cCCc-EEEeChHHHHHHHHcCCCCCCCccEEEEccch
Q 015093 145 GT-------------SVREDQ-RILS-AGVH-VVVGTPGRVFDMLRRQSLRPDYIRMFVLDEAD 192 (413)
Q Consensus 145 ~~-------------~~~~~~-~~~~-~~~~-Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h 192 (413)
+. +..... ..+. .... |--+||+.+...++......+.+..|-++|-.
T Consensus 123 eih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~ 186 (195)
T d1jbka_ 123 ELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp TGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred hHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCC
Confidence 11 111111 1111 2233 44578888888877766556667888888865
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=0.079 Score=47.38 Aligned_cols=55 Identities=24% Similarity=0.172 Sum_probs=40.1
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhccccc---------CceeEEEEcccHHHHHHHHHHHHHh
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYES---------LQCQALVLAPTRELAQQIEKVMRAL 131 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---------~~~~~lvl~P~~~l~~q~~~~~~~~ 131 (413)
.+..||.|+.|||||.+...-++..+.... .-..+|+|+=|+.-+.++.+++...
T Consensus 16 ~g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~ 79 (485)
T d1w36b1 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (485)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHHH
Confidence 456999999999999887766666654321 1135889988888888887777554
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=92.73 E-value=1.4 Score=33.02 Aligned_cols=104 Identities=20% Similarity=0.202 Sum_probs=72.1
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.+++|.|+++.-++.....++.. +.++..++|+.+.......+ .+..+|+|+|. +...+++..++
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~~----g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd------v~~rGiDip~v 100 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKEA----GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEV 100 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC------CCSSSCCCTTE
T ss_pred CCeEEEEeehhhhhHHHHHHHHhC----CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh------HHHccCCCCCC
Confidence 348999999999888777766654 88999999998876655443 45789999992 44567888889
Q ss_pred cEEEEccchhhh-ccCcHHHHHHHHhhCCCCceEEEEee
Q 015093 184 RMFVLDEADEML-SRGFKDQIYDIFQHLPGKIQVGVFSA 221 (413)
Q Consensus 184 ~~iIiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~lSA 221 (413)
++||.-++.... ..+....+.++-+..+.+...+++..
T Consensus 101 ~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~~~~~~~ 139 (181)
T d1t5la2 101 SLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYA 139 (181)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred CEEEEecCCcccccccHHHHHHHHHhhccccCceeEeec
Confidence 999988877532 12344445566555554433444433
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.67 E-value=0.024 Score=50.21 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.1
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+|+|+.||||+|||+.+
T Consensus 49 ksNILliGPTGvGKTlLA 66 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIA 66 (443)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cccEEEECCCCCCHHHHH
Confidence 468999999999999876
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.64 E-value=0.34 Score=35.96 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=56.3
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..+++|.|.++.-+++..+.+... +..+..++|+.......... .....|+|+|. +...+++..++
T Consensus 27 ~~k~iIF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td------v~~rGiDi~~v 96 (162)
T d1fuka_ 27 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQV 96 (162)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSC
T ss_pred CCcEEEEEEEEchHHHHHHHHhhc----CceEEEeccCCchhhHHHHHHHHhhcccceeeccc------cccccccCCCc
Confidence 448999999999999888877664 77888999988776655443 35678999994 33567788888
Q ss_pred cEEEEccc
Q 015093 184 RMFVLDEA 191 (413)
Q Consensus 184 ~~iIiDE~ 191 (413)
++||.=+.
T Consensus 97 ~~VI~~d~ 104 (162)
T d1fuka_ 97 SLVINYDL 104 (162)
T ss_dssp SEEEESSC
T ss_pred eEEEEecc
Confidence 88887554
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.29 E-value=0.034 Score=42.09 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=15.7
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.|+-+++.||+|||||.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia 21 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIA 21 (176)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3555889999999999875
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=92.20 E-value=0.41 Score=35.09 Aligned_cols=137 Identities=17% Similarity=0.155 Sum_probs=68.1
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCC
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGV 159 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (413)
+.|.-..|-|||.+++-.++..+-. +.+++++-=.+.-... .+. ......+........+.............
T Consensus 5 i~vytG~GKGKTTAAlG~alRA~G~---G~rV~ivQFlKg~~~~--ge~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~- 77 (157)
T d1g5ta_ 5 IIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPN--GER-NLLEPHGVEFQVMATGFTWETQNREADTA- 77 (157)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCC--HHH-HHHGGGTCEEEECCTTCCCCGGGHHHHHH-
T ss_pred EEEEeCCCCCcHHHHHHHHHHHhcC---CCEEEEEEEecCCccc--chh-hhhcccCcEEEEecCCCcccCCChHHHHH-
Confidence 6677788999999998777776544 3477776433211000 011 11112233332222111100000000000
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCccEEEEccchhhhccC--cHHHHHHHHhhCCCCceEEEEeeeCChhHHH
Q 015093 160 HVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRG--FKDQIYDIFQHLPGKIQVGVFSATMPPEALE 229 (413)
Q Consensus 160 ~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~~~~~~~~~~~~i~lSAT~~~~~~~ 229 (413)
.......... .......+++||+||+-...+.+ -...+..++...|....+|+..-.+++++.+
T Consensus 78 -----~a~~~~~~a~-~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e 143 (157)
T d1g5ta_ 78 -----ACMAVWQHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 143 (157)
T ss_dssp -----HHHHHHHHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred -----HHHHHHHHHH-HHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 0011111111 11233447999999999876655 3466777888888888777544445554443
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.16 E-value=0.045 Score=40.77 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=16.0
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
.+++++.||+|+|||.++-
T Consensus 2 ~k~I~l~G~~GsGKSTvak 20 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGR 20 (169)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578999999999998763
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.58 E-value=0.068 Score=42.89 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=31.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRA 130 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~ 130 (413)
|.-++|.|++|+|||..++..+.+.... +.++++++-... ..+..+.+..
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~~~---~~~~~~is~e~~-~~~~~~~~~~ 75 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEES-RAQLLRNAYS 75 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSSC-HHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh---ccccceeeccCC-HHHHHHHHHH
Confidence 4569999999999998876666654433 336777764322 3334444443
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.32 E-value=0.085 Score=46.59 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=29.3
Q ss_pred hCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELA 121 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~ 121 (413)
...++++|.|+||||||......+.+.+.. +..++|+=|.-++.
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l~~li~~~~~~---g~~~iiiD~kge~~ 91 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNGDML 91 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETTHHH
T ss_pred cccceEEEEeCCCCcHHHHHHHHHHHHHhC---CCCEEEEeCChhHH
Confidence 345789999999999997653334333322 33677777766543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.13 E-value=0.044 Score=40.34 Aligned_cols=15 Identities=20% Similarity=0.373 Sum_probs=13.2
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+++.|++|||||..+
T Consensus 5 Iii~G~pGsGKTTla 19 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWA 19 (152)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999765
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.03 E-value=0.069 Score=42.78 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++|+.||+|+|||..+
T Consensus 36 ~~~L~~GPpGtGKT~lA 52 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLA 52 (238)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46999999999999876
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=90.88 E-value=0.054 Score=40.83 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=15.5
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
+-++++.||+|||||.++
T Consensus 5 ~~~I~i~G~~GsGKTT~~ 22 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMA 22 (174)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH
Confidence 456999999999999876
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.59 E-value=0.31 Score=37.92 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-----c-ccCCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQ 347 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~-~~G~d~~~ 347 (413)
.+.+++|.+++++.|..+.+.+++ .+..+...+|+.+..++.+.++ ..+|+|+|+- + ...+++.+
T Consensus 71 ~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-----~~~IlV~TP~~l~~~l~~~~~~~~~ 145 (208)
T d1hv8a1 71 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 145 (208)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred cCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-----CCCEEEEChHHHHHHHHcCCCCccc
Confidence 445899999999999998777765 3567888888888766554442 3679999952 2 34578889
Q ss_pred CCEEEEcCC
Q 015093 348 VSLVINYDL 356 (413)
Q Consensus 348 ~~~vi~~~~ 356 (413)
+.++|.-+.
T Consensus 146 l~~lViDEa 154 (208)
T d1hv8a1 146 VKYFILDEA 154 (208)
T ss_dssp CCEEEEETH
T ss_pred CcEEEEECh
Confidence 999886543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.55 E-value=0.071 Score=40.01 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.2
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
++++.||+|||||..+
T Consensus 6 ~I~i~G~pGsGKTTia 21 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLG 21 (173)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999876
|
| >d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.034 Score=39.08 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHhcCCCcEEEEEcCcccHHHHHHHHhhCCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCccccCCC
Q 015093 265 WKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDLLARGID 344 (413)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~lIf~~~~~~a~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~G~d 344 (413)
.-+..|...++.. .+++|+.|.+...++.+.+.|++.++.+..+.+.. .+.++. +.|+..-+..|+-
T Consensus 21 ~p~~~L~~~i~~~-~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~~----------~~~~~~--~~i~~~~l~~GF~ 87 (117)
T d2eyqa2 21 APLDALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EASDRG--RYLMIGAAEHGFV 87 (117)
T ss_dssp STTHHHHHHHTTC-CSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSGG----------GCCTTC--CEEEECCCCSCEE
T ss_pred cHHHHHHHHHHhC-CCeEEEEECCccHHHHHHHHHHHcCCCceEecChh----------hhcCce--EEEEEecCccccc
Confidence 3455666666553 45899999999999999999999999887665542 233333 5666778999999
Q ss_pred CCCCCEEEEcC
Q 015093 345 VQQVSLVINYD 355 (413)
Q Consensus 345 ~~~~~~vi~~~ 355 (413)
+|....+|+.+
T Consensus 88 ~~~~~l~vItE 98 (117)
T d2eyqa2 88 DTVRNLALICE 98 (117)
T ss_dssp ETTTTEEEEEH
T ss_pred cCCCCEEEEEc
Confidence 99999888754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.47 E-value=0.072 Score=42.73 Aligned_cols=17 Identities=24% Similarity=0.263 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
.++|+.||+|+|||..+
T Consensus 36 ~~~Ll~GPpG~GKTtla 52 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLA 52 (239)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999776
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.43 E-value=0.055 Score=40.67 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.0
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-+++.||+|||||..+
T Consensus 4 lI~i~G~~GsGKTTva 19 (176)
T d2bdta1 4 LYIITGPAGVGKSTTC 19 (176)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999875
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.19 E-value=0.72 Score=34.39 Aligned_cols=75 Identities=11% Similarity=0.141 Sum_probs=56.1
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++.-++.....+... +..+..++|+.......... .+..+|+|+|.- ...++++.++
T Consensus 32 ~~k~iVF~~~~~~~~~l~~~L~~~----g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~------~~~Gid~~~v 101 (171)
T d1s2ma2 32 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL------LTRGIDIQAV 101 (171)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC------SSSSCCCTTE
T ss_pred CCceEEEEeeeehhhHhHHhhhcc----cccccccccccchhhhhhhhhhcccCccccccchhH------hhhcccccee
Confidence 448999999999888877777665 77888899888766554443 356789999942 3567778888
Q ss_pred cEEEEccch
Q 015093 184 RMFVLDEAD 192 (413)
Q Consensus 184 ~~iIiDE~h 192 (413)
++||.-++.
T Consensus 102 ~~VI~~d~p 110 (171)
T d1s2ma2 102 NVVINFDFP 110 (171)
T ss_dssp EEEEESSCC
T ss_pred EEEEecCCc
Confidence 888866665
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.19 E-value=0.051 Score=41.46 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=15.4
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
-+.++|.||+|+|||..+
T Consensus 7 ~K~I~i~G~~GsGKTTla 24 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLV 24 (192)
T ss_dssp CEEEEEECCTTSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356999999999999765
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.08 E-value=0.085 Score=42.30 Aligned_cols=42 Identities=12% Similarity=-0.061 Sum_probs=26.1
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhccc---ccCceeEEEEccc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDY---ESLQCQALVLAPT 117 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~---~~~~~~~lvl~P~ 117 (413)
.|+-++|.||+|+|||..++-.+.+.... ...+..++++.-.
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~ 77 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 77 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeec
Confidence 45669999999999998775544433221 1223456666443
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.77 Score=35.26 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=53.7
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
+.++||.|+|+.-++.+...+... +..+..++|+.......... ....+|+|+|. ....+++..++
T Consensus 30 ~~~~IIF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd------~~~~GiD~p~v 99 (200)
T d1oywa3 30 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNV 99 (200)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTC
T ss_pred CCCEEEEEeeehhhHHhhhhhccC----CceeEEecCCCcHHHHHHHHHHHhcccceEEEecc------hhhhccCCCCC
Confidence 458999999999998888777664 77888999988766554443 35678999994 33456777778
Q ss_pred cEEEEcc
Q 015093 184 RMFVLDE 190 (413)
Q Consensus 184 ~~iIiDE 190 (413)
++||.=+
T Consensus 100 ~~VI~~~ 106 (200)
T d1oywa3 100 RFVVHFD 106 (200)
T ss_dssp CEEEESS
T ss_pred CEEEECC
Confidence 8877433
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.55 E-value=0.11 Score=40.70 Aligned_cols=27 Identities=19% Similarity=-0.061 Sum_probs=21.0
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
|+-++|.||+|+|||..++..+.+...
T Consensus 23 G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 23 GSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 556999999999999887666665543
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.13 E-value=0.87 Score=33.79 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=65.2
Q ss_pred EEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----
Q 015093 80 VIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL---- 155 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 155 (413)
..+.-+....|... +..++.. ....+++|.|+++.-++...+.++.. +..+..++|+..........
T Consensus 11 ~~v~v~~~~~K~~~-L~~ll~~----~~~~k~iiF~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~fk 81 (168)
T d2j0sa2 11 FFVAVEREEWKFDT-LCDLYDT----LTITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFR 81 (168)
T ss_dssp EEEEESSTTHHHHH-HHHHHHH----HTSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEecChHHHHHH-HHHHHHh----CCCCceEEEeeeHHHHHHHHHHhhhc----ccchhhhhhhhhHHHHHHHHHHHh
Confidence 34444555567533 3333332 23448999999999998887777664 67788888888766654443
Q ss_pred hcCCcEEEeChHHHHHHHHcCCCCCCCccEEEEccc
Q 015093 156 SAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEA 191 (413)
Q Consensus 156 ~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~ 191 (413)
....+|+|+|. +...+++..++++||.=++
T Consensus 82 ~g~~~iLv~Td------~~~rGiDi~~v~~VIn~d~ 111 (168)
T d2j0sa2 82 SGASRVLISTD------VWARGLDVPQVSLIINYDL 111 (168)
T ss_dssp HTSSCEEEECG------GGSSSCCCTTEEEEEESSC
T ss_pred cCCccEEeccc------hhcccccccCcceEEEecC
Confidence 35678999994 3456788888888876554
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.96 E-value=0.1 Score=42.63 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.7
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+++.||+|+|||..+
T Consensus 33 ~~ilL~GpPGtGKT~la 49 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLR 49 (273)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34899999999999875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=88.69 E-value=0.21 Score=40.85 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=28.1
Q ss_pred hhCCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEccc
Q 015093 74 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPT 117 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~ 117 (413)
+..|.-+++.|+||+|||..++..+.+... ..+.+++++..-
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~--~~g~~v~~~s~E 73 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhh--hcccceeEeeec
Confidence 345667999999999999766554443321 224478888754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=88.55 E-value=0.1 Score=39.17 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.1
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+-+++.|++|||||..+
T Consensus 3 ~kiI~l~G~~GsGKsTva 20 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455788999999999776
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=88.24 E-value=0.14 Score=38.03 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.8
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+++++.|++|+|||.++
T Consensus 1 k~I~liG~~GsGKsTi~ 17 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLA 17 (161)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46888999999999876
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.19 E-value=0.31 Score=38.36 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=54.4
Q ss_pred CCcEEEEEcCcccHHHHHHHHhh----CCCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCc------cccCCCCCCC
Q 015093 279 ITQSVIFVNTRRKVDWLTDQMRS----RDHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDL------LARGIDVQQV 348 (413)
Q Consensus 279 ~~~~lIf~~~~~~a~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~------~~~G~d~~~~ 348 (413)
..+++|++|+++.|.++++.+.. .++.+..+.|+.+..+....+. . ...|+|+|+- -...+++.++
T Consensus 85 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~---~-~~~Ilv~TPgrl~~~~~~~~~~~~~l 160 (222)
T d2j0sa1 85 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y-GQHVVAGTPGRVFDMIRRRSLRTRAI 160 (222)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhc---c-CCeEEeCCCCcHHhcccccccccccc
Confidence 34789999999999999888765 3567888888888766554443 2 3579999962 2466788889
Q ss_pred CEEEEcC
Q 015093 349 SLVINYD 355 (413)
Q Consensus 349 ~~vi~~~ 355 (413)
+++|+-+
T Consensus 161 ~~lVlDE 167 (222)
T d2j0sa1 161 KMLVLDE 167 (222)
T ss_dssp CEEEEET
T ss_pred eeeeecc
Confidence 9998644
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.08 E-value=0.28 Score=37.54 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=17.4
Q ss_pred hhCCCcEEEeCCCCCchhHHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~~ 95 (413)
+.+.+-+++.||+|||||..+-
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~ 26 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCE 26 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 3445668899999999998763
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.08 E-value=0.12 Score=41.69 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.9
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+.+|+.||+|+|||..+
T Consensus 41 ~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALA 57 (246)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45999999999999775
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.06 E-value=0.13 Score=41.38 Aligned_cols=53 Identities=8% Similarity=-0.022 Sum_probs=30.0
Q ss_pred cCccCCCCCHHHHHHHHhCCCCCCcHH-HHhhhhh-----hhCCCcEEEeCCCCCchhHHH
Q 015093 40 DSFDSMGLKENLLRGIYAYGFEKPSAI-QQRGIVP-----FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 40 ~~~~~~~l~~~~~~~l~~~~~~~~~~~-Q~~~~~~-----~~~~~~~lv~~~tGsGKT~~~ 94 (413)
.+|+++...+...+.|...= .-+.. ....... ....+.+++.||+|+|||.++
T Consensus 11 ~~~~dlig~~~~~~~L~~~l--~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a 69 (253)
T d1sxja2 11 TNLQQVCGNKGSVMKLKNWL--ANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 69 (253)
T ss_dssp SSGGGCCSCHHHHHHHHHHH--HTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHH--HhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHH
Confidence 46888888888777665420 00000 0001101 111246999999999999775
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=88.02 E-value=0.15 Score=38.98 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
|-.+++.||+|||||+.+-
T Consensus 3 ~~riil~G~pGSGKsT~a~ 21 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAP 21 (190)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH
Confidence 4457889999999998874
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=88.00 E-value=0.14 Score=38.56 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=15.8
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
+|.-+++.|++|||||.++
T Consensus 5 ~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4555789999999999876
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.94 E-value=0.17 Score=40.62 Aligned_cols=51 Identities=8% Similarity=-0.105 Sum_probs=31.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhccccc---CceeEEEEcccHHHHHHHHH
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYES---LQCQALVLAPTRELAQQIEK 126 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~---~~~~~lvl~P~~~l~~q~~~ 126 (413)
.|+-++|.|++|+|||..++..+.+...... ....++++.........+..
T Consensus 36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (258)
T d1v5wa_ 36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR 89 (258)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHH
Confidence 4566999999999999888766665543322 22345555554444433333
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.91 E-value=0.14 Score=38.83 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=14.2
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
++|.||+|||||+.+-
T Consensus 3 I~i~G~pGSGKsT~a~ 18 (182)
T d1zina1 3 LVLMGLPGAGKGTQAE 18 (182)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999998763
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=87.86 E-value=0.11 Score=38.87 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=13.9
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
+++.|++|||||..+-
T Consensus 9 ivl~G~~GsGKsT~a~ 24 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVAS 24 (171)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999998763
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=87.54 E-value=0.15 Score=38.70 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=14.1
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
+++.||+|||||+.+-
T Consensus 3 I~i~G~pGSGKsT~a~ 18 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQAD 18 (182)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999998763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.36 E-value=0.21 Score=39.52 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=25.4
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAP 116 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P 116 (413)
.|.-.+|.|++|+|||..++-.+.+.+... +.+++++..
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~~--~~~~~~~s~ 63 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTF 63 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCcccccc
Confidence 356699999999999977654444333222 225677664
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.28 E-value=0.25 Score=37.26 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.4
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+-++|.|++|||||...
T Consensus 2 kiI~i~G~~GsGKsT~~ 18 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSS 18 (190)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44789999999999765
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.23 E-value=0.16 Score=38.52 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.9
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
++++.||+|||||+.+-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~ 19 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVK 19 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=86.75 E-value=0.21 Score=37.43 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=15.2
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
+.+++.|++|+|||.++-
T Consensus 3 ~~Iil~G~~GsGKSTia~ 20 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGR 20 (170)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 457889999999998773
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=86.51 E-value=0.16 Score=38.82 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.6
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
.+++.||+|||||..+-
T Consensus 5 ~I~i~GppGsGKsT~a~ 21 (189)
T d1zaka1 5 KVMISGAPASGKGTQCE 21 (189)
T ss_dssp CEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998763
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.21 E-value=0.17 Score=38.26 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=14.0
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
.+++.||+|||||+.+
T Consensus 2 ~I~i~G~pGSGKsT~~ 17 (179)
T d1e4va1 2 RIILLGAPVAGKGTQA 17 (179)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999886
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.15 E-value=0.17 Score=40.58 Aligned_cols=26 Identities=15% Similarity=-0.050 Sum_probs=20.5
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhc
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
|+-++|.||+|+|||..++..+.+..
T Consensus 36 G~~~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 36 QAITEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 45699999999999988766665544
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.00 E-value=0.2 Score=38.46 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=13.9
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
+++.||+|||||..+-
T Consensus 11 I~i~GppGSGKsT~a~ 26 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCE 26 (196)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999998763
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.99 E-value=0.18 Score=38.73 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.1
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-++|.||+|||||..+
T Consensus 8 iI~i~G~pGSGKsT~a 23 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999876
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=85.98 E-value=0.12 Score=43.69 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.1
Q ss_pred CCCcEEEeCCCCCchhHHH
Q 015093 76 KGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~ 94 (413)
.+.++|+.||+|+|||..+
T Consensus 27 ~~h~vLl~G~pG~GKT~la 45 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAV 45 (333)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCCeEEEECCCCccHHHHH
Confidence 3467999999999999764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.95 E-value=0.2 Score=40.03 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCchhHHHHHHHHHhcc
Q 015093 76 KGLDVIQQAQSGTGKTATFCSGILQQLD 103 (413)
Q Consensus 76 ~~~~~lv~~~tGsGKT~~~~~~i~~~l~ 103 (413)
.|.-++|.|++|+|||..++..+.+.+.
T Consensus 33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~ 60 (258)
T d2i1qa2 33 SQSVTEFAGVFGSGKTQIMHQSCVNLQN 60 (258)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3456999999999999888777766553
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.85 E-value=0.17 Score=38.18 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.6
Q ss_pred cEEEeCCCCCchhHHH
Q 015093 79 DVIQQAQSGTGKTATF 94 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~ 94 (413)
-++++|++|||||..+
T Consensus 16 liil~G~pGsGKST~a 31 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFI 31 (172)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3888999999999654
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=85.79 E-value=0.21 Score=38.22 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=15.0
Q ss_pred cEEEeCCCCCchhHHHHH
Q 015093 79 DVIQQAQSGTGKTATFCS 96 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~ 96 (413)
.+++.||+|||||..+-.
T Consensus 8 rIiliG~PGSGKtT~a~~ 25 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSR 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488899999999988643
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.71 E-value=0.1 Score=40.03 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.5
Q ss_pred CcEEEeCCCCCchhHHHH
Q 015093 78 LDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~ 95 (413)
..+++.|++|||||..+-
T Consensus 20 ~vI~L~G~pGSGKTTiAk 37 (195)
T d1x6va3 20 CTVWLTGLSGAGKTTVSM 37 (195)
T ss_dssp EEEEEESSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346689999999998763
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.68 E-value=0.21 Score=38.22 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.1
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
++|.||+|||||+.+-
T Consensus 4 I~i~GppGSGKsT~a~ 19 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCA 19 (194)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998873
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.55 E-value=2 Score=36.62 Aligned_cols=114 Identities=14% Similarity=0.088 Sum_probs=56.5
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhccccc-----CceeEEEEcccHHHH-----HHHHHHHHHhhccc---CceEEEEEC
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYES-----LQCQALVLAPTRELA-----QQIEKVMRALGDYM---GVKVHACVG 144 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-----~~~~~lvl~P~~~l~-----~q~~~~~~~~~~~~---~~~~~~~~~ 144 (413)
++.+++|++|.|||...--.+ ..+..+. .+.+++.+-+..-++ .+|.+.++.+.... ...+.++.+
T Consensus 44 ~n~llvG~~GvGKtaiv~~la-~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfid 122 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLA-QRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID 122 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHH-HHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CCCeEECCCCCCHHHHHHHHH-HHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEec
Confidence 459999999999997653222 2232221 123444444443333 24555554443221 222332222
Q ss_pred Ccch-------------HHH-HHHH-hcCCc-EEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 145 GTSV-------------RED-QRIL-SAGVH-VVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 145 ~~~~-------------~~~-~~~~-~~~~~-Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
+... ... ...+ .+... |--+||+.+.. +.........|..|-++|-+.
T Consensus 123 e~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~-~e~d~al~rrF~~v~v~ep~~ 186 (387)
T d1qvra2 123 ELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTV 186 (387)
T ss_dssp CC-------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCH
T ss_pred cHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHHHH-hcccHHHHHhcccccCCCCcH
Confidence 1110 000 0111 12233 55788888865 566666667789999999885
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=85.53 E-value=0.65 Score=38.20 Aligned_cols=53 Identities=19% Similarity=0.131 Sum_probs=38.9
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHHhcCCcEEEeC
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRILSAGVHVVVGT 165 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 165 (413)
++++|.||+..-+++.++.+++. +..+..++|........+......+|+|+|
T Consensus 37 g~~~~F~~s~~~~~~~a~~L~~~----g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t 89 (299)
T d1yksa2 37 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILAT 89 (299)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEES
T ss_pred CCEEEEeCCHHHHHHHHHHHHhc----CCeEEEEcCcCcHhHHhhhhcCCcCEEEEe
Confidence 48999999999999998888875 567889999887777777777788999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.41 E-value=0.23 Score=37.59 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.4
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
.+++.||+|||||..+-
T Consensus 4 rIvl~G~pGSGKtT~a~ 20 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAP 20 (180)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998863
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.13 E-value=1.7 Score=32.13 Aligned_cols=74 Identities=8% Similarity=0.048 Sum_probs=53.1
Q ss_pred eeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCcc
Q 015093 109 CQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYIR 184 (413)
Q Consensus 109 ~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 184 (413)
.+++|.|+++.-++...+.+.+. +..+..++|+.........+ .+..+|+|+|.- ...+.++..++
T Consensus 28 ~k~iIF~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~------~~~Gid~~~~~ 97 (168)
T d1t5ia_ 28 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVN 97 (168)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGCS
T ss_pred CeEEEEEeeeecchhhhhhhccc----cccccccccccchhhhhhhhhhhccccceeeecccc------ccchhhcccch
Confidence 48999999999888877777664 77888999988766554433 346789999922 24556666777
Q ss_pred EEEEccch
Q 015093 185 MFVLDEAD 192 (413)
Q Consensus 185 ~iIiDE~h 192 (413)
++|.=+.-
T Consensus 98 ~vi~~~~p 105 (168)
T d1t5ia_ 98 IAFNYDMP 105 (168)
T ss_dssp EEEESSCC
T ss_pred hhhhhhcc
Confidence 77766554
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.07 E-value=0.38 Score=39.02 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.7
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
.+.+|+.||+|+|||..+
T Consensus 41 ~~giLL~Gp~GtGKT~l~ 58 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLA 58 (265)
T ss_dssp CCEEEEBCCTTSSHHHHH
T ss_pred CCeEEEECCCCCcchhHH
Confidence 467999999999999765
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=85.00 E-value=1 Score=35.92 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.5
Q ss_pred hCCCcEEEeCCCCCchhHHH
Q 015093 75 CKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 75 ~~~~~~lv~~~tGsGKT~~~ 94 (413)
..+..++|.|++|+|||..+
T Consensus 21 ~~~~pvlI~Ge~GtGK~~~A 40 (247)
T d1ny5a2 21 CAECPVLITGESGVGKEVVA 40 (247)
T ss_dssp TCCSCEEEECSTTSSHHHHH
T ss_pred CCCCCEEEECCCCcCHHHHH
Confidence 34567999999999999765
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.99 E-value=0.4 Score=38.78 Aligned_cols=43 Identities=16% Similarity=0.042 Sum_probs=29.1
Q ss_pred CCcEEEeCCCCCchhHHHHHHHHHhcccccCceeEEEEcccHHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFCSGILQQLDYESLQCQALVLAPTRELAQ 122 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~~~i~~~l~~~~~~~~~lvl~P~~~l~~ 122 (413)
|+-..+.+|+|+|||..++..+.+.... +..++|+----....
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~~~q~~---g~~~vyidtE~~~~~ 96 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDP 96 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCH
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcC---CCEEEEEccccccCH
Confidence 4558999999999998887766665433 336666654444433
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.96 E-value=2.7 Score=33.64 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=59.7
Q ss_pred CcEEEeCCCCCchhHHHHHHHHHhccccc-----CceeEEEEcccHHHH-----HHHHHHHHHhhccc--CceEEEEECC
Q 015093 78 LDVIQQAQSGTGKTATFCSGILQQLDYES-----LQCQALVLAPTRELA-----QQIEKVMRALGDYM--GVKVHACVGG 145 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~~~~i~~~l~~~~-----~~~~~lvl~P~~~l~-----~q~~~~~~~~~~~~--~~~~~~~~~~ 145 (413)
++++++||+|.|||...--.+. .+..+. .+.+++.+-+..-++ .+|.+.++.+.... .-++.++..+
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~-ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDe 118 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAW-RIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDE 118 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH-HHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETT
T ss_pred CCcEEECCCCCcHHHHHHHHHH-HHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhccCCceEEecc
Confidence 5699999999999966533332 222211 122444444433332 33444444433222 1223333221
Q ss_pred ---------cc--hHHHHHHHhc-----CCc-EEEeChHHHHHHHHcCCCCCCCccEEEEccchh
Q 015093 146 ---------TS--VREDQRILSA-----GVH-VVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADE 193 (413)
Q Consensus 146 ---------~~--~~~~~~~~~~-----~~~-Iii~T~~~l~~~~~~~~~~~~~~~~iIiDE~h~ 193 (413)
.. ...-...+.+ +.. |--+||+.+...++........+..|-++|-..
T Consensus 119 ih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~ 183 (268)
T d1r6bx2 119 IHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSI 183 (268)
T ss_dssp TTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCH
T ss_pred hHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCH
Confidence 11 1112222321 223 446788888877777666667789999999884
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.61 E-value=2 Score=31.16 Aligned_cols=74 Identities=14% Similarity=0.299 Sum_probs=52.0
Q ss_pred ceeEEEEcccHHHHHHHHHHHHHhhcccCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015093 108 QCQALVLAPTRELAQQIEKVMRALGDYMGVKVHACVGGTSVREDQRIL----SAGVHVVVGTPGRVFDMLRRQSLRPDYI 183 (413)
Q Consensus 108 ~~~~lvl~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 183 (413)
..++||.|+++.-+.++.+.+++. +..+..++++.........+ .+...|+|+|.- + ..+++...+
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~-~-----~~Gid~~~v 97 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-M-----SRGIDVNDL 97 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-H-----HHHCCCSCC
T ss_pred CCCEEEEECchHHHHHHHhhhccc----ccccccccccchhhhhhhhhhhhhcccceeeeehhH-H-----hhhhhhccC
Confidence 347999999999888887777764 77888888887765554443 346789999932 1 234566777
Q ss_pred cEEEEccc
Q 015093 184 RMFVLDEA 191 (413)
Q Consensus 184 ~~iIiDE~ 191 (413)
++||.=++
T Consensus 98 ~~Vi~~d~ 105 (155)
T d1hv8a2 98 NCVINYHL 105 (155)
T ss_dssp SEEEESSC
T ss_pred cEEEEecC
Confidence 88775433
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.48 E-value=0.32 Score=41.43 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=15.9
Q ss_pred CCcEEEeCCCCCchhHHHH
Q 015093 77 GLDVIQQAQSGTGKTATFC 95 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~~ 95 (413)
++.+++.||+|+|||..+.
T Consensus 154 ~~~~~~~g~~~~gk~~~~~ 172 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAA 172 (362)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred cCeEEEECCCCCCHHHHHH
Confidence 3569999999999997763
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=84.40 E-value=0.27 Score=36.89 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=16.7
Q ss_pred cEEEeCCCCCchhHHHHHHHHHhc
Q 015093 79 DVIQQAQSGTGKTATFCSGILQQL 102 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~~~i~~~l 102 (413)
.++|.||+|+|||.. +..++..+
T Consensus 2 ki~I~G~~G~GKSTL-l~~i~~~l 24 (178)
T d1ye8a1 2 KIIITGEPGVGKTTL-VKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCcHHHHH-HHHHHhcC
Confidence 378999999999975 34444444
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.43 E-value=0.2 Score=40.94 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=13.0
Q ss_pred EEEeCCCCCchhHHHH
Q 015093 80 VIQQAQSGTGKTATFC 95 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~~ 95 (413)
+++.||+|+|||.+.-
T Consensus 49 l~l~GppGtGKT~l~~ 64 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAK 64 (287)
T ss_dssp EECTTCCSSSHHHHHH
T ss_pred EEeECCCCCCHHHHHH
Confidence 4568999999997753
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.01 E-value=0.34 Score=40.61 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=19.0
Q ss_pred hhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 71 IVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 71 ~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
++.++.|.+ ++..|+||||||.+.
T Consensus 68 v~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 68 VKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHcCCCcceeeecccCCCCceec
Confidence 455567766 788999999999775
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=82.75 E-value=0.57 Score=34.50 Aligned_cols=15 Identities=47% Similarity=0.508 Sum_probs=12.9
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+.|.|+.|||||...
T Consensus 5 i~itG~~GSGKTTL~ 19 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLL 19 (170)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999754
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.55 E-value=0.31 Score=36.92 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.0
Q ss_pred CCcEEEeCCCCCchhHHH
Q 015093 77 GLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 77 ~~~~lv~~~tGsGKT~~~ 94 (413)
|+-+++.||.|+|||...
T Consensus 2 G~iivl~GpsG~GK~tl~ 19 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVV 19 (182)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 455889999999999764
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.40 E-value=1.2 Score=34.27 Aligned_cols=104 Identities=7% Similarity=0.141 Sum_probs=64.4
Q ss_pred CcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCc-----c-ccCCCCCCC
Q 015093 280 TQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQV 348 (413)
Q Consensus 280 ~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~-----~-~~G~d~~~~ 348 (413)
..++|.+|+++.+..+.+.++.. ...+....|+.+....... +.+...+|+|+|+- + ...+++.++
T Consensus 70 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l 146 (207)
T d1t6na_ 70 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 146 (207)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHH---HHhcCCCEEEeCcchhhhhccCCceecccc
Confidence 46899999999999988888653 2356677788776544433 33456789999972 2 245788899
Q ss_pred CEEEEcCCC--CChhHHHhhhcccCCCCCcceEEEEeccc
Q 015093 349 SLVINYDLP--TQPENYLHRIGRSGRFGRKGVAINFVTRD 386 (413)
Q Consensus 349 ~~vi~~~~~--~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 386 (413)
.++|..+.. .+...+.+.+-+..+.-....-+++++..
T Consensus 147 ~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT 186 (207)
T d1t6na_ 147 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 186 (207)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC
T ss_pred ceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeee
Confidence 998865432 11122333333433332233455666554
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=82.38 E-value=0.45 Score=37.83 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.8
Q ss_pred hhCCCcEEEeCCCCCchhHH
Q 015093 74 FCKGLDVIQQAQSGTGKTAT 93 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~ 93 (413)
+.+|..+.|+||+|||||..
T Consensus 26 i~~Ge~vaIvG~sGsGKSTL 45 (241)
T d2pmka1 26 IKQGEVIGIVGRSGSGKSTL 45 (241)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44578899999999999954
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.13 E-value=0.4 Score=35.53 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=14.1
Q ss_pred cEEEeCCCCCchhHHHH
Q 015093 79 DVIQQAQSGTGKTATFC 95 (413)
Q Consensus 79 ~~lv~~~tGsGKT~~~~ 95 (413)
++++.|++|+|||.++-
T Consensus 3 ~IvliG~~G~GKSTig~ 19 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGR 19 (165)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 36778999999998763
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.95 E-value=0.36 Score=36.74 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=12.6
Q ss_pred EEEeCCCCCchhHHH
Q 015093 80 VIQQAQSGTGKTATF 94 (413)
Q Consensus 80 ~lv~~~tGsGKT~~~ 94 (413)
+-|.||+|||||..+
T Consensus 25 IgI~G~~GSGKSTla 39 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLA 39 (198)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 448999999999765
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.35 E-value=0.35 Score=36.79 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.2
Q ss_pred CcEEEeCCCCCchhHHH
Q 015093 78 LDVIQQAQSGTGKTATF 94 (413)
Q Consensus 78 ~~~lv~~~tGsGKT~~~ 94 (413)
+-++|.||+|+|||...
T Consensus 2 rpIvl~GpsG~GK~tl~ 18 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999754
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=81.28 E-value=0.84 Score=36.84 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=36.9
Q ss_pred hhhhhCCCcEEEeCCCCCchhHHHHHHHHHhccc-------ccCceeEEEEcccHHHHHHHHHHHHHhhc
Q 015093 71 IVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-------ESLQCQALVLAPTRELAQQIEKVMRALGD 133 (413)
Q Consensus 71 ~~~~~~~~~~lv~~~tGsGKT~~~~~~i~~~l~~-------~~~~~~~lvl~P~~~l~~q~~~~~~~~~~ 133 (413)
++-+..|.-.+|.|++|+|||..++..++..... .....+++++.- ..-..++.+++..+..
T Consensus 23 i~G~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~-E~~~~~~~~Rl~~~~~ 91 (274)
T d1nlfa_ 23 LPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPA-EDPPTAIHHRLHALGA 91 (274)
T ss_dssp ETTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEES-SSCHHHHHHHHHHHHT
T ss_pred hCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEec-cchHHHHHHHHHHHhh
Confidence 4445567779999999999998776555432211 112235676653 3334555566665543
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.83 E-value=0.56 Score=37.53 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.2
Q ss_pred hhCCCcEEEeCCCCCchhHHH
Q 015093 74 FCKGLDVIQQAQSGTGKTATF 94 (413)
Q Consensus 74 ~~~~~~~lv~~~tGsGKT~~~ 94 (413)
+.+|+.+.|.||+|||||...
T Consensus 37 i~~Ge~vaivG~sGsGKSTLl 57 (251)
T d1jj7a_ 37 LRPGEVTALVGPNGSGKSTVA 57 (251)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 345788999999999999653
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Neurospora crassa [TaxId: 5141]
Probab=80.67 E-value=0.47 Score=40.31 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=19.1
Q ss_pred hhhhhhCCCc--EEEeCCCCCchhHHH
Q 015093 70 GIVPFCKGLD--VIQQAQSGTGKTATF 94 (413)
Q Consensus 70 ~~~~~~~~~~--~lv~~~tGsGKT~~~ 94 (413)
.++.++.|.+ ++..|+||||||.+.
T Consensus 71 lv~~~l~G~n~ti~aYG~tgSGKT~Tm 97 (354)
T d1goja_ 71 TVDDILNGYNGTVFAYGQTGAGKSYTM 97 (354)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhhccCceeEEecccCCCCcceee
Confidence 3445567766 777999999999775
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.51 E-value=1.8 Score=33.13 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=51.8
Q ss_pred CCCcEEEEEcCcccHHHHHHHHhhC-----CCeeEeecCCCCHHHHHHHHHHHhcCCCeEEEEeCc------cccCCCCC
Q 015093 278 AITQSVIFVNTRRKVDWLTDQMRSR-----DHTVSATHGDMDQNSRDIIMREFRSGSSRVLITTDL------LARGIDVQ 346 (413)
Q Consensus 278 ~~~~~lIf~~~~~~a~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~------~~~G~d~~ 346 (413)
....++|.+++++.+..+++.+... +..+....|+....++...+ ....+++|+|+- -...+++.
T Consensus 70 ~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~ivv~TPgrl~~~~~~~~~~~~ 145 (206)
T d1veca_ 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred cCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHH----HhccCeEEeCCccccccccchhcccc
Confidence 4457999999999999988877642 35566777777665444333 356789999962 23457778
Q ss_pred CCCEEEEcC
Q 015093 347 QVSLVINYD 355 (413)
Q Consensus 347 ~~~~vi~~~ 355 (413)
+++++|.-+
T Consensus 146 ~l~~lVlDE 154 (206)
T d1veca_ 146 HVQMIVLDE 154 (206)
T ss_dssp TCCEEEEET
T ss_pred ccceEEEec
Confidence 899888644
|