Citrus Sinensis ID: 015100

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---

MVTTVAPPLSLPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKKLVA

ccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEcccccccccEEEEccccccccccccccEEEEEEcccccccHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHccEEEEcccccccccccccccccccccccEEcccccccHHHHHHHHHHccEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccccccccccHHHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccc

ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHcccccccEEEEEEEEEcccccccccEEEcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEHHHHHHHcHHHHHHHHHHHHccEEEccHHHHHHHHHHHHHHHHHcccccccEEcccHcHHHHHHHHHcccEEEEccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccEccccccccccccccEEEEcccccccEEEEEcccccEEEEEccccHHHcccccccccccccccccccccccccccHccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccEccccccccccccccEEcc

mvttvapplslppsagsrvspkTVERAVKALLKWLKsnsqtqkpqlleqDDFVYLILTLkkipqvsrtnafkiplphsllgndsdnppeiclimddrpksnltkDAVMKKIkndnlpitKVIKITKlktdyrpfeakrklcdsydifladkrvvpllpkllgkhffkkkkipvpvdlkhqNWKEQIEKVCGSALLYLrtgtcsvlkvgkvsmgaEDIAENVIAAINGLLESlalpvyqavpdlklkiegvkenegegqdkdsekenaedvndhgskkklkkkkgrihEVRYMdstigevldedelgsdddgegdvgesedgedsedgkmssgdilgkkrkkgdKERAQKLPKKVAKVKKDelssdmknedvgkqkkqkkvglslkndeekssgkekKKSMLGKVKKEKKKLVA

mvttvapplslppsagsrvspkTVERAVKALLKWLksnsqtqkpqlleQDDFVYLILTLKkipqvsrtNAFKIplphsllgndsdnpPEICLIMDDRPKSNLTKDAVmkkikndnlpitkvikitklktdyrpfeakrKLCDSYDIFLADKRVVPLLPKLlgkhffkkkkipvpvdlkhqnWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGVkenegegqdkdsekenaedvndhgskkklkkkkgrihevrymdstigevldedelgsdddGEGDvgesedgedsedgkmssgdilgkkrkkgdkeraqklpkkvakvkkdelssdmknedvgkqkkqkkvglslkndeekssgkekkksmlgkvkkekkklva

MvttvapplslppsaGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPitkvikitklktDYRPFEAKRKLCDSYDIFLADKRVVpllpkllgkhffkkkkipvpVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSkkklkkkkGRIHEVRYMDSTIgevldedelgsdddgegdvgesedgedsedgkmssgdILGKKRKKGDKERAQklpkkvakvkkDELSSDMKNEDvgkqkkqkkvgLSLKNDeekssgkekkksmlgkvkkekkklvA

***************************VKALLKWL**********LLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLL*********ICLIM***********AVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKI**********************************************************************************************************************************************************************

************************ERAVKAL*******************DFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGVKEN****************************************************************************************************************************************************************

**********************TVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGVKE********************************RIHEVRYMDSTIGEVLDEDE***************************GDIL******************************************************************************

*****************RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEGVKENEG*****DSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDS***********************************************************************************************************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		413	2.2.26 [Sep-21-2011]
Q5RCE6		490	Ribosomal L1 domain-conta	yes	no	0.905	0.763	0.279	3e-26
O76021		490	Ribosomal L1 domain-conta	yes	no	0.905	0.763	0.279	3e-26
A4FV97		482	Ribosomal L1 domain-conta	yes	no	0.489	0.419	0.328	7e-26
Q9UT32		373	Putative ribosome biogene	yes	no	0.472	0.522	0.350	4e-23
Q9Y7R7		284	Putative ribosome biogene	no	no	0.520	0.757	0.272	2e-14
Q9VLK2		681	Ribosomal L1 domain-conta	yes	no	0.416	0.252	0.279	8e-07
Q9UWR8		219	50S ribosomal protein L1P	yes	no	0.230	0.433	0.305	7e-06
O57782		219	50S ribosomal protein L1P	yes	no	0.230	0.433	0.294	3e-05
Q8TZJ9		216	50S ribosomal protein L1P	yes	no	0.230	0.439	0.294	4e-05
P53028		214	60S ribosomal protein L10	N/A	no	0.222	0.429	0.268	6e-05

>sp\|Q5RCE6\|RL1D1_PONAB Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2	Back alignment and function desciption

 Score =  120 bits (300), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 200/418 (47%), Gaps = 44/418 (10%)

Query: 13  PSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFK 72
           P+A  ++  + V +AV ALL   KS        LL +++ ++L++ L KIP  S+    +
Sbjct: 25  PTARKQLDKEQVRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVR 81

Query: 73  IPLPHSLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPITKVIKITKLKT 129
           + LPHS+  +  D    ICL   D P S   K +   +K+ N +    ++++I +  LK 
Sbjct: 82  LTLPHSIRSDSED----ICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKK 137

Query: 130 DYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKV 189
           +Y+ +EAK +L  S+D FL D R+  LLP L+G+HF+++KK+PV V+L  +N   +I   
Sbjct: 138 EYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDC 197

Query: 190 CGSALLYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIE 248
            G  +L + ++G+CS +++G V M  E I EN++A   GL E L    +++V  L +K E
Sbjct: 198 IGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLP-EKWESVKLLFVKTE 256

Query: 249 ---------GVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEV 299
                        N  E   +    +  ++      ++  +K+K R  + +    T   V
Sbjct: 257 KSAALPIFSSFVSNWDEATKRSLLNKKKKEARRKRRERNFEKQKERKKKRQQARKT-ASV 315

Query: 300 LDEDELGSDDDGEGDV--GESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKV--- 354
           L +D++   + G+  V   ES+  +  E GK   G   GK + K   E   ++P+ V   
Sbjct: 316 LSKDDVA-PESGDTTVKKPESKKEQTPEHGKKKRGR--GKAQVKATNESEDEIPQLVPIG 372

Query: 355 --------------AKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKK 398
                         A  KK    S   +   GK++K      + K  E ++ GK  +K
Sbjct: 373 KKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPASETPKAAESETPGKSPEK 430

Pongo abelii (taxid: 9601)

>sp\|O76021\|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3	Back alignment and function description

>sp\|A4FV97\|RL1D1_BOVIN Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1 PE=2 SV=1	Back alignment and function description

>sp\|Q9UT32\|RL1DB_SCHPO Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8F11.04 PE=3 SV=1	Back alignment and function description

>sp\|Q9Y7R7\|RL1DA_SCHPO Putative ribosome biogenesis protein C306.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC306.07c PE=3 SV=1	Back alignment and function description

>sp\|Q9VLK2\|Y3096_DROME Ribosomal L1 domain-containing protein CG13096 OS=Drosophila melanogaster GN=CG13096 PE=1 SV=1	Back alignment and function description

>sp\|Q9UWR8\|RL1_PYRAB 50S ribosomal protein L1P OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpl1p PE=3 SV=1	Back alignment and function description

>sp\|O57782\|RL1_PYRHO 50S ribosomal protein L1P OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rpl1p PE=3 SV=1	Back alignment and function description

>sp\|Q8TZJ9\|RL1_PYRFU 50S ribosomal protein L1P OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl1p PE=1 SV=1	Back alignment and function description

>sp\|P53028\|RL10A_TRYBR 60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		413
297817178		422	hypothetical protein ARALYDRAFT_486318 [	0.748	0.732	0.573	1e-103
15231102		446	ribosomal protein L1p/L10e family protei	0.740	0.686	0.572	1e-101
224134893		384	predicted protein [Populus trichocarpa]	0.813	0.875	0.553	1e-98
449452340		364	PREDICTED: ribosomal L1 domain-containin	0.694	0.788	0.573	3e-90
449495830		364	PREDICTED: LOW QUALITY PROTEIN: ribosoma	0.694	0.788	0.573	3e-90
297824231		372	hypothetical protein ARALYDRAFT_903637 [	0.719	0.798	0.554	2e-89
356528716		407	PREDICTED: ribosomal L1 domain-containin	0.719	0.729	0.522	5e-88
15227974		372	Ribosomal protein .1/L10e family [Arabid	0.711	0.790	0.527	4e-87
21805739		372	hypothetical protein [Arabidopsis thalia	0.711	0.790	0.527	6e-87
19310375		372	At2g42650/F14N22.8 [Arabidopsis thaliana	0.711	0.790	0.524	6e-87

>gi\|297817178\|ref\|XP_002876472.1\| hypothetical protein ARALYDRAFT_486318 [Arabidopsis lyrata subsp. lyrata] gi\|297322310\|gb\|EFH52731.1\| hypothetical protein ARALYDRAFT_486318 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/335 (57%), Positives = 245/335 (73%), Gaps = 26/335 (7%)

Query: 1   MVTTVAPPLS-------LPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFV 53
           M T V+PP         +P S  SRVSP TV  A+  L KW    S+T+KPQLLEQD+ V
Sbjct: 1   MTTAVSPPPQEQTEQQLVPASQTSRVSPYTVGSALNGLTKWRSEKSKTEKPQLLEQDELV 60

Query: 54  YLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKN 113
           YLI +LKKIPQ SRTNA++IPLPH L+ N +++ PE+CLI+DDRPKS LTK  VMKKIK+
Sbjct: 61  YLIASLKKIPQTSRTNAYRIPLPHPLI-NPTEDSPELCLIIDDRPKSGLTKADVMKKIKS 119

Query: 114 DNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPV 173
           +N+PITKVIK++KLKTDY+ FEAKRKLCDSYD+F AD+R++PLLP+++GK FF  KKIPV
Sbjct: 120 ENIPITKVIKLSKLKTDYKAFEAKRKLCDSYDMFFADRRIIPLLPRVIGKKFFTSKKIPV 179

Query: 174 PVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLL---- 229
            +DLKH+NWK+QIEK CGSA+ ++RTGTCSV+KVGK+SM   +I ENV+A +NG++    
Sbjct: 180 AIDLKHKNWKQQIEKACGSAMFFIRTGTCSVIKVGKLSMELNEIIENVMATLNGVVELLP 239

Query: 230 --------------ESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGS 275
                         ESLALP+YQ+VPDLKLKI+     +   +++   +  A D  +   
Sbjct: 240 NKWKYVRSLHLKLSESLALPIYQSVPDLKLKIDAFATGKSVVKEEKEGEVEAADGGEKSV 299

Query: 276 KKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDD 310
             K KKKKGRIHEVRYMDS + EVLDEDE+G D+D
Sbjct: 300 TGKGKKKKGRIHEVRYMDSNVAEVLDEDEIGGDED 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|15231102\|ref\|NP_191425.1\| ribosomal protein L1p/L10e family protein [Arabidopsis thaliana] gi\|7630061\|emb\|CAB88283.1\| putative protein [Arabidopsis thaliana] gi\|17979349\|gb\|AAL49900.1\| unknown protein [Arabidopsis thaliana] gi\|332646291\|gb\|AEE79812.1\| ribosomal protein L1p/L10e family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224134893\|ref\|XP_002321931.1\| predicted protein [Populus trichocarpa] gi\|222868927\|gb\|EEF06058.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449452340\|ref\|XP_004143917.1\| PREDICTED: ribosomal L1 domain-containing protein 1-like isoform 1 [Cucumis sativus] gi\|449452342\|ref\|XP_004143918.1\| PREDICTED: ribosomal L1 domain-containing protein 1-like isoform 2 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449495830\|ref\|XP_004159957.1\| PREDICTED: LOW QUALITY PROTEIN: ribosomal L1 domain-containing protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297824231\|ref\|XP_002879998.1\| hypothetical protein ARALYDRAFT_903637 [Arabidopsis lyrata subsp. lyrata] gi\|297325837\|gb\|EFH56257.1\| hypothetical protein ARALYDRAFT_903637 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356528716\|ref\|XP_003532945.1\| PREDICTED: ribosomal L1 domain-containing protein 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|15227974\|ref\|NP_181793.1\| Ribosomal protein .1/L10e family [Arabidopsis thaliana] gi\|20198075\|gb\|AAM15385.1\| hypothetical protein [Arabidopsis thaliana] gi\|61742675\|gb\|AAX55158.1\| hypothetical protein At2g42650 [Arabidopsis thaliana] gi\|330255057\|gb\|AEC10151.1\| Ribosomal protein .1/L10e family [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|21805739\|gb\|AAM76766.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|19310375\|gb\|AAL84927.1\| At2g42650/F14N22.8 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		413
TAIR\|locus:2098979		446	AT3G58660 [Arabidopsis thalian	0.554	0.513	0.536	4.1e-75
TAIR\|locus:2041554		372	AT2G42650 [Arabidopsis thalian	0.670	0.744	0.444	6.4e-60
TAIR\|locus:2202260		254	AT1G06380 [Arabidopsis thalian	0.532	0.866	0.433	7.7e-48
UNIPROTKB\|F1N8V1		430	RSL1D1 "Uncharacterized protei	0.489	0.469	0.280	7.2e-21
UNIPROTKB\|J3QSV6		430	RSL1D1 "Ribosomal L1 domain-co	0.537	0.516	0.289	1.4e-18
UNIPROTKB\|O76021		490	RSL1D1 "Ribosomal L1 domain-co	0.539	0.455	0.285	1.2e-17
UNIPROTKB\|I3LG73		487	RSL1D1 "Uncharacterized protei	0.532	0.451	0.273	4.5e-14
UNIPROTKB\|Q1PG84		465	Rsl1d1 "PBK1" [Mus musculus do	0.525	0.466	0.258	2.8e-13
UNIPROTKB\|A4FV97		482	RSL1D1 "Ribosomal L1 domain-co	0.539	0.462	0.251	3.1e-13
UNIPROTKB\|E2R7S5		490	RSL1D1 "Uncharacterized protei	0.520	0.438	0.277	3.2e-13

TAIR\|locus:2098979 AT3G58660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 635 (228.6 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 124/231 (53%), Positives = 159/231 (68%)

Query:    17 SRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLP 76
             SRVSPKTVE A+  L+ W    S+T+KPQLLE+D+ VYL +TLKKIPQ +RTNA++IPLP
Sbjct:    22 SRVSPKTVESALNGLINWRSDKSKTEKPQLLEEDELVYLFVTLKKIPQKTRTNAYRIPLP 81

Query:    77 HSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFEA 136
             H L+ N + + PEICLI+DDRPKS LTKD  MKKIK++N+P            DY+ FEA
Sbjct:    82 HPLI-NPTVDSPEICLIIDDRPKSGLTKDDAMKKIKSENIPITKVIKLSKLKSDYKAFEA 140

Query:   137 KRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLY 196
             KRKLCDSYD+F  D+R++                    +DLKH+NWK QIEK CGSA+ +
Sbjct:   141 KRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFF 200

Query:   197 LRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKI 247
             +RTGTCSV+KVGK+SM   +I ENV+A +NGL+E L    +  V  L LK+
Sbjct:   201 IRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNK-WTYVRSLHLKL 250

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR\|locus:2041554 AT2G42650 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202260 AT1G06380 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8V1 RSL1D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|J3QSV6 RSL1D1 "Ribosomal L1 domain-containing protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|O76021 RSL1D1 "Ribosomal L1 domain-containing protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LG73 RSL1D1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q1PG84 Rsl1d1 "PBK1" [Mus musculus domesticus (taxid:10092)]	Back alignment and assigned GO terms

UNIPROTKB\|A4FV97 RSL1D1 "Ribosomal L1 domain-containing protein 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R7S5 RSL1D1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		413
pfam00687		200	pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10	2e-40
cd00403		208	cd00403, Ribosomal_L1, Ribosomal protein L1	1e-33
PTZ00029		216	PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr	2e-07
PTZ00225		214	PTZ00225, PTZ00225, 60S ribosomal protein L10a; Pr	4e-06
PRK04203		215	PRK04203, rpl1P, 50S ribosomal protein L1P; Review	3e-04
TIGR00844		810	TIGR00844, c_cpa1, na(+)/h(+) antiporter	0.001
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.004

>gnl\|CDD\|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family	Back alignment and domain information

 Score =  142 bits (360), Expect = 2e-40
 Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 18/188 (9%)

Query: 48  EQDDFVYLILTLKKIPQVSRTN-AFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDA 106
           + D+ V L + LKK P+    N    + LPH L         ++C+I  D          
Sbjct: 11  KFDETVELQINLKKDPRKKDQNVRGTVVLPHGL-----GKDVKVCVIAKDP--------- 56

Query: 107 VMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFF 166
              K K        V+    LK  Y   +  RKL   +D+FLAD  ++PLLPKLLGK   
Sbjct: 57  -EAKAKEAKDAGADVVGGEDLKEKY-KIKKGRKLAKDFDVFLADPDIMPLLPKLLGKVLG 114

Query: 167 KKKKIPVPVDLKHQNWKEQIEKVCGSALLYLR-TGTCSVLKVGKVSMGAEDIAENVIAAI 225
            + K+P P      +  + IE+     + + +  G C  +KVGKVSM  E++ EN+ A I
Sbjct: 115 PRGKMPNPKTTVTPDVAKAIEEAKSGTVEFRKDKGGCIHVKVGKVSMSPEELVENIEAVI 174

Query: 226 NGLLESLA 233
           N L++ L 
Sbjct: 175 NALVKKLP 182

This family includes prokaryotic L1 and eukaryotic L10. Length = 200

>gnl\|CDD\|238235 cd00403, Ribosomal_L1, Ribosomal protein L1	Back alignment and domain information

>gnl\|CDD\|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional	Back alignment and domain information

>gnl\|CDD\|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional	Back alignment and domain information

>gnl\|CDD\|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed	Back alignment and domain information

>gnl\|CDD\|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		413
KOG1685		343	consensus Uncharacterized conserved protein [Funct	100.0
PTZ00029		216	60S ribosomal protein L10a; Provisional	100.0
PTZ00225		214	60S ribosomal protein L10a; Provisional	100.0
PRK04203		215	rpl1P 50S ribosomal protein L1P; Reviewed	100.0
PF00687		220	Ribosomal_L1: Ribosomal protein L1p/L10e family; I	100.0
cd00403		208	Ribosomal_L1 Ribosomal protein L1. The L1 protein,	100.0
CHL00129		229	rpl1 ribosomal protein L1; Reviewed	99.96
COG0081		228	RplA Ribosomal protein L1 [Translation, ribosomal	99.96
PRK05424		230	rplA 50S ribosomal protein L1; Validated	99.96
TIGR01169		227	rplA_bact ribosomal protein L1, bacterial/chloropl	99.96
KOG1570		218	consensus 60S ribosomal protein L10A [Translation,	99.93
TIGR01170		141	rplA_mito ribosomal protein L1, mitochondrial. Thi	99.67
KOG1569		323	consensus 50S ribosomal protein L1 [Translation, r	99.65
PF13003		133	MRL1: Ribosomal protein L1; InterPro: IPR024663 Th	88.76

>KOG1685 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=2.8e-48  Score=385.65  Aligned_cols=302  Identities=42%  Similarity=0.588  Sum_probs=254.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCCCcceeeeEeCCCCCCCCCCC--CC
Q 015100           10 SLPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSD--NP   87 (413)
Q Consensus        10 ~~~~~~~s~Vd~eqV~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k~r~~p~~I~LPHpl~~~~~~--~~   87 (413)
                      ..++.+++++++..+..|++++.++.........+++++++..+|.....++++.....+...|++||++..+. .  .+
T Consensus        10 ~~~~~~~~~v~~~~~e~~~k~~~~~~~~~~k~~~~~~~~~~k~~~~~~~~k~~~~~~~~n~~~IP~k~~~~~~~-~~~~~   88 (343)
T KOG1685|consen   10 SSTAIPRESVSPKNVESAVKALDKEREKKSKAENPQLLEALKNVYKVVLQKNTPQKVGTNKLKIPLKHLLKKLL-LKHDD   88 (343)
T ss_pred             ccccccccccCchhhhHHHhhhhhhhHHHHHhhhhhhhhhhhhhHHHHHHHhcccccccccccccCcchhcccc-cCCCC
Confidence            35667888999999999999999988776554457788877777777777677776666777888999887664 2  37


Q ss_pred             CEEEEEecCCCCCchhHHHHHHhhhcCCCC-cceeeechhHHhhcccHHHHHhhhhccCEEEEcCCchhhhhhhhccccc
Q 015100           88 PEICLIMDDRPKSNLTKDAVMKKIKNDNLP-ITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFF  166 (413)
Q Consensus        88 ~kICLIvkD~~~~~~t~~~ake~L~~~gi~-i~kVI~lkkLkkeyKsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~  166 (413)
                      .+||||++|+++.++|+++|+++|.++|++ +++||++++|+.+|++||++|+|+++||+||||+||+|+||++|||.||
T Consensus        89 ~~vcLIvkD~~~~~~t~~~~~d~l~~~gi~~itkVI~~~~LK~~yksyeaKr~L~~sfDlflaD~RV~~~LP~llGK~f~  168 (343)
T KOG1685|consen   89 TDVCLIVKDLQQSYLTEEDAEDLLESEGIKSITKVISLSKLKRDYKSYEAKRKLLSSFDLFLADDRVIPLLPKLLGKEFY  168 (343)
T ss_pred             CceEEEecCchhccccHHHHHHHHHHcCCccceeeeehHHHHHHHHHHHHHHHHHhhccEEEEcchhHhHHHHHhhhhhc
Confidence            899999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCccc--HHHHHHHHHcccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHH---------------
Q 015100          167 KKKKIPVPVDLKHQN--WKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLL---------------  229 (413)
Q Consensus       167 kkkK~PipV~l~~~d--Lk~~Ieka~~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~---------------  229 (413)
                      ++++.|+||++.+.+  |..+|++||++|+|+++.|+|++|+|||++|+.++|+|||.++++.+.               
T Consensus       169 q~kk~Pv~i~l~k~~~~l~~qi~~a~~~t~~~~~~g~~~~i~vg~l~~~~~~l~ENv~~vlk~l~e~~P~~~~~Irsl~l  248 (343)
T KOG1685|consen  169 QKKKVPVSIRLSKKNELLKQQIENACGSTYFRLRKGTSSAIKVGHLGNTSEELAENVVAVLKGLSEILPGGWKNIRSLHL  248 (343)
T ss_pred             ccccCceEEEecccchHHHHHHHHHhhhheeeccCCceeEEEeccccccHHHHHHHHHHHHHHHHHHccchHhHhHHHhh
Confidence            999999999998767  999999999999999999999999999999999999999999999963               


Q ss_pred             ---hhccCCCeeecCcceeeeccccCCCCCCccc--cccccccccccc--ccchhhhcccccceeEEEeecCcccccccc
Q 015100          230 ---ESLALPVYQAVPDLKLKIEGVKENEGEGQDK--DSEKENAEDVND--HGSKKKLKKKKGRIHEVRYMDSTIGEVLDE  302 (413)
Q Consensus       230 ---~SlaLPiYqni~~v~iKi~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~  302 (413)
                         +|++||+|++...+...+..++...+-.+..  .+..++.+.+..  ....++.+.++|+||+++|||++..|.+|.
T Consensus       249 Kt~~s~aLPly~s~~~~~~~~~~~~~i~~~~~~k~~~~~~~k~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~e~~~~  328 (343)
T KOG1685|consen  249 KTSRSPALPLYVSVISLKEIASKRGSIRDFVELKETQKKERKSDLSLFGKGKKEIKIKVKKGSIDSKQQNDSNKAEVLDL  328 (343)
T ss_pred             hccCCcccceeecccchhhhhcccCchhhhhHHHhhhhhhhhccccccchhhhHhhhhhhccchhhHHhccchhhhhccc
Confidence               4899999999998888888776544322221  222333333322  233346677889999999999999999999


Q ss_pred             cccCCCCCCC
Q 015100          303 DELGSDDDGE  312 (413)
Q Consensus       303 ~~~~~~~~~~  312 (413)
                      |+...|.|.+
T Consensus       329 d~~~~~~d~~  338 (343)
T KOG1685|consen  329 DEEKKDSDAN  338 (343)
T ss_pred             ccccccccch
Confidence            9998865543

>PTZ00029 60S ribosomal protein L10a; Provisional	Back alignment and domain information

>PTZ00225 60S ribosomal protein L10a; Provisional	Back alignment and domain information

>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed	Back alignment and domain information

>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>cd00403 Ribosomal_L1 Ribosomal protein L1	Back alignment and domain information

>CHL00129 rpl1 ribosomal protein L1; Reviewed	Back alignment and domain information

>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05424 rplA 50S ribosomal protein L1; Validated	Back alignment and domain information

>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast	Back alignment and domain information

>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial	Back alignment and domain information

>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		413
3o58_A		217	L10A, 60S ribosomal protein L1; ribosomal RNA and	2e-07
3iz5_A		216	60S ribosomal protein L1 (L1P); eukaryotic ribosom	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1mzp_A		217	50S ribosomal protein L1P; ribosome, RNA-protein c	9e-05
2zkr_5		212	60S ribosomal protein L10A; protein-RNA complex, 6	1e-04
1i2a_A		219	50S ribosomal protein L1P; primary rRNA-binding pr	5e-04

>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Length = 217	Back alignment and structure

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 127 LKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQI 186
           LK   +  +  +KL   Y+ F+A + ++  +P+LLG    K  K P PV     +   ++
Sbjct: 90  LKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHN-DDLYGKV 148

Query: 187 EKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESL 232
             V  +    L+   C  + VG V M  + +   ++ ++N  +  L
Sbjct: 149 TDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLL 194

PyMOL of 3o58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217	Back alignment and structure

>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212	Back alignment and structure

>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		413
1mzp_A		217	50S ribosomal protein L1P; ribosome, RNA-protein c	100.0
2zkr_5		212	60S ribosomal protein L10A; protein-RNA complex, 6	100.0
1i2a_A		219	50S ribosomal protein L1P; primary rRNA-binding pr	100.0
3j21_A		216	50S ribosomal protein L1P; archaea, archaeal, KINK	100.0
3o58_A		217	L10A, 60S ribosomal protein L1; ribosomal RNA and	100.0
3iz5_A		216	60S ribosomal protein L1 (L1P); eukaryotic ribosom	100.0
2wwq_5		234	50S ribosomal protein L1; ribosomal protein, ribon	100.0
3qoy_A		242	50S ribosomal protein L1; beta-alpha-beta, structu	100.0
3bbo_D		352	Ribosomal protein L1; large ribosomal subunit, spi	99.97
3u42_A		229	50S ribosomal protein L1; rossmann fold, rRNA bind	99.95
2ftc_A		189	Mitochondrial ribosomal protein L1; mitochondrial	99.95
2ov7_A		137	50S ribosomal protein L1; 2.30A {Thermus thermophi	99.38

>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z	Back alignment and structure

Probab=100.00  E-value=2.1e-39  Score=306.58  Aligned_cols=205  Identities=20%  Similarity=0.243  Sum_probs=178.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC-C-cceeeeEeCCCCCCCCCCCCCCEEEEEec
Q 015100           18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV-S-RTNAFKIPLPHSLLGNDSDNPPEICLIMD   95 (413)
Q Consensus        18 ~Vd~eqV~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k-~-r~~p~~I~LPHpl~~~~~~~~~kICLIvk   95 (413)
                      .|+++++++||++|++| .    ..+.+.|.|  +|+|+|+|++++++ + +..++.|.|||+++.     ..+||||++
T Consensus         2 ~v~~~~l~~Av~~ll~~-~----~~~~~kf~e--tvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k-----~~~V~Vf~~   69 (217)
T 1mzp_A            2 LADKESLIEALKLALST-E----YNVKRNFTQ--SVEIILTFKGIDMKKGDLKLREIVPLPKQPSK-----AKRVLVVPS   69 (217)
T ss_dssp             CCCHHHHHHHHHHHHST-T----TCCCCSSCC--EEEEEEEESSCCGGGTTTCCEEEEECSSCCSS-----CCCEEEECC
T ss_pred             ccCHHHHHHHHHHHHhh-c----cccccCCCc--cEEEEEEecCCCCcccccccceeecCCCCCCC-----CcEEEEEcC
Confidence            38999999999999998 2    134578987  99999999998665 5 567789999999864     789999999


Q ss_pred             CCCCCchhHHHHHHhhhcCCCCcceeeechhHHhhcc-cHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCcc
Q 015100           96 DRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYR-PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP  174 (413)
Q Consensus        96 D~~~~~~t~~~ake~L~~~gi~i~kVI~lkkLkkeyK-sfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~Pip  174 (413)
                      +++.     ++|    .+.|+  +.+++.++| ++++ .|+++|+|+.+||+|||++++|++||++||+.||+||+||+|
T Consensus        70 ~~~~-----~~A----~~aGa--d~~vg~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p  137 (217)
T 1mzp_A           70 SEQL-----EYA----KKASP--KVVITREEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTP  137 (217)
T ss_dssp             HHHH-----HHH----HHTCC--SEECCHHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEE
T ss_pred             chhH-----HHH----HhcCC--CeeeCHHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcc
Confidence            8732     344    34566  348999999 5664 478899999999999999999999999999999999999999


Q ss_pred             ccCCcccHHHHHHHHHcccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCeeecCcceeeecc
Q 015100          175 VDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEG  249 (413)
Q Consensus       175 V~l~~~dLk~~Ieka~~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiYqni~~v~iKi~~  249 (413)
                      +.+ +.||...|+++++++.|+++++.|++++||+++|+++||+|||.+++++|...+. . |+++.++|||+|.
T Consensus       138 ~~g-t~dv~~~v~~~k~~v~~r~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p-~-~~~ik~v~lksTm  209 (217)
T 1mzp_A          138 LPN-TADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAK-V-ETNLRNIYVKTTM  209 (217)
T ss_dssp             CCS-SSCCHHHHHHHHTEEEEECSSSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-C-TTTEEEEEEEETT
T ss_pred             cCC-CccHHHHHHHHhcceEEEecCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc-c-chheEEEEEECCC
Confidence            999 5899999999999999999999999999999999999999999999999955553 4 8999999999886

PyMOL of 1mzp

>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}	Back alignment and structure

>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A	Back alignment and structure

>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}	Back alignment and structure

>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A	Back alignment and structure

>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2	Back alignment and structure

>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}	Back alignment and structure

>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}	Back alignment and structure

>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...	Back alignment and structure

>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}	Back alignment and structure

>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		413
d1mzpa_		217	e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfo	5e-10
d1i2aa_		212	e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Metha	1e-07

>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 56.7 bits (136), Expect = 5e-10
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 26/221 (11%)

Query: 19  VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFK--IPLP 76
              +++  A+K       S     K    +    V +ILT K I         +  +PLP
Sbjct: 3   ADKESLIEALKLA----LSTEYNVKRNFTQS---VEIILTFKGIDMKKGDLKLREIVPLP 55

Query: 77  HSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEA 136
                    +  +  L++    +    K A  K +               L+        
Sbjct: 56  KQP------SKAKRVLVVPSSEQLEYAKKASPKVVITREE----------LQKLQGQKRP 99

Query: 137 KRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLY 196
            +KL    + FL ++  + L  ++LG     + K P P+     +  E I +   S L+ 
Sbjct: 100 VKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLP-NTADISEYINRFKRSVLVK 158

Query: 197 LRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVY 237
            +      + +G   M  ED+AEN IA +N +     +   
Sbjct: 159 TKDQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKVETN 199

PyMOL of d1mzpa_

>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		413
d1i2aa_		212	Ribosomal protein L1 {Archaeon Methanococcus janna	100.0
d1mzpa_		217	Ribosomal protein L1 {Archaeon Sulfolobus acidocal	100.0
d1ad2a_		224	Ribosomal protein L1 {Thermus thermophilus [TaxId:	99.94

>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.8e-35  Score=275.91  Aligned_cols=203  Identities=22%  Similarity=0.283  Sum_probs=177.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCCC--cceeeeEeCCCCCCCCCCCCCCEEEEEecC
Q 015100           19 VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVS--RTNAFKIPLPHSLLGNDSDNPPEICLIMDD   96 (413)
Q Consensus        19 Vd~eqV~kAVkALlk~~~k~~~~~K~~Lf~Ede~V~L~ItLKkIp~k~--r~~p~~I~LPHpl~~~~~~~~~kICLIvkD   96 (413)
                      |+++.+.+||+.++++.       +.+.|.|  +|+|+|+|++|+++.  +...+.|.|||++++     ..+||||+.+
T Consensus         1 ~~~~~~~~ai~~~~~~~-------k~rkF~e--svel~i~Lk~iD~kk~d~~irg~v~LPh~~gk-----~~kV~Vf~~~   66 (212)
T d1i2aa_           1 MDREALLQAVKEARELA-------KPRNFTQ--SFEFIATLKEIDMRKPENRIKTEVVLPHGRGK-----EAKIAVIGTG   66 (212)
T ss_dssp             CCHHHHHHHHHHHHHHS-------CCCSSCC--EEEEEEEESSCCTTSGGGCCEEEEECTTCCSS-----CCCEEEECCH
T ss_pred             CCHHHHHHHHHHHHHhC-------CccCCCc--eEEEEEecCCCCCCcccceeeeEeeCCCCCCC-----cceEEEEech
Confidence            68899999999998843       4577988  999999999997763  456678999999986     5799999986


Q ss_pred             CCCCchhHHHHHHhhhcCCCCcceeeechhHHhhcccHHHHHhhhhccCEEEEcCCchhhhhhhhcccccCCCCCCcccc
Q 015100           97 RPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVD  176 (413)
Q Consensus        97 ~~~~~~t~~~ake~L~~~gi~i~kVI~lkkLkkeyKsfEakRKL~~sYDlFLAD~rI~p~LpklLGK~F~kkkK~PipV~  176 (413)
                      ...     +.|    .+.|+   .+++...|.+.++.....++++.+||+|||++++||.|+++||+.||+|++||+|++
T Consensus        67 e~~-----~~A----k~aga---~~vg~~el~~~~~~~~~~kk~~~~~D~~iat~~~m~~l~k~lgkiLGpkglmP~p~~  134 (212)
T d1i2aa_          67 DLA-----KQA----EELGL---TVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVP  134 (212)
T ss_dssp             HHH-----HHH----HHTTC---EEECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEEC
T ss_pred             hhH-----HHh----hhccc---cccCcHHHHHHHhhhhhhhcccccCCeEEecchHHHHHHHHhhhhhhhhhccccCCc
Confidence            432     234    45676   488888888877777788999999999999999999999999999999999999998


Q ss_pred             CCcccHHHHHHHHHcccEEEccCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHhhccCCCeeecCcceeeecc
Q 015100          177 LKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGLLESLALPVYQAVPDLKLKIEG  249 (413)
Q Consensus       177 l~~~dLk~~Ieka~~st~f~l~~G~~~sVkVG~~sMs~eqIvENI~Avl~~L~~SlaLPiYqni~~v~iKi~~  249 (413)
                      .+ .+|.+.|+++++++.|+.+++.|++++||+++|+++||+|||.|+++++...+. .+|+++.++||++|.
T Consensus       135 ~t-~di~~~v~~~k~~~~~~~~~~~~i~~~IG~~~m~~e~i~eNi~a~~~~i~~~~p-kg~~~Ik~v~lssTm  205 (212)
T d1i2aa_         135 AN-ANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYE-KGLYHIKDAYVKLTM  205 (212)
T ss_dssp             TT-CCCHHHHHHHHTEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHST-TGGGGEEEEEEEETT
T ss_pred             cc-chhhHHHHHHhcceeeeecCCceEEEeeeeccCCHHHHHHHHHHHHHHHHhhCc-CCceeEEEEEEECCC
Confidence            86 689999999999999999999999999999999999999999999999966655 688899999999987

PyMOL of d1i2aa_

>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}	Back information, alignment and structure

>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure