Citrus Sinensis ID: 015150

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGalgkllepqdcvahILPVIVNFSQDKSWRVRYMVANQLYELCEavgpeptrsdvvpAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCvkelssdssQHVRSALATVIMGmapilgkdatIEQLLPIFLSLlkdefpdvRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAsqlgvgffddKLGALCMQWLKDKVYSIRDAAANNVKRLAEefgpdwamqhIVPQVLEMINNPHYLYRMTILQAISLLapvmgseitcsqllpvvinaskdrvpniKFNVAKVLQSLipivdqsvvekSIRPClvelsedpdvdvRFFATQALQSkdqvmmsg
Flexible Loop (DISEMBL)
mpmvrrsaatnlgkfAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrsdVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSlipivdqsvvEKSIRPCLVelsedpdvdvRFFATqalqskdqvmmsg
Low Complexity Region (SEG)
MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Disordered region (IsUnstruct)
************GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS*****HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFAT*************
Disordered Region (DISOPRED)
MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM**
Disordered Region (DISEMBL)
********ATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE*********RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS********
Disordered Region (DISPRO)
MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
Q38950	587	Serine/threonine-protein	yes	no	0.987	0.693	0.919	0.0
Q38951	587	Serine/threonine-protein	no	no	0.987	0.693	0.910	0.0
Q38845	588	Serine/threonine-protein	no	no	0.963	0.675	0.874	0.0
P36875	395	Protein phosphatase PP2A	N/A	no	0.956	0.997	0.886	0.0
Q54QR9	584	Serine/threonine-protein	yes	no	0.973	0.686	0.589	1e-136
Q32PI5	589	Serine/threonine-protein	yes	no	0.973	0.680	0.567	1e-131
P54612	589	Serine/threonine-protein	yes	no	0.973	0.680	0.567	1e-131
Q76MZ3	589	Serine/threonine-protein	yes	no	0.973	0.680	0.567	1e-131
P30153	589	Serine/threonine-protein	yes	no	0.973	0.680	0.567	1e-131
P54613	602	Serine/threonine-protein	no	no	0.973	0.666	0.562	1e-129

>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/412 (91%), Positives = 402/412 (97%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRR+AATNLGKFAATVE+AHLK+++MS+FE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAE
Sbjct: 236 QDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQH
Sbjct: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           IVPQVLEM+NNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVA
Sbjct: 476 IVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           KVLQSLIPIVDQSVVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 536 KVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/412 (91%), Positives = 399/412 (96%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRR+AATNLGKFAAT+E+AHLK++IMS+FE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAY RLL DNEAE
Sbjct: 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFD+KLGALCMQWL+DKV+SIR+AAANN+KRLAEEFGP+WAMQH
Sbjct: 416 AIIEYIPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           IVPQVLEMINNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVA
Sbjct: 476 IVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           K++QSLIPIVDQ+VVE  IRPCLVELSEDPDVDVR+FA QALQS D VMMS 
Sbjct: 536 KMMQSLIPIVDQAVVENMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/406 (87%), Positives = 390/406 (96%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRR+AA+NLGKFA TVE+  L +EIM++F++LT+DDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCVA ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR+D+VPAYVRLLRDNEAE
Sbjct: 236 QDCVARILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CR+LNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAPILGKD+T
Sbjct: 296 VRIAAAGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDST 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEY+PLLASQLG+GFFDDKLGALCMQWL+DKVYSIR+AAANN+KRLAEEFGP+WAMQH
Sbjct: 416 AIIEYVPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           +VPQVL+M+NNPHYL+RM +L+AISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVA
Sbjct: 476 LVPQVLDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406
           K+LQSLIPIVDQSVV+K+IR CLV+LSEDPDVDVR+FA QAL S D
Sbjct: 536 KLLQSLIPIVDQSVVDKTIRQCLVDLSEDPDVDVRYFANQALNSID 581

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/395 (88%), Positives = 378/395 (95%), Gaps = 1/395 (0%)

Query: 19  VEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK 78
           VEAAHLK++IMS+F++LTQDDQDS R LAVEGC ALGKLLEPQDC+AHILPVIVNFSQDK
Sbjct: 1   VEAAHLKTDIMSVFDDLTQDDQDSFRFLAVEGCAALGKLLEPQDCLAHILPVIVNFSQDK 60

Query: 79  SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 138
           SWRVRYMVANQLYELCEAVGP+ T++++VPAYVRLLRDN AEVRIAAAGKV+K  RIL+P
Sbjct: 61  SWRVRYMVANQLYELCEAVGPDSTKTELVPAYVRLLRDNVAEVRIAAAGKVSKFSRILSP 120

Query: 139 ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD 198
           ELAIQHILPCVKELS+DSSQHVRSALA+VIMGMAP+LGKDATIEQLLPIFLSLLKDEFPD
Sbjct: 121 ELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPD 180

Query: 199 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 258
           VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF
Sbjct: 181 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 240

Query: 259 DDKLGALCMQWLKDKVYSIRDAAANNVKRL-AEEFGPDWAMQHIVPQVLEMINNPHYLYR 317
           DDKLGAL MQWLKDK YSIR+AAANNVKRL AEEFGP+WAMQHI+PQVL+MIN+PHYLYR
Sbjct: 241 DDKLGALIMQWLKDKEYSIRNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYLYR 300

Query: 318 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEK 377
           MTIL AISLLAPV+GSEIT + LLP+V+NASKDRVPNIKFNVAKVLQSLIPIVD+SVVE 
Sbjct: 301 MTILHAISLLAPVLGSEITSTNLLPLVVNASKDRVPNIKFNVAKVLQSLIPIVDESVVES 360

Query: 378 SIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           +IRPCLVELSEDPDVDVRFFA+QALQS DQV MS 
Sbjct: 361 TIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 395

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Pisum sativum (taxid: 3888)

>sp|Q54QR9|2AAA_DICDI Serine/threonine-protein phosphatase 2A regulatory subunit pppA OS=Dictyostelium discoideum GN=pppA PE=2 SV=1

 Score =  485 bits (1249), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/402 (58%), Positives = 315/402 (78%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMV+R+AATNLG FA  +E   +KSEI+ +F+ L+ D+QDSVRLL VE C  LG +L  +
Sbjct: 181 PMVKRAAATNLGSFAKQIEKESVKSEILPLFQSLSTDEQDSVRLLGVENCALLGSMLTNE 240

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           + +  ILP I   S DKSWRVRYMVA  L ELCE++G E T+++++ A+V+LL+D EAEV
Sbjct: 241 ENIQFILPTIKASSLDKSWRVRYMVARLLKELCESMGTEITKTELIGAFVKLLKDTEAEV 300

Query: 122 RIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 181
           R  A+ ++  +C +L  E+ I+ ILPCVK+L SDSSQHVR+ALA VIM +API GK+ T+
Sbjct: 301 RTEASLRIADVCSLLTKEMNIKTILPCVKDLVSDSSQHVRAALAQVIMSLAPIYGKEDTL 360

Query: 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 241
             LL +FL LLKD+FPDVRLNIISKLDQV++VIGI++LSQSLLPAIVELAED  WRVRLA
Sbjct: 361 THLLELFLHLLKDDFPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLA 420

Query: 242 IIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 301
           II+YIPLLASQLGV FFD+KLG LCM WL D V+SIR+AA NN+K+L E FG DWA  +I
Sbjct: 421 IIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNI 480

Query: 302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK 361
           +P+VL + ++P+YLYRMT L +IS L+ V+G ++  S ++P++     D+VPNI+FNVAK
Sbjct: 481 IPKVLSLHSHPNYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNVAK 540

Query: 362 VLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 403
             Q++IP++D ++V+  ++P LV+L ED D DV+F+A+QALQ
Sbjct: 541 TFQTIIPLLDSTIVQSRVKPLLVKLHEDTDKDVKFYASQALQ 582

Scaffolding molecule which may coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Dictyostelium discoideum (taxid: 44689)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  469 bits (1207), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 310/405 (76%), Gaps = 4/405 (0%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D+TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 359 DSTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 539 NVAKSLQKIGPILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  461 bits (1187), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/405 (56%), Positives = 306/405 (75%), Gaps = 4/405 (0%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E   +KSEI+ +F  L  D+QDSVRLLAVE C ++ +LL   
Sbjct: 192 PMVRRAAASKLGEFAKVLELDSVKSEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQD 251

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL  AVGP+ T +D++PA+  LL+D EAEV
Sbjct: 252 DLEALVMPTLRQAAEDKSWRVRYMVADKFSELQRAVGPKITLNDLIPAFQNLLKDCEAEV 311

Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AAA KV ++C  L  E    + +  ILPC+KEL SD++QHV+SALA+VIMG++ ILGK
Sbjct: 312 RAAAAHKVKELCENLPIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGK 371

Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           + TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 372 ENTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 431

Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NN+ +L ++FG +WA
Sbjct: 432 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWA 491

Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              IVP+VL M N+P+YL+RMT L  I++L+   G EIT  Q+LP+V+  + D+V N++F
Sbjct: 492 QNTIVPKVLVMANDPNYLHRMTTLFCINVLSEACGQEITTKQMLPIVLKMAGDQVANVRF 551

Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D   +++ ++P L +L +D D+DV++FA +A+
Sbjct: 552 NVAKSLQKIGPILDTDALQEEVKPVLQKLGQDEDMDVKYFAQEAI 596

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
224115920	587	predicted protein [Populus trichocarpa]	0.905	0.635	0.946	0.0
225455902	587	PREDICTED: serine/threonine-protein phos	0.987	0.693	0.941	0.0
297734191	642	unnamed protein product [Vitis vinifera]	0.987	0.633	0.941	0.0
255541788	587	serine/threonine protein phosphatase 2a	0.810	0.568	0.939	0.0
255576493	587	serine/threonine protein phosphatase 2a	0.987	0.693	0.929	0.0
356520585	587	PREDICTED: serine/threonine-protein phos	0.907	0.637	0.927	0.0
15230896	587	protein phosphatase 2A subunit A2 [Arabi	0.987	0.693	0.919	0.0
343172122	576	protein phosphatase 2A subunit A2, parti	0.905	0.647	0.919	0.0
297818092	587	hypothetical protein ARALYDRAFT_904748 [	0.907	0.637	0.919	0.0
449434642	587	PREDICTED: serine/threonine-protein phos	0.987	0.693	0.922	0.0

>gi|224115920|ref|XP_002332045.1| predicted protein [Populus trichocarpa] gi|222875342|gb|EEF12473.1| predicted protein [Populus trichocarpa]

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/411 (94%), Positives = 404/411 (98%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRRSAATNLGKFAATVE  HLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRSAATNLGKFAATVEPVHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAE
Sbjct: 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRILNPE+AIQHILPCVK+LS+DSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFCRILNPEVAIQHILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH
Sbjct: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           IVPQVL++INNPHYLYRMTIL A+SLL+PVMGSEITCSQLLP+VINASKDRVPNIKFNVA
Sbjct: 476 IVPQVLDLINNPHYLYRMTILHAVSLLSPVMGSEITCSQLLPIVINASKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411
           KVLQSLIPIVDQSVVEK+IRPCLVELSEDPDVDVRFFATQALQS D VMMS
Sbjct: 536 KVLQSLIPIVDQSVVEKTIRPCLVELSEDPDVDVRFFATQALQSSDHVMMS 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455902|ref|XP_002276180.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Vitis vinifera]

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/412 (94%), Positives = 405/412 (98%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRRSAA+NLGKFAATVEAAHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAE
Sbjct: 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           I+QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IDQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH
Sbjct: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           I+PQVL+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVA
Sbjct: 476 IIPQVLDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           KVLQSL PIVDQSVV+K+IRPCLVELSEDPDVDVRFFA+QALQ+ DQ+MMS 
Sbjct: 536 KVLQSLTPIVDQSVVDKTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734191|emb|CBI15438.3| unnamed protein product [Vitis vinifera]

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/412 (94%), Positives = 405/412 (98%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRRSAA+NLGKFAATVEAAHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 231 MPMVRRSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 290

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAE
Sbjct: 291 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAE 350

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 351 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 410

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           I+QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 411 IDQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 470

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH
Sbjct: 471 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 530

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           I+PQVL+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVA
Sbjct: 531 IIPQVLDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVA 590

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           KVLQSL PIVDQSVV+K+IRPCLVELSEDPDVDVRFFA+QALQ+ DQ+MMS 
Sbjct: 591 KVLQSLTPIVDQSVVDKTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541788|ref|XP_002511958.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223549138|gb|EEF50627.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/412 (93%), Positives = 399/412 (96%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRRSAATNLGKFAATVE AHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRSAATNLGKFAATVEPAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCVAHILPVI NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLL DNEAE
Sbjct: 236 QDCVAHILPVIANFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLCDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRILNPELAIQ ILPCVK+LS+DSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFCRILNPELAIQRILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH
Sbjct: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           IVPQVL+MINNPHYLYRMTIL AISLLAPV+GSEITCS LLPVV+ ASKDRVPNIKFNVA
Sbjct: 476 IVPQVLDMINNPHYLYRMTILHAISLLAPVVGSEITCSSLLPVVVTASKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           KVLQ LIPIVD SVVEK+IRPCLVELSEDPDVDVRFFATQALQS DQVMMS 
Sbjct: 536 KVLQLLIPIVDHSVVEKTIRPCLVELSEDPDVDVRFFATQALQSSDQVMMSS 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/412 (92%), Positives = 400/412 (97%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRRSAA+NLGKFAATVE AHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAYVRLLRDNEAE
Sbjct: 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAM+H
Sbjct: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMRH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           I+PQVLEM+ NPHYLYRMTIL+AISLLAPVMGSEITCS+LLPVV  ASKDRVPNIKFNVA
Sbjct: 476 IIPQVLEMVTNPHYLYRMTILRAISLLAPVMGSEITCSKLLPVVATASKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           KVLQSLI IVDQSVVEK+IRPCL ELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 536 KVLQSLISIVDQSVVEKTIRPCLAELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520585|ref|XP_003528942.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max]

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/412 (92%), Positives = 402/412 (97%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRRSAATNLGKFAATVEA HLKS+IMS+FE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRSAATNLGKFAATVEAPHLKSDIMSVFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+PTRS++VPAYVRLLRDNEAE
Sbjct: 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRSELVPAYVRLLRDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK  RILNP+LAIQHILPCVKELS+DSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFSRILNPDLAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN+KRLAEEFGPDWAMQH
Sbjct: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNIKRLAEEFGPDWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           I+PQVL+M+ +PHYLYRMTILQAISLLAPV+GSEIT S+LLP+VINASKDRVPNIKFNVA
Sbjct: 476 IIPQVLDMVTDPHYLYRMTILQAISLLAPVLGSEITSSKLLPLVINASKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           KVLQSLIPIVDQSVVE +IRPCLVELSEDPDVDVRFFA+QALQS DQV MS 
Sbjct: 536 KVLQSLIPIVDQSVVESTIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 587

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230896|ref|NP_189208.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|83287930|sp|Q38950.2|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd regulatory subunit [Arabidopsis thaliana] gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana] gi|30725386|gb|AAP37715.1| At3g25800 [Arabidopsis thaliana] gi|332643548|gb|AEE77069.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/412 (91%), Positives = 402/412 (97%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRR+AATNLGKFAATVE+AHLK+++MS+FE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAE
Sbjct: 236 QDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQH
Sbjct: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           IVPQVLEM+NNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVA
Sbjct: 476 IVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           KVLQSLIPIVDQSVVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 536 KVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172122|gb|AEL98765.1| protein phosphatase 2A subunit A2, partial [Silene latifolia]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/411 (91%), Positives = 400/411 (97%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRRSAATNLGKFAATVE  HLK+++M +FE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 166 MPMVRRSAATNLGKFAATVEPNHLKTDVMGMFEDLTQDDQDSVRLLAVEGCAALGKLLEP 225

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCVAH+LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+PTR+D+VPAYVRLLRDNEAE
Sbjct: 226 QDCVAHVLPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRADLVPAYVRLLRDNEAE 285

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRIL+PELAIQHILPCVK+LSSDSSQHVRSALA+VIMGMAPILGKDAT
Sbjct: 286 VRIAAAGKVTKFCRILSPELAIQHILPCVKDLSSDSSQHVRSALASVIMGMAPILGKDAT 345

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 346 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 405

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLL SQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANNVKRLAEEFGP+WAMQH
Sbjct: 406 AIIEYIPLLGSQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNVKRLAEEFGPEWAMQH 465

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           IVPQVLEM+NNPHYLYRMTIL AISLLAPV+GSEITCS+LLPV++NASKDRVPNIKFNVA
Sbjct: 466 IVPQVLEMMNNPHYLYRMTILHAISLLAPVLGSEITCSKLLPVLVNASKDRVPNIKFNVA 525

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411
           KVLQS+IPIVDQ+VVEK+IRPCLVEL EDPDVDVRFFA QALQS D VMMS
Sbjct: 526 KVLQSIIPIVDQTVVEKTIRPCLVELGEDPDVDVRFFANQALQSIDNVMMS 576

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818092|ref|XP_002876929.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata] gi|297322767|gb|EFH53188.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/412 (91%), Positives = 402/412 (97%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRR+AATNLGKFAAT+E+AHLK++IMS+F++LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRAAATNLGKFAATIESAHLKTDIMSMFDDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAE
Sbjct: 236 QDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQH
Sbjct: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           IVPQVLEMINNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVA
Sbjct: 476 IVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           KVLQSLIPIVDQSVVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 536 KVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/412 (92%), Positives = 402/412 (97%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
           MPMVRRSAATNLGKFAAT+E AHLK++IM+IFE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct: 176 MPMVRRSAATNLGKFAATIEPAHLKTDIMTIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           QDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAYVRLLRDNEAE
Sbjct: 236 QDCVLHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAE 295

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VRIAAAGKVTK CRIL+PELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct: 296 VRIAAAGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 355

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
           IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct: 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query: 241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
           AIIEYIPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQH
Sbjct: 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH 475

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
           IVPQVL+MINNPHYLYRMT+L+A+SLLAPVMGSEITC++LLPVVI++SKDRVPNIKFNVA
Sbjct: 476 IVPQVLDMINNPHYLYRMTVLRAVSLLAPVMGSEITCTKLLPVVISSSKDRVPNIKFNVA 535

Query: 361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 412
           KVLQSLIPIVDQ VVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 536 KVLQSLIPIVDQPVVEKTIRPSLVELSEDPDVDVRFFANQALQSIDHVMMSS 587

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2085994	587	PP2AA2 "protein phosphatase 2A	0.997	0.700	0.922	1.5e-200
TAIR|locus:2205354	587	PP2AA3 "AT1G13320" [Arabidopsi	0.997	0.700	0.912	5.9e-199
TAIR|locus:2031165	588	RCN1 "AT1G25490" [Arabidopsis	0.985	0.690	0.874	7.7e-190
DICTYBASE|DDB_G0283601	584	pppA "protein phosphatase 2A s	0.975	0.688	0.589	6.1e-126
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.973	0.680	0.567	2.6e-118
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.973	0.680	0.567	2.6e-118
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.973	0.680	0.567	4.2e-118
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.973	0.680	0.567	5.4e-118
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.973	0.680	0.567	5.4e-118
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.973	0.680	0.567	5.4e-118

TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1941 (688.3 bits), Expect = 1.5e-200, P = 1.5e-200
 Identities = 379/411 (92%), Positives = 402/411 (97%)

Query:     1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
             MPMVRR+AATNLGKFAATVE+AHLK+++MS+FE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct:   176 MPMVRRAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query:    61 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
             QDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAE
Sbjct:   236 QDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAE 295

Query:   121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
             VRIAAAGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct:   296 VRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 355

Query:   181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
             IE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct:   356 IEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query:   241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
             AIIEYIPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQH
Sbjct:   416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQH 475

Query:   301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
             IVPQVLEM+NNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVA
Sbjct:   476 IVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVA 535

Query:   361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411
             KVLQSLIPIVDQSVVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS
Sbjct:   536 KVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMS 586

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1926 (683.0 bits), Expect = 5.9e-199, P = 5.9e-199
 Identities = 375/411 (91%), Positives = 399/411 (97%)

Query:     1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
             MPMVRR+AATNLGKFAAT+E+AHLK++IMS+FE+LTQDDQDSVRLLAVEGC ALGKLLEP
Sbjct:   176 MPMVRRAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235

Query:    61 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
             QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAY RLL DNEAE
Sbjct:   236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAE 295

Query:   121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
             VRIAAAGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDAT
Sbjct:   296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDAT 355

Query:   181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
             IE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct:   356 IEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query:   241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
             AIIEYIPLLASQLGVGFFD+KLGALCMQWL+DKV+SIR+AAANN+KRLAEEFGP+WAMQH
Sbjct:   416 AIIEYIPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQH 475

Query:   301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
             IVPQVLEMINNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVA
Sbjct:   476 IVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVA 535

Query:   361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411
             K++QSLIPIVDQ+VVE  IRPCLVELSEDPDVDVR+FA QALQS D VMMS
Sbjct:   536 KMMQSLIPIVDQAVVENMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMS 586

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 1840 (652.8 bits), Expect = 7.7e-190, P = 7.7e-190
 Identities = 355/406 (87%), Positives = 390/406 (96%)

Query:     1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
             MPMVRR+AA+NLGKFA TVE+  L +EIM++F++LT+DDQDSVRLLAVEGC ALGKLLEP
Sbjct:   176 MPMVRRAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEP 235

Query:    61 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
             QDCVA ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR+D+VPAYVRLLRDNEAE
Sbjct:   236 QDCVARILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAE 295

Query:   121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
             VRIAAAGKVTK CR+LNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAPILGKD+T
Sbjct:   296 VRIAAAGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDST 355

Query:   181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 240
             IE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL
Sbjct:   356 IEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415

Query:   241 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 300
             AIIEY+PLLASQLG+GFFDDKLGALCMQWL+DKVYSIR+AAANN+KRLAEEFGP+WAMQH
Sbjct:   416 AIIEYVPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQH 475

Query:   301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA 360
             +VPQVL+M+NNPHYL+RM +L+AISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVA
Sbjct:   476 LVPQVLDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVA 535

Query:   361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 406
             K+LQSLIPIVDQSVV+K+IR CLV+LSEDPDVDVR+FA QAL S D
Sbjct:   536 KLLQSLIPIVDQSVVDKTIRQCLVDLSEDPDVDVRYFANQALNSID 581

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IGI;ISS

DICTYBASE|DDB_G0283601 pppA "protein phosphatase 2A scaffold subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
 Identities = 237/402 (58%), Positives = 315/402 (78%)

Query:     2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             PMV+R+AATNLG FA  +E   +KSEI+ +F+ L+ D+QDSVRLL VE C  LG +L  +
Sbjct:   181 PMVKRAAATNLGSFAKQIEKESVKSEILPLFQSLSTDEQDSVRLLGVENCALLGSMLTNE 240

Query:    62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
             + +  ILP I   S DKSWRVRYMVA  L ELCE++G E T+++++ A+V+LL+D EAEV
Sbjct:   241 ENIQFILPTIKASSLDKSWRVRYMVARLLKELCESMGTEITKTELIGAFVKLLKDTEAEV 300

Query:   122 RIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 181
             R  A+ ++  +C +L  E+ I+ ILPCVK+L SDSSQHVR+ALA VIM +API GK+ T+
Sbjct:   301 RTEASLRIADVCSLLTKEMNIKTILPCVKDLVSDSSQHVRAALAQVIMSLAPIYGKEDTL 360

Query:   182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 241
               LL +FL LLKD+FPDVRLNIISKLDQV++VIGI++LSQSLLPAIVELAED  WRVRLA
Sbjct:   361 THLLELFLHLLKDDFPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLA 420

Query:   242 IIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 301
             II+YIPLLASQLGV FFD+KLG LCM WL D V+SIR+AA NN+K+L E FG DWA  +I
Sbjct:   421 IIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNI 480

Query:   302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK 361
             +P+VL + ++P+YLYRMT L +IS L+ V+G ++  S ++P++     D+VPNI+FNVAK
Sbjct:   481 IPKVLSLHSHPNYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNVAK 540

Query:   362 VLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 403
               Q++IP++D ++V+  ++P LV+L ED D DV+F+A+QALQ
Sbjct:   541 TFQTIIPLLDSTIVQSRVKPLLVKLHEDTDKDVKFYASQALQ 582

GO:0005813 "centrosome" evidence=TAS

GO:0005829 "cytosol" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0017018 "myosin phosphatase activity" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 230/405 (56%), Positives = 310/405 (76%)

Query:     2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:    62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
             D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
             R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
             D+TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct:   359 DSTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query:   238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
             VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct:   419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query:   298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
                I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct:   479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query:   358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
             NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   539 NVAKSLQKIGPILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 230/405 (56%), Positives = 310/405 (76%)

Query:     2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:    62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
             D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
             R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
             D+TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct:   359 DSTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query:   238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
             VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct:   419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query:   298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
                I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct:   479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query:   358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
             NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   539 NVAKSLQKIGPILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
 Identities = 230/405 (56%), Positives = 309/405 (76%)

Query:     2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:    62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
             D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
             R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
             D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query:   238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
             VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct:   419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query:   298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
                I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct:   479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query:   358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
             NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 230/405 (56%), Positives = 309/405 (76%)

Query:     2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:    62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
             D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
             R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
             D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query:   238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
             VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct:   419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query:   298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
                I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct:   479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query:   358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
             NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 230/405 (56%), Positives = 309/405 (76%)

Query:     2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:    62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
             D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
             R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
             D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query:   238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
             VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct:   419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query:   298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
                I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct:   479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query:   358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
             NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 230/405 (56%), Positives = 309/405 (76%)

Query:     2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct:   179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238

Query:    62 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
             D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct:   239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298

Query:   122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
             R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct:   299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358

Query:   178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
             D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct:   359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418

Query:   238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
             VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct:   419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478

Query:   298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
                I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct:   479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538

Query:   358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
             NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36179	2AAA_DROME	No assigned EC number	0.5610	0.9587	0.6683	yes	no
Q54QR9	2AAA_DICDI	No assigned EC number	0.5895	0.9733	0.6866	yes	no
P36875	2AAA_PEA	No assigned EC number	0.8860	0.9563	0.9974	N/A	no
Q32PI5	2AAA_BOVIN	No assigned EC number	0.5679	0.9733	0.6808	yes	no
P30153	2AAA_HUMAN	No assigned EC number	0.5679	0.9733	0.6808	yes	no
P54612	2AAA_PIG	No assigned EC number	0.5679	0.9733	0.6808	yes	no
Q38950	2AAB_ARATH	No assigned EC number	0.9199	0.9878	0.6933	yes	no
Q38951	2AAG_ARATH	No assigned EC number	0.9101	0.9878	0.6933	no	no
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.5679	0.9733	0.6808	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_203000013 hypothetical protein (587 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	5e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.002

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI---QHILPCVKELSSDSSQH 159
           ++  +PA V LL  ++  V+  AA  ++ +    N  +        LP + +L     + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 160 VRS-ALATV--IMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI 203
           V   AL  +  +                +P  ++LL     D++ N 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 16/95 (16%)

Query: 32  FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLY 91
            E L  D    VR  A     ALG+L +P+      LP ++   +D    VR   A  L 
Sbjct: 5   LEALLSDPDPEVRAAAAR---ALGELGDPE-----ALPALLELLKDPDPEVRRAAAEALG 56

Query: 92  ELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAA 126
           +L +         + +PA + LL+D++  V  AAA
Sbjct: 57  KLGDP--------EALPALLELLQDDDDAVVRAAA 83

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 29/226 (12%)

Query: 21  AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW 80
              L  E      +L +D+   VRL A     ALG+L   +      +P++     D+  
Sbjct: 37  ILELAPEAADELLKLLEDEDLLVRLSAAV---ALGELGSEE-----AVPLLRELLSDEDP 88

Query: 81  RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE-VRIAAAGKVTKICRILNPE 139
           RVR   A+ L EL    G        VP  V LL ++E E VR AAA    +    L  E
Sbjct: 89  RVRDAAADALGEL----GDPEA----VPPLVELLENDENEGVRAAAA----RALGKLGDE 136

Query: 140 LAIQHILPCVKELSSDSSQHVR-SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD 198
            A+  +L  +++  S S+     +AL  V    A  LG+    E +  + + LL+DE  D
Sbjct: 137 RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLL-IELLEDEDAD 195

Query: 199 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
           VR    S L Q      +   +      +V+   D    VR A + 
Sbjct: 196 VRRAAASALGQ------LGSENVEAADLLVKALSDESLEVRKAALL 235

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	99.98
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.96
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.95
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.95
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.93
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.91
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.9
PRK09687	280	putative lyase; Provisional	99.9
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.88
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.88
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.88
PRK09687	280	putative lyase; Provisional	99.88
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.87
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.86
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.85
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.84
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.84
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.83
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.83
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.81
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.81
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.8
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.79
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.79
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.79
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.75
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.74
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.73
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.73
PTZ00429	746	beta-adaptin; Provisional	99.72
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.71
PTZ00429	746	beta-adaptin; Provisional	99.7
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.66
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.6
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.58
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.54
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.54
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.49
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.48
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.47
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.44
TIGR02270	410	conserved hypothetical protein. Members are found	99.43
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.42
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.41
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.4
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.4
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.39
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.37
KOG1243	690	consensus Protein kinase [General function predict	99.36
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.35
TIGR02270	410	conserved hypothetical protein. Members are found	99.3
KOG1243	690	consensus Protein kinase [General function predict	99.29
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.28
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.27
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	99.22
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.2
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.19
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.16
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.15
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.14
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.1
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.09
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.07
COG5096	757	Vesicle coat complex, various subunits [Intracellu	99.05
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	99.05
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.03
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.01
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.99
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.98
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.98
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.95
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.95
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.94
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.92
KOG0567	289	consensus HEAT repeat-containing protein [General	98.89
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.87
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.86
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.83
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.83
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.81
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.81
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.79
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.78
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.77
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.76
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.75
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.75
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.75
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.74
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.73
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.72
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.71
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.68
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.65
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.65
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.63
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.62
KOG2025	892	consensus Chromosome condensation complex Condensi	98.61
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.59
KOG2025	892	consensus Chromosome condensation complex Condensi	98.59
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.59
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.58
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.56
KOG2956	516	consensus CLIP-associating protein [General functi	98.55
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.54
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.53
KOG0414	1251	consensus Chromosome condensation complex Condensi	98.51
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	98.44
KOG0567	289	consensus HEAT repeat-containing protein [General	98.42
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.42
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.4
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.4
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.4
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.38
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.37
PF05004	309	IFRD: Interferon-related developmental regulator (	98.34
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.34
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.32
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.31
PF05004	309	IFRD: Interferon-related developmental regulator (	98.31
KOG2956	516	consensus CLIP-associating protein [General functi	98.31
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.28
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	98.26
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.24
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.22
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.2
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	98.19
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.17
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.17
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.13
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	98.13
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.1
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	98.07
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.03
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	98.02
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.02
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.01
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.01
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.95
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.95
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.95
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.91
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.91
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.91
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.9
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.88
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.82
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.82
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	97.81
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.79
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.78
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.73
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.7
COG5098	1128	Chromosome condensation complex Condensin, subunit	97.69
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.69
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	97.64
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.63
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.5
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.46
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	97.43
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.39
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.33
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.27
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	97.23
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	97.19
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	97.19
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	97.17
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	97.13
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	97.1
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.06
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.99
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.99
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.94
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.94
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.92
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.91
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.9
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.89
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.87
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.87
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	96.83
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.8
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.78
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.77
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.75
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	96.72
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	96.69
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.68
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	96.65
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	96.55
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	96.53
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.53
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	96.51
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	96.47
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.45
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	96.45
KOG2973	353	consensus Uncharacterized conserved protein [Funct	96.43
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	96.43
KOG2081	559	consensus Nuclear transport regulator [Intracellul	96.42
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	96.42
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	96.42
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	96.27
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.26
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.13
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	96.12
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.1
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	96.04
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.93
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.85
PF05536	543	Neurochondrin: Neurochondrin	95.8
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.79
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.69
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.67
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	95.66
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.66
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	95.51
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.5
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	95.48
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	95.48
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.31
KOG1048	717	consensus Neural adherens junction protein Plakoph	95.27
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.2
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.08
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.98
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	94.97
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.89
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	94.84
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.8
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	94.58
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.54
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.45
KOG2149	393	consensus Uncharacterized conserved protein [Funct	94.36
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	94.36
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	94.32
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	94.27
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	94.2
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	94.17
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	94.17
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.15
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	94.09
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.05
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	94.02
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.99
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	93.99
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	93.98
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.83
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	93.79
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	93.78
KOG2549	576	consensus Transcription initiation factor TFIID, s	93.67
KOG2149	393	consensus Uncharacterized conserved protein [Funct	93.62
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.59
KOG2005	878	consensus 26S proteasome regulatory complex, subun	93.49
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	93.45
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	93.43
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	93.42
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.36
cd03561	133	VHS VHS domain family; The VHS domain is present i	93.34
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	93.19
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	93.1
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	93.09
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	93.07
KOG1048	717	consensus Neural adherens junction protein Plakoph	93.02
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	92.95
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	92.94
PF05536	543	Neurochondrin: Neurochondrin	92.75
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	92.62
KOG2005	878	consensus 26S proteasome regulatory complex, subun	92.53
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	92.47
KOG2081	559	consensus Nuclear transport regulator [Intracellul	92.44
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.4
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.3
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	92.07
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	91.93
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	91.19
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	91.14
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	91.13
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	91.04
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	91.01
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	91.0
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	90.99
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	90.84
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	90.83
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.73
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	90.66
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	90.63
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	90.62
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	90.26
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	90.16
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	90.07
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	89.97
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	89.79
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	89.33
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	88.94
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	88.76
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	88.09
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	87.76
KOG4646	173	consensus Uncharacterized conserved protein, conta	87.68
KOG2973	353	consensus Uncharacterized conserved protein [Funct	87.56
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	87.51
PF12612	193	TFCD_C: Tubulin folding cofactor D C terminal; Int	87.26
KOG2199	462	consensus Signal transducing adaptor protein STAM/	87.15
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	87.1
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	87.04
KOG1837	1621	consensus Uncharacterized conserved protein [Funct	87.0
KOG3678	832	consensus SARM protein (with sterile alpha and arm	86.63
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.38
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	85.97
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	85.95
PF14222	552	MOR2-PAG1_N: Cell morphogenesis N-terminal	85.38
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	85.29
COG2733	415	Predicted membrane protein [Function unknown]	84.94
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	84.5
KOG3678	832	consensus SARM protein (with sterile alpha and arm	84.49
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	84.4
COG5369	743	Uncharacterized conserved protein [Function unknow	84.03
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	83.52
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	82.87
COG5369	743	Uncharacterized conserved protein [Function unknow	82.86
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	81.79
COG5110	881	RPN1 26S proteasome regulatory complex component [	81.5
PF03130	27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	81.32
KOG1087	470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	81.08
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	80.7

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-37  Score=283.84  Aligned_cols=409  Identities=51%  Similarity=0.754  Sum_probs=384.8

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch-hhhhhhHHHHHhhccCCC
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DCVAHILPVIVNFSQDKS   79 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~~l~~~l~~l~~d~~   79 (412)
                      +|+||.++++.++.+++.++.+.....++|.+..+..|+.+.||..|...+..+...+... +..+.+.+.+.+..+|++
T Consensus       250 ~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~  329 (759)
T KOG0211|consen  250 TPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGS  329 (759)
T ss_pred             chhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChh
Confidence            5899999999999999999988889999999999999999999999999999999998877 788889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC----HHHHHHhhhhhHHHhccC
Q 015150           80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQHILPCVKELSSD  155 (412)
Q Consensus        80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~~d  155 (412)
                      |++|....+....+...++.+..+.+..+.+...++|+.+++|.++..-...++.+..    .+...+.++|.+..+..|
T Consensus       330 ~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d  409 (759)
T KOG0211|consen  330 WRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD  409 (759)
T ss_pred             HHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc
Confidence            9999999999999999999988888999999999999999999999999999999887    556677789999999999


Q ss_pred             CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHH---HHHHHHHHhhchhhHHhhHHHHHHHHhc
Q 015150          156 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII---SKLDQVNQVIGIDLLSQSLLPAIVELAE  232 (412)
Q Consensus       156 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~---~~l~~i~~~~~~~~~~~~~~~~l~~~~~  232 (412)
                      .+..||.+.+..+..+...+|++...+.+.|.+...++|+.+.||.+..   ..+.......|.+...+..+|.+..+..
T Consensus       410 ~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~  489 (759)
T KOG0211|consen  410 NALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE  489 (759)
T ss_pred             ccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc
Confidence            9999999999999999999998888889999999999999999999998   4555556666778888999999999999


Q ss_pred             CCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC
Q 015150          233 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP  312 (412)
Q Consensus       233 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~  312 (412)
                      |..|++|.++.+.++.++...|..++.+.+.+.+...+.|....+|.+|+.++..++..+|.+|....++|.++....++
T Consensus       490 d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~  569 (759)
T KOG0211|consen  490 DLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD  569 (759)
T ss_pred             chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCc
Q 015150          313 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV  392 (412)
Q Consensus       313 ~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~  392 (412)
                      +|.+|.+.+.++..+++.+|.+.+.+.++|.+..+..|++++||..+++.+..+.+.+......+.+.|.+..+.+|++.
T Consensus       570 ~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~  649 (759)
T KOG0211|consen  570 NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQEL  649 (759)
T ss_pred             ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHhHHhh
Q 015150          393 DVRFFATQALQSKDQVM  409 (412)
Q Consensus       393 ~vr~~a~~al~~~~~~~  409 (412)
                      +||..|..|++.+....
T Consensus       650 dvr~~a~~a~~~i~l~~  666 (759)
T KOG0211|consen  650 DVRYRAILAFGSIELSR  666 (759)
T ss_pred             chhHHHHHHHHHHHHHH
Confidence            99999999999987643

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=99.98  E-value=2e-30  Score=240.36  Aligned_cols=408  Identities=22%  Similarity=0.296  Sum_probs=326.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHH
Q 015150            3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV   82 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~v   82 (412)
                      .||+++++.+..++...+++...+.+.|++..+..+++-..|..++..++..+..++++..+..+.+...++++|.++.|
T Consensus       174 ~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~V  253 (759)
T KOG0211|consen  174 GVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMV  253 (759)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhh
Confidence            58999999999999988887778899999999999988778999999999999999888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-HHHHhhhhhHHHhccCCcHHHH
Q 015150           83 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVR  161 (412)
Q Consensus        83 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr  161 (412)
                      |..+++.++.++.....+.....++|.+.++..|....||.+|...+..+...+..+ ...+.+.+.+.+..+|.+|.+|
T Consensus       254 r~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~  333 (759)
T KOG0211|consen  254 RRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVS  333 (759)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHH
Confidence            999999999999999988888899999999999999999999999999999998877 7888899999999999999999


Q ss_pred             HHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc----hhhHHhhHHHHHHHHhcCCCch
Q 015150          162 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHWR  237 (412)
Q Consensus       162 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~----~~~~~~~~~~~l~~~~~d~~~~  237 (412)
                      ..+...+..+...+|.+.....+.+.+..+++|+..++|.+.+.....+...+.    ++...+.++|.+..+..|.+..
T Consensus       334 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~  413 (759)
T KOG0211|consen  334 YMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALH  413 (759)
T ss_pred             HHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccch
Confidence            999999999998888866666788888899999989999888888888877766    3334455667777777776666


Q ss_pred             HHHHHHHHhhHHHhhhChhhHH------------------------------------------HHHHHHHHHHhcCchh
Q 015150          238 VRLAIIEYIPLLASQLGVGFFD------------------------------------------DKLGALCMQWLKDKVY  275 (412)
Q Consensus       238 vr~~~~~~l~~l~~~~~~~~~~------------------------------------------~~l~~~l~~~l~d~~~  275 (412)
                      +|.+.+..+..+...+|.+...                                          +..+|.+..+-.|..|
T Consensus       414 vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~w  493 (759)
T KOG0211|consen  414 VRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLW  493 (759)
T ss_pred             HHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhH
Confidence            6666655555554444443333                                          4444444444445555


Q ss_pred             HHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchH
Q 015150          276 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNI  355 (412)
Q Consensus       276 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~v  355 (412)
                      .+|.+....+..++...|..++.+.+-+.+...+.|.-+.+|.++...+..++..+|.+....++.|.++....++++.+
T Consensus       494 Rvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~  573 (759)
T KOG0211|consen  494 RVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLV  573 (759)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccch
Confidence            55555555555555555555555555555555555555566666666666666666655666677777777777778888


Q ss_pred             HHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          356 KFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       356 R~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      |.+++.++..++..+|.+.+.++++|.+..+..|++++||.++++.+..+...+.
T Consensus       574 R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~  628 (759)
T KOG0211|consen  574 RMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD  628 (759)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence            8888888888888889999999999999999999999999999999999987654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.1e-25  Score=207.92  Aligned_cols=410  Identities=13%  Similarity=0.173  Sum_probs=321.3

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhccCC
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK   78 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~d~   78 (412)
                      .|.||++.+..+..+++...++ -|+++++.+....+++++..|.+|..++.++...++..  .....+.+++.+.+.|+
T Consensus        93 ~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~  171 (1075)
T KOG2171|consen   93 EPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDP  171 (1075)
T ss_pred             chHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCC
Confidence            3789999999999999987666 79999999999999999999999999999999988764  34567999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHH----HhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhh
Q 015150           79 SWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYV----RLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPC  148 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~  148 (412)
                      +..||..++++++.++.....+.    ....++|.+.    +.+.+.+...-..++++|..+++..++-  .....++.+
T Consensus       172 s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~  251 (1075)
T KOG2171|consen  172 SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQF  251 (1075)
T ss_pred             cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            88899999999999999886322    1134555444    4556667777788888888887765542  344456666


Q ss_pred             HHHhcc--CCcHHHHHHHHHHHHhcCcccChh-----HHHHhhHHHHHHhhccc---------------C-hHHHHHHHH
Q 015150          149 VKELSS--DSSQHVRSALATVIMGMAPILGKD-----ATIEQLLPIFLSLLKDE---------------F-PDVRLNIIS  205 (412)
Q Consensus       149 l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~---------------~-~~vr~~~~~  205 (412)
                      ......  +-+..+|..+.+.+..+++.-...     .....++|.+..++.|.               + ..--..+.+
T Consensus       252 ~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~  331 (1075)
T KOG2171|consen  252 SLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQ  331 (1075)
T ss_pred             HHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHH
Confidence            666654  457899999999888877652111     12345667666665321               1 224456788


Q ss_pred             HHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHH
Q 015150          206 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAAN  283 (412)
Q Consensus       206 ~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~  283 (412)
                      ++..++..+|.+.+.+.+++.+..++.+++|+-|.+++.+++.+++..+...  ..+.++|++++.++|+++.||.+|+.
T Consensus       332 ~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~n  411 (1075)
T KOG2171|consen  332 ALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALN  411 (1075)
T ss_pred             HHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            9999999999888889999999999999999999999999999998876532  35779999999999999999999999


Q ss_pred             HHHHHHHHhChhh---hhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh---HHHHhhHH-HHHhhcCCCCchH
Q 015150          284 NVKRLAEEFGPDW---AMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE---ITCSQLLP-VVINASKDRVPNI  355 (412)
Q Consensus       284 ~l~~l~~~~~~~~---~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~---~~~~~il~-~l~~~l~d~~~~v  355 (412)
                      ++|.+...+.++.   ..+.+.|.+...+.++. .++...++.++-.+.+.+.++   +|.+.++. .+..+++.+.+.|
T Consensus       412 aigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v  491 (1075)
T KOG2171|consen  412 AIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYV  491 (1075)
T ss_pred             HHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence            9999999988753   34567778888777754 688888888888888877765   56777777 5555667778999


Q ss_pred             HHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCC----CCccHHHHHHHHHHHhHHhhhC
Q 015150          356 KFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED----PDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       356 R~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d----~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      |..+..+|+..+...+..  .|.+.++|.|++.+..    ....+|..+.+.++.++.++|.
T Consensus       492 ~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk  553 (1075)
T KOG2171|consen  492 QEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK  553 (1075)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence            999999999999888775  4668899999885432    2345778888888888888874

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3e-26  Score=201.83  Aligned_cols=405  Identities=17%  Similarity=0.173  Sum_probs=307.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch-------hhhhhhHHHHHhh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-------DCVAHILPVIVNF   74 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~-------~~~~~l~~~l~~l   74 (412)
                      |.+|..+...+.++++..+... |++++|.+.+++.+++......|..+|..+++.....       .-...++|.++++
T Consensus       104 ~lIr~tvGivITTI~s~~~~~~-wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f  182 (885)
T KOG2023|consen  104 PLIRATVGIVITTIASTGGLQH-WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQF  182 (885)
T ss_pred             HHHHhhhhheeeeeeccccccc-chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHH
Confidence            5667777777777776665544 7999999999999999888999999999998864431       1234589999999


Q ss_pred             ccCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHH
Q 015150           75 SQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK  150 (412)
Q Consensus        75 ~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~  150 (412)
                      .+++++.+|..++.++..+.-.-....  ..+..+..+..+.+|++++||+..+.++.-+.+..++.  +....++.++.
T Consensus       183 ~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML  262 (885)
T KOG2023|consen  183 FKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYML  262 (885)
T ss_pred             HhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHH
Confidence            999999999999999887654322221  23567888888899999999999999999998876554  44566888889


Q ss_pred             HhccCCcHHHHHHHHHHHHhcCcccChh----HHHHhhHHHHHHhh----------c-----------------------
Q 015150          151 ELSSDSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLL----------K-----------------------  193 (412)
Q Consensus       151 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l----------~-----------------------  193 (412)
                      +..+|.++.|.-.||+.+..+++.--..    .+...++|.+.+-+          +                       
T Consensus       263 ~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk  342 (885)
T KOG2023|consen  263 QRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSK  342 (885)
T ss_pred             HHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhch
Confidence            9999999999999999998888654222    12356667665422          2                       


Q ss_pred             -------------c----------cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHH
Q 015150          194 -------------D----------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  250 (412)
Q Consensus       194 -------------d----------~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~  250 (412)
                                   |          .++..|+-.+.+|..++..++.+.+ +.++|.+.+.+.++.|.+|.+.+-+++.++
T Consensus       343 ~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIA  421 (885)
T KOG2023|consen  343 EHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIA  421 (885)
T ss_pred             hccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHH
Confidence                         0          1267899889999999988886655 889999999999999999999999999999


Q ss_pred             hhhCh--hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh---hhhhhHHHHHhhhcCCchHHHHHHHHHHH
Q 015150          251 SQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAIS  325 (412)
Q Consensus       251 ~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~l~~l~~~~~~~~~~~r~~~~~~l~  325 (412)
                      +..-.  -...+.++|.++.+|.|..+-||.-++.+|+++....-.+.   +...++..+++.+-|.+-+|.++++.++.
T Consensus       422 EGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfA  501 (885)
T KOG2023|consen  422 EGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFA  501 (885)
T ss_pred             HHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            98733  23456799999999999999999999999999988764332   23345555566667889999999999999


Q ss_pred             Hhccccchh--HHHHhhHHHHHhhcC---CCCchHHHHHHHHHHHHhhhhch----HHHHhhHHHHH-Hh--hcCCCCcc
Q 015150          326 LLAPVMGSE--ITCSQLLPVVINASK---DRVPNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCL-VE--LSEDPDVD  393 (412)
Q Consensus       326 ~l~~~~~~~--~~~~~il~~l~~~l~---d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~i~~~l-~~--l~~d~~~~  393 (412)
                      .+-+.-|.+  +|...++..+...++   .++-.   ....+++.++..+|.    ..+.+.++|.| .+  +++|.|++
T Consensus       502 tleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl---ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKd  578 (885)
T KOG2023|consen  502 TLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL---ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKD  578 (885)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHHhhccee---hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccch
Confidence            998777766  577777777766654   23322   345666666666654    33444455544 44  68999999


Q ss_pred             HHHHHHHHHHHhHHhhhCC
Q 015150          394 VRFFATQALQSKDQVMMSG  412 (412)
Q Consensus       394 vr~~a~~al~~~~~~~~~~  412 (412)
                      + .-..+.+.+++.++|+|
T Consensus       579 L-fPLLEClSsia~AL~~g  596 (885)
T KOG2023|consen  579 L-FPLLECLSSIASALGVG  596 (885)
T ss_pred             H-HHHHHHHHHHHHHHhcc
Confidence            7 56778888888888875

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.1e-23  Score=197.68  Aligned_cols=410  Identities=19%  Similarity=0.193  Sum_probs=316.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhh---hhhHHHHHHHHH-HhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc
Q 015150            1 MPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFE-ELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ   76 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~-~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~   76 (412)
                      +|.+|+-++-.+.+++...-.   ....+.+...+. ...+...+.+|..-++.+..+++...++ .|+.+++++.+..+
T Consensus        50 ~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~  128 (1075)
T KOG2171|consen   50 DPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTK  128 (1075)
T ss_pred             ChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhc
Confidence            478888888888887765321   233444554443 3456667889999999999999998888 89999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC--HH--HHHHhhhhhHH
Q 015150           77 DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PE--LAIQHILPCVK  150 (412)
Q Consensus        77 d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~--~~~~~~~~~l~  150 (412)
                      ++++..|..+...|..+...++...  +..++.+.+.+.+.|++..||..++++++.++...+  ..  .....++|.+.
T Consensus       129 S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l  208 (1075)
T KOG2171|consen  129 SPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLL  208 (1075)
T ss_pred             CCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHH
Confidence            9999999999999999999998765  446899999999999998899999999999999885  22  22233556444


Q ss_pred             H----hccCCcHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhccc--ChHHHHHHHHHHHHHHHhhch-----h
Q 015150          151 E----LSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGI-----D  217 (412)
Q Consensus       151 ~----~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~i~~~~~~-----~  217 (412)
                      .    .+.+.+...-..+.+++.+++...++-  .....++.......++.  ++.+|..|+..+..+.+.-..     .
T Consensus       209 ~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~  288 (1075)
T KOG2171|consen  209 NVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLA  288 (1075)
T ss_pred             HHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhch
Confidence            3    456677777778888888887665542  12244555555555544  689999999999888776221     1


Q ss_pred             hHHhhHHHHHHHHhcC----CC------------chHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHH
Q 015150          218 LLSQSLLPAIVELAED----RH------------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAA  281 (412)
Q Consensus       218 ~~~~~~~~~l~~~~~d----~~------------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  281 (412)
                      .+.+.+++.+..++.+    +.            ......+..++..++..+|++...+.+++.+..++.+++|.-|.++
T Consensus       289 ~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa  368 (1075)
T KOG2171|consen  289 LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA  368 (1075)
T ss_pred             hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence            1345667777665432    11            2246678889999999999988888899999999999999999999


Q ss_pred             HHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCC-CchH
Q 015150          282 ANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDR-VPNI  355 (412)
Q Consensus       282 ~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~-~~~v  355 (412)
                      +.+++.+.+..+..  ...+.++|.+.+.++|++++||.+++.++|+++.-++++   .+.+.+.|.+...+.|+ ++.|
T Consensus       369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV  448 (1075)
T KOG2171|consen  369 LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRV  448 (1075)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHH
Confidence            99999999866532  124678889999999999999999999999999988875   46777888888888775 5688


Q ss_pred             HHHHHHHHHHHhhhhchHH---HHhhHHH-HHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          356 KFNVAKVLQSLIPIVDQSV---VEKSIRP-CLVELSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       356 R~~~~~~l~~l~~~~~~~~---~~~~i~~-~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      ...++.++-.++.....+.   |.+.++. .+..+...+.+.||..+..|+++++..+++
T Consensus       449 ~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  449 QAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence            8888888888876655543   3334444 455567778889999999999999998875

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3e-24  Score=189.42  Aligned_cols=372  Identities=20%  Similarity=0.197  Sum_probs=282.5

Q ss_pred             CCchHHHHHHHHhHHHHhhccC---chhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc
Q 015150           38 DDQDSVRLLAVEGCGALGKLLE---PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL  114 (412)
Q Consensus        38 ~~~~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  114 (412)
                      +++..+|..|--.|.+-.+...   +.....++-..+++.+.|+++.+|...-..++.++..-+ -..+++++|.+.+++
T Consensus        59 ~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L  137 (885)
T KOG2023|consen   59 SEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELL  137 (885)
T ss_pred             ccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHh
Confidence            3344567666555554333211   123445566667777889999888776666665554322 235789999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHhhCHH-------HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH--HHhhH
Q 015150          115 RDNEAEVRIAAAGKVTKICRILNPE-------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLL  185 (412)
Q Consensus       115 ~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~  185 (412)
                      ..++....+.|+.+|.++++-..+.       ...+.++|-+....+++++.+|.-++.++..+.-.......  .+..+
T Consensus       138 ~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fl  217 (885)
T KOG2023|consen  138 DSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFL  217 (885)
T ss_pred             cCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHH
Confidence            9999999999999999998743221       23456899999999999999999999999887754433322  25666


Q ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH---HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC-hhh---H
Q 015150          186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGF---F  258 (412)
Q Consensus       186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~---~  258 (412)
                      ..+..+-.|++++||+....++.-+.+.- ++.+   ...++..+.+...|.+..|-..+++.+..+++.-- ++.   +
T Consensus       218 e~lFalanD~~~eVRk~vC~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~  296 (885)
T KOG2023|consen  218 EILFALANDEDPEVRKNVCRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY  296 (885)
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence            77777789999999999999998887653 3333   34567777888899999999999999988887542 222   3


Q ss_pred             HHHHHHHHHHHh----------c------------------------------------C----------chhHHHHHHH
Q 015150          259 DDKLGALCMQWL----------K------------------------------------D----------KVYSIRDAAA  282 (412)
Q Consensus       259 ~~~l~~~l~~~l----------~------------------------------------d----------~~~~vr~~a~  282 (412)
                      .+.++|++++.+          +                                    |          .+|+.|+..+
T Consensus       297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA  376 (885)
T KOG2023|consen  297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA  376 (885)
T ss_pred             HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence            466778877543          2                                    0          1388999999


Q ss_pred             HHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHH
Q 015150          283 NNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVA  360 (412)
Q Consensus       283 ~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~  360 (412)
                      .++..+...+|.+ +...++|.+.+.+.+..|.+|++++-++|++++.+-..  ++.+.++|.++.++.|+.+-||..++
T Consensus       377 AaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC  455 (885)
T KOG2023|consen  377 AALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC  455 (885)
T ss_pred             HHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence            9999999888765 56789999999999999999999999999999877543  56788999999999999999999999


Q ss_pred             HHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhCC
Q 015150          361 KVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG  412 (412)
Q Consensus       361 ~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~~  412 (412)
                      ++|+..++.+-.+   .+...++..+...+-|.+++|+.+|+.|+.++-+.+|++
T Consensus       456 WTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e  510 (885)
T KOG2023|consen  456 WTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE  510 (885)
T ss_pred             eeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch
Confidence            9999998765433   333445555555568999999999999999999988763

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.91  E-value=3.1e-22  Score=197.14  Aligned_cols=275  Identities=22%  Similarity=0.273  Sum_probs=221.6

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL  146 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  146 (412)
                      -++.+...+.|+++.||..+++.|+.+..        ...++.+...++|+++.||..|+.+|..+.+..+..       
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-------
Confidence            44567788899999999999999998752        557899999999999999999999999886544332       


Q ss_pred             hhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHH
Q 015150          147 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  226 (412)
Q Consensus       147 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~  226 (412)
                      +.+...+.++++.||.+++..|+.+..  +.       .+.+...++|+++.||..++.+|+.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            455667788999999999999988652  11       2346678999999999999999998632           133


Q ss_pred             HHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHH
Q 015150          227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL  306 (412)
Q Consensus       227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~  306 (412)
                      +..++.|+++.||..++..|+.+...-.      ...+.+..+++|+++.||.+|+.+|+.+..    +   ..+.+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHH
Confidence            5678899999999999999987754321      135667888999999999999999987642    1   23446678


Q ss_pred             hhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhh
Q 015150          307 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL  386 (412)
Q Consensus       307 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l  386 (412)
                      ..+.|++|.+|.+++++|+.+..        +...+.+...++|+++.||..++.+|+.+.   +    .+...+.|...
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a  878 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA  878 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence            88999999999999999998652        345688999999999999999999999872   1    24578888899


Q ss_pred             cCCCCccHHHHHHHHHHH
Q 015150          387 SEDPDVDVRFFATQALQS  404 (412)
Q Consensus       387 ~~d~~~~vr~~a~~al~~  404 (412)
                      ++|+|.+||..|..||..
T Consensus       879 l~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        879 LTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhCCCHHHHHHHHHHHhh
Confidence            999999999999999874

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.2e-19  Score=160.90  Aligned_cols=404  Identities=18%  Similarity=0.181  Sum_probs=304.9

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCchh-hhhhhHHHHHhhccCCC
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQD-CVAHILPVIVNFSQDKS   79 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~~~-~~~~l~~~l~~l~~d~~   79 (412)
                      +.||...+++.......-+.+. ...++|...+.++ +.++.+|.......+..+.++...+ ....+...+..-+..|+
T Consensus        31 ~~v~~~ml~a~~~~~~~~~~~~-v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps  109 (569)
T KOG1242|consen   31 IDVRGNMLEAGEAAINQHGDQN-VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPS  109 (569)
T ss_pred             hhhHHhHHHHHHHHHHhhhHHH-HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCc
Confidence            4567777777766666555433 4557787766665 4467788888888888888865543 33446777777788899


Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH-HHhhhhhHHHhccCCcH
Q 015150           80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-IQHILPCVKELSSDSSQ  158 (412)
Q Consensus        80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~~~~d~~~  158 (412)
                      ..+|.+...++..+........ ..++.+.+.++++.....-|..+...+..+....+.+.+ ...++..+.+...|...
T Consensus       110 ~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~  188 (569)
T KOG1242|consen  110 KSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKS  188 (569)
T ss_pred             HHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccch
Confidence            9999999999998876544333 467888888999888888899999888888776655433 33477777788888665


Q ss_pred             HHHH-HHHHHHHhcCcccCh--hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCC
Q 015150          159 HVRS-ALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH  235 (412)
Q Consensus       159 ~vr~-~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~  235 (412)
                      ..+. .+.-++......+|.  +.+.-.++|.+.....|..+.||.++..+...+...+..... +.++|.+..-+.+..
T Consensus       189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~~~k  267 (569)
T KOG1242|consen  189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLLEAK  267 (569)
T ss_pred             hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHHHHh
Confidence            4444 444444444445553  233345667777777889999999999999999888876665 555666555555559


Q ss_pred             chHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc
Q 015150          236 WRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH  313 (412)
Q Consensus       236 ~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~  313 (412)
                      |+.+.++++.++.++...+.+  ...+.++|.+.+.|.|..++||.++..++..+.....+.. ...++|.+.+.+.|++
T Consensus       268 WrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~  346 (569)
T KOG1242|consen  268 WRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPS  346 (569)
T ss_pred             hhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcc
Confidence            999999999999998887653  3568899999999999999999999999999998887665 4568899999999998


Q ss_pred             hHHHHHHHHHHHHh--ccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhhc
Q 015150          314 YLYRMTILQAISLL--APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELS  387 (412)
Q Consensus       314 ~~~r~~~~~~l~~l--~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~  387 (412)
                      ..+.. +++.++.-  ...... +....+.|.+...+.+.+...++.++..++.++.-..++    .+...++|.++..+
T Consensus       347 ~~~~e-~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~  424 (569)
T KOG1242|consen  347 CYTPE-CLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENL  424 (569)
T ss_pred             cchHH-HHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHh
Confidence            54333 33333332  222222 357789999999999999999999999999999888443    56788999999999


Q ss_pred             CCCCccHHHHHHHHHHHhHHhhhC
Q 015150          388 EDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       388 ~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      .|++++||..+++|++.+.+-+|.
T Consensus       425 ~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  425 DDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988874

>PRK09687 putative lyase; Provisional

Probab=99.90  E-value=2.4e-21  Score=163.87  Aligned_cols=253  Identities=19%  Similarity=0.172  Sum_probs=189.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP  186 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  186 (412)
                      .+.+...+.|++..||..++..|..+..        ..+++.+..+++|+++.+|..++..|+.+...-..   ....+|
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~   93 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFN   93 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHH
Confidence            4566677788888888888888876643        33566677777888888888888888887632110   224556


Q ss_pred             HHHHh-hcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH
Q 015150          187 IFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  265 (412)
Q Consensus       187 ~l~~~-l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  265 (412)
                      .+..+ ++|+++.||..++.+|+.+...-  ......+++.+.....|++|+||..++..++.+.    .    +..++.
T Consensus        94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----~----~~ai~~  163 (280)
T PRK09687         94 ILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----D----EAAIPL  163 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----C----HHHHHH
Confidence            66665 67888888888888888875321  1112345666777788889999999888886442    1    336778


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHH
Q 015150          266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI  345 (412)
Q Consensus       266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~  345 (412)
                      +..+++|+++.||..|+.+|+.+.  .+    .+...+.|...+.|+++.+|..++..|+.+.        ....+|.++
T Consensus       164 L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~Li  229 (280)
T PRK09687        164 LINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSVLI  229 (280)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHHHH
Confidence            888899999999999999998871  11    2457788888889999999999999998864        246788889


Q ss_pred             hhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcC-CCCccHHHHHHHHHHH
Q 015150          346 NASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS  404 (412)
Q Consensus       346 ~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~  404 (412)
                      +.++++.  +|..++.+++.+..        +..+|.|..+++ ++|..|+..+.+++..
T Consensus       230 ~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        230 KELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            9888865  78889999998875        478899988775 8899999999888864

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2e-19  Score=161.61  Aligned_cols=409  Identities=18%  Similarity=0.182  Sum_probs=290.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchH-HHHHHHHhHHHHhhccCchhh---hhhhHHHHHhhc--
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS-VRLLAVEGCGALGKLLEPQDC---VAHILPVIVNFS--   75 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~l~--   75 (412)
                      |..+..|+++++.++..--+...|+.+++.+.....++.+. +|.++++++|.+++.+.++..   .+.++..+.+..  
T Consensus       104 p~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk  183 (859)
T KOG1241|consen  104 PRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRK  183 (859)
T ss_pred             CCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccc
Confidence            56677889999999986556677999999988888777766 899999999999999988633   344666666654  


Q ss_pred             cCCChHHHHHHHHHHHHHHHH----hCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-------------
Q 015150           76 QDKSWRVRYMVANQLYELCEA----VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-------------  138 (412)
Q Consensus        76 ~d~~~~vR~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------------  138 (412)
                      ..++..||.++.++|-.-.+.    +..+...+.++....+..+.++.+||.+|+.||.++....-+             
T Consensus       184 ~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfai  263 (859)
T KOG1241|consen  184 EETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAI  263 (859)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999998765543    334555567777777778888888888888888776532100             


Q ss_pred             --------------------------H------------------------HHHHhhhhhHHHhcc-------CCcHHHH
Q 015150          139 --------------------------E------------------------LAIQHILPCVKELSS-------DSSQHVR  161 (412)
Q Consensus       139 --------------------------~------------------------~~~~~~~~~l~~~~~-------d~~~~vr  161 (412)
                                                +                        ...+.++|.+.+++.       |.+|..-
T Consensus       264 tl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~  343 (859)
T KOG1241|consen  264 TLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA  343 (859)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence                                      0                        001246777777652       3578888


Q ss_pred             HHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh---HHhhHHHHHHHHhcCCCchH
Q 015150          162 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDRHWRV  238 (412)
Q Consensus       162 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~---~~~~~~~~l~~~~~d~~~~v  238 (412)
                      .++..|+.-+++..|++.. +..+|++..-++.+++.-|.+++-+++++...-.++.   +.+..+|.+..++.|++--+
T Consensus       344 kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~V  422 (859)
T KOG1241|consen  344 KAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWV  422 (859)
T ss_pred             HHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhh
Confidence            8888888888877776643 3777888888888888899999989988877654443   24556778888888887777


Q ss_pred             HHHHHHHhhHHHhhhC----hhhHHHHHHHHHHHHhcC------------------------------------------
Q 015150          239 RLAIIEYIPLLASQLG----VGFFDDKLGALCMQWLKD------------------------------------------  272 (412)
Q Consensus       239 r~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d------------------------------------------  272 (412)
                      |.++.++++.++..+.    .+...+.+++.++..|+|                                          
T Consensus       423 kdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~  502 (859)
T KOG1241|consen  423 KDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGS  502 (859)
T ss_pred             cchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHH
Confidence            7777777777766542    222222233333333322                                          


Q ss_pred             ----------chhHHHHHHHHHHHHHHHHhChhh----------------------------------------------
Q 015150          273 ----------KVYSIRDAAANNVKRLAEEFGPDW----------------------------------------------  296 (412)
Q Consensus       273 ----------~~~~vr~~a~~~l~~l~~~~~~~~----------------------------------------------  296 (412)
                                .....|.+|.++|+++++....+.                                              
T Consensus       503 Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i  582 (859)
T KOG1241|consen  503 LLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSI  582 (859)
T ss_pred             HHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHH
Confidence                      234588888888888877543210                                              


Q ss_pred             ----------hhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhc-CCCCchHHHHHHHH
Q 015150          297 ----------AMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINAS-KDRVPNIKFNVAKV  362 (412)
Q Consensus       297 ----------~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l-~d~~~~vR~~~~~~  362 (412)
                                ..+.++..+++.++. ++..+.+.+..+++.++..+|+.  .|.+.+.|++...+ +-.+..|=.++...
T Consensus       583 ~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVgl  662 (859)
T KOG1241|consen  583 IRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGL  662 (859)
T ss_pred             HHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence                      123355555555555 34557777888888888888876  47888999999888 55677788888888


Q ss_pred             HHHHhhhhchH--HHHhhHHHHHHhhcCCC--CccHHHHHHHHHHHhHHhhhC
Q 015150          363 LQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       363 l~~l~~~~~~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~~~~~~~~  411 (412)
                      .|.++..++.+  .+.+.+...|.+.++.|  +.+|+-...+++|.|+-+.|.
T Consensus       663 Vgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~  715 (859)
T KOG1241|consen  663 VGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA  715 (859)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH
Confidence            88888888876  46677777777765554  446888888999998888774

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.5e-19  Score=158.04  Aligned_cols=402  Identities=16%  Similarity=0.167  Sum_probs=301.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCc-hHHHHHHHHhHHHHhhccCc--------------hhhhhh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP--------------QDCVAH   66 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~i~~~~~~--------------~~~~~~   66 (412)
                      +.+|++|-..|..++.    +.+...+.-+-..+.++++ +..|..|.-.|.+-...-.+              .+.+..
T Consensus        15 ~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~req   90 (859)
T KOG1241|consen   15 QNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQ   90 (859)
T ss_pred             cchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHH
Confidence            5778888888877765    2333333334444555554 44687776666654432221              224566


Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHH-HHHHHHHHHHHHHHhhCHHHHH---
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE-VRIAAAGKVTKICRILNPELAI---  142 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~---  142 (412)
                      +-..+++.+..+.++.+..+.++++.++..--+...|+++++.+.....++.+. +|+.+++++|.+++.+.++...   
T Consensus        91 VK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~s  170 (859)
T KOG1241|consen   91 VKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQS  170 (859)
T ss_pred             HHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            777888888999999999999999999987666677889999999888887766 9999999999999999988443   


Q ss_pred             HhhhhhHHHhc--cCCcHHHHHHHHHHHHhcCc----ccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch
Q 015150          143 QHILPCVKELS--SDSSQHVRSALATVIMGMAP----ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  216 (412)
Q Consensus       143 ~~~~~~l~~~~--~d~~~~vr~~~~~~l~~l~~----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~  216 (412)
                      +.++..+....  ..++..||-++.+++..-.+    .|..+.-.+.++...++.-+.++.++|.++..+|.++....-.
T Consensus       171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~  250 (859)
T KOG1241|consen  171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE  250 (859)
T ss_pred             hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            33555555544  45788999999988876443    3344444556767777777778899999999999999765431


Q ss_pred             ---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh-h--------------Ch--h----hHHHHHHHHHHHHhc-
Q 015150          217 ---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-L--------------GV--G----FFDDKLGALCMQWLK-  271 (412)
Q Consensus       217 ---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-~--------------~~--~----~~~~~l~~~l~~~l~-  271 (412)
                         ..+.+.+++.....+++++..|...+++.++.++.- +              .+  .    ...+.++|.++++|. 
T Consensus       251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k  330 (859)
T KOG1241|consen  251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK  330 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence               112233555556677889999999999888866531 1              11  0    112478899998873 


Q ss_pred             ------CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHH
Q 015150          272 ------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLP  342 (412)
Q Consensus       272 ------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~  342 (412)
                            |++|.+-.+|-.+|.-+.+..|.+ +.+.++|.+.+.+++++|+-|++++-++|.+.+.-...   ++....+|
T Consensus       331 qde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp  409 (859)
T KOG1241|consen  331 QDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALP  409 (859)
T ss_pred             CCCCcccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhH
Confidence                  457889999999999999988876 45689999999999999999999999999998765543   56778999


Q ss_pred             HHHhhcCCCCchHHHHHHHHHHHHhhhhch----HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150          343 VVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       343 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      .+++...|+.-.||.+++++++.++..+..    ..+.+.+++.+.+-++|. +.|..++++++..+++..
T Consensus       410 ~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~  479 (859)
T KOG1241|consen  410 SIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAA  479 (859)
T ss_pred             HHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999877643    455666777777766665 889999999999998754

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.88  E-value=1.1e-19  Score=162.74  Aligned_cols=394  Identities=19%  Similarity=0.269  Sum_probs=288.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhccCC
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK   78 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~d~   78 (412)
                      +-||...+++++.+++.++-+    .++|++...+.+. +..-|..++++...++...+-.  .....++.++.+++.|.
T Consensus       490 eYVRnttarafavvasalgip----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De  565 (1172)
T KOG0213|consen  490 EYVRNTTARAFAVVASALGIP----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE  565 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhccc
Confidence            458899999999999877744    4888888888877 6667888899999988876654  23444777888899999


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCccc--c------------------------------------------hHHHHHHhc
Q 015150           79 SWRVRYMVANQLYELCEAVGPEPTRS--D------------------------------------------VVPAYVRLL  114 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~~~~~~--~------------------------------------------l~~~l~~~l  114 (412)
                      +..||..++.+++.+++..++-.+.+  .                                          ++-.+.+-.
T Consensus       566 ~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf  645 (1172)
T KOG0213|consen  566 QQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREF  645 (1172)
T ss_pred             chhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhh
Confidence            99999999999999999888432210  0                                          111111122


Q ss_pred             CCChHHHHHHHHHHHHHHHHhhCH--------------------------------------------------------
Q 015150          115 RDNEAEVRIAAAGKVTKICRILNP--------------------------------------------------------  138 (412)
Q Consensus       115 ~d~~~~vr~~a~~~l~~l~~~~~~--------------------------------------------------------  138 (412)
                      ..++.+.++..++.+.+.+...+-                                                        
T Consensus       646 ~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~l  725 (1172)
T KOG0213|consen  646 GSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDL  725 (1172)
T ss_pred             CCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhh
Confidence            344545555444444433321110                                                        


Q ss_pred             --------------------------------------------------------------------HHHHHhhhhhHH
Q 015150          139 --------------------------------------------------------------------ELAIQHILPCVK  150 (412)
Q Consensus       139 --------------------------------------------------------------------~~~~~~~~~~l~  150 (412)
                                                                                          ..+...+...++
T Consensus       726 kde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL  805 (1172)
T KOG0213|consen  726 KDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTIL  805 (1172)
T ss_pred             ccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence                                                                                011122333444


Q ss_pred             HhccCCcHHHHHHHHHHHHhcCccc---ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH---HhhHH
Q 015150          151 ELSSDSSQHVRSALATVIMGMAPIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLL  224 (412)
Q Consensus       151 ~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~---~~~~~  224 (412)
                      ..++++++.||..++..++.++..+   +.+.....+--.+.+.+..+.++|-...+.++..|....|-...   .+.++
T Consensus       806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dll  885 (1172)
T KOG0213|consen  806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLL  885 (1172)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhc
Confidence            5667778888888877777766443   44444555666667777777888888888888888777764332   36788


Q ss_pred             HHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH---HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhh
Q 015150          225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  301 (412)
Q Consensus       225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  301 (412)
                      |.+...+++...+|...++..++.++...+...-...++-+   ++.+|..-+.++|.+|..++|-+.+.+|+.    .+
T Consensus       886 PrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----dV  961 (1172)
T KOG0213|consen  886 PRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DV  961 (1172)
T ss_pred             ccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HH
Confidence            88999999999999999999999998754332112223333   355677888999999999999999999985    46


Q ss_pred             HHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhH
Q 015150          302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSI  379 (412)
Q Consensus       302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i  379 (412)
                      +..|++.++....+.|.+.--+++.+++.+|.-    .++|.+.+-..-|+.+|...++++++.+++..|..  .+.-.+
T Consensus       962 LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav 1037 (1172)
T KOG0213|consen  962 LATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAV 1037 (1172)
T ss_pred             HHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHh
Confidence            777888888888888998888899888888864    58899998889999999999999999999888763  455679


Q ss_pred             HHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          380 RPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       380 ~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      .|.|.-.+.|.|.-.|+.++.++..++-
T Consensus      1038 ~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1038 TPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             hHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988764

>PRK09687 putative lyase; Provisional

Probab=99.88  E-value=2.2e-20  Score=158.02  Aligned_cols=254  Identities=15%  Similarity=0.091  Sum_probs=199.9

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL  146 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  146 (412)
                      -.+.+..++.|++..||..++..|+.+..        ..+++.+..+++|+++.+|..++.+|+.+...-..   ....+
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~   92 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVF   92 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHH
Confidence            44456777799999999999999987763        66788888999999999999999999987642111   22466


Q ss_pred             hhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHH
Q 015150          147 PCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  225 (412)
Q Consensus       147 ~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~  225 (412)
                      |.+..+ .+|+++.||..++.++|.+...-.  .....+++.+...+.|+++.||..++.+|+.+..        +..++
T Consensus        93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~  162 (280)
T PRK09687         93 NILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIP  162 (280)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHH
Confidence            777766 689999999999999998853211  1123456677778889999999999999976642        35778


Q ss_pred             HHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHH
Q 015150          226 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV  305 (412)
Q Consensus       226 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l  305 (412)
                      .+..+++|++|.||..++..|+.+.  .+    .+...+.+...+.|+++.||..|+..|+.+-.        ...+|.|
T Consensus       163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L  228 (280)
T PRK09687        163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL  228 (280)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence            9999999999999999999998872  11    23477788899999999999999999987432        4688999


Q ss_pred             HhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcC-CCCchHHHHHHHHHHH
Q 015150          306 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQS  365 (412)
Q Consensus       306 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~  365 (412)
                      .+.+++++  +|..++.+++.+..        +..+|.+..+++ ++++.|+..+.+++.+
T Consensus       229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            99999877  56778888888763        467888888886 7889999999888764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.87  E-value=6.2e-20  Score=180.95  Aligned_cols=275  Identities=20%  Similarity=0.192  Sum_probs=218.1

Q ss_pred             HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchH
Q 015150           28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV  107 (412)
Q Consensus        28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  107 (412)
                      -++.+...+.|+++.+|..|+..|+.+..        ...++.+...+.|+++.||..++..|+.+......       .
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence            34556667899999999999999987652        34677888888999999999999999988653221       2


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150          108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI  187 (412)
Q Consensus       108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  187 (412)
                      +.+...++|+++.||..++..|+.+...  .       .+.+...+.|+++.||..++.+++.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            4666788899999999999999886421  1       1345667899999999999999998632           134


Q ss_pred             HHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHH
Q 015150          188 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  267 (412)
Q Consensus       188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  267 (412)
                      +..++.|++++||..++.+|+.+...-      ....+.+..+++|+++.||.+++..|+.+...       +.+.+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence            567899999999999999999886531      12367788999999999999999998776421       12334577


Q ss_pred             HHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhh
Q 015150          268 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA  347 (412)
Q Consensus       268 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~  347 (412)
                      ..+.|+++.||..|+.+|+.+-.        +..++.|...++|+++.||..++.+|+.+.   +    .+...+.+...
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a  878 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA  878 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence            88999999999999999986531        346688999999999999999999999962   1    23467777888


Q ss_pred             cCCCCchHHHHHHHHHHH
Q 015150          348 SKDRVPNIKFNVAKVLQS  365 (412)
Q Consensus       348 l~d~~~~vR~~~~~~l~~  365 (412)
                      ++|+++.||..+.++|..
T Consensus       879 l~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        879 LTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhCCCHHHHHHHHHHHhh
Confidence            999999999999999864

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.86  E-value=1e-18  Score=165.34  Aligned_cols=390  Identities=16%  Similarity=0.183  Sum_probs=235.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR   81 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~   81 (412)
                      |.+|-.|.++++.+..    ....+.+.+.+.+++.|+++.||+.|+.++..+.+..++..... +.+.+.+++.|+++.
T Consensus        93 ~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~  167 (526)
T PF01602_consen   93 PYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPS  167 (526)
T ss_dssp             HHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHH
T ss_pred             HHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcch
Confidence            5677778888877663    45567788888888888888899988888888888754432222 788888888888888


Q ss_pred             HHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcH
Q 015150           82 VRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ  158 (412)
Q Consensus        82 vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~  158 (412)
                      |+.+++..+..+ + ..++   .....++..+.+.+.++++..+...+..+..++...........+++.+..++++.++
T Consensus       168 V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~  245 (526)
T PF01602_consen  168 VVSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSP  245 (526)
T ss_dssp             HHHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcccc
Confidence            888888888887 1 1111   1122334444444466666666666655554433211111002344444444444444


Q ss_pred             HHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh--------------------
Q 015150          159 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--------------------  218 (412)
Q Consensus       159 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~--------------------  218 (412)
                      .|+..++.++..+....   .....+++.+..++.++++++|..+++.+..++....+..                    
T Consensus       246 ~V~~e~~~~i~~l~~~~---~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~  322 (526)
T PF01602_consen  246 SVVYEAIRLIIKLSPSP---ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRK  322 (526)
T ss_dssp             HHHHHHHHHHHHHSSSH---HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHH
T ss_pred             HHHHHHHHHHHHhhcch---HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHH
Confidence            44444444444333211   1223444444455554445555555554444433321000                    


Q ss_pred             -------------HHhhHHHHHHHHhcC-CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150          219 -------------LSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN  284 (412)
Q Consensus       219 -------------~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  284 (412)
                                   -...+++.+.+.+.+ .+..+|..++..++.++......  .+..++.+++++......+...++..
T Consensus       323 ~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~  400 (526)
T PF01602_consen  323 KALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINV  400 (526)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHH
T ss_pred             HHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHH
Confidence                         012344444444432 25556666666666666555321  23455556666666555666666666


Q ss_pred             HHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccch-hHHHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150          285 VKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKV  362 (412)
Q Consensus       285 l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~vR~~~~~~  362 (412)
                      +..++.....  .....+..+.+.+.+ .+...+..+++.+|..++.... + ....++..+.+.+.+..+.||..++.+
T Consensus       401 i~~ll~~~~~--~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~  477 (526)
T PF01602_consen  401 IRDLLSNNPE--LREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTA  477 (526)
T ss_dssp             HHHHHHHSTT--THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHhhcChh--hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            6666554322  133456666666665 4567899999999999887765 3 456777788888888888999999999


Q ss_pred             HHHHhhhhchHHHHhhHHHHHHhhcC--CCCccHHHHHHHHHHHhH
Q 015150          363 LQSLIPIVDQSVVEKSIRPCLVELSE--DPDVDVRFFATQALQSKD  406 (412)
Q Consensus       363 l~~l~~~~~~~~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~~~~  406 (412)
                      +.++....+.....+.+.+.+..+.+  +.+.+||..|..-+.-+-
T Consensus       478 ~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~  523 (526)
T PF01602_consen  478 LAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLN  523 (526)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence            99999876654455688889988877  889999999998776553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=5.9e-18  Score=150.24  Aligned_cols=378  Identities=17%  Similarity=0.169  Sum_probs=285.3

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhh-hhhhHHHHHhhccCCC
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC-VAHILPVIVNFSQDKS   79 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~~l~~~l~~l~~d~~   79 (412)
                      ++.+|+++..++..+...... .-...+.+.+.++++......|..+...+..+....+-+.. ...++..+....+|..
T Consensus       109 s~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~  187 (569)
T KOG1242|consen  109 SKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKK  187 (569)
T ss_pred             cHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccc
Confidence            467899999999988876543 33455777777778888888899999999888887665433 3447777788888865


Q ss_pred             hH-HHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCC
Q 015150           80 WR-VRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS  156 (412)
Q Consensus        80 ~~-vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~  156 (412)
                      .. .|+.+..+.......++...  +.-.++|.+.....|....||.+|..+...+...++..-... ++|.+...+.+.
T Consensus       188 ~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-llpsll~~l~~~  266 (569)
T KOG1242|consen  188 SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-LLPSLLGSLLEA  266 (569)
T ss_pred             hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-hhhhhHHHHHHH
Confidence            54 45556667777777777432  334577788888899999999999999999988887765543 455555544445


Q ss_pred             cHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCC
Q 015150          157 SQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  234 (412)
Q Consensus       157 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~  234 (412)
                      .|+-+.++++.++.++...++.  .....++|.+.+.+.|..++||.++..++..++..+....+ ..++|.+.+.+.|+
T Consensus       267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l~dp  345 (569)
T KOG1242|consen  267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDALADP  345 (569)
T ss_pred             hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHhcCc
Confidence            9999999999999888665543  33478999999999999999999999999999998876665 78899999999998


Q ss_pred             CchHHHHHHHHhhH--HHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC-hh---hhhhhhHHHHHhh
Q 015150          235 HWRVRLAIIEYIPL--LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG-PD---WAMQHIVPQVLEM  308 (412)
Q Consensus       235 ~~~vr~~~~~~l~~--l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~---~~~~~~l~~l~~~  308 (412)
                      ..++.... ..++.  ++..... .....++|++.+.+.+.+...++.++..++.++.... +.   .+...++|.+...
T Consensus       346 ~~~~~e~~-~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~  423 (569)
T KOG1242|consen  346 SCYTPECL-DSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKEN  423 (569)
T ss_pred             ccchHHHH-Hhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHH
Confidence            86655432 22211  1111111 2346689999999999999999999999999998773 32   2456788888888


Q ss_pred             hcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc-hHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh
Q 015150          309 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE  385 (412)
Q Consensus       309 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~-~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~  385 (412)
                      +.++.+.+|..+.++++.+.+..|...+ +...|.+.+.+++... .-|..+++.++.....++.+.+.+ ++|.+..
T Consensus       424 ~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~-~~~~~~a  499 (569)
T KOG1242|consen  424 LDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVED-ILPEILA  499 (569)
T ss_pred             hcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHH-HHHHHHH
Confidence            8899899999999999999999998866 8899999998876543 347888888988888777765543 4444333

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.84  E-value=2.3e-18  Score=151.52  Aligned_cols=393  Identities=19%  Similarity=0.236  Sum_probs=274.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCchh--hhhhhHHHHHhhccCC
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQD--CVAHILPVIVNFSQDK   78 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~l~~d~   78 (412)
                      +-||....++.+.+++.++-++    ++|++..++.+. +..-|..++++...++..++-..  ....++..+.+++.|.
T Consensus       295 eYVRnvt~ra~~vva~algv~~----llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~  370 (975)
T COG5181         295 EYVRNVTGRAVGVVADALGVEE----LLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDR  370 (975)
T ss_pred             HHHHHHHHHHHHHHHHhhCcHH----HHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhcc
Confidence            4589999999999998877544    889998888877 56678899999999998877653  3455788888999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcc--cc------------------------------------------hHHHHHHhc
Q 015150           79 SWRVRYMVANQLYELCEAVGPEPTR--SD------------------------------------------VVPAYVRLL  114 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~~~~~--~~------------------------------------------l~~~l~~~l  114 (412)
                      +..||..++.+++.+++..++-...  +.                                          ....+.+.+
T Consensus       371 ~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref  450 (975)
T COG5181         371 SRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREF  450 (975)
T ss_pred             ceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHh
Confidence            9999999999999999988854321  00                                          111122222


Q ss_pred             CCChHHHHHHHHHHH---------------------------------------------HHHHHhhCH-----------
Q 015150          115 RDNEAEVRIAAAGKV---------------------------------------------TKICRILNP-----------  138 (412)
Q Consensus       115 ~d~~~~vr~~a~~~l---------------------------------------------~~l~~~~~~-----------  138 (412)
                      +.++.+.+.......                                             ..+++..+.           
T Consensus       451 ~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~  530 (975)
T COG5181         451 KSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYY  530 (975)
T ss_pred             CCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhc
Confidence            222221111110000                                             000000000           


Q ss_pred             --------------------------------------------------------------------HHHHHhhhhhHH
Q 015150          139 --------------------------------------------------------------------ELAIQHILPCVK  150 (412)
Q Consensus       139 --------------------------------------------------------------------~~~~~~~~~~l~  150 (412)
                                                                                          .++...++..++
T Consensus       531 ~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL  610 (975)
T COG5181         531 SDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTIL  610 (975)
T ss_pred             cCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHH
Confidence                                                                                011222334445


Q ss_pred             HhccCCcHHHHHHHHHHHHhcCcc---cChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH---HhhHH
Q 015150          151 ELSSDSSQHVRSALATVIMGMAPI---LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLL  224 (412)
Q Consensus       151 ~~~~d~~~~vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~---~~~~~  224 (412)
                      +++.++.+.||..++..++.++..   .|.......+-..+.+-+..+.++|-...++++..+....+-...   ...++
T Consensus       611 ~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~il  690 (975)
T COG5181         611 KLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGIL  690 (975)
T ss_pred             HHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcc
Confidence            556666666666666655555433   344433445555556666666677666666666666555443321   24677


Q ss_pred             HHHHHHhcCCCchHHHHHHHHhhHHHhhhC----hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhh
Q 015150          225 PAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH  300 (412)
Q Consensus       225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  300 (412)
                      |.+...+.++..++....+..++.++...+    ...+.. +.--++.+|..-+.++|.+|..++|-+.+.+|+.    .
T Consensus       691 P~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR-IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----d  765 (975)
T COG5181         691 PSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR-ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ----D  765 (975)
T ss_pred             ccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH-HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----H
Confidence            888888888888898888888888876543    222322 2222455678889999999999999999999985    4


Q ss_pred             hHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhh
Q 015150          301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKS  378 (412)
Q Consensus       301 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~  378 (412)
                      ++..+++.++....+.|.+..-+++.+++.+|.-    .++|.+..-...|+.+|...+++++..+++..|..  .+.-.
T Consensus       766 vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~  841 (975)
T COG5181         766 VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYS  841 (975)
T ss_pred             HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888889999999999999988875    57899998888999999999999999999988875  45568


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          379 IRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       379 i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +.|.+.-.++|.|+-.|+.++..+..+.-
T Consensus       842 itPlleDAltDrD~vhRqta~nvI~Hl~L  870 (975)
T COG5181         842 ITPLLEDALTDRDPVHRQTAMNVIRHLVL  870 (975)
T ss_pred             hhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence            99999999999999999999998887754

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.84  E-value=2.5e-17  Score=147.82  Aligned_cols=383  Identities=16%  Similarity=0.167  Sum_probs=248.2

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch----hhhhhhHHHHHhhccCCChHHHHHHHH
Q 015150           13 GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVAN   88 (412)
Q Consensus        13 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~l~~d~~~~vR~~~~~   88 (412)
                      -.++..++.......++.    -+.|+.+..|.+.+.....+...++..    .....++.-++..+++.+.... ..+.
T Consensus       706 v~ia~KvG~~~~v~R~v~----~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~  780 (1172)
T KOG0213|consen  706 VEIAAKVGSDPIVSRVVL----DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLL  780 (1172)
T ss_pred             HHHHHHhCchHHHHHHhh----hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhh
Confidence            345555554443333332    367888889999999999999887763    3344466656555554333333 5677


Q ss_pred             HHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHH---hhCHHHHHHhhhhhHHHhccCCcHHHHHH
Q 015150           89 QLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQHVRSA  163 (412)
Q Consensus        89 ~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~~~d~~~~vr~~  163 (412)
                      .++.++..++.  ..+.+++...+...++++.+.||..|+..++.++.   .++++..+.++--.+.+.+....++|--.
T Consensus       781 gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgs  860 (1172)
T KOG0213|consen  781 GFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGS  860 (1172)
T ss_pred             hHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHH
Confidence            88888888876  55667888888999999999999999999988765   45677777777778888888889999988


Q ss_pred             HHHHHHhcCcccChhHH---HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc----hhhHHhhHHHHHHHHhcCCCc
Q 015150          164 LATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHW  236 (412)
Q Consensus       164 ~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~----~~~~~~~~~~~l~~~~~d~~~  236 (412)
                      +..++..|....|-...   .+.++|.+...+++.+.-|+.+++..++.|+..-.    ..++ -.+.--++++++..+.
T Consensus       861 ILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW-MRIcfeLlelLkahkK  939 (1172)
T KOG0213|consen  861 ILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW-MRICFELLELLKAHKK  939 (1172)
T ss_pred             HHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHHHH
Confidence            88888877766543221   36889999999999999999999999999986632    2233 2344456677788888


Q ss_pred             hHHHHHHHHhhHHHhhhChhhHHHHH-------------------------------HHHHHHHhcCchhHHHHHHHHHH
Q 015150          237 RVRLAIIEYIPLLASQLGVGFFDDKL-------------------------------GALCMQWLKDKVYSIRDAAANNV  285 (412)
Q Consensus       237 ~vr~~~~~~l~~l~~~~~~~~~~~~l-------------------------------~~~l~~~l~d~~~~vr~~a~~~l  285 (412)
                      .+|+++...++.+++.+|++.....+                               +|.+++--.-++..|+...++++
T Consensus       940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen  940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred             HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence            99999999999999999986433222                               23333333344555555555555


Q ss_pred             HHHHHHhChh--hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc---ccchhHHHHhhHHHHHhhcCCCCchHHHHHH
Q 015150          286 KRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP---VMGSEITCSQLLPVVINASKDRVPNIKFNVA  360 (412)
Q Consensus       286 ~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~  360 (412)
                      .-+.+..|+-  .+...+.|.+...+.|.+...|+.++.++..++-   .+|.+...-+++..+....-+++|.|-.+..
T Consensus      1020 sf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~ 1099 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFD 1099 (1172)
T ss_pred             HHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHH
Confidence            5555554431  1233455555555555555556666665555542   2233344445555555555555555555555


Q ss_pred             HHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150          361 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK  405 (412)
Q Consensus       361 ~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  405 (412)
                      .++..+...+|+..+.++    +.+-+-+|...||..-...+..+
T Consensus      1100 e~~eg~r~~Lg~~~~~~Y----~~QGLFHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1100 EAMEGLRVALGPQAMLKY----CLQGLFHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred             HHHHHHHHHhchHHHHHH----HHHhccCcHHHHHHHHHHHHHhH
Confidence            555555555555333222    22323345555555555444443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.83  E-value=4.5e-17  Score=154.22  Aligned_cols=366  Identities=19%  Similarity=0.232  Sum_probs=249.5

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS  104 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~  104 (412)
                      .-.+.+.+.+-++++++.+|..|++.++.+.    ..+..+.+.+.+.+++.|+++.||+.|+.++.++....++.....
T Consensus        77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~  152 (526)
T PF01602_consen   77 LILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE  152 (526)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH
Confidence            4446677777788999999999999999887    334677899999999999999999999999999998754433223


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHH
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI  181 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  181 (412)
                       +++.+.+++.|+++.|+.+|+.++..+  ...++   .....+...+.+.+.+.++..+..+++.+..++..-......
T Consensus       153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~  229 (526)
T PF01602_consen  153 -LIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK  229 (526)
T ss_dssp             -HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH
T ss_pred             -HHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH
Confidence             899999999999999999999999988  22333   234445566666668899999999999999887543332211


Q ss_pred             HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH
Q 015150          182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  261 (412)
Q Consensus       182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  261 (412)
                      ..+++.+..++++.++.|+..+++.+..+...   ......+.+.+..++.++++.+|..++..+..++....+...  .
T Consensus       230 ~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~  304 (526)
T PF01602_consen  230 NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--N  304 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--T
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--h
Confidence            56788888888888899998888888766543   224577889999999999999999999999888776533222  2


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchhH--H--
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEI--T--  336 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~--~--  336 (412)
                      ....+..+..|++..+|..++..+..++..-.    ...+++.+.+.+.+ .+..+|..++..++.++..+....  +  
T Consensus       305 ~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n----~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~  380 (526)
T PF01602_consen  305 QSLILFFLLYDDDPSIRKKALDLLYKLANESN----VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVD  380 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHH
T ss_pred             hhhhhheecCCCChhHHHHHHHHHhhcccccc----hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHH
Confidence            22233344458888999999988888775332    34477777777743 366688888888888775553320  0  


Q ss_pred             -------------------------------HHhhHHHHHhhcCC-CCchHHHHHHHHHHHHhhhhch-HHHHhhHHHHH
Q 015150          337 -------------------------------CSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCL  383 (412)
Q Consensus       337 -------------------------------~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~~-~~~~~~i~~~l  383 (412)
                                                     ...++..+...+.+ ..+.++..+++.+|+.+...+. . ....++..+
T Consensus       381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l  459 (526)
T PF01602_consen  381 TLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSL  459 (526)
T ss_dssp             HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHH
T ss_pred             HHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHH
Confidence                                           12233334444333 3344555555555555544433 2 333444444


Q ss_pred             HhhcCCCCccHHHHHHHHHHHhHH
Q 015150          384 VELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       384 ~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      .....+.+.+||.....++.++..
T Consensus       460 ~~~~~~~~~~vk~~ilt~~~Kl~~  483 (526)
T PF01602_consen  460 IENFIEESPEVKLQILTALAKLFK  483 (526)
T ss_dssp             HHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccccHHHHHHHHHHHHHHHh
Confidence            444445555555555555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.83  E-value=5.3e-17  Score=141.55  Aligned_cols=367  Identities=16%  Similarity=0.217  Sum_probs=285.0

Q ss_pred             HHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhccCC
Q 015150            5 RRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK   78 (412)
Q Consensus         5 R~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~d~   78 (412)
                      |++++..+.++.+.+-.    +.+...+-.+...+..+.+...|+.+..++..++-.++.+  .+...++|.+...++|+
T Consensus        17 RKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~   96 (675)
T KOG0212|consen   17 RKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQ   96 (675)
T ss_pred             HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCc
Confidence            78888889988886432    2333333346677778888888888887777776666653  36777899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HHHHhhhhhHHHh
Q 015150           79 SWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKEL  152 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~  152 (412)
                      +.+||..+|+.+-+++.....+.  +.++++..+.++..|.+..||.+| +.+..+.+-+..+    ...+.++|.+...
T Consensus        97 d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~er  175 (675)
T KOG0212|consen   97 DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRER  175 (675)
T ss_pred             cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence            99999999999999998776554  457889999999999999998765 5555555433221    2346689999999


Q ss_pred             ccCCcHHHHHHHHHHHHhcCcccChhHH--HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch--hh-HHhhHHHHH
Q 015150          153 SSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DL-LSQSLLPAI  227 (412)
Q Consensus       153 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~--~~-~~~~~~~~l  227 (412)
                      +.+.++..|...+.++..+-...+-+.+  ...+++.+.+++.|+.++||.-+-..++.+...+..  .. -.+..++.+
T Consensus       176 iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vl  255 (675)
T KOG0212|consen  176 IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVL  255 (675)
T ss_pred             HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhc
Confidence            9999999999999999887655544432  367889999999999999999888888888777642  22 235677888


Q ss_pred             HHHhcCCCchHHHHHHHHhhHHHhhhChhhH--HHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHhChhh-----hhh
Q 015150          228 VELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW-----AMQ  299 (412)
Q Consensus       228 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~-----~~~  299 (412)
                      ..-+.++++.++..++.++..+.+..|...+  ...++..++.++.|... .++..+...=+.+.+.++.+.     -..
T Consensus       256 v~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~  335 (675)
T KOG0212|consen  256 VPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYG  335 (675)
T ss_pred             cccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchH
Confidence            8888899999999999999999998887653  34566666777777766 577777666555555554332     234


Q ss_pred             hhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150          300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       300 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  372 (412)
                      .++..+.+.+.+.....|.+++..+..+-...+.+  .+...+.+.+++.+.|++..|-..++..+..++..-..
T Consensus       336 ~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  336 SIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            68888999999999999999999999998888776  36778999999999999999999999999999865443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.82  E-value=5.4e-16  Score=142.83  Aligned_cols=410  Identities=16%  Similarity=0.215  Sum_probs=280.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-------hhhhhhhHHHHHh
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-------QDCVAHILPVIVN   73 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-------~~~~~~l~~~l~~   73 (412)
                      +++|++-|++|+|.++++++++++...+-.+...++...+ ..|..+.-.+..+...++|       ....+.+.|.+.+
T Consensus        60 ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~ke-q~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~  138 (1233)
T KOG1824|consen   60 NGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKE-QLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQ  138 (1233)
T ss_pred             CcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchh-hhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHH
Confidence            3789999999999999999887766655556555565554 4566555555555555554       1233456666665


Q ss_pred             hc--cCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhH
Q 015150           74 FS--QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV  149 (412)
Q Consensus        74 l~--~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  149 (412)
                      ..  +.+...++-.++..++.+...+|.-.  +..-++..+.--+..+...||+.|+.+++.++..++.+.+...+-..+
T Consensus       139 ~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll  218 (1233)
T KOG1824|consen  139 AISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLL  218 (1233)
T ss_pred             HhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            53  24556689999999988887776432  334566666667788889999999999999999998887765444444


Q ss_pred             HHhccCCcHHHHHHHHHHHHhcCcccChhHH--HHhhHHHHHHhh---cccChHHHHHHHHHHHHHHHhhchhhH--Hhh
Q 015150          150 KELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLL--SQS  222 (412)
Q Consensus       150 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l---~d~~~~vr~~~~~~l~~i~~~~~~~~~--~~~  222 (412)
                      ..+.+..+...-+..+++++.++...|.+..  ...++|.+.+.+   +.++++.|...+++++.+....+.+..  .+.
T Consensus       219 ~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pe  298 (1233)
T KOG1824|consen  219 KGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPE  298 (1233)
T ss_pred             hccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchH
Confidence            4455445554555577888888877766543  367889998888   667899999999999999877654321  222


Q ss_pred             HHHHHHHHh----------------------------------cCCCchHHHHHHHHhhHHHhhhCh--hhHHHHHHHHH
Q 015150          223 LLPAIVELA----------------------------------EDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALC  266 (412)
Q Consensus       223 ~~~~l~~~~----------------------------------~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l  266 (412)
                      ++....+.+                                  +|-+|+||+++++++..+......  ..+.+.+.|.+
T Consensus       299 i~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~l  378 (1233)
T KOG1824|consen  299 IINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPAL  378 (1233)
T ss_pred             HHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHH
Confidence            222222210                                  122599999999999887654321  23556678888


Q ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHhCh----------------h---h-------------------------------
Q 015150          267 MQWLKDKVYSIRDAAANNVKRLAEEFGP----------------D---W-------------------------------  296 (412)
Q Consensus       267 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------------~---~-------------------------------  296 (412)
                      +..+++....|+...+.++-.+....++                .   +                               
T Consensus       379 I~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~l  458 (1233)
T KOG1824|consen  379 ISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLL  458 (1233)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHH
Confidence            8888888888888877776666554321                0   0                               


Q ss_pred             --------------hhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchhHH---HHhhHHHHHhhcCCCCchHHH
Q 015150          297 --------------AMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINASKDRVPNIKF  357 (412)
Q Consensus       297 --------------~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~---~~~il~~l~~~l~d~~~~vR~  357 (412)
                                    ....++|.+...++|.+  ...+..++-.+..+....+++.|   ...+.|.+.....|+.+.+-.
T Consensus       459 L~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisa  538 (1233)
T KOG1824|consen  459 LTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISA  538 (1233)
T ss_pred             HHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhH
Confidence                          01124444444555544  44566666666555555666533   445777888889999999999


Q ss_pred             HHHHHHHHHhhhhch---------HHHHhhHHHHHHh-h-cCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          358 NVAKVLQSLIPIVDQ---------SVVEKSIRPCLVE-L-SEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       358 ~~~~~l~~l~~~~~~---------~~~~~~i~~~l~~-l-~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      .++.+...+.+.+.+         ..+...+.....+ + .+|.|.+||.+|+.+++.+...+|+
T Consensus       539 EAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD  603 (1233)
T KOG1824|consen  539 EALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD  603 (1233)
T ss_pred             HHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh
Confidence            999988888765433         2334445554444 2 6899999999999999999998885

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.81  E-value=4.1e-18  Score=160.22  Aligned_cols=309  Identities=19%  Similarity=0.236  Sum_probs=228.3

Q ss_pred             HHHHHHHhccC-CchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC------CC
Q 015150           28 IMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG------PE  100 (412)
Q Consensus        28 l~~~l~~l~~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~------~~  100 (412)
                      +++++...+.. .....|..|++.+..++.+..++.....++|++..+.+|+...||..++..|..+.....      ..
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan  502 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN  502 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence            33444444332 234567788888888888888888888899999999999999999988888888766543      22


Q ss_pred             CcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHH--hccCCcHHHHHHHHHHHHhcCcccCh
Q 015150          101 PTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE--LSSDSSQHVRSALATVIMGMAPILGK  177 (412)
Q Consensus       101 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~--~~~d~~~~vr~~~~~~l~~l~~~~~~  177 (412)
                      .+.++++|.+..++.| ....||.+-+.+|+.+++....-  .+ .-..+..  +.+|++.+          ...+..+.
T Consensus       503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF--le-~~q~~~~~g~~n~~nse----------t~~~~~~~  569 (1431)
T KOG1240|consen  503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF--LE-LTQELRQAGMLNDPNSE----------TAPEQNYN  569 (1431)
T ss_pred             hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH--HH-HHHHHHhcccccCcccc----------cccccccc
Confidence            3567888999888888 66788888888888887743211  00 0001111  12333332          00000000


Q ss_pred             ---hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC
Q 015150          178 ---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  254 (412)
Q Consensus       178 ---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  254 (412)
                         ......+-..+..++.|+++.||.+.++++..++..+|.+.-.+.+++++..+++|++|+.|.++.+.+..++-..|
T Consensus       570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG  649 (1431)
T KOG1240|consen  570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG  649 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence               11112334566778999999999999999999999999887777899999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC-hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150          255 VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG-PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       255 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      .....+.++|++.+.|.|....|-..|+.++..+++.-- .+....+++..+..++.+|+..+|.+++..+..+...++.
T Consensus       650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~  729 (1431)
T KOG1240|consen  650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA  729 (1431)
T ss_pred             eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence            888889999999999999999999999999999987421 1223456777788889999988999999999999888887


Q ss_pred             hHHHHhhHHHHHhhcC
Q 015150          334 EITCSQLLPVVINASK  349 (412)
Q Consensus       334 ~~~~~~il~~l~~~l~  349 (412)
                      -...-.++|.+-.++.
T Consensus       730 advyc~l~P~irpfl~  745 (1431)
T KOG1240|consen  730 ADVYCKLMPLIRPFLE  745 (1431)
T ss_pred             hhheEEeehhhHHhhh
Confidence            6555556665554444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=2.4e-17  Score=143.68  Aligned_cols=376  Identities=17%  Similarity=0.171  Sum_probs=286.9

Q ss_pred             HHHhccCCchHHHHHHHHhHHHHhhccCchh---hhhhhHH-HHHhhccCCChHHHHHHHHHHHHHHHHhCCCC--cccc
Q 015150           32 FEELTQDDQDSVRLLAVEGCGALGKLLEPQD---CVAHILP-VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSD  105 (412)
Q Consensus        32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~-~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~  105 (412)
                      +.+-+.|+-.+-|++|+.-+..+.+.+-...   ....++. +...+...++..-|+.+...++..+-.+|.+.  +...
T Consensus         5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~   84 (675)
T KOG0212|consen    5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK   84 (675)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence            3445778888889999999999888754322   2222333 55566677788888899888888877777554  4567


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc----ChhH
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----GKDA  179 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~~  179 (412)
                      ++|.+..+++|.+..||..|++.+..+++....+  .+.+.++..+.++..|++..||..+ +.+..+....    ....
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tF  163 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTF  163 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccccccc
Confidence            8999999999999999999999999999987665  4567788899999999999998854 5555444322    1123


Q ss_pred             HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh--HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--h
Q 015150          180 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V  255 (412)
Q Consensus       180 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~  255 (412)
                      ..+.++|.+..-+.+.++.+|...++.+..+-..-+.+.  +.+.+++.+.+++.|++..||..+-.+++.+...+.  +
T Consensus       164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P  243 (675)
T KOG0212|consen  164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP  243 (675)
T ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence            346889999999999999999999988887755544333  357789999999999999999887777777665542  2


Q ss_pred             hh-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh--hhhhHHHHHhhhcCCch-HHHHHHHHHHHHhcccc
Q 015150          256 GF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVM  331 (412)
Q Consensus       256 ~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~l~~l~~~~~~~~~-~~r~~~~~~l~~l~~~~  331 (412)
                      .. -.+...+++...+..+++.++..|+..+.++++..|.+.+  ...++..++..+.++.. .++..+...-+.+...+
T Consensus       244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~  323 (675)
T KOG0212|consen  244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV  323 (675)
T ss_pred             cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence            22 2355788888889999999999999999999987776643  24566666666666655 36666655544454444


Q ss_pred             chh-----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH--HHhhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 015150          332 GSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDVDVRFFATQALQS  404 (412)
Q Consensus       332 ~~~-----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  404 (412)
                      +.+     .-...++..+.+.+.+.....|.++++++..+....+.+.  +.+.+.+.|.+.++|++.+|-..+.+.+..
T Consensus       324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~  403 (675)
T KOG0212|consen  324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS  403 (675)
T ss_pred             hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence            432     2345789999999999999999999999999999888873  557899999999999999999999988888


Q ss_pred             hHHh
Q 015150          405 KDQV  408 (412)
Q Consensus       405 ~~~~  408 (412)
                      ++..
T Consensus       404 i~~s  407 (675)
T KOG0212|consen  404 ICSS  407 (675)
T ss_pred             HhcC
Confidence            8763

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.80  E-value=2.8e-16  Score=159.62  Aligned_cols=375  Identities=13%  Similarity=0.133  Sum_probs=285.7

Q ss_pred             HHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC---CC
Q 015150           28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EP  101 (412)
Q Consensus        28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~  101 (412)
                      ..+.+..++...+.+++..++.++..++..-..   .......+|.+.+++.+++..+|..++..++.++.....   ..
T Consensus       405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI  484 (2102)
T PLN03200        405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI  484 (2102)
T ss_pred             chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            345566667777788999999999998866322   122344788999999999999999999999998752221   11


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH--HHH-HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh
Q 015150          102 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD  178 (412)
Q Consensus       102 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  178 (412)
                      .....+|.+.+++.+++..+|+.|+.+++.++..-.+  ..+ ....+|.+.+++++.++.++..+++++..+...-.. 
T Consensus       485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-  563 (2102)
T PLN03200        485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-  563 (2102)
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-
Confidence            2346899999999999999999999999999874211  122 346889999999999999999999999998753222 


Q ss_pred             HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH------HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150          179 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  252 (412)
Q Consensus       179 ~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  252 (412)
                          ..++.+..++..+++.++..++..++.+....+.+..      ....+|.+.+++++++.+++..++..+..++..
T Consensus       564 ----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~  639 (2102)
T PLN03200        564 ----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS  639 (2102)
T ss_pred             ----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence                2346677778777888999899999888765543321      235789999999999999999999999888764


Q ss_pred             hCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh----hhhhhHHHHHhhhcCCchHHHHHHHHHHH
Q 015150          253 LGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAIS  325 (412)
Q Consensus       253 ~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~~~~~~~~~r~~~~~~l~  325 (412)
                      ...   .......+|.++.++++.+.++++.++.+|+.+......+.    .....+|.|.+++++++..+++.++.++.
T Consensus       640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALa  719 (2102)
T PLN03200        640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALA  719 (2102)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence            322   22345568888999999999999999999999986433221    23458899999999999999999999999


Q ss_pred             Hhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH-H-----HhhHHHHHHhhcCCCCccHHHH
Q 015150          326 LLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV-V-----EKSIRPCLVELSEDPDVDVRFF  397 (412)
Q Consensus       326 ~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~-~-----~~~i~~~l~~l~~d~~~~vr~~  397 (412)
                      .++..-...  ......+|.+..++++.++++|..++++|..++.....+. +     ....+..|..+++-.|.+.-..
T Consensus       720 nLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~  799 (2102)
T PLN03200        720 NLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSAT  799 (2102)
T ss_pred             HHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhH
Confidence            998654322  3446789999999999999999999999999988766433 2     2345566666666677766555


Q ss_pred             --HHHHHHHhHH
Q 015150          398 --ATQALQSKDQ  407 (412)
Q Consensus       398 --a~~al~~~~~  407 (412)
                        +..++..+++
T Consensus       800 ~~al~~l~~l~~  811 (2102)
T PLN03200        800 SEALEALALLAR  811 (2102)
T ss_pred             HHHHHHHHHHHh
Confidence              7788777766

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.79  E-value=3.6e-16  Score=158.79  Aligned_cols=401  Identities=13%  Similarity=0.089  Sum_probs=298.4

Q ss_pred             chhHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhc
Q 015150            2 PMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFS   75 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~   75 (412)
                      +.+|..++.++..++..-.   ........+|.+.+++.++++.++..|+..++.++.....   .......+|.+.+++
T Consensus       418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL  497 (2102)
T PLN03200        418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL  497 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence            4577888888888775311   1122333678888889988889999999999999875432   122355899999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHhCC--CCc-ccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHh
Q 015150           76 QDKSWRVRYMVANQLYELCEAVGP--EPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL  152 (412)
Q Consensus        76 ~d~~~~vR~~~~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  152 (412)
                      .+++..+|+.++-+|++++..-.+  ... ....+|.+.+++++.++.++..|+.+|..+......+     .++.+..+
T Consensus       498 ~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~L  572 (2102)
T PLN03200        498 ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTAL  572 (2102)
T ss_pred             cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHH
Confidence            999999999999999999863110  011 2357889999999999999999999999998765444     33556677


Q ss_pred             ccCCcHHHHHHHHHHHHhcCcccChhHH------HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhH
Q 015150          153 SSDSSQHVRSALATVIMGMAPILGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSL  223 (412)
Q Consensus       153 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~  223 (412)
                      +..+++.++..++..++.+......+..      ...-+|.+.++++.+++.+++.|+..+..++..-..   .......
T Consensus       573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga  652 (2102)
T PLN03200        573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI  652 (2102)
T ss_pred             hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence            7777788888888888887654433221      235789999999999999999999999998764221   1234567


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--hhh
Q 015150          224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWA  297 (412)
Q Consensus       224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~  297 (412)
                      +|.+..++.+.+..++..++.++..+........    .....+|.+.+++++.+..++..|+.+|..++..-..  +..
T Consensus       653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~  732 (2102)
T PLN03200        653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL  732 (2102)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence            8889999999999999999999999987443221    2244688899999999999999999999999875432  223


Q ss_pred             hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH------HHHhhHHHHHhhcCCCCchHHHH--HHHHHHHHhhh
Q 015150          298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI------TCSQLLPVVINASKDRVPNIKFN--VAKVLQSLIPI  369 (412)
Q Consensus       298 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~------~~~~il~~l~~~l~d~~~~vR~~--~~~~l~~l~~~  369 (412)
                      ....++.+.+++++.+...|+.++.++..++...+.+.      -....+..+..+|+..+.+.-..  ++.++..+++.
T Consensus       733 ~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~  812 (2102)
T PLN03200        733 AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART  812 (2102)
T ss_pred             hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence            46778999999999999999999999999998887554      12345667777887776666655  88888888764


Q ss_pred             hch------HHH-H---hhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          370 VDQ------SVV-E---KSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       370 ~~~------~~~-~---~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      -+.      .+. .   ..=+..|..++.+..+.+...|.+.+..+++
T Consensus       813 ~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~  860 (2102)
T PLN03200        813 KGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCR  860 (2102)
T ss_pred             cccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            211      111 1   1223334344488999999999999998875

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.79  E-value=2e-16  Score=139.46  Aligned_cols=375  Identities=16%  Similarity=0.180  Sum_probs=254.4

Q ss_pred             HHHHHHHhccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC--CCC
Q 015150           28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP  101 (412)
Q Consensus        28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--~~~  101 (412)
                      +..-+.+..+|+.+..|.+++.....+...++.    +.....++.-++..+++.+..+. ....+++.+....+  -..
T Consensus       522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp  600 (975)
T COG5181         522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKP  600 (975)
T ss_pred             HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCc
Confidence            334444558888888999998888888877765    33445566666655554433222 12233333322222  223


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHHHHHHHH---hhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh
Q 015150          102 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD  178 (412)
Q Consensus       102 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  178 (412)
                      +...++..+...++++.+.||..|+...+.+++   .+++.....++-..+.+.+....++|--.+..++..+....+-.
T Consensus       601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence            456788888899999999999999998887765   45666666777777778888888999888888887776544332


Q ss_pred             H---HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc----hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150          179 A---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  251 (412)
Q Consensus       179 ~---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~----~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  251 (412)
                      .   -...++|.+...+++.+..|..+.+..++.++...+    ..++ -.+.--+.+.+++.+..+|+++.+.++.+++
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW-MRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW-MRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            1   135788999999999999999999999999986533    3333 2344456677888888999999999999999


Q ss_pred             hhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcccc
Q 015150          252 QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM  331 (412)
Q Consensus       252 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~  331 (412)
                      .+|++.    ++..+++.|+-.+..-|....-+++-+.+..|+-    .++|.++.-+..++..+....+.++..+-+..
T Consensus       760 aiGPqd----vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyi  831 (975)
T COG5181         760 AIGPQD----VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYI  831 (975)
T ss_pred             hcCHHH----HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHH
Confidence            999864    4445555566565666666666666666666542    36677777666677667777777766666555


Q ss_pred             chh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh---hchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          332 GSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI---VDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       332 ~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~---~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      |..  .|.-.+.|.+-..+.|.++.-|+.+...+.+++-.   .|.+...-.++..+..-.-++.+.|.+...++++.+.
T Consensus       832 g~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~  911 (975)
T COG5181         832 GQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFA  911 (975)
T ss_pred             HHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHH
Confidence            543  35556777777777777777777777777776533   3333333445555555556777777777777777777


Q ss_pred             HhhhCC
Q 015150          407 QVMMSG  412 (412)
Q Consensus       407 ~~~~~~  412 (412)
                      .++|+|
T Consensus       912 ~~lg~g  917 (975)
T COG5181         912 TVLGSG  917 (975)
T ss_pred             HHhccH
Confidence            777654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.79  E-value=2.5e-15  Score=138.52  Aligned_cols=402  Identities=15%  Similarity=0.199  Sum_probs=271.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhc---cC
Q 015150            3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFS---QD   77 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~---~d   77 (412)
                      .||++++-+++.++...+.+.+...+-.++..+-+..+...-+.-+++++.+++..+..  .....+.|++.+++   +.
T Consensus       189 aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~  268 (1233)
T KOG1824|consen  189 AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEE  268 (1233)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccccc
Confidence            68999999999999988776666656666666666666555555678999999887663  34567999999998   66


Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcC----------------------------------CChHHH
Q 015150           78 KSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLR----------------------------------DNEAEV  121 (412)
Q Consensus        78 ~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~----------------------------------d~~~~v  121 (412)
                      .+.+.|+.++++++.+.+.++.+.  ++++++..+.+.+.                                  |-.|.|
T Consensus       269 ~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkV  348 (1233)
T KOG1824|consen  269 DDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKV  348 (1233)
T ss_pred             CcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHH
Confidence            789999999999999999887654  45666666665441                                  113899


Q ss_pred             HHHHHHHHHHHHHhhCH--HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC----------------hh---HH
Q 015150          122 RIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----------------KD---AT  180 (412)
Q Consensus       122 r~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----------------~~---~~  180 (412)
                      |.+|++++..+...-.+  ..+.+.+-|.+..-+++.++.|+.-+..++..+....+                ..   ..
T Consensus       349 RRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~  428 (1233)
T KOG1824|consen  349 RRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSM  428 (1233)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHH
Confidence            99999999887653322  13455566777777777777777766665554332110                00   00


Q ss_pred             H----HhhHHHHHHhhcccChHHHHHHHHHH-------------------------------------------HHHHHh
Q 015150          181 I----EQLLPIFLSLLKDEFPDVRLNIISKL-------------------------------------------DQVNQV  213 (412)
Q Consensus       181 ~----~~l~~~l~~~l~d~~~~vr~~~~~~l-------------------------------------------~~i~~~  213 (412)
                      .    ..++..+.+.+++.+-..|..+...|                                           ......
T Consensus       429 L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s  508 (1233)
T KOG1824|consen  429 LSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALIS  508 (1233)
T ss_pred             HHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhc
Confidence            0    11222222222222222333333333                                           333222


Q ss_pred             hchhhH---HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---------hhHHHHHHHHHHHHh--cCchhHHHH
Q 015150          214 IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--KDKVYSIRD  279 (412)
Q Consensus       214 ~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~  279 (412)
                      -+++.+   .+.+.|.+.....|+.+++-..++-....+.+.+-+         ..+...+....++.|  +|.+.+||+
T Consensus       509 ~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVke  588 (1233)
T KOG1824|consen  509 HPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKE  588 (1233)
T ss_pred             CChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHH
Confidence            233332   233455666677888888888888888877776521         223334455555554  478899999


Q ss_pred             HHHHHHHHHHHHhChhhh---hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccc---cchhHHHHhhHHHHHhhcCCCCc
Q 015150          280 AAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSEITCSQLLPVVINASKDRVP  353 (412)
Q Consensus       280 ~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~---~~~~~~~~~il~~l~~~l~d~~~  353 (412)
                      .|+.+++.++..+|. +.   ....+|.+.+.++  +...|.+++.++..++..   +.......+++|.+..+++-...
T Consensus       589 raIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r  665 (1233)
T KOG1824|consen  589 RAISCMGQIIANFGD-FLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQR  665 (1233)
T ss_pred             HHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999983 32   2345555555554  456899999999888642   23345677899999999988888


Q ss_pred             hHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          354 NIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       354 ~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ..|.+++.++..+.+.++..   ...+.++..+-.+.++.|..+-+.|...+.++..
T Consensus       666 ~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~  722 (1233)
T KOG1824|consen  666 ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI  722 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            89999999999998877653   4456777788888899999999999888877654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=1.4e-16  Score=150.07  Aligned_cols=279  Identities=17%  Similarity=0.225  Sum_probs=218.3

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc------ChhHHHHhhHHHHHHhh
Q 015150          119 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL------GKDATIEQLLPIFLSLL  192 (412)
Q Consensus       119 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~------~~~~~~~~l~~~l~~~l  192 (412)
                      .+.|..|++.|..++.++..+.....++|++..++.|+...||..++.++.++...+      ....+.++|+|.+..++
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~  516 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL  516 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence            567889999999999999999999999999999999999999999999988875443      23456789999999999


Q ss_pred             cc-cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHH-----HhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHH
Q 015150          193 KD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-----LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC  266 (412)
Q Consensus       193 ~d-~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~-----~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  266 (412)
                      .| ....||.+-+++|+.++...-      .++..-..     +.++++..       ..+.--..-+...+...+-..+
T Consensus       517 ~d~~~~~vRiayAsnla~LA~tA~------rFle~~q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~v  583 (1431)
T KOG1240|consen  517 NDSSAQIVRIAYASNLAQLAKTAY------RFLELTQELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQMV  583 (1431)
T ss_pred             ccCccceehhhHHhhHHHHHHHHH------HHHHHHHHHHhcccccCcccc-------cccccccchHHHHHHHHHHHHH
Confidence            99 677899999999999876421      11111111     23444332       0000000011122334456667


Q ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHh
Q 015150          267 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN  346 (412)
Q Consensus       267 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~  346 (412)
                      ..++.|+.+.||++.++++..++.-+|.+.-.+.+++.+..+++|++|+.|.++.+.+..++-..|.....+.++|.+.+
T Consensus       584 ~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q  663 (1431)
T KOG1240|consen  584 SSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ  663 (1431)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH
Confidence            78899999999999999999999999988778889999999999999999999999999998888887778899999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHhhhhc-hHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          347 ASKDRVPNIKFNVAKVLQSLIPIVD-QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       347 ~l~d~~~~vR~~~~~~l~~l~~~~~-~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      .+.|+.+.|-..++.++..+.+.-- .....-+++..+..++-.|+.-||..+...+..+++.++
T Consensus       664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls  728 (1431)
T KOG1240|consen  664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS  728 (1431)
T ss_pred             hccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999988875321 223345677777777889999999999999999888765

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.2e-15  Score=133.32  Aligned_cols=342  Identities=17%  Similarity=0.145  Sum_probs=257.9

Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHH---
Q 015150           68 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE---  139 (412)
Q Consensus        68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~---  139 (412)
                      .+.........+...+..+...+.++........    ...-++|.+.+++. +.++.++..|..+|..++....+.   
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            4555555555566667777777776655433321    23468899999886 777999999999999998754443   


Q ss_pred             HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccCh-HHHHHHHHHHHHHHHhhc
Q 015150          140 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG  215 (412)
Q Consensus       140 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~i~~~~~  215 (412)
                      ......+|.+.+++.+++..|+..+++++++++..-.   .-......++.+..++...++ .....+..+|..+++...
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            3456688999999999999999999999999985432   122234567777777776654 555667788888887753


Q ss_pred             h--h-hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 015150          216 I--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  289 (412)
Q Consensus       216 ~--~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  289 (412)
                      +  . .-...++|.+..++.+.++.|...+++++..++......   .....++|.+..+|......|+..|++++|.++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            2  1 224778999999999999999999999999888655332   233557899999999999999999999999977


Q ss_pred             HHhCh---hhhhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150          290 EEFGP---DWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKV  362 (412)
Q Consensus       290 ~~~~~---~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~  362 (412)
                      ..-+.   ..+....+|.+..++. ++...+|..+++.++.+.......   -+...++|.+++.++......|+.|+++
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            53221   1234568888998888 666779999999999998633322   2566799999999999999999999999


Q ss_pred             HHHHhhhhchHH----HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150          363 LQSLIPIVDQSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       363 l~~l~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      ++++...-.++.    +...+++.+-.++.-+|.++-..+..+++.+.+..
T Consensus       388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~  438 (514)
T KOG0166|consen  388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG  438 (514)
T ss_pred             HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence            999976655542    33568888888888888888888888888877653

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=8.6e-15  Score=141.31  Aligned_cols=391  Identities=17%  Similarity=0.187  Sum_probs=278.9

Q ss_pred             CchhHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---h-----------
Q 015150            1 MPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---D-----------   62 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~-----------   62 (412)
                      .|++|++.+-++-.+..+.++.    -...+|...+..++.|+++-+...|.+.++-+..--+..   .           
T Consensus       831 nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~tl~~  910 (1702)
T KOG0915|consen  831 NPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNTLTG  910 (1702)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHHHhc
Confidence            3899999999999999988732    134667778888899999888888888887665432110   0           


Q ss_pred             ------------------------------------------hhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCC
Q 015150           63 ------------------------------------------CVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP   99 (412)
Q Consensus        63 ------------------------------------------~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~   99 (412)
                                                                ..++++=.++++.++ ..|.-|+.++..++.++...+.
T Consensus       911 Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~  990 (1702)
T KOG0915|consen  911 GKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGE  990 (1702)
T ss_pred             cccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHH
Confidence                                                      011233335556554 5699999999999999987764


Q ss_pred             C--CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh--CHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc
Q 015150          100 E--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL  175 (412)
Q Consensus       100 ~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  175 (412)
                      .  .+..+++|.+.++=.||+..|+.+.......+..--  --+.+.+.|+.-+...+.+..|+||.++|-++..+.+--
T Consensus       991 kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~ 1070 (1702)
T KOG0915|consen  991 KLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGR 1070 (1702)
T ss_pred             hhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCC
Confidence            4  355789999999999999999999888887765421  123566677788888889999999999999999998765


Q ss_pred             ChhHHHHhhHHHH---HHhhcccChHHHHHHHHHHHHHHHh---hc-------hhhHHhhHHHHHHH-HhcCCCchHHHH
Q 015150          176 GKDATIEQLLPIF---LSLLKDEFPDVRLNIISKLDQVNQV---IG-------IDLLSQSLLPAIVE-LAEDRHWRVRLA  241 (412)
Q Consensus       176 ~~~~~~~~l~~~l---~~~l~d~~~~vr~~~~~~l~~i~~~---~~-------~~~~~~~~~~~l~~-~~~d~~~~vr~~  241 (412)
                      +.+.+.+.+...+   .+..+|-.+.||.++-++...+.+.   ..       .......++|.+.. -.-++-..+|..
T Consensus      1071 ~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~ 1150 (1702)
T KOG0915|consen 1071 PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRF 1150 (1702)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHH
Confidence            5555555544444   3445666788998776554444332   11       12344667777664 223677899999


Q ss_pred             HHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHH-------------------HHHHH------HHHHHHHHHhCh
Q 015150          242 IIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSI-------------------RDAAA------NNVKRLAEEFGP  294 (412)
Q Consensus       242 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~v-------------------r~~a~------~~l~~l~~~~~~  294 (412)
                      ++..+..+++..|...  +.+.++|.++...+.-.+.|                   |..++      +++..++.+...
T Consensus      1151 si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~ 1230 (1702)
T KOG0915|consen 1151 SIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDI 1230 (1702)
T ss_pred             HHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH
Confidence            9999999999988753  34667888777665443332                   22221      123333333322


Q ss_pred             hhhhhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150          295 DWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  371 (412)
Q Consensus       295 ~~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  371 (412)
                       ...++++|.+.++.+.. .-..|.++...+..+...+|.+  +|..+++..++..++|.++.+|+..+.++|.++..-.
T Consensus      1231 -~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss 1309 (1702)
T KOG0915|consen 1231 -SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS 1309 (1702)
T ss_pred             -HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC
Confidence             23567888888887754 3557888999999999888887  6888999999999999999999999999999998888


Q ss_pred             hHHHHhhHHHHHHhhcCCCCc
Q 015150          372 QSVVEKSIRPCLVELSEDPDV  392 (412)
Q Consensus       372 ~~~~~~~i~~~l~~l~~d~~~  392 (412)
                      ++.....+-..+..++.+.++
T Consensus      1310 ~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1310 PDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred             hHHHHHHHHHHHHHHhccCCC
Confidence            877766666666666555444

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2.2e-14  Score=127.07  Aligned_cols=377  Identities=14%  Similarity=0.137  Sum_probs=272.3

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhcc--Cc--hhhhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHHHHhCC---C
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLL--EP--QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGP---E  100 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~--~~--~~~~~~l~~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~~---~  100 (412)
                      .+.......++++..+..+...+..+...-  ++  +....-++|.+.+.+ .+.++.++..++-+|.+|+.....   .
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            344444455555556666666666665442  22  233446788777766 477899999999999999974432   2


Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC---HHHHHHhhhhhHHHhccCCcH-HHHHHHHHHHHhcCcccC
Q 015150          101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILG  176 (412)
Q Consensus       101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~  176 (412)
                      ......+|.+..++.+++..|+..|+.+|+.++...+   .-.....+++.+..++..... ...+.+.+++.+++....
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            3446789999999999999999999999999875432   223445577777777765554 667778999999987552


Q ss_pred             hh---HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh---hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHH
Q 015150          177 KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  250 (412)
Q Consensus       177 ~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~  250 (412)
                      +.   .....++|.+..++.+.|++|...+..++..+.....+.   .+.-.+.|.+..++......++..++.+++.++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            21   234689999999999999999999999999887553211   123456899999999999999999999999876


Q ss_pred             hhhChh---hHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150          251 SQLGVG---FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQA  323 (412)
Q Consensus       251 ~~~~~~---~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~  323 (412)
                      ...+.+   ......+|.+..++. .+...+|+.|+.+++.+......   ..+...++|.+...+....+++|..++++
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            543322   233457888888888 56666999999999998862211   12345789999999999999999999999


Q ss_pred             HHHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch------HHH-----HhhHHHHHHhhcC
Q 015150          324 ISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SVV-----EKSIRPCLVELSE  388 (412)
Q Consensus       324 l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~------~~~-----~~~i~~~l~~l~~  388 (412)
                      ++.++.....+.    +...+++.+..+|.-++..+-..++.++..+.+.-+.      +.+     ...-+..+..+.+
T Consensus       388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~  467 (514)
T KOG0166|consen  388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQS  467 (514)
T ss_pred             HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhc
Confidence            999987666552    3445888888888766777777788888877653221      111     1234556677777


Q ss_pred             CCCccHHHHHHHHHHHh
Q 015150          389 DPDVDVRFFATQALQSK  405 (412)
Q Consensus       389 d~~~~vr~~a~~al~~~  405 (412)
                      ..+.++...|.+.+++.
T Consensus       468 hen~~Iy~~A~~II~~y  484 (514)
T KOG0166|consen  468 HENEEIYKKAYKIIDTY  484 (514)
T ss_pred             cccHHHHHHHHHHHHHh
Confidence            77778887777766654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.73  E-value=1.8e-13  Score=120.14  Aligned_cols=409  Identities=15%  Similarity=0.132  Sum_probs=268.1

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchH-HHHHHHHhHHHHhhccCchhhhh---h-hHHHHHh-hc
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS-VRLLAVEGCGALGKLLEPQDCVA---H-ILPVIVN-FS   75 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~r~~a~~~l~~i~~~~~~~~~~~---~-l~~~l~~-l~   75 (412)
                      |..-..|++.++.++..--+...|+.++........+++|. .+..++.+++.++....|+....   . +..++.. +-
T Consensus       108 pr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k  187 (858)
T COG5215         108 PRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALK  187 (858)
T ss_pred             cHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcc
Confidence            44556788888888886656677899998888888888764 67888999999999988854332   2 3334433 34


Q ss_pred             cCCChHHHHHHHHHHHH-HHH---HhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC--------------
Q 015150           76 QDKSWRVRYMVANQLYE-LCE---AVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--------------  137 (412)
Q Consensus        76 ~d~~~~vR~~~~~~l~~-l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------------  137 (412)
                      +.++..||.+++++|.. +..   .+..+...++++....+..+.++.++..+++-|+.++....-              
T Consensus       188 ~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~al  267 (858)
T COG5215         188 NETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAAL  267 (858)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999876 322   222333344555555555555556666665555554422100              


Q ss_pred             -------------------------HH----------------------HHHHhhhhhHHHhcc-------CCcHHHHHH
Q 015150          138 -------------------------PE----------------------LAIQHILPCVKELSS-------DSSQHVRSA  163 (412)
Q Consensus       138 -------------------------~~----------------------~~~~~~~~~l~~~~~-------d~~~~vr~~  163 (412)
                                               ++                      .....++|.+++++.       +.+|.+..+
T Consensus       268 t~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma  347 (858)
T COG5215         268 TGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA  347 (858)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence                                     00                      012336777777763       357888888


Q ss_pred             HHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh---hHHhhHHHHHHHHhcCCCchHHH
Q 015150          164 LATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRL  240 (412)
Q Consensus       164 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~  240 (412)
                      +..|+.-+++..|+.. .+..+.++.+-+..+++.-|.++.-+++++...-..+   .+.+..+|.+.....|+.-.++.
T Consensus       348 A~sCLqlfaq~~gd~i-~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~  426 (858)
T COG5215         348 ASSCLQLFAQLKGDKI-MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS  426 (858)
T ss_pred             HHHHHHHHHHHhhhHh-HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence            8888887777766553 3345666677788888999999999999987654332   34567788888888888888888


Q ss_pred             HHHHHhhHHHhhhCh---------------------------------hh------------------HHHHHHHHHHHH
Q 015150          241 AIIEYIPLLASQLGV---------------------------------GF------------------FDDKLGALCMQW  269 (412)
Q Consensus       241 ~~~~~l~~l~~~~~~---------------------------------~~------------------~~~~l~~~l~~~  269 (412)
                      ..+++++.++.....                                 ..                  ++..++..+++.
T Consensus       427 ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~  506 (858)
T COG5215         427 TTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKG  506 (858)
T ss_pred             HHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHH
Confidence            888888887754310                                 00                  011111112111


Q ss_pred             --hcCchhHHHHHHHHHHHHHHHHhChh----------h-----------------------------------------
Q 015150          270 --LKDKVYSIRDAAANNVKRLAEEFGPD----------W-----------------------------------------  296 (412)
Q Consensus       270 --l~d~~~~vr~~a~~~l~~l~~~~~~~----------~-----------------------------------------  296 (412)
                        +.+.+...|.++..+|+.++...+..          +                                         
T Consensus       507 t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~  586 (858)
T COG5215         507 TELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT  586 (858)
T ss_pred             HHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              23556778999999988887643210          0                                         


Q ss_pred             -------hhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          297 -------AMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       297 -------~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                             ..+.++..+.+.+...+ ..+-.-...+++.++..++..  .|.+++.|.+.+.++..+..|-..+...++.+
T Consensus       587 ~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdl  666 (858)
T COG5215         587 RRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDL  666 (858)
T ss_pred             cCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHH
Confidence                   01123333344443332 233444566677777766654  47888999999999888888889999999999


Q ss_pred             hhhhchH--HHHhhHHHHHHhhcCC--CCccHHHHHHHHHHHhHHhhhC
Q 015150          367 IPIVDQS--VVEKSIRPCLVELSED--PDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       367 ~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      +..++.+  .+...+...|.+.++.  .+.+++-...+.++.|+-.+|.
T Consensus       667 antl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga  715 (858)
T COG5215         667 ANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA  715 (858)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence            9988876  3556677777775444  4557888889999998887774

>PTZ00429 beta-adaptin; Provisional

Probab=99.72  E-value=3.6e-13  Score=127.74  Aligned_cols=307  Identities=15%  Similarity=0.138  Sum_probs=193.4

Q ss_pred             HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchH
Q 015150           28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV  107 (412)
Q Consensus        28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  107 (412)
                      .++.+.+-++|+++.+|..|++.++.+..    ......+.+.+.+.+.|+++-||+.|+-++.++....++......++
T Consensus       106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~  181 (746)
T PTZ00429        106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFK  181 (746)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchH
Confidence            45667777889999999999888876553    33667788888999999999999999999999877555433345678


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH
Q 015150          108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP  186 (412)
Q Consensus       108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  186 (412)
                      +.+.+++.|.++.|...|+.+|..+.+..+.. ......+..+...+.+-+++-+..+.+.+......  .+.....++.
T Consensus       182 ~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~  259 (746)
T PTZ00429        182 KDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLT  259 (746)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHH
Confidence            88889999999999999999999887654322 11122233334444555666667777776553321  1112345666


Q ss_pred             HHHHhhcccChHHHHHHHHHHHHHHHhhchhhH---HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150          187 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  263 (412)
Q Consensus       187 ~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  263 (412)
                      .+...++..++.|...+++.+-.+.....++..   ...+-+.+..+ .+.++.+|..++..+..+.... +..+..+ .
T Consensus       260 ~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~  336 (746)
T PTZ00429        260 RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTN-L  336 (746)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHH-H
Confidence            677777777888888888887777654432222   11222334444 4566788888888877776644 2233332 3


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHH
Q 015150          264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPV  343 (412)
Q Consensus       264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~  343 (412)
                      ..+....+|+.. ||...+..|..++..-.    .+.++..|.++..+.+...+..++.+++.++..++.  ..+.++..
T Consensus       337 ~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~  409 (746)
T PTZ00429        337 DSFYVRYSDPPF-VKLEKLRLLLKLVTPSV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANL  409 (746)
T ss_pred             HhhhcccCCcHH-HHHHHHHHHHHHcCccc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHH
Confidence            344444556553 66666666655543211    234556666666666666667777777776654432  23444444


Q ss_pred             HHhhcCC
Q 015150          344 VINASKD  350 (412)
Q Consensus       344 l~~~l~d  350 (412)
                      +++++++
T Consensus       410 Ll~ll~~  416 (746)
T PTZ00429        410 LLQIVDR  416 (746)
T ss_pred             HHHHhcC
Confidence            4444443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.71  E-value=8.2e-13  Score=116.10  Aligned_cols=366  Identities=14%  Similarity=0.126  Sum_probs=260.6

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCc--------------hhhhhh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP--------------QDCVAH   66 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~--------------~~~~~~   66 (412)
                      |.+|.++-..|.++.+    ..+.+.+-=+.+.+++++ ++..|..|.-+|.+-...-.+              .+.++.
T Consensus        19 ~n~rl~aE~ql~~l~~----~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~q   94 (858)
T COG5215          19 PNARLRAEAQLLELQS----GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQ   94 (858)
T ss_pred             CCccccHHHHHHHhcc----ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHH
Confidence            6677777777766654    223332222233344433 466788777666544322211              124556


Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChH-HHHHHHHHHHHHHHHhhCHHHHHH--
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILNPELAIQ--  143 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~--  143 (412)
                      +-...++.+..+.++.-..+++.++.|++.--+...++.++..+.....|+.+ .++..++..++..++...|+...+  
T Consensus        95 vK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s  174 (858)
T COG5215          95 VKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS  174 (858)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence            77778888899999999999999999998766777788888888888887765 578888899999998887753322  


Q ss_pred             -hh-hhhHHHhc-cCCcHHHHHHHHHHHHhcC----cccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch
Q 015150          144 -HI-LPCVKELS-SDSSQHVRSALATVIMGMA----PILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  216 (412)
Q Consensus       144 -~~-~~~l~~~~-~d~~~~vr~~~~~~l~~l~----~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~  216 (412)
                       .+ +....... +.++..||-++..++..-.    ..+..+.-.+.++...++.-+.++.+++.++..++.++....-.
T Consensus       175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~  254 (858)
T COG5215         175 NVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK  254 (858)
T ss_pred             hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence             22 23333333 4578899999999887622    22333344456777777777788999999999999998755321


Q ss_pred             --hhH-HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-Ch------------h---h---HHHHHHHHHHHHhc---
Q 015150          217 --DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GV------------G---F---FDDKLGALCMQWLK---  271 (412)
Q Consensus       217 --~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~------------~---~---~~~~l~~~l~~~l~---  271 (412)
                        ..+ .+.+.....+.+++++.+|...+++.++.+++-- ..            +   +   ....++|.++++|.   
T Consensus       255 fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~  334 (858)
T COG5215         255 FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQG  334 (858)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcC
Confidence              111 2233344456789999999999999887765421 00            0   0   12447888898874   


Q ss_pred             ----CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHH
Q 015150          272 ----DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVV  344 (412)
Q Consensus       272 ----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l  344 (412)
                          +++|.+-.+|..+|.-+.+..|... ...++..+.+.+..++|.-|++++-++|.+.+.-...   ++....+|.+
T Consensus       335 ed~~~DdWn~smaA~sCLqlfaq~~gd~i-~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i  413 (858)
T COG5215         335 EDYYGDDWNPSMAASSCLQLFAQLKGDKI-MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGI  413 (858)
T ss_pred             CCccccccchhhhHHHHHHHHHHHhhhHh-HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHH
Confidence                4678899999999999999887764 4447788888999999999999999999998654433   5778889999


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150          345 INASKDRVPNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~  372 (412)
                      .+...|+.-.|+..++++++.++..+..
T Consensus       414 ~n~m~D~~l~vk~ttAwc~g~iad~va~  441 (858)
T COG5215         414 ENEMSDSCLWVKSTTAWCFGAIADHVAM  441 (858)
T ss_pred             HHhcccceeehhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999876543

>PTZ00429 beta-adaptin; Provisional

Probab=99.70  E-value=3.7e-13  Score=127.66  Aligned_cols=345  Identities=13%  Similarity=0.096  Sum_probs=231.6

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150           27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV  106 (412)
Q Consensus        27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  106 (412)
                      .+.+-+.++..+++..+|+.....+...++..++  ..-...+.+.+-++|+++.+|..+++.++.+..    ....+.+
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l  141 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE--KALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLEYT  141 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHH
Confidence            3455555567777888888777776666544322  223456777888889999999999998887653    1233567


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH-HHHhhH
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA-TIEQLL  185 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~  185 (412)
                      .+.+.+++.|+++.||+.|+-++.++....++......+++.+.+++.|+++.|...++.++..+.+..+... .....+
T Consensus       142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~  221 (746)
T PTZ00429        142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWV  221 (746)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            7778888999999999999999998876544332233467778888899999999999998888865433211 112223


Q ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH---HHH
Q 015150          186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKL  262 (412)
Q Consensus       186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l  262 (412)
                      ..+...+.+-++.-+...+..|......  .+.....++..+...+.+.++.|-.++++++-.+.....++...   ..+
T Consensus       222 ~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl  299 (746)
T PTZ00429        222 NRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRV  299 (746)
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            3344445555666666666666442211  11223467777778888899999999999887776544332222   224


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHH
Q 015150          263 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLP  342 (412)
Q Consensus       263 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~  342 (412)
                      .+.++.+ ...++++|..++.++..+.... +..+.. -+..+.-.++|+.+ +|...++.+..++..-.    ...++.
T Consensus       300 ~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~-~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~N----v~~IL~  371 (746)
T PTZ00429        300 NTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRT-NLDSFYVRYSDPPF-VKLEKLRLLLKLVTPSV----APEILK  371 (746)
T ss_pred             HHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHH-HHHhhhcccCCcHH-HHHHHHHHHHHHcCccc----HHHHHH
Confidence            4555555 4567899999999998888754 343333 35556666788876 89999999999875433    345677


Q ss_pred             HHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCC
Q 015150          343 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED  389 (412)
Q Consensus       343 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d  389 (412)
                      .+.++..|.+...+..++++++.++..+..  ..+.++..|..++++
T Consensus       372 EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~  416 (746)
T PTZ00429        372 ELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDR  416 (746)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcC
Confidence            778888899999999999999999876543  223444444444433

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.66  E-value=2.2e-12  Score=119.38  Aligned_cols=377  Identities=16%  Similarity=0.168  Sum_probs=257.1

Q ss_pred             HHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC---CCcccch
Q 015150           30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDV  106 (412)
Q Consensus        30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l  106 (412)
                      +.+...+++.+.+.-..++.+|..+.....+....+.+.+.+...+.++++.||..+++.++.++.....   -.....+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l  120 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL  120 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence            3355566666666667888999999998888777888999999999999999999999999888754321   1234679


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh---hHHH
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATI  181 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~  181 (412)
                      ++.+..++.|++..|.+.|+.+|..++++-..-  .+.+...+.+..++...+..+|..+.+.+..++..-..   ....
T Consensus       121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~  200 (503)
T PF10508_consen  121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN  200 (503)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence            999999999999999999999999998753222  22333477788888777888999899988888754322   1122


Q ss_pred             HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch-hh-HHhhHHHHHHHHhcCC--CchHH----HHHHHHhhHHHhhh
Q 015150          182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DL-LSQSLLPAIVELAEDR--HWRVR----LAIIEYIPLLASQL  253 (412)
Q Consensus       182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~-~~-~~~~~~~~l~~~~~d~--~~~vr----~~~~~~l~~l~~~~  253 (412)
                      ..+++.+...++++|.-+|.+++..+..++..-.. .. ....+++.+..++.+.  +++.+    .+.+..++.++..-
T Consensus       201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~  280 (503)
T PF10508_consen  201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS  280 (503)
T ss_pred             ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC
Confidence            45888999999998899999999999999873221 11 1234666666665443  23111    12334555555542


Q ss_pred             Chhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh-hhh-------hhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150          254 GVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-DWA-------MQHIVPQVLEMINNPHYLYRMTILQA  323 (412)
Q Consensus       254 ~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~-------~~~~l~~l~~~~~~~~~~~r~~~~~~  323 (412)
                      +...  ..+.++..+..++.+.+...+..|+.++|.+...... ..+       .+.++..+..........+|..++++
T Consensus       281 ~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a  360 (503)
T PF10508_consen  281 PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA  360 (503)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            2221  2355666667778889999999999999988754422 222       12344455555556667899999999


Q ss_pred             HHHhccccch---h--------HH---HHhhHH-HHHhhcCCCCchHHHHHHHHHHHHhhh-hchHH--HHhhHHHHHHh
Q 015150          324 ISLLAPVMGS---E--------IT---CSQLLP-VVINASKDRVPNIKFNVAKVLQSLIPI-VDQSV--VEKSIRPCLVE  385 (412)
Q Consensus       324 l~~l~~~~~~---~--------~~---~~~il~-~l~~~l~d~~~~vR~~~~~~l~~l~~~-~~~~~--~~~~i~~~l~~  385 (412)
                      ++.+......   +        .|   ...-.. .+...++.|.|++|.++.+.+..++.. .|...  ..+.+++.+..
T Consensus       361 l~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld  440 (503)
T PF10508_consen  361 LASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD  440 (503)
T ss_pred             HHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence            9999543332   1        01   111122 677888999999999999999988754 22222  22456666655


Q ss_pred             hcCCCCccHHHHHHHHHHHhH
Q 015150          386 LSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       386 l~~d~~~~vr~~a~~al~~~~  406 (412)
                      -..+++++.+..=-..+..+.
T Consensus       441 r~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  441 RSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            566677666555555544444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.60  E-value=2e-11  Score=113.15  Aligned_cols=358  Identities=13%  Similarity=0.149  Sum_probs=244.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHH
Q 015150            6 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRV   82 (412)
Q Consensus         6 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~v   82 (412)
                      ..++..|..+..........+.+.+.+...+.++++.+|..++..++.++.....   -.....+++.+..++.|++..|
T Consensus        56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~V  135 (503)
T PF10508_consen   56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSV  135 (503)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHH
Confidence            3455667777666666666788889999999999999999999999988865422   1133569999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCc
Q 015150           83 RYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSS  157 (412)
Q Consensus        83 R~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~  157 (412)
                      ...+++.|..++..-..  ..+...+.+.+..++..++..+|..+.+.+..+++.-+..   .....+++.+...+.+++
T Consensus       136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD  215 (503)
T PF10508_consen  136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD  215 (503)
T ss_pred             HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc
Confidence            99999999999864221  1223445788888888878899999999999887654332   223348888888888899


Q ss_pred             HHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChHHHH------HHHHHHHHHHHhhchhhH---HhhHHHH
Q 015150          158 QHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRL------NIISKLDQVNQVIGIDLL---SQSLLPA  226 (412)
Q Consensus       158 ~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~------~~~~~l~~i~~~~~~~~~---~~~~~~~  226 (412)
                      .-++..+++.+..++..-..-.  ....+++.+.+++.+.+.+-|.      +.++.++.+... ++..+   .+.++..
T Consensus       216 iLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~  294 (503)
T PF10508_consen  216 ILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLER  294 (503)
T ss_pred             HHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHH
Confidence            9999999999999987332211  1245777788877654222122      223445555543 33222   2455666


Q ss_pred             HHHHhcCCCchHHHHHHHHhhHHHhhh-ChhhH-------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh----
Q 015150          227 IVELAEDRHWRVRLAIIEYIPLLASQL-GVGFF-------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP----  294 (412)
Q Consensus       227 l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----  294 (412)
                      +..+.++.++..+..++.+++.++... |...+       ...++..+.........++|..++.+++.+......    
T Consensus       295 l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~  374 (503)
T PF10508_consen  295 LFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDN  374 (503)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH
Confidence            677788899999999999999998655 33322       133455555556677788999999999999754332    


Q ss_pred             -------hhh---hhhhHH-HHHhhhcCCchHHHHHHHHHHHHhccccchh-H--HHHhhHHHHHhhcCCCCchH---HH
Q 015150          295 -------DWA---MQHIVP-QVLEMINNPHYLYRMTILQAISLLAPVMGSE-I--TCSQLLPVVINASKDRVPNI---KF  357 (412)
Q Consensus       295 -------~~~---~~~~l~-~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~--~~~~il~~l~~~l~d~~~~v---R~  357 (412)
                             .|+   .+.-.. .++.+++.|-+.+|.++...+..++..-..- .  -.+.++..++..-.++++..   |.
T Consensus       375 ~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~  454 (503)
T PF10508_consen  375 DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKY  454 (503)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHH
Confidence                   111   111112 6777888898999999999999998643221 1  13345555555445555444   44


Q ss_pred             HHHHHHH
Q 015150          358 NVAKVLQ  364 (412)
Q Consensus       358 ~~~~~l~  364 (412)
                      .++++|.
T Consensus       455 ~ii~~l~  461 (503)
T PF10508_consen  455 DIIKALA  461 (503)
T ss_pred             HHHHHHH
Confidence            4555555

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=9.6e-12  Score=120.84  Aligned_cols=400  Identities=19%  Similarity=0.234  Sum_probs=265.0

Q ss_pred             hHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCC
Q 015150            4 VRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKS   79 (412)
Q Consensus         4 vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~   79 (412)
                      -|+.|+-.|+.+++..++  +.+...++|-+.++-=|++..++.+...+...+...-..  +.+.++|+.-++..+.+..
T Consensus       973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen  973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE 1052 (1702)
T ss_pred             cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh
Confidence            366778888888887654  345666888888888899999998877777766654222  5567788888888889999


Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC----------HHHHHHhhh
Q 015150           80 WRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------PELAIQHIL  146 (412)
Q Consensus        80 ~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------~~~~~~~~~  146 (412)
                      |+||.++|-+|..+.+.-+.+...   ++++..+++..+|-.+.||.+|-.+...+++.+-          ...+...++
T Consensus      1053 wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence            999999999999999875544432   3567777788899999999998777766665431          235667788


Q ss_pred             hhHHH-hccCCcHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChH-------------------HHHHHH
Q 015150          147 PCVKE-LSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPD-------------------VRLNII  204 (412)
Q Consensus       147 ~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~-------------------vr~~~~  204 (412)
                      |++.. .+-+.-++||..+...+..+++.-|+..  ....|+|.+.+....-++.                   .|..++
T Consensus      1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~a 1212 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAA 1212 (1702)
T ss_pred             HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence            98875 2336788999999999999998877743  2356777777665443332                   333333


Q ss_pred             H------HHHHHHHhhchhhHHhhHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchh
Q 015150          205 S------KLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVY  275 (412)
Q Consensus       205 ~------~l~~i~~~~~~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~  275 (412)
                      +      .++...++++... ...++|.+.+++... .-..|.+++..+..++..+|.+.  +...++..++..++|.+.
T Consensus      1213 ksspmmeTi~~ci~~iD~~v-Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNe 1291 (1702)
T KOG0915|consen 1213 KSSPMMETINKCINYIDISV-LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNE 1291 (1702)
T ss_pred             cCCcHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccH
Confidence            2      2233333333333 367888888877654 45678888888888888887654  456788889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch--hHHHHhhHHHHHhhcCCC--
Q 015150          276 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDR--  351 (412)
Q Consensus       276 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~--  351 (412)
                      .+|.+-..+++.+++.-.++...+-+-..+..++.+.+. .+..++..+..++.....  +.+...++|..+-...+.  
T Consensus      1292 sv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~K 1370 (1702)
T KOG0915|consen 1292 SVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEK 1370 (1702)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHH
Confidence            999999999999998766654444333334445554332 113333333333322211  135677888776555443  


Q ss_pred             -CchHHHHHHHHHHHHhhh-hchH--HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          352 -VPNIKFNVAKVLQSLIPI-VDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       352 -~~~vR~~~~~~l~~l~~~-~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                       +.+.+...+   ..+.+. .|.-  ...+.+.+......++..+.+|..++.++..++.-
T Consensus      1371 a~q~Lw~dvW---~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1371 ANQELWNDVW---AELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred             HHHHHHHHHH---HHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence             111222221   111111 1111  23345566666677888899999999998877653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=2.2e-12  Score=107.51  Aligned_cols=380  Identities=17%  Similarity=0.165  Sum_probs=254.6

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhh---hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC-
Q 015150           26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-  101 (412)
Q Consensus        26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~---~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~-  101 (412)
                      .+...-+..++++.++.+..++...+++++-........   .-+-+++.+...| ...+|..++.++.+++..-.... 
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~k  162 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVK  162 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhh
Confidence            334444556678888889999999999888765442221   2244566666655 56688888999998886522111 


Q ss_pred             -cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh
Q 015150          102 -TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD  178 (412)
Q Consensus       102 -~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  178 (412)
                       ...--+..+.++-+.++..||..+..+|..+.......  .....-+|++.++++..+..||..++.+++.++-.-...
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R  242 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR  242 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence             11223455666888999999999999998886644332  333457899999999999999999999999987432111


Q ss_pred             H--HH--HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150          179 A--TI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  252 (412)
Q Consensus       179 ~--~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  252 (412)
                      .  ..  ..++|.+.+++.|.++.++-.+..+|..+.....  .+.....-+|.+.+++.++.-..-.+.+.++..++-.
T Consensus       243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih  322 (550)
T KOG4224|consen  243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH  322 (550)
T ss_pred             HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence            1  11  3589999999999999999999989888865422  2333345689999999887766655566666555544


Q ss_pred             hChhhH--HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHH
Q 015150          253 LGVGFF--DDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISL  326 (412)
Q Consensus       253 ~~~~~~--~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~  326 (412)
                      -+.+..  ...++..+..+|.- ++.+++-.|..+|..++.....   .++-...+|.+.+++.|..-.+|...--++..
T Consensus       323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~  402 (550)
T KOG4224|consen  323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ  402 (550)
T ss_pred             cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence            433322  22234445566654 4556999999999888763321   22234578999999999876666554445554


Q ss_pred             h--ccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH--------HHhhHHHHHHhhcCCCCccHHH
Q 015150          327 L--APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--------VEKSIRPCLVELSEDPDVDVRF  396 (412)
Q Consensus       327 l--~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--------~~~~i~~~l~~l~~d~~~~vr~  396 (412)
                      +  .+..........++|.++.+..+.+.+||-.++.+|..++...+...        -.+.|--.|...+...+..+|.
T Consensus       403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~h  482 (550)
T KOG4224|consen  403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRH  482 (550)
T ss_pred             HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHH
Confidence            4  44333334455799999999999999999999999999987654310        0133444455555555566666


Q ss_pred             HHHHHHHHhH
Q 015150          397 FATQALQSKD  406 (412)
Q Consensus       397 ~a~~al~~~~  406 (412)
                      .+...+..+.
T Consensus       483 ia~wTI~qLl  492 (550)
T KOG4224|consen  483 IARWTIQQLL  492 (550)
T ss_pred             HHHHHHHHHH
Confidence            6666655544

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=4.9e-13  Score=111.32  Aligned_cols=342  Identities=15%  Similarity=0.136  Sum_probs=244.6

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch---HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH--
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV---VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA--  141 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--  141 (412)
                      ....++.+++++++.+..++..++|+++-..+.......+   =+.+.++..|. .+||..++.|+..++..-.....  
T Consensus        86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA  164 (550)
T KOG4224|consen   86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIA  164 (550)
T ss_pred             hhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhh
Confidence            4445667788889999999999999998777665544433   33666777664 57899999999998876333321  


Q ss_pred             HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh--
Q 015150          142 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--  217 (412)
Q Consensus       142 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~--  217 (412)
                      ....+..+.++.+.++..||..+..++..+...-..  ..+...-+|.+.++++..+..+|..+..+++.++-.--..  
T Consensus       165 ~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~  244 (550)
T KOG4224|consen  165 RSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI  244 (550)
T ss_pred             hccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence            222444555588888999999999988887654321  2223456799999999999999999999998885321111  


Q ss_pred             --hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh--hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150          218 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG  293 (412)
Q Consensus       218 --~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  293 (412)
                        ...+.++|.+.+++.|++++++..+..++..++.....  +.....-+|.+.++++++.-..-.+...++..+.-.-+
T Consensus       245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl  324 (550)
T KOG4224|consen  245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL  324 (550)
T ss_pred             HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence              11356899999999999999999999999888765422  22334457899999998877666656666655443322


Q ss_pred             hhhh--hhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccch---hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          294 PDWA--MQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       294 ~~~~--~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      ++..  ...++..+..++.-. +..++..++..+..++.....   ..+....+|.+..++.|...+||.....++..++
T Consensus       325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La  404 (550)
T KOG4224|consen  325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA  404 (550)
T ss_pred             cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence            2211  123555566666543 466888999999988753332   2456678999999999999999988888888776


Q ss_pred             hhhc--hHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150          368 PIVD--QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       368 ~~~~--~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      ..=.  .......|+|.|.....|.+.+||-+++.|+..+..-.
T Consensus       405 l~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  405 LNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             hccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence            4322  22345679999999999999999999999999987644

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=2.5e-10  Score=104.35  Aligned_cols=169  Identities=21%  Similarity=0.238  Sum_probs=118.9

Q ss_pred             HHHhccCCchHHHHHH-HHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 015150           32 FEELTQDDQDSVRLLA-VEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY  110 (412)
Q Consensus        32 l~~l~~~~~~~~r~~a-~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l  110 (412)
                      +..+++++.+..+..| -++++.+++..    ..+.++|.+.+.....+.+||+..--.|-..++.-++....  =+..+
T Consensus        40 L~~lLdSnkd~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntf  113 (968)
T KOG1060|consen   40 LKQLLDSNKDSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTF  113 (968)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHH
Confidence            4445777766554444 45666666543    36678888888888888999988777777777643222211  16778


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHH
Q 015150          111 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS  190 (412)
Q Consensus       111 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  190 (412)
                      .+.++|+++.+|..|+..+..+--    ..+...++-.+.++..|.++.||..++.++..+-. ++++... +|+..+..
T Consensus       114 Qk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~-qL~e~I~~  187 (968)
T KOG1060|consen  114 QKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKD-QLEEVIKK  187 (968)
T ss_pred             HhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHH-HHHHHHHH
Confidence            889999999999999988876422    11223344555677889999999999999988864 3444333 88888999


Q ss_pred             hhcccChHHHHHHHHHHHHHHH
Q 015150          191 LLKDEFPDVRLNIISKLDQVNQ  212 (412)
Q Consensus       191 ~l~d~~~~vr~~~~~~l~~i~~  212 (412)
                      ++.|.++-|-..|+-++..++.
T Consensus       188 LLaD~splVvgsAv~AF~evCP  209 (968)
T KOG1060|consen  188 LLADRSPLVVGSAVMAFEEVCP  209 (968)
T ss_pred             HhcCCCCcchhHHHHHHHHhch
Confidence            9999988888888887777653

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=6.7e-11  Score=108.00  Aligned_cols=352  Identities=17%  Similarity=0.163  Sum_probs=229.5

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP  108 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  108 (412)
                      ++.+++-+.|+|+.+|..|++.+..+--..    ..+.++-.+.++..|+++.||+.++.++.++-. ++.+.. .++..
T Consensus       110 IntfQk~L~DpN~LiRasALRvlSsIRvp~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k-~qL~e  183 (968)
T KOG1060|consen  110 INTFQKALKDPNQLIRASALRVLSSIRVPM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQK-DQLEE  183 (968)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhcchhh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhH-HHHHH
Confidence            356778899999999999998887775433    455677778889999999999999999999875 344433 48889


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHhh---------------CH-HHH-------------------------------
Q 015150          109 AYVRLLRDNEAEVRIAAAGKVTKICRIL---------------NP-ELA-------------------------------  141 (412)
Q Consensus       109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~---------------~~-~~~-------------------------------  141 (412)
                      .+..++.|.++.|-.+|+-++..++..-               .+ ++|                               
T Consensus       184 ~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~  263 (968)
T KOG1060|consen  184 VIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG  263 (968)
T ss_pred             HHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc
Confidence            9999999999888888877776554310               00 001                               


Q ss_pred             ---------------------HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHH
Q 015150          142 ---------------------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVR  200 (412)
Q Consensus       142 ---------------------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  200 (412)
                                           ...++.....++...++.|-.++++.+..++...    ....++..+..++.. ++++|
T Consensus       264 ~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs-~~~vq  338 (968)
T KOG1060|consen  264 RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRS-NREVQ  338 (968)
T ss_pred             ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhc-CCcch
Confidence                                 0112223334556677777778888887777532    223455556666654 46677


Q ss_pred             HHHHHHHHHHHHhhc----------------hh----------------hHHhhHHHHHHHHhcCCCchHHHHHHHHhhH
Q 015150          201 LNIISKLDQVNQVIG----------------ID----------------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  248 (412)
Q Consensus       201 ~~~~~~l~~i~~~~~----------------~~----------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~  248 (412)
                      ...++++..+...-.                +.                .-...+++-+..+.++.+-++-.+++++++.
T Consensus       339 yvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGr  418 (968)
T KOG1060|consen  339 YVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGR  418 (968)
T ss_pred             hhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            777777766643210                00                0013445556666777766777777888888


Q ss_pred             HHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHh
Q 015150          249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLL  327 (412)
Q Consensus       249 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l  327 (412)
                      .+...+.  +.++.+.-++.+++..+..|..++...+..+++.-..+  ...++-.+.+++..-. +.-|.+.++.+|..
T Consensus       419 CA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La~lldti~vp~ARA~IiWLige~  494 (968)
T KOG1060|consen  419 CASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE--HLEILFQLARLLDTILVPAARAGIIWLIGEY  494 (968)
T ss_pred             HHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH--HHHHHHHHHHHhhhhhhhhhhceeeeeehhh
Confidence            8777654  34667777788888888888888888888888754333  2235555555553322 55677777877777


Q ss_pred             ccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh-hcCCCCccHHHHHH
Q 015150          328 APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFAT  399 (412)
Q Consensus       328 ~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~  399 (412)
                      ++...  .+.+.++..+.+.+.|..+.||..++..-.++...-..+  ...+...+.. .--|+.-++|..+.
T Consensus       495 ~e~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRDRaR  563 (968)
T KOG1060|consen  495 CEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRDRAR  563 (968)
T ss_pred             hhhcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhHHHH
Confidence            65433  245667777788889999999999998887775432221  1222232323 23577777776654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.47  E-value=5.4e-11  Score=105.77  Aligned_cols=278  Identities=23%  Similarity=0.271  Sum_probs=204.8

Q ss_pred             hhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 015150           66 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI  145 (412)
Q Consensus        66 ~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  145 (412)
                      ...+.+.+.+.|+++.+|..++..++.+..        ...+|.+...+.|+++.||..+..+++.+..        ...
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            467778888888899999999999877664        5788999999999999999999998887643        234


Q ss_pred             hhhHHHhcc-CCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccC------------hHHHHHHHHHHHHHHH
Q 015150          146 LPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ  212 (412)
Q Consensus       146 ~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~~~~~l~~i~~  212 (412)
                      +|.+.++++ |.++.||..++.+++.+...        .-++.+...++|+.            ..+|..++..++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            566666665 89999999999999988742        22344445555533            2577777777776653


Q ss_pred             hhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150          213 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  292 (412)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  292 (412)
                              +...+.+...+.+.+..+|..++..++.+....      ..+.+.+...+.|+++.+|..++..++..-.  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    346677888888999999999999888776543      3466788888999999999999988876442  


Q ss_pred             ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150          293 GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       293 ~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  372 (412)
                            ....+.+...+.+.++.++.......+..        ......+.+...+.|....+|......++.+..    
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~----  304 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGAL--------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQ----  304 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhccc--------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc----
Confidence                  34556777777888887777666666521        122334556666788888999999999988875    


Q ss_pred             HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150          373 SVVEKSIRPCLVELSEDPDVDVRFFATQALQSK  405 (412)
Q Consensus       373 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  405 (412)
                          ............+.+..+|..+......+
T Consensus       305 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  333 (335)
T COG1413         305 ----EKAVAALLLALEDGDADVRKAALILLEGI  333 (335)
T ss_pred             ----cchHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence                34455555666777788888777766543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.44  E-value=1.5e-10  Score=102.94  Aligned_cols=277  Identities=23%  Similarity=0.262  Sum_probs=206.7

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150           27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV  106 (412)
Q Consensus        27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  106 (412)
                      ...+.+.+.+.+++..+|..+...++.+.        ....+|.+...+.|.++.+|..++.+|+.+..        ...
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            35666777788888899999888865554        34688899999999999999999998887663        556


Q ss_pred             HHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCc------------HHHHHHHHHHHHhcCc
Q 015150          107 VPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS------------QHVRSALATVIMGMAP  173 (412)
Q Consensus       107 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~------------~~vr~~~~~~l~~l~~  173 (412)
                      ++.+..+++ |++..||..+..+|+.+...-        .+..+...++|..            +.+|..+...++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            777777777 899999999999999876521        2334444444433            4789999988888763


Q ss_pred             ccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150          174 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  253 (412)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  253 (412)
                              ....+.+...+.|.+..||..++.+++.+....      ..+.+.+.....+.+|.+|..++..++.+..  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    356688888999999999999999999997652      3567888899999999999999988865543  


Q ss_pred             ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150          254 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       254 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                            ....+.+...+.+.++.++..+...++.    .    -.....+.+...+.|..+.+|..+...++......  
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~----~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--  306 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGA----L----DLAEAALPLLLLLIDEANAVRLEAALALGQIGQEK--  306 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhcc----c----CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc--
Confidence                  2245556777888888888877766651    1    11233455666778888999999999998876432  


Q ss_pred             hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHH
Q 015150          334 EITCSQLLPVVINASKDRVPNIKFNVAKVLQS  365 (412)
Q Consensus       334 ~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~  365 (412)
                            ..........+....+|.........
T Consensus       307 ------~~~a~~~~~~~~~~~~~~~~~~~~~~  332 (335)
T COG1413         307 ------AVAALLLALEDGDADVRKAALILLEG  332 (335)
T ss_pred             ------hHHHHHHHhcCCchhhHHHHHHHHHh
Confidence                  23444555677778888777766554

>TIGR02270 conserved hypothetical protein

Probab=99.43  E-value=1.2e-10  Score=103.61  Aligned_cols=240  Identities=14%  Similarity=0.039  Sum_probs=130.1

Q ss_pred             hHHHHHHhc-CCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhh
Q 015150          106 VVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL  184 (412)
Q Consensus       106 l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  184 (412)
                      .++.+...+ .|++.+++..++.++.....   +     ..+..+...+.|.++.||..++++++.+..        ...
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~---~-----~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a  118 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED---A-----LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA  118 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC---h-----HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence            455555555 45556666655555542211   0     124555566666666677777777665542        344


Q ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHH
Q 015150          185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  264 (412)
Q Consensus       185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  264 (412)
                      .+.+..+++++++.||..++.+++....         .-.+.+...++|+++.||..++.+++.+...        ...|
T Consensus       119 ~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~  181 (410)
T TIGR02270       119 EPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPRR--------LSES  181 (410)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--------cchH
Confidence            5566666666677777666655544221         1234455556677777777776666655432        1333


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150          265 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  344 (412)
Q Consensus       265 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l  344 (412)
                      .+...+.|.++.||..|+..++.+.    .    ....+.+..+..++....+......+...    +.    +..++.+
T Consensus       182 ~L~~al~d~~~~VR~aA~~al~~lG----~----~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L  245 (410)
T TIGR02270       182 TLRLYLRDSDPEVRFAALEAGLLAG----S----RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL  245 (410)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcC----C----HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence            3445567777777777776665432    1    12223444434444433333333333322    11    2556666


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      ..+++|+.  +|..++.+++.+..        ...++.|...++|+.  ++..|.+++..|-
T Consensus       246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence            66666644  67777777776654        345666666555543  7777777666653

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.42  E-value=1.3e-10  Score=96.18  Aligned_cols=380  Identities=13%  Similarity=0.112  Sum_probs=239.5

Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhh-cc-Cc--hhhhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHHHHhC
Q 015150           24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK-LL-EP--QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG   98 (412)
Q Consensus        24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~-~~-~~--~~~~~~l~~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~   98 (412)
                      +..++-.+...+.+|+- +....|..-+..+.. .- ++  .....-+.|-+.+++ +.........++=+|.+++....
T Consensus        69 ~~~elp~lt~~l~SdDi-e~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt  147 (526)
T COG5064          69 FYSELPQLTQQLFSDDI-EQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT  147 (526)
T ss_pred             hhhhhHHHHHHHhhhHH-HHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence            44455444444555543 333334333333332 21 11  112233677777777 44556677888888998886544


Q ss_pred             CCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHh---hCHHHHHHhhhhhHHHhccCCc--HHHHHHHHHHHHh
Q 015150           99 PEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI---LNPELAIQHILPCVKELSSDSS--QHVRSALATVIMG  170 (412)
Q Consensus        99 ~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~~~~d~~--~~vr~~~~~~l~~  170 (412)
                      ...   .....+|.+.+++.+++..||..++.+|+.++--   +.+-......+..++.++...-  -..-+.+.+.+.+
T Consensus       148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN  227 (526)
T COG5064         148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN  227 (526)
T ss_pred             cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence            332   3356899999999999999999999999998642   1122222334555555554332  3555667888888


Q ss_pred             cCcccCh---hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH----HhhHHHHHHHHhcCCCchHHHHHH
Q 015150          171 MAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAII  243 (412)
Q Consensus       171 l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~~~  243 (412)
                      ++.--.+   .......+|.+.+++...++++-..|..+++-+...-. +.+    --.+.+.+.+++.+++..+...++
T Consensus       228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~-E~i~avld~g~~~RLvElLs~~sa~iqtPal  306 (526)
T COG5064         228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN-EKIQAVLDVGIPGRLVELLSHESAKIQTPAL  306 (526)
T ss_pred             hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence            8754322   23446788999999999999999999988887765421 111    123456788999999988888888


Q ss_pred             HHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHH
Q 015150          244 EYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYR  317 (412)
Q Consensus       244 ~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r  317 (412)
                      ..++.+......+   ...-..++.+..+|+++...+|+.|+.++..+.......   .+...++|.|..++....+.+|
T Consensus       307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~k  386 (526)
T COG5064         307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIK  386 (526)
T ss_pred             HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            8887776543221   122335677788899999999999999998876432211   1234688999999999999999


Q ss_pred             HHHHHHHHHhccccchh-H-----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh-------chH--H---H--Hh
Q 015150          318 MTILQAISLLAPVMGSE-I-----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-------DQS--V---V--EK  377 (412)
Q Consensus       318 ~~~~~~l~~l~~~~~~~-~-----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~-------~~~--~---~--~~  377 (412)
                      ..+++++.......-.. .     ..+-++..+..+|.-..-.+-..++.++..+.+.-       |..  .   +  ..
T Consensus       387 KEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~A  466 (526)
T COG5064         387 KEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKA  466 (526)
T ss_pred             HHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhc
Confidence            99999999886443221 1     12234444555554322234445566666664321       111  1   1  13


Q ss_pred             hHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150          378 SIRPCLVELSEDPDVDVRFFATQALQSK  405 (412)
Q Consensus       378 ~i~~~l~~l~~d~~~~vr~~a~~al~~~  405 (412)
                      ..+..+..+.+..+.++-..|.+.+..+
T Consensus       467 ggmd~I~~~Q~s~n~~iy~KAYsIIe~f  494 (526)
T COG5064         467 GGMDAIHGLQDSVNRTIYDKAYSIIEKF  494 (526)
T ss_pred             ccHHHHHHhhhccccHHHHHHHHHHHHH
Confidence            4667777787777777777666655543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.41  E-value=2.9e-11  Score=101.11  Aligned_cols=186  Identities=17%  Similarity=0.239  Sum_probs=126.9

Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh----hhHHHH---HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 015150          223 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDK---LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  295 (412)
Q Consensus       223 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  295 (412)
                      +.+.+..--++.+|..|..++..+..+......    ..+.+.   +.+.+...+.|....|...|+..+..++..++..
T Consensus         8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~   87 (228)
T PF12348_consen    8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH   87 (228)
T ss_dssp             S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence            344444445678888888888888887765511    122222   3356667788888889999999999999888765


Q ss_pred             h--hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhh-HHHHHhhcCCCCchHHHHHHHHHHHHhhhhc-
Q 015150          296 W--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQL-LPVVINASKDRVPNIKFNVAKVLQSLIPIVD-  371 (412)
Q Consensus       296 ~--~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~i-l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~-  371 (412)
                      +  +.+.++|.+++.+.+++..+|..+..++..+...++   +...+ .+.+....+++++.+|..++..+..+....+ 
T Consensus        88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~  164 (228)
T PF12348_consen   88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS  164 (228)
T ss_dssp             GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence            2  356788999999999888899999999999988776   22344 7778888899999999999999999888777 


Q ss_pred             --hH----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          372 --QS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       372 --~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                        ..    ...+.+.+.+.++++|++++||..|..++..+.+..|+
T Consensus       165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence              11    22367888999999999999999999999998887663

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=8.1e-09  Score=98.05  Aligned_cols=384  Identities=18%  Similarity=0.159  Sum_probs=227.7

Q ss_pred             hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhC-CC
Q 015150           23 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVG-PE  100 (412)
Q Consensus        23 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~-~~  100 (412)
                      .+.+.++..+.+.++|.+..+|.+|++.++.+..+++.+ ....++.-+..+.+- .++..=+.+|-+|++++..-- ..
T Consensus       337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            345567777788889999999999999999999999864 333333333333221 123334689999999886321 11


Q ss_pred             CcccchHHHHHHhcC--------CChHHHHHHHHHHHHHHHHhhCHHHHH---HhhhhhH-HHhccCCcHHHHHHHHHHH
Q 015150          101 PTRSDVVPAYVRLLR--------DNEAEVRIAAAGKVTKICRILNPELAI---QHILPCV-KELSSDSSQHVRSALATVI  168 (412)
Q Consensus       101 ~~~~~l~~~l~~~l~--------d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l-~~~~~d~~~~vr~~~~~~l  168 (412)
                      ....+++|.+...+.        .....||.+|+..+-+++....+....   +.+.+.+ ...+=|++-.+|++|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            123578888887653        234689999999999999988776433   3333333 3345699999999998888


Q ss_pred             HhcCcccCh-----hHH-------------------------HHhhHHHHHHhhcc----cChHHHHHHHHHHHHHHHhh
Q 015150          169 MGMAPILGK-----DAT-------------------------IEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVI  214 (412)
Q Consensus       169 ~~l~~~~~~-----~~~-------------------------~~~l~~~l~~~l~d----~~~~vr~~~~~~l~~i~~~~  214 (412)
                      .+.....|.     +..                         ..+.-|.+..++..    =+..+|..++.+|..+... 
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~-  574 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT-  574 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh-
Confidence            765433211     110                         11233444444443    2578899999999986544 


Q ss_pred             chhhHHhhHHHHHHHHhcCCCchHHHHHHHH-------------------------------------------------
Q 015150          215 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEY-------------------------------------------------  245 (412)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~-------------------------------------------------  245 (412)
                      .++......+|.+.......+...|......                                                 
T Consensus       575 ~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~  654 (1133)
T KOG1943|consen  575 EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQA  654 (1133)
T ss_pred             hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHH
Confidence            2222223333433333333333333222221                                                 


Q ss_pred             ----hhHHHhhhC---hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh--ChhhhhhhhHHHHHhhhcCC-chH
Q 015150          246 ----IPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF--GPDWAMQHIVPQVLEMINNP-HYL  315 (412)
Q Consensus       246 ----l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~l~~l~~~~~~~-~~~  315 (412)
                          +..+...-.   .+.+.+...-++.+.+.+++ .+|.+|..+++.++..+  +.+.....++......+.+. +..
T Consensus       655 ~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~  733 (1133)
T KOG1943|consen  655 TLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEER  733 (1133)
T ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHH
Confidence                111111000   11222333344445555566 78888888888887654  11211123444444444444 577


Q ss_pred             HHHHHHHHHHHhccccchhHHHHhhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhch-------HHHHhhHHHHHHhhc
Q 015150          316 YRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-------SVVEKSIRPCLVELS  387 (412)
Q Consensus       316 ~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~  387 (412)
                      +|....-+++.+...+=.-...+++...++...- |..+.-|...+.++.++...++.       +.+.+.++..+....
T Consensus       734 ~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYt  813 (1133)
T KOG1943|consen  734 IRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYT  813 (1133)
T ss_pred             HHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence            8888777777765322222234455555555443 33677899999999999887773       234456666666666


Q ss_pred             CCCCcc----HHHHHHHHHHHhHHhh
Q 015150          388 EDPDVD----VRFFATQALQSKDQVM  409 (412)
Q Consensus       388 ~d~~~~----vr~~a~~al~~~~~~~  409 (412)
                      .|...|    ||..|++++..+.-.+
T Consensus       814 td~rGDVGswVReaAm~al~~~~~~l  839 (1133)
T KOG1943|consen  814 TDSRGDVGSWVREAAMKALSSLLDTL  839 (1133)
T ss_pred             cccCccHHHHHHHHHHHHHHhhhhhh
Confidence            665554    8999999998876543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.40  E-value=1.6e-11  Score=101.48  Aligned_cols=339  Identities=15%  Similarity=0.108  Sum_probs=224.9

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhc-CCChHHHHHHHHHHHHHHHHhhCHH---H
Q 015150           69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPE---L  140 (412)
Q Consensus        69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~---~  140 (412)
                      |.+.+.+.+.+-.....+..-+.++...-....    +..-++|.+.+++ +....-.+-.|..+|..++......   .
T Consensus        74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV  153 (526)
T COG5064          74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV  153 (526)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence            545444433344444444444433332211111    1234788899988 5555667778888998887754443   2


Q ss_pred             HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC-h-hHH-HHhhHHHHHHhhcccCh--HHHHHHHHHHHHHHHhhc
Q 015150          141 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG-K-DAT-IEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIG  215 (412)
Q Consensus       141 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~-~~~-~~~l~~~l~~~l~d~~~--~vr~~~~~~l~~i~~~~~  215 (412)
                      .....+|.+.+++.+++..||..+++++|+++..-. . +.+ ....+..+..++..+..  .+-..+...|+.+++.-.
T Consensus       154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn  233 (526)
T COG5064         154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN  233 (526)
T ss_pred             EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence            234578999999999999999999999999984321 1 111 12333444455444333  333344556667765543


Q ss_pred             h--h-hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 015150          216 I--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  289 (412)
Q Consensus       216 ~--~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  289 (412)
                      +  + ......+|.+.+++-..++.+-.-++.+++.++..-...   .+...+.+-+..+|.+++..|..-|++.+|.++
T Consensus       234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV  313 (526)
T COG5064         234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV  313 (526)
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence            2  1 223567899999999999999999999998887643221   122334566788899999999999999999887


Q ss_pred             HHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150          290 EEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVL  363 (412)
Q Consensus       290 ~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l  363 (412)
                      ..-...   .+.--.++.+..++.++...+|..+++.++.+.......   -+...++|.++++++.-...+|+.+++++
T Consensus       314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi  393 (526)
T COG5064         314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI  393 (526)
T ss_pred             ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            533211   122346778888899999999999999999987544332   24557999999999999999999999999


Q ss_pred             HHHhhhh-c-hHH----HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          364 QSLIPIV-D-QSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       364 ~~l~~~~-~-~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ......- + |+.    ..+.++..|..++.-.|..+-+.+..++..+..
T Consensus       394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk  443 (526)
T COG5064         394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK  443 (526)
T ss_pred             HhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence            8875432 1 121    235566667777766677677777777776654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=9.6e-10  Score=98.78  Aligned_cols=254  Identities=14%  Similarity=0.147  Sum_probs=150.2

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc-Ch-h-----
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-GK-D-----  178 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~-~-----  178 (412)
                      +..-+..+.+|.+..||..|++.+..+.+.+.   ..+.+.....++++|.+..||.++++.+...++.. ++ +     
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            33335555566666666666666655554211   11223444455556666666666655544443332 00 0     


Q ss_pred             -HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH----Hhh-------------------------------
Q 015150          179 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQS-------------------------------  222 (412)
Q Consensus       179 -~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~----~~~-------------------------------  222 (412)
                       ...+..+..+++.+.|-+..||..|+++|+.+.+... +.+    .+.                               
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~  354 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN  354 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence             0112333444555556666666666666655543311 111    011                               


Q ss_pred             --------------H-----HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHH
Q 015150          223 --------------L-----LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAAN  283 (412)
Q Consensus       223 --------------~-----~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  283 (412)
                                    +     ...+..-++|+...||.+++..++.++....  .+...-+.++..+++|+...||..|+.
T Consensus       355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~  432 (823)
T KOG2259|consen  355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIF  432 (823)
T ss_pred             ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                          1     1223444677778899999999999886543  345667888999999999999999999


Q ss_pred             HHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150          284 NVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL  363 (412)
Q Consensus       284 ~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l  363 (412)
                      +|..+...+.   +.+..++.+...+.|.+..+|++.-+.|+..- .-..+ .....+..+++.+. ..|.=|..+.+++
T Consensus       433 aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~-~i~m~v~~lL~~L~-kyPqDrd~i~~cm  506 (823)
T KOG2259|consen  433 ALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNAR-VSDLE-CIDMCVAHLLKNLG-KYPQDRDEILRCM  506 (823)
T ss_pred             HHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHH-HHHHHHHHHHHHhh-hCCCCcHHHHHHH
Confidence            9999988743   35778899999999999999999988887642 11111 22222333333332 2334456777888


Q ss_pred             HHHhhhhc
Q 015150          364 QSLIPIVD  371 (412)
Q Consensus       364 ~~l~~~~~  371 (412)
                      +.|.+..+
T Consensus       507 ~~iGqnH~  514 (823)
T KOG2259|consen  507 GRIGQNHR  514 (823)
T ss_pred             HHHhccCh
Confidence            88876544

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.37  E-value=6.3e-09  Score=92.32  Aligned_cols=220  Identities=15%  Similarity=0.145  Sum_probs=131.8

Q ss_pred             HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh-chhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh----
Q 015150          181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----  255 (412)
Q Consensus       181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~-~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----  255 (412)
                      ..++.|.+...++|....|...+++++..+.... +.+.+ +..+..+..+++.+....|-+++..+..++...+.    
T Consensus       262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v  340 (898)
T COG5240         262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV  340 (898)
T ss_pred             HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence            3567788888888888899999999999886543 54443 67778888888888888888888888887754321    


Q ss_pred             -----------------------------hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh----------
Q 015150          256 -----------------------------GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----------  296 (412)
Q Consensus       256 -----------------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----------  296 (412)
                                                   +...+.++..+-.++.|-+..-+.-++.++..+.-.+..++          
T Consensus       341 cN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~  420 (898)
T COG5240         341 CNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSS  420 (898)
T ss_pred             cChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence                                         11223334444444433333323333333333333333222          


Q ss_pred             --------hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---------------------hHHHHhhHHHHHhh
Q 015150          297 --------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---------------------EITCSQLLPVVINA  347 (412)
Q Consensus       297 --------~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---------------------~~~~~~il~~l~~~  347 (412)
                              +.+..+..+....+. .++-|+.+++.++.+.+-+.-                     ..|..++...+.  
T Consensus       421 L~~eGg~eFK~~~Vdaisd~~~~-~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--  497 (898)
T COG5240         421 LLQEGGLEFKKYMVDAISDAMEN-DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI--  497 (898)
T ss_pred             HHhcccchHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--
Confidence                    111122222222221 133444444444444322210                     012222222211  


Q ss_pred             cCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          348 SKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       348 l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                        =.+.-||.+|..+|++++-...+....+.+...++.+++|.|.+||..|.-++..+-
T Consensus       498 --LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         498 --LENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             --HhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence              123349999999999999888777777788899999999999999999999887664

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.36  E-value=2.8e-11  Score=109.82  Aligned_cols=254  Identities=17%  Similarity=0.209  Sum_probs=208.8

Q ss_pred             cCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcC
Q 015150          154 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  233 (412)
Q Consensus       154 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d  233 (412)
                      .-.+..-|......+....+.+..+.....++|.+...+.-.+  --...+..+-.++..+..+.+...++|.+.++.+.
T Consensus       264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~  341 (690)
T KOG1243|consen  264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS  341 (690)
T ss_pred             ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence            4456666777777777777777888778888888877654332  11122333444555556566778899999999999


Q ss_pred             CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc
Q 015150          234 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH  313 (412)
Q Consensus       234 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~  313 (412)
                      .+-.+|...+..+......+.++.+.+.+.|.+...+.|.++.+|+.+++++..++..++...+..+++..+...-.|.+
T Consensus       342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~  421 (690)
T KOG1243|consen  342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH  421 (690)
T ss_pred             cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999998888889988888888888


Q ss_pred             hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCcc
Q 015150          314 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD  393 (412)
Q Consensus       314 ~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~  393 (412)
                      ..+|....-+++.++..+........+.-.+...+.|+.+.-|.++...+....+.+........|+|.+..+.-|++..
T Consensus       422 ~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~  501 (690)
T KOG1243|consen  422 GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKT  501 (690)
T ss_pred             CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccc
Confidence            88999999999999887765532222333444568999999999999999988888888888899999999999999999


Q ss_pred             HHHHHHHHHHHhHHhh
Q 015150          394 VRFFATQALQSKDQVM  409 (412)
Q Consensus       394 vr~~a~~al~~~~~~~  409 (412)
                      ||..+-+++..+....
T Consensus       502 vr~~a~~~i~~fl~kl  517 (690)
T KOG1243|consen  502 VRDTAEKAIRQFLEKL  517 (690)
T ss_pred             hhhHHHHHHHHHHhhh
Confidence            9999999998887654

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=8.9e-10  Score=101.16  Aligned_cols=356  Identities=14%  Similarity=0.146  Sum_probs=200.5

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP  108 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  108 (412)
                      .+.+.+=..|+++.+|..|++..+.+-    .+.....+...+....+|.++.+|+.++-+..++...-..-....-+++
T Consensus        88 vnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~  163 (734)
T KOG1061|consen   88 VNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVD  163 (734)
T ss_pred             hhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhH
Confidence            344444456666666666655544332    2334555666666666666666666666666666554444444445566


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHhhC---------------------------------------HHH-HHHhhhhh
Q 015150          109 AYVRLLRDNEAEVRIAAAGKVTKICRILN---------------------------------------PEL-AIQHILPC  148 (412)
Q Consensus       109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---------------------------------------~~~-~~~~~~~~  148 (412)
                      .+..++.|+++.|-..|+.++..+.+.-+                                       ++. -...++..
T Consensus       164 ~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r  243 (734)
T KOG1061|consen  164 ALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICER  243 (734)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHH
Confidence            66666666666666666666666654432                                       110 01112222


Q ss_pred             HHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh---------
Q 015150          149 VKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---------  217 (412)
Q Consensus       149 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~---------  217 (412)
                      +...+++.+..|-..+.+.+......+..  +.....+-|.+..++.. .+++..-+++.+..+....+.-         
T Consensus       244 ~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff  322 (734)
T KOG1061|consen  244 LTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLILQKRPEILKVEIKVFF  322 (734)
T ss_pred             hhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHHHhChHHHHhHhHeee
Confidence            22222333333333333333333222221  11112233333333333 3477777777776665442210         


Q ss_pred             -----------------------hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCch
Q 015150          218 -----------------------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKV  274 (412)
Q Consensus       218 -----------------------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  274 (412)
                                             ...+.+++-+.....+-+...-..++.+++.++......   ...++.++.+++-..
T Consensus       323 ~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~  399 (734)
T KOG1061|consen  323 CKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKV  399 (734)
T ss_pred             eecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcc
Confidence                                   011334455555566666666666778888777665443   457778888888777


Q ss_pred             hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc
Q 015150          275 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP  353 (412)
Q Consensus       275 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~  353 (412)
                      ..|.+.+...+..+...+...+  +.+.+.+-..+.. .++..|.+.++.+|+-++.++..   .+++..+++...|...
T Consensus       400 ~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~  474 (734)
T KOG1061|consen  400 DYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETA  474 (734)
T ss_pred             cceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchH
Confidence            7777778888888887775542  4555555544443 34678999999999999888764   5678888999999999


Q ss_pred             hHHHHHHHHHHHHhhhhchHHHHhhHHHHH-HhhcCC-CCccHHHHHH
Q 015150          354 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCL-VELSED-PDVDVRFFAT  399 (412)
Q Consensus       354 ~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l-~~l~~d-~~~~vr~~a~  399 (412)
                      .|+...+.+.-+++-..++  -++.++..+ .....| .++|+|..+.
T Consensus       475 ~Vql~LLta~ik~Fl~~p~--~tq~~l~~vL~~~~~d~~~~dlrDr~l  520 (734)
T KOG1061|consen  475 EVQLELLTAAIKLFLKKPT--ETQELLQGVLPLATADTDNPDLRDRGL  520 (734)
T ss_pred             HHHHHHHHHHHHHHhcCCc--cHHHHHHHHHhhhhccccChhhhhhHH
Confidence            9998888777666544443  223333333 334444 3347776654

>TIGR02270 conserved hypothetical protein

Probab=99.30  E-value=1.7e-09  Score=96.38  Aligned_cols=240  Identities=15%  Similarity=0.071  Sum_probs=163.5

Q ss_pred             HHHHHHHhc-cCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150           28 IMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV  106 (412)
Q Consensus        28 l~~~l~~l~-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  106 (412)
                      .++.+...+ .++++.++..++..+....        ....+..+...+.|++..||..++++|+.+..        ...
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a  118 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA  118 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence            445555556 5666777766555543211        11236777788888888899999999987653        567


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP  186 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  186 (412)
                      .+.+..+++++++.||..++.+++....         .-.+.+..+++|+++.||..++.+++.+..        ....|
T Consensus       119 ~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~  181 (410)
T TIGR02270       119 EPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPR--------RLSES  181 (410)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence            7888888899999999888877775221         123566677789999999999999988763        24556


Q ss_pred             HHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHH
Q 015150          187 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC  266 (412)
Q Consensus       187 ~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  266 (412)
                      .+...+.|.++.||..++.++..+..        ....+.+..+..+..+..+..+...+...    |.    +..++.+
T Consensus       182 ~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L  245 (410)
T TIGR02270       182 TLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL  245 (410)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence            67777889999999998888866643        12334455544555555544444333222    22    2466677


Q ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150          267 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA  328 (412)
Q Consensus       267 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~  328 (412)
                      ..+++|+.  +|..++.+++.+..        ...++.+...+.|+.  ++..+-+++..+.
T Consensus       246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence            78888865  88889888886543        446777888787765  6777888887775

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.29  E-value=1.2e-10  Score=105.76  Aligned_cols=255  Identities=13%  Similarity=0.196  Sum_probs=211.7

Q ss_pred             cCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhc
Q 015150          114 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK  193 (412)
Q Consensus       114 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  193 (412)
                      +.-.+.+-|..-...|....+.++++.....++|.+...+.-.+  --..+...+-.++..+..+.+...++|.+.++.+
T Consensus       263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~  340 (690)
T KOG1243|consen  263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK  340 (690)
T ss_pred             cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence            34445667888888888888888899888889999988764322  1112333344455555556677889999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCc
Q 015150          194 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK  273 (412)
Q Consensus       194 d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  273 (412)
                      ..+..+|...++.+..+...+.++.+.+.++|.+...+.|.++.+|...+..+..++..++...+...++..+-.+-.|+
T Consensus       341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~  420 (690)
T KOG1243|consen  341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE  420 (690)
T ss_pred             CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999888888888888888899


Q ss_pred             hhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc
Q 015150          274 VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP  353 (412)
Q Consensus       274 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~  353 (412)
                      +..+|.....+++++.....+......+...+...++|+-..-|.+++..+....+.+.......+|+|.+.-+.-|++.
T Consensus       421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~  500 (690)
T KOG1243|consen  421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK  500 (690)
T ss_pred             cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence            99999999999999887765443333444566667889888899999999999999888888899999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhh
Q 015150          354 NIKFNVAKVLQSLIPIV  370 (412)
Q Consensus       354 ~vR~~~~~~l~~l~~~~  370 (412)
                      .||..+.+++.......
T Consensus       501 ~vr~~a~~~i~~fl~kl  517 (690)
T KOG1243|consen  501 TVRDTAEKAIRQFLEKL  517 (690)
T ss_pred             chhhHHHHHHHHHHhhh
Confidence            99999999988776543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=1.6e-08  Score=93.14  Aligned_cols=370  Identities=15%  Similarity=0.154  Sum_probs=187.2

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150           27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV  106 (412)
Q Consensus        27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  106 (412)
                      .+.+.+.+=+++.+.-+-..|+-+++.++   ++| ....+.|.+..+++++++.+|+.|+.|..++.+..++-.  ..+
T Consensus       107 LltNslknDL~s~nq~vVglAL~alg~i~---s~E-mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~--e~f  180 (866)
T KOG1062|consen  107 LLTNSLKNDLNSSNQYVVGLALCALGNIC---SPE-MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV--EHF  180 (866)
T ss_pred             HHHHHHHhhccCCCeeehHHHHHHhhccC---CHH-HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--HHh
Confidence            34445555555656555555555555444   233 566677777777777777777777777777766544322  345


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-HHH----HhhhhhHHHhcc-----------CCcHHHHHHHHHHHHh
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAI----QHILPCVKELSS-----------DSSQHVRSALATVIMG  170 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~----~~~~~~l~~~~~-----------d~~~~vr~~~~~~l~~  170 (412)
                      ++...+++.+.+..|-.+++..+..+++.-++. ...    ..++..+.++..           =++|..+..+...+.-
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri  260 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI  260 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence            555666666666666555555555555543221 111    111222221111           1244444444433333


Q ss_pred             cCcccCh-hHHH-------------------HhhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchh------------
Q 015150          171 MAPILGK-DATI-------------------EQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID------------  217 (412)
Q Consensus       171 l~~~~~~-~~~~-------------------~~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~------------  217 (412)
                      +.+.-.+ ...+                   .-|...+...+. ++++..|..+++.|++|...-+.+            
T Consensus       261 LGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~  340 (866)
T KOG1062|consen  261 LGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRV  340 (866)
T ss_pred             hcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhh
Confidence            3221100 0000                   112222222211 345666777777777665331111            


Q ss_pred             -----hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150          218 -----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  292 (412)
Q Consensus       218 -----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  292 (412)
                           ...+.--..+.++++|++..+|+-+++..-.+.....-..    ++.-++.+|...+.+.+...+..+..+++.+
T Consensus       341 V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~----mv~eLl~fL~~~d~~~k~~~as~I~~laEkf  416 (866)
T KOG1062|consen  341 VQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV----MVKELLEFLESSDEDFKADIASKIAELAEKF  416 (866)
T ss_pred             hcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence                 1123445678889999999999999988877776544332    4444556666667888998888999999888


Q ss_pred             Chh--hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHh-ccccchh--HHHHhhHHHHHh-hc-CCCCchHHHHHHHHHHH
Q 015150          293 GPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLL-APVMGSE--ITCSQLLPVVIN-AS-KDRVPNIKFNVAKVLQS  365 (412)
Q Consensus       293 ~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l-~~~~~~~--~~~~~il~~l~~-~l-~d~~~~vR~~~~~~l~~  365 (412)
                      .++  |+.+..+..+.    ....-+|.-++..+-.+ +..++..  +....+.-.+.. .+ .-+.+..-..+.|++|+
T Consensus       417 aP~k~W~idtml~Vl~----~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGE  492 (866)
T KOG1062|consen  417 APDKRWHIDTMLKVLK----TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGE  492 (866)
T ss_pred             CCcchhHHHHHHHHHH----hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhh
Confidence            764  44443333332    22222333333333333 2222322  111112111111 11 11234445677788887


Q ss_pred             Hhhhhch--------HHHHhhHHHHHHhhc--CCCCccHHHHHHHHHHHhHHhhh
Q 015150          366 LIPIVDQ--------SVVEKSIRPCLVELS--EDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       366 l~~~~~~--------~~~~~~i~~~l~~l~--~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      ...-+-+        .+..+++...+..++  ...+..++..+..|+-++...++
T Consensus       493 YGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~  547 (866)
T KOG1062|consen  493 YGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH  547 (866)
T ss_pred             hhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence            7632211        122244555554432  12336677777777776665443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.27  E-value=4.9e-10  Score=93.74  Aligned_cols=188  Identities=20%  Similarity=0.231  Sum_probs=130.9

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HH---HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK  177 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  177 (412)
                      .+.+.+..--++.+|..|..++..+..+.....+.    .+   ...+++.+...++|....|...++.++..++..+|.
T Consensus         7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~   86 (228)
T PF12348_consen    7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS   86 (228)
T ss_dssp             GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence            34444544456778888888888888877655111    12   123445666677787888889999999999988877


Q ss_pred             hH--HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc-hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC
Q 015150          178 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  254 (412)
Q Consensus       178 ~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~-~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  254 (412)
                      ..  ..+.++|.+.+.+.|....+|..+..+|..++...+ ...   .+.+.+....++++|.+|..++.++..+....+
T Consensus        87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~---~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen   87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK---ILLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H---HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            53  347889999999999999999999999999998876 222   237888889999999999999999999988887


Q ss_pred             ---hh----hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 015150          255 ---VG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  295 (412)
Q Consensus       255 ---~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  295 (412)
                         ..    ...+.+.+.+..++.|.+++||.+|-.++..+.+.+|..
T Consensus       164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence               21    123668999999999999999999999999999888764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=99.22  E-value=1.5e-09  Score=103.30  Aligned_cols=189  Identities=20%  Similarity=0.248  Sum_probs=156.2

Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC---hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW  296 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  296 (412)
                      .+.+-+.+..-+.+++|.-|..+++.+....+.-+   ...+...+...+-..+.|.|..|-..|+..+..++..++..+
T Consensus       251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~  330 (815)
T KOG1820|consen  251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF  330 (815)
T ss_pred             hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence            45566777888899999999999998887776655   122334444555556889999999999999999999887653


Q ss_pred             --hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch--
Q 015150          297 --AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--  372 (412)
Q Consensus       297 --~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~--  372 (412)
                        +...++|.+++.+++....+|.+++.++..++...+    ...+.+.+...+++++|.+|..+...+......+++  
T Consensus       331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~  406 (815)
T KOG1820|consen  331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT  406 (815)
T ss_pred             HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence              346788999999999999999999999999887544    456788888999999999999999999999888873  


Q ss_pred             --HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhCC
Q 015150          373 --SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG  412 (412)
Q Consensus       373 --~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~~  412 (412)
                        ......+.|.+....+|.+.+||.++..+++.+..+.|++
T Consensus       407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~  448 (815)
T KOG1820|consen  407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE  448 (815)
T ss_pred             cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence              2345789999999999999999999999999999998863

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=1.4e-08  Score=91.51  Aligned_cols=242  Identities=14%  Similarity=0.160  Sum_probs=166.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhhCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcc
Q 015150          116 DNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD  194 (412)
Q Consensus       116 d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  194 (412)
                      +.....|..+......++..-..- ...++++.-+..+..|.+..||..+++.+-.+.+-+.   ..+.+.....+.+.|
T Consensus       169 ~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~lsD  245 (823)
T KOG2259|consen  169 ISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKHLSD  245 (823)
T ss_pred             cccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHHhcc
Confidence            333445555555554443321111 1233455557778889999999999999888776221   124566777888999


Q ss_pred             cChHHHHHHHHHHHHHHHhhc--------hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH----H
Q 015150          195 EFPDVRLNIISKLDQVNQVIG--------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK----L  262 (412)
Q Consensus       195 ~~~~vr~~~~~~l~~i~~~~~--------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~----l  262 (412)
                      ++..||.+|++.+.-+++...        .....+..+..+...+.|-+|.||..+.+.++.+-.... +.+.+.    +
T Consensus       246 ~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~i~QTLdKKl  324 (823)
T KOG2259|consen  246 DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EIIQQTLDKKL  324 (823)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HHHHHHHHHHH
Confidence            999999999998888876651        112345677788888999999999999999987754321 111111    1


Q ss_pred             H--------------------------------------------------HHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150          263 G--------------------------------------------------ALCMQWLKDKVYSIRDAAANNVKRLAEEF  292 (412)
Q Consensus       263 ~--------------------------------------------------~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  292 (412)
                      +                                                  ..++..+.|+-.+||.+|...+..++.. 
T Consensus       325 ms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-  403 (823)
T KOG2259|consen  325 MSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-  403 (823)
T ss_pred             hhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-
Confidence            1                                                  2344456777888999998888887753 


Q ss_pred             ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          293 GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       293 ~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                       ...+....+..+...++|.-..+|..++.++..++..+.   ..+..++.++..+.|.+++||.+.-..|...
T Consensus       404 -sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  404 -SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA  473 (823)
T ss_pred             -CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence             223455677888888888888899999888888876533   4567788888888898889987776666543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=8.3e-07  Score=81.25  Aligned_cols=218  Identities=14%  Similarity=0.125  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcc
Q 015150           24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR  103 (412)
Q Consensus        24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~  103 (412)
                      ....+-+-+..++++..+.+|+.|+-++-.+.-..++.  ...-+|-+..-+.|+|+.|..+++..+..+++..+.... 
T Consensus       141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence            34556666677788777888887777776666554332  345667777778888888888888888888876554432 


Q ss_pred             cchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc-----c-C
Q 015150          104 SDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI-----L-G  176 (412)
Q Consensus       104 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-----~-~  176 (412)
                       .+-|.+.+++. ..+..+-...++.++++...- | .....++|.+..++...+.  -....+|+..+...     . .
T Consensus       218 -~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE-P-RLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d  292 (877)
T KOG1059|consen  218 -QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE-P-RLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSD  292 (877)
T ss_pred             -cccHHHHHHHhccCCCeehHHHHHHHhhccccC-c-hhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCC
Confidence             35566666543 222334344444444443321 1 1233466666666543321  11222333332211     1 1


Q ss_pred             hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150          177 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  251 (412)
Q Consensus       177 ~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  251 (412)
                      .....+..+.-+..++.|+|+..+.-++-+++.+++.- +.. ....-..+.+++.|.++.+|.-++..+..+..
T Consensus       293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH-p~~-Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH-PKA-VQAHKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC-HHH-HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence            22233455666777788888888888887887776542 222 23445667788888888888887777766553

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.1e-07  Score=87.86  Aligned_cols=290  Identities=17%  Similarity=0.180  Sum_probs=157.9

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhh
Q 015150           69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC  148 (412)
Q Consensus        69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  148 (412)
                      ..+.+-+++++.-|--.|+-+++.++   +.+. ..++.|.+.++++..++.||+.|+.|..++....++-  .+++++.
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i~---s~Em-ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~~  183 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNIC---SPEM-ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVIA  183 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhccC---CHHH-hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhHH
Confidence            34444555566555555555555443   3444 3678999999999999999999999999988765543  4667888


Q ss_pred             HHHhccCCcHHHHHHHHHHHHhcCcccChhH-HHHhhHHHHHHhhcc---------------cChHHHHHHHHHHHHHHH
Q 015150          149 VKELSSDSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQ  212 (412)
Q Consensus       149 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d---------------~~~~vr~~~~~~l~~i~~  212 (412)
                      ..+++.+++..|-.+.+..+..++..-.... ..+.++|.|...+++               ++|..+...++.|.-+++
T Consensus       184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq  263 (866)
T KOG1062|consen  184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ  263 (866)
T ss_pred             HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence            8889999998888888888777775432211 113455665555532               457777777766666654


Q ss_pred             hhchhhHHhhHHHHHHHHhcCC--CchHHHH-HHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 015150          213 VIGIDLLSQSLLPAIVELAEDR--HWRVRLA-IIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  289 (412)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~~d~--~~~vr~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  289 (412)
                      .-. + ..+.+-..+.+.....  +-.+-.+ ..+++..+........+...-..++-++|..++.++|.-|+..|...+
T Consensus       264 ~d~-d-aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V  341 (866)
T KOG1062|consen  264 NDA-D-ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV  341 (866)
T ss_pred             CCc-c-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence            411 1 1122222232322211  1111111 112222222222222233333444455555555555555555555544


Q ss_pred             HHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150          290 EEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  369 (412)
Q Consensus       290 ~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  369 (412)
                      ..=  +...+.--..+.+.++|++..+|..+++..-.+...-......    ..++.++...++..|..++.-+..++..
T Consensus       342 ~~d--~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv----~eLl~fL~~~d~~~k~~~as~I~~laEk  415 (866)
T KOG1062|consen  342 QQD--PTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMV----KELLEFLESSDEDFKADIASKIAELAEK  415 (866)
T ss_pred             cCC--cHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHH----HHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            321  1122334455666666666666666666666655433322223    3333333333455666666666666655


Q ss_pred             hch
Q 015150          370 VDQ  372 (412)
Q Consensus       370 ~~~  372 (412)
                      +.|
T Consensus       416 faP  418 (866)
T KOG1062|consen  416 FAP  418 (866)
T ss_pred             cCC
Confidence            555

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.15  E-value=1.3e-06  Score=86.35  Aligned_cols=400  Identities=18%  Similarity=0.224  Sum_probs=224.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR   81 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~   81 (412)
                      +.+|-.|.+|+..++..-+.=-....+...+-.-+.|....||.+|++.+|...-..  .+........+..-..|+...
T Consensus       830 ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~--~e~~~qyY~~i~erIlDtgvs  907 (1692)
T KOG1020|consen  830 IALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI--PELIFQYYDQIIERILDTGVS  907 (1692)
T ss_pred             HHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc--HHHHHHHHHHHHhhcCCCchh
Confidence            578999999999888743221123334444555577888899999999998777553  234456677778888899999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHh-hCH-----H----------------
Q 015150           82 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI-LNP-----E----------------  139 (412)
Q Consensus        82 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~-----~----------------  139 (412)
                      ||+.+++.+..++...++=....++.-.+....+|++..|++.+.+.+.++.-. .+.     .                
T Consensus       908 VRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~  987 (1692)
T KOG1020|consen  908 VRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQV  987 (1692)
T ss_pred             HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHH
Confidence            999999999999986654333445555566667888887888888877765210 000     0                


Q ss_pred             ----HHHH----------------------------hhhhhHHHh------------ccCCcHHHHHHH-HHHHHhcCcc
Q 015150          140 ----LAIQ----------------------------HILPCVKEL------------SSDSSQHVRSAL-ATVIMGMAPI  174 (412)
Q Consensus       140 ----~~~~----------------------------~~~~~l~~~------------~~d~~~~vr~~~-~~~l~~l~~~  174 (412)
                          .+.+                            +.+..+.++            ..+.+..+|..+ +..+..++..
T Consensus       988 d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~Fski 1067 (1692)
T KOG1020|consen  988 DLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKI 1067 (1692)
T ss_pred             HHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhc
Confidence                0000                            011111111            112233344332 2223322211


Q ss_pred             ----cChhHHHHhhHHHH-----------------------HHhhcc-------------------cChHHHHHHHHHHH
Q 015150          175 ----LGKDATIEQLLPIF-----------------------LSLLKD-------------------EFPDVRLNIISKLD  208 (412)
Q Consensus       175 ----~~~~~~~~~l~~~l-----------------------~~~l~d-------------------~~~~vr~~~~~~l~  208 (412)
                          +.+. ....+.|++                       ..++..                   ..-..-..+..+++
T Consensus      1068 rP~Llt~k-hv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~ 1146 (1692)
T KOG1020|consen 1068 RPQLLTKK-HVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLG 1146 (1692)
T ss_pred             CchhccHH-HHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence                1100 011111111                       111111                   11112233445555


Q ss_pred             HHHHhhchh-hHHhhHHHHHHHHh-------cCC----C-chHHHHHHHHhhHHHhhh--------Ch------hhHHHH
Q 015150          209 QVNQVIGID-LLSQSLLPAIVELA-------EDR----H-WRVRLAIIEYIPLLASQL--------GV------GFFDDK  261 (412)
Q Consensus       209 ~i~~~~~~~-~~~~~~~~~l~~~~-------~d~----~-~~vr~~~~~~l~~l~~~~--------~~------~~~~~~  261 (412)
                      .+......+ .+...++..+.+.+       .+.    + +..++ .+.+++.+++.+        |+      +...+.
T Consensus      1147 sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~R-siftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~ 1225 (1692)
T KOG1020|consen 1147 SLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQR-SIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEK 1225 (1692)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH-HHHHHHHHHHhccCCCccCCCccchhhhhhHHHH
Confidence            555432211 11122222222211       111    1 33333 456777777754        22      234566


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc-hHH-HHHHHHHHHHhc-----------
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH-YLY-RMTILQAISLLA-----------  328 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~-~~~-r~~~~~~l~~l~-----------  328 (412)
                      ++..++-+.++.+..+|..|+.++|.++-..+.=.....+...+.+.+.+.+ ... +.-++..+..+.           
T Consensus      1226 v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~ 1305 (1692)
T KOG1020|consen 1226 VLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKG 1305 (1692)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7777777888999999999999999998754432333344444444444332 111 333332222211           


Q ss_pred             -------------------cccchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh
Q 015150          329 -------------------PVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE  385 (412)
Q Consensus       329 -------------------~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~  385 (412)
                                         ...|..    ...+.+++.++..+-|.+..+|..+++.+..+... |- ..--..+|.|..
T Consensus      1306 ~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~Q-GL-VhP~~cvPtLIA 1383 (1692)
T KOG1020|consen 1306 KNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQ-GL-VHPVHCVPTLIA 1383 (1692)
T ss_pred             cchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc-cC-CCccchhhhhee
Confidence                               111111    24667777788888889999999999999877532 10 111367999999


Q ss_pred             hcCCCCccHHHHHHHHHHHhHH
Q 015150          386 LSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       386 l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +.+||....|..|-.-+..+-+
T Consensus      1384 L~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1384 LETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred             ecCChHHHHHHHHHHHHHHHHH
Confidence            9999999999999888877654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1e-06  Score=84.28  Aligned_cols=403  Identities=16%  Similarity=0.129  Sum_probs=223.9

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhc-cCchhhhhhhHHHHHhhcc---
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKL-LEPQDCVAHILPVIVNFSQ---   76 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~-~~~~~~~~~l~~~l~~l~~---   76 (412)
                      ..||..|++.++.+.+..+.+- ....+.-+..+.+-- ++..=..||-+++.++.. +-......+++|++.+.+.   
T Consensus       355 t~VrWSaAKg~grvt~rlp~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~  433 (1133)
T KOG1943|consen  355 TVVRWSAAKGLGRVTSRLPPEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDV  433 (1133)
T ss_pred             chhhHHHHHHHHHHHccCcHHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhh
Confidence            4689999999999999887533 333333322333222 234455788899888865 2223345678888876543   


Q ss_pred             -----CCChHHHHHHHHHHHHHHHHhCCCCccc---chHH-HHHHhcCCChHHHHHHHHHHHHHHHHhhCH---------
Q 015150           77 -----DKSWRVRYMVANQLYELCEAVGPEPTRS---DVVP-AYVRLLRDNEAEVRIAAAGKVTKICRILNP---------  138 (412)
Q Consensus        77 -----d~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------  138 (412)
                           .....||-++|-.+=.+++...+....+   .+.+ .+...+-|++-.+|.+|..++....-..++         
T Consensus       434 ~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis  513 (1133)
T KOG1943|consen  434 RRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLIS  513 (1133)
T ss_pred             hhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhh
Confidence                 2346799999999888888766554333   2333 334467899999999999888654221111         


Q ss_pred             ---------------------HHHHHhhhhhHHHhcc----CCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhc
Q 015150          139 ---------------------ELAIQHILPCVKELSS----DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK  193 (412)
Q Consensus       139 ---------------------~~~~~~~~~~l~~~~~----d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  193 (412)
                                           ..+....-|.+.+++.    +=+..+|..++.++..+...-.+. .....+|.+.....
T Consensus       514 ~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~-~a~~~L~~lld~~l  592 (1133)
T KOG1943|consen  514 TIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY-LADYVLPPLLDSTL  592 (1133)
T ss_pred             hcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh-hcccchhhhhhhhc
Confidence                                 0122223344444443    346688999999999866433322 22233444444443


Q ss_pred             ccChHHHHHHHHHHHHHHHhhc----------hh----------------------------------------------
Q 015150          194 DEFPDVRLNIISKLDQVNQVIG----------ID----------------------------------------------  217 (412)
Q Consensus       194 d~~~~vr~~~~~~l~~i~~~~~----------~~----------------------------------------------  217 (412)
                      ..+...|.....+.+.+...+.          ..                                              
T Consensus       593 s~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~  672 (1133)
T KOG1943|consen  593 SKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQD  672 (1133)
T ss_pred             CCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHH
Confidence            4455666555544444322110          00                                              


Q ss_pred             hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--hhhHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhCh
Q 015150          218 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGP  294 (412)
Q Consensus       218 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~  294 (412)
                      .........+.+...+++ .+|.++.+.++.++...-  .+.....++.-++..+.++ +..+|.....+++.+-..+=.
T Consensus       673 ~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~  751 (1133)
T KOG1943|consen  673 FVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH  751 (1133)
T ss_pred             HHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc
Confidence            000001111112223334 567777777777665441  1111222444445555555 566777666666554422111


Q ss_pred             hhhhhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccch-------hHHHHhhHHHHHhhcCCC----CchHHHHHHHH
Q 015150          295 DWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGS-------EITCSQLLPVVINASKDR----VPNIKFNVAKV  362 (412)
Q Consensus       295 ~~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~-------~~~~~~il~~l~~~l~d~----~~~vR~~~~~~  362 (412)
                      -...+.+...++...... ...-|...+.++..++...+.       +.+.+.++..+-.+..|.    ...||.+++++
T Consensus       752 ~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~a  831 (1133)
T KOG1943|consen  752 RHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKA  831 (1133)
T ss_pred             hHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHH
Confidence            111233444444433332 456788888888888766652       245556666666665554    36699999999


Q ss_pred             HHHHhhhhc-hHHHH----hhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          363 LQSLIPIVD-QSVVE----KSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       363 l~~l~~~~~-~~~~~----~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +..+..... ++.+.    ..++-.+.+..-|.....|.+++.++..+.-
T Consensus       832 l~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~  881 (1133)
T KOG1943|consen  832 LSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVV  881 (1133)
T ss_pred             HHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceee
Confidence            999876554 22222    2233333344455666678888888877653

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.10  E-value=5.2e-06  Score=82.23  Aligned_cols=377  Identities=14%  Similarity=0.114  Sum_probs=215.6

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS  104 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~  104 (412)
                      ....+..+...+..+...+|.-|++++..++.--+.--..+.+...+..-+.|.+..||.++++.+|..+-..+  ....
T Consensus       814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~~  891 (1692)
T KOG1020|consen  814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELIF  891 (1692)
T ss_pred             hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHHH
Confidence            44466667777888889999999999999997644444556677888888999999999999999998775322  2224


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC--cccC---hhH
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA--PILG---KDA  179 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~--~~~~---~~~  179 (412)
                      +....+.+.+.|+.-.||+.+++.+..++...+.-.....+.--+..-.+|.+..+...+.+.+..+=  +.-+   ...
T Consensus       892 qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~  971 (1692)
T KOG1020|consen  892 QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPA  971 (1692)
T ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHH
Confidence            56677778889999999999999999999877665444445555555667877778888877776541  1000   000


Q ss_pred             H---------------------HHhhHHHHHHh-h----c-----------------------------------ccChH
Q 015150          180 T---------------------IEQLLPIFLSL-L----K-----------------------------------DEFPD  198 (412)
Q Consensus       180 ~---------------------~~~l~~~l~~~-l----~-----------------------------------d~~~~  198 (412)
                      .                     .++++-.+.+. .    .                                   ++..+
T Consensus       972 ~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~ 1051 (1692)
T KOG1020|consen  972 KARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESE 1051 (1692)
T ss_pred             HHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccch
Confidence            0                     01111111110 0    0                                   00011


Q ss_pred             HHH-HHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCC-----CchHHHHHHHHhhHHHhhhC--hhhHHHHHHHHHHHHh
Q 015150          199 VRL-NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWL  270 (412)
Q Consensus       199 vr~-~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~-----~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l  270 (412)
                      +|. +.+..|..++.. .+..+.+...-.+..++...     ..++-+.++..+..+.+...  ++.+...+-..+++++
T Consensus      1052 ~~~~~~lstL~~Fski-rP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i 1130 (1692)
T KOG1020|consen 1052 VRLLAYLSTLFVFSKI-RPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRI 1130 (1692)
T ss_pred             hHHHHHHHHHHHHHhc-CchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence            111 111111111111 00001001111222222222     23344445555555444432  3344555666666666


Q ss_pred             cCchhHHHHHHHHHHHHHHHHhChhh-hhhhhHHHHHh-------hhcCC----chHHHHHHHHHHHHhccccc------
Q 015150          271 KDKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVLE-------MINNP----HYLYRMTILQAISLLAPVMG------  332 (412)
Q Consensus       271 ~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~l~~l~~-------~~~~~----~~~~r~~~~~~l~~l~~~~~------  332 (412)
                      -.-+...-..+..+++.++......+ ....++..+.+       ...+.    +...-...+.++|.++..+.      
T Consensus      1131 ~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~ 1210 (1692)
T KOG1020|consen 1131 VKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSN 1210 (1692)
T ss_pred             HhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccC
Confidence            55566666778888888887643221 11222222222       21122    23445566777777765332      


Q ss_pred             --h------hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccH--HHHHHHHH
Q 015150          333 --S------EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDV--RFFATQAL  402 (412)
Q Consensus       333 --~------~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~v--r~~a~~al  402 (412)
                        +      +...++++..+.-+.++..-.+|..++..||.++-.-..-.+...+...+...+.|...++  +..+.+.+
T Consensus      1211 ~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~ 1290 (1692)
T KOG1020|consen 1211 DGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNL 1290 (1692)
T ss_pred             CCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence              1      1345666776766777888999999999999997554443445566666666555544443  34444444


Q ss_pred             HH
Q 015150          403 QS  404 (412)
Q Consensus       403 ~~  404 (412)
                      ..
T Consensus      1291 ~~ 1292 (1692)
T KOG1020|consen 1291 EL 1292 (1692)
T ss_pred             HH
Confidence            33

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=1.5e-06  Score=79.58  Aligned_cols=217  Identities=15%  Similarity=0.130  Sum_probs=152.0

Q ss_pred             hhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHH
Q 015150           63 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI  142 (412)
Q Consensus        63 ~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  142 (412)
                      ...++-+-+..++++.-+-+|+.++-.+-++....++..  ...+|.+.+-+.|+++.|..+|+..+..+++.-+.... 
T Consensus       141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence            556677888899999999999999999888876544332  34688899999999999999999999999987655422 


Q ss_pred             HhhhhhHHHhcc-CCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccCh-HHHHHHHHHHHHHHHh-----h-
Q 015150          143 QHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQV-----I-  214 (412)
Q Consensus       143 ~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~i~~~-----~-  214 (412)
                       .+-|.+.+++. .+|.++-......|+.+...=+.  .-..++|.+.+++..... .+-.   .++..+...     . 
T Consensus       218 -~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~AmSLlY---ECvNTVVa~s~s~g~~  291 (877)
T KOG1059|consen  218 -QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAMSLLY---ECVNTVVAVSMSSGMS  291 (877)
T ss_pred             -cccHHHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHHHHHH---HHHHHheeehhccCCC
Confidence             26688888763 34445566677778777643111  124677888887765432 1111   122222211     1 


Q ss_pred             chhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150          215 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  290 (412)
Q Consensus       215 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  290 (412)
                      +.....+-.+.-+..+++|.++..|+..+-+++.+++.-...  ...-..+++++|.|.+..+|..|+..+-.++.
T Consensus       292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence            112233455667778899999999999999999888765432  23356678999999999999999988877664

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=5.2e-08  Score=89.87  Aligned_cols=361  Identities=14%  Similarity=0.095  Sum_probs=211.8

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150           26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD  105 (412)
Q Consensus        26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  105 (412)
                      ..+.|-+.+...-.+-..++..-.=+..-+...+..  .-..++.+.+-+.|++|.+|..|++.++.+.    .+....+
T Consensus        48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey  121 (734)
T KOG1061|consen   48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--AILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEY  121 (734)
T ss_pred             HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--HHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHH
Confidence            446666666666666667776665555666554432  3457788899999999999999999887653    3345678


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh---hHHHH
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIE  182 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~  182 (412)
                      +...+.++++|.++.||..+..+..++...-.+-.....+++.+..++.|+++.|-..+..++..+.+.-..   -....
T Consensus       122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~  201 (734)
T KOG1061|consen  122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNP  201 (734)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccH
Confidence            899999999999999999999999998766555555667889999999999999999999999988654321   11111


Q ss_pred             hhHHHHHHhhcccChHHHHH-------------------------------------HHHHHHHHHHhhch--hhHHhhH
Q 015150          183 QLLPIFLSLLKDEFPDVRLN-------------------------------------IISKLDQVNQVIGI--DLLSQSL  223 (412)
Q Consensus       183 ~l~~~l~~~l~d~~~~vr~~-------------------------------------~~~~l~~i~~~~~~--~~~~~~~  223 (412)
                      .++..+...+.+....-|..                                     +.+.+-........  +.+...+
T Consensus       202 ~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~  281 (734)
T KOG1061|consen  202 QLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKV  281 (734)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222222222211111111                                     11111111111111  0111111


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh--------------------------------hHHHHHHHHHHHHhc
Q 015150          224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--------------------------------FFDDKLGALCMQWLK  271 (412)
Q Consensus       224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--------------------------------~~~~~l~~~l~~~l~  271 (412)
                      -|.+..++.. .+.+...++..+..+......-                                ...+++++-+...-.
T Consensus       282 ~~pl~tlls~-~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYat  360 (734)
T KOG1061|consen  282 APPLVTLLSS-ESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYAT  360 (734)
T ss_pred             cccceeeecc-cchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhh
Confidence            2222222222 2355665655555554433210                                001122333333334


Q ss_pred             CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC-
Q 015150          272 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-  350 (412)
Q Consensus       272 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-  350 (412)
                      +-+.+.-..++++++.+.......   +..++.++++++-+...+-+.++..+..+...++..  .+.+.+.+...+.. 
T Consensus       361 evD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~--~~~vv~~l~~~~~sl  435 (734)
T KOG1061|consen  361 EVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK--YESVVAILCENLDSL  435 (734)
T ss_pred             hhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc--hhhhhhhhccccccc
Confidence            455565566777777777655433   557777777777443334444445555555444443  24555555544433 


Q ss_pred             CCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHH
Q 015150          351 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA  401 (412)
Q Consensus       351 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~a  401 (412)
                      .+|+.|.+.++.+|..+..+.+.   .+++..+..-..|....|+.....|
T Consensus       436 ~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~~Vql~LLta  483 (734)
T KOG1061|consen  436 QEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETAEVQLELLTA  483 (734)
T ss_pred             CChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchHHHHHHHHHH
Confidence            36788999999999988877663   3455566665666666666554444

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=99.05  E-value=3.1e-06  Score=79.93  Aligned_cols=140  Identities=20%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150           26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD  105 (412)
Q Consensus        26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  105 (412)
                      ..+.|-+.+.....+.++++..-.=+...++..+.+  --...+.+.+-++|+++.+|..+++.++.+-.    .....+
T Consensus        54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~----~el~~~  127 (757)
T COG5096          54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV----KELLGN  127 (757)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh----HHHHHH
Confidence            334444333333445555555444444444444321  22344555555666666666666666554322    233455


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHh-hhhhHHHhccCCcHHHHHHHHHHHHhcC
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH-ILPCVKELSSDSSQHVRSALATVIMGMA  172 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~~~~d~~~~vr~~~~~~l~~l~  172 (412)
                      +++.+.++++|+++.||+.|+.++.++-+. +++.+.+. ....+..++.|++|.|...|..++..+-
T Consensus       128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence            566666666666666666666666655442 22222222 4444455555666666666655555544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=99.05  E-value=6.3e-06  Score=75.20  Aligned_cols=352  Identities=16%  Similarity=0.155  Sum_probs=207.7

Q ss_pred             HHHHHhccCCch---HHHHHHHHhHHHHhhccCc-hhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCC---
Q 015150           30 SIFEELTQDDQD---SVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP---  101 (412)
Q Consensus        30 ~~l~~l~~~~~~---~~r~~a~~~l~~i~~~~~~-~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~---  101 (412)
                      |.+...+.|.++   ........++..++..-.- +.....++..+...++ ..+...-...+.++..+.+....+.   
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~   81 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE   81 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence            344444554443   3445556666666644211 1122233333333332 2356677777888888776654333   


Q ss_pred             ----ccc-chHHHHHHhcC-----CC--hHHHHHHHHHHHHHHHHhhCHHHH---HHhhhhhHHH-----hcc-CCc---
Q 015150          102 ----TRS-DVVPAYVRLLR-----DN--EAEVRIAAAGKVTKICRILNPELA---IQHILPCVKE-----LSS-DSS---  157 (412)
Q Consensus       102 ----~~~-~l~~~l~~~l~-----d~--~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~l~~-----~~~-d~~---  157 (412)
                          +.+ .++|.+.+...     +.  ++.+-..+...+..+...++.+..   .+.+...+..     -+. +.+   
T Consensus        82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~  161 (415)
T PF12460_consen   82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTIS  161 (415)
T ss_pred             hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccc
Confidence                111 26666666542     22  256666677777777777776633   3333333330     000 111   


Q ss_pred             ---HHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh-cccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHh-c
Q 015150          158 ---QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-E  232 (412)
Q Consensus       158 ---~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~-~  232 (412)
                         ...-......+..+-....-. ....++..+..+. +.+++..|..+.+.++.+......+...+.++..+.... .
T Consensus       162 ~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~  240 (415)
T PF12460_consen  162 EQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS  240 (415)
T ss_pred             cccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc
Confidence               111111222333332222111 1233555555553 344589999999999999887655544455555555444 4


Q ss_pred             CCCchHHHHHHHHhhHHHhhh---ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---------------
Q 015150          233 DRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---------------  294 (412)
Q Consensus       233 d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------  294 (412)
                      ......|...+..+.-+.+.+   |.. ....+...+++++.|  +++...|++.++.+....+.               
T Consensus       241 ~~~~~~~~~~~~~~~Wi~KaLv~R~~~-~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLyk  317 (415)
T PF12460_consen  241 SEDSELRPQALEILIWITKALVMRGHP-LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYK  317 (415)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHh
Confidence            455566666666665555543   222 234467777888888  77888899999888764211               


Q ss_pred             hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150          295 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  371 (412)
Q Consensus       295 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  371 (412)
                      ..+...++|.+.+.++..+...|...+.++..+....+..   ...+.++|.+++.+.-+++.+|.+++.++..+...-.
T Consensus       318 QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  318 QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP  397 (415)
T ss_pred             HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence            1233568889998888877678999999999999988876   3567899999999998999999999999998876542


Q ss_pred             hH--HHHhhHHHHHHh
Q 015150          372 QS--VVEKSIRPCLVE  385 (412)
Q Consensus       372 ~~--~~~~~i~~~l~~  385 (412)
                      +-  .+.+.++|.+.+
T Consensus       398 ~~i~~hl~sLI~~LL~  413 (415)
T PF12460_consen  398 ELISEHLSSLIPRLLK  413 (415)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            21  233455555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.03  E-value=1.9e-07  Score=83.26  Aligned_cols=293  Identities=12%  Similarity=0.086  Sum_probs=183.7

Q ss_pred             hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCc
Q 015150           23 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT  102 (412)
Q Consensus        23 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~  102 (412)
                      ++...+-|++..-++|+-+.+-..+++.+..++...-..+.....+..+..++..+....|.++++.|..++...+....
T Consensus       260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~  339 (898)
T COG5240         260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS  339 (898)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence            45666778877788888788888888888887766533335566677777888888888999999999999876544332


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHH
Q 015150          103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE  182 (412)
Q Consensus       103 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  182 (412)
                        ..-+-+..+++|.+-.+-.   .++..+.+.-.++. ...++..+...+.|-+...+..++.++..++-.++.+.  .
T Consensus       340 --vcN~evEsLIsd~Nr~Ist---yAITtLLKTGt~e~-idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~  411 (898)
T COG5240         340 --VCNKEVESLISDENRTIST---YAITTLLKTGTEET-IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--L  411 (898)
T ss_pred             --ecChhHHHHhhcccccchH---HHHHHHHHcCchhh-HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--H
Confidence              2235567788888755544   44444444443442 23455555555555555555556666666655554332  2


Q ss_pred             hhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH
Q 015150          183 QLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  261 (412)
Q Consensus       183 ~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  261 (412)
                      ..+..+.+.+. ...-+.+..++.++..+.++.+..  .+..+..+..+.+|..+  ...++..++.+.+-.+.......
T Consensus       412 s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~  487 (898)
T COG5240         412 SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGK  487 (898)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcch
Confidence            33444444433 445677788888888887775422  24566777777776432  22233344444443322211222


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHh
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLL  327 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l  327 (412)
                      .+-.+.+.+-=++.-||.+|..+|.++.-+.......+.+...+...++|.+..+|..|...+..+
T Consensus       488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~  553 (898)
T COG5240         488 YVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM  553 (898)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence            333344444445677899999999888876665555667777888888888888888887777665

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=2.1e-05  Score=76.49  Aligned_cols=349  Identities=12%  Similarity=0.159  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-----------hhhhhhhHHHHHhhccC------CChHHHHHHH
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-----------QDCVAHILPVIVNFSQD------KSWRVRYMVA   87 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-----------~~~~~~l~~~l~~l~~d------~~~~vR~~~~   87 (412)
                      ...+-+.+...+... ++.|...|..|..+.+...+           .......+|.+.+.-..      +....|...+
T Consensus       516 F~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L  594 (1176)
T KOG1248|consen  516 FTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL  594 (1176)
T ss_pred             HHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence            344555554444443 37888888888888877521           11233356665554332      2234455444


Q ss_pred             HHHH-HHHHHhCCCCcccchHHHHHHhcCCChHHHHHHH----HHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHH
Q 015150           88 NQLY-ELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA----AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS  162 (412)
Q Consensus        88 ~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a----~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~  162 (412)
                      ..+. .+....+.+ ....+...+.+...+.+..++..-    +..+..++++.++..+.. +....-...+..+..++.
T Consensus       595 ~~i~~~~~~~t~~d-v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~-l~~v~~~~e~~~~~~vQk  672 (1176)
T KOG1248|consen  595 EIIRVDYFTVTPTD-VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSK-LFTVDPEFENSSSTKVQK  672 (1176)
T ss_pred             HHHHHHHhhcccHH-HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHH-HHHhhHHhhccccHHHHH
Confidence            4443 222211111 123455555566666655544333    333444455555554433 333333444556889999


Q ss_pred             HHHHHHHhcCcccChhHHH----HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh--HHhhHHHHHHHHhcCCCc
Q 015150          163 ALATVIMGMAPILGKDATI----EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHW  236 (412)
Q Consensus       163 ~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~d~~~  236 (412)
                      -+...+..+......+...    +.+...+.+.+++.....|....++|..+.+..+.+.  +....+|-++-..++.+.
T Consensus       673 K~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~  752 (1176)
T KOG1248|consen  673 KAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNV  752 (1176)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccH
Confidence            9999999888763222222    3455555556666778899999999999988877432  334555555555688888


Q ss_pred             hHHHHHHHHhhHHH--hhh---Chhh---HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhhhhhHHHH
Q 015150          237 RVRLAIIEYIPLLA--SQL---GVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQV  305 (412)
Q Consensus       237 ~vr~~~~~~l~~l~--~~~---~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~l~~l  305 (412)
                      ..|+.+..+|..++  ...   |.+.   ..+.+++.+...+-.+...++...+-++..++..++   .+.....++..+
T Consensus       753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V  832 (1176)
T KOG1248|consen  753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV  832 (1176)
T ss_pred             HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            88998888888777  222   3222   334455555555544445555444556666655443   233456677788


Q ss_pred             HhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHH
Q 015150          306 LEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE  376 (412)
Q Consensus       306 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~  376 (412)
                      .-++...+..++.+|+..+..+...++..   ++.+.++|.++.+.+|..-.+|..+-..+..+...+|.+...
T Consensus       833 ~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe  906 (1176)
T KOG1248|consen  833 CLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE  906 (1176)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            88888999999999999999999988876   567889999999999999999999999999999999987543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=3.4e-06  Score=77.15  Aligned_cols=114  Identities=15%  Similarity=0.096  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcc
Q 015150           24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR  103 (412)
Q Consensus        24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~  103 (412)
                      +...+.+.+.+=+.+.++..-..|+.++++++.+--.+.+..++-.++..  .+...-||+.++-+|-.+.+..++-...
T Consensus       108 l~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~  185 (938)
T KOG1077|consen  108 LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNP  185 (938)
T ss_pred             HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccCh
Confidence            44445555666667777877888999999888663333333334333332  2345789999999999998876655555


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH
Q 015150          104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE  139 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  139 (412)
                      .+....+..+++|.+..|-.++...+..+++..+++
T Consensus       186 ~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~  221 (938)
T KOG1077|consen  186 GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES  221 (938)
T ss_pred             hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH
Confidence            677888999999999999999999998888877665

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=4.3e-05  Score=74.41  Aligned_cols=345  Identities=13%  Similarity=0.122  Sum_probs=224.6

Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC-----------CcccchHHHHHHhcCCC------hHHHHHHHH
Q 015150           64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-----------PTRSDVVPAYVRLLRDN------EAEVRIAAA  126 (412)
Q Consensus        64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~-----------~~~~~l~~~l~~~l~d~------~~~vr~~a~  126 (412)
                      ...+.|.+...+... +..|...|.+|..+.+...+.           .+....+|.++.....+      ....|...+
T Consensus       516 F~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L  594 (1176)
T KOG1248|consen  516 FTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL  594 (1176)
T ss_pred             HHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence            455667666655443 489999999999998864210           12235677777765432      234455555


Q ss_pred             HHHH-HHHHhhCHHHHHHhhhhhHHHhccCCcHHHH----HHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHH
Q 015150          127 GKVT-KICRILNPELAIQHILPCVKELSSDSSQHVR----SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRL  201 (412)
Q Consensus       127 ~~l~-~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr----~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~  201 (412)
                      ..+. ...+..+. .....+...+..+..+.+..++    ......+..++.......+. .+....-...+..+..+|+
T Consensus       595 ~~i~~~~~~~t~~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs-~l~~v~~~~e~~~~~~vQk  672 (1176)
T KOG1248|consen  595 EIIRVDYFTVTPT-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVS-KLFTVDPEFENSSSTKVQK  672 (1176)
T ss_pred             HHHHHHHhhcccH-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHH-HHHHhhHHhhccccHHHHH
Confidence            4444 22222222 2333444555555555544343    33344444444444433333 2222222333444788999


Q ss_pred             HHHHHHHHHHHhhch----hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchh
Q 015150          202 NIISKLDQVNQVIGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVY  275 (412)
Q Consensus       202 ~~~~~l~~i~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~  275 (412)
                      .+.+-|..+.+....    +.....+...+.+-.++...-.|...+.++..+.+..+.+.  +....+|-++-.+++.+.
T Consensus       673 K~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~  752 (1176)
T KOG1248|consen  673 KAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNV  752 (1176)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccH
Confidence            999999988876221    22235566667777777788889999999999999888433  234444444444589999


Q ss_pred             HHHHHHHHHHHHHH--HHh---Chhh---hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcccc---chhHHHHhhHHHH
Q 015150          276 SIRDAAANNVKRLA--EEF---GPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---GSEITCSQLLPVV  344 (412)
Q Consensus       276 ~vr~~a~~~l~~l~--~~~---~~~~---~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~~~~il~~l  344 (412)
                      .-|+.|+.+|..+.  ...   |.+.   ..+.+++.+...+......++.+.+-++..+...+   ..+.+...++..+
T Consensus       753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V  832 (1176)
T KOG1248|consen  753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV  832 (1176)
T ss_pred             HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            99999999988887  322   3222   34566677766655555555555455666554332   2345788899999


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          345 INASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      ..++..+.+.++.+|+..+..+...+...   .+.+.++|.+..++.|....+|..+..-+..+++..|-
T Consensus       833 ~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~  902 (1176)
T KOG1248|consen  833 CLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA  902 (1176)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence            99999999999999999999999888775   45577999999999999999999999999999988763

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=2.4e-06  Score=78.71  Aligned_cols=357  Identities=13%  Similarity=0.119  Sum_probs=201.8

Q ss_pred             HHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHH
Q 015150           30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPA  109 (412)
Q Consensus        30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~  109 (412)
                      +.+.+=++++|+-+|...++.+..+    .+.+....+.|.+.+.++++..-||+.|.-++..|...+. ..+ ++.-..
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~-pDapeL  175 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLI-PDAPEL  175 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhc-CChHHH
Confidence            3445556777777777666555433    2344667788888888888888888888888888776522 111 222222


Q ss_pred             HHH-hcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHH
Q 015150          110 YVR-LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF  188 (412)
Q Consensus       110 l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  188 (412)
                      +.. +..+.++..+..|+-.|..    ..++...+++...+.+ +.+-+......+++.+...+..-  ..-....+..+
T Consensus       176 i~~fL~~e~DpsCkRNAFi~L~~----~D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~--p~~~~~~i~~i  248 (948)
T KOG1058|consen  176 IESFLLTEQDPSCKRNAFLMLFT----TDPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLAN--PAEKARYIRCI  248 (948)
T ss_pred             HHHHHHhccCchhHHHHHHHHHh----cCHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcC--HHHhhHHHHHH
Confidence            222 3345667777777666642    3333333222222221 12223344444555555544311  11123556677


Q ss_pred             HHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH-hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHH
Q 015150          189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  267 (412)
Q Consensus       189 ~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  267 (412)
                      ..++..+++.|+-.++..+..+...  +..+ +..-..+.++ .+.++-.++.....-+..+..  +.+...+.+.--++
T Consensus       249 ~~lL~stssaV~fEaa~tlv~lS~~--p~al-k~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvL  323 (948)
T KOG1058|consen  249 YNLLSSTSSAVIFEAAGTLVTLSND--PTAL-KAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVL  323 (948)
T ss_pred             HHHHhcCCchhhhhhcceEEEccCC--HHHH-HHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHH
Confidence            7777777888887776666555432  2222 2222333333 334555666666666655552  22223344444457


Q ss_pred             HHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhh---cCCchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150          268 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  344 (412)
Q Consensus       268 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l  344 (412)
                      ..|+.++-+||..++...-.+...-..+.....+-..+.+.-   .+.+-..|+..++.+..++-.++.  +...+.|.+
T Consensus       324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l  401 (948)
T KOG1058|consen  324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL  401 (948)
T ss_pred             HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence            788999999999998877777665443333332222333221   234466899999999888876654  577899999


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHHh
Q 015150          345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      ++.+.|.++.--..++..+.+..+.+..-  ...++..+.. +-.=...++-..+.+.+|.-++.
T Consensus       402 l~fisD~N~~aas~vl~FvrE~iek~p~L--r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~  464 (948)
T KOG1058|consen  402 LDFISDSNEAAASDVLMFVREAIEKFPNL--RASIIEKLLETFPQIRSSKICRGALWILGEYCEG  464 (948)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence            99999998876666666666655544431  1122222222 21224455666666666665543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=6.5e-06  Score=75.43  Aligned_cols=253  Identities=11%  Similarity=0.120  Sum_probs=129.1

Q ss_pred             HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc-ChhHHHHhhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchh
Q 015150          140 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-GKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID  217 (412)
Q Consensus       140 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~  217 (412)
                      .........+-+++++.+..+|.-+.+.+..++..- ..+.+... ...+...++ +.|-.+|..++..|..++..-.. 
T Consensus       325 ~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Na-  402 (938)
T KOG1077|consen  325 ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA-  402 (938)
T ss_pred             HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhH-
Confidence            344445566666777888888888888888776542 12222222 455666666 67788888888888888765333 


Q ss_pred             hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh
Q 015150          218 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA  297 (412)
Q Consensus       218 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  297 (412)
                         +.++.-+++++...++.+|...+--+.-+++.+..+.  ...+.+++++++-....|-.....-+-.++-  ..+.+
T Consensus       403 ---k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy--~WyVdviLqLiriagd~vsdeVW~RvvQiVv--Nnedl  475 (938)
T KOG1077|consen  403 ---KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDY--SWYVDVILQLIRIAGDYVSDEVWYRVVQIVV--NNEDL  475 (938)
T ss_pred             ---HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhcccccHHHHHHhheeEe--cchhh
Confidence               3455666667777888888888777777777664432  2233344444321101111111111111110  11111


Q ss_pred             hhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchhH--HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150          298 MQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  373 (412)
Q Consensus       298 ~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  373 (412)
                      ..-.-..+.+.+..+.  ...-.++...+|.+...+..++  --...+..+-+-+.-..+..|.-.+.++-++...+ | 
T Consensus       476 q~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~-P-  553 (938)
T KOG1077|consen  476 QGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF-P-  553 (938)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC-h-
Confidence            1112222333333221  1111222333444433332211  11122333333344445566666666666666543 2 


Q ss_pred             HHHhhHHHHHHhhcCCCCccHHHHHHHHHH
Q 015150          374 VVEKSIRPCLVELSEDPDVDVRFFATQALQ  403 (412)
Q Consensus       374 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~  403 (412)
                      .....+...+....+-.|.++++.|.+=+.
T Consensus       554 Ei~~~v~~vFq~~~n~~D~ElQqRa~EYLq  583 (938)
T KOG1077|consen  554 EIKSNVQKVFQLYSNLIDVELQQRAVEYLQ  583 (938)
T ss_pred             hhhHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence            233455555666566678888888776554

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.95  E-value=7.6e-06  Score=77.35  Aligned_cols=175  Identities=17%  Similarity=0.178  Sum_probs=131.4

Q ss_pred             HHHHHHHh-ccCCchHHHHHHHH-hHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150           28 IMSIFEEL-TQDDQDSVRLLAVE-GCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD  105 (412)
Q Consensus        28 l~~~l~~l-~~~~~~~~r~~a~~-~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  105 (412)
                      .+..+... +.+.++..|..|++ ++..+...    +..+.++|-+.+.....|.++++.+=-.+-.+++.-+.+.  --
T Consensus        19 ~~~~~~sg~l~s~n~~~kidAmK~iIa~M~~G----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL   92 (757)
T COG5096          19 SVAALSSGRLESSNDYKKIDAMKKIIAQMSLG----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL   92 (757)
T ss_pred             HHhhhccccccccChHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH
Confidence            34444444 77777777766554 44444322    2356677777776667889999998888888887544221  13


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHh-h
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ-L  184 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-l  184 (412)
                      .++.+.+-++|+++.+|..|+..++.+    +...+...+++.+.+++.|+++.||+.|+-++..+.+ .+++.+.+. +
T Consensus        93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g~  167 (757)
T COG5096          93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELGL  167 (757)
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhcccH
Confidence            577888889999999999999999864    4556677899999999999999999999999999874 444545544 7


Q ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          185 LPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                      ...+..++.|++|.|..+|..++..+-+.
T Consensus       168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         168 IDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            78888899999999999999999887655

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.94  E-value=1.2e-08  Score=71.11  Aligned_cols=87  Identities=23%  Similarity=0.352  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH--HHhhHHHHHHhhcCCCCc
Q 015150          317 RMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDV  392 (412)
Q Consensus       317 r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~~~  392 (412)
                      |.+++.++..++..++..  .+.+.++|.++..++|+++.||..++++|..+++..+++.  +.+++++.|.++..|+|+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~   82 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE   82 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            667777888887777764  5788899999999999999999999999999988877763  457899999999999999


Q ss_pred             cHHHHHHHHHHH
Q 015150          393 DVRFFATQALQS  404 (412)
Q Consensus       393 ~vr~~a~~al~~  404 (412)
                      +||..| +.+..
T Consensus        83 ~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   83 NVRSAA-ELLDR   93 (97)
T ss_pred             hHHHHH-HHHHH
Confidence            998877 44443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.92  E-value=2e-07  Score=85.64  Aligned_cols=239  Identities=17%  Similarity=0.292  Sum_probs=180.6

Q ss_pred             CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhc-CC
Q 015150          156 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR  234 (412)
Q Consensus       156 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-d~  234 (412)
                      .++.-+....+.|..+...++.......++|.+...+.+.  ...-...-.+-.|.+..+...+...++|.+....+ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            4555677788888888888888888889999998877542  22222233334445555556666788888888877 55


Q ss_pred             CchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhh-cCCc
Q 015150          235 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI-NNPH  313 (412)
Q Consensus       235 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~-~~~~  313 (412)
                      ..+++.-+++.+..+.+....+.+.+.++|++...++|.+..++..+++.+..+.+.+...+..+.++|.+..+. +..+
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            567888888999999999999999999999999999999999999999999999999988888899999998864 4566


Q ss_pred             hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh-c-hHHHHhhHHHHHHhhcCCCC
Q 015150          314 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-D-QSVVEKSIRPCLVELSEDPD  391 (412)
Q Consensus       314 ~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~-~-~~~~~~~i~~~l~~l~~d~~  391 (412)
                      ..++..++-+++.+++.+......+.++|.+... +..+|.+.....+....+.... + .+...+.++|.+..+...+.
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            8899999999999998777766777777766554 4455677777777666554332 2 24455678888888766665


Q ss_pred             ccHHHH
Q 015150          392 VDVRFF  397 (412)
Q Consensus       392 ~~vr~~  397 (412)
                      -.+.+.
T Consensus       522 L~~~Qy  527 (700)
T KOG2137|consen  522 LNGEQY  527 (700)
T ss_pred             ccHHHH
Confidence            555444

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.89  E-value=5.6e-07  Score=72.57  Aligned_cols=220  Identities=19%  Similarity=0.227  Sum_probs=137.9

Q ss_pred             hhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhccc--ChHHHHHHHHHHHHHHHhhchhhHHhhHH
Q 015150          147 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLL  224 (412)
Q Consensus       147 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~i~~~~~~~~~~~~~~  224 (412)
                      ..+.+...|.+...+...+.++++...        ..-+|.+...+.|+  .+.||..+..+|+.++ .       +...
T Consensus        39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-------~~~~  102 (289)
T KOG0567|consen   39 KAITKAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-------PESL  102 (289)
T ss_pred             HHHHHhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-------hhhH
Confidence            333444444455555555555655542        35567777777664  5778888888888886 2       3466


Q ss_pred             HHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhH--------HHHHHHHHHHHHH-------
Q 015150          225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYS--------IRDAAANNVKRLA-------  289 (412)
Q Consensus       225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~--------vr~~a~~~l~~l~-------  289 (412)
                      +.+.++.+|+...||..+..++..+--.-+.... ....|. .+  .|+.+.        +|......-..+.       
T Consensus       103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~-~S--vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF  178 (289)
T KOG0567|consen  103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPY-IS--VDPAPPANLSSVHELRAELLDETKPLFERYRAMF  178 (289)
T ss_pred             HHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCcc-cc--CCCCCccccccHHHHHHHHHhcchhHHHHHhhhh
Confidence            7777777788888887766555544321111000 000010 11  232222        1111111000000       


Q ss_pred             --HHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCC--CchHHHHHHHHHHH
Q 015150          290 --EEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR--VPNIKFNVAKVLQS  365 (412)
Q Consensus       290 --~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--~~~vR~~~~~~l~~  365 (412)
                        .+.|    .+.-+..+.+.+.+++.-.|..+..++|++-.        +.-+|.+.+.|.|.  ++-||-.++.+||.
T Consensus       179 ~LRn~g----~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGa  246 (289)
T KOG0567|consen  179 YLRNIG----TEEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGA  246 (289)
T ss_pred             HhhccC----cHHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHh
Confidence              1111    13456677777788888999999999999852        45577788877664  78899999999999


Q ss_pred             HhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          366 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       366 l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      ++.        +..++.|++.++|+++-||..+.-+|...-
T Consensus       247 Ia~--------e~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  247 IAD--------EDCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             hcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            986        688999999999999999999999988653

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=0.0001  Score=70.61  Aligned_cols=397  Identities=15%  Similarity=0.126  Sum_probs=225.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCch-HHHHHHHHhHHH-HhhccCch-----------hhhhhhH
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGA-LGKLLEPQ-----------DCVAHIL   68 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~r~~a~~~l~~-i~~~~~~~-----------~~~~~l~   68 (412)
                      |.+|++|-..|..+-+..      ..+..++....+|..+ .||++|+-=+.+ +.+++++.           +.+..+.
T Consensus        18 ~~~R~~AE~~L~q~~K~p------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~ir   91 (1010)
T KOG1991|consen   18 AKERKAAEQQLNQLEKQP------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIR   91 (1010)
T ss_pred             hHHHHHHHHHHHHhhcCC------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHH
Confidence            567777777776655422      2233333334555543 468877655554 44555432           2223344


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---------H
Q 015150           69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------E  139 (412)
Q Consensus        69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~  139 (412)
                      .-++..+-....-+|-....++..|...--+ ..|..+++.+..++.+++...-..++.++..+++...-         .
T Consensus        92 enIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~  170 (1010)
T KOG1991|consen   92 ENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLG  170 (1010)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHH
Confidence            4444443333566777777777666543222 45788999999999999999999999999999887541         1


Q ss_pred             HHHHhhhhhHH----HhccCCcHH---HHHHHHHHHHhcCc-ccChhHHHH----hhHHHHHHhhcc--------cCh--
Q 015150          140 LAIQHILPCVK----ELSSDSSQH---VRSALATVIMGMAP-ILGKDATIE----QLLPIFLSLLKD--------EFP--  197 (412)
Q Consensus       140 ~~~~~~~~~l~----~~~~d~~~~---vr~~~~~~l~~l~~-~~~~~~~~~----~l~~~l~~~l~d--------~~~--  197 (412)
                      ...+..+|.+.    .++.+.+..   ....+++.+-.++. .++......    .-+..+...++-        .++  
T Consensus       171 ~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~  250 (1010)
T KOG1991|consen  171 EAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPED  250 (1010)
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhh
Confidence            33444555554    455555443   33334443333221 122222211    122223333321        122  


Q ss_pred             -------HHHHHHHHHHHHHHHhhchhh--------H----Hh----hHHHHHHHHh---cCC---CchHHHHHHHHhhH
Q 015150          198 -------DVRLNIISKLDQVNQVIGIDL--------L----SQ----SLLPAIVELA---EDR---HWRVRLAIIEYIPL  248 (412)
Q Consensus       198 -------~vr~~~~~~l~~i~~~~~~~~--------~----~~----~~~~~l~~~~---~d~---~~~vr~~~~~~l~~  248 (412)
                             -+++-|+..+.++.+..|...        +    .+    .++..+.+.+   ...   .+++-..++..+  
T Consensus       251 R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl--  328 (1010)
T KOG1991|consen  251 RSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFL--  328 (1010)
T ss_pred             cccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH--
Confidence                   355677888888776655221        1    11    1222222221   112   233333333333  


Q ss_pred             HHhhhChhhHHHHHHHHHHHHh-------------------cCchhHHH-------------HHHHHHHHHHHHHhChhh
Q 015150          249 LASQLGVGFFDDKLGALCMQWL-------------------KDKVYSIR-------------DAAANNVKRLAEEFGPDW  296 (412)
Q Consensus       249 l~~~~~~~~~~~~l~~~l~~~l-------------------~d~~~~vr-------------~~a~~~l~~l~~~~~~~~  296 (412)
                       ............+.|.+.-.+                   +|+..-+|             .+|...+-.++.+-|.+.
T Consensus       329 -~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~  407 (1010)
T KOG1991|consen  329 -EQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET  407 (1010)
T ss_pred             -HHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh
Confidence             333333333333333322221                   24444454             356666777777776664


Q ss_pred             hhhhhHHHHHhhhc--------CCchHHHHHHHHHHHHhccccchh-H----HHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150          297 AMQHIVPQVLEMIN--------NPHYLYRMTILQAISLLAPVMGSE-I----TCSQLLPVVINASKDRVPNIKFNVAKVL  363 (412)
Q Consensus       297 ~~~~~l~~l~~~~~--------~~~~~~r~~~~~~l~~l~~~~~~~-~----~~~~il~~l~~~l~d~~~~vR~~~~~~l  363 (412)
                      + ..+++.+...++        ..+++-+..|++.++.++..+.++ .    +..-+.+.+...++++.--.|..+++++
T Consensus       408 l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl  486 (1010)
T KOG1991|consen  408 L-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVL  486 (1010)
T ss_pred             h-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence            4 335565555554        235788899999999998766543 1    2233555666667888888999999999


Q ss_pred             HHHh-hhhchHHHHhhHHHHHHhhc-CCCCccHHHHHHHHHHHhHHhh
Q 015150          364 QSLI-PIVDQSVVEKSIRPCLVELS-EDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       364 ~~l~-~~~~~~~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      +.++ -.+.+.......+.....++ +|++--||.-|+-|+..+...-
T Consensus       487 ~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~  534 (1010)
T KOG1991|consen  487 SQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQ  534 (1010)
T ss_pred             HHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence            9998 55666666677788777755 4999999999999999987653

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.86  E-value=1.8e-08  Score=70.10  Aligned_cols=83  Identities=27%  Similarity=0.369  Sum_probs=62.6

Q ss_pred             HHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCCh
Q 015150           43 VRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE  118 (412)
Q Consensus        43 ~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~  118 (412)
                      .|..++.++..++..++.  ..+.+.++|.++..+.|++++||..++++|.++++..+.+.  ...++++.+.+++.|++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            367777777777777665  34566788888888888888888888888888887766544  34567777788888888


Q ss_pred             HHHHHHH
Q 015150          119 AEVRIAA  125 (412)
Q Consensus       119 ~~vr~~a  125 (412)
                      +.||.+|
T Consensus        82 ~~Vr~~a   88 (97)
T PF12755_consen   82 ENVRSAA   88 (97)
T ss_pred             hhHHHHH
Confidence            8888877

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.83  E-value=2.6e-08  Score=69.51  Aligned_cols=86  Identities=28%  Similarity=0.409  Sum_probs=65.9

Q ss_pred             HHHHHhhh-cCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHH
Q 015150          302 VPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR  380 (412)
Q Consensus       302 l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~  380 (412)
                      +|.+.+.+ +++++.+|..++.+++.+.        .+..+|.+...++|+++.||..++.+|+.+..        +..+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            35667766 7888999999999888543        34678888888899999999999999997742        4577


Q ss_pred             HHHHhhcCC-CCccHHHHHHHHHH
Q 015150          381 PCLVELSED-PDVDVRFFATQALQ  403 (412)
Q Consensus       381 ~~l~~l~~d-~~~~vr~~a~~al~  403 (412)
                      +.|.+++.| ++..||..|..+|+
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhcC
Confidence            777775544 55667888888875

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=3.5e-05  Score=71.38  Aligned_cols=360  Identities=13%  Similarity=0.098  Sum_probs=199.9

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHH---HHhhccCCChHHHHHHHHHHHHHHHHhCCCC
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV---IVNFSQDKSWRVRYMVANQLYELCEAVGPEP  101 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~---l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~  101 (412)
                      -+.++.++.-.+-+.+-..++.-..-+.-+-+.-++....++++-.   +.+-+++|+.-+|-..++.|.++-+    ..
T Consensus        55 p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE----~E  130 (948)
T KOG1058|consen   55 PSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKE----PE  130 (948)
T ss_pred             hHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCc----HH
Confidence            3344444444555555555543322222222222223444443333   3345677888888888887766432    23


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHH----H-hccCCcHHHHHHHHHHHHhcCcccC
Q 015150          102 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK----E-LSSDSSQHVRSALATVIMGMAPILG  176 (412)
Q Consensus       102 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~----~-~~~d~~~~vr~~~~~~l~~l~~~~~  176 (412)
                      ....++|.+..+++.....||+.|+-++..+-+..      .+++|-.-    + +..+.++..++.|.-.+....    
T Consensus       131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~~------~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D----  200 (948)
T KOG1058|consen  131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF------EHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTD----  200 (948)
T ss_pred             HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh------hhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcC----
Confidence            34567888888899999999999988888776642      12222222    2 234566666666655554433    


Q ss_pred             hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh
Q 015150          177 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  256 (412)
Q Consensus       177 ~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  256 (412)
                      ++...+++...+.+. .+=++..+...+..+...+..-+ . .....+..+..++...++.|+..++..+..++..-  .
T Consensus       201 ~ErAl~Yl~~~idqi-~~~~~~LqlViVE~Irkv~~~~p-~-~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p--~  275 (948)
T KOG1058|consen  201 PERALNYLLSNIDQI-PSFNDSLQLVIVELIRKVCLANP-A-EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP--T  275 (948)
T ss_pred             HHHHHHHHHhhHhhc-cCccHHHHHHHHHHHHHHHhcCH-H-HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCH--H
Confidence            222222222222111 11124455555555555554211 1 12456777778888888899988887776665431  1


Q ss_pred             hHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH
Q 015150          257 FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI  335 (412)
Q Consensus       257 ~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~  335 (412)
                      .+.. -...++.++. .++..+..-.+.-|..+..  +.+...+.+.-.++..+..++..+|..++...-.+...-..+.
T Consensus       276 alk~-Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNved  352 (948)
T KOG1058|consen  276 ALKA-AASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVED  352 (948)
T ss_pred             HHHH-HHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHH
Confidence            1111 2222333332 2233344333334444331  1222345566667788889999999999998888776555443


Q ss_pred             HHHhhHHHHHhhc---CCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          336 TCSQLLPVVINAS---KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       336 ~~~~il~~l~~~l---~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      +...+...+.+.-   +|.+-+.|+..++++...+-.+..  +...++|.+...+.|.++.-...+...+..+.+.
T Consensus       353 iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek  426 (948)
T KOG1058|consen  353 IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNEAAASDVLMFVREAIEK  426 (948)
T ss_pred             HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence            3333333333322   344566799999999988776654  4567888888888887776555555555444443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.81  E-value=3.3e-05  Score=73.62  Aligned_cols=369  Identities=15%  Similarity=0.191  Sum_probs=215.3

Q ss_pred             HHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC--CCCcccchH
Q 015150           32 FEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDVV  107 (412)
Q Consensus        32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~  107 (412)
                      +..++...+.-.| .+...|.+++.....+  -....+++.+.+.++..+..+...++..|.+++-...  .......++
T Consensus       255 ~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV  333 (708)
T PF05804_consen  255 LQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV  333 (708)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence            3344444444344 5567788887765432  2345588888888888889999999999988874322  222345689


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHh--hCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHHh
Q 015150          108 PAYVRLLRDNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQ  183 (412)
Q Consensus       108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~  183 (412)
                      |.+.+++..++..++..++..|..++..  .........++|.+..++.|++  .+..+...+..++..-...  .....
T Consensus       334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~Td  411 (708)
T PF05804_consen  334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTD  411 (708)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcc
Confidence            9999999999999999999999988643  2233455668899999998754  4556777777776422111  11235


Q ss_pred             hHHHHHHhhcc-cChHHHHHHHHHHHHHHHhhc-hhhH-HhhHHHHHHHH-hcCCCchHHHHHHHHhhHHHhhhCh--hh
Q 015150          184 LLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIG-IDLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GF  257 (412)
Q Consensus       184 l~~~l~~~l~d-~~~~vr~~~~~~l~~i~~~~~-~~~~-~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~--~~  257 (412)
                      .+|.+.+++-. +++.+...++..+..++..-. .+.+ ...-++.+.+. .+..+    ..+++.+..++.+-|+  ..
T Consensus       412 cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~  487 (708)
T PF05804_consen  412 CIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKEL  487 (708)
T ss_pred             hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHH
Confidence            67877776443 455555544433333322211 0111 11223333332 22222    1233455555555432  12


Q ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh---h-hhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhcccc
Q 015150          258 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---A-MQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVM  331 (412)
Q Consensus       258 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~-~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~  331 (412)
                      +.+.+.++.-..-..++.+....++.+++.+.- .+.+|   + ...++|.+.+.+....  ..+...++..+|.++..-
T Consensus       488 f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~-~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~  566 (708)
T PF05804_consen  488 FVDFIGDLAKIVSSGDSEEFVVECLGILANLTI-PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP  566 (708)
T ss_pred             HHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc-CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence            334344433222233344444444444444331 11121   1 2368888888886543  456677777888776321


Q ss_pred             chh--HHHHhhHHHHHhhcCCCC--chHHHHHHHHHHHHhhhhch-HH--HHhhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 015150          332 GSE--ITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQ-SV--VEKSIRPCLVELSEDPDVDVRFFATQALQS  404 (412)
Q Consensus       332 ~~~--~~~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~-~~--~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  404 (412)
                      ...  -....+.+.+..+++++.  .+.-..++-++..+...-.. +.  ....+...+..++.|++.+||+.+-.+|..
T Consensus       567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldi  646 (708)
T PF05804_consen  567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDI  646 (708)
T ss_pred             HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            111  234567888888876543  45555666666666543111 11  224677888889999999999999999998


Q ss_pred             hHHh
Q 015150          405 KDQV  408 (412)
Q Consensus       405 ~~~~  408 (412)
                      +++.
T Consensus       647 i~e~  650 (708)
T PF05804_consen  647 IAEY  650 (708)
T ss_pred             HHHh
Confidence            8763

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.81  E-value=6.6e-07  Score=85.72  Aligned_cols=337  Identities=14%  Similarity=0.136  Sum_probs=199.2

Q ss_pred             HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc-ch
Q 015150           28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS-DV  106 (412)
Q Consensus        28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~-~l  106 (412)
                      +++....++.++...+|.....++..+...    .........+..+..-..+..-..++.++..++...+...... -.
T Consensus        64 l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~----~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~  139 (815)
T KOG1820|consen   64 LLSFGLKCLDSKRVNIRDTKTQSLLRIGKL----EDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAF  139 (815)
T ss_pred             eccchhhhcccccccccCcchhHHHHHHHh----hhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccc
Confidence            344445555555555565555555555211    1223445555556665666666677777777777666443221 12


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH--------------------------HHHhhhhhHHHhc---cCCc
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--------------------------AIQHILPCVKELS---SDSS  157 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--------------------------~~~~~~~~l~~~~---~d~~  157 (412)
                      ++.+-.+.   +..||..+...+..+.+..|...                          +...--+......   .+++
T Consensus       140 ~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  216 (815)
T KOG1820|consen  140 IKHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPN  216 (815)
T ss_pred             cccCcccc---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCC
Confidence            22222222   34566666666666554443210                          0000000001111   1122


Q ss_pred             HHHHHHHHH--------HHH---hcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--h-hhHHhhH
Q 015150          158 QHVRSALAT--------VIM---GMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-DLLSQSL  223 (412)
Q Consensus       158 ~~vr~~~~~--------~l~---~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~-~~~~~~~  223 (412)
                      +.-+...-.        ...   .-...+........+.+.+..-+.+.++.-|..++..+..++..-+  . ......+
T Consensus       217 ~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll  296 (815)
T KOG1820|consen  217 VKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLL  296 (815)
T ss_pred             hhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHH
Confidence            211111100        000   0111234455566777888888888888888888887777665544  2 2233445


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhh
Q 015150          224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  301 (412)
Q Consensus       224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  301 (412)
                      ...+.....|.+-.+-..++..+..++..++..+  +...+.|.++..+.+....+|..+..++..+.....    ...+
T Consensus       297 ~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~  372 (815)
T KOG1820|consen  297 GILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKM  372 (815)
T ss_pred             HHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHH
Confidence            5555666778888888888888888888776543  335567777888888888888888877777776332    4557


Q ss_pred             HHHHHhhhcCCchHHHHHHHHHHHHhccccc----hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH
Q 015150          302 VPQVLEMINNPHYLYRMTILQAISLLAPVMG----SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV  375 (412)
Q Consensus       302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~  375 (412)
                      .+.+...+++.++++|..+...+.......+    .......+.|.+....+|....||.++..+++.+...+|.+.+
T Consensus       373 ~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~  450 (815)
T KOG1820|consen  373 SEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF  450 (815)
T ss_pred             HHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence            7778888888888888887777777765555    2345677888888888888888888888888888888777644

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=3.8e-05  Score=67.79  Aligned_cols=255  Identities=17%  Similarity=0.121  Sum_probs=154.2

Q ss_pred             hhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHH--HhhHH-HHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhh
Q 015150          146 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLP-IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  222 (412)
Q Consensus       146 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~-~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~  222 (412)
                      +-.+..-..|++..+|..++..++.++...+.+...  ..++. .+..+.++.+.+|...++++|..+.+......+...
T Consensus       260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~  339 (533)
T KOG2032|consen  260 LLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESY  339 (533)
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhh
Confidence            334444467899999999999999999875554322  33444 445556666789999999999999877665544444


Q ss_pred             HHHH---HHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHH---HHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150          223 LLPA---IVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALC---MQWLKDKVYSIRDAAANNVKRLAEEFG  293 (412)
Q Consensus       223 ~~~~---l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~l~~~~~  293 (412)
                      +++.   +..+..+.+.+.|.++...++.++...|.   +.+.+++..-+   .-.++|+++.|-.+.-..+..+..+++
T Consensus       340 ~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~  419 (533)
T KOG2032|consen  340 LLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLV  419 (533)
T ss_pred             chhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhH
Confidence            4443   55678999999999999999999998864   33444443222   223789988776543333333222222


Q ss_pred             hhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150          294 PDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       294 ~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  372 (412)
                      -+. ...+++...    |.. .+.+.-.-..+-.+...+. + ..-.+......+++..-+.||.++....+.....+.+
T Consensus       420 rke-~~~~~q~~l----d~~~~~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~  492 (533)
T KOG2032|consen  420 RKE-LYHLFQESL----DTDMARFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVR  492 (533)
T ss_pred             HHH-HHHHHhhhh----HHhHHHHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHH
Confidence            221 112222211    211 1111111111111221111 0 1112233334455666668888888777766655544


Q ss_pred             H----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          373 S----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       373 ~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      .    ....++...+..+..||-++|+..+.+|++.+..
T Consensus       493 ~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  493 AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            3    2335677788889999999999999999998754

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.78  E-value=4.4e-05  Score=69.73  Aligned_cols=288  Identities=17%  Similarity=0.184  Sum_probs=180.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhCHH-------HHHH-hhhhhHHHhcc-----CC--cHHHHHHHHHHHHhcCcccChhHHH-
Q 015150          118 EAEVRIAAAGKVTKICRILNPE-------LAIQ-HILPCVKELSS-----DS--SQHVRSALATVIMGMAPILGKDATI-  181 (412)
Q Consensus       118 ~~~vr~~a~~~l~~l~~~~~~~-------~~~~-~~~~~l~~~~~-----d~--~~~vr~~~~~~l~~l~~~~~~~~~~-  181 (412)
                      +...-...+.++..+.+....+       .+.+ .++|.+.+...     +.  ++.+-..+...+..+...++.+.-. 
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4455566667776665543221       2222 26676666431     22  2566666666777666666654322 


Q ss_pred             --HhhHHHHHHh-----hc-ccC--hHHHHHHHHHHHHHHHhhchhhH---HhhHHHHHHHH-hcCCCchHHHHHHHHhh
Q 015150          182 --EQLLPIFLSL-----LK-DEF--PDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVEL-AEDRHWRVRLAIIEYIP  247 (412)
Q Consensus       182 --~~l~~~l~~~-----l~-d~~--~~vr~~~~~~l~~i~~~~~~~~~---~~~~~~~l~~~-~~d~~~~vr~~~~~~l~  247 (412)
                        +.+...+...     +. +..  .......+.-+..+...+.++..   ...++..+..+ ....++..|..+++.+.
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la  215 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA  215 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence              2333333300     00 111  11233333444444444443322   12344444444 34456899999999999


Q ss_pred             HHHhhhChhhHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhC--hhhhhhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150          248 LLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFG--PDWAMQHIVPQVLEMINNPHYLYRMTILQAI  324 (412)
Q Consensus       248 ~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l  324 (412)
                      .++.........+.++..+.... .......|..++..+..+.+.+=  .+.....++..+.+.+.+  ..+...+.+.+
T Consensus       216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f  293 (415)
T PF12460_consen  216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF  293 (415)
T ss_pred             HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence            99988755444444555555444 55566678888888877776541  122245677888888887  45667778888


Q ss_pred             HHhcccc--------c-------hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH---HhhHHHHHHhh
Q 015150          325 SLLAPVM--------G-------SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV---EKSIRPCLVEL  386 (412)
Q Consensus       325 ~~l~~~~--------~-------~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~---~~~i~~~l~~l  386 (412)
                      +.+..-.        +       +..++..++|.+.+..++.....|..-+.+++.+.+.+....+   .+.++|.+.+.
T Consensus       294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs  373 (415)
T PF12460_consen  294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS  373 (415)
T ss_pred             hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            7775331        1       2346778999999999888878999999999999998887643   46799999998


Q ss_pred             cCCCCccHHHHHHHHHHHhHH
Q 015150          387 SEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       387 ~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ++-+|.+++..+..++..+..
T Consensus       374 L~~~~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  374 LSLPDADVLLSSLETLKMILE  394 (415)
T ss_pred             hCCCCHHHHHHHHHHHHHHHH
Confidence            888999999999999887765

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.77  E-value=1.3e-05  Score=70.73  Aligned_cols=253  Identities=16%  Similarity=0.109  Sum_probs=153.0

Q ss_pred             HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh--hhhh-hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150           28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD--CVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS  104 (412)
Q Consensus        28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~--~~~~-l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~  104 (412)
                      ++..+..-..|++..+|..|+.+++.++...+++.  ..+. +..++..+..+.+..|...++.+|..+...........
T Consensus       259 ~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~  338 (533)
T KOG2032|consen  259 VLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLES  338 (533)
T ss_pred             HHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhh
Confidence            33344444568888999999999999999966642  2233 44455567777788999999999999988877666555


Q ss_pred             chHHH---HHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHH----hhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150          105 DVVPA---YVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQ----HILPCVKELSSDSSQHVRSALATVIMGMAPI  174 (412)
Q Consensus       105 ~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~----~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  174 (412)
                      .+++.   +..+..|+++.+|.+++..++.+++..+..   .+.+    ...|++. .++|+++.|-.++-..+......
T Consensus       339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lll-hl~d~~p~va~ACr~~~~~c~p~  417 (533)
T KOG2032|consen  339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLL-HLQDPNPYVARACRSELRTCYPN  417 (533)
T ss_pred             hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccccee-eeCCCChHHHHHHHHHHHhcCch
Confidence            55554   455788999999999999999999887542   2222    2333333 36899998876554444333333


Q ss_pred             cChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh---chhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150          175 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  251 (412)
Q Consensus       175 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~---~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  251 (412)
                      +    ..+.+...+.+.+ |.+-. |..+..+  .++..+   .++.. ..+......+++...+.+|.++...-..+..
T Consensus       418 l----~rke~~~~~q~~l-d~~~~-~~q~Fyn--~~c~~L~~i~~d~l-~~~~t~~~~~f~sswe~vr~aavl~t~~~vd  488 (533)
T KOG2032|consen  418 L----VRKELYHLFQESL-DTDMA-RFQAFYN--QWCIQLNHIHPDIL-MLLLTEDQHIFSSSWEQVREAAVLKTTRSVD  488 (533)
T ss_pred             h----HHHHHHHHHhhhh-HHhHH-HHHHHHH--HHHHHHhhhCHHHH-HHHHHhchhheecchHHHHHHHHHHHHHHHH
Confidence            2    3333334444444 32221 3222211  111111   11111 2222333334444444788877766655554


Q ss_pred             hhChhh----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150          252 QLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  290 (412)
Q Consensus       252 ~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  290 (412)
                      ...+..    ...++...+-.+..|+-++|+..+.++++.+..
T Consensus       489 ~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  489 SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            443322    224455556667789999999999988877653

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=7.5e-05  Score=62.55  Aligned_cols=339  Identities=16%  Similarity=0.172  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh-------hhhhhHHHHHhhccCCCh
Q 015150            8 AATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-------CVAHILPVIVNFSQDKSW   80 (412)
Q Consensus         8 a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-------~~~~l~~~l~~l~~d~~~   80 (412)
                      .+.++..+.+...+-++.+.++|.++.-+..++..++-.+|+.++.+.+......       ....+++.+..++...+.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            4566666666665666778889999888888888899999999999988876322       235588889999888899


Q ss_pred             HHHHHHHHHHHHHHHHhC--CCCcccchHHHH--HHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhc
Q 015150           81 RVRYMVANQLYELCEAVG--PEPTRSDVVPAY--VRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS  153 (412)
Q Consensus        81 ~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l--~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~  153 (412)
                      .|-+++.+.+..++..-.  ...+..++++-+  ..+.--.+.-+|....+.+..+....+..   --...++..+..-+
T Consensus       143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl  222 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL  222 (524)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence            999999999998875311  001111111111  11111123456666666666655433221   12334555555444


Q ss_pred             cC-CcHHHHHHHHHHHHhcCccc-ChhHH-HHhhHHHHHHhhc--ccChHHHHHHHHHHHHHHHhhchhhHHh-------
Q 015150          154 SD-SSQHVRSALATVIMGMAPIL-GKDAT-IEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQ-------  221 (412)
Q Consensus       154 ~d-~~~~vr~~~~~~l~~l~~~~-~~~~~-~~~l~~~l~~~l~--d~~~~vr~~~~~~l~~i~~~~~~~~~~~-------  221 (412)
                      +. .+.-|+..+.+....++..- |.+.. .+.++..+.+.+.  |.+|.-.   .+++..+++.+|.+.+.+       
T Consensus       223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfek---fralmgfgkffgkeaimdvseeaic  299 (524)
T KOG4413|consen  223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEK---FRALMGFGKFFGKEAIMDVSEEAIC  299 (524)
T ss_pred             cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHH---HHHHHHHHHHhcchHHhhcCHHHHH
Confidence            43 67788888888888776543 22222 2456666766654  4445433   334555555555433211       


Q ss_pred             ----hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-ChhhHHH----HHHHHHHHHhcCch-hHHHHHHHHHHHHHHHH
Q 015150          222 ----SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDD----KLGALCMQWLKDKV-YSIRDAAANNVKRLAEE  291 (412)
Q Consensus       222 ----~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~~----~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~  291 (412)
                          ..+.-..++.+..++....+++.+++.+.... |.+.+..    ..-.++.. ..|.+ ..-..+++++|..+...
T Consensus       300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllar-afdqnahakqeaaihaLaaIage  378 (524)
T KOG4413|consen  300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLAR-AFDQNAHAKQEAAIHALAAIAGE  378 (524)
T ss_pred             HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHH-HhcccccchHHHHHHHHHHhhcc
Confidence                12222345567778888888888888887655 3322221    11112222 22333 23455666777666543


Q ss_pred             hChhhhhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150          292 FGPDWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       292 ~~~~~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  368 (412)
                      .-.+.  +        -..|..  .+.|.....+..+-.+ +       .=+..++..++-|.|++|.++.+++..++.
T Consensus       379 lrlkp--e--------qitDgkaeerlrclifdaaaqstk-l-------dPleLFlgilqQpfpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  379 LRLKP--E--------QITDGKAEERLRCLIFDAAAQSTK-L-------DPLELFLGILQQPFPEIHCAALKTFTAIAA  439 (524)
T ss_pred             ccCCh--h--------hccccHHHHHHHHHHHHHHhhccC-C-------ChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence            31110  0        112322  2233332222222111 1       113345666778889999999999888763

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=3.9e-05  Score=71.44  Aligned_cols=251  Identities=14%  Similarity=0.151  Sum_probs=122.8

Q ss_pred             hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150          144 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  223 (412)
Q Consensus       144 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~  223 (412)
                      .+.+++..++.++...|-..++.++..+....+.+...  -+..+..+++......|.++.+.|..++-..+.-.  ...
T Consensus       245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~c  320 (865)
T KOG1078|consen  245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVC  320 (865)
T ss_pred             hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--ccc
Confidence            35566666677777777777777766665444333211  34455556777777888888888877764422100  000


Q ss_pred             HHHHHHHhcCCCchH-----------------------------------HHHHHHHhhHHHhhhChhhHHHHHHHHHHH
Q 015150          224 LPAIVELAEDRHWRV-----------------------------------RLAIIEYIPLLASQLGVGFFDDKLGALCMQ  268 (412)
Q Consensus       224 ~~~l~~~~~d~~~~v-----------------------------------r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  268 (412)
                      -.-+..+..|.+-.+                                   +...+.++..++..++..  ...+++.+.+
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~  398 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSN  398 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHH
Confidence            011111222222111                                   111111111111111110  1223333333


Q ss_pred             HhcC-chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhh
Q 015150          269 WLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA  347 (412)
Q Consensus       269 ~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~  347 (412)
                      +|.+ ...+-..+...++..+++....  ..+..+..+.+++.|..  .+.-+...+..+..-.+....-...+..+.+.
T Consensus       399 ~Lr~eGg~e~K~aivd~Ii~iie~~pd--sKe~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNR  474 (865)
T KOG1078|consen  399 MLREEGGFEFKRAIVDAIIDIIEENPD--SKERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNR  474 (865)
T ss_pred             HHHhccCchHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhh
Confidence            3332 2233444444444444432211  12333344444444432  12233333333332222111111122222222


Q ss_pred             cCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          348 SKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       348 l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      .-=.+..||.++..++.++.  .+.+...+.|.-.++.+++|+|.+||..|..++..+.
T Consensus       475 viLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  475 VILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            22235679999999999998  4455555678888899999999999999999888775

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.75  E-value=2.3e-05  Score=74.35  Aligned_cols=129  Identities=12%  Similarity=0.130  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc
Q 015150          275 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP  353 (412)
Q Consensus       275 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~  353 (412)
                      +.||..+.-++++++-.-  +.+.+..+|.+.+-+.- ....+|...+-+++.+|....  ...+..+|.+...|.|+.+
T Consensus       945 ~~vra~~vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHhcCchH
Confidence            346666666666666433  22455677777765543 335677777777666664332  2456789999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          354 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       354 ~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      -||+.++..|..+.+.=--.+.-..++-++..+ -|.+.++|..+-..++.+.+.
T Consensus      1021 iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l-~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFGIVKWNGELFIRFMLAL-LDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             HHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHH-cccCHHHHHHHHHHHHHHHhh
Confidence            999999999998875311111123445555554 488899999999888887654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.75  E-value=5.2e-08  Score=67.93  Aligned_cols=85  Identities=31%  Similarity=0.445  Sum_probs=51.3

Q ss_pred             HHHHhhc-cCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Q 015150           69 PVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP  147 (412)
Q Consensus        69 ~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  147 (412)
                      |.+.+.+ +|+++.+|..++.+|+.+..        .+.+|.+.++++|+++.||..|+.+|+.+..        +..++
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~   65 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP   65 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence            3444444 66777777777777764332        3566777777777777777777777766532        23556


Q ss_pred             hHHHhccC-CcHHHHHHHHHHHH
Q 015150          148 CVKELSSD-SSQHVRSALATVIM  169 (412)
Q Consensus       148 ~l~~~~~d-~~~~vr~~~~~~l~  169 (412)
                      .+.+++.+ +++.||..++.+++
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            66665543 44556666666553

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.74  E-value=2.2e-06  Score=68.26  Aligned_cols=110  Identities=21%  Similarity=0.205  Sum_probs=71.3

Q ss_pred             hHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHH
Q 015150           41 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE  120 (412)
Q Consensus        41 ~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  120 (412)
                      +.+|..++.+++.++...+.  ......|.+...++|+++.||+.++..|..+... +--.....++..+..++.|++++
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE   78 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence            56777777777777766543  3345666677777777777777777777776642 11122344556666777888888


Q ss_pred             HHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc
Q 015150          121 VRIAAAGKVTKICRILNPELAIQHILPCVKELS  153 (412)
Q Consensus       121 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~  153 (412)
                      ||..|...+..+.....++.+.+.+.+.+..+.
T Consensus        79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~  111 (178)
T PF12717_consen   79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLN  111 (178)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence            888888888777776555655555555555443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.73  E-value=7.9e-05  Score=71.09  Aligned_cols=352  Identities=14%  Similarity=0.149  Sum_probs=203.5

Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC--C
Q 015150           24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--P   99 (412)
Q Consensus        24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--~   99 (412)
                      ....+++.+.++++.++..+...+...+..+.-+...  ......+++.+.+++..++..++..+++.|.+++..-.  .
T Consensus       287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~  366 (708)
T PF05804_consen  287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS  366 (708)
T ss_pred             HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            4556778888888888888888888888877755322  23445688899999988889999999999998874322  2


Q ss_pred             CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCcccC
Q 015150          100 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG  176 (412)
Q Consensus       100 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~  176 (412)
                      .....-++|.+..++.|++  .|..++..|..++..-...  ......+|.+.+++ ..+++.+...++..+.+++..-.
T Consensus       367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r  444 (708)
T PF05804_consen  367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR  444 (708)
T ss_pred             HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence            2233457899999998754  5667777777765421111  22234678877754 44566666655555555553321


Q ss_pred             hh-HHH-HhhHHHHH-HhhcccChHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHHHhcC-CCchHHHHHHHHhhHHH
Q 015150          177 KD-ATI-EQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLA  250 (412)
Q Consensus       177 ~~-~~~-~~l~~~l~-~~l~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~  250 (412)
                      .. ... ..-++.+. ..++..++- -   ++.+-.+...-|+  ..+.+.+.+ +...+.. +++..   .+++++.++
T Consensus       445 naqlm~~g~gL~~L~~ra~~~~D~l-L---lKlIRNiS~h~~~~k~~f~~~i~~-L~~~v~~~~~ee~---~vE~LGiLa  516 (708)
T PF05804_consen  445 NAQLMCEGNGLQSLMKRALKTRDPL-L---LKLIRNISQHDGPLKELFVDFIGD-LAKIVSSGDSEEF---VVECLGILA  516 (708)
T ss_pred             HHHHHHhcCcHHHHHHHHHhcccHH-H---HHHHHHHHhcCchHHHHHHHHHHH-HHHHhhcCCcHHH---HHHHHHHHH
Confidence            11 111 12233333 334443332 1   2233333333221  122222223 3333333 34444   444555554


Q ss_pred             hhh----ChhhHH--HHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCc--hHHHH
Q 015150          251 SQL----GVGFFD--DKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH--YLYRM  318 (412)
Q Consensus       251 ~~~----~~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~--~~~r~  318 (412)
                      ...    +-..+.  ..++|.+.+.|...  .+++...++..+|.++..-...  .....+++.+.++++...  ...-.
T Consensus       517 NL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl  596 (708)
T PF05804_consen  517 NLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVL  596 (708)
T ss_pred             hcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence            432    111121  25788888888643  3467777888888776422111  113457777777776543  33444


Q ss_pred             HHHHHHHHhccccch-hH--HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh-------hchH---HHHhhHHHHHHh
Q 015150          319 TILQAISLLAPVMGS-EI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI-------VDQS---VVEKSIRPCLVE  385 (412)
Q Consensus       319 ~~~~~l~~l~~~~~~-~~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~-------~~~~---~~~~~i~~~l~~  385 (412)
                      ..+.++.++...-.. +.  ....+...++.++.|+++.||..+=.+|.-++..       +..+   .+..+.+..+..
T Consensus       597 Qil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~  676 (708)
T PF05804_consen  597 QILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVES  676 (708)
T ss_pred             HHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            455566666533211 11  1245777899999999999999988888776542       1122   345677777755

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.72  E-value=3e-06  Score=70.67  Aligned_cols=189  Identities=8%  Similarity=0.065  Sum_probs=130.3

Q ss_pred             hHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHHHH-H-HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHH
Q 015150          106 VVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELA-I-QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE  182 (412)
Q Consensus       106 l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~-~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  182 (412)
                      -+..+..+++ ..++.+++.+.-+++..+.+.....+ . -..++.+.+++.++++.+|..+++++..++.........+
T Consensus        13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik   92 (254)
T PF04826_consen   13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK   92 (254)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence            3455666665 45788999999999887665433322 2 2478999999999999999999999998886554433334


Q ss_pred             hhHHHHHHhhc-c-cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--hhhH
Q 015150          183 QLLPIFLSLLK-D-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFF  258 (412)
Q Consensus       183 ~l~~~l~~~l~-d-~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~  258 (412)
                      ..++.+.+... + -+.+++.++++.|..+.-.-.........+|.+..++...+..+|..+++.+..++..-.  .+.+
T Consensus        93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll  172 (254)
T PF04826_consen   93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELL  172 (254)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHH
Confidence            44455544322 2 367888888999888853322223334567888899999999999999999988876542  3334


Q ss_pred             HHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhCh
Q 015150          259 DDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGP  294 (412)
Q Consensus       259 ~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~  294 (412)
                      ..+..+-++.++... ..++...++..+..+.+.+..
T Consensus       173 ~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~  209 (254)
T PF04826_consen  173 SAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK  209 (254)
T ss_pred             hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence            445666677777664 566777777777777666544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.71  E-value=2e-06  Score=79.27  Aligned_cols=233  Identities=14%  Similarity=0.220  Sum_probs=173.4

Q ss_pred             ChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhc-cc
Q 015150          117 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DE  195 (412)
Q Consensus       117 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~  195 (412)
                      .++.-+..-.+.|..+...++...+.+.++|.+...+.+  ..+.-...-.+..|++.....++...++|.+...++ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            345667777888888888899998999999999887632  122222333444455555666667788888888877 34


Q ss_pred             ChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHH-hcCch
Q 015150          196 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LKDKV  274 (412)
Q Consensus       196 ~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~  274 (412)
                      ..+++.-.++.+..+.+.+..+.+.+.++|.+...+++.+.+++..++..++.+++.+......+.++|.+.++ +...+
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            56777788888999999999999999999999999999999999999999999999998878888899998775 56788


Q ss_pred             hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc--ccchhHHHHhhHHHHHhhcCCCC
Q 015150          275 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKDRV  352 (412)
Q Consensus       275 ~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~  352 (412)
                      ..|+..++.+++.+++.+..-...+.++|.+... +.+++.+....+.....+.-  ..|.+...+.++|.+..+...+.
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            8899999999999998876655566666555544 33445556666665555532  22235567788888877765544

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.68  E-value=2.6e-06  Score=71.05  Aligned_cols=213  Identities=13%  Similarity=0.107  Sum_probs=131.6

Q ss_pred             HHHHHhhc-ccChHHHHHHHHHHHHHHHhhch-hhHH-hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHH
Q 015150          186 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-DLLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  262 (412)
Q Consensus       186 ~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~-~~~~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  262 (412)
                      ..+..+++ .++|.++..+.-+++..+.+-.. +.+. -..++.+..++.++++.+|..++.++..++.........+..
T Consensus        15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~   94 (254)
T PF04826_consen   15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY   94 (254)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence            44445555 34677887777777776543221 2221 235777888888888888888887777766554333222333


Q ss_pred             HHHHHH-HhcC-chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc--hhHHHH
Q 015150          263 GALCMQ-WLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG--SEITCS  338 (412)
Q Consensus       263 ~~~l~~-~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~  338 (412)
                      ++.+.+ ...+ .+..++.++++.|..+.-...........+|.++.++...+..+|..++..+..++..-.  .+-...
T Consensus        95 i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~  174 (254)
T PF04826_consen   95 IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA  174 (254)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc
Confidence            333333 2332 356788888888777653222223334567777888888787888888888888875322  233455


Q ss_pred             hhHHHHHhhcCCC-CchHHHHHHHHHHHHhhhhchH-------HH-----------HhhHHHHHHhhcCCCCccHHHHH
Q 015150          339 QLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS-------VV-----------EKSIRPCLVELSEDPDVDVRFFA  398 (412)
Q Consensus       339 ~il~~l~~~l~d~-~~~vR~~~~~~l~~l~~~~~~~-------~~-----------~~~i~~~l~~l~~d~~~~vr~~a  398 (412)
                      +.++.++.+++.+ ..++-..++..+..+...+..+       .+           .+.+...|..+..+||++||..+
T Consensus       175 q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  175 QVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV  253 (254)
T ss_pred             cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence            5666777777654 4666777777777776554332       00           13466677778899999999764

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.65  E-value=4e-06  Score=66.72  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=85.2

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCCh
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW   80 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~   80 (412)
                      .|.||..++.++|+++..++  ...+..+|.+...+.|+++.+|+.|+.++..+...- --..+..++..+..++.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-~ik~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-MIKVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-ceeehhhhhHHHHHHHcCCCH
Confidence            37899999999999998775  456667888889999999999999999999887541 223455676777788899999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHH
Q 015150           81 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVR  112 (412)
Q Consensus        81 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  112 (412)
                      .||..|...+..+.....++.+.+.+.+.+..
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~  109 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNIIYNNFPELISS  109 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            99999999999999876555544434444333

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=6e-06  Score=77.34  Aligned_cols=177  Identities=19%  Similarity=0.190  Sum_probs=121.8

Q ss_pred             HhccCCcHHHHHHHHHHHHhcCccc--ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHH
Q 015150          151 ELSSDSSQHVRSALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  228 (412)
Q Consensus       151 ~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~  228 (412)
                      ..+.|+...+|..+...+..+++.=  ..-...+.++..+.+.++|+++.|-.++++.+..++...+     +.++|.+.
T Consensus       734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~  808 (982)
T KOG4653|consen  734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLS  808 (982)
T ss_pred             HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHH
Confidence            3456777788888888887777522  2222335778888999999999999999998888887754     33455554


Q ss_pred             HH----hcCCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhhh
Q 015150          229 EL----AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQ  299 (412)
Q Consensus       229 ~~----~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~  299 (412)
                      +.    -+...+..|.-+.+++..++...|.-.  +.+.+...++...+|++..-|..++.++|.++....   .+++.+
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e  888 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE  888 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence            42    222223445555578888888777633  446688888888899988889999999999887653   343333


Q ss_pred             hhHHHHH-hhhcCCchHHHHHHHHHHHHhccccch
Q 015150          300 HIVPQVL-EMINNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       300 ~~l~~l~-~~~~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                       ++-.+. -...|.+..+|.+|++.+..+....|.
T Consensus       889 -v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~  922 (982)
T KOG4653|consen  889 -VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE  922 (982)
T ss_pred             -HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence             333333 333467788888888888888776664

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.63  E-value=1.4e-05  Score=70.13  Aligned_cols=251  Identities=11%  Similarity=0.083  Sum_probs=132.7

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc--h-------------
Q 015150            1 MPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--Q-------------   61 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~-------------   61 (412)
                      ||.+--+..+++..+....+-+.    +..++..-+..++.+.++.+|.+++-.++.+.....+  +             
T Consensus       120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n  199 (728)
T KOG4535|consen  120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSN  199 (728)
T ss_pred             CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCcccc
Confidence            34555667777777776433211    2333445556668999999999999888877653210  0             


Q ss_pred             ---------hhhhh-----------------------hHHH-----------------HHhhccC--CChHHHHHHHHHH
Q 015150           62 ---------DCVAH-----------------------ILPV-----------------IVNFSQD--KSWRVRYMVANQL   90 (412)
Q Consensus        62 ---------~~~~~-----------------------l~~~-----------------l~~l~~d--~~~~vR~~~~~~l   90 (412)
                               +.+++                       ++..                 .......  ....+|..+.+.|
T Consensus       200 ~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl  279 (728)
T KOG4535|consen  200 SATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVL  279 (728)
T ss_pred             ccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHH
Confidence                     00000                       0000                 0001100  1134788888888


Q ss_pred             HHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HHHHh-----hhhhH-----HHhccC
Q 015150           91 YELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQH-----ILPCV-----KELSSD  155 (412)
Q Consensus        91 ~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~-----~~~~l-----~~~~~d  155 (412)
                      ..++.+++- ..+..++...+...+.+..+.++..+..++..++.....+    .+...     +...+     .....|
T Consensus       280 ~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD  359 (728)
T KOG4535|consen  280 TLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD  359 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh
Confidence            888887763 2234566777777888999999999999998887765422    11111     11111     111222


Q ss_pred             -CcHHHHHHHHHHHHhcCccc--ChhHHHHhhHHHHHHhhcccCh-HHHHHHHHHHHHHHHhhch--h-hHHhhHHHHHH
Q 015150          156 -SSQHVRSALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIV  228 (412)
Q Consensus       156 -~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~i~~~~~~--~-~~~~~~~~~l~  228 (412)
                       ..+....+.|..+..+...-  |-+...+...+.|..-+.|... -++.+|++++....-.-+-  + .+.......+.
T Consensus       360 s~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il  439 (728)
T KOG4535|consen  360 SEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAIL  439 (728)
T ss_pred             hcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHH
Confidence             22344556666666665331  1122224566777777776543 4566666665543222110  0 11122333344


Q ss_pred             HHhcCCCchHHHHHHHHhhHHHh
Q 015150          229 ELAEDRHWRVRLAIIEYIPLLAS  251 (412)
Q Consensus       229 ~~~~d~~~~vr~~~~~~l~~l~~  251 (412)
                      ..+.|+.-.+|..+...++.+..
T Consensus       440 ~sl~d~~ln~r~KaawtlgnITd  462 (728)
T KOG4535|consen  440 MSLEDKSLNVRAKAAWSLGNITD  462 (728)
T ss_pred             HHhhhHhHhHHHHHHHHhhhhHH
Confidence            44455555555555555554443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.62  E-value=3.2e-07  Score=68.23  Aligned_cols=107  Identities=19%  Similarity=0.172  Sum_probs=77.5

Q ss_pred             hhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---
Q 015150          300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---  373 (412)
Q Consensus       300 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---  373 (412)
                      .+++.+.+.+.++++.+|..++.+++.++.....   ......++|.+.+++.|+++.+|..++.+++.++...+..   
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            4667777777777788888888888888754221   2233478888888888888888888888888887654321   


Q ss_pred             HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          374 VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       374 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      .....+++.+.+++++.+.++|..+..++..++
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            233457888888888888888888888887765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.61  E-value=1.5e-05  Score=73.20  Aligned_cols=170  Identities=19%  Similarity=0.189  Sum_probs=104.0

Q ss_pred             hhhHHHHHHHHHH-hccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150           22 AHLKSEIMSIFEE-LTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA   96 (412)
Q Consensus        22 ~~~~~~l~~~l~~-l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~   96 (412)
                      +.+...++..+.. +.--+.+..-...++.+..+...++.    ++....++..++.....++-.||..+++.|..+...
T Consensus        36 ~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~  115 (892)
T KOG2025|consen   36 HEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDE  115 (892)
T ss_pred             hhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcc
Confidence            3455556665553 22222222333344555555555443    455666777777888889999999999999888762


Q ss_pred             hC--CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCc
Q 015150           97 VG--PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAP  173 (412)
Q Consensus        97 ~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~  173 (412)
                      ..  ++...+.+...+...+.|..+.||..|+.+|..+-.--.++..  .+...+..++ +|++++||+++..++..=. 
T Consensus       116 ~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~--~v~n~l~~liqnDpS~EVRRaaLsnI~vdn-  192 (892)
T KOG2025|consen  116 NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC--PVVNLLKDLIQNDPSDEVRRAALSNISVDN-  192 (892)
T ss_pred             ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhhccCc-
Confidence            22  2223345666667778899999999999999887532222211  1334444444 6899999999887664322 


Q ss_pred             ccChhHHHHhhHHHHHHhhcccChHHHHHH
Q 015150          174 ILGKDATIEQLLPIFLSLLKDEFPDVRLNI  203 (412)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~  203 (412)
                               .-.|.+..-..|-+..+|.-+
T Consensus       193 ---------sTlp~IveRarDV~~anRrlv  213 (892)
T KOG2025|consen  193 ---------STLPCIVERARDVSGANRRLV  213 (892)
T ss_pred             ---------ccchhHHHHhhhhhHHHHHHH
Confidence                     334555555555555555543

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=0.00074  Score=64.95  Aligned_cols=346  Identities=13%  Similarity=0.114  Sum_probs=198.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccC---c----------hhhhhhhHHH
Q 015150            4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE---P----------QDCVAHILPV   70 (412)
Q Consensus         4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~---~----------~~~~~~l~~~   70 (412)
                      +|-....++..+.+.-.+ .-|+.+++.+..++++.+...-..|+-++..+++.-.   +          +...+.++..
T Consensus       105 iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~  183 (1010)
T KOG1991|consen  105 IRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQI  183 (1010)
T ss_pred             HHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence            466666666666654333 4588899999999999988777888888887776421   1          1122334444


Q ss_pred             HHhhccCCChH---HHHHHHHHHHHHHHH-hCCCCcc----cchHHHHHHhcC----------C-------ChHHHHHHH
Q 015150           71 IVNFSQDKSWR---VRYMVANQLYELCEA-VGPEPTR----SDVVPAYVRLLR----------D-------NEAEVRIAA  125 (412)
Q Consensus        71 l~~l~~d~~~~---vR~~~~~~l~~l~~~-~~~~~~~----~~l~~~l~~~l~----------d-------~~~~vr~~a  125 (412)
                      +..++.+++..   ..+..++.+-.++.. ++.....    ...+..+...++          |       +-|.+++-|
T Consensus       184 ~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa  263 (1010)
T KOG1991|consen  184 FNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWA  263 (1010)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHH
Confidence            45566665543   344444444444432 2222211    122233333332          2       225688999


Q ss_pred             HHHHHHHHHhhCHH--------H--------HHHhhhhhHHHhcc---C---CcHHHHHHHHHHHHhcCcccChhHHHHh
Q 015150          126 AGKVTKICRILNPE--------L--------AIQHILPCVKELSS---D---SSQHVRSALATVIMGMAPILGKDATIEQ  183 (412)
Q Consensus       126 ~~~l~~l~~~~~~~--------~--------~~~~~~~~l~~~~~---d---~~~~vr~~~~~~l~~l~~~~~~~~~~~~  183 (412)
                      +..+.++.+..+..        .        +...++..+.+.+.   .   -+++|-..+...+.+....   ...-+.
T Consensus       264 ~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~---~~twkl  340 (1010)
T KOG1991|consen  264 LHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSH---ASTWKL  340 (1010)
T ss_pred             HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccH---HHHHHH
Confidence            99999988766432        1        12223333333321   1   2334444444444433321   111122


Q ss_pred             hHHHHHHhh-------------------cccChHHHH-------------HHHHHHHHHHHhhchhhHHhhHHHHHHHHh
Q 015150          184 LLPIFLSLL-------------------KDEFPDVRL-------------NIISKLDQVNQVIGIDLLSQSLLPAIVELA  231 (412)
Q Consensus       184 l~~~l~~~l-------------------~d~~~~vr~-------------~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~  231 (412)
                      +-|++.-++                   .|+...+|.             ++...+..++..=|++.+ +.+++.+.+.+
T Consensus       341 l~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il  419 (1010)
T KOG1991|consen  341 LKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETL-PKILSFIVDIL  419 (1010)
T ss_pred             hhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhh-hhHHHHHHHHH
Confidence            333332222                   123344554             445555555555445554 66677666655


Q ss_pred             c--------CCCchHHHHHHHHhhHHHhhhChh-----hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HHhChhhh
Q 015150          232 E--------DRHWRVRLAIIEYIPLLASQLGVG-----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA-EEFGPDWA  297 (412)
Q Consensus       232 ~--------d~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~  297 (412)
                      .        ..+++-+.+++..++.++..+.+.     .....+.++++..++++.--.|..|+..++.+. ..+..+..
T Consensus       420 ~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~  499 (1010)
T KOG1991|consen  420 TRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNN  499 (1010)
T ss_pred             HhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHH
Confidence            4        346788889999999998776432     233446677777789999999999999999988 44554444


Q ss_pred             hhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccch--hHH---HHhhHHHHHhhcCCCCch
Q 015150          298 MQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGS--EIT---CSQLLPVVINASKDRVPN  354 (412)
Q Consensus       298 ~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~--~~~---~~~il~~l~~~l~d~~~~  354 (412)
                      ...++....+.+. |+.-.||..++.++..+......  +.+   .+.++..++++.++-+-.
T Consensus       500 l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End  562 (1010)
T KOG1991|consen  500 LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND  562 (1010)
T ss_pred             HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence            4556666666666 77788999999999998765542  223   334445556655554433

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=7.8e-05  Score=68.74  Aligned_cols=203  Identities=16%  Similarity=0.120  Sum_probs=97.5

Q ss_pred             HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH
Q 015150          182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  259 (412)
Q Consensus       182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  259 (412)
                      +.++-++.+.....+..||..+.+-+..+....+  ++...+.+...+...+.|..+.||..++.++..+-..-+.+.. 
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~-  162 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC-  162 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-
Confidence            3344444444445556666666666665554322  2333355555555566666666666666665554432222111 


Q ss_pred             HHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHH-HHHHHhccccchhHHH
Q 015150          260 DKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTIL-QAISLLAPVMGSEITC  337 (412)
Q Consensus       260 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~-~~l~~l~~~~~~~~~~  337 (412)
                       .+...+..++ +|++++||.+|+.++..          ...-+|.+++...|-+..+|..+. .++..+ .....+  -
T Consensus       163 -~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~ls--i  228 (892)
T KOG2025|consen  163 -PVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSLS--I  228 (892)
T ss_pred             -cHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhh--H
Confidence             1233333322 46666677766655432          233456666666665544444333 333333 111111  1


Q ss_pred             HhhHHHHHhhcCCCCchHHHHHHHHHHH-HhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 015150          338 SQLLPVVINASKDRVPNIKFNVAKVLQS-LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  404 (412)
Q Consensus       338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~-l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  404 (412)
                      ++-...+-.+++|....||.++.+++.. |.....     ..+++.|.++--...++|+..+.+|+-.
T Consensus       229 ~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d-----gni~ElL~~ldvsnss~vavk~lealf~  291 (892)
T KOG2025|consen  229 DKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD-----GNILELLERLDVSNSSEVAVKALEALFS  291 (892)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc-----ccHHHHHHHhccccchHHHHHHHHHHHH
Confidence            1223344445666666666666665543 222111     2344555554333444566666666555

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=6.6e-05  Score=62.88  Aligned_cols=283  Identities=14%  Similarity=0.122  Sum_probs=166.9

Q ss_pred             HHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCc-------ccchHHHHHHhcCCCh
Q 015150           46 LAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-------RSDVVPAYVRLLRDNE  118 (412)
Q Consensus        46 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~  118 (412)
                      .+..++..+.+.--+....+.+.|.+...+..++..|+..+++.++.+.+.++....       -..+++.+..++..++
T Consensus        62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged  141 (524)
T KOG4413|consen   62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED  141 (524)
T ss_pred             hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence            367777777776656667788899999999999999999999999999987764331       3568999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhH--HHhccCCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHh
Q 015150          119 AEVRIAAAGKVTKICRILNPE--LAIQHILPCV--KELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSL  191 (412)
Q Consensus       119 ~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l--~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~  191 (412)
                      .+|-++|++.+..++.+...-  .|...+...+  .++..-.+.-+|..+.+.+..+.+.-+   .++....++..+..-
T Consensus       142 deVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE  221 (524)
T KOG4413|consen  142 DEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE  221 (524)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence            999999999999887642211  1111122211  122223355667777777666654332   233345677777666


Q ss_pred             hcc-cChHHHHHHHHHHHHHHHhhchhhH--HhhHHHHHHHHh--cCCCchHHHHHHHHhhHHHhhhChhhHH-------
Q 015150          192 LKD-EFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGFFD-------  259 (412)
Q Consensus       192 l~d-~~~~vr~~~~~~l~~i~~~~~~~~~--~~~~~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~~~-------  259 (412)
                      ++- ++.-|+.+++.....++..-....+  ...++..+....  .|.+|--+.-+   +....+.+|++...       
T Consensus       222 lkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfra---lmgfgkffgkeaimdvseeai  298 (524)
T KOG4413|consen  222 LKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRA---LMGFGKFFGKEAIMDVSEEAI  298 (524)
T ss_pred             hcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH---HHHHHHHhcchHHhhcCHHHH
Confidence            654 5677888888777777543221111  123344444332  23333322212   22233333332221       


Q ss_pred             -HH---HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh-hhhhhhhHHHH---HhhhcCCc-hHHHHHHHHHHHHhccc
Q 015150          260 -DK---LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-DWAMQHIVPQV---LEMINNPH-YLYRMTILQAISLLAPV  330 (412)
Q Consensus       260 -~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l---~~~~~~~~-~~~r~~~~~~l~~l~~~  330 (412)
                       +.   .+.-.+.+....++....+|+.++|.+..+... +.+.+.--|..   +....|.+ ..-.+++++++..++..
T Consensus       299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage  378 (524)
T KOG4413|consen  299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE  378 (524)
T ss_pred             HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence             11   122223445566788889999999988765532 22222222222   22222333 33456788888888754


Q ss_pred             c
Q 015150          331 M  331 (412)
Q Consensus       331 ~  331 (412)
                      +
T Consensus       379 l  379 (524)
T KOG4413|consen  379 L  379 (524)
T ss_pred             c
Confidence            3

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.58  E-value=0.00014  Score=66.91  Aligned_cols=260  Identities=17%  Similarity=0.160  Sum_probs=120.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR   81 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~   81 (412)
                      +.+++-+++.|..+.+.++.  ..+..+..+..++.|++..+|..|++.|..+++..  .+....+..++.++++..++.
T Consensus        36 ~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~tdd~~  111 (556)
T PF05918_consen   36 PKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQTDDPV  111 (556)
T ss_dssp             HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HH
T ss_pred             HHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhcccHH
Confidence            34555666666666665542  33445555555577777777777777776666552  224556666666776665655


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc--CCChHHHHHHHHHHHHHHHHhhC------HHHHHHhhhhhHHHhc
Q 015150           82 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL--RDNEAEVRIAAAGKVTKICRILN------PELAIQHILPCVKELS  153 (412)
Q Consensus        82 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~~~  153 (412)
                      .+..+=++|..+...-.    ...+-..+....  ...+..+|..++..|..-...++      .++....++..+.+.+
T Consensus       112 E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL  187 (556)
T PF05918_consen  112 ELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL  187 (556)
T ss_dssp             HHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence            55555555555443211    111222222332  13445677777766643222211      1344555667777777


Q ss_pred             cCCcHHHHHHHHHHHHhcCccc--ChhHHHHhhHHHHHHhhc-c-----cChHHHHHHHHHHHHHHHhhch----hhHHh
Q 015150          154 SDSSQHVRSALATVIMGMAPIL--GKDATIEQLLPIFLSLLK-D-----EFPDVRLNIISKLDQVNQVIGI----DLLSQ  221 (412)
Q Consensus       154 ~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-d-----~~~~vr~~~~~~l~~i~~~~~~----~~~~~  221 (412)
                      .|-...-=..++..|..+-..-  ......+.|++.+..... |     .+++.-...+.++..-...+..    ..+..
T Consensus       188 ~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~  267 (556)
T PF05918_consen  188 QDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVN  267 (556)
T ss_dssp             TT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHH
T ss_pred             HhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHH
Confidence            7744322233344444433211  112233567777665432 1     2344444455554444433332    22222


Q ss_pred             hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHh
Q 015150          222 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  270 (412)
Q Consensus       222 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  270 (412)
                      .+...+...+.+-....|..+++.+..++...|... ...++|.+...|
T Consensus       268 y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L  315 (556)
T PF05918_consen  268 YMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL  315 (556)
T ss_dssp             HHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred             HHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence            222222222333345677888999999999888655 444556666655

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.56  E-value=8.8e-07  Score=65.82  Aligned_cols=107  Identities=14%  Similarity=0.065  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh---ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---
Q 015150          261 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEF---GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---  334 (412)
Q Consensus       261 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---  334 (412)
                      .+++.+.+++.+.++.+|..++.+++.+....   ........++|.+.+.+.++++.++..++.+++.++...+..   
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            36777788888888889999999988887642   122233478888888889888999999999999998755332   


Q ss_pred             HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          335 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       335 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      .....+++.+.+.+.+.+..+|..++.++..++
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            233458889999999888999999999888765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.55  E-value=9.4e-06  Score=71.03  Aligned_cols=191  Identities=14%  Similarity=0.167  Sum_probs=132.0

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCHHHH-
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELA-  141 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~-  141 (412)
                      +...+.+...+....-|+.+...|..+...-+.   +.+..+++..+.+.+.| .+...|+.|+..|..+++..+...+ 
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            444555555565666778877766665542211   11235678888888888 8899999999999999987655422 


Q ss_pred             -HHhhhhhHHHhccCCcHHHHHHHHHHHH-hcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH
Q 015150          142 -IQHILPCVKELSSDSSQHVRSALATVIM-GMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  219 (412)
Q Consensus       142 -~~~~~~~l~~~~~d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~  219 (412)
                       .+..+.-+++...|....|-..+.+.+. .++.+.+-.+ ...+.|.+..    .+...-..+++.+..+.+.+..+.+
T Consensus       368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL  442 (516)
T KOG2956|consen  368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL  442 (516)
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence             2234555566677877766666666544 4444444433 2234444443    4455666788899999998887765


Q ss_pred             ---HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHH
Q 015150          220 ---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  262 (412)
Q Consensus       220 ---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  262 (412)
                         .+.+.|.+.+...+.+..||..++-++..+...+|.+.+.+++
T Consensus       443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL  488 (516)
T KOG2956|consen  443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL  488 (516)
T ss_pred             HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence               4677899999999999999999999999999999976555543

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=0.00086  Score=63.23  Aligned_cols=360  Identities=17%  Similarity=0.197  Sum_probs=193.1

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhh-ccCch---------hhhhhhHHHH
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK-LLEPQ---------DCVAHILPVI   71 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~-~~~~~---------~~~~~l~~~l   71 (412)
                      |.+|+.+-++|.....   ++.+.-.+++++.+-..  ++.+|.+|+-.+.+..+ .+.++         ..+..+...+
T Consensus        19 ps~rk~aEr~L~~~e~---q~~y~l~lL~Lv~~~~~--d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslI   93 (960)
T KOG1992|consen   19 PSVRKPAERALRSLEG---QQNYPLLLLNLVANGQQ--DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLI   93 (960)
T ss_pred             CccCchHHHHHHHhcc---CCCchHHHHHHHhccCc--ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHH
Confidence            6777777777765443   23344445555433322  45678888877777776 34331         1233455566


Q ss_pred             HhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC--------------
Q 015150           72 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--------------  137 (412)
Q Consensus        72 ~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------------  137 (412)
                      ..+.-+....+.....++++.+++.--+ ..|+.++|.+...++..|..+-.+....-..+.+...              
T Consensus        94 v~lMl~s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~  172 (960)
T KOG1992|consen   94 VTLMLSSPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKL  172 (960)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence            6666666677777777777777753222 2356677777766664443222222222111111110              


Q ss_pred             ----------------------------------------------------HH---HHHHhhhhhHHHhcc--------
Q 015150          138 ----------------------------------------------------PE---LAIQHILPCVKELSS--------  154 (412)
Q Consensus       138 ----------------------------------------------------~~---~~~~~~~~~l~~~~~--------  154 (412)
                                                                          ++   ...+..++.+.++++        
T Consensus       173 vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~  252 (960)
T KOG1992|consen  173 VLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLES  252 (960)
T ss_pred             HHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCccccc
Confidence                                                                01   112334444444433        


Q ss_pred             C-C----cHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChH-----HHHHHHHHHHHHHHhhch------
Q 015150          155 D-S----SQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPD-----VRLNIISKLDQVNQVIGI------  216 (412)
Q Consensus       155 d-~----~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~-----vr~~~~~~l~~i~~~~~~------  216 (412)
                      | .    -..+|..+|+.+.-.+.....+.  +..+++.....++.+..++     ....|++.|..+.+.-.-      
T Consensus       253 ~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~  332 (960)
T KOG1992|consen  253 DEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEG  332 (960)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcc
Confidence            1 1    12456666666655443332221  2234444455666554433     344455556555433110      


Q ss_pred             hh-----------------------HHhhHHHHHHHHhcCCCch-HHHHHHHHhhHHHhhhChhh---HHHHHHHHHHHH
Q 015150          217 DL-----------------------LSQSLLPAIVELAEDRHWR-VRLAIIEYIPLLASQLGVGF---FDDKLGALCMQW  269 (412)
Q Consensus       217 ~~-----------------------~~~~~~~~l~~~~~d~~~~-vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~  269 (412)
                      +.                       +.+.-+..+.+-++-.|.. -|++++..+..+++.+....   +..++-..+-++
T Consensus       333 ~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y  412 (960)
T KOG1992|consen  333 ENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQY  412 (960)
T ss_pred             hHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            11                       1111222233333333333 36778888888888774322   222222333333


Q ss_pred             hcC--chhHHHHHHHHHHHHHHHHh-----C----------hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc
Q 015150          270 LKD--KVYSIRDAAANNVKRLAEEF-----G----------PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG  332 (412)
Q Consensus       270 l~d--~~~~vr~~a~~~l~~l~~~~-----~----------~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~  332 (412)
                      ..+  .+|.-...|+..+..+...-     |          .+++...++|.|..--....+.+|..++..+-.+-..++
T Consensus       413 ~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~  492 (960)
T KOG1992|consen  413 SKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG  492 (960)
T ss_pred             ccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC
Confidence            333  34555555555544444321     1          245566777777764445667888888888877777777


Q ss_pred             hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150          333 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       333 ~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  368 (412)
                      ++ ..-.++|.+...|..+..-|-.-|+.++.++..
T Consensus       493 ~~-~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~  527 (960)
T KOG1992|consen  493 KE-HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT  527 (960)
T ss_pred             hH-HHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence            76 455788999999999888899999999988854

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.53  E-value=2.8e-05  Score=68.33  Aligned_cols=406  Identities=12%  Similarity=0.098  Sum_probs=232.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhh---hhHHHHHHH---------HHHhccCCchHHHHHHHHhHHHHhhc----------cC
Q 015150            2 PMVRRSAATNLGKFAATVEAA---HLKSEIMSI---------FEELTQDDQDSVRLLAVEGCGALGKL----------LE   59 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~---------l~~l~~~~~~~~r~~a~~~l~~i~~~----------~~   59 (412)
                      ..||+.+.-++....+.++..   .+|..++|-         +.--++|+++..|..|++.+..+...          .+
T Consensus        10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~   89 (728)
T KOG4535|consen   10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS   89 (728)
T ss_pred             HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence            468999999999998887754   356666653         22246899999999999888877653          12


Q ss_pred             chhhhhh----------hHHH-HHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHH
Q 015150           60 PQDCVAH----------ILPV-IVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIA  124 (412)
Q Consensus        60 ~~~~~~~----------l~~~-l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~  124 (412)
                      +..+.+.          +... +..+..+.++.+-..++++|+.+....+-+.    +..+++..+..++.+.++.||..
T Consensus        90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs  169 (728)
T KOG4535|consen   90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS  169 (728)
T ss_pred             CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence            2111111          1222 2234456667777888899988876544332    22356777788899999999999


Q ss_pred             HHHHHHHHHHhh--CHH----------------------HHHHh------------------------------hhhhHH
Q 015150          125 AAGKVTKICRIL--NPE----------------------LAIQH------------------------------ILPCVK  150 (412)
Q Consensus       125 a~~~l~~l~~~~--~~~----------------------~~~~~------------------------------~~~~l~  150 (412)
                      ++..++.+...-  .++                      ++.+.                              +.|.+.
T Consensus       170 ~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~  249 (728)
T KOG4535|consen  170 SLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPK  249 (728)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCC
Confidence            999998875431  111                      00000                              001100


Q ss_pred             ----------HhccC--CcHHHHHHHHHHHHhcCcccChhH-HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--
Q 015150          151 ----------ELSSD--SSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--  215 (412)
Q Consensus       151 ----------~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--  215 (412)
                                ..+..  ....+|-.+.+.+..++.++|--. ...++.-.+...+.+..+.+...+...+..++..++  
T Consensus       250 ~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~  329 (728)
T KOG4535|consen  250 EDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQ  329 (728)
T ss_pred             ccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhh
Confidence                      00100  112345555555555555554321 122344444555668889999999999888876655  


Q ss_pred             --hhhHHhhH-HHHH----------HHHhcCCCchHHHHHHHHhhHHHhhh--ChhhHHHHHHHHHHHHhcCch-hHHHH
Q 015150          216 --IDLLSQSL-LPAI----------VELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKV-YSIRD  279 (412)
Q Consensus       216 --~~~~~~~~-~~~l----------~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~-~~vr~  279 (412)
                        ++...... ...+          ........+..+.+.+..+..+....  +-..-.....+.+.....|.. .-|+.
T Consensus       330 ~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~  409 (728)
T KOG4535|consen  330 YKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKA  409 (728)
T ss_pred             cCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHH
Confidence              22111111 1101          11122234455666666665554322  111112345666666666543 44888


Q ss_pred             HHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc----h-hHHHHhhHHH----HHhh
Q 015150          280 AAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG----S-EITCSQLLPV----VINA  347 (412)
Q Consensus       280 ~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----~-~~~~~~il~~----l~~~  347 (412)
                      +|.++++.++-.-+-.   .+.......+...+.|.....|+.+...++.+...+-    . +.+.+.+...    ++..
T Consensus       410 aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~  489 (728)
T KOG4535|consen  410 AASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRS  489 (728)
T ss_pred             HHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence            8888877655333321   1233445566677788888899999999998865432    1 2233333222    2221


Q ss_pred             ---cCCCCchHHHHHHHHHHHHhhhhchH-------HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          348 ---SKDRVPNIKFNVAKVLQSLIPIVDQS-------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       348 ---l~d~~~~vR~~~~~~l~~l~~~~~~~-------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                         ..-....||..+.++|+.+.+.+.+-       .....+...+..-.......||.+++.+++.+.+
T Consensus       490 A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk  559 (728)
T KOG4535|consen  490 AIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK  559 (728)
T ss_pred             HHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence               12235689999999999998876531       1112233333333445566899999999998865

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=0.0014  Score=64.24  Aligned_cols=144  Identities=14%  Similarity=0.181  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHhc----CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccc
Q 015150          258 FDDKLGALCMQWLK----DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMG  332 (412)
Q Consensus       258 ~~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~  332 (412)
                      +...+.|++....+    -.+++++.+|.-+++++.- ++.+ +...-+|.+...+. .+++.+|..++-+++.++-.++
T Consensus       916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~-fces~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHH-HHHHHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            34456777777763    3468899999999999875 3344 35567788888776 7889999999999999986665


Q ss_pred             hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          333 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       333 ~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      .  ..+..-+.+...+.|+++.||.+|.-+++.+..  .+-.-....++.+..++.||+..+|..|...+..+..
T Consensus       994 n--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL--ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  994 N--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL--NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             c--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH--hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            4  345566778889999999999999999998864  2223345678888889999999999999977766543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=98.44  E-value=0.00096  Score=63.71  Aligned_cols=147  Identities=15%  Similarity=0.143  Sum_probs=100.5

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--h
Q 015150          221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--D  295 (412)
Q Consensus       221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~  295 (412)
                      ..+.|.+.+......-..|......++.+....+.+..   .+.+.|++++.|+=++..||..+..++..+....+.  .
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t  945 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT  945 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence            45566666666655556677777777777666655443   355778888888777778888887777777665442  2


Q ss_pred             hhhhhhHHHHHhhhcCCc---hHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          296 WAMQHIVPQVLEMINNPH---YLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       296 ~~~~~~l~~l~~~~~~~~---~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      ...+.++|.++.+-.|++   -.+|+.|+++++.+.+..+..   .|.+.++..+.+.|.|+..-||..|.++=+.+.
T Consensus       946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            234567777777766655   457888888888877755544   467777777788888887778887777666554

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.42  E-value=3.2e-05  Score=62.73  Aligned_cols=89  Identities=16%  Similarity=0.160  Sum_probs=71.2

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC--chHHHHHHHHHHHHhccccchhHHHHh
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQ  339 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~~  339 (412)
                      -+..+...+.+++.-.|..++-.+|++-.        +.-+|.+.+.+.|.  ++.+|-.++++||.++        .+.
T Consensus       188 aI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--------~e~  251 (289)
T KOG0567|consen  188 AINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIA--------DED  251 (289)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc--------CHH
Confidence            44456777888888899999988887664        34567777766664  4789999999999987        357


Q ss_pred             hHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          340 LLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       340 il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                      .++.+.++++|+.+-||..+.-++.-.
T Consensus       252 ~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  252 CVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            888999999999999999998888644

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.42  E-value=0.0015  Score=60.06  Aligned_cols=382  Identities=14%  Similarity=0.071  Sum_probs=198.7

Q ss_pred             hHHHHHHHHHHhccCCc-hHHHHHHHHhHHHHhhccCchh-----hhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHh
Q 015150           24 LKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEPQD-----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV   97 (412)
Q Consensus        24 ~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~i~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~   97 (412)
                      .....++-+..++++.+ ..++...++++..+....+..+     ....+++.+..+...+...+-..-+......+..-
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~  171 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK  171 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence            44556677777787777 7789999999999988753321     22335555444443211111111111111111100


Q ss_pred             CCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHH---HHHhhCHH-------HHHHhhhh--hHHHhccCCcHHHHHH
Q 015150           98 GPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTK---ICRILNPE-------LAIQHILP--CVKELSSDSSQHVRSA  163 (412)
Q Consensus        98 ~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~---l~~~~~~~-------~~~~~~~~--~l~~~~~d~~~~vr~~  163 (412)
                      ....  .-..+...+.-++.--+..+|.+|..++..   +...-+..       .....+.+  .+.++.+|++..-|..
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence            0000  011122222222222346789999999883   32221111       11122333  4556778888878887


Q ss_pred             HHHHHHhcCccc-ChhH----------HHHhhHHHHHHhhcccChHHHHHHHH-----HHHHHHHhhchhhHHhhHHHHH
Q 015150          164 LATVIMGMAPIL-GKDA----------TIEQLLPIFLSLLKDEFPDVRLNIIS-----KLDQVNQVIGIDLLSQSLLPAI  227 (412)
Q Consensus       164 ~~~~l~~l~~~~-~~~~----------~~~~l~~~l~~~l~d~~~~vr~~~~~-----~l~~i~~~~~~~~~~~~~~~~l  227 (412)
                      .+.++..+...- ..+.          -.+.++.+..-.+.. +|-++.-...     -+.++.+.+.........++..
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~-~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~  330 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMN-DPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT  330 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeec-CCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence            877776654221 0000          011222222222111 1222211111     1122222222111112222222


Q ss_pred             HHH------hcCCCchHHHHHHHHh---hHHHhhhCh----hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh--
Q 015150          228 VEL------AEDRHWRVRLAIIEYI---PLLASQLGV----GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF--  292 (412)
Q Consensus       228 ~~~------~~d~~~~vr~~~~~~l---~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--  292 (412)
                      .++      +....++.|.-++.-.   .......+.    +.........+.....-.+..++.+|+.++..+...+  
T Consensus       331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a  410 (678)
T KOG1293|consen  331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA  410 (678)
T ss_pred             HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            222      2334455555443321   112222221    1112223333333334456778888988877766543  


Q ss_pred             -ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150          293 -GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       293 -~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  368 (412)
                       ....-...+...+.+++.||+-.+..+++.++..+.-.+|.   .+.....+..+.+++.++.+++|..+.++|.++.-
T Consensus       411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f  490 (678)
T KOG1293|consen  411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF  490 (678)
T ss_pred             HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence             22222456777788888999999999999999998766664   25566788899999999999999999999998864


Q ss_pred             hhchHH---HHhh-HHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          369 IVDQSV---VEKS-IRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       369 ~~~~~~---~~~~-i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      .-..+.   +... -...+.-+.+|||+.|+..+...+..+.
T Consensus       491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~  532 (678)
T KOG1293|consen  491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT  532 (678)
T ss_pred             cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence            333221   1122 2334455789999999998887776553

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.0011  Score=62.30  Aligned_cols=288  Identities=12%  Similarity=0.146  Sum_probs=169.7

Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHH
Q 015150           64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ  143 (412)
Q Consensus        64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  143 (412)
                      ...+++++-.++.++...|-..+++++..+....+.+..  ..+..+.-+++.+....|.+|...|.+++...+....  
T Consensus       243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--  318 (865)
T KOG1078|consen  243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--  318 (865)
T ss_pred             hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--
Confidence            456888888889988888988888888776654443332  2566777789999999999999999998876554321  


Q ss_pred             hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150          144 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  223 (412)
Q Consensus       144 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~  223 (412)
                      ..-.-+..+++|.+..+-.-+...+-.-+    .+...+.++..+..+..|-+.+-..-+..++..++..++...  ..+
T Consensus       319 ~cN~elE~lItd~NrsIat~AITtLLKTG----~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~  392 (865)
T KOG1078|consen  319 VCNLDLESLITDSNRSIATLAITTLLKTG----TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVM  392 (865)
T ss_pred             ccchhHHhhhcccccchhHHHHHHHHHhc----chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHH
Confidence            12344556777877666555554444333    333344454444444433333333333334444443333221  345


Q ss_pred             HHHHHHHhc-CCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhH
Q 015150          224 LPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV  302 (412)
Q Consensus       224 ~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l  302 (412)
                      ++.+..++. +....-+.+.++++..+++.....  ....+..+..++.|...  +.-+...|+.+.+......--...+
T Consensus       393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce~--~~i~~rILhlLG~EgP~a~~Pskyi  468 (865)
T KOG1078|consen  393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCEF--TQIAVRILHLLGKEGPKAPNPSKYI  468 (865)
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhccc--hHHHHHHHHHHhccCCCCCCcchhh
Confidence            566655554 445677888888887777654322  12233333444444322  3334444444443221110011233


Q ss_pred             HHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          303 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       303 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      -.+.+..-=.+..+|.+++.++..++  .+.+...+.+.-.+..++.|++.+||..|.-.+..+-
T Consensus       469 r~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  469 RFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            33333333356789999999999887  3444455667777788889999999988887777664

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.0012  Score=62.33  Aligned_cols=341  Identities=11%  Similarity=0.100  Sum_probs=192.4

Q ss_pred             HHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCC--ChHHHHHHHHHHHHHHHHhCCC-
Q 015150           28 IMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE-  100 (412)
Q Consensus        28 l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~--~~~vR~~~~~~l~~l~~~~~~~-  100 (412)
                      -+.++.+-+. ++-+..|+.|+..+..+++.+..   .....++-..+.++..+|  +|+-+..++..+..++-..+.. 
T Consensus       362 pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~  441 (960)
T KOG1992|consen  362 PLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAK  441 (960)
T ss_pred             HHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhh
Confidence            5555655554 33445678899999999998733   223344555556666664  5887888888777777543211 


Q ss_pred             --------------CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHH
Q 015150          101 --------------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALAT  166 (412)
Q Consensus       101 --------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~  166 (412)
                                    .+..+++|.+..-=.++.+-+|..+++-+..+-..++++..+ .++|.+...++..+.-|-..++.
T Consensus       442 ~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA~  520 (960)
T KOG1992|consen  442 HGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAAI  520 (960)
T ss_pred             cceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHHH
Confidence                          112234444433223567889999998888887777777554 46788888898888888888888


Q ss_pred             HHHhcCcc--------cChhHHHHhhHHHHHHhh---cccChHHHHHHHHHHHHHHHhhchh------hHHhhHHHHHHH
Q 015150          167 VIMGMAPI--------LGKDATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVE  229 (412)
Q Consensus       167 ~l~~l~~~--------~~~~~~~~~l~~~l~~~l---~d~~~~vr~~~~~~l~~i~~~~~~~------~~~~~~~~~l~~  229 (412)
                      ++..+...        ++.+.....+.+.+..+.   +-++..--.-.++++-++.......      .....+...+.+
T Consensus       521 aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~  600 (960)
T KOG1992|consen  521 AIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEE  600 (960)
T ss_pred             HHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHH
Confidence            88876432        333322222233333333   1111111122334444444332211      112333344444


Q ss_pred             HhcC-CCchHHHHHHHHhhHHHhhhChhh------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhH
Q 015150          230 LAED-RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV  302 (412)
Q Consensus       230 ~~~d-~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l  302 (412)
                      ..++ .+|..-+...+.++.+....+...      +...++|.+...+..+-.+.--.+++.++.+++..+. .+.+.+.
T Consensus       601 v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~-~ip~~~~  679 (960)
T KOG1992|consen  601 VSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG-TIPDSYS  679 (960)
T ss_pred             HhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchhHH
Confidence            5555 357777777888888777665433      6778999999988888777777888888888887654 2223333


Q ss_pred             HHHHhhhcCCchHHHH---HHHHHHHHhccccchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150          303 PQVLEMINNPHYLYRM---TILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       303 ~~l~~~~~~~~~~~r~---~~~~~l~~l~~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  372 (412)
                      |.+..++...-|..+.   +.+..+..+.+.-+..    .....++..+.+++.++....  .....+..+...+.+
T Consensus       680 ~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh--~GF~LLn~i~~~~~~  754 (960)
T KOG1992|consen  680 PLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDH--HGFYLLNTIIESIPP  754 (960)
T ss_pred             HHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccch--hHHHHHHHHHhcCCH
Confidence            3333333333344332   3444444444332222    123345555555554433222  334444444444443

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=6.4e-05  Score=69.56  Aligned_cols=156  Identities=18%  Similarity=0.134  Sum_probs=79.7

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLL  185 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  185 (412)
                      =|.+.+++.|.++-.|...+..++----..+..    ..+..+++. .+|.+..||++++.++|-+.-.      .....
T Consensus       521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kair~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~~  590 (929)
T KOG2062|consen  521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQL  590 (929)
T ss_pred             HHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhHHHhhcccccccchHHHHHHHHHheeeEec------Chhhc
Confidence            355666666777777766666554321111222    122333332 4666777777777666655421      11233


Q ss_pred             HHHHHhhccc-ChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH--HHHH
Q 015150          186 PIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKL  262 (412)
Q Consensus       186 ~~l~~~l~d~-~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l  262 (412)
                      |...+++.+. ++.||..++-+|+-.+...|.    +..+..+..+.+|+.--||+.++-.++.+.-+...+..  ...+
T Consensus       591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~f  666 (929)
T KOG2062|consen  591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGF  666 (929)
T ss_pred             hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHH
Confidence            4455554443 567777777777666655552    22344455555666666777666666655544332211  1223


Q ss_pred             HHHHHHHhcCchhH
Q 015150          263 GALCMQWLKDKVYS  276 (412)
Q Consensus       263 ~~~l~~~l~d~~~~  276 (412)
                      ...+.+.+.|.+.+
T Consensus       667 rk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  667 RKQLEKVINDKHED  680 (929)
T ss_pred             HHHHHHHhhhhhhH
Confidence            33444445555443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=0.0023  Score=60.75  Aligned_cols=189  Identities=15%  Similarity=0.187  Sum_probs=124.5

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCC
Q 015150           27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP  101 (412)
Q Consensus        27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~  101 (412)
                      .+-.++..+-...++.....|+.-+..+..--..    ..-.+.+.|.+..++++ .+..+...||++|..+++.++...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            3445555555554565555454444443332222    22345689999999887 578999999999999999887543


Q ss_pred             ---cccchHHHHHH-hcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh
Q 015150          102 ---TRSDVVPAYVR-LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK  177 (412)
Q Consensus       102 ---~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  177 (412)
                         .....+|.+.+ ++.=+.-.|-+.++++|..+...-+.......-+-.....+.--+..+++.|.....+++..+..
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s  327 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS  327 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence               22346777765 55566778999999999998876666544333333333333333445566666666667766655


Q ss_pred             hHH--HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc
Q 015150          178 DAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  215 (412)
Q Consensus       178 ~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~  215 (412)
                      +.+  ....+|.+..++...+...-..+.-++..++..+.
T Consensus       328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            433  35778999999998888888888888888876654

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.37  E-value=0.00039  Score=66.50  Aligned_cols=143  Identities=10%  Similarity=0.152  Sum_probs=98.5

Q ss_pred             HHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHH
Q 015150          238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY  316 (412)
Q Consensus       238 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~  316 (412)
                      +|....-.++.++-.  .+.+...++|++.+-|. .....+|.+..-+++.++..+..  ..+..+|.+...+.|++..+
T Consensus       947 vra~~vvTlakmcLa--h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~iV 1022 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCLA--HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVIV 1022 (1529)
T ss_pred             HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHHH
Confidence            555555555555533  33455668899887665 45677999998889988865533  35779999999999999999


Q ss_pred             HHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh
Q 015150          317 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE  385 (412)
Q Consensus       317 r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~  385 (412)
                      |..++..+.++.+. +--.+.-.++-.++..+-|.++.+|.-+=-.++.+.+.-.|..+...+++.+..
T Consensus      1023 Rrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1023 RRQTIILLARLLQF-GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIA 1090 (1529)
T ss_pred             HHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHH
Confidence            99999999888642 111123334444444556889999999999999998776665444444444433

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.34  E-value=0.00022  Score=61.88  Aligned_cols=178  Identities=20%  Similarity=0.192  Sum_probs=101.5

Q ss_pred             cCCCchHHHHHHHHhhHHHhhh-ChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC----hhhhhhhhHH
Q 015150          232 EDRHWRVRLAIIEYIPLLASQL-GVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG----PDWAMQHIVP  303 (412)
Q Consensus       232 ~d~~~~vr~~~~~~l~~l~~~~-~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~l~  303 (412)
                      .++....|.+++..+..+.... -.+.+   ...+.+.+.+.++....+-+..|+++++-++-.+|    .+.+.+.+.|
T Consensus        53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~  132 (309)
T PF05004_consen   53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKP  132 (309)
T ss_pred             HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Confidence            4445556666655554443221 11111   24456666666665555555566677776666655    2334556777


Q ss_pred             HHHhhhcCCc--hHHHHHHHHHHHHhccccchhH-HHH---hhHHHHHh--hcC-C---------CCchHHHHHHHHHHH
Q 015150          304 QVLEMINNPH--YLYRMTILQAISLLAPVMGSEI-TCS---QLLPVVIN--ASK-D---------RVPNIKFNVAKVLQS  365 (412)
Q Consensus       304 ~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~-~~~---~il~~l~~--~l~-d---------~~~~vR~~~~~~l~~  365 (412)
                      .|...+.|.+  ...|.+++.+++.++-..+.+. -..   ..+..++.  ..+ |         +++.+..+++.+.+-
T Consensus       133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~l  212 (309)
T PF05004_consen  133 VLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWAL  212 (309)
T ss_pred             HHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHH
Confidence            7777777654  4566777777776654333321 111   22331111  111 1         134677777777777


Q ss_pred             HhhhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150          366 LIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       366 l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      +...+++.   ...+..+|.+..++..+|.+||..|.+++.-+.+..
T Consensus       213 Llt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  213 LLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            77766653   233456777777777778888888888888777654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.34  E-value=0.00048  Score=63.49  Aligned_cols=259  Identities=12%  Similarity=0.091  Sum_probs=120.7

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150          108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI  187 (412)
Q Consensus       108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  187 (412)
                      ..++...+- +..++..|...+.++.+.++.-  .+..+..+..++.|.+..||..++..|..++..-  ......+...
T Consensus        26 ~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDv  100 (556)
T PF05918_consen   26 KEILDGVKG-SPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADV  100 (556)
T ss_dssp             HHHHHGGGS--HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred             HHHHHHccC-CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHH
Confidence            334444442 4667777777777777665543  2335666777777777777777777777776532  1233456667


Q ss_pred             HHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh------hhHHHH
Q 015150          188 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV------GFFDDK  261 (412)
Q Consensus       188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~------~~~~~~  261 (412)
                      +.+++..+++.....+-++|..+...-....+ ..++..+..- ...+..+|.-+++.+..-...++.      +.....
T Consensus       101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL-~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~  178 (556)
T PF05918_consen  101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL-TGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEF  178 (556)
T ss_dssp             HHHHTT---HHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHH
Confidence            77777766666666666666666654222222 3333333211 234456777776666443333322      223455


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhhhhhHHHHHhhhc-----C-Cch----HHHHHHHHHHHHhc
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMIN-----N-PHY----LYRMTILQAISLLA  328 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~~~-----~-~~~----~~r~~~~~~l~~l~  328 (412)
                      +...+.+.|.|-..+ -...+..+-...+.++   .......+++.+.+-..     + .+.    ++..++-.++..++
T Consensus       179 i~~~ikkvL~DVTae-EF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs  257 (556)
T PF05918_consen  179 IVDEIKKVLQDVTAE-EFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS  257 (556)
T ss_dssp             HHHHHHHHCTT--HH-HHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B
T ss_pred             HHHHHHHHHHhccHH-HHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc
Confidence            666666777763221 1111111111112211   11223445555554321     1 112    23333334444444


Q ss_pred             cccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH
Q 015150          329 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV  374 (412)
Q Consensus       329 ~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~  374 (412)
                      .......|...+...++.-+++=....|...++++..++...++..
T Consensus       258 ~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d  303 (556)
T PF05918_consen  258 RGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD  303 (556)
T ss_dssp             TTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T
T ss_pred             CCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc
Confidence            4444444444444444445555466788899999999998877643

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=0.00024  Score=65.92  Aligned_cols=156  Identities=20%  Similarity=0.149  Sum_probs=106.1

Q ss_pred             hhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHh-hcccChHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150          145 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  223 (412)
Q Consensus       145 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~  223 (412)
                      .-|++.+++.|.++-.|...+..+.---.--|..    ..+..+... .+|.+.+||.+|.-+|+-++-. +     +..
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kair~lLh~aVsD~nDDVrRaAVialGFVl~~-d-----p~~  589 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-D-----PEQ  589 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhHHHhhcccccccchHHHHHHHHHheeeEec-C-----hhh
Confidence            4578888999999999998876654322112222    233334444 6788999999999999887643 2     234


Q ss_pred             HHHHHH-HhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh--hhh
Q 015150          224 LPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQH  300 (412)
Q Consensus       224 ~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~  300 (412)
                      +|.... +.++-++-||..++.+++-.+...|...    .+.++..+.+|++.-||+.|+.+++-+.-...+...  ...
T Consensus       590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~  665 (929)
T KOG2062|consen  590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNG  665 (929)
T ss_pred             chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHH
Confidence            454444 4556789999999999998888777654    444556668899999999999999988765533211  234


Q ss_pred             hHHHHHhhhcCCch
Q 015150          301 IVPQVLEMINNPHY  314 (412)
Q Consensus       301 ~l~~l~~~~~~~~~  314 (412)
                      +...+.+.+.|++.
T Consensus       666 frk~l~kvI~dKhE  679 (929)
T KOG2062|consen  666 FRKQLEKVINDKHE  679 (929)
T ss_pred             HHHHHHHHhhhhhh
Confidence            55555666666553

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.31  E-value=1.6e-06  Score=53.95  Aligned_cols=52  Identities=21%  Similarity=0.106  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHH
Q 015150          314 YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQS  365 (412)
Q Consensus       314 ~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~  365 (412)
                      |.+|..++.+|+.++...+..  .+.+.++|.+..+++|+++.||..++.+|+.
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            456666666666655444332  3555566666666666666666666666554

...

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.31  E-value=0.00093  Score=58.05  Aligned_cols=183  Identities=17%  Similarity=0.192  Sum_probs=123.9

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHH-hhCHHHH---HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC----hhHH
Q 015150          109 AYVRLLRDNEAEVRIAAAGKVTKICR-ILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDAT  180 (412)
Q Consensus       109 ~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~  180 (412)
                      ..+..+.+.....|..++..+..+.. ++..+.+   ...+++.+.+.++-....-+..++.+++-++-.+|    .+.+
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            34445567778889988888877653 3333322   34467777777765555566677788887777765    2445


Q ss_pred             HHhhHHHHHHhhcccC--hHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHH---H--Hh-c---------CCCchHHHH
Q 015150          181 IEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIV---E--LA-E---------DRHWRVRLA  241 (412)
Q Consensus       181 ~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~---~--~~-~---------d~~~~vr~~  241 (412)
                      .+.+.|.+.+.+.|..  ..+|..++.+|+-+.-..+.  +.+ ...+..+.   .  .. .         .+++.+..+
T Consensus       127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~-~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a  205 (309)
T PF05004_consen  127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEET-EELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA  205 (309)
T ss_pred             HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence            5788899999988864  46777888888776544332  222 21222222   1  11 1         124678999


Q ss_pred             HHHHhhHHHhhhChhh---HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150          242 IIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  292 (412)
Q Consensus       242 ~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  292 (412)
                      ++..++.+...++...   ..+..+|.+..+|..++.+||.+|-++++-+.+..
T Consensus       206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999988776633   23557889999999999999999999999888754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.31  E-value=0.00012  Score=64.32  Aligned_cols=189  Identities=13%  Similarity=0.131  Sum_probs=128.7

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCCc
Q 015150           27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPT  102 (412)
Q Consensus        27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~~  102 (412)
                      .+...+.++-.++..+-|..|..-|..+...-+-   ++....++..+.+.+.| .+...|+.+++.|.+++..-....+
T Consensus       287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~  366 (516)
T KOG2956|consen  287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF  366 (516)
T ss_pred             HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence            3555666666776667788887756555543222   34456677777777777 8899999999999999875333221


Q ss_pred             c--cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH
Q 015150          103 R--SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT  180 (412)
Q Consensus       103 ~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~  180 (412)
                      .  ...+-.+.+...|.+++|-..|.+..........+..-...+-|.+..    .+...-.++++.+..+++.+..+..
T Consensus       367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL  442 (516)
T KOG2956|consen  367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEEL  442 (516)
T ss_pred             chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHH
Confidence            1  223455556667777777666666655544433333233334455544    3444555677788888888877654


Q ss_pred             H---HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH
Q 015150          181 I---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  219 (412)
Q Consensus       181 ~---~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~  219 (412)
                      .   ..+.|.+.+..+..+..||+.++.+|-.+...+|.+.+
T Consensus       443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m  484 (516)
T KOG2956|consen  443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM  484 (516)
T ss_pred             HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh
Confidence            3   57889999999999999999999999999999996554

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.00017  Score=68.11  Aligned_cols=183  Identities=21%  Similarity=0.257  Sum_probs=132.2

Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 015150           68 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI  145 (412)
Q Consensus        68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  145 (412)
                      +......+.|+.+-+|..++..+..+.+.-.+.  .....++......+.|++..|--.|+..+..+++..+++     +
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-----i  803 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-----I  803 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-----h
Confidence            444556677888889999999999999854322  234568889999999999999999999999998875544     5


Q ss_pred             hhhHHHh-c--cC-CcHHHHHHHHHHHHhcCcccChhHH--HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc---h
Q 015150          146 LPCVKEL-S--SD-SSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---I  216 (412)
Q Consensus       146 ~~~l~~~-~--~d-~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~---~  216 (412)
                      +|.+... .  ++ ..++.|-.+.+++++++...|+-.+  ...++..+.+..+|++...|.....+++.++....   .
T Consensus       804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs  883 (982)
T KOG4653|consen  804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS  883 (982)
T ss_pred             HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence            5655542 1  12 2245566666888888877776432  35677778888888888889999999988887754   3


Q ss_pred             hhHHhhHHHHHH-HHhcCCCchHHHHHHHHhhHHHhhhChh
Q 015150          217 DLLSQSLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGVG  256 (412)
Q Consensus       217 ~~~~~~~~~~l~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~  256 (412)
                      +.+ ..++..+. -...|..+-+|++++..+..+....|..
T Consensus       884 d~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d  923 (982)
T KOG4653|consen  884 DFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED  923 (982)
T ss_pred             HHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh
Confidence            433 33333333 3446788899999999998888877753

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.0047  Score=63.74  Aligned_cols=212  Identities=19%  Similarity=0.201  Sum_probs=138.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HHhccCCchHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHhhccC
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIF-EELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQD   77 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l-~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~d   77 (412)
                      |..|-+++++++.++...+...+...+.+.+ .++.+..++..|..-.-+++.+.++.+..   .....-+..++.+.+|
T Consensus       890 p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~D  969 (2067)
T KOG1822|consen  890 PKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATD  969 (2067)
T ss_pred             hHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhc
Confidence            7789999999999999888776666666554 44555556666777788899999887653   3333344577888888


Q ss_pred             CC-hHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHh-cCCC--hHHHHHHHHHHHH------HHHHhhCHHHH----
Q 015150           78 KS-WRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRL-LRDN--EAEVRIAAAGKVT------KICRILNPELA----  141 (412)
Q Consensus        78 ~~-~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~-l~d~--~~~vr~~a~~~l~------~l~~~~~~~~~----  141 (412)
                      +. +.|+..++.++.-+....++-.  .....+..+..+ ++++  ..+++..--.++.      .+...++++..    
T Consensus       970 s~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~ 1049 (2067)
T KOG1822|consen  970 STSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGD 1049 (2067)
T ss_pred             CCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCc
Confidence            65 4999999999998887665433  112233333333 3333  3455555555554      55555555411    


Q ss_pred             -------HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          142 -------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       142 -------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                             ....+-.-.-++..+++.+...+..++.++.-+-+.....+.+++.+..++....--.|.+...++-++...
T Consensus      1050 ~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1050 KDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred             ccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence                   111111111134556888889999988887655555555678999999988887777777777777777554

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.24  E-value=0.00088  Score=62.64  Aligned_cols=370  Identities=13%  Similarity=0.135  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-hhhhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHHHHhCCCCc
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT  102 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-~~~~~~l~~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~~~~~  102 (412)
                      .+..++.+...+.++++.||...++.+..+-+++.. ....-.+-.++.++-+.. +..||..++-.+..-...++.+ .
T Consensus        21 L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~-e   99 (501)
T PF13001_consen   21 LDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDE-E   99 (501)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHH-H
Confidence            334444444445566778999999999999988765 333334555555555544 5888888776665444433322 2


Q ss_pred             ccchHHHHHHhcCCCh---HHHHHHHHHHHHHHHHhhCH----------H------------HHHHhhhhhHHHhc----
Q 015150          103 RSDVVPAYVRLLRDNE---AEVRIAAAGKVTKICRILNP----------E------------LAIQHILPCVKELS----  153 (412)
Q Consensus       103 ~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~~~~~----------~------------~~~~~~~~~l~~~~----  153 (412)
                      ..+++|.+.+.++...   ..........+.-+++....          +            .....+.+...+..    
T Consensus       100 ~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~  179 (501)
T PF13001_consen  100 RRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQP  179 (501)
T ss_pred             HHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHHHHHcchhhcccccccc
Confidence            4568888888776321   11222222222222222110          0            00001111111110    


Q ss_pred             -----------cC-----------------------CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHH
Q 015150          154 -----------SD-----------------------SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDV  199 (412)
Q Consensus       154 -----------~d-----------------------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  199 (412)
                                 .+                       .-.++|..+++.+..-.  +.    .+..++.+.-...|+..+|
T Consensus       180 ~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~--f~----d~~~~~~~liAsad~~~~V  253 (501)
T PF13001_consen  180 NRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGF--FP----DEERFPPLLIASADSNSSV  253 (501)
T ss_pred             ccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcC--CC----cHhHHhheeeEEeCCcchH
Confidence                       00                       00012222222221111  00    1123333333345666777


Q ss_pred             HHHHHHHHHHHHHhhchhhHHhhHHHHHH--HHhc-----CCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC
Q 015150          200 RLNIISKLDQVNQVIGIDLLSQSLLPAIV--ELAE-----DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD  272 (412)
Q Consensus       200 r~~~~~~l~~i~~~~~~~~~~~~~~~~l~--~~~~-----d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  272 (412)
                      -..+-..|.++...+....+.+.++..+.  ..-.     -.++.+|..++..+   ++........+..+.++...+.+
T Consensus       254 ~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~~Aa~~~~~~~~i~~~~l~~  330 (501)
T PF13001_consen  254 SDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSVIAATSFPNILQIVFDGLYS  330 (501)
T ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhHHHHhCCccHHHHHhccccC
Confidence            77777777777655554444445554444  1111     12456666555444   33332222335567777777777


Q ss_pred             c--hhHHHHHHHHHH---HHHHHHhChhhh---hhhhHHHHHhhhc--------CCchHHHHHHHHHHHHhccccchhH-
Q 015150          273 K--VYSIRDAAANNV---KRLAEEFGPDWA---MQHIVPQVLEMIN--------NPHYLYRMTILQAISLLAPVMGSEI-  335 (412)
Q Consensus       273 ~--~~~vr~~a~~~l---~~l~~~~~~~~~---~~~~l~~l~~~~~--------~~~~~~r~~~~~~l~~l~~~~~~~~-  335 (412)
                      +  +..+|..+++.+   ......+++...   .+.++..+.....        ..+...|..+.+++|.++...+.-. 
T Consensus       331 ~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~  410 (501)
T PF13001_consen  331 DNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS  410 (501)
T ss_pred             CccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc
Confidence            7  678888888888   777776665432   2233333333332        2346799999999999998766542 


Q ss_pred             HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH-----HHhhHHH-HHHhhcCCCCccHHHHHHHHHHH
Q 015150          336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV-----VEKSIRP-CLVELSEDPDVDVRFFATQALQS  404 (412)
Q Consensus       336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~-----~~~~i~~-~l~~l~~d~~~~vr~~a~~al~~  404 (412)
                      -.-.++..++..+.++.+++|.++-.+|+.+...+....     .....+. .+.....+....+|..|.+-...
T Consensus       411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~  485 (501)
T PF13001_consen  411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANA  485 (501)
T ss_pred             ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            123567777777889999999999999999987765421     1112222 22234455666677777665443

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.22  E-value=2.7e-06  Score=52.99  Aligned_cols=53  Identities=26%  Similarity=0.230  Sum_probs=45.3

Q ss_pred             chHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150          353 PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSK  405 (412)
Q Consensus       353 ~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  405 (412)
                      |.||..++.+|+.+....+..  .+.+.++|.|..+++|++++||..|+.+|+.|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            579999999999977554442  46789999999999999999999999999865

...

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=0.00033  Score=64.71  Aligned_cols=145  Identities=24%  Similarity=0.221  Sum_probs=101.9

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-------HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc----c
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI----L  175 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~----~  175 (412)
                      =|.+.+.++-++..||..|+..+..+....+++       ...+.=...+.++++|+.+.||..+..-+..+...    +
T Consensus       176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i  255 (1005)
T KOG1949|consen  176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI  255 (1005)
T ss_pred             hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            355666778888899999888888776655554       22333445667788899999998887766655432    3


Q ss_pred             ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150          176 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  251 (412)
Q Consensus       176 ~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  251 (412)
                      ++....+-+-..+-.+..|...+||.++.+.+..++..-......+.++|.+...+.|+..+||.+++..+..+-.
T Consensus       256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            4444444444445556677778899888888888876644444557788888888888889999988887766543

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.19  E-value=0.0041  Score=63.16  Aligned_cols=327  Identities=14%  Similarity=0.076  Sum_probs=165.4

Q ss_pred             hccCCChHHHHHHHHHHHHHHHHhCCCCcc-----cchHHHHHH---hcCCC---hHHHHHHHHHHHHHHHH-----hhC
Q 015150           74 FSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVR---LLRDN---EAEVRIAAAGKVTKICR-----ILN  137 (412)
Q Consensus        74 l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~---~l~d~---~~~vr~~a~~~l~~l~~-----~~~  137 (412)
                      +++++|..||...+-|++.|.+...++.-.     .+++..+..   .+.|.   ...-+..-++.+..+.-     -..
T Consensus        58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d  137 (1266)
T KOG1525|consen   58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED  137 (1266)
T ss_pred             HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence            567899999999999999999987765421     223333332   23443   22223333333333220     012


Q ss_pred             HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH-HHHHhhc---ccChHHHHHHHHHHHHHHHh
Q 015150          138 PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP-IFLSLLK---DEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       138 ~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~---d~~~~vr~~~~~~l~~i~~~  213 (412)
                      .+.....++..+.....+..+.---.....+..+....  +.+...++. .|.+++.   |..++-+.-+-..+...+..
T Consensus       138 ~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~  215 (1266)
T KOG1525|consen  138 CQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADN  215 (1266)
T ss_pred             hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhh
Confidence            23444555566666664433321111222222222111  112223333 3334443   33334444444444444433


Q ss_pred             hchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150          214 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG  293 (412)
Q Consensus       214 ~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  293 (412)
                      +..+ +.+.+...+..... ..-.++...-+.+-.+.... ++ ..-.+.|.+..-|...+..+|..|...+|.+....+
T Consensus       216 ~~~~-i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~-p~-ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~  291 (1266)
T KOG1525|consen  216 LEDT-IANFLNSCLTEYKS-RQSSLKIKYHELILELWRIA-PQ-LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD  291 (1266)
T ss_pred             hchh-HHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhh-HH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch
Confidence            3211 11122222221111 11112222222222222211 11 223377888877888889999999999999887554


Q ss_pred             hhhh--hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150          294 PDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  371 (412)
Q Consensus       294 ~~~~--~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  371 (412)
                      ....  .+.+...++..+.|.+..+|..+++....+.-..+.-  .......+.....|.++.+|....-++......--
T Consensus       292 ~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~--~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~  369 (1266)
T KOG1525|consen  292 SQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI--AKASTILLALRERDLDEDVRVRTQVVIVACDVMKF  369 (1266)
T ss_pred             hhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh--hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHh
Confidence            4333  3557777888889999999999999998876443221  12222222222344445555333222211100000


Q ss_pred             hHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          372 QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       372 ~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      .-.+.+.++..+...+.|.-+.||..|+..+..+.+.
T Consensus       370 ~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  370 KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            0012223777777788999999999999999999884

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.0015  Score=61.86  Aligned_cols=152  Identities=13%  Similarity=0.147  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHh-hccCCChHHHHHHHHHHHHHHHHhCC
Q 015150           25 KSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGP   99 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~-l~~d~~~~vR~~~~~~l~~l~~~~~~   99 (412)
                      .+.+.|.+..+++++ +.++-..||+++..+++-+|+.   -.....+|.++. +..-.--.|-+.++++|..|.+..+.
T Consensus       209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~  288 (1051)
T KOG0168|consen  209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK  288 (1051)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence            456788888888766 6788899999999999998873   123347777765 34445567889999999999987665


Q ss_pred             CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH--HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC
Q 015150          100 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG  176 (412)
Q Consensus       100 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  176 (412)
                      .....--+-.+..++.==.-.++..|+....+.++.+.++.  +.-..+|.+..+++..+..+-..++-++..++..+.
T Consensus       289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            54443333334443332235678888888899999887763  345578999999988888888889999988887663

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.17  E-value=0.0016  Score=59.21  Aligned_cols=172  Identities=16%  Similarity=0.119  Sum_probs=119.3

Q ss_pred             HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH
Q 015150          181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  258 (412)
Q Consensus       181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~  258 (412)
                      .+.++-++.+.....+..||...++-+..+...+++  +.+.+.++..+.+.+-|..+.||..++.++..+-+.-+.+. 
T Consensus        89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-  167 (885)
T COG5218          89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-  167 (885)
T ss_pred             HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-
Confidence            344555556666777899999999999999888885  56667777888888889999999999999887776554432 


Q ss_pred             HHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHH-HHHHHHHHHHhccccchhHH
Q 015150          259 DDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY-RMTILQAISLLAPVMGSEIT  336 (412)
Q Consensus       259 ~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~-r~~~~~~l~~l~~~~~~~~~  336 (412)
                       ..+..++... -+|++.+||..|+..+..          .+.-.|.+++...|-+-.. |...-+++..+......+ .
T Consensus       168 -n~~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls-i  235 (885)
T COG5218         168 -NRIVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS-I  235 (885)
T ss_pred             -HHHHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-c
Confidence             1233333333 369999999998776532          2445688888888876444 445566777665433222 2


Q ss_pred             HHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          337 CSQLLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                      .++++ .+--.+.|....||.++..++..-
T Consensus       236 ~kri~-l~ewgl~dRe~sv~~a~~d~ia~~  264 (885)
T COG5218         236 DKRIL-LMEWGLLDREFSVKGALVDAIASA  264 (885)
T ss_pred             cceeh-hhhhcchhhhhhHHHHHHHHHHHH
Confidence            34444 445568899999999999888643

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.0014  Score=60.76  Aligned_cols=145  Identities=16%  Similarity=0.133  Sum_probs=109.1

Q ss_pred             hHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh-------HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh----
Q 015150          184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ----  252 (412)
Q Consensus       184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~-------~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~----  252 (412)
                      .-|.+.+.++-.+.+||.+|+..+-.+.+..+++.       +.+.-...+..+++|+.|.||..++..+..+...    
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            34778888888899999998888777766655442       3445566778889999999999887766655443    


Q ss_pred             hChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150          253 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA  328 (412)
Q Consensus       253 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~  328 (412)
                      +++....+-+..++-.+-.|...+||-+.+..+..++.+-......+.++|.+-..+.|++.+||.++++.+..+-
T Consensus       255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            3555555545555556667888899999999998888654444556788898888999999999999999887763

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=98.13  E-value=0.0024  Score=53.95  Aligned_cols=143  Identities=10%  Similarity=0.031  Sum_probs=78.6

Q ss_pred             HHHhccCCchHHHHHHHHhHHHHhhccCchhh----hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC-CCcccch
Q 015150           32 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSDV  106 (412)
Q Consensus        32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~----~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l  106 (412)
                      +...+.++++.+|..|+..|+.+...++++..    ...+..++..-+.|  +..-..++.++..+...-.- ......+
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~~~~~~i   81 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSPESAVKI   81 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCChhhHHHH
Confidence            34557888899999999999999999886433    34466677766654  33333447777777632110 1111223


Q ss_pred             HHHHHHhcC--CChHHHHHHHHHHHHHHHHhhCHHH--HHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCcccC
Q 015150          107 VPAYVRLLR--DNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG  176 (412)
Q Consensus       107 ~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~  176 (412)
                      +..+.+...  .--...|..+.+.+..+.+......  ....++..+.+.+ ..++|+.-..+.+.+..+...+.
T Consensus        82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            333333222  2235678888888877766543221  1122333333333 34566555555555555444433

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.10  E-value=0.0027  Score=59.47  Aligned_cols=342  Identities=15%  Similarity=0.126  Sum_probs=180.2

Q ss_pred             hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh--HHHHHHHHHHHHHHHHhhCHHHHH
Q 015150           65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELAI  142 (412)
Q Consensus        65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~  142 (412)
                      ...+|.++..+.+++..||...++.+.++...+.......-=+..+.+..++++  ..||..++--+..-.+.++.++- 
T Consensus        22 ~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~-  100 (501)
T PF13001_consen   22 DKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEER-  100 (501)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHH-
Confidence            334555555556678899999999999998887764433323444555555554  78888887666554455544433 


Q ss_pred             HhhhhhHHHhccCCcH---HH---HHHHHHHHHhcCcccCh-----h--------------HHHHhhHHHHHHhhc----
Q 015150          143 QHILPCVKELSSDSSQ---HV---RSALATVIMGMAPILGK-----D--------------ATIEQLLPIFLSLLK----  193 (412)
Q Consensus       143 ~~~~~~l~~~~~d~~~---~v---r~~~~~~l~~l~~~~~~-----~--------------~~~~~l~~~l~~~l~----  193 (412)
                      ..++|.+.+.++....   ..   ....+..+..+......     +              .....+.+.+...+.    
T Consensus       101 ~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~~  180 (501)
T PF13001_consen  101 RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQPN  180 (501)
T ss_pred             HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHHHHHcchhhccccccccc
Confidence            3467777776653211   11   11111122222211100     0              001122222222210    


Q ss_pred             ----------ccChHHHHHHHH-------------HHH----HHHHhhchhhH-HhhHHHHHHHHhcCCCchHHHHHHHH
Q 015150          194 ----------DEFPDVRLNIIS-------------KLD----QVNQVIGIDLL-SQSLLPAIVELAEDRHWRVRLAIIEY  245 (412)
Q Consensus       194 ----------d~~~~vr~~~~~-------------~l~----~i~~~~~~~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~  245 (412)
                                .+.+-.-.....             .+.    .+.+.+....+ ....++.++-...|++.+|-..+-..
T Consensus       181 ~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~  260 (501)
T PF13001_consen  181 RAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDL  260 (501)
T ss_pred             cccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHH
Confidence                      000000000000             000    00111111111 01233333334466777777777777


Q ss_pred             hhHHHhhhChhhHHHHHHHHHHH--Hhc-----CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC--chHH
Q 015150          246 IPLLASQLGVGFFDDKLGALCMQ--WLK-----DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP--HYLY  316 (412)
Q Consensus       246 l~~l~~~~~~~~~~~~l~~~l~~--~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~--~~~~  316 (412)
                      +..+...+....+.+.+..++..  .-.     --++.+|...+..|.+-....   ...+.++..+...+..+  +.+.
T Consensus       261 LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa---~~~~~~~~i~~~~l~~~~~~~kl  337 (501)
T PF13001_consen  261 LKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA---TSFPNILQIVFDGLYSDNTNSKL  337 (501)
T ss_pred             HhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH---hCCccHHHHHhccccCCcccccc
Confidence            77666665555555556655552  110     124556666655555433211   11234555555555555  6789


Q ss_pred             HHHHHHHH---HHhccccchh---HHHHhhHHHHHhhcC--------CCCchHHHHHHHHHHHHhhhhchHH-HHhhHHH
Q 015150          317 RMTILQAI---SLLAPVMGSE---ITCSQLLPVVINASK--------DRVPNIKFNVAKVLQSLIPIVDQSV-VEKSIRP  381 (412)
Q Consensus       317 r~~~~~~l---~~l~~~~~~~---~~~~~il~~l~~~l~--------d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~i~~  381 (412)
                      |..+++.+   ......++..   .+.+.++......++        ......|..+..+||.+++....-. -.-.++.
T Consensus       338 k~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~  417 (501)
T PF13001_consen  338 KSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIE  417 (501)
T ss_pred             chhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHH
Confidence            99999999   7777766654   233344444444442        2356789999999999988755432 1123455


Q ss_pred             HHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          382 CLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       382 ~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      .+-..+.++++++|....+|+..+..+..
T Consensus       418 ~LF~sL~~~~~evr~sIqeALssl~~af~  446 (501)
T PF13001_consen  418 FLFDSLEDESPEVRVSIQEALSSLAPAFK  446 (501)
T ss_pred             HHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence            55554588999999999999999988763

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.07  E-value=0.016  Score=59.16  Aligned_cols=351  Identities=13%  Similarity=0.114  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHHh---hh-hhhHHHHHHHHHH-----hccCCchHHHHHHHHhHHHHhhccCch-----hhhhhhHHHH
Q 015150            6 RSAATNLGKFAATV---EA-AHLKSEIMSIFEE-----LTQDDQDSVRLLAVEGCGALGKLLEPQ-----DCVAHILPVI   71 (412)
Q Consensus         6 ~~a~~~l~~~~~~~---~~-~~~~~~l~~~l~~-----l~~~~~~~~r~~a~~~l~~i~~~~~~~-----~~~~~l~~~l   71 (412)
                      ...++-|..+...+   .+ +.....+.|+...     ++++++-.+|...+-++..+.+-..|+     ....+++.++
T Consensus        20 ~ell~rLk~l~~~l~~~~qd~~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~   99 (1266)
T KOG1525|consen   20 DELLKRLKKLANCLASLDQDNLDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLI   99 (1266)
T ss_pred             HHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            33444444444433   22 2344556665544     456777789998888888888766542     2334444444


Q ss_pred             Hh---hccC---CChHHHHHHHHHHHHHHHHhC--CCCcccc----hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH
Q 015150           72 VN---FSQD---KSWRVRYMVANQLYELCEAVG--PEPTRSD----VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE  139 (412)
Q Consensus        72 ~~---l~~d---~~~~vR~~~~~~l~~l~~~~~--~~~~~~~----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  139 (412)
                      ..   .+.|   |...-+...++.+..+. .+-  .....++    ++..+...+.+..+.--......+..+...  .+
T Consensus       100 ~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e--~d  176 (1266)
T KOG1525|consen  100 LSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITE--ED  176 (1266)
T ss_pred             HHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--hc
Confidence            43   2333   44455656666665554 211  1112233    444444444443332222222222222111  11


Q ss_pred             HHHHhhhhhHHH-hc---cCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh-ccc--ChHHHHHHHHHHHHHHH
Q 015150          140 LAIQHILPCVKE-LS---SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDE--FPDVRLNIISKLDQVNQ  212 (412)
Q Consensus       140 ~~~~~~~~~l~~-~~---~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~--~~~vr~~~~~~l~~i~~  212 (412)
                      .....++..++. ++   .|....-+..+-..+..++..+..     .+-..+.+.+ .+.  ...++...-.-+-.+-.
T Consensus       177 ~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~-----~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~  251 (1266)
T KOG1525|consen  177 TVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLED-----TIANFLNSCLTEYKSRQSSLKIKYHELILELWR  251 (1266)
T ss_pred             cchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhch-----hHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            222233333332 22   333444444444444444433221     1112222221 111  11111111111111111


Q ss_pred             hhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150          213 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  290 (412)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  290 (412)
                      . .++. .-.++|.+..-+...+..+|..+++.++.+....+....  .+.++..++..+.|...+||...++....++.
T Consensus       252 ~-~p~l-l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~  329 (1266)
T KOG1525|consen  252 I-APQL-LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL  329 (1266)
T ss_pred             h-hHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence            1 1222 256778888878888899999999999999876655444  56688888999999999999999999888876


Q ss_pred             HhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc-ccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150          291 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP-VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  369 (412)
Q Consensus       291 ~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~-~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  369 (412)
                      ......-...+.-.+...  |.++.+|....-.+..+.. .+....... ++..+.+.+.|+.+.||..|+..|..+++.
T Consensus       330 ~~~~~~~~~~~~~~l~~~--~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  330 NNPSIAKASTILLALRER--DLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             cCchhhhHHHHHHHHHhh--cCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            532211111222233333  3444444433322222110 011112233 777778889999999999999999999874

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.03  E-value=0.0071  Score=55.89  Aligned_cols=303  Identities=16%  Similarity=0.092  Sum_probs=174.8

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----------cccchHH--HHHHhcCCChHHHHHHHHHHHHHHHH
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----------TRSDVVP--AYVRLLRDNEAEVRIAAAGKVTKICR  134 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----------~~~~l~~--~l~~~l~d~~~~vr~~a~~~l~~l~~  134 (412)
                      +...+.-+...-+..+|.++..++......+.++.          ....+.+  .+.++.+|++..-|..++.++..+..
T Consensus       182 i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~  261 (678)
T KOG1293|consen  182 ILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLR  261 (678)
T ss_pred             chhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHh
Confidence            34444444444567889999998884222221111          1123344  45678889999999888888877655


Q ss_pred             hhCHH---HHHH--------hhhhh-HHHhccCCcHHHHHHHHHHHHh---cCcccChhHHHHhhHHHHHHh------hc
Q 015150          135 ILNPE---LAIQ--------HILPC-VKELSSDSSQHVRSALATVIMG---MAPILGKDATIEQLLPIFLSL------LK  193 (412)
Q Consensus       135 ~~~~~---~~~~--------~~~~~-l~~~~~d~~~~vr~~~~~~l~~---l~~~~~~~~~~~~l~~~l~~~------l~  193 (412)
                      .-..+   .+..        .+..+ -..+..|+-+.--...+..+..   +++............+...++      ++
T Consensus       262 ~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~  341 (678)
T KOG1293|consen  262 KSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLA  341 (678)
T ss_pred             ccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHh
Confidence            33111   1100        11111 1122344444322222222222   222222221111222222222      23


Q ss_pred             ccChHHHHHHHHHHHHH---HHhhchhh----HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHH
Q 015150          194 DEFPDVRLNIISKLDQV---NQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLG  263 (412)
Q Consensus       194 d~~~~vr~~~~~~l~~i---~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~  263 (412)
                      ...+..|.-++......   +...+...    ........+.......+...+.+++.++..+++....   ..-..++.
T Consensus       342 a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~  421 (678)
T KOG1293|consen  342 ASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVA  421 (678)
T ss_pred             hcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhH
Confidence            34455565554432222   11122111    1111122222233345677888888888887766521   12234566


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh----HH
Q 015150          264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----IT  336 (412)
Q Consensus       264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~  336 (412)
                      ..+++++.|++..|...++.++..++-.+++   .++....+..+.....++...+|..+++++..+.-....+    ++
T Consensus       422 ~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~  501 (678)
T KOG1293|consen  422 QPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLL  501 (678)
T ss_pred             HHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            6678888999999999999999999877764   4556778889999999999999999999999987554443    23


Q ss_pred             HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150          337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  369 (412)
Q Consensus       337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  369 (412)
                      .+.-...+..+.+|+.+.|...++..+.++...
T Consensus       502 ~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  502 AKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            334455677888999999999999999888643

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=98.02  E-value=0.0058  Score=51.64  Aligned_cols=222  Identities=14%  Similarity=0.150  Sum_probs=127.0

Q ss_pred             hccCCcHHHHHHHHHHHHhcCcccChhHH----HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--hhhHHhhHHH
Q 015150          152 LSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLP  225 (412)
Q Consensus       152 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~~~~~~~~~~  225 (412)
                      .+.++++.+|..+...+..+...++++..    .+-++..+.+-+.| ...+. .++.++..+.+.-.  .+. ...++.
T Consensus         7 ~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~-~~l~gl~~L~~~~~~~~~~-~~~i~~   83 (262)
T PF14500_consen    7 YLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQ-PALKGLLALVKMKNFSPES-AVKILR   83 (262)
T ss_pred             hhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHH-HHHHHHHHHHhCcCCChhh-HHHHHH
Confidence            34455555555555555555544443221    23455566666644 23333 33666666553322  222 123333


Q ss_pred             HHHHHhc--CCCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhChhhhhhh
Q 015150          226 AIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQH  300 (412)
Q Consensus       226 ~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  300 (412)
                      .+.+-..  .-....|..+.+.+..+........  ..+.++..+++.+ +..+|.--..+++.+..+...+....+.+.
T Consensus        84 ~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~  163 (262)
T PF14500_consen   84 SLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAED  163 (262)
T ss_pred             HHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            3332111  2234578888888877776543221  2233444555544 356777777888888888887765555566


Q ss_pred             hHHHHHhhh--------cCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150          301 IVPQVLEMI--------NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       301 ~l~~l~~~~--------~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  372 (412)
                      ++..+..++        +|+.-..|+.....+.....  +...|.+..+|.++.-|.+..+.+|.-++++|......+|.
T Consensus       164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~  241 (262)
T PF14500_consen  164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA  241 (262)
T ss_pred             HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence            665555433        23322344444444433321  22347789999999999999999999999999999999988


Q ss_pred             HHHHhh
Q 015150          373 SVVEKS  378 (412)
Q Consensus       373 ~~~~~~  378 (412)
                      ....+.
T Consensus       242 ~~~~~~  247 (262)
T PF14500_consen  242 DSLSPH  247 (262)
T ss_pred             HHHHHH
Confidence            644433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.02  E-value=1.1e-05  Score=43.15  Aligned_cols=28  Identities=32%  Similarity=0.428  Sum_probs=12.9

Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHHHHH
Q 015150           68 LPVIVNFSQDKSWRVRYMVANQLYELCE   95 (412)
Q Consensus        68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~   95 (412)
                      +|.+.++++|++|+||.+++.+|+.+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            3444444444444444444444444443

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.01  E-value=1.1e-05  Score=43.07  Aligned_cols=30  Identities=37%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI  135 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  135 (412)
                      ++|.+.++++|++++||.+|+.+++.++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            467777777777777777777777777664

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.01  E-value=0.011  Score=53.93  Aligned_cols=212  Identities=17%  Similarity=0.141  Sum_probs=130.1

Q ss_pred             hhhHHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCc-----hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 015150           22 AHLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP-----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE   95 (412)
Q Consensus        22 ~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~   95 (412)
                      +.+...++..+...+. ..++.+-...++.+..+..+.-+     +......+..++.....++..||..+++.|+.+..
T Consensus        41 ~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d  120 (885)
T COG5218          41 HEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD  120 (885)
T ss_pred             HhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence            3344445555444332 22233334445666666664322     23344455566677788999999999999999988


Q ss_pred             HhCC--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcC
Q 015150           96 AVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALATVIMGMA  172 (412)
Q Consensus        96 ~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~  172 (412)
                      ..+.  +...+-++..+.+.+-|.++.||..|+.+|..+-+--+.+.  +.+...+...+ +|++.+||..+...+..  
T Consensus       121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~v--  196 (885)
T COG5218         121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNISV--  196 (885)
T ss_pred             hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHeee--
Confidence            7765  33445567777778889999999999999988765444332  12333444444 68999999988654432  


Q ss_pred             cccChhHHHHhhHHHHHHhhcccChHHHHHHH-HHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhh
Q 015150          173 PILGKDATIEQLLPIFLSLLKDEFPDVRLNII-SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  247 (412)
Q Consensus       173 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~-~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~  247 (412)
                              .+.-.|.+..-..|-+...|.-.. ..|++++.... ..+.+.++ .+.--+.|.+..+|.++...+.
T Consensus       197 --------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~-lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia  262 (885)
T COG5218         197 --------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKS-LSIDKRIL-LMEWGLLDREFSVKGALVDAIA  262 (885)
T ss_pred             --------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh-ccccceeh-hhhhcchhhhhhHHHHHHHHHH
Confidence                    234567788878887766665433 35555543311 11112222 3444567777788887776653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=0.00081  Score=65.06  Aligned_cols=226  Identities=17%  Similarity=0.171  Sum_probs=149.5

Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH---HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc--
Q 015150          101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPIL--  175 (412)
Q Consensus       101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--  175 (412)
                      ...++=+|.+.+.+-+  ...|-.|+..|++|...-+-...   .-.|+|+++++++.+-.+.|...+-...+|...-  
T Consensus       468 r~PPeQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~S  545 (1387)
T KOG1517|consen  468 RTPPEQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPS  545 (1387)
T ss_pred             CCChHhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCch
Confidence            3444556666665443  55688888888888765433321   2248999999999999999998887777765321  


Q ss_pred             -ChhHHHHhhHHHHHHhhcc-c--ChHHHHHHHHHHHHHHHhhc---hhhHHhhHHHHHHHHhcCC-CchHHHHHHHHhh
Q 015150          176 -GKDATIEQLLPIFLSLLKD-E--FPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIP  247 (412)
Q Consensus       176 -~~~~~~~~l~~~l~~~l~d-~--~~~vr~~~~~~l~~i~~~~~---~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~  247 (412)
                       ..+.+.+..-.++.+.+.+ .  +++-|..++=.|..|...+.   ..-+...++..-...++|+ .|=.|+=++-+|+
T Consensus       546 CQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG  625 (1387)
T KOG1517|consen  546 CQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLG  625 (1387)
T ss_pred             hHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence             1122222222344555555 2  35888888888888887754   2334556777777777884 7888998999999


Q ss_pred             HHHhhhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh------------------hhhhhhHH---
Q 015150          248 LLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD------------------WAMQHIVP---  303 (412)
Q Consensus       248 ~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------------------~~~~~~l~---  303 (412)
                      .+-+.+....+   .......+...|.|+.++||.+|+-+|+.++.....+                  ...+..++   
T Consensus       626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~  705 (1387)
T KOG1517|consen  626 RLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGL  705 (1387)
T ss_pred             HHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhH
Confidence            88665543222   1234455677799999999999999999999863110                  00122333   


Q ss_pred             -HHHhhhcCCchHHHHHHHHHHHHhc
Q 015150          304 -QVLEMINNPHYLYRMTILQAISLLA  328 (412)
Q Consensus       304 -~l~~~~~~~~~~~r~~~~~~l~~l~  328 (412)
                       .+....+|.+.-+|...+.++..+.
T Consensus       706 ~~ll~~vsdgsplvr~ev~v~ls~~~  731 (1387)
T KOG1517|consen  706 MSLLALVSDGSPLVRTEVVVALSHFV  731 (1387)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHH
Confidence             4566778888888888888887765

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.95  E-value=0.027  Score=59.98  Aligned_cols=304  Identities=11%  Similarity=0.104  Sum_probs=175.9

Q ss_pred             HHHHHHHhHHHHhhccCc------hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC------cccchHHHH
Q 015150           43 VRLLAVEGCGALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------TRSDVVPAY  110 (412)
Q Consensus        43 ~r~~a~~~l~~i~~~~~~------~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~------~~~~l~~~l  110 (412)
                      -|..++.-+..++.+.-.      ...+..+-+.+.+...+++..++..++..|..++..+-...      +..+++..+
T Consensus      1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076       1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred             CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence            477777777777766433      12344455566666567778899999999988887655321      234566666


Q ss_pred             HHhc-CCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc-cC---h--hHHH
Q 015150          111 VRLL-RDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI-LG---K--DATI  181 (412)
Q Consensus       111 ~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~-~~---~--~~~~  181 (412)
                      ...+ +..+.+||...++++..+.......  .....++..+.....++++.+-..+.+.+..+... ++   .  ....
T Consensus      1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076       1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence            5543 4567799999999999887765443  12233555555556677777777787777665432 21   1  1122


Q ss_pred             HhhHHHHHHhhccc-ChHHHHHHHHHHHHHHHhhc-----------------------------------hhhHHhhHHH
Q 015150          182 EQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG-----------------------------------IDLLSQSLLP  225 (412)
Q Consensus       182 ~~l~~~l~~~l~d~-~~~vr~~~~~~l~~i~~~~~-----------------------------------~~~~~~~~~~  225 (412)
                      ..++..+..+.+.. +.++-..++..|..++..+-                                   .+......+|
T Consensus      1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076       1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred             HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence            35555665555432 24444445554443322220                                   0011122344


Q ss_pred             HH---HHHhcCCCchHHHHHHHHhhHHHhhhChh----h----HHHHHHHHHHHHhc----------------------C
Q 015150          226 AI---VELAEDRHWRVRLAIIEYIPLLASQLGVG----F----FDDKLGALCMQWLK----------------------D  272 (412)
Q Consensus       226 ~l---~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~----~~~~l~~~l~~~l~----------------------d  272 (412)
                      .+   .++..|+...||..++..|-.+....|..    .    +...+.|++-.+-.                      +
T Consensus      1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076       1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence            44   45578999999999999887777666643    2    22345555433210                      1


Q ss_pred             chhHHHHHHHHHHHHHHHHhCh-----hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHH
Q 015150          273 KVYSIRDAAANNVKRLAEEFGP-----DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVV  344 (412)
Q Consensus       273 ~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l  344 (412)
                      ...++.+....++..++..+..     ....+.++..+......++..+-..+..++..+....|..   ..+..+...+
T Consensus      1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~ 1507 (1780)
T PLN03076       1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSL 1507 (1780)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence            1223556666666655554432     1123445555556667778787788888888887665543   2344444444


Q ss_pred             Hh
Q 015150          345 IN  346 (412)
Q Consensus       345 ~~  346 (412)
                      .+
T Consensus      1508 ~~ 1509 (1780)
T PLN03076       1508 KE 1509 (1780)
T ss_pred             HH
Confidence            33

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.95  E-value=0.0015  Score=63.60  Aligned_cols=162  Identities=19%  Similarity=0.214  Sum_probs=95.0

Q ss_pred             HHHHHHHHhcC----CCchHHHHHHHHhhHHHhhhChh----------------hHHHHHHHHHHHHhcCchhHHHHHHH
Q 015150          223 LLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLKDKVYSIRDAAA  282 (412)
Q Consensus       223 ~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~a~  282 (412)
                      ++..+..+++.    .++.++.+++-.++.+.......                .+.+.+...+.......+.+-+..++
T Consensus       432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L  511 (618)
T PF01347_consen  432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL  511 (618)
T ss_dssp             HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence            34444444433    34567777777777766543211                12334444444445566677888888


Q ss_pred             HHHHHHHHHhChhhhhhhhHHHHHhhhcCC---chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHH
Q 015150          283 NNVKRLAEEFGPDWAMQHIVPQVLEMINNP---HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV  359 (412)
Q Consensus       283 ~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~---~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~  359 (412)
                      ++||.+..        ...++.+...+.+.   ...+|.+|+.++..+...+... ..+.++|.+.+  ....+++|.+|
T Consensus       512 kaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-v~~~l~~I~~n--~~e~~EvRiaA  580 (618)
T PF01347_consen  512 KALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-VREILLPIFMN--TTEDPEVRIAA  580 (618)
T ss_dssp             HHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-HHHHHHHHHH---TTS-HHHHHHH
T ss_pred             HHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-HHHHHHHHhcC--CCCChhHHHHH
Confidence            88887642        34667777777665   5789999999999886554332 45555555554  23457899999


Q ss_pred             HHHHHHHhhhhchHHHHhhHHHHHHh-hcCCCCccHHHHHHHHH
Q 015150          360 AKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQAL  402 (412)
Q Consensus       360 ~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al  402 (412)
                      ...|-..-+.       ..++..+.. +-.+++..|+..+...|
T Consensus       581 ~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  581 YLILMRCNPS-------PSVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHHHHHT----------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             HHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence            8877765331       223333333 56899999998887765

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.91  E-value=0.0082  Score=52.35  Aligned_cols=213  Identities=15%  Similarity=0.127  Sum_probs=108.6

Q ss_pred             hcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh-----------hHHH
Q 015150          192 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-----------FFDD  260 (412)
Q Consensus       192 l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----------~~~~  260 (412)
                      ++..++.+|..+++++|-.+-. +. ......++.+...++..+..+|..+++++-.+....|..           ....
T Consensus        36 v~~~~~~vR~~al~cLGl~~Ll-d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~  113 (298)
T PF12719_consen   36 VQSSDPAVRELALKCLGLCCLL-DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSK  113 (298)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHh
Confidence            3344445555555555444322 11 111233333433333334455555555444444443322           1234


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc----CCchHHHHHHHHHHHHhccccch--h
Q 015150          261 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN----NPHYLYRMTILQAISLLAPVMGS--E  334 (412)
Q Consensus       261 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~----~~~~~~r~~~~~~l~~l~~~~~~--~  334 (412)
                      .+..++.+.+.+.++++|..|++.+.++.-.-.... ...++..+.-.+-    .++.++|++.-.++..++..-..  +
T Consensus       114 ~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~  192 (298)
T PF12719_consen  114 SLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQE  192 (298)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHH
Confidence            577778888888888899999999888774321110 1234443333222    23467888777777777654332  2


Q ss_pred             HHHHhhHHHHHhhcCCCCc----hHHHHHHHHHHHHhhhhch--------------HHHHhhHHHHHHhhcCCCCcc--H
Q 015150          335 ITCSQLLPVVINASKDRVP----NIKFNVAKVLQSLIPIVDQ--------------SVVEKSIRPCLVELSEDPDVD--V  394 (412)
Q Consensus       335 ~~~~~il~~l~~~l~d~~~----~vR~~~~~~l~~l~~~~~~--------------~~~~~~i~~~l~~l~~d~~~~--v  394 (412)
                      .+.+.++|.+....+.+..    .-.....+....+.....+              ..........+....+|+..+  .
T Consensus       193 ~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~~~~  272 (298)
T PF12719_consen  193 RLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKEKEE  272 (298)
T ss_pred             HHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccchHH
Confidence            3555666766665543322    1111122222222221111              122344555666667777766  8


Q ss_pred             HHHHHHHHHHhHH
Q 015150          395 RFFATQALQSKDQ  407 (412)
Q Consensus       395 r~~a~~al~~~~~  407 (412)
                      ++.-.++++.+.-
T Consensus       273 ~k~~~~~L~~L~i  285 (298)
T PF12719_consen  273 RKALCKALSKLEI  285 (298)
T ss_pred             HHHHHHHHhcccc
Confidence            8888888877653

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.91  E-value=0.036  Score=59.06  Aligned_cols=289  Identities=10%  Similarity=0.078  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHHHHhCCC--Ccccch----HHHHHHhcCCChHHHHHHHHHHHHHHHHhh-CHH-----HHHHhhhhhHH
Q 015150           83 RYMVANQLYELCEAVGPE--PTRSDV----VPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPE-----LAIQHILPCVK  150 (412)
Q Consensus        83 R~~~~~~l~~l~~~~~~~--~~~~~l----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~~~~~~~~l~  150 (412)
                      |.-+++-|..++......  ..|..+    -+.+.+.-.+++..++..|+..|..++-.+ ..+     .+.+.++..+.
T Consensus      1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076       1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred             chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence            455555555555443322  234443    444444444556789999999988877543 222     23344555555


Q ss_pred             Hhc-cCCcHHHHHHHHHHHHhcCcccChhHHH--HhhHHHHHHhhcccChHHHHHHHHHHHHHHHh-hc------hhhHH
Q 015150          151 ELS-SDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-IG------IDLLS  220 (412)
Q Consensus       151 ~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~-~~------~~~~~  220 (412)
                      ..+ +..+..||..+++++.++....+.....  +.++..+.....++++.+-..+...+..+... ++      .+.+ 
T Consensus      1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F- 1267 (1780)
T PLN03076       1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF- 1267 (1780)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-
Confidence            433 4567799999999999887654432211  24555555555677777777777777766543 11      1222 


Q ss_pred             hhHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhh-----------------------------------ChhhHHHHHHH
Q 015150          221 QSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL-----------------------------------GVGFFDDKLGA  264 (412)
Q Consensus       221 ~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~-----------------------------------~~~~~~~~l~~  264 (412)
                      ..++..+.++.+.. +..+-..++..+..++..+                                   +.+.....++|
T Consensus      1268 ~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p 1347 (1780)
T PLN03076       1268 TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP 1347 (1780)
T ss_pred             HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence            45556666665433 2334334444333322111                                   01111234566


Q ss_pred             HHHHH---hcCchhHHHHHHHHHHHHHHHHhChhh--------hhhhhHHHHHhhhc----------------------C
Q 015150          265 LCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDW--------AMQHIVPQVLEMIN----------------------N  311 (412)
Q Consensus       265 ~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~~l~~l~~~~~----------------------~  311 (412)
                      ++..+   ..|+..+||..|+..|-.++...|..+        +...++|.+-.+-.                      +
T Consensus      1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e 1427 (1780)
T PLN03076       1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELD 1427 (1780)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence            66554   669999999999999998888877532        23345555433210                      0


Q ss_pred             CchHHHHHHHHHHHHhccccchh-----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150          312 PHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       312 ~~~~~r~~~~~~l~~l~~~~~~~-----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  372 (412)
                      .+....++...++..+...+..-     ...+.++..+..+...++..+-.....++..+....|.
T Consensus      1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076       1428 QDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence            11124677788888777666543     23444555556666667777777777788777665544

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.91  E-value=0.025  Score=54.44  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC
Q 015150           24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG   98 (412)
Q Consensus        24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~   98 (412)
                      ....+...+..++.+++..+|.++..++..++..--|+ .+++++|.+.+++.+.+..--+.++++|..+.....
T Consensus        87 ~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd-~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~  160 (1005)
T KOG2274|consen   87 VKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD-EWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD  160 (1005)
T ss_pred             HHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch-hhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence            34455566666677888889999999999999875454 588999999999998888888899999998887653

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.90  E-value=0.0088  Score=52.13  Aligned_cols=163  Identities=13%  Similarity=0.209  Sum_probs=89.4

Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH--------
Q 015150           69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--------  140 (412)
Q Consensus        69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--------  140 (412)
                      .++....+++++.+|..++++||-.+-. +.+. ..+.++.+...++..+..||..|++++..+....|.+.        
T Consensus        30 ~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~  107 (298)
T PF12719_consen   30 SLILPAVQSSDPAVRELALKCLGLCCLL-DKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND  107 (298)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence            3444666677777788888777766532 2222 23445556665555577778877777777765554331        


Q ss_pred             ---HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC--cccCh-hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh
Q 015150          141 ---AIQHILPCVKELSSDSSQHVRSALATVIMGMA--PILGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  214 (412)
Q Consensus       141 ---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~--~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~  214 (412)
                         ....+...+.+.+.+.++.+|..+++.+.++.  ..+.. ......++-.+.+--..++..+|......+..++..-
T Consensus       108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~  187 (298)
T PF12719_consen  108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS  187 (298)
T ss_pred             ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence               12346666777777778888888888888753  33333 3333333332222222334555544444444443321


Q ss_pred             c--hhhHHhhHHHHHHHHhcC
Q 015150          215 G--IDLLSQSLLPAIVELAED  233 (412)
Q Consensus       215 ~--~~~~~~~~~~~l~~~~~d  233 (412)
                      .  ...+.+.++|.+..+.+.
T Consensus       188 ~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  188 PENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC
Confidence            1  233344556666665443

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.88  E-value=0.001  Score=63.52  Aligned_cols=141  Identities=17%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH---HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch--hh
Q 015150          144 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DL  218 (412)
Q Consensus       144 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~--~~  218 (412)
                      .++|.+.+.+......+|.....++..+....+++..   ...++|.+.+.+.=+|..||..+.+.+..+....+.  +.
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~  946 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE  946 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence            3444444444433333344444444444333333222   134445555554444455554444444444333221  11


Q ss_pred             HHhhHHHHHHHHhcCCC---chHHHHHHHHhhHHHhhhChhh---HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150          219 LSQSLLPAIVELAEDRH---WRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANN  284 (412)
Q Consensus       219 ~~~~~~~~l~~~~~d~~---~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~  284 (412)
                      ....++|.+..+..|.+   -.||..++++++.+.+..+...   +.+.++..+.+.|.|+..-||+.|..+
T Consensus       947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            12334444444444433   2345555555555444332211   233444444444555544455554444

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.82  E-value=0.00075  Score=66.12  Aligned_cols=148  Identities=14%  Similarity=0.162  Sum_probs=110.4

Q ss_pred             ChhHHHHhhHHHHHHhhcc----cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhc-CCCchHHHHHHHHhhHHH
Q 015150          176 GKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA  250 (412)
Q Consensus       176 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~  250 (412)
                      |.......+.|.+...++.    .+|+++.+|.-+|+.+.-. +. .+...-+|.+...++ .+++++|..++-.++-++
T Consensus       912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa-~fces~l~llftimeksp~p~IRsN~VvalgDla  989 (1251)
T KOG0414|consen  912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA  989 (1251)
T ss_pred             ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hH-HHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence            4344456778888888854    4699999999999999754 22 233556788777766 899999999999998888


Q ss_pred             hhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q 015150          251 SQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  329 (412)
Q Consensus       251 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~  329 (412)
                      -.++.  +.+.+-+.+...|.|+++.||+.|+..+..++-+--.+  .+-.++.....+.|++..+|..|=..+..++.
T Consensus       990 v~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK--VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  990 VRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK--VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             hhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH--hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            76643  34457778889999999999999999998877421111  24456666777889999888888766666654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.82  E-value=0.0011  Score=64.09  Aligned_cols=207  Identities=16%  Similarity=0.101  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHhhh---hh-hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccC
Q 015150            5 RRSAATNLGKFAATVEA---AH-LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQD   77 (412)
Q Consensus         5 R~~a~~~l~~~~~~~~~---~~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d   77 (412)
                      |-+|+..|+.+.. +++   +. .---|.|+..++++++-.+.|..-+-+...|...-+.   +..+......+.+.+.+
T Consensus       487 RlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  487 RLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            6777777777765 222   11 1223889999999999888887666666666543211   22222222233333333


Q ss_pred             ---CChHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCC-hHHHHHHHHHHHHHHHHhhCHHHHH---Hhhhh
Q 015150           78 ---KSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPELAI---QHILP  147 (412)
Q Consensus        78 ---~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~  147 (412)
                         -+++-|..++-.|+.++..+.   .......++..+.+.++|+ .+-.|+-++-+|+.+-+......+.   .....
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe  645 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE  645 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence               236889999999999988654   2234567899999999994 7999999999999998877665432   22456


Q ss_pred             hHHHhccCCcHHHHHHHHHHHHhcCcccCh----h--------------HHHHhhHH----HHHHhhcccChHHHHHHHH
Q 015150          148 CVKELSSDSSQHVRSALATVIMGMAPILGK----D--------------ATIEQLLP----IFLSLLKDEFPDVRLNIIS  205 (412)
Q Consensus       148 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~--------------~~~~~l~~----~l~~~l~d~~~~vr~~~~~  205 (412)
                      .+..+++|+.++||.+++-+++.+......    .              ...+.+++    .+..+++|..+-||.....
T Consensus       646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v  725 (1387)
T KOG1517|consen  646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV  725 (1387)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence            667788999999999999999988764211    0              01123333    3455667778888888777


Q ss_pred             HHHHHHH
Q 015150          206 KLDQVNQ  212 (412)
Q Consensus       206 ~l~~i~~  212 (412)
                      ++..++.
T Consensus       726 ~ls~~~~  732 (1387)
T KOG1517|consen  726 ALSHFVV  732 (1387)
T ss_pred             HHHHHHH
Confidence            7776653

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=0.033  Score=52.62  Aligned_cols=133  Identities=14%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHHHhhchhhHHhhHHHHH---HHHhcCCCchHHHHHHHHhhHHHhhhChh------------hHHHH
Q 015150          197 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAI---VELAEDRHWRVRLAIIEYIPLLASQLGVG------------FFDDK  261 (412)
Q Consensus       197 ~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l---~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------------~~~~~  261 (412)
                      .++|+..-.-+..++. ++++.+...+-..+   ...++.++|..-..++..+-.+++.+...            .....
T Consensus       413 ~e~RkkLk~fqdti~~-idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~  491 (980)
T KOG2021|consen  413 EEVRKKLKNFQDTIVV-IDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFL  491 (980)
T ss_pred             HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHH
Confidence            3466654433333333 34444333332222   23345667888787877777777765221            11223


Q ss_pred             HHHHHHH--HhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc------CCchHHHHHHHHHHHHhccccch
Q 015150          262 LGALCMQ--WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       262 l~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~------~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      ..+.++.  .+..++..|.-.-.+.+.+..+-+..+   ..-+|.++..+-      +.+..||..+-..+.++.+.+.+
T Consensus       492 ~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkk  568 (980)
T KOG2021|consen  492 NELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKK  568 (980)
T ss_pred             HHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHH
Confidence            3344332  345566666665555555544433322   234555555433      34566777666666666554433

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.79  E-value=0.005  Score=54.91  Aligned_cols=126  Identities=17%  Similarity=0.227  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc------CCchHHHHHHHHHHHHhccccc---------------
Q 015150          274 VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYLYRMTILQAISLLAPVMG---------------  332 (412)
Q Consensus       274 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~------~~~~~~r~~~~~~l~~l~~~~~---------------  332 (412)
                      ...-|.+|...+..+.+..+... .+.+...+...+.      ..+|+-+.+|+..++.++....               
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            34578888888888888765432 1222222222222      3569999999999999975441               


Q ss_pred             hhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHH
Q 015150          333 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL  402 (412)
Q Consensus       333 ~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al  402 (412)
                      .+++..+++|.+. .-.+..|-+|..|++.+..+...+..+.. ..++|.+..++.+++.-|+..|+.++
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            2356778888887 33456788999999999999988776544 56999999999999999999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.78  E-value=0.0068  Score=58.37  Aligned_cols=166  Identities=17%  Similarity=0.196  Sum_probs=98.9

Q ss_pred             hHHHHHHHHhcC----CCchHHHHHHHHhhHHHhhhCh------hhHHHHHHHHHHHH----hcCchhHHHHHHHHHHHH
Q 015150          222 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQW----LKDKVYSIRDAAANNVKR  287 (412)
Q Consensus       222 ~~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~----l~d~~~~vr~~a~~~l~~  287 (412)
                      .++..+..++++    +.+.+|..++-.++.+......      ......+.+.+...    .++.+.+.+...+++||.
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            455566666654    3567888888888888764321      11223444444443    344556667778888876


Q ss_pred             HHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          288 LAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       288 l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      +..    ......+.|.+. .-.+.+..+|.+++.++..++...+.. ..+.+++.+.+  .+..++||.+|+..+...-
T Consensus       473 ~g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~  544 (574)
T smart00638      473 AGH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVLMETK  544 (574)
T ss_pred             cCC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHHHhcC
Confidence            443    222222333332 112334789999999999887655443 44555555543  3456889999998887664


Q ss_pred             hhhchHHHHhhHHHHH-HhhcCCCCccHHHHHHHHH
Q 015150          368 PIVDQSVVEKSIRPCL-VELSEDPDVDVRFFATQAL  402 (412)
Q Consensus       368 ~~~~~~~~~~~i~~~l-~~l~~d~~~~vr~~a~~al  402 (412)
                      +.       ..++..+ ..+..|++..|+..+...|
T Consensus       545 P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      545 PS-------VALLQRIAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             CC-------HHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence            32       2233333 3356788899988876654

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0044  Score=56.26  Aligned_cols=155  Identities=15%  Similarity=0.038  Sum_probs=102.9

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLL  185 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  185 (412)
                      -..+.+++.|.++-.|...+.+++----..+..    .++..+++. .+|.+..||++++-+++-++-  .    ...++
T Consensus       518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~----D~~~l  587 (926)
T COG5116         518 DDYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--D----DRDLL  587 (926)
T ss_pred             HHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchHHHHHHHHheeeeEe--c----Ccchh
Confidence            346777888999999988877765321112222    233444443 688999999999988887662  1    23455


Q ss_pred             HHHHHhhccc-ChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH--HHHH
Q 015150          186 PIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKL  262 (412)
Q Consensus       186 ~~l~~~l~d~-~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l  262 (412)
                      +...+++.++ ++.||...+-+|+-.+...|.    +..+..+..+..|++.-||++++-.++.+.-+..++.-  ...+
T Consensus       588 v~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I  663 (926)
T COG5116         588 VGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI  663 (926)
T ss_pred             hHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence            6666666554 689999999899888877663    33566677778899999999998888887766654321  1234


Q ss_pred             HHHHHHHhcCchh
Q 015150          263 GALCMQWLKDKVY  275 (412)
Q Consensus       263 ~~~l~~~l~d~~~  275 (412)
                      ...+.+.+.|...
T Consensus       664 ~k~f~~vI~~Khe  676 (926)
T COG5116         664 IKKFNRVIVDKHE  676 (926)
T ss_pred             HHHHHHHHhhhhH
Confidence            4555555656543

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.0033  Score=52.67  Aligned_cols=169  Identities=12%  Similarity=0.116  Sum_probs=89.4

Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH---HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh--
Q 015150          224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--  298 (412)
Q Consensus       224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--  298 (412)
                      +......+.+.+|..+...+..+..++..-. +...+.   ++..+.+-++.....|-.+|+.+++.+...++.....  
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l  168 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL  168 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445566677777777666666665443 222222   3333444566666667777777777777666543221  


Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----H
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----V  374 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~  374 (412)
                      +.++-.|+.-....+.-+|+.+-.+|..+.....+.    .+++.+...++..++.+|..++.+.......+|-.    +
T Consensus       169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~  244 (334)
T KOG2933|consen  169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQ  244 (334)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhH
Confidence            122222222223344567777777777766555544    34444444455666677776666666555554421    2


Q ss_pred             HHhhHHHHHHhhcCCCCccHHHH
Q 015150          375 VEKSIRPCLVELSEDPDVDVRFF  397 (412)
Q Consensus       375 ~~~~i~~~l~~l~~d~~~~vr~~  397 (412)
                      +.....+.+..-+.|.-+.+|..
T Consensus       245 ~~~dl~~a~~~~~~d~Lp~~~~~  267 (334)
T KOG2933|consen  245 GSCDLSRAAQEQGSDKLPELREA  267 (334)
T ss_pred             hHHHHHHHHHhhhcccccccccc
Confidence            22333444444455555444433

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.69  E-value=0.048  Score=51.15  Aligned_cols=141  Identities=11%  Similarity=0.109  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhcC----chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchhH
Q 015150          261 KLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEI  335 (412)
Q Consensus       261 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~  335 (412)
                      .+-|++......    .++.++.+|.-+|.++.- ++.++..+ -+|.+...+. ++++++|..++-.++.+.-.+..  
T Consensus       892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~fc~e-hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~--  967 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFEFCSE-HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT--  967 (1128)
T ss_pred             hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHHHHHH-HHHHHHHHHhhCCCcceeccceeeccccceehhh--
Confidence            345666555544    678888888888887763 44555444 5577776665 89999999999999988765543  


Q ss_pred             HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +.+..-..+...+.|.+..||+.++-++..+.-. |. ......++.+..+++|+|.++...|...+-.++.
T Consensus       968 ~~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq-~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         968 TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQ-LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cc-eeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            4566777888999999999999999888877531 11 1224567888899999999999999988877765

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.00067  Score=61.30  Aligned_cols=155  Identities=15%  Similarity=0.154  Sum_probs=107.5

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhh-ccCCChHHHHHHHHHHHHHHHHhCCCCcccchH
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV  107 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l-~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  107 (412)
                      -.++.+++.|.++..|...+-.++.-.-.-+.    ..++..++.. .+|.+..||++++-+||-++..      ..+++
T Consensus       518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn----~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~------D~~~l  587 (926)
T COG5116         518 DDYINELLYDKDSILRYNGVFSLALAYVGTGN----LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD------DRDLL  587 (926)
T ss_pred             HHHHHHHhcCchHHhhhccHHHHHHHHhcCCc----chhHhhhheeecccCchHHHHHHHHheeeeEec------Ccchh
Confidence            34677889999998998776665544333222    2344445555 7889999999999998877642      23455


Q ss_pred             HHHHHhc-CCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH--HHhh
Q 015150          108 PAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQL  184 (412)
Q Consensus       108 ~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l  184 (412)
                      +...+++ ++.++.||....-+|+-.+...+..    ..+..+..+..|++..||+.++-+.+.+.....++..  ...+
T Consensus       588 v~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I  663 (926)
T COG5116         588 VGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI  663 (926)
T ss_pred             hHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence            5555554 5678999999999999888766655    3456677788999999999999888877654443322  2466


Q ss_pred             HHHHHHhhcccCh
Q 015150          185 LPIFLSLLKDEFP  197 (412)
Q Consensus       185 ~~~l~~~l~d~~~  197 (412)
                      ...|.+++.|...
T Consensus       664 ~k~f~~vI~~Khe  676 (926)
T COG5116         664 IKKFNRVIVDKHE  676 (926)
T ss_pred             HHHHHHHHhhhhH
Confidence            6777777766543

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=97.64  E-value=0.053  Score=50.49  Aligned_cols=391  Identities=13%  Similarity=0.094  Sum_probs=196.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCc-hHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCCh
Q 015150            4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSW   80 (412)
Q Consensus         4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~~   80 (412)
                      .|..+++.+......++.+. ...+......++..+. .+.|..+.+.+....+.-..  ...+..++..+..-..+++-
T Consensus         6 ~R~~a~~~l~~~i~~~~~~~-i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~   84 (464)
T PF11864_consen    6 ERIKAAEELCESIQKYPLSS-IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDF   84 (464)
T ss_pred             HHHHHHHHHHHHHHhCCchH-HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhH
Confidence            47788888888887766533 3334455555676654 45899999999998887543  34555666667666666667


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHH---------------------------HHHHHHHHHHHH
Q 015150           81 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV---------------------------RIAAAGKVTKIC  133 (412)
Q Consensus        81 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v---------------------------r~~a~~~l~~l~  133 (412)
                      ..|..++..|++=++.+  +.+..++.|.+..++..-...+                           -...+..+..+.
T Consensus        85 ~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nvi  162 (464)
T PF11864_consen   85 DLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVI  162 (464)
T ss_pred             HHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHH
Confidence            78888888777655544  2345667777777664322111                           111112222222


Q ss_pred             Hhh---CHHHHHHhhhhhHHHhcc-CCcHHHHHHHHHHHHhcCc--ccChhHHHHhhHHHHHHhhcccChHHHHHHHHHH
Q 015150          134 RIL---NPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAP--ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL  207 (412)
Q Consensus       134 ~~~---~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~--~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l  207 (412)
                      ++-   -++.....++..+..++. ..++..-..+...+..+..  .++.+. ...++..++....-.  .....+.+.+
T Consensus       163 Kfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~~--~l~~~~w~~m  239 (464)
T PF11864_consen  163 KFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNSV--SLCKPSWRTM  239 (464)
T ss_pred             hcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhccc--ccchhHHHHH
Confidence            221   123344445555555542 2333333455555555543  223222 223344444432221  3444444444


Q ss_pred             HHHHHhhchhhHHhhHHHHHHHHhc--C----CCchHHHHHHHHhhHHHhhhChhhH------HHHHHHHHHHHhcCchh
Q 015150          208 DQVNQVIGIDLLSQSLLPAIVELAE--D----RHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLKDKVY  275 (412)
Q Consensus       208 ~~i~~~~~~~~~~~~~~~~l~~~~~--d----~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~  275 (412)
                      ..++..    ......+..+...+.  +    .+..+-++++..++.+.-..|.+..      ...++|.+...++..+.
T Consensus       240 ~nL~~S----~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~  315 (464)
T PF11864_consen  240 RNLLKS----HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP  315 (464)
T ss_pred             HHHHcC----ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCC
Confidence            444422    111334455555552  2    3455666788888877655533221      13488888888887777


Q ss_pred             HHHHHHHHHHHHHH-HHhChhhhh---h---hhHHHHHhhhcC-Cc--------hHHHHHHHHH---HHHhccccchhHH
Q 015150          276 SIRDAAANNVKRLA-EEFGPDWAM---Q---HIVPQVLEMINN-PH--------YLYRMTILQA---ISLLAPVMGSEIT  336 (412)
Q Consensus       276 ~vr~~a~~~l~~l~-~~~~~~~~~---~---~~l~~l~~~~~~-~~--------~~~r~~~~~~---l~~l~~~~~~~~~  336 (412)
                      .|-...+..+..++ +.++.....   +   .+++.+...... +.        ..++......   +..+.+..+-.--
T Consensus       316 ~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~  395 (464)
T PF11864_consen  316 RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGP  395 (464)
T ss_pred             eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCcc
Confidence            77777777777777 555432110   1   122222222211 11        1222222222   2222221110001


Q ss_pred             HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhc-CCCCccHHHHHHHHHHHh
Q 015150          337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS-EDPDVDVRFFATQALQSK  405 (412)
Q Consensus       337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~  405 (412)
                      .+.++..+.+....-.++.....+..-........+++. +.....+.... .+++.+||..|.+++..|
T Consensus       396 ~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~~~Ps~~~W~-~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~  464 (464)
T PF11864_consen  396 KDKLFNFFERVHSYLPDSSALLVLFYEERSCSPSNPDWL-DNLQKLLDRFYNRDRRSEVRIKALDVLEEI  464 (464)
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHhcccCCCChHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHhhC
Confidence            345555555555444333333333111111112222222 33444444443 788889999999888654

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.63  E-value=0.015  Score=56.66  Aligned_cols=219  Identities=15%  Similarity=0.166  Sum_probs=107.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh-CH-HHHHHhhhhhHHHhccC
Q 015150           78 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NP-ELAIQHILPCVKELSSD  155 (412)
Q Consensus        78 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~-~~~~~~~~~~l~~~~~d  155 (412)
                      .....|....++|+..+.        ..-+..+.+++...+-. -..+...+..+.... .+ ....+.+.+++..-...
T Consensus       376 ~~~~~r~~~lDal~~aGT--------~~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~  446 (618)
T PF01347_consen  376 KKEQARKIFLDALPQAGT--------NPAVKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVK  446 (618)
T ss_dssp             --HHHHHHHHHHHHHH-S--------HHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHH
T ss_pred             cHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcccc
Confidence            457788888888877664        33344555555542221 122344454444433 22 23333333333322223


Q ss_pred             CcHHHHHHHHHHHHhcCcccChh------------HHHHhhHHHHHHhhc----ccChHHHHHHHHHHHHHHHhhchhhH
Q 015150          156 SSQHVRSALATVIMGMAPILGKD------------ATIEQLLPIFLSLLK----DEFPDVRLNIISKLDQVNQVIGIDLL  219 (412)
Q Consensus       156 ~~~~vr~~~~~~l~~l~~~~~~~------------~~~~~l~~~l~~~l~----d~~~~vr~~~~~~l~~i~~~~~~~~~  219 (412)
                      .++.++.+++-+++.++...-..            ...+.+++.+...+.    ..+.+.+..++++|+.++.       
T Consensus       447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------  519 (618)
T PF01347_consen  447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------  519 (618)
T ss_dssp             T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred             CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------
Confidence            56788888888888776433111            122344455444443    4456777778888887753       


Q ss_pred             HhhHHHHHHHHhcCC---CchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 015150          220 SQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW  296 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  296 (412)
                       +..++.+..++.+.   ...+|.+++.++..++... +....+.++|++.+  ...+.+||.+|+..|-..-   ..  
T Consensus       520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~~~---P~--  590 (618)
T PF01347_consen  520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMN--TTEDPEVRIAAYLILMRCN---PS--  590 (618)
T ss_dssp             -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHT--------
T ss_pred             -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcC---CC--
Confidence             23556666666555   5678888888888775443 22333444444433  1245668888876654321   11  


Q ss_pred             hhhhhHHHHHhhh-cCCchHHHHHHHHH
Q 015150          297 AMQHIVPQVLEMI-NNPHYLYRMTILQA  323 (412)
Q Consensus       297 ~~~~~l~~l~~~~-~~~~~~~r~~~~~~  323 (412)
                        ...+..+...+ .+++.+|+......
T Consensus       591 --~~~l~~i~~~l~~E~~~QV~sfv~S~  616 (618)
T PF01347_consen  591 --PSVLQRIAQSLWNEPSNQVASFVYSH  616 (618)
T ss_dssp             --HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhhCchHHHHHHHHHh
Confidence              12333333333 45666666554443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.097  Score=49.89  Aligned_cols=255  Identities=15%  Similarity=0.168  Sum_probs=135.5

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH-----HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh-
Q 015150          104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-  177 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-  177 (412)
                      ++.+..+...++.-+-.||..+++.+..+....+.+.-     .+.-+..++.++.|.-+.+|..++-.+..+...-+. 
T Consensus       121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I  200 (970)
T KOG0946|consen  121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI  200 (970)
T ss_pred             chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH
Confidence            45667777777777888888888888888877766521     222445566677788888888888877777654322 


Q ss_pred             --hHHHHhhHHHHHHhhccc----ChHHHHHHHHHHHHHHHhhch--hhH-HhhHHHHHHHHh-----cCC---CchHHH
Q 015150          178 --DATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGI--DLL-SQSLLPAIVELA-----EDR---HWRVRL  240 (412)
Q Consensus       178 --~~~~~~l~~~l~~~l~d~----~~~vr~~~~~~l~~i~~~~~~--~~~-~~~~~~~l~~~~-----~d~---~~~vr~  240 (412)
                        -...+.++..+.+++..+    ..-|...++..+..+.+.-..  ..+ ....+|.+.+++     .|.   .|...+
T Consensus       201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qr  280 (970)
T KOG0946|consen  201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQR  280 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHH
Confidence              112234444444444432    234555566666555544221  111 233456655443     232   454432


Q ss_pred             -HHH-HHhhHHHhhhChh------------hHHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHhC--hhhh-----
Q 015150          241 -AII-EYIPLLASQLGVG------------FFDDKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFG--PDWA-----  297 (412)
Q Consensus       241 -~~~-~~l~~l~~~~~~~------------~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~--~~~~-----  297 (412)
                       ..+ .++..+....++.            ....+++..+...+..+  ..+|+..++.+++.++....  .+.|     
T Consensus       281 v~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~  360 (970)
T KOG0946|consen  281 VQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTA  360 (970)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccC
Confidence             222 2222222211110            11233455555544443  56699999999988886432  1112     


Q ss_pred             ------hhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCc-hHHHHHH
Q 015150          298 ------MQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP-NIKFNVA  360 (412)
Q Consensus       298 ------~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~-~vR~~~~  360 (412)
                            +..+.-.++.+++.. .+..|.++..++..+.-  ....-...++..++....+... ++....+
T Consensus       361 p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~--dN~~gq~~~l~tllp~~~nst~Nsl~ag~l  429 (970)
T KOG0946|consen  361 PSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY--DNDDGQRKFLKTLLPSSTNSTSNSLSAGQL  429 (970)
T ss_pred             CCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh--cchhhHHHHHHHHhhhhccccccchhhhhH
Confidence                  223444555555554 37899999999887752  2222233444444444444333 4443333

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.0047  Score=51.77  Aligned_cols=172  Identities=15%  Similarity=0.138  Sum_probs=117.2

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHH
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE  182 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  182 (412)
                      ..+......+.+.+|+..--++..+..++.+-.+.  ...+.++..+.+-+++....|-.++|-+++.++...+..... 
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-  166 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-  166 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34555666778889999999999998888766543  234446666667778888888889999999988877665433 


Q ss_pred             hhHHHHHHhh---cccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh--
Q 015150          183 QLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--  257 (412)
Q Consensus       183 ~l~~~l~~~l---~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--  257 (412)
                      .+-..+..++   .+++.-||..+-++|..+.....+...    ++.+.......++++|..++.++......+|-..  
T Consensus       167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~----L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~  242 (334)
T KOG2933|consen  167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKL----LRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL  242 (334)
T ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHH----HHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence            3333333333   345678999999999999988776554    4555555778889999999888877776665211  


Q ss_pred             --HHHHHHHHHHHHhcCchhHHHHHH
Q 015150          258 --FDDKLGALCMQWLKDKVYSIRDAA  281 (412)
Q Consensus       258 --~~~~l~~~l~~~l~d~~~~vr~~a  281 (412)
                        +...+.+..-+-+.|.-+.+|++|
T Consensus       243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a  268 (334)
T KOG2933|consen  243 LQGSCDLSRAAQEQGSDKLPELREAA  268 (334)
T ss_pred             hHhHHHHHHHHHhhhcccccccccch
Confidence              122334444444556655555444

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.2  Score=51.67  Aligned_cols=141  Identities=13%  Similarity=0.188  Sum_probs=91.4

Q ss_pred             hcCCCchHHHHHHHHhhHHHhh--hC-hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHh
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE  307 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~--~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~  307 (412)
                      ..+..|++|.+.++.+..+.-.  ++ .+.-.+.+...+.+.+.|....||+.|+.++..+...-...... ........
T Consensus      1536 ~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~-~k~d~~~~ 1614 (1710)
T KOG1851|consen 1536 ADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS-DKRDTTSN 1614 (1710)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch-Hhhhhhhh
Confidence            3457899999998888776533  23 33345678889999999999999999999999988643222111 11222222


Q ss_pred             hhc--CCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150          308 MIN--NPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  373 (412)
Q Consensus       308 ~~~--~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  373 (412)
                      ...  ..+....-+++..++++.-.++-.  .+..+.+..+....+++ ..++.++-+++..+.....++
T Consensus      1615 ~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1615 ILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred             hhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhhh
Confidence            222  223445667888888887666543  13333444444444555 678999999999998766654

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.21  Score=52.44  Aligned_cols=287  Identities=18%  Similarity=0.153  Sum_probs=173.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhcc----CCchHHHHHHHH--hHHHHhhcc---------CchhhhhhhH
Q 015150            4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQ----DDQDSVRLLAVE--GCGALGKLL---------EPQDCVAHIL   68 (412)
Q Consensus         4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~----~~~~~~r~~a~~--~l~~i~~~~---------~~~~~~~~l~   68 (412)
                      +-..+.+.++.+....+..+ .-.++..+.....    -....|+..+..  ++....+++         +++.+...-+
T Consensus       800 ~Idta~~lfg~vfp~v~~k~-~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~  878 (2067)
T KOG1822|consen  800 LIDTAVSLFGSVFPHVNNKI-RLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSAL  878 (2067)
T ss_pred             HHHHHHHHHHHhccCccHHH-HHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence            34556666777666655432 3333333333322    223344444433  444444433         3345555566


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH---HHHHHh
Q 015150           69 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP---ELAIQH  144 (412)
Q Consensus        69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~~~~~~  144 (412)
                      .++...+..+++..|-.+.++++.++...+...+...+...++.-+.+ .++..|..-..+++-+-++.+.   ......
T Consensus       879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t  958 (2067)
T KOG1822|consen  879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT  958 (2067)
T ss_pred             HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence            677777888999999999999999999888877766666666655544 4566677777888888887654   333334


Q ss_pred             hhhhHHHhccCCcH-HHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHh-hccc--ChHHHHHHHHHHH------HHHH
Q 015150          145 ILPCVKELSSDSSQ-HVRSALATVIMGMAPILGKDA--TIEQLLPIFLSL-LKDE--FPDVRLNIISKLD------QVNQ  212 (412)
Q Consensus       145 ~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~-l~d~--~~~vr~~~~~~l~------~i~~  212 (412)
                      -+..+..+.+|+.. .|+..+..++..+....|+-.  ..+..+.....+ +.++  ..+++...-+.+.      .+..
T Consensus       959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alit 1038 (2067)
T KOG1822|consen  959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALIT 1038 (2067)
T ss_pred             HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHH
Confidence            45577777888665 999999888887776554422  122223333333 3332  2344444333333      3333


Q ss_pred             hhchh----hH-------HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHH
Q 015150          213 VIGID----LL-------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAA  281 (412)
Q Consensus       213 ~~~~~----~~-------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  281 (412)
                      .+|++    ..       ....+-...-++..+++-+..++++++..+.-..+...-.+.+++-+..++.....-.|.++
T Consensus      1039 tlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~ 1118 (2067)
T KOG1822|consen 1039 TLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRAS 1118 (2067)
T ss_pred             hcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhH
Confidence            33322    11       11112222223456688899999999888876666655567788888888888777778888


Q ss_pred             HHHHHHHHHH
Q 015150          282 ANNVKRLAEE  291 (412)
Q Consensus       282 ~~~l~~l~~~  291 (412)
                      +.++..+...
T Consensus      1119 ~~clrql~~R 1128 (2067)
T KOG1822|consen 1119 FSCLRQLVQR 1128 (2067)
T ss_pred             HhhhhHHhHH
Confidence            8887776653

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.33  E-value=0.073  Score=51.37  Aligned_cols=165  Identities=13%  Similarity=0.051  Sum_probs=93.9

Q ss_pred             hhHHHHHHhhcc----cChHHHHHHHHHHHHHHHhhch------hhHHhhHHHHHHH----HhcCCCchHHHHHHHHhhH
Q 015150          183 QLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVE----LAEDRHWRVRLAIIEYIPL  248 (412)
Q Consensus       183 ~l~~~l~~~l~d----~~~~vr~~~~~~l~~i~~~~~~------~~~~~~~~~~l~~----~~~d~~~~vr~~~~~~l~~  248 (412)
                      .++..+..++++    .++.++..++-+++.+......      ..+.+.+++.+.+    ..++.+...+..++++|+.
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            445555566554    3578899999888888764321      1122344554444    3445566667777777765


Q ss_pred             HHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC--CchHHHHHHHHHHHH
Q 015150          249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISL  326 (412)
Q Consensus       249 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~--~~~~~r~~~~~~l~~  326 (412)
                      +...    .....+.|.+. .-.+....+|.+|+.+|..+..... +    .+.+.++..+.+  .+..+|.+|+..+-.
T Consensus       473 ~g~~----~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p-~----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~  542 (574)
T smart00638      473 AGHP----SSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP-R----KVQEVLLPIYLNRAEPPEVRMAAVLVLME  542 (574)
T ss_pred             cCCh----hHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc-h----HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence            5432    22233333332 1123356799999999998876442 2    344444554444  346799999988776


Q ss_pred             hccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150          327 LAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL  363 (412)
Q Consensus       327 l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l  363 (412)
                      .-   +.......+...+   -.|++..|+..+...|
T Consensus       543 t~---P~~~~l~~ia~~l---~~E~~~QV~sfv~S~l  573 (574)
T smart00638      543 TK---PSVALLQRIAELL---NKEPNLQVASFVYSHI  573 (574)
T ss_pred             cC---CCHHHHHHHHHHH---hhcCcHHHHHHhHHhh
Confidence            42   2222223332222   3577888887665543

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.18  Score=47.90  Aligned_cols=308  Identities=10%  Similarity=0.046  Sum_probs=169.1

Q ss_pred             ccchHHHHHHhcC-----C---ChHHHHHHHHHHHHHHHHhhCHH-----HHHHhhhhhHHHhccCCcHHHHHHHHHHHH
Q 015150          103 RSDVVPAYVRLLR-----D---NEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVKELSSDSSQHVRSALATVIM  169 (412)
Q Consensus       103 ~~~l~~~l~~~l~-----d---~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~  169 (412)
                      .+.+++.+...++     +   .++.-...|+..+..+...+...     .....+++.+...++++.-..|..+|+.+.
T Consensus       406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is  485 (970)
T COG5656         406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence            4567777777662     2   23455667777777776644332     223336677777778889999999999999


Q ss_pred             hcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch-hhHHhhHHHHHHH---HhcCCCchHHHHHHHH
Q 015150          170 GMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVE---LAEDRHWRVRLAIIEY  245 (412)
Q Consensus       170 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~-~~~~~~~~~~l~~---~~~d~~~~vr~~~~~~  245 (412)
                      .+...+........+.....+++++++-.|+..|+-++..+...... +.+..++-+.+.+   +.++-+-.+-..+.+.
T Consensus       486 ~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~  565 (970)
T COG5656         486 TIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMES  565 (970)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHH
Confidence            99766776666667777888889998889999999999888766432 3333344344433   4444333333333222


Q ss_pred             h-hHHHhhh---Chhh---HHHHHHHHHHHHhcCc---h---hHHHHHHH---HHHHHHHHHhChh-----hhhhhhHHH
Q 015150          246 I-PLLASQL---GVGF---FDDKLGALCMQWLKDK---V---YSIRDAAA---NNVKRLAEEFGPD-----WAMQHIVPQ  304 (412)
Q Consensus       246 l-~~l~~~~---~~~~---~~~~l~~~l~~~l~d~---~---~~vr~~a~---~~l~~l~~~~~~~-----~~~~~~l~~  304 (412)
                      + +.++..+   +++.   +..+++.+...++..+   .   .+=..+|.   +++..++-.+.+.     ..-..+.|.
T Consensus       566 fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypv  645 (970)
T COG5656         566 FVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPV  645 (970)
T ss_pred             HHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            1 1222222   2221   1122233333333322   1   11122233   3333333333322     122345555


Q ss_pred             HHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCc-hHHHHHHHHHHHHhhhhc-----hHHHH
Q 015150          305 VLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVD-----QSVVE  376 (412)
Q Consensus       305 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~-~vR~~~~~~l~~l~~~~~-----~~~~~  376 (412)
                      +.-.+++.....-..+++.+....- +..+  +..-.++..+.+++.|+.. ..-..+..++..+...-+     .+.+.
T Consensus       646 i~Filkn~i~dfy~Ea~dildg~tf-~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~  724 (970)
T COG5656         646 ISFILKNEISDFYQEALDILDGYTF-MSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYG  724 (970)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhhhhH-HHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchh
Confidence            5555666555555566666554331 1111  3444566677777777764 444566677777753221     22444


Q ss_pred             hhHHHHHHhhcCCCCc--cHHHHHHHHHHHhHHhhhC
Q 015150          377 KSIRPCLVELSEDPDV--DVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       377 ~~i~~~l~~l~~d~~~--~vr~~a~~al~~~~~~~~~  411 (412)
                      +-+.....+.++..+.  +=+..+++....++-++++
T Consensus       725 ~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd  761 (970)
T COG5656         725 SICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRD  761 (970)
T ss_pred             HHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccc
Confidence            5566666665544444  5556666666666655543

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=97.23  E-value=0.067  Score=49.15  Aligned_cols=76  Identities=17%  Similarity=0.225  Sum_probs=56.7

Q ss_pred             HHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHHhcCCC
Q 015150           42 SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVRLLRDN  117 (412)
Q Consensus        42 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~  117 (412)
                      ..|..|+++||.+..+++.+......-+.+..++++++..-|..++-.+.+.+.........   +.+.+.+...++++
T Consensus       102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~  180 (441)
T PF12054_consen  102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP  180 (441)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence            45788999999999998766544445557888899988888999999999998876644332   35667777777744

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=97.19  E-value=0.0053  Score=42.38  Aligned_cols=80  Identities=18%  Similarity=0.097  Sum_probs=48.8

Q ss_pred             HHHhccCCchHHHHHHHHhHHHHhhccC-chhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 015150           32 FEELTQDDQDSVRLLAVEGCGALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY  110 (412)
Q Consensus        32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l  110 (412)
                      ....++|+.+.+|..++..|..+.+.-+ .....+.++.+++..++|+++-|=.+++++|..++...+     ..++|.+
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~~L   82 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLPIL   82 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHHHH
Confidence            3444566666677777777777666655 434455566666777777777777777777777666432     3345555


Q ss_pred             HHhcCC
Q 015150          111 VRLLRD  116 (412)
Q Consensus       111 ~~~l~d  116 (412)
                      .+...|
T Consensus        83 ~~~y~~   88 (92)
T PF10363_consen   83 LDEYAD   88 (92)
T ss_pred             HHHHhC
Confidence            554443

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=97.19  E-value=0.011  Score=58.78  Aligned_cols=172  Identities=11%  Similarity=0.035  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh--ChhhHHHHHHHHHHHHhcCch
Q 015150          197 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKV  274 (412)
Q Consensus       197 ~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~  274 (412)
                      ..||.+++++|+.+........+ ...+..+.+++..++|++|+..+..+.......  +-..+...+++.+...+.|.+
T Consensus       143 apVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~  221 (1549)
T KOG0392|consen  143 APVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSD  221 (1549)
T ss_pred             hhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            57999999999999998776655 677788888888899999998776665544422  112344567888889999999


Q ss_pred             hHHHHHHHHHHHHHHHHhChh------hhhhhhHHHHHhhhc--CCchHHHHHHHHHHHHh-ccccchh-HHHHhhHHHH
Q 015150          275 YSIRDAAANNVKRLAEEFGPD------WAMQHIVPQVLEMIN--NPHYLYRMTILQAISLL-APVMGSE-ITCSQLLPVV  344 (412)
Q Consensus       275 ~~vr~~a~~~l~~l~~~~~~~------~~~~~~l~~l~~~~~--~~~~~~r~~~~~~l~~l-~~~~~~~-~~~~~il~~l  344 (412)
                      .+||..|+..+.......-..      .+...+...+.++..  .....++......+... ...+... .....+.|.+
T Consensus       222 ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~  301 (1549)
T KOG0392|consen  222 DDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRL  301 (1549)
T ss_pred             hHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhh
Confidence            999999999888777655111      111112222222111  11122222222111111 0001111 1123456666


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHhhh
Q 015150          345 INASKDRVPNIKFNVAKVLQSLIPI  369 (412)
Q Consensus       345 ~~~l~d~~~~vR~~~~~~l~~l~~~  369 (412)
                      +.++.+....+|.+++.++..+.+.
T Consensus       302 ~p~l~~~i~sv~~a~l~~l~~lle~  326 (1549)
T KOG0392|consen  302 WPFLRHTISSVRRAALETLAMLLEA  326 (1549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6667777778999988888877543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=97.17  E-value=0.0038  Score=43.07  Aligned_cols=84  Identities=19%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhC-CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG-PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI  145 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  145 (412)
                      .+...+..++|+.+-+|..++..|.++.+.-. .....+.++..+...++|+++.|=-.|++++..++...+.+     +
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-----v   78 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-----V   78 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----H
Confidence            34556677788888999999999999988766 44455678888889999999999999999999998876554     4


Q ss_pred             hhhHHHhccC
Q 015150          146 LPCVKELSSD  155 (412)
Q Consensus       146 ~~~l~~~~~d  155 (412)
                      +|.+.+...|
T Consensus        79 l~~L~~~y~~   88 (92)
T PF10363_consen   79 LPILLDEYAD   88 (92)
T ss_pred             HHHHHHHHhC
Confidence            4555554433

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=97.13  E-value=0.0036  Score=48.60  Aligned_cols=138  Identities=11%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             HhhHHHHHHHHhcC-CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHHh-
Q 015150          220 SQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-----DKVYSIRDAAANNVKRLAEEF-  292 (412)
Q Consensus       220 ~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~-  292 (412)
                      .+.+++.+..+++. .+|.+|.++++.+|.++..= +-     ..........     +.+........     ..... 
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD-P~-----~~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~   76 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALD-PY-----KHKSIQKSLDSKSSENSNDESTDISL-----PMMGIS   76 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC-cH-----HHhcccccCCccccccccccchhhHH-----hhccCC
Confidence            35667777766654 45888888888877665321 11     1111111111     11111111111     11111 


Q ss_pred             --ChhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          293 --GPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       293 --~~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                        ..+++....+..++..++|++ ...+.++++++..+.+..|..  .|.+.++|.+++.++...++.|...+.-|+.+.
T Consensus        77 ~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   77 PSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence              234445566777777888776 334456677766666555543  578888888888887766677777777777665


Q ss_pred             h
Q 015150          368 P  368 (412)
Q Consensus       368 ~  368 (412)
                      .
T Consensus       157 ~  157 (160)
T PF11865_consen  157 S  157 (160)
T ss_pred             H
Confidence            4

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.10  E-value=0.12  Score=51.55  Aligned_cols=231  Identities=15%  Similarity=0.123  Sum_probs=134.6

Q ss_pred             hhHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc
Q 015150            3 MVRRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ   76 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~   76 (412)
                      .+|...+..++.++....-      ....+.++..+..+..++.-.+|.-|.-+...+-..+         .....++.+
T Consensus       170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~L---------v~va~~Ls~  240 (1048)
T KOG2011|consen  170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTAL---------VSVALNLSS  240 (1048)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence            3567777778877775432      3355667788888888888788887655544444332         111112211


Q ss_pred             -------------CCChHHH--HHHHHHHHHHHHHhCCCCcccchHHHHHH-----hcCCChHHHHHHHHHHHHHHHHhh
Q 015150           77 -------------DKSWRVR--YMVANQLYELCEAVGPEPTRSDVVPAYVR-----LLRDNEAEVRIAAAGKVTKICRIL  136 (412)
Q Consensus        77 -------------d~~~~vR--~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~a~~~l~~l~~~~  136 (412)
                                   .+...-|  ...+........  +.......++..+..     ...|-.+.+|..|++.|+.+.+.+
T Consensus       241 ~~~~tskQleaEr~k~r~~rarle~Ll~~r~etq--e~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~y  318 (1048)
T KOG2011|consen  241 HNDKTSKQLEAERNKSRGNRARLESLLMLRKETQ--EQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSY  318 (1048)
T ss_pred             hhHHHHHHHHHHhcccccchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhc
Confidence                         1112222  222222111111  110111223333333     236889999999999999999998


Q ss_pred             CHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc---cC-hhHHHHhhHHHHHHhh-cccChHHHHHHHHHHHHHH
Q 015150          137 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI---LG-KDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVN  211 (412)
Q Consensus       137 ~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~---~~-~~~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~i~  211 (412)
                      +.-......+.++--.++|.+..||..++.++..+...   .+ -+.+.+.+-..+.++. .|-+..||...+..+....
T Consensus       319 P~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~  398 (1048)
T KOG2011|consen  319 PEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS  398 (1048)
T ss_pred             cHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh
Confidence            88766666777788889999999999999999988765   11 1223344444555555 5667778866554333221


Q ss_pred             HhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhh
Q 015150          212 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  247 (412)
Q Consensus       212 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~  247 (412)
                      .   ...+...=+..+..++-|.+++++.++...+.
T Consensus       399 ~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~  431 (1048)
T KOG2011|consen  399 S---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY  431 (1048)
T ss_pred             c---ccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence            1   11111222334455667778888877766543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.06  E-value=0.23  Score=45.11  Aligned_cols=171  Identities=10%  Similarity=0.018  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHHHHHHhhh--hhhHH------HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHH
Q 015150            3 MVRRSAATNLGKFAATVEA--AHLKS------EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVI   71 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~--~~~~~------~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l   71 (412)
                      .+.+++...+..+....+.  +.+.+      .....+..+++.++..+...++..+..+...-+.   ......+.+.+
T Consensus        69 d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l  148 (429)
T cd00256          69 DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWL  148 (429)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence            4555666666666654332  11111      1122222355556667788888888887754222   11223344455


Q ss_pred             HhhccCC-ChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCC--hHHHHHHHHHHHHHHHHhhC--HHHHHHh
Q 015150           72 VNFSQDK-SWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILN--PELAIQH  144 (412)
Q Consensus        72 ~~l~~d~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~--~~~~~~~  144 (412)
                      ...+..+ +......++.++..+...-.-.  ......++.+...+...  +.+....++.++--+.-.-.  +......
T Consensus       149 ~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~  228 (429)
T cd00256         149 KEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLS  228 (429)
T ss_pred             HHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcccc
Confidence            5554432 3556667777777765421100  01122455555555432  34555656555544321111  1111234


Q ss_pred             hhhhHHHhccCC-cHHHHHHHHHHHHhcCc
Q 015150          145 ILPCVKELSSDS-SQHVRSALATVIMGMAP  173 (412)
Q Consensus       145 ~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~  173 (412)
                      ++|.+.+.+++. -+.|-+.++.++-++..
T Consensus       229 ~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         229 LIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            777777777542 33444455556666554

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.99  E-value=0.16  Score=42.37  Aligned_cols=187  Identities=14%  Similarity=0.188  Sum_probs=112.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHh--------
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN--------   73 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~--------   73 (412)
                      |.......+.+..++..-.  ...+.++..+..+.+.+....+..+.+.+..+...-+.-  .+.+.+.+..        
T Consensus        15 ~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~~~r~~~~   90 (234)
T PF12530_consen   15 PELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLLILRIPSS   90 (234)
T ss_pred             hHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHHhhcccc
Confidence            4455566666666665321  344556667777777766666656666666665543221  1333333333        


Q ss_pred             -hccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc-CCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHH
Q 015150           74 -FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE  151 (412)
Q Consensus        74 -l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  151 (412)
                       .-.+..+....+.+..+..++...+.  ...++++.+..++ ++.++.++..+++++..+++.---+ +. ..+..+.+
T Consensus        91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-~~-s~w~vl~~  166 (234)
T PF12530_consen   91 FSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-FY-SAWKVLQK  166 (234)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc-HH-HHHHHHHH
Confidence             12345677777777888888887666  5678999999999 7889999999999999998532221 11 12233332


Q ss_pred             -hccCCcHHHHHHHHHHHHhcCccc-Ch---hHHHHhhHHHHHHhhcccC
Q 015150          152 -LSSDSSQHVRSALATVIMGMAPIL-GK---DATIEQLLPIFLSLLKDEF  196 (412)
Q Consensus       152 -~~~d~~~~vr~~~~~~l~~l~~~~-~~---~~~~~~l~~~l~~~l~d~~  196 (412)
                       +-.+..+.|-...++.+.-+...- ..   +.....++..+.++....+
T Consensus       167 ~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  167 KLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             hcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence             345667777776666665443221 11   2233566677777666544

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.99  E-value=0.035  Score=43.83  Aligned_cols=125  Identities=19%  Similarity=0.169  Sum_probs=67.8

Q ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150          266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  344 (412)
Q Consensus       266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l  344 (412)
                      +-..+.|+++.||.+|+..+..+.+.. ..     ++..-.+.-.. .++.   ..-..++.+         ...+-..+
T Consensus        45 lt~il~Dp~~kvR~aA~~~l~~lL~gs-k~-----~L~~Ae~~~~~~~sFt---slS~tLa~~---------i~~lH~~L  106 (182)
T PF13251_consen   45 LTCILKDPSPKVRAAAASALAALLEGS-KP-----FLAQAEESKGPSGSFT---SLSSTLASM---------IMELHRGL  106 (182)
T ss_pred             hHHHHcCCchhHHHHHHHHHHHHHHcc-HH-----HHHHHHhcCCCCCCcc---cHHHHHHHH---------HHHHHHHH
Confidence            344578999999999999999988753 11     11111111111 1110   000111111         11222222


Q ss_pred             Hhhc-CCCCchHHHHHHHHHHHHhhhhc----hHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          345 INAS-KDRVPNIKFNVAKVLQSLIPIVD----QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       345 ~~~l-~d~~~~vR~~~~~~l~~l~~~~~----~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      +..+ .+.+..+-...++++..+.+...    +..+...++..+..+..+.|.+||..+..+++.+...
T Consensus       107 l~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  107 LLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            2222 34566666777777777755422    1234556667777777778888888888888777654

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.94  E-value=0.021  Score=44.76  Aligned_cols=90  Identities=19%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh---hhhhHHHHHhhhcCCchHHHHHHHHHHHHh---ccccc
Q 015150          259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLL---APVMG  332 (412)
Q Consensus       259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l---~~~~~  332 (412)
                      .+.++|++...+.+....-|..|.+.+.++++.-+.+.+   ..++++.+...++.++..+..+++.++..+   ++..|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            466888888888888888888888888888877333322   345666677777778888888888888888   56666


Q ss_pred             hh--HHHHhhHHHHHhhc
Q 015150          333 SE--ITCSQLLPVVINAS  348 (412)
Q Consensus       333 ~~--~~~~~il~~l~~~l  348 (412)
                      ..  ++.+.++|.+--+.
T Consensus       116 ~aLvPyyrqLLp~ln~f~  133 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNLFK  133 (183)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            54  46666666655433

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.94  E-value=0.038  Score=43.30  Aligned_cols=75  Identities=15%  Similarity=0.064  Sum_probs=58.0

Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHH---HHHhC
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRL---AEEFG  293 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l---~~~~~  293 (412)
                      .+.++|.+.+-+.+....-|..+.+.+..+....+.+..   .+++++.+-..|+..+++|...++.+|..+   ...+|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            467888888888888888888888888888888444443   356666777888999999999999999998   44445


Q ss_pred             h
Q 015150          294 P  294 (412)
Q Consensus       294 ~  294 (412)
                      +
T Consensus       116 ~  116 (183)
T PF10274_consen  116 E  116 (183)
T ss_pred             H
Confidence            4

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.12  Score=44.81  Aligned_cols=174  Identities=13%  Similarity=0.036  Sum_probs=96.8

Q ss_pred             CCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--hhh-hhhhHHHHHhh
Q 015150          234 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWA-MQHIVPQVLEM  308 (412)
Q Consensus       234 ~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~~l~~l~~~  308 (412)
                      .+.+-|..+...+..++..+....  ..-..++.++.++++.+..+|..|+..++.+.++...  +.+ -...++.|+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            345566667777777766664321  1112233444488888888888888888888876532  111 12344555554


Q ss_pred             hc-CCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCC--CCchHHHHHHHHHHHHhhhhch--HHHHhhHH
Q 015150          309 IN-NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIR  380 (412)
Q Consensus       309 ~~-~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~--~~~~~~i~  380 (412)
                      +. +.+-.+|..++.+++.+.....+.   +..-.=...+...+++  .+...+..++..++.+.+.-..  +......+
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            44 444667888888888887555432   1111223345555555  4555667777777777654322  22223333


Q ss_pred             HHH-HhhcCCCCccHHHHHHHHHHHhHH
Q 015150          381 PCL-VELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       381 ~~l-~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +.. ..+..--+.+++.++..++-+...
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            322 224444566677777666655443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.43  Score=45.84  Aligned_cols=223  Identities=14%  Similarity=0.208  Sum_probs=133.4

Q ss_pred             HhhHHHHHHhhc------------ccChHHHHHHHHH-HHHH----HHhhchhh-HHhhHHHHHHHHhcCCCc-hHHHHH
Q 015150          182 EQLLPIFLSLLK------------DEFPDVRLNIISK-LDQV----NQVIGIDL-LSQSLLPAIVELAEDRHW-RVRLAI  242 (412)
Q Consensus       182 ~~l~~~l~~~l~------------d~~~~vr~~~~~~-l~~i----~~~~~~~~-~~~~~~~~l~~~~~d~~~-~vr~~~  242 (412)
                      +-++|.+.+++.            |-+.-+++.|+.+ .+..    ...++.+. +.+.++|-+.  ....+. -+|+-+
T Consensus       430 qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~--~~~~~~RiiRRRV  507 (978)
T KOG1993|consen  430 QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELA--NDHGNSRIIRRRV  507 (978)
T ss_pred             HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh--hcccchhHHHHHH
Confidence            456777777662            2223455555543 2222    22233332 3344555555  122233 457788


Q ss_pred             HHHhhHHHhhhChhhHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhC--hhhhh---hhhHHHHHhhhcC-CchH
Q 015150          243 IEYIPLLASQLGVGFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFG--PDWAM---QHIVPQVLEMINN-PHYL  315 (412)
Q Consensus       243 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~--~~~~~---~~~l~~l~~~~~~-~~~~  315 (412)
                      +..++..+..--+....+.+...+.+++.|. +..||-+++.++...++...  ++.+.   +.+...+..++.. ....
T Consensus       508 a~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~D  587 (978)
T KOG1993|consen  508 AWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECD  587 (978)
T ss_pred             HHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhh
Confidence            8888888876555566677778888999998 67799999999999887542  33222   2222233333332 3356


Q ss_pred             HHHHHHHHHHHhccccchh--HHHH---hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcC
Q 015150          316 YRMTILQAISLLAPVMGSE--ITCS---QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSE  388 (412)
Q Consensus       316 ~r~~~~~~l~~l~~~~~~~--~~~~---~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~  388 (412)
                      .|...+..++.+....+.-  ++..   .++|.+.+.- .+++-.|.+.+.++.++...+|..  .+.+.++|.+....+
T Consensus       588 tk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D  666 (978)
T KOG1993|consen  588 TKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTD  666 (978)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcC
Confidence            7778888888777655542  2222   3445555433 356789999999999999998875  345666676665544


Q ss_pred             CCCccHHHHHHHHHHHhHH
Q 015150          389 DPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       389 d~~~~vr~~a~~al~~~~~  407 (412)
                      -..++-......++.-+..
T Consensus       667 ~~sP~hv~L~EDgmeLW~~  685 (978)
T KOG1993|consen  667 PSSPEHVYLLEDGMELWLT  685 (978)
T ss_pred             CCCCceeehhhhHHHHHHH
Confidence            3444555555555554443

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.90  E-value=0.3  Score=43.82  Aligned_cols=125  Identities=17%  Similarity=0.200  Sum_probs=85.7

Q ss_pred             chHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHHhC---------------h
Q 015150          236 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK------DKVYSIRDAAANNVKRLAEEFG---------------P  294 (412)
Q Consensus       236 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~---------------~  294 (412)
                      ...|.+++..+..+++..+... .+.+...+..+++      ..+|.-+.+|+..++.+.....               .
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            4568888899988888765542 2223334444443      4567788888888888775431               1


Q ss_pred             hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150          295 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL  363 (412)
Q Consensus       295 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l  363 (412)
                      +++...++|.+. .-.+..+.+|..++..+..+...++++ ....++|.+.++|++++.-|+.-|+.++
T Consensus       304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            345566778777 333455789999999999999888876 5667999999999999999998887664

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.89  E-value=0.015  Score=45.79  Aligned_cols=56  Identities=20%  Similarity=0.159  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhh---hhHHHHHHH------------HHHhccCCchHHHHHHHHhHHHHhhcc
Q 015150            3 MVRRSAATNLGKFAATVEAA---HLKSEIMSI------------FEELTQDDQDSVRLLAVEGCGALGKLL   58 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~---~~~~~l~~~------------l~~l~~~~~~~~r~~a~~~l~~i~~~~   58 (412)
                      .||..|..+|..+++..++.   .+|..++|-            +.-++.|+++.+|..|+..+..+....
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs   71 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS   71 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc
Confidence            38999999999999985542   356666653            445678999999999999999888763

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.26  Score=42.73  Aligned_cols=177  Identities=12%  Similarity=0.066  Sum_probs=111.9

Q ss_pred             CChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHH-HhhHHHHHH
Q 015150          116 DNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATI-EQLLPIFLS  190 (412)
Q Consensus       116 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~  190 (412)
                      ..+.+-|..|+..|..+++.+...  ......++.+...+++++..+|..+++.++..++.-++.  .+. ...++.+..
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            345677888888888888877654  222334555555888999999999999999887654321  111 223344444


Q ss_pred             h-hcccChHHHHHHHHHHHHHHHhhchhh--H-HhhHHHHHHHHhcC--CCchHHHHHHHHhhHHHhhhCh--hhHHHHH
Q 015150          191 L-LKDEFPDVRLNIISKLDQVNQVIGIDL--L-SQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV--GFFDDKL  262 (412)
Q Consensus       191 ~-l~d~~~~vr~~~~~~l~~i~~~~~~~~--~-~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l  262 (412)
                      . -.|++.++|..++.+++.+++...+..  + .-.=...+...+++  .+.+.++-++..++.+...-..  +......
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~  253 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG  253 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence            4 356677899999999999988755322  1 11114556677777  6677788888888877654321  2222333


Q ss_pred             HHHH-HHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150          263 GALC-MQWLKDKVYSIRDAAANNVKRLAEEF  292 (412)
Q Consensus       263 ~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~~  292 (412)
                      .+.. ..+....++++++.++..+-.+....
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence            3333 33445566778888887776666544

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.87  E-value=0.38  Score=48.12  Aligned_cols=233  Identities=17%  Similarity=0.135  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCC-C-cc----cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhcc
Q 015150           81 RVRYMVANQLYELCEAVGPE-P-TR----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS  154 (412)
Q Consensus        81 ~vR~~~~~~l~~l~~~~~~~-~-~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~  154 (412)
                      .+|...+..+..+...+..+ . +.    ..++..+..+-..+--.+|..|..+...+...+         +....++.+
T Consensus       170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~L---------v~va~~Ls~  240 (1048)
T KOG2011|consen  170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTAL---------VSVALNLSS  240 (1048)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence            57888888899888877652 2 22    334444444444555567877777666654432         111111111


Q ss_pred             -------------CCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHH-----HHhhcccChHHHHHHHHHHHHHHHhhch
Q 015150          155 -------------DSSQHVRSALATVIMGMAPILGKDATIEQLLPIF-----LSLLKDEFPDVRLNIISKLDQVNQVIGI  216 (412)
Q Consensus       155 -------------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l-----~~~l~d~~~~vr~~~~~~l~~i~~~~~~  216 (412)
                                   ..+..-|...-..+......-+.......++..+     ..--.|-++.+|..++..|+..+..++.
T Consensus       241 ~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~  320 (1048)
T KOG2011|consen  241 HNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPE  320 (1048)
T ss_pred             hhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccH
Confidence                         1111122211111222111111111111222222     2234688999999999999999998887


Q ss_pred             hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh---C-hhhHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHH
Q 015150          217 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEE  291 (412)
Q Consensus       217 ~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~  291 (412)
                      ..+...++..+-=.+.|.+..||..+++++..+...-   + -+.+.+.+..-++.+. .|-+..||...+..+-...  
T Consensus       321 ~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~--  398 (1048)
T KOG2011|consen  321 IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS--  398 (1048)
T ss_pred             HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh--
Confidence            6666667777777789999999999999999988762   2 1223333444444544 6777788877766543332  


Q ss_pred             hChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHH
Q 015150          292 FGPDWAMQHIVPQVLEMINNPHYLYRMTILQAIS  325 (412)
Q Consensus       292 ~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~  325 (412)
                       ....+.+.=+..+..++-|.+.+++.++...+.
T Consensus       399 -~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~  431 (1048)
T KOG2011|consen  399 -SSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY  431 (1048)
T ss_pred             -cccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence             222233334455666677777788887776664

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=96.83  E-value=0.16  Score=43.77  Aligned_cols=132  Identities=14%  Similarity=0.194  Sum_probs=80.4

Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh---H-----HHHHHHHHHHHhc--------CchhHHHHHHHH
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---F-----DDKLGALCMQWLK--------DKVYSIRDAAAN  283 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~-----~~~l~~~l~~~l~--------d~~~~vr~~a~~  283 (412)
                      .+.++|.+..++.|.++.+|...+.++..+....+...   +     .+.+.+.+..++.        ++...+-..|..
T Consensus       117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~  196 (282)
T PF10521_consen  117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP  196 (282)
T ss_pred             hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence            35678999999999999999999999988887665433   2     2334444555554        666777777888


Q ss_pred             HHHHHHHHhCh-------hhhhhhhHHHHHhhhcC----CchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCC
Q 015150          284 NVKRLAEEFGP-------DWAMQHIVPQVLEMINN----PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKD  350 (412)
Q Consensus       284 ~l~~l~~~~~~-------~~~~~~~l~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d  350 (412)
                      ++-.++.....       ..+.+.+...++..+..    +...++...++.+..+...+|..  .+.+.++|.+.+.+.+
T Consensus       197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n  276 (282)
T PF10521_consen  197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN  276 (282)
T ss_pred             HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence            87777664311       01111111112222211    23566677777777766666654  3566666666666665


Q ss_pred             C
Q 015150          351 R  351 (412)
Q Consensus       351 ~  351 (412)
                      +
T Consensus       277 p  277 (282)
T PF10521_consen  277 P  277 (282)
T ss_pred             C
Confidence            5

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.51  Score=45.06  Aligned_cols=289  Identities=11%  Similarity=0.023  Sum_probs=158.0

Q ss_pred             HHHHHHHhHHHHhhccCc-----hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC
Q 015150           43 VRLLAVEGCGALGKLLEP-----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN  117 (412)
Q Consensus        43 ~r~~a~~~l~~i~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  117 (412)
                      ....|.+.++.+...+..     ......+++.+....+++.--.|..+|+.++.+...+.+.....++......+++|.
T Consensus       432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn  511 (970)
T COG5656         432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNN  511 (970)
T ss_pred             HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcC
Confidence            345678888887774332     234555777778788888889999999999999777776666667778888889998


Q ss_pred             hHHHHHHHHHHHHHHHHhhC-HHHHHHhhhhhHHHhc---cCCcHHHHHHHHHHHH-hcCcc---cChhHHHHhhHH---
Q 015150          118 EAEVRIAAAGKVTKICRILN-PELAIQHILPCVKELS---SDSSQHVRSALATVIM-GMAPI---LGKDATIEQLLP---  186 (412)
Q Consensus       118 ~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~~---~d~~~~vr~~~~~~l~-~l~~~---~~~~~~~~~l~~---  186 (412)
                      +--|+-.|..++.-+..... .+.+.+++.+.+.+++   ++-+-++-..+.+.+. .+.+.   ++++. ...++.   
T Consensus       512 ~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eL-a~~Lv~qFl  590 (970)
T COG5656         512 HLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPEL-AGSLVRQFL  590 (970)
T ss_pred             CcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHH-HHHHHHHHH
Confidence            88899999999987765432 2345555555555544   4444444444443332 22222   22222 223333   


Q ss_pred             -HHHHhhccc---C---hHHHHHHH---HHHHHHHHhhchhh-----HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHH-
Q 015150          187 -IFLSLLKDE---F---PDVRLNII---SKLDQVNQVIGIDL-----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA-  250 (412)
Q Consensus       187 -~l~~~l~d~---~---~~vr~~~~---~~l~~i~~~~~~~~-----~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~-  250 (412)
                       ....++.++   +   ++-+.+|.   +.+..+.-.+....     +...+.|.+.-.+++.....-..+++.+.... 
T Consensus       591 kiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf  670 (970)
T COG5656         591 KIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTF  670 (970)
T ss_pred             HHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH
Confidence             333333322   1   12222222   33333332222111     23455666666666666666666666554432 


Q ss_pred             --hhhChhhHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHhChhhh-----hhhhHHHHHhhhcCCc--hHHHHHH
Q 015150          251 --SQLGVGFFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVLEMINNPH--YLYRMTI  320 (412)
Q Consensus       251 --~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~-----~~~~l~~l~~~~~~~~--~~~r~~~  320 (412)
                        +.+.+  ..-.+...+.+++.|+.. .--+.+..++..++..-+.++.     ...+.......+.+..  -.-+..+
T Consensus       671 ~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~v  748 (970)
T COG5656         671 MSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGV  748 (970)
T ss_pred             HHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHH
Confidence              22211  122355555666666653 4455666677777764333221     1222222233333332  2445667


Q ss_pred             HHHHHHhccccchh
Q 015150          321 LQAISLLAPVMGSE  334 (412)
Q Consensus       321 ~~~l~~l~~~~~~~  334 (412)
                      ++.+..+.-.++.+
T Consensus       749 c~i~e~l~Ln~rd~  762 (970)
T COG5656         749 CRIIESLILNIRDE  762 (970)
T ss_pred             HHHHHHHHHHccch
Confidence            77777776555553

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.78  E-value=0.37  Score=43.23  Aligned_cols=153  Identities=16%  Similarity=0.077  Sum_probs=100.1

Q ss_pred             hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-hhhhh-hhHHH-HHhhccC-CChHHHHHHHHHHHHHHHHh
Q 015150           22 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVA-HILPV-IVNFSQD-KSWRVRYMVANQLYELCEAV   97 (412)
Q Consensus        22 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-~~~~~-~l~~~-l~~l~~d-~~~~vR~~~~~~l~~l~~~~   97 (412)
                      +..+....+-++.++-+++..+|.++.+++..+...... ....+ .+--+ +..+..| ++..-|..|.+.+..+.+.-
T Consensus        20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~   99 (371)
T PF14664_consen   20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK   99 (371)
T ss_pred             hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence            445666666666544444489999999999877754321 11111 11112 2234444 45667999999999888763


Q ss_pred             -CCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150           98 -GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  174 (412)
Q Consensus        98 -~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  174 (412)
                       +.+....-++..+....+++++..|..|++.+..++-.-++-......+..+.+.+.|....+...++.++-.+...
T Consensus       100 ~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~  177 (371)
T PF14664_consen  100 KGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS  177 (371)
T ss_pred             CCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence             23344566788888899999999999999999998876555555555667777776665545555666655555443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.77  E-value=0.61  Score=45.50  Aligned_cols=233  Identities=12%  Similarity=0.094  Sum_probs=137.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHh--hCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh
Q 015150          115 RDNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL  192 (412)
Q Consensus       115 ~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  192 (412)
                      ..+.|..-..++..++.+.+.  ..+......+--.+..+..|..+.+|..++..+...+..---......++..+.++.
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qla  539 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLA  539 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHc
Confidence            455566666778888877765  333333222333333455688889999999988776632111122345666677777


Q ss_pred             cccChHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHHHh--cCCCchHHHHHHHHhhHHHh---hhChhhHHHHHHHH
Q 015150          193 KDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGAL  265 (412)
Q Consensus       193 ~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~~~--~d~~~~vr~~~~~~l~~l~~---~~~~~~~~~~l~~~  265 (412)
                      .+.+.++-...+.+|+.+++.=.+  ......+.|....+.  ..++|.+-..+-..+..+..   ..|+  .....+|-
T Consensus       540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPs  617 (1005)
T KOG2274|consen  540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPS  617 (1005)
T ss_pred             ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHH
Confidence            788899999999999998876321  122334555444321  22344555555455544443   3343  34557888


Q ss_pred             HHHHhcCch----hHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccc-----
Q 015150          266 CMQWLKDKV----YSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMG-----  332 (412)
Q Consensus       266 l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~-----  332 (412)
                      +++.+.-++    ......++..|..++++-.++   .+....+|.+.+..-+. +...-+.+-+++..+...-.     
T Consensus       618 lisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t  697 (1005)
T KOG2274|consen  618 LISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLT  697 (1005)
T ss_pred             HHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHh
Confidence            888777655    446666777788788765543   33456777777655443 35566777777777654311     


Q ss_pred             ----hhHHHHhhHHHHHhhcC
Q 015150          333 ----SEITCSQLLPVVINASK  349 (412)
Q Consensus       333 ----~~~~~~~il~~l~~~l~  349 (412)
                          ...-...++..+-.+|+
T Consensus       698 ~~~e~g~~~~yImqV~sqLLd  718 (1005)
T KOG2274|consen  698 WHDEPGHNLWYIMQVLSQLLD  718 (1005)
T ss_pred             hccCCCccHHHHHHHHHHHcC
Confidence                11123466776666654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.75  E-value=0.014  Score=45.28  Aligned_cols=142  Identities=17%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             hhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-----CChHHHHHHHHHHHHHHHHh-
Q 015150           63 CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-----DNEAEVRIAAAGKVTKICRI-  135 (412)
Q Consensus        63 ~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~-  135 (412)
                      .-+.+++.+.+.++ +.++.+|.++++.+|.++.-- +     .-...+.....     +.+.......   +...... 
T Consensus         7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD-P-----~~~k~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~   77 (160)
T PF11865_consen    7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALD-P-----YKHKSIQKSLDSKSSENSNDESTDIS---LPMMGISP   77 (160)
T ss_pred             HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC-c-----HHHhcccccCCccccccccccchhhH---HhhccCCC
Confidence            34567777777654 356889999999998887521 0     00010111111     1111111111   1100000 


Q ss_pred             hCHHHHHHhhhhhHHHhccCCcH-HHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHH
Q 015150          136 LNPELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  212 (412)
Q Consensus       136 ~~~~~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~  212 (412)
                      ..++.+....+..+.+.++|++- .-+.+++.++..+....|..+  +..+++|.+.+.++..++..|....+.|+.+..
T Consensus        78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            12334444455666666666442 334456666666665555443  346888888888887777888888877777765


Q ss_pred             h
Q 015150          213 V  213 (412)
Q Consensus       213 ~  213 (412)
                      .
T Consensus       158 i  158 (160)
T PF11865_consen  158 I  158 (160)
T ss_pred             H
Confidence            4

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=96.72  E-value=0.067  Score=44.11  Aligned_cols=130  Identities=17%  Similarity=0.176  Sum_probs=59.9

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-CChHHHHHH-HHHHHHHHHHhCCCCcccch
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTRSDV  106 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~~-~~~l~~l~~~~~~~~~~~~l  106 (412)
                      ..++..+..++..+.|..|+..+........     ...++.+...+.+ .+|.+--.. ...++.+....      +..
T Consensus        53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~  121 (213)
T PF08713_consen   53 YELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEA  121 (213)
T ss_dssp             HHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGH
T ss_pred             HHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHH
Confidence            3344445555555555555555544332211     1133344444333 345444333 22234333211      345


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP  173 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  173 (412)
                      .+.+.+.+++++.-+|..++..+......    .....++..+...+.|++..||.++..+|..++.
T Consensus       122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~  184 (213)
T PF08713_consen  122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK  184 (213)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            55556666666666666665555443332    1122344445555556666666666666655553

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=96.69  E-value=0.17  Score=46.63  Aligned_cols=73  Identities=16%  Similarity=0.172  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhh---hhhHHHHHhhcc
Q 015150            4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV---AHILPVIVNFSQ   76 (412)
Q Consensus         4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~---~~l~~~l~~l~~   76 (412)
                      .|..++++||.++..++.+......-+++..++++.....|..|+-++...+.........   ..+.+.+...++
T Consensus       103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~  178 (441)
T PF12054_consen  103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE  178 (441)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence            4889999999999998766655555567888899999989999999999998876543222   244444554444

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.65  Score=44.67  Aligned_cols=266  Identities=16%  Similarity=0.135  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccC-CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccCh
Q 015150          119 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP  197 (412)
Q Consensus       119 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  197 (412)
                      .+=|..|+..|..+++.+..+.....+-|++..+-.| .+++.-..+...+..+...                   |+.|
T Consensus        37 ~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~-------------------dd~~   97 (970)
T KOG0946|consen   37 LEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH-------------------DDSP   97 (970)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc-------------------Ccch
Confidence            5668999999999999887776666555555555455 3445444455444433321                   2122


Q ss_pred             HHHHHH--HHHHHH-HHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH-----HHHHHHHHHHH
Q 015150          198 DVRLNI--ISKLDQ-VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQW  269 (412)
Q Consensus       198 ~vr~~~--~~~l~~-i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~  269 (412)
                      +|-..-  ...++. ++..+-   -.+..+..++..++..+..||..+++.+..+....|.+.-     .+.-+.-++.+
T Consensus        98 ~v~dds~qsdd~g~~iae~fi---k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFI---KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHH---cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence            221111  111111 111111   0245677888888899999999999999999988876532     13345567888


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHhChh-h--hhhhhHHHHHhhhcC----CchHHHHHHHHHHHHhccccch-h-HH-HHh
Q 015150          270 LKDKVYSIRDAAANNVKRLAEEFGPD-W--AMQHIVPQVLEMINN----PHYLYRMTILQAISLLAPVMGS-E-IT-CSQ  339 (412)
Q Consensus       270 l~d~~~~vr~~a~~~l~~l~~~~~~~-~--~~~~~l~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~~-~-~~-~~~  339 (412)
                      |.|....||..++-.|..+.+..+.- .  ..+.++..+...+..    ..-.|-+-++..+..+.+.... . +| ...
T Consensus       175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~  254 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS  254 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence            99999999999999998888755421 0  012233333333332    2234555666666666543332 2 22 224


Q ss_pred             hHHHHHhhc-----CCC---Cch-HHHHHHHH-HHHHhhhhch---H---------HHHhhHHHHHHhhcCCC--CccHH
Q 015150          340 LLPVVINAS-----KDR---VPN-IKFNVAKV-LQSLIPIVDQ---S---------VVEKSIRPCLVELSEDP--DVDVR  395 (412)
Q Consensus       340 il~~l~~~l-----~d~---~~~-vR~~~~~~-l~~l~~~~~~---~---------~~~~~i~~~l~~l~~d~--~~~vr  395 (412)
                      .+|.+.++|     .|.   .|+ -|...+.. |.-+...+.|   .         .....++..|...+..+  ..+|+
T Consensus       255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl  334 (970)
T KOG0946|consen  255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL  334 (970)
T ss_pred             cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence            667666554     232   222 23332222 2222211211   0         12345666666655444  44677


Q ss_pred             HHHHHHHHHhH
Q 015150          396 FFATQALQSKD  406 (412)
Q Consensus       396 ~~a~~al~~~~  406 (412)
                      ..+.-+++.+.
T Consensus       335 tesiitvAevV  345 (970)
T KOG0946|consen  335 TESIITVAEVV  345 (970)
T ss_pred             HHHHHHHHHHH
Confidence            76666665544

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.78  Score=45.19  Aligned_cols=93  Identities=17%  Similarity=0.194  Sum_probs=72.6

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  373 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  373 (412)
                      .+++.....++.+++-++|..++.++......+...     +.....+|.+.+.+.+++|-+-..|++++..++...|+-
T Consensus       802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF  881 (1014)
T KOG4524|consen  802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF  881 (1014)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence            346666677888999999999999998766554432     234467888899999999999999999999998887773


Q ss_pred             ---HHHhhHHHHHHhhcCCCC
Q 015150          374 ---VVEKSIRPCLVELSEDPD  391 (412)
Q Consensus       374 ---~~~~~i~~~l~~l~~d~~  391 (412)
                         .+.+.++|-+++++.|.-
T Consensus       882 v~sR~l~dvlP~l~~~~~~~~  902 (1014)
T KOG4524|consen  882 VASRFLEDVLPWLKHLCQDSF  902 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence               466889999998765543

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=96.55  E-value=0.48  Score=41.53  Aligned_cols=244  Identities=14%  Similarity=0.110  Sum_probs=134.9

Q ss_pred             HHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC------
Q 015150           43 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD------  116 (412)
Q Consensus        43 ~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d------  116 (412)
                      -++.|.+.++...+++++  .....+..-+.++.|.+..||..+++.|..++..    .....+.+.+.++++.      
T Consensus        40 ~k~lasq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~L  113 (460)
T KOG2213|consen   40 EKRLASQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGL  113 (460)
T ss_pred             HHHHHHHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHH
Confidence            466788899999988865  2345667778899999999999999999988864    2223444555555432      


Q ss_pred             ------ChHHHHHHHHHHHHHHHHhhCH----HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhh
Q 015150          117 ------NEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQL  184 (412)
Q Consensus       117 ------~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l  184 (412)
                            .+..+|..+..-+..=...++.    .+...+++..+.+.+.|-..+-=......++.+...-++  +.-.+.|
T Consensus       114 f~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeL  193 (460)
T KOG2213|consen  114 FGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQEL  193 (460)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHH
Confidence                  2566777666655432211222    345556777777777776555444455555554433222  2223444


Q ss_pred             HHHHHHh-----hcccChHHHHHHHHHHHHHHHhhch----hhHHhhHHHHHHHHhcCCC-chHHHHHHHHhhHHHhhhC
Q 015150          185 LPIFLSL-----LKDEFPDVRLNIISKLDQVNQVIGI----DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLG  254 (412)
Q Consensus       185 ~~~l~~~-----l~d~~~~vr~~~~~~l~~i~~~~~~----~~~~~~~~~~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~  254 (412)
                      +......     ..-.|++.....++++..-.+.+..    ..+...+-..+...-.|.. ...+..+++.+..++....
T Consensus       194 a~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~tt  273 (460)
T KOG2213|consen  194 AEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTT  273 (460)
T ss_pred             HHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccch
Confidence            4444333     2224566667777776666555442    2222222222211112222 3455667778877777664


Q ss_pred             hhhHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHHhC
Q 015150          255 VGFFDDKLGALCMQWLK------DKVYSIRDAAANNVKRLAEEFG  293 (412)
Q Consensus       255 ~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~  293 (412)
                      .+. ..+.+|-+.++|.      |.-++....-+.++-.....+|
T Consensus       274 aq~-a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg  317 (460)
T KOG2213|consen  274 AQA-ARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG  317 (460)
T ss_pred             HHH-HHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence            332 3335555555442      3344445555555555555554

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=96.53  E-value=0.96  Score=45.99  Aligned_cols=170  Identities=18%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHhhCHHHHH--HhhhhhHHHhcc---CCcHHHHHHHHHHHHhcCcccChhHH-HHhhHHHHHHhhcc
Q 015150          121 VRIAAAGKVTKICRILNPELAI--QHILPCVKELSS---DSSQHVRSALATVIMGMAPILGKDAT-IEQLLPIFLSLLKD  194 (412)
Q Consensus       121 vr~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~~~~---d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d  194 (412)
                      -|..|-..|..+++.++...+.  .++..++..-++   |.+. --....+.+..+....+.... .-..+|.+..+...
T Consensus       749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~~~~~l~~l~~~~~s  827 (1549)
T KOG0392|consen  749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHPLGSLLPRLFFFVRS  827 (1549)
T ss_pred             HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHhccc
Confidence            3777777888888888776332  223333333322   1110 000111111111211121110 12456777888888


Q ss_pred             cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHH-HhhHHHhhhCh--hhHHHHHHHHHHHHhc
Q 015150          195 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE-YIPLLASQLGV--GFFDDKLGALCMQWLK  271 (412)
Q Consensus       195 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~-~l~~l~~~~~~--~~~~~~l~~~l~~~l~  271 (412)
                      .+..+|.+++++++.+......+.. ..++..+..++++.+.-+|+..+. .+..+....+.  ..+..-++|.++.++.
T Consensus       828 ~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms  906 (1549)
T KOG0392|consen  828 IHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS  906 (1549)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence            9999999999999999877554443 445566666777776666665554 44444444332  2245667888899999


Q ss_pred             CchhHHHHHHHHHHHHHHHHh
Q 015150          272 DKVYSIRDAAANNVKRLAEEF  292 (412)
Q Consensus       272 d~~~~vr~~a~~~l~~l~~~~  292 (412)
                      |....||.+|.+++..++..+
T Consensus       907 d~~d~vR~aat~~fa~lip~~  927 (1549)
T KOG0392|consen  907 DQIDSVREAATKVFAKLIPLL  927 (1549)
T ss_pred             cchHHHHHHHHHHHHHHhccc
Confidence            999999999999999988755

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=96.53  E-value=0.61  Score=42.44  Aligned_cols=335  Identities=13%  Similarity=0.098  Sum_probs=154.8

Q ss_pred             HhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHH
Q 015150           49 EGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK  128 (412)
Q Consensus        49 ~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  128 (412)
                      ..+-.+....+.++...+++.++-.++++....++     .+...+. .     ..+....+..+++.+++-+...++..
T Consensus        56 ~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~-----~f~~~~~-~-----~~~~~~~fl~lL~~~d~~i~~~a~~i  124 (429)
T cd00256          56 KTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVK-----LFHDDAL-L-----KKKTWEPFFNLLNRQDQFIVHMSFSI  124 (429)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHH-----HHHHHhh-c-----cccchHHHHHHHcCCchhHHHHHHHH
Confidence            44444555555566666677777666665322222     1111111 0     12223334447777788899999999


Q ss_pred             HHHHHHhhCH---HHHHHhhhhhHHHhccCC-cHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhcccC--hHHH
Q 015150          129 VTKICRILNP---ELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEF--PDVR  200 (412)
Q Consensus       129 l~~l~~~~~~---~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~--~~vr  200 (412)
                      +..+...-..   ......+...+...++.. +......++.++..+...-.-.  ......++.+.++++...  .+..
T Consensus       125 Lt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~  204 (429)
T cd00256         125 LAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQ  204 (429)
T ss_pred             HHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence            8888654221   122333444555555432 3455566667777765432211  122334566666665422  2344


Q ss_pred             HHHHHHHHHHH--HhhchhhHHhhHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhhC----hhhHH-----HHHHHHHHH
Q 015150          201 LNIISKLDQVN--QVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLG----VGFFD-----DKLGALCMQ  268 (412)
Q Consensus       201 ~~~~~~l~~i~--~~~~~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~----~~~~~-----~~l~~~l~~  268 (412)
                      -.++-++..+.  ...........++|.+.+++++. ..++-+.++..+..+.....    ...+.     ..+.+. ++
T Consensus       205 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~-l~  283 (429)
T cd00256         205 YQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKT-LQ  283 (429)
T ss_pred             HHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHH-HH
Confidence            34433333221  11001111235677777766553 33444444455555544321    11111     122222 22


Q ss_pred             HhcC---chhHHHHHHHHHHHHHHHHhChh-hhhhhhHHHHHh-hhc----CCc-hHHHHHHHHHHHHhccccchhHHHH
Q 015150          269 WLKD---KVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLE-MIN----NPH-YLYRMTILQAISLLAPVMGSEITCS  338 (412)
Q Consensus       269 ~l~d---~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~-~~~----~~~-~~~r~~~~~~l~~l~~~~~~~~~~~  338 (412)
                      .|..   .++++.+ .+..+...++..-.+ .-.+.....+.. .+.    |.+ ---|+.+-..-        .+  .-
T Consensus       284 ~L~~rk~~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~--------~~--~~  352 (429)
T cd00256         284 SLEQRKYDDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLN--------EK--NY  352 (429)
T ss_pred             HHhcCCCCcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHH--------hc--ch
Confidence            2322   1233333 222222222211000 000111111111 111    111 11122222211        11  11


Q ss_pred             hhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhch--HHHH-hhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          339 QLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ--SVVE-KSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       339 ~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~--~~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      .++..+.+.+. +.++.+-..|+.=+|.++..+..  .... -..-..+..+++++|++||..|..|+..+.
T Consensus       353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            34555566653 34556666777788888877632  2221 235667888899999999999999998774

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=96.51  E-value=0.18  Score=45.06  Aligned_cols=88  Identities=16%  Similarity=0.030  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhc-cCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150            3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR   81 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~   81 (412)
                      .-|-..++.+..+..    ...-..+...+..++ ++.++......+.++..-+..+ .....+.+...+.+.++|+.+.
T Consensus         2 d~r~~~~~~L~~l~~----~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~   76 (339)
T PF12074_consen    2 DQRVLHASMLSSLPS----SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPP   76 (339)
T ss_pred             cHHHHHHHHHHhCCC----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCc
Confidence            345555666665544    113333444444444 4557777888888888888777 3446678999999999999888


Q ss_pred             HHHHHHHHHHHHHH
Q 015150           82 VRYMVANQLYELCE   95 (412)
Q Consensus        82 vR~~~~~~l~~l~~   95 (412)
                      +|+.-+..++....
T Consensus        77 vR~~w~~~~~~~~~   90 (339)
T PF12074_consen   77 VRRAWLLCLGEALW   90 (339)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999876

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=96.47  E-value=0.21  Score=43.27  Aligned_cols=166  Identities=18%  Similarity=0.179  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHHHHHhhchhhHHhh---HHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHH---Hh
Q 015150          197 PDVRLNIISKLDQVNQVIGIDLLSQS---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ---WL  270 (412)
Q Consensus       197 ~~vr~~~~~~l~~i~~~~~~~~~~~~---~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~---~l  270 (412)
                      ..|-..|+.....+.+.+|++.+.++   ..|-+..++....-.||-..+..+....-.+|. .+.+.+.+++..   .+
T Consensus        69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGL  147 (307)
T PF04118_consen   69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGL  147 (307)
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccc
Confidence            35666777777888888777665433   356667777777778998888888887777777 555555555544   46


Q ss_pred             cCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc------h-h---HH----
Q 015150          271 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG------S-E---IT----  336 (412)
Q Consensus       271 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~------~-~---~~----  336 (412)
                      .|++.++-..+...+..+...+|.+.+...+.-.+.     .++.+|..++..+..-.....      . +   ..    
T Consensus       148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  222 (307)
T PF04118_consen  148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPD  222 (307)
T ss_pred             ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCC
Confidence            788999999999999999999988866554444433     456688888888766544433      0 0   00    


Q ss_pred             HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150          337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  368 (412)
                      ..-++..+...++|++.-|++.++..|-.-.+
T Consensus       223 ~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P  254 (307)
T PF04118_consen  223 PGLLVRALCACLEDENILVQRGFLDLLLSHFP  254 (307)
T ss_pred             ccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence            22366678888999999999999988876554

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.45  E-value=0.78  Score=42.87  Aligned_cols=244  Identities=14%  Similarity=0.110  Sum_probs=123.2

Q ss_pred             chhHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCC-
Q 015150            2 PMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK-   78 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~-   78 (412)
                      +.+|+++.+.+..+++.-..  ......+...+..-..+++-..|..|+..|..=++.+..  +...+.|.+...+..- 
T Consensus        43 ~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~  120 (464)
T PF11864_consen   43 SEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSY  120 (464)
T ss_pred             HHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHH
Confidence            46899999999998885433  223444445544444455556677777777665555522  3444555554433210 


Q ss_pred             --------------------------ChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCC-hHHHHHHHHHH
Q 015150           79 --------------------------SWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDN-EAEVRIAAAGK  128 (412)
Q Consensus        79 --------------------------~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~vr~~a~~~  128 (412)
                                                +...-....+.+..+.+.-..-   .....++..+..++... ....=..++..
T Consensus       121 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~v  200 (464)
T PF11864_consen  121 QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSV  200 (464)
T ss_pred             HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence                                      1111122222333333322111   11223444444444322 23333677777


Q ss_pred             HHHHHHh--hCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc-ccChhHHHHhhHHHHHHhhc--c----cChHH
Q 015150          129 VTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP-ILGKDATIEQLLPIFLSLLK--D----EFPDV  199 (412)
Q Consensus       129 l~~l~~~--~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~-~~~~~~~~~~l~~~l~~~l~--d----~~~~v  199 (412)
                      +..+..+  ++.+.+ ..++..+.....-.  .....+-+++..++. +.|.     ..+-.+...+.  |    ++..+
T Consensus       201 ldaii~y~~iP~~sl-~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-----~~i~~L~~iL~~~~~~~~~~~~~  272 (464)
T PF11864_consen  201 LDAIITYGDIPSESL-SPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-----SAIRTLCDILRSPDPQNKRDINV  272 (464)
T ss_pred             HHHHHHcCcCChHHH-HHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-----HHHHHHHHHHcccCccccccHHH
Confidence            7777663  343322 23334443332211  233333444444442 2232     33445555552  2    23344


Q ss_pred             HHHHHHHHHHHHHhhchhhH------HhhHHHHHHHHhcCCCchHHHHHHHHhhHHH-hhhCh
Q 015150          200 RLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA-SQLGV  255 (412)
Q Consensus       200 r~~~~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~-~~~~~  255 (412)
                      -.+|+..+..+.-..+.+.+      ...++|.+...++.++.++-..++..+..+. +.++.
T Consensus       273 lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~  335 (464)
T PF11864_consen  273 LRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGR  335 (464)
T ss_pred             HhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhh
Confidence            44667777766544432221      1238899999999888888888888777777 54444

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=96.45  E-value=0.59  Score=41.72  Aligned_cols=106  Identities=14%  Similarity=0.075  Sum_probs=70.4

Q ss_pred             HHHHHHHhHHHHhhccCchhhhhhhHHHHHhhc-cCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHH
Q 015150           43 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV  121 (412)
Q Consensus        43 ~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  121 (412)
                      .|...++++..+..    ......+...+..+. ++.+......++.+++.-...+ .....+.++..+.+.++|..+.+
T Consensus         3 ~r~~~~~~L~~l~~----~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~v   77 (339)
T PF12074_consen    3 QRVLHASMLSSLPS----SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPV   77 (339)
T ss_pred             HHHHHHHHHHhCCC----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcH
Confidence            45555555554443    224455555555554 4567788889999998888777 34445789999999999999999


Q ss_pred             HHHHHHHHHHHHH---hhCHHHHHHhhhhhHHHhc
Q 015150          122 RIAAAGKVTKICR---ILNPELAIQHILPCVKELS  153 (412)
Q Consensus       122 r~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~~  153 (412)
                      |+.-+.+++....   ......+...++|.+.+.+
T Consensus        78 R~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  112 (339)
T PF12074_consen   78 RRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL  112 (339)
T ss_pred             HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence            9999999998776   1112233344555555443

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.48  Score=40.21  Aligned_cols=58  Identities=26%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             CCCchHHHHHHHHHHHHhhh-hchHHH-HhhHHHHHHhh-cCCCCccHHHHHHHHHHHhHH
Q 015150          350 DRVPNIKFNVAKVLQSLIPI-VDQSVV-EKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       350 d~~~~vR~~~~~~l~~l~~~-~~~~~~-~~~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ++++.+|...+.+|-.++.. .|.+.+ ...+.|.+..+ ...+++++|..+......+..
T Consensus       255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            66788999999999888644 455544 35677777774 566888999888877766654

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.43  E-value=0.31  Score=54.42  Aligned_cols=262  Identities=15%  Similarity=0.198  Sum_probs=149.2

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhHHHHhhcc----Cc-h-----hhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150           27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLL----EP-Q-----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA   96 (412)
Q Consensus        27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~----~~-~-----~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~   96 (412)
                      .+++.+...+..++..++..+..++..+....    +. +     .....+++.+.++|.++.|.-|..++..++.+...
T Consensus       984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen  984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence            46677778888888889998888888776542    21 1     23455888889999999999999999999988887


Q ss_pred             hCCCC---cccchHHHHHHhcCCChHHHHH----HHHHHHHHHHHhh----CHH----HHHHhhhhhHHHhccCCcHHHH
Q 015150           97 VGPEP---TRSDVVPAYVRLLRDNEAEVRI----AAAGKVTKICRIL----NPE----LAIQHILPCVKELSSDSSQHVR  161 (412)
Q Consensus        97 ~~~~~---~~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~l~~~~----~~~----~~~~~~~~~l~~~~~d~~~~vr  161 (412)
                      +....   +..+++..+...+.|...++..    .+-..+..+...+    ..+    .....++..+..-+.+++..||
T Consensus      1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred             chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            66221   1223455555555554433332    2222222222221    111    2233344455555677888999


Q ss_pred             HHHHHHHHhcCcccChhHHHHhhHHHHHHhh---------cccChHHHHHHHHHHHHHHHhhchhhH--------HhhHH
Q 015150          162 SALATVIMGMAPILGKDATIEQLLPIFLSLL---------KDEFPDVRLNIISKLDQVNQVIGIDLL--------SQSLL  224 (412)
Q Consensus       162 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---------~d~~~~vr~~~~~~l~~i~~~~~~~~~--------~~~~~  224 (412)
                      ..+...+..+++..|.+.  ..++..+.+++         ..-.-.++..-+.++.-.. .++++.+        ....+
T Consensus      1144 ~~~~~~L~~i~~~s~~~v--~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~-~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSV--VKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL-SLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred             HHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH-HcCCcccCchHHHHHHHHHH
Confidence            999999999988776543  22333333332         2222233333332222222 1222211        00111


Q ss_pred             HHHHH-----------Hhc----CCCchHHHHHHHHhhHHHhhhCh-----hhHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150          225 PAIVE-----------LAE----DRHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDKVYSIRDAAANN  284 (412)
Q Consensus       225 ~~l~~-----------~~~----d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  284 (412)
                      ..+..           ...    ...-+.|.++.+.+........-     ..+.+.++.++.+.+..+.+++.+.+...
T Consensus      1221 ~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1221 IALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred             HHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            11111           111    11234577777777665543321     22456788888888888899999999888


Q ss_pred             HHHHHHH
Q 015150          285 VKRLAEE  291 (412)
Q Consensus       285 l~~l~~~  291 (412)
                      +..+...
T Consensus      1301 l~~v~~~ 1307 (3550)
T KOG0889|consen 1301 LRKVLAQ 1307 (3550)
T ss_pred             HHhhhhc
Confidence            8776653

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.77  Score=42.38  Aligned_cols=293  Identities=13%  Similarity=0.116  Sum_probs=159.5

Q ss_pred             hHHHHHhhccCCC---hHHHHHHHHHHHHHHH--HhCCCCcc--cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-
Q 015150           67 ILPVIVNFSQDKS---WRVRYMVANQLYELCE--AVGPEPTR--SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-  138 (412)
Q Consensus        67 l~~~l~~l~~d~~---~~vR~~~~~~l~~l~~--~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-  138 (412)
                      ++..+..++++++   ..+-..+.+++++...  .+..+...  .-++...+..+++  ...-..|..++..+...... 
T Consensus       154 ~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~  231 (559)
T KOG2081|consen  154 VLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSD--DELHEEATECICALLYCSLDR  231 (559)
T ss_pred             HHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhh
Confidence            4444555554432   4444555555555443  22222111  1345555666663  34455566666554432211 


Q ss_pred             HH---HH------HhhhhhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHHH--HhhHHHHHH---hhcccChHHHHHH
Q 015150          139 EL---AI------QHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLS---LLKDEFPDVRLNI  203 (412)
Q Consensus       139 ~~---~~------~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~---~l~d~~~~vr~~~  203 (412)
                      +.   +.      ..+++...++ ....+..-+.+.+..+..+++.+-.....  +..++.+..   .-...+.+|-...
T Consensus       232 ~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~S  311 (559)
T KOG2081|consen  232 SEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEAS  311 (559)
T ss_pred             hccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhh
Confidence            10   11      1123333333 23445556677777777776654221111  233333322   2334455666665


Q ss_pred             HHHHHHHHHhhch---hhHHhhHHHHHHHH-------h------------cCCCchHHHHHHHHhhHHHhhhChhhHHHH
Q 015150          204 ISKLDQVNQVIGI---DLLSQSLLPAIVEL-------A------------EDRHWRVRLAIIEYIPLLASQLGVGFFDDK  261 (412)
Q Consensus       204 ~~~l~~i~~~~~~---~~~~~~~~~~l~~~-------~------------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  261 (412)
                      ......+.+.+..   +.....+-|.+.++       +            +++..+.|......+.-++-.+|...... 
T Consensus       312 F~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk-  390 (559)
T KOG2081|consen  312 FNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLK-  390 (559)
T ss_pred             HHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHH-
Confidence            5555555444321   11111122222222       1            11123578888888888888888754332 


Q ss_pred             HHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC--chHHHHHHHHHHHHhccccchhH-HH
Q 015150          262 LGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEI-TC  337 (412)
Q Consensus       262 l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~-~~  337 (412)
                        ..+..+.. ...|+.-++++-.+..+++++.++  .+.++|.+++.+.+-  ...+|.+++..+|.+++.....+ ..
T Consensus       391 --~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~l  466 (559)
T KOG2081|consen  391 --QMYIRLKENNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELL  466 (559)
T ss_pred             --HHHHHHccCCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHH
Confidence              33344333 678999999999999999988766  467888888877653  35599999999999998887653 44


Q ss_pred             HhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150          338 SQLLPVVINASKDRVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  368 (412)
                      +-++..+...+.+..  .-..++.+...+..
T Consensus       467 e~v~~~~~~~~~~~~--~as~~a~~~~~i~~  495 (559)
T KOG2081|consen  467 EPVLRYIRQGLQLKR--LASAAALAFHRICS  495 (559)
T ss_pred             HHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence            455566666676655  44455555555543

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.42  E-value=0.085  Score=40.51  Aligned_cols=141  Identities=18%  Similarity=0.182  Sum_probs=85.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhc-cCCCh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSW   80 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~-~d~~~   80 (412)
                      |.||.+.+.++..++...-++. |+.+++.+..+.+.+ +......+..+..+.+.+.+             .. .+.+.
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~   66 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQ   66 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred             hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence            4689999999999998765444 666777776666663 45555666666666554321             10 11122


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC----hHHHHHHHHHHHHHHHHhhCHHHHHHh-hhhhHHHhccC
Q 015150           81 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN----EAEVRIAAAGKVTKICRILNPELAIQH-ILPCVKELSSD  155 (412)
Q Consensus        81 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~~~~d  155 (412)
                      ..|...-+.+..-.         +.++..+.+.++..    ..++...+++++..+.+..+.+...+. +++.+.+++.+
T Consensus        67 ~r~~~l~~~l~~~~---------~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~  137 (148)
T PF08389_consen   67 ERRRELKDALRSNS---------PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS  137 (148)
T ss_dssp             HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence            33444333443332         33445554444322    378889999999998887777765553 77778777754


Q ss_pred             CcHHHHHHHHHHH
Q 015150          156 SSQHVRSALATVI  168 (412)
Q Consensus       156 ~~~~vr~~~~~~l  168 (412)
                      ++  .+..|++++
T Consensus       138 ~~--~~~~A~~cl  148 (148)
T PF08389_consen  138 PE--LREAAAECL  148 (148)
T ss_dssp             CC--CHHHHHHHH
T ss_pred             HH--HHHHHHHhC
Confidence            43  367776654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=96.42  E-value=0.047  Score=47.09  Aligned_cols=75  Identities=23%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC---c-----ccchHHHHHHhcC--------CChHHHHHH
Q 015150           61 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---T-----RSDVVPAYVRLLR--------DNEAEVRIA  124 (412)
Q Consensus        61 ~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~---~-----~~~l~~~l~~~l~--------d~~~~vr~~  124 (412)
                      +.....++|.++.++.|.++.+|..++++|..+....+...   .     .+.+.+.+..++.        ++...+-..
T Consensus       114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~  193 (282)
T PF10521_consen  114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA  193 (282)
T ss_pred             HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence            34566789999999999999999999999999988766444   1     1223444444444        555666667


Q ss_pred             HHHHHHHHHHh
Q 015150          125 AAGKVTKICRI  135 (412)
Q Consensus       125 a~~~l~~l~~~  135 (412)
                      +..++..+.+.
T Consensus       194 ay~~L~~L~~~  204 (282)
T PF10521_consen  194 AYPALLSLLKT  204 (282)
T ss_pred             HHHHHHHHHHh
Confidence            77777666554

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=1.3  Score=43.35  Aligned_cols=358  Identities=11%  Similarity=0.071  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCc-----hHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhc----
Q 015150            5 RRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ-----DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS----   75 (412)
Q Consensus         5 R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~-----~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~----   75 (412)
                      |+.....+...-..++ +...+.+...+.+++.+.+     -..-.+++..+..++.+.+..+  ..-+|-+.+.+    
T Consensus       441 R~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik  517 (982)
T KOG2022|consen  441 RKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIK  517 (982)
T ss_pred             HHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccc
Confidence            3333333333333334 3445555556666665443     2234566788889998887643  22244444332    


Q ss_pred             -cCCChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHH
Q 015150           76 -QDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKE  151 (412)
Q Consensus        76 -~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~  151 (412)
                       +-.++..-..+...+|.++..+++.. ..+..+|.+.+.+..+..  -..+...+..+++.+..+  ++...++.....
T Consensus       518 ~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e  595 (982)
T KOG2022|consen  518 LSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYE  595 (982)
T ss_pred             cccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence             22477888889999999999888765 456789999998875443  344555688888877654  333334444333


Q ss_pred             hc--cCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHh-------hcc--cChHHHHHHHH---HHHHHHHhhc-h
Q 015150          152 LS--SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL-------LKD--EFPDVRLNIIS---KLDQVNQVIG-I  216 (412)
Q Consensus       152 ~~--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-------l~d--~~~~vr~~~~~---~l~~i~~~~~-~  216 (412)
                      .+  ..-....|..+..++|.+.+....+...+++...+...       +..  ++++-+...+-   ++..+...+. +
T Consensus       596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~  675 (982)
T KOG2022|consen  596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINK  675 (982)
T ss_pred             HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            33  23345678889999999888777665554433322221       111  12222222221   2222222211 0


Q ss_pred             ---------------------hhHHhhHHHHHHHHhcC--CCchHHHHHHHHhhHHHhhhChhh---HHHHHHHHHHHHh
Q 015150          217 ---------------------DLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWL  270 (412)
Q Consensus       217 ---------------------~~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l  270 (412)
                                           -.+...++|.+.+.++-  .+..+-.+++..+..=....+..+   ..+.+.+++..+.
T Consensus       676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~  755 (982)
T KOG2022|consen  676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFL  755 (982)
T ss_pred             CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc
Confidence                                 01234556666555431  222333333333332222333331   2244555555533


Q ss_pred             cCchhHHHHHHHHHHHHHH-HHhChhhh-------hhhhHHHHHhhhc----CCchHHHHHHHHHHHHhccccch-----
Q 015150          271 KDKVYSIRDAAANNVKRLA-EEFGPDWA-------MQHIVPQVLEMIN----NPHYLYRMTILQAISLLAPVMGS-----  333 (412)
Q Consensus       271 ~d~~~~vr~~a~~~l~~l~-~~~~~~~~-------~~~~l~~l~~~~~----~~~~~~r~~~~~~l~~l~~~~~~-----  333 (412)
                      ..+....    +.....++ ...+.+..       ....+.....++.    .++.++-...+.++..+.+..+.     
T Consensus       756 ~~~~a~t----l~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~  831 (982)
T KOG2022|consen  756 TSCLAVT----LSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPS  831 (982)
T ss_pred             cchHHHH----HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccc
Confidence            3322111    11111111 11111100       0111111111222    23456667777777777654432     


Q ss_pred             -hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150          334 -EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  371 (412)
Q Consensus       334 -~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  371 (412)
                       ..|..-+++..+.+++.+++-.-+++.+.+..+...-+
T Consensus       832 ~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~  870 (982)
T KOG2022|consen  832 MLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYAT  870 (982)
T ss_pred             hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcc
Confidence             24666788888899999988877788888887765433

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.26  E-value=0.91  Score=41.58  Aligned_cols=253  Identities=11%  Similarity=0.080  Sum_probs=130.2

Q ss_pred             ccCCcHHHHHHHHHHHHhcCcccChhH----HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh-c-hhhHHhhHHHH
Q 015150          153 SSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-G-IDLLSQSLLPA  226 (412)
Q Consensus       153 ~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~-~-~~~~~~~~~~~  226 (412)
                      ..|++|.--..+.+.+..+......+.    +...++-.+..+++.+|+.-|......+..+-... + ...+.+.+...
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            345666655556666655544433222    34566666777777777877777766666654332 2 12233444444


Q ss_pred             HHHHhcC-CCchHHHHHHHHhhHHHhhhC---hhhHHHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHHhChhhhhhhh
Q 015150          227 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI  301 (412)
Q Consensus       227 l~~~~~d-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~  301 (412)
                      +.++..+ ....-=..+++.++.+...+.   ++.....+...++.+.+.+... -......++..+++.-  ..+...+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHH
Confidence            4444432 222233345556666665543   1222333344444444544333 2344444555444421  1223445


Q ss_pred             HHHHHhhhcCCchHHHHHHHHHHHHhccccchhHH---HHhhHHHHHhhcCCCCchHHHHHHHHHHH--Hhhhhc--hHH
Q 015150          302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINASKDRVPNIKFNVAKVLQS--LIPIVD--QSV  374 (412)
Q Consensus       302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~---~~~il~~l~~~l~d~~~~vR~~~~~~l~~--l~~~~~--~~~  374 (412)
                      +..+++..--.+..-...++.-+..+.+.++.+.+   ...++..+..++++++..|-..|+..+..  +...+.  ...
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~  336 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRV  336 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHH
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHH
Confidence            55555555556666677888888888887776543   44566667777888888887777654421  122111  122


Q ss_pred             HHhhHHHHHHhh-cCCCCccHHHHHHHHHHHhHH
Q 015150          375 VEKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       375 ~~~~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ..+.+.|.|.+. .++=+..||..+..++..+.+
T Consensus       337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~  370 (409)
T PF01603_consen  337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME  370 (409)
T ss_dssp             HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            334555555553 344466788888888887765

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.13  E-value=0.66  Score=38.78  Aligned_cols=200  Identities=17%  Similarity=0.146  Sum_probs=106.6

Q ss_pred             hhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHH--
Q 015150          191 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ--  268 (412)
Q Consensus       191 ~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~--  268 (412)
                      +-+..++++....++.|+.++..-.  ...+.++..+..+.+.+....+..+...+..+-+.-...  .+.+.+++..  
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~~   84 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLLI   84 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHH
Confidence            4555667777777777777765521  222445555566666665555444544444444332221  1223333222  


Q ss_pred             -------HhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhh-cCCchHHHHHHHHHHHHhccccchh--HHHH
Q 015150          269 -------WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSE--ITCS  338 (412)
Q Consensus       269 -------~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~  338 (412)
                             .-.+..+++..+...++..++...+.  ....+++.+...+ ++.+...+..+++.+..+++.--.+  ..+.
T Consensus        85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~  162 (234)
T PF12530_consen   85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK  162 (234)
T ss_pred             hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence                   01244555666656677777765543  3456778888888 6777788888888888887322222  2333


Q ss_pred             hhHHHHHhhcCCCCchHHHHHHHHHHHHhhh-hch---HHHHhhHHHHHHhhcCCCCccHHHHHH
Q 015150          339 QLLPVVINASKDRVPNIKFNVAKVLQSLIPI-VDQ---SVVEKSIRPCLVELSEDPDVDVRFFAT  399 (412)
Q Consensus       339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~-~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~  399 (412)
                      .+.+.+   -.|..|.|-...+..+..+... ++.   +.+...++..+.+..+..+.++...+.
T Consensus       163 vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~  224 (234)
T PF12530_consen  163 VLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWT  224 (234)
T ss_pred             HHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHH
Confidence            343433   2334444444333333322211 111   245677888888887777755333333

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=96.12  E-value=2.7  Score=46.73  Aligned_cols=250  Identities=17%  Similarity=0.212  Sum_probs=148.5

Q ss_pred             HHHHHhccCCchHHHHHHHHhHHHHhhccCc--------hhhhhhhHHHHHhh-ccCCChHHHHHHHHHHHHHHHHhCCC
Q 015150           30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEP--------QDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPE  100 (412)
Q Consensus        30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--------~~~~~~l~~~l~~l-~~d~~~~vR~~~~~~l~~l~~~~~~~  100 (412)
                      ..+...+..+++++|..+...+..+..+...        -.....++..+..+ ..|+++.+|......+.   ..+...
T Consensus       484 ~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~  560 (2341)
T KOG0891|consen  484 QCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQ  560 (2341)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhh
Confidence            3355567888889999987777766665432        11244455555544 56888888888777665   222233


Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHH----hcc----CCcHHHHHHHHHHHHhcC
Q 015150          101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE----LSS----DSSQHVRSALATVIMGMA  172 (412)
Q Consensus       101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~----~~~----d~~~~vr~~~~~~l~~l~  172 (412)
                      ...+..+......+.|+.-.++.++...++.++..-+     .+++|.+..    +.+    +.-..+....+.-+..+.
T Consensus       561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i  635 (2341)
T KOG0891|consen  561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELI  635 (2341)
T ss_pred             hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHH
Confidence            3445677778888899999999999999998766432     223444432    111    111112222222222111


Q ss_pred             cc--cChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh--hHHhhHHHHHHHHhcC-CCchHHHHHHHHhh
Q 015150          173 PI--LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED-RHWRVRLAIIEYIP  247 (412)
Q Consensus       173 ~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~  247 (412)
                      ..  .....+...++-.+...+.|.++.+-..+...++.++...|.+  ...+.+++.+.+.+.| .+..-|.++.++++
T Consensus       636 ~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~  715 (2341)
T KOG0891|consen  636 ISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALG  715 (2341)
T ss_pred             HHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhh
Confidence            10  1111222344455556677888888889999999999888832  3334566666665554 45667788888888


Q ss_pred             HHHhhhCh----hhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Q 015150          248 LLASQLGV----GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKR  287 (412)
Q Consensus       248 ~l~~~~~~----~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~  287 (412)
                      .+....|-    ....+.++..+..-+.. ....+|.++...++.
T Consensus       716 ~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~  760 (2341)
T KOG0891|consen  716 QLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGL  760 (2341)
T ss_pred             hhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence            88776542    22234455554444433 345588888888774

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=1.5  Score=42.45  Aligned_cols=238  Identities=15%  Similarity=0.145  Sum_probs=128.1

Q ss_pred             CChHHHHHHHHHHHHHHH-Hh----hCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHH
Q 015150          116 DNEAEVRIAAAGKVTKIC-RI----LNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFL  189 (412)
Q Consensus       116 d~~~~vr~~a~~~l~~l~-~~----~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  189 (412)
                      |-+.-+++-|+.+-..++ ..    ++-+ .+.+.++|-+. ...+...-.|+.++..++.-...--+......+...+.
T Consensus       454 ~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~l  532 (978)
T KOG1993|consen  454 DLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFL  532 (978)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHH
Confidence            344555655554433322 22    2222 23344555555 22334557788899888877665444555556677788


Q ss_pred             Hhhccc-ChHHHHHHHHHHHHHHHhhc--hhhHH---hhHHHHHHHHhcC-CCchHHHHHHHHhhHHHhhhChhh--HHH
Q 015150          190 SLLKDE-FPDVRLNIISKLDQVNQVIG--IDLLS---QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDD  260 (412)
Q Consensus       190 ~~l~d~-~~~vr~~~~~~l~~i~~~~~--~~~~~---~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~--~~~  260 (412)
                      ++++|+ |-.||.++++.+........  ++.+.   +.+...+.++++. .....|..++..++.+....+...  +..
T Consensus       533 nLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~  612 (978)
T KOG1993|consen  533 NLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS  612 (978)
T ss_pred             HhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            899998 77899999999998876643  33332   2223333333332 334567777777777766655422  122


Q ss_pred             HHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHhChhhh-hhhhHHHHHhhhcCCc-h---HHHHHHHHHHHHhc---cc
Q 015150          261 KLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWA-MQHIVPQVLEMINNPH-Y---LYRMTILQAISLLA---PV  330 (412)
Q Consensus       261 ~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~l~~l~~~~~~~~-~---~~r~~~~~~l~~l~---~~  330 (412)
                      .++..+-.+-  ..+.+-.|.+.+.++..++..+|.+.. ...++=.+.++..|++ +   -.-+-+++.-+.+.   ..
T Consensus       613 ~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~  692 (978)
T KOG1993|consen  613 TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQK  692 (978)
T ss_pred             HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccc
Confidence            2222222221  234566888899999999999986532 2233333444555543 1   12233333333332   22


Q ss_pred             cchhHHHHhhHHHHHhhcCCCCchHH
Q 015150          331 MGSEITCSQLLPVVINASKDRVPNIK  356 (412)
Q Consensus       331 ~~~~~~~~~il~~l~~~l~d~~~~vR  356 (412)
                      +.++  .-.+.|.+...+.-...+.|
T Consensus       693 l~p~--ll~L~p~l~~~iE~ste~L~  716 (978)
T KOG1993|consen  693 LTPE--LLLLFPHLLYIIEQSTENLP  716 (978)
T ss_pred             cCHH--HHHHHHHHHHHHHhhhhhHH
Confidence            3333  23455666555554444444

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=96.04  E-value=1.5  Score=42.13  Aligned_cols=307  Identities=15%  Similarity=0.201  Sum_probs=169.2

Q ss_pred             hccCCChHHHHHHHHHHHHHHHHhCCCCcc-cchHHHHHHhcCCChHHHHHHHHHHHHHHHH-hhCHHHHHHhhhhhH--
Q 015150           74 FSQDKSWRVRYMVANQLYELCEAVGPEPTR-SDVVPAYVRLLRDNEAEVRIAAAGKVTKICR-ILNPELAIQHILPCV--  149 (412)
Q Consensus        74 l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~l--  149 (412)
                      +.+..++.+-..++++++....-.+-.... +..++.+.++++  -.++|.+|+.|+.++.. ...|.+-. .++..+  
T Consensus       201 y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL-~lln~L~q  277 (980)
T KOG2021|consen  201 YENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKL-ALLNMLNQ  277 (980)
T ss_pred             HhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHH
Confidence            334457888889999998888766544432 346788888877  57899999999987654 34443221 122222  


Q ss_pred             -HH----hccC--CcHHHHHHHHHHHHhcCccc-----------ChhH------HHHhhHHHHHHhhcccChHHHHHHHH
Q 015150          150 -KE----LSSD--SSQHVRSALATVIMGMAPIL-----------GKDA------TIEQLLPIFLSLLKDEFPDVRLNIIS  205 (412)
Q Consensus       150 -~~----~~~d--~~~~vr~~~~~~l~~l~~~~-----------~~~~------~~~~l~~~l~~~l~d~~~~vr~~~~~  205 (412)
                       .+    ...|  .+.++-..+.+.+...+..+           ....      ....++|++.+.+.+++.++-.+...
T Consensus       278 ~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifp  357 (980)
T KOG2021|consen  278 TLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFP  357 (980)
T ss_pred             HHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence             11    1122  44555555544444433211           1110      11246788899988888777766666


Q ss_pred             HHHHHHHhhchh---------hHHhhHHHHHHHHh------cCCC----------chHHHHHHHHhhHHHhhhChhhHHH
Q 015150          206 KLDQVNQVIGID---------LLSQSLLPAIVELA------EDRH----------WRVRLAIIEYIPLLASQLGVGFFDD  260 (412)
Q Consensus       206 ~l~~i~~~~~~~---------~~~~~~~~~l~~~~------~d~~----------~~vr~~~~~~l~~l~~~~~~~~~~~  260 (412)
                      -+......+...         .+...+...+.+++      +|.+          ..+|... +.+......+.++.+..
T Consensus       358 Flsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkL-k~fqdti~~idpsl~l~  436 (980)
T KOG2021|consen  358 FLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKL-KNFQDTIVVIDPSLFLN  436 (980)
T ss_pred             HHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHH-HHHHHHHHhcCHHHHHH
Confidence            555544333221         11122223333332      2222          1244433 23333333344554444


Q ss_pred             HHHHHHHHH---hcCchhHHHHHHHHHHHHHHHHhChhhh------------hhhhHHHHHh--hhcCCchHHHHHHHHH
Q 015150          261 KLGALCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDWA------------MQHIVPQVLE--MINNPHYLYRMTILQA  323 (412)
Q Consensus       261 ~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~~l~~l~~--~~~~~~~~~r~~~~~~  323 (412)
                      .+...+-..   ....+|..-+.|+..+-.+.+.+..+.+            ....++.++.  ...+++..+....++.
T Consensus       437 ~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~  516 (980)
T KOG2021|consen  437 NIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMEL  516 (980)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHH
Confidence            444333332   3456777888888877777766543211            1234444442  4556778888888888


Q ss_pred             HHHhccccchhHHHHhhHHHHHhh------cCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhc
Q 015150          324 ISLLAPVMGSEITCSQLLPVVINA------SKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELS  387 (412)
Q Consensus       324 l~~l~~~~~~~~~~~~il~~l~~~------l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~  387 (412)
                      +.+-...++.+   ..-+|.++..      +.+++.+||..+.-....+.+.+...  .+.+.++..+..++
T Consensus       517 ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL  585 (980)
T KOG2021|consen  517 IVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL  585 (980)
T ss_pred             HHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88766555543   2344544443      45668899999998888887765543  23344444444433

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.93  E-value=1.3  Score=40.55  Aligned_cols=251  Identities=11%  Similarity=0.111  Sum_probs=141.2

Q ss_pred             ccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh-CHH-HHHHhhhhh
Q 015150           75 SQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPE-LAIQHILPC  148 (412)
Q Consensus        75 ~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~~~~~  148 (412)
                      ..|++|..-..+-+.|..+......+.    .....+..+..++.++++.-|......+..+-... +.. .+...+...
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            456778877777777777776555433    44567888889999999999999999998865433 322 334444455


Q ss_pred             HHHhcc-CCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccC-hHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150          149 VKELSS-DSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSL  223 (412)
Q Consensus       149 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~~~~~l~~i~~~~~~~~~~~~~  223 (412)
                      +.+.+. +....--..+.+.++.+...+.   ++.....+...+..+.+... ..--.....++..+... + ..+...+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-d-p~l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-D-PSLAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-C-chhHHHH
Confidence            554443 2333334445666666655433   22222233333444444332 22233344455555433 1 2233556


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHH---HHHHHHHHHhcCchhHHHHHHHHHHHH--HHHHhChhhhh
Q 015150          224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLKDKVYSIRDAAANNVKR--LAEEFGPDWAM  298 (412)
Q Consensus       224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~  298 (412)
                      +..+.+.+--.+..-....+..+..+...+++..+..   .+...+..++++++..|-+.|+..+..  +...+..  ..
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~  334 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS  334 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence            6777777776777777778888888888877665543   345556677899999999998876532  1222211  12


Q ss_pred             hhhHHHHHhhh-----cCCchHHHHHHHHHHHHhcc
Q 015150          299 QHIVPQVLEMI-----NNPHYLYRMTILQAISLLAP  329 (412)
Q Consensus       299 ~~~l~~l~~~~-----~~~~~~~r~~~~~~l~~l~~  329 (412)
                      +.++|.+...+     ++.+..+|..+..++..+.+
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~  370 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME  370 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33445444433     24456788888888888765

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.85  E-value=0.058  Score=38.91  Aligned_cols=68  Identities=12%  Similarity=0.119  Sum_probs=45.0

Q ss_pred             HHHHHHHhc-cCCchHHHHHHHHhHHHHhhccCchhh---hhhhHHHHHhhccCCChHHHHHHHHHHHHHHH
Q 015150           28 IMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCE   95 (412)
Q Consensus        28 l~~~l~~l~-~~~~~~~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~   95 (412)
                      ++..+..++ .+.++.+-..||.-++.++++.|....   .-..-..++++++++++.||..|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            555566666 444666677788888888888755311   12255667788888888888888888877654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05536 Neurochondrin: Neurochondrin

Probab=95.80  E-value=1.8  Score=41.17  Aligned_cols=178  Identities=19%  Similarity=0.245  Sum_probs=114.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhhCHH----HHHHhhhhhHHHhccCCcH-HHHHHHHHHHHhcCccc-ChhHHH-HhhHHHHH
Q 015150          117 NEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPIL-GKDATI-EQLLPIFL  189 (412)
Q Consensus       117 ~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~-~~~~~~-~~l~~~l~  189 (412)
                      +....+..|+..|..|+.  .++    +-.-.-+|.+.+.+...+. .+-.-+.+++..++..- |..... ..-+|.+.
T Consensus        69 ~~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~  146 (543)
T PF05536_consen   69 PPEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALC  146 (543)
T ss_pred             CHHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHH
Confidence            345677888888888776  232    2233467888888766555 77777888888877432 333322 34566666


Q ss_pred             HhhcccChHHHHHHHHHHHHHHHhhchhhH------HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--------h
Q 015150          190 SLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--------V  255 (412)
Q Consensus       190 ~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------~  255 (412)
                      +.+.+ .+.....++..+..+....+.+.+      ...+++.+........-..+..++..++.+....+        .
T Consensus       147 ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~  225 (543)
T PF05536_consen  147 EIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPS  225 (543)
T ss_pred             HHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCCh
Confidence            66655 556667777777777665553222      23455556655555555667777777777665552        1


Q ss_pred             hhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhChhhh
Q 015150          256 GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWA  297 (412)
Q Consensus       256 ~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~  297 (412)
                      ..+...+...+...++. ..+.-|..++...+.+.+.+|.+|.
T Consensus       226 ~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl  268 (543)
T PF05536_consen  226 PKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL  268 (543)
T ss_pred             hhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence            23455666666666665 4566899999999999998888764

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.79  E-value=0.3  Score=43.39  Aligned_cols=135  Identities=17%  Similarity=0.238  Sum_probs=74.4

Q ss_pred             HHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCC-------CchHHHHHHHHhhHHHhhh--Chhh
Q 015150          187 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQL--GVGF  257 (412)
Q Consensus       187 ~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~-------~~~vr~~~~~~l~~l~~~~--~~~~  257 (412)
                      .+.+.+.+++...|..++..|.   ...|    ...++|.+..++.+.       +...-...+..+..+...-  .-+.
T Consensus       182 ~It~a~~~~~~~~r~~aL~sL~---tD~g----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~  254 (343)
T cd08050         182 EITEALVGSNEEKRREALQSLR---TDPG----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP  254 (343)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhc---cCCC----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence            3344444555666655544432   2222    245566666554332       2333333333333333221  2244


Q ss_pred             HHHHHHHHHHHHh----------cCchhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCc--hHHHHHHHHH
Q 015150          258 FDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH--YLYRMTILQA  323 (412)
Q Consensus       258 ~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~--~~~r~~~~~~  323 (412)
                      +...++|.++.++          .+..|.+|..|+..++.+++.++..  .+...++..+.+.+.|++  ...+-.++..
T Consensus       255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G  334 (343)
T cd08050         255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG  334 (343)
T ss_pred             hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence            5566788877765          3466889999999999999888764  234556656666666554  3345666666


Q ss_pred             HHHhc
Q 015150          324 ISLLA  328 (412)
Q Consensus       324 l~~l~  328 (412)
                      +..+.
T Consensus       335 L~~lG  339 (343)
T cd08050         335 LSALG  339 (343)
T ss_pred             HHHhC
Confidence            66553

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.69  E-value=1.7  Score=40.02  Aligned_cols=217  Identities=12%  Similarity=0.165  Sum_probs=116.6

Q ss_pred             CCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCC------CcccchHH
Q 015150           38 DDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE------PTRSDVVP  108 (412)
Q Consensus        38 ~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~  108 (412)
                      .+|+.+=++.++.+...-+...+  ......+...+...+++ ++|..-+...++++.+.+.....      .+.+.++|
T Consensus        41 ~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   41 AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            44554544555555554444433  23445566666666666 46889999999999998875532      23567899


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHH---HHHHHHHhcCcccCh----hHHH
Q 015150          109 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS---ALATVIMGMAPILGK----DATI  181 (412)
Q Consensus       109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~---~~~~~l~~l~~~~~~----~~~~  181 (412)
                      .+...+...-.+.--.+++.+..+.+..+.....+.....+..++...-|+-|.   +.+..+..+...-+.    ....
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l  200 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQL  200 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhH
Confidence            999988876666677778888888877663323233333333344433443222   122222222211111    1223


Q ss_pred             HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHH---hhHHHHHH-HHhcCCCchHHHHHHHHhhHHHhhhChh
Q 015150          182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGVG  256 (412)
Q Consensus       182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~---~~~~~~l~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~  256 (412)
                      +.++..+.+++.....+  ..+..-|..+...++.+.+.   +.++..+. ++-+.+.++....++..++.++...|..
T Consensus       201 ~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~  277 (435)
T PF03378_consen  201 EPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD  277 (435)
T ss_dssp             HHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence            46677777888765433  23667788888887765542   23333333 3334556666666666666665555554

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.67  E-value=2.1  Score=40.87  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=82.8

Q ss_pred             HHHhhccCCChHHHHHHHHHHHHHHHHhCCCC--------cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-H
Q 015150           70 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--------TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-L  140 (412)
Q Consensus        70 ~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~  140 (412)
                      .+..++.+.+...|-..++.+++++..+..+.        ..+.++..+.+.+.|.++.+|..|+..+..+...-..- .
T Consensus       303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~  382 (1128)
T COG5098         303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVG  382 (1128)
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccc
Confidence            45567888899999999999999998876554        22468888899999999999999999999887643222 1


Q ss_pred             HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC
Q 015150          141 AIQHILPCVKELSSDSSQHVRSALATVIMGMA  172 (412)
Q Consensus       141 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~  172 (412)
                      -.+.+...+...++|.+..||+.++..+..+.
T Consensus       383 ~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL  414 (1128)
T COG5098         383 RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL  414 (1128)
T ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            23457788888999999999999999888764

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=95.66  E-value=0.6  Score=37.68  Aligned_cols=160  Identities=15%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             HHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHH
Q 015150          242 IIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMT  319 (412)
Q Consensus       242 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~  319 (412)
                      +...++.+...+|...  ....++..+-++-.+++...|.++-.+++..++.+|++.+.+ ++|.-... .+....-|.-
T Consensus        20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~raW   97 (198)
T PF08161_consen   20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPGRAW   97 (198)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCcccch
Confidence            3344444444444321  122233344455556667788999999999999999886654 44533322 1111222333


Q ss_pred             HHHHHHHhccccchhHHHHhhHHHHHhhcC------CCCchHHHHHHHHH--------HHHhhhh-ch-HHHHhhHHHHH
Q 015150          320 ILQAISLLAPVMGSEITCSQLLPVVINASK------DRVPNIKFNVAKVL--------QSLIPIV-DQ-SVVEKSIRPCL  383 (412)
Q Consensus       320 ~~~~l~~l~~~~~~~~~~~~il~~l~~~l~------d~~~~vR~~~~~~l--------~~l~~~~-~~-~~~~~~i~~~l  383 (412)
                      .+-.+..-.....-.+|.++++|....+-+      .....+-....+++        ..++..- +. +.| ..+-+.|
T Consensus        98 LLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-~~~a~~L  176 (198)
T PF08161_consen   98 LLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-PSFAKLL  176 (198)
T ss_pred             hHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-HHHHHHH
Confidence            344444433333445778888886544321      12222222222222        2222110 11 123 5667777


Q ss_pred             HhhcCCCCccHHHHHHHHHHHh
Q 015150          384 VELSEDPDVDVRFFATQALQSK  405 (412)
Q Consensus       384 ~~l~~d~~~~vr~~a~~al~~~  405 (412)
                      .+.+.|. ++.|...+.|+..+
T Consensus       177 ~~~L~~~-~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  177 GNALYDQ-PDLRPIICQALRRL  197 (198)
T ss_pred             HHHHhcC-cchHHHHHHHHHHH
Confidence            7777775 89999999998875

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.66  E-value=0.63  Score=36.48  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh---hhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh
Q 015150          259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      .+.+..-+.++++++++.-|..++..++..++..+.+.+.   ...+..+...++.++ ..++..++.++..+....+..
T Consensus        23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3445556666777777777777777777777665554442   345555555555443 456677777777665433321


Q ss_pred             ---------HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch
Q 015150          335 ---------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       335 ---------~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~  372 (412)
                               +....+++.+++.+++  ..+...++.++..+...+..
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence                     1233455566666665  45666777777777665443

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.51  E-value=0.8  Score=35.00  Aligned_cols=141  Identities=19%  Similarity=0.197  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHH
Q 015150           80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH  159 (412)
Q Consensus        80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~  159 (412)
                      +-||...+.++..++....++. ++++++.+.+.++. ++......+..|..+.+.+..          ..  -.+.+..
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~----------~~--~~~~~~~   67 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD----------FR--RSSLSQE   67 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT----------SH--CCHSHHH
T ss_pred             hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh----------hh--chhhhHH
Confidence            3578888899999988776554 67788888888777 355666666666655442211          00  0111222


Q ss_pred             HHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccC----hHHHHHHHHHHHHHHHhhchhhHHh-hHHHHHHHHhcCC
Q 015150          160 VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQ-SLLPAIVELAEDR  234 (412)
Q Consensus       160 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~----~~vr~~~~~~l~~i~~~~~~~~~~~-~~~~~l~~~~~d~  234 (412)
                      .|...-..+..-         ...++..+.+.+....    .++...+++++..+....+.+.+.+ .+++.+.+++.++
T Consensus        68 r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~  138 (148)
T PF08389_consen   68 RRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP  138 (148)
T ss_dssp             HHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence            233333333222         2345555555554432    7788888888888887766555433 4777777777444


Q ss_pred             CchHHHHHHHH
Q 015150          235 HWRVRLAIIEY  245 (412)
Q Consensus       235 ~~~vr~~~~~~  245 (412)
                      +  .+..++++
T Consensus       139 ~--~~~~A~~c  147 (148)
T PF08389_consen  139 E--LREAAAEC  147 (148)
T ss_dssp             C--CHHHHHHH
T ss_pred             H--HHHHHHHh
Confidence            3  36666554

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.50  E-value=1.8  Score=38.97  Aligned_cols=221  Identities=16%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             hhhhHHHhccCCcHHHHHHHHHHHHhcCcccC-hhHHHHhhHHHH-H-Hhhcc-cChHHHHHHHHHHHHHHHhh-chhhH
Q 015150          145 ILPCVKELSSDSSQHVRSALATVIMGMAPILG-KDATIEQLLPIF-L-SLLKD-EFPDVRLNIISKLDQVNQVI-GIDLL  219 (412)
Q Consensus       145 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l-~-~~l~d-~~~~vr~~~~~~l~~i~~~~-~~~~~  219 (412)
                      ..+.+..++-+++..||.++...+-.+..... -....+.=++.+ . .+-+| ....-|..|++-+-.+...- |.+.+
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~  105 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI  105 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence            33444433333338888888777755442211 011111111222 2 22233 24566788888888887763 34555


Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----  295 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----  295 (412)
                      ...+...+..+.++++.+.|..+++.+.+++-.-+.-.....-+..+.+.+.|+..++-+..+.++-.+...-...    
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~  185 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR  185 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence            6678888888999999999999999998887654332222223455566666665555555555555544322111    


Q ss_pred             --hhhhhhHHHHHhh----hcCCch-HHHHHHHHHHHHhcc-ccc-----hhHHHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150          296 --WAMQHIVPQVLEM----INNPHY-LYRMTILQAISLLAP-VMG-----SEITCSQLLPVVINASKDRVPNIKFNVAKV  362 (412)
Q Consensus       296 --~~~~~~l~~l~~~----~~~~~~-~~r~~~~~~l~~l~~-~~~-----~~~~~~~il~~l~~~l~d~~~~vR~~~~~~  362 (412)
                        .-.+.++..+.+.    .++... ..-.++..++..+.. +-|     .+.+  .-+..++..+.-|.+.+|...+..
T Consensus       186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildl  263 (371)
T PF14664_consen  186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDL  263 (371)
T ss_pred             CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHH
Confidence              1123344444443    122221 123344444444432 222     1111  456667888888899999999998


Q ss_pred             HHHHh
Q 015150          363 LQSLI  367 (412)
Q Consensus       363 l~~l~  367 (412)
                      +..+.
T Consensus       264 l~dll  268 (371)
T PF14664_consen  264 LFDLL  268 (371)
T ss_pred             HHHHH
Confidence            88774

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.48  E-value=3.6  Score=46.85  Aligned_cols=281  Identities=14%  Similarity=0.138  Sum_probs=159.4

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhh----C-HH-----HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL----N-PE-----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  174 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~-~~-----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  174 (412)
                      .+++.+.+.+..++.+++..+..++..+....    + ++     +....+++.+.+++.|+.|.-|...+..++.+...
T Consensus       984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen  984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence            47888999999999999999999998775532    2 11     45667888888899999999999998888877766


Q ss_pred             cChhHHH---HhhHHHHHHhhcccChHH--------HHHHHHHHHHHHHhhchh----hHHhhHHHHHHHHhcCCCchHH
Q 015150          175 LGKDATI---EQLLPIFLSLLKDEFPDV--------RLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVR  239 (412)
Q Consensus       175 ~~~~~~~---~~l~~~l~~~l~d~~~~v--------r~~~~~~l~~i~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr  239 (412)
                      +......   ..++..+.-.+.|...++        +.....-+..+......+    .....++..+..-+.+++..||
T Consensus      1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred             chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            6533222   233444444455432222        212222222222222211    1224455556666788889999


Q ss_pred             HHHHHHhhHHHhhhChhhH--H----HHH-HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh--------hhhHHH
Q 015150          240 LAIIEYIPLLASQLGVGFF--D----DKL-GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--------QHIVPQ  304 (412)
Q Consensus       240 ~~~~~~l~~l~~~~~~~~~--~----~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--------~~~l~~  304 (412)
                      ..+.+.+..+++..|.+..  .    +.+ .|++..-+..-...+...-+.+...++. .+++.+.        ...+..
T Consensus      1144 ~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~-l~p~~f~~~~~l~~l~~~~~~ 1222 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS-LGPCLFDFTEELYRLKRFLIA 1222 (3550)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH-cCCcccCchHHHHHHHHHHHH
Confidence            9999999999998865421  1    111 2222222232222233333333222222 2332110        001111


Q ss_pred             -----------HHhhhcCC----chHHHHHHHHHHHHhccccch-----hHHHHhhHHHHHhhcCCCCchHHHHHHHHHH
Q 015150          305 -----------VLEMINNP----HYLYRMTILQAISLLAPVMGS-----EITCSQLLPVVINASKDRVPNIKFNVAKVLQ  364 (412)
Q Consensus       305 -----------l~~~~~~~----~~~~r~~~~~~l~~l~~~~~~-----~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~  364 (412)
                                 +.+....+    .-..|.++++.+........-     ..+.++++-.+++.+..+.+++-..+...+.
T Consensus      1223 La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~ 1302 (3550)
T KOG0889|consen 1223 LADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLR 1302 (3550)
T ss_pred             hhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence                       11111111    134688888888776543322     2467888889999988888888888887776


Q ss_pred             HHhhh---hchHHHHhhHHHHHHhh
Q 015150          365 SLIPI---VDQSVVEKSIRPCLVEL  386 (412)
Q Consensus       365 ~l~~~---~~~~~~~~~i~~~l~~l  386 (412)
                      .....   ++.+.....+-|.+..+
T Consensus      1303 ~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1303 KVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred             hhhhccccccHHHHHhhHHHHHHhh
Confidence            66432   33333444444555555

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=95.48  E-value=0.27  Score=37.35  Aligned_cols=98  Identities=14%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  306 (412)
                      +..++|..-..++..+..=  ..|+    ...+..+.+.+.+.++.|...|+..+..++++.|..+.    ...++..+.
T Consensus        13 l~~~dw~~il~icD~I~~~--~~~~----k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~   86 (144)
T cd03568          13 LTSENWGLILDVCDKVKSD--ENGA----KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK   86 (144)
T ss_pred             CCCcCHHHHHHHHHHHhcC--CccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence            3456777666666555421  1222    33566677778889999999999999999999987654    356777777


Q ss_pred             hhhcC-CchHHHHHHHHHHHHhccccchh
Q 015150          307 EMINN-PHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       307 ~~~~~-~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      .++.+ .+..|+..++..+...+..+..+
T Consensus        87 kl~~~~~~~~Vk~kil~li~~W~~~f~~~  115 (144)
T cd03568          87 KLINDRVHPTVKEKLREVVKQWADEFKND  115 (144)
T ss_pred             HHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            77777 56778888888888877666543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.31  E-value=2.3  Score=39.16  Aligned_cols=215  Identities=9%  Similarity=0.083  Sum_probs=102.9

Q ss_pred             CcHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhccc-ChHHHHHHHHHHHHHHHhhc---hh---hHHhhHHHH
Q 015150          156 SSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG---ID---LLSQSLLPA  226 (412)
Q Consensus       156 ~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~i~~~~~---~~---~~~~~~~~~  226 (412)
                      +|+.+-+++.+.+..+.+...+-  ...+.+...+...++++ +|.--.....+++.+.+...   ++   .+.+.++|.
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~  121 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP  121 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence            34444444555444443332221  12244555555555554 45555566666666666543   22   355677888


Q ss_pred             HHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHH---HHHHHHHHHHHHHhChhh----hhh
Q 015150          227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR---DAAANNVKRLAEEFGPDW----AMQ  299 (412)
Q Consensus       227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr---~~a~~~l~~l~~~~~~~~----~~~  299 (412)
                      +...+..+-.+.--.+.+.++.+.+........+....++-.++...-|+-+   -+..+.|..+++.-+...    ...
T Consensus       122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~  201 (435)
T PF03378_consen  122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLE  201 (435)
T ss_dssp             HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHH
Confidence            8877766544444445556666665554111111122222222333333311   223333444443332221    123


Q ss_pred             hhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhch
Q 015150          300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       300 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~  372 (412)
                      .++..+.+++.++...  ..+.+.+..+...++.+   .|...++..++..++ .+.++.++..+..++.++-..|+
T Consensus       202 ~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~  276 (435)
T PF03378_consen  202 PILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGP  276 (435)
T ss_dssp             HHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCH
Confidence            4556666666665422  33667777777777765   466677777777765 44556666666666655554454

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=95.27  E-value=3.1  Score=40.26  Aligned_cols=367  Identities=14%  Similarity=0.134  Sum_probs=193.4

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhh-----hhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCc-
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA-----HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-  102 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-----~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~-  102 (412)
                      +|-...++.+.++.+...|+.-+..++..  ++..+.     .=++.+..++.++..+|+..+|-+|.++...-..+.. 
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            34445566666666665555555555433  222222     2567788899999999999999999999864333111 


Q ss_pred             ----ccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHh--hCHHHHHHhhhhhHHHh-c------c--CC-----cHHHH
Q 015150          103 ----RSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKEL-S------S--DS-----SQHVR  161 (412)
Q Consensus       103 ----~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~-~------~--d~-----~~~vr  161 (412)
                          ...=+|.+.+++.. .|.+||+...-.|.++..+  +....+ ..-+..+... +      .  +.     ...|-
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceee
Confidence                12235666666653 5678999888888777665  211111 1111222111 0      0  11     12344


Q ss_pred             HHHHHHHHhcCcccCh--h------HHHHhhHHHHHHhhcc---cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH
Q 015150          162 SALATVIMGMAPILGK--D------ATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  230 (412)
Q Consensus       162 ~~~~~~l~~l~~~~~~--~------~~~~~l~~~l~~~l~d---~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~  230 (412)
                      ..+..+|.++...-..  +      ...+.|+-.+...+..   ++..|. ++...+-.+..-+..+     +.+.....
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VE-NcvCilRNLSYrl~~E-----vp~~~~~~  465 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVE-NCVCILRNLSYRLEAE-----VPPKYRQV  465 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHH-HHHHHHhhcCchhhhh-----cCHhhhhH
Confidence            4455556555432100  0      0112333333333322   122232 2222222222111111     11111111


Q ss_pred             hcC-------CCchHHHHHHHHhhHHHhh---------h--------Chh-hHHHHHHHHHHHHhcC-chhHHHHHHHHH
Q 015150          231 AED-------RHWRVRLAIIEYIPLLASQ---------L--------GVG-FFDDKLGALCMQWLKD-KVYSIRDAAANN  284 (412)
Q Consensus       231 ~~d-------~~~~vr~~~~~~l~~l~~~---------~--------~~~-~~~~~l~~~l~~~l~d-~~~~vr~~a~~~  284 (412)
                      ...       ..+.   ....+++.-.+.         +        |.+ .+.+.++..+..++.. .+..+.++++.+
T Consensus       466 ~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGa  542 (717)
T KOG1048|consen  466 LANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGA  542 (717)
T ss_pred             hhcccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhh
Confidence            110       0011   111222222211         0        111 2346677776666653 456788888888


Q ss_pred             HHHHHHHhCh-------hh-hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCc--
Q 015150          285 VKRLAEEFGP-------DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVP--  353 (412)
Q Consensus       285 l~~l~~~~~~-------~~-~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~--  353 (412)
                      |..+.-..+.       .. ..+..+|.+.+++...+..+-.+++.++..++-..... -+..+.+|.|+..|.+..+  
T Consensus       543 LQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~  622 (717)
T KOG1048|consen  543 LQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPST  622 (717)
T ss_pred             HhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCc
Confidence            8776643221       11 24567899999999999899999999999997544433 3556889999999887654  


Q ss_pred             ----hHHHHHHHHHHHHh-hhhch--HHHHhhHHHHHHhhcCCC-CccHHHHHHHHHHHhHH
Q 015150          354 ----NIKFNVAKVLQSLI-PIVDQ--SVVEKSIRPCLVELSEDP-DVDVRFFATQALQSKDQ  407 (412)
Q Consensus       354 ----~vR~~~~~~l~~l~-~~~~~--~~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~~~~  407 (412)
                          .+-..++.++.++. +.+..  +.+...-++.|..+.... ++++-+.|...+..+.+
T Consensus       623 ~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  623 SLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             CchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence                45567777777776 22222  234445566666544333 33666677777766654

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.20  E-value=0.13  Score=39.89  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=75.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---h-hhhhhhHHHHHhhcc
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---Q-DCVAHILPVIVNFSQ   76 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~-~~~~~l~~~l~~l~~   76 (412)
                      ++.+|..+.-++..+... .++.+.+.+..++.....+....-...+..++..+.+..++   + ...+.+.+.+..+..
T Consensus        18 ~~~~r~~a~v~l~k~l~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~   96 (157)
T PF11701_consen   18 PEEVRSHALVILSKLLDA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS   96 (157)
T ss_dssp             SCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence            467888888888887533 33455666667776666555444444555666665554332   1 123346666666655


Q ss_pred             --CCChHHHHHHHHHHHHHHHHhC-CCCcccchHHHHHHhcC-CChHH-HHHHHHHHHHH
Q 015150           77 --DKSWRVRYMVANQLYELCEAVG-PEPTRSDVVPAYVRLLR-DNEAE-VRIAAAGKVTK  131 (412)
Q Consensus        77 --d~~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~-d~~~~-vr~~a~~~l~~  131 (412)
                        .++..+...+++.|..-+-.-. ......+.++.+.+.++ ++++. +|..|+-.|.+
T Consensus        97 ~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   97 RKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             -CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence              5667777777777755432110 11233566778888874 55555 77777766654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.08  E-value=1.3  Score=34.78  Aligned_cols=111  Identities=16%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH---HHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhChh-
Q 015150          221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD-  295 (412)
Q Consensus       221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~-  295 (412)
                      +.+...+..++.++++.-|-.++..++.+++..|.+.+.   ..++..+++.++.+ ...+++.++.++..+....... 
T Consensus        24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            556666777778877888877777777777776655542   34555566666553 3457888888888887765421 


Q ss_pred             h-h-------hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150          296 W-A-------MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       296 ~-~-------~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      . .       ...+++.+.++.++  ......++.++..+....+.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            1 1       12344445555554  34556777777776654443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.98  E-value=1.5  Score=35.18  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=53.0

Q ss_pred             hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh
Q 015150           65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL  136 (412)
Q Consensus        65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  136 (412)
                      +..++-+++++.+++..+|..+++.+..+.+..-.  .+.+.+|.+..+..|+++.+|..|...+..+.+..
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence            44566677788888888898888888877763211  23567888888888999999999988888876644

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.97  E-value=1.6  Score=44.89  Aligned_cols=209  Identities=18%  Similarity=0.240  Sum_probs=121.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhccCC---chHHHHHHHHhHHHHhhccC---chhhhhhhHHHHHhh
Q 015150            3 MVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDD---QDSVRLLAVEGCGALGKLLE---PQDCVAHILPVIVNF   74 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~~~---~~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~l   74 (412)
                      +||....+++-.+....+..  +-|..+...+.......   .-.+-+.+..++..+...+-   |......++..+..+
T Consensus       857 evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~f  936 (1610)
T KOG1848|consen  857 EVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVF  936 (1610)
T ss_pred             eeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHH
Confidence            46777777777777765532  12666777766555433   33344455566666554431   234555566666655


Q ss_pred             cc-CCChHHHHHHHHHHHHHHHHhCC-----------------------------CCcccchHHHHHHhcCCChHHHHHH
Q 015150           75 SQ-DKSWRVRYMVANQLYELCEAVGP-----------------------------EPTRSDVVPAYVRLLRDNEAEVRIA  124 (412)
Q Consensus        75 ~~-d~~~~vR~~~~~~l~~l~~~~~~-----------------------------~~~~~~l~~~l~~~l~d~~~~vr~~  124 (412)
                      +. ..|..+-..++-.+=.+.+.+..                             +..|-.++..+.++++|.-++||..
T Consensus       937 s~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRng 1016 (1610)
T KOG1848|consen  937 SRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNG 1016 (1610)
T ss_pred             HhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhh
Confidence            43 34555555555444333332210                             1112246667788999999999999


Q ss_pred             HHHHHHHHHHh----hCHHHHHHhhhhhHHHhccC------Cc---HHH----HHHHHHHHHhcCcccChhH--------
Q 015150          125 AAGKVTKICRI----LNPELAIQHILPCVKELSSD------SS---QHV----RSALATVIMGMAPILGKDA--------  179 (412)
Q Consensus       125 a~~~l~~l~~~----~~~~~~~~~~~~~l~~~~~d------~~---~~v----r~~~~~~l~~l~~~~~~~~--------  179 (412)
                      |++.+.++...    +++.-|..-++..+..++..      ++   .++    -...+-.++.++..+....        
T Consensus      1017 Avqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~llnln~ 1096 (1610)
T KOG1848|consen 1017 AVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNG 1096 (1610)
T ss_pred             HHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            99999887654    34444444444444444320      11   111    1234555566655443321        


Q ss_pred             ---HHHhhHHHHHHhhcccChHHHHHHHHHHHHHH
Q 015150          180 ---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  211 (412)
Q Consensus       180 ---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~  211 (412)
                         .-+.++.++..+..|.++++..++++++..+.
T Consensus      1097 f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1097 FLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             HHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence               12567778888888999999999999988764

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.89  E-value=0.89  Score=40.45  Aligned_cols=133  Identities=14%  Similarity=0.277  Sum_probs=81.4

Q ss_pred             HHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhccc-------ChHHHHHHHHHHHHHHHh--hchhhH
Q 015150          149 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE-------FPDVRLNIISKLDQVNQV--IGIDLL  219 (412)
Q Consensus       149 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-------~~~vr~~~~~~l~~i~~~--~~~~~~  219 (412)
                      +.+.+.+.+...|..+...+..       +.....|+|+|..++.+.       +-..-...++....+...  +.-+.+
T Consensus       183 It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Y  255 (343)
T cd08050         183 ITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPY  255 (343)
T ss_pred             HHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHh
Confidence            3334445667777777665432       222458889998887653       122222233333333322  223455


Q ss_pred             HhhHHHHHHHHh----------cCCCchHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHHHhcCchhH--HHHHHHHHH
Q 015150          220 SQSLLPAIVELA----------EDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYS--IRDAAANNV  285 (412)
Q Consensus       220 ~~~~~~~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~--vr~~a~~~l  285 (412)
                      ...++|.++.++          .+.+|.+|..++..+..++..++..  .+.+.+...+.+.+.|+...  ....|+..|
T Consensus       256 lh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL  335 (343)
T cd08050         256 LHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGL  335 (343)
T ss_pred             HHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Confidence            677888877654          3567999999999999999998764  34566666677766665433  366666666


Q ss_pred             HHH
Q 015150          286 KRL  288 (412)
Q Consensus       286 ~~l  288 (412)
                      ..+
T Consensus       336 ~~l  338 (343)
T cd08050         336 SAL  338 (343)
T ss_pred             HHh
Confidence            543

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.84  E-value=2.6  Score=37.13  Aligned_cols=172  Identities=17%  Similarity=0.163  Sum_probs=94.0

Q ss_pred             HHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH--HHHHHHHHHHhcC----chhHHHHHHHHHHHHHHHHhCh--hh
Q 015150          225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGP--DW  296 (412)
Q Consensus       225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~--~~  296 (412)
                      ..+.++++.+++.++..++..+..+....+.....  ...++.+++++.+    ++.+++..++.+++.++..-..  .+
T Consensus       108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f  187 (312)
T PF03224_consen  108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF  187 (312)
T ss_dssp             HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence            33444777778888888888888887665443222  2455666665553    5566778888888888753221  12


Q ss_pred             hhhhhHHHHHhhh-----cC--CchHHHHHHHHHHHHhccc--cchhHHHHhhHHHHHhhcCCC-CchHHHHHHHHHHHH
Q 015150          297 AMQHIVPQVLEMI-----NN--PHYLYRMTILQAISLLAPV--MGSEITCSQLLPVVINASKDR-VPNIKFNVAKVLQSL  366 (412)
Q Consensus       297 ~~~~~l~~l~~~~-----~~--~~~~~r~~~~~~l~~l~~~--~~~~~~~~~il~~l~~~l~d~-~~~vR~~~~~~l~~l  366 (412)
                      .....++.+...+     .+  .+.++...++.++-.++-.  .-.+.....++|.+.+.+++. ..+|-+.++.++.++
T Consensus       188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl  267 (312)
T PF03224_consen  188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL  267 (312)
T ss_dssp             HTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred             HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            2345566666666     22  2355666666666655421  111223345888888887654 345555667777777


Q ss_pred             hhhhch----HHHHhhHHHHHHhhcCC--CCccHHH
Q 015150          367 IPIVDQ----SVVEKSIRPCLVELSED--PDVDVRF  396 (412)
Q Consensus       367 ~~~~~~----~~~~~~i~~~l~~l~~d--~~~~vr~  396 (412)
                      ...-..    ......+++.+..+...  .|+|+..
T Consensus       268 ~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  268 LSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE  303 (312)
T ss_dssp             TSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred             HhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence            654432    23445677777776533  4445443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.80  E-value=2.5  Score=36.80  Aligned_cols=125  Identities=11%  Similarity=0.143  Sum_probs=63.9

Q ss_pred             hHHHHHHHHhhHHHhhhChhhHHHHH---HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh---hhhHHHHHhhhc
Q 015150          237 RVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMIN  310 (412)
Q Consensus       237 ~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~~~  310 (412)
                      .|...+++....+.+.+|.+.+...+   .|-++.++......||-..+..+....-.+|. .+.   ..++..++..+.
T Consensus        70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLe  148 (307)
T PF04118_consen   70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLE  148 (307)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccc
Confidence            45555555555666666555554432   34455555555555555555555555544444 221   223333444445


Q ss_pred             CCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          311 NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       311 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      |++...-..+...+..+...++.+.|+..++-.+.     .+|.+|..++..+..-.
T Consensus       149 de~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l  200 (307)
T PF04118_consen  149 DEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRL  200 (307)
T ss_pred             cCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhC
Confidence            55555555556666666555555544444444433     34455555555544433

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=94.58  E-value=0.045  Score=31.37  Aligned_cols=25  Identities=44%  Similarity=0.466  Sum_probs=13.8

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHH
Q 015150          104 SDVVPAYVRLLRDNEAEVRIAAAGK  128 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~~vr~~a~~~  128 (412)
                      +.+...+...+.|+++.||.+|++.
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            3455555555566666666655543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.54  E-value=0.59  Score=36.28  Aligned_cols=126  Identities=16%  Similarity=0.133  Sum_probs=70.3

Q ss_pred             CChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc---ChhHH-HHhhHHHHHHh
Q 015150          116 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL---GKDAT-IEQLLPIFLSL  191 (412)
Q Consensus       116 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~-~~~l~~~l~~~  191 (412)
                      ...+++|..+.-++.++.+ ..++.+.+.+-.++...+.+.+..-...++.++..+.+..   |...+ .+.+.+.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            3456789999888888753 2334455666677766665444334444555555554332   22221 24566666666


Q ss_pred             hc--ccChHHHHHHHHHHHHHHHhhc-hhhHHhhHHHHHHHHhc-CCCch-HHHHH
Q 015150          192 LK--DEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAE-DRHWR-VRLAI  242 (412)
Q Consensus       192 l~--d~~~~vr~~~~~~l~~i~~~~~-~~~~~~~~~~~l~~~~~-d~~~~-vr~~~  242 (412)
                      +.  .++..+...+++.+..-+..-. ...+.++.++.+.+..+ +++.. +|..+
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A  150 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLA  150 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHH
Confidence            66  5567777777777766543322 23344566777777774 33333 44433

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.45  E-value=1.9  Score=39.87  Aligned_cols=136  Identities=15%  Similarity=0.190  Sum_probs=83.6

Q ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchH---H-HHHHHHhhHHHhhh------Ch
Q 015150          186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV---R-LAIIEYIPLLASQL------GV  255 (412)
Q Consensus       186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~v---r-~~~~~~l~~l~~~~------~~  255 (412)
                      .-+.+.+...++..|..|++.|..=   -|    .+.++|.+..++.+.-..-   + ...+..+..+...+      --
T Consensus       210 ~~It~a~~g~~~~~r~eAL~sL~TD---sG----L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~l  282 (576)
T KOG2549|consen  210 KEITEACTGSDEPLRQEALQSLETD---SG----LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFL  282 (576)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhhccC---cc----HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccch
Confidence            3344455556777887776665432   22    2556777776655431110   1 11222233333332      12


Q ss_pred             hhHHHHHHHHHHHHh----------cCchhHHHHHHHHHHHHHHHHhChhh--hhhhhHHHHHhhhcCCc--hHHHHHHH
Q 015150          256 GFFDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTIL  321 (412)
Q Consensus       256 ~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~--~~~r~~~~  321 (412)
                      +.+..+++|-++.++          .|..|.+|.-|+..+..+++.++..+  +...++..+.+.+.|+.  +.....++
T Consensus       283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai  362 (576)
T KOG2549|consen  283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAI  362 (576)
T ss_pred             hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHH
Confidence            335567888877764          36789999999999999999987642  44567777777777763  77777787


Q ss_pred             HHHHHhc
Q 015150          322 QAISLLA  328 (412)
Q Consensus       322 ~~l~~l~  328 (412)
                      ..|..+.
T Consensus       363 ~gL~~lg  369 (576)
T KOG2549|consen  363 AGLSELG  369 (576)
T ss_pred             HHHHHhh
Confidence            7777764

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.36  E-value=0.68  Score=40.95  Aligned_cols=108  Identities=21%  Similarity=0.243  Sum_probs=81.4

Q ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhh
Q 015150          266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQL  340 (412)
Q Consensus       266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~i  340 (412)
                      ++..++.-+..||..|+..+..+.......  .....+++.+.....|.+..+|.+..+.+..+......+   .+..-+
T Consensus        63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~  142 (393)
T KOG2149|consen   63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL  142 (393)
T ss_pred             HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence            345578888889999998888888763221  123457777778888888889999988888866555443   356677


Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150          341 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  373 (412)
Q Consensus       341 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  373 (412)
                      +|.+....+...+.+|.-+++.+..+...+++.
T Consensus       143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            888888888888999999999998888877664

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=94.36  E-value=0.26  Score=34.17  Aligned_cols=69  Identities=22%  Similarity=0.362  Sum_probs=46.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150          272 DKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEITCSQLLPVV  344 (412)
Q Consensus       272 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l  344 (412)
                      |++|.+|+.|++.++.++..++..  .+...+...+.+.+.|++  ...+-.++..+..+    |.+.+..-++|.+
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l   89 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL   89 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence            567888888888888888888753  345667777777777654  55666777776665    4454444555543

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=94.32  E-value=3.8  Score=36.84  Aligned_cols=147  Identities=11%  Similarity=0.112  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC------hhhhhhhhHHHHHh-hhcCCchHHHHHHHHHHHHhccccc
Q 015150          260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG------PDWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMG  332 (412)
Q Consensus       260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~l~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~  332 (412)
                      ++++..+..++.+.+.+....+.-+++.+++.=.      ...+.+.++..+.+ .-.|.+-++.-+++.++..+.--.+
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            4577888888998899988888889998876321      12234445555554 3446677788899999998863222


Q ss_pred             hh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc---hHH-HHhhHHHHHHhhcCCCCcc-HHHHHHHHHHHh
Q 015150          333 SE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QSV-VEKSIRPCLVELSEDPDVD-VRFFATQALQSK  405 (412)
Q Consensus       333 ~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~~~-~~~~i~~~l~~l~~d~~~~-vr~~a~~al~~~  405 (412)
                      .+  +...-+...++..++-..|.|....+.++.-+....+   .+- -....+..|..-.+.||-. |-....+.+..+
T Consensus       394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~l  473 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGL  473 (604)
T ss_pred             chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHH
Confidence            22  2222344455555566666666555555443322111   000 0133444555545555554 444444444433


Q ss_pred             H
Q 015150          406 D  406 (412)
Q Consensus       406 ~  406 (412)
                      .
T Consensus       474 I  474 (604)
T KOG4500|consen  474 I  474 (604)
T ss_pred             H
Confidence            3

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.27  E-value=8.4  Score=40.57  Aligned_cols=239  Identities=14%  Similarity=0.154  Sum_probs=128.9

Q ss_pred             HHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc---chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhh
Q 015150           71 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS---DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHI  145 (412)
Q Consensus        71 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~  145 (412)
                      +.+-+.-.|+..|.-+.+.++.+......+....   ...-.+.+++.|++..||......+..+...+...  ++.+.+
T Consensus        46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l  125 (1312)
T KOG0803|consen   46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL  125 (1312)
T ss_pred             HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence            3344444567777777888877776655443322   23334556778888888888888888877766554  556667


Q ss_pred             hhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHH----HHhhHHHHHHhh--------cc-----------cChHHHHH
Q 015150          146 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLL--------KD-----------EFPDVRLN  202 (412)
Q Consensus       146 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l--------~d-----------~~~~vr~~  202 (412)
                      +|...-...|....|-.++-..+......-.....    ...+.+...+.+        .|           ....|-..
T Consensus       126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s  205 (1312)
T KOG0803|consen  126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS  205 (1312)
T ss_pred             hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence            77776666777777777776666554431111110    123333333321        11           01223334


Q ss_pred             HHHHHHHHHHhhchhhHHhhH---------HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHh
Q 015150          203 IISKLDQVNQVIGIDLLSQSL---------LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWL  270 (412)
Q Consensus       203 ~~~~l~~i~~~~~~~~~~~~~---------~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l  270 (412)
                      ++..+..+....|.+.-....         ...+-++.+++.+.+|.+..+.+..+...+..-   .-...+.|.+....
T Consensus       206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~  285 (1312)
T KOG0803|consen  206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSI  285 (1312)
T ss_pred             HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccc
Confidence            445555555444432211111         123445678899999999988887777655332   12344666666655


Q ss_pred             cCchhHHHHHHHHHHHHHHHHhChhhh------hhhhHHHHHhhhc
Q 015150          271 KDKVYSIRDAAANNVKRLAEEFGPDWA------MQHIVPQVLEMIN  310 (412)
Q Consensus       271 ~d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~~l~~l~~~~~  310 (412)
                      .+.+ -|--.....+......+...++      .+.++|.+.++.+
T Consensus       286 ~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir  330 (1312)
T KOG0803|consen  286 DSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR  330 (1312)
T ss_pred             cccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence            5554 3333333333333333332221      2345565555554

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.20  E-value=8.2  Score=40.21  Aligned_cols=245  Identities=16%  Similarity=0.149  Sum_probs=110.6

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHHhhCHHHHH--HhhhhhHHHhc---cCCcHHHHHHHHHHHHhcCcc----cChhHHH
Q 015150          111 VRLLRDNEAEVRIAAAGKVTKICRILNPELAI--QHILPCVKELS---SDSSQHVRSALATVIMGMAPI----LGKDATI  181 (412)
Q Consensus       111 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~~~---~d~~~~vr~~~~~~l~~l~~~----~~~~~~~  181 (412)
                      ......+..+||....+++..+.+..|+....  ..++..+....   ......+-+.+..++.-+...    ++.+++ 
T Consensus       848 v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci-  926 (1610)
T KOG1848|consen  848 VSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI-  926 (1610)
T ss_pred             HHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH-
Confidence            34556778899999999999998887765321  22333333222   222344444455555444332    222222 


Q ss_pred             HhhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhH--HHhhhChhhH
Q 015150          182 EQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL--LASQLGVGFF  258 (412)
Q Consensus       182 ~~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~--l~~~~~~~~~  258 (412)
                      ..++..+....+ ..+-.+-..|+..+..+...+.....         ...+|.+   .+..++-+..  =.+..-++.+
T Consensus       927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~---------S~sed~~---~~~~~e~~~ss~~~~~~l~e~l  994 (1610)
T KOG1848|consen  927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMF---------STSEDSC---AYNSVEDLYSSMKSKEILPEVL  994 (1610)
T ss_pred             HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhh---------ccchhhh---hhcchhhhcccccchhhhhhHH
Confidence            234444444432 23445555555555444433321000         0000000   0000000000  0000111222


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh--------hhhhhHHHHHhhhc--CCc-------hHHHHHHH
Q 015150          259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--------AMQHIVPQVLEMIN--NPH-------YLYRMTIL  321 (412)
Q Consensus       259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~~l~~l~~~~~--~~~-------~~~r~~~~  321 (412)
                      .-.+...+.++..|+-.+||..|++++-++....|...        +-..++|.+-..-.  -.+       .+.-++.+
T Consensus       995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen  995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred             HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence            22244444555555555555555555555554443211        11122222220000  000       11224555


Q ss_pred             HHHHHhccccchh-----------HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150          322 QAISLLAPVMGSE-----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       322 ~~l~~l~~~~~~~-----------~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  368 (412)
                      ..++.+++.++..           ..++.++.++.....|.++++..++++++..+..
T Consensus      1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred             hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence            6666665544432           2366677777777778888888888888776643

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=94.17  E-value=3.8  Score=36.26  Aligned_cols=243  Identities=16%  Similarity=0.221  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc--------
Q 015150            5 RRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ--------   76 (412)
Q Consensus         5 R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~--------   76 (412)
                      ++-+++.|+.+-+.++.  ....-+..-..++.|++-.+|..|++.|..++..    +..+.+.+.+.++++        
T Consensus        41 k~lasq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~Lf  114 (460)
T KOG2213|consen   41 KRLASQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGLF  114 (460)
T ss_pred             HHHHHHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHHH
Confidence            45566677777666652  2333444455568899999999999999988876    233333333333332        


Q ss_pred             ----CCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh--CHHHHHHhhh
Q 015150           77 ----DKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NPELAIQHIL  146 (412)
Q Consensus        77 ----d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~  146 (412)
                          -.+..+|..+...|..=.-.++.+.    ....++..+...+.|-..+-=...+..|+.+-...  .++.-...+.
T Consensus       115 ~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa  194 (460)
T KOG2213|consen  115 GQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELA  194 (460)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHH
Confidence                1356677777666544332222222    22345666666666655543344444444432221  1111222233


Q ss_pred             hhHHHh-----ccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh----ccc-ChHHHHHHHHHHHHHHHhhch
Q 015150          147 PCVKEL-----SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL----KDE-FPDVRLNIISKLDQVNQVIGI  216 (412)
Q Consensus       147 ~~l~~~-----~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~-~~~vr~~~~~~l~~i~~~~~~  216 (412)
                      .....+     +.-+++.+-....+|+..-++.+....-....+.++.+-+    -|. ..+.+...+++|..+..+...
T Consensus       195 ~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~tta  274 (460)
T KOG2213|consen  195 EEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTA  274 (460)
T ss_pred             HHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchH
Confidence            332221     2234555555566666555555433222222333332211    121 256667788888888777643


Q ss_pred             hhHHhhHHHHHHHHhcC------CCchHHHHHHHHhhHHHhhhC
Q 015150          217 DLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQLG  254 (412)
Q Consensus       217 ~~~~~~~~~~l~~~~~d------~~~~vr~~~~~~l~~l~~~~~  254 (412)
                      +.. ...+|.+.+++..      ..+.....-++++-.+...+|
T Consensus       275 q~a-~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg  317 (460)
T KOG2213|consen  275 QAA-RQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG  317 (460)
T ss_pred             HHH-HHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence            332 3445555554332      233444444555554444444

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=94.17  E-value=1.8  Score=32.61  Aligned_cols=97  Identities=9%  Similarity=0.098  Sum_probs=65.9

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  306 (412)
                      +.+++|..-..++..+..  ...|+    ...+..+.+.++++++.+...|+..|..++++.|..+.    ...++..+.
T Consensus        14 l~~~dw~~ileicD~In~--~~~~~----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~   87 (139)
T cd03567          14 NREEDWEAIQAFCEQINK--EPEGP----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI   87 (139)
T ss_pred             CCCCCHHHHHHHHHHHHc--CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence            446677766666666532  11122    23555667778899999999999999999999987653    345666677


Q ss_pred             hhhcC------CchHHHHHHHHHHHHhccccch
Q 015150          307 EMINN------PHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       307 ~~~~~------~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      +++..      .+..||...+..+......++.
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (139)
T cd03567          88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH  120 (139)
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            66642      4567888888888777765543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.15  E-value=0.4  Score=34.68  Aligned_cols=68  Identities=13%  Similarity=0.074  Sum_probs=37.8

Q ss_pred             HHHHHHHHh-cCCCchHHHHHHHHhhHHHhhhCh--hhH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150          223 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV--GFF-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  290 (412)
Q Consensus       223 ~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  290 (412)
                      ++..+.+++ ++.++.+-..++.=++.+++..+.  ... .-.....++.++.+++++||..|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            344444444 223444444455555555555422  111 11245667888888899999999888887764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=94.09  E-value=0.18  Score=34.92  Aligned_cols=70  Identities=16%  Similarity=0.176  Sum_probs=52.4

Q ss_pred             CCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCC--chHHHHHHHHHHHHhhhhchHHHHhhHHHHHH
Q 015150          311 NPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLV  384 (412)
Q Consensus       311 ~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~  384 (412)
                      +++|.+|..+...++.++..++..  .....+...+.+.+.|+.  ...+..|+..|..+    |++.....++|.+.
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~   90 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK   90 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence            467999999999999999888864  367788889999988764  44566666666655    55555566666553

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=94.05  E-value=4  Score=36.02  Aligned_cols=136  Identities=10%  Similarity=0.105  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHHHHHHHhhh-hhhHHHHHHHH-HHhc---cCCchHHHH-HHHHhHHHHhhccCch------hhhhhhHHH
Q 015150            3 MVRRSAATNLGKFAATVEA-AHLKSEIMSIF-EELT---QDDQDSVRL-LAVEGCGALGKLLEPQ------DCVAHILPV   70 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~l-~~l~---~~~~~~~r~-~a~~~l~~i~~~~~~~------~~~~~l~~~   70 (412)
                      .+|+...+.+..+....+. +.+.+.++|-+ ...+   ++..|..|. ..+.++..+...++..      .....++..
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~  121 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC  121 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3567777777777776542 23333333332 2233   223344444 2344444555444331      122223333


Q ss_pred             HHhhcc-C--CChHHHHHHHHHHHHHHHHhCCC------CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH
Q 015150           71 IVNFSQ-D--KSWRVRYMVANQLYELCEAVGPE------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP  138 (412)
Q Consensus        71 l~~l~~-d--~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  138 (412)
                      .....+ |  .-|..|....+.|..+...+...      .....++..+...+++++.+|-..++.++..+.+.+..
T Consensus       122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            333433 2  34899999999999988865321      12245777788888999999999999999988877655

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=94.02  E-value=2.7  Score=33.99  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             HhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          338 SQLLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                      +.+-..+.+.+.|. +.+|..++++|..+
T Consensus       170 ~~~a~~L~~~L~~~-~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  170 PSFAKLLGNALYDQ-PDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence            55666667777664 68888888887654

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.99  E-value=1.8  Score=32.92  Aligned_cols=97  Identities=13%  Similarity=0.107  Sum_probs=61.5

Q ss_pred             cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150          232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE  307 (412)
Q Consensus       232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~  307 (412)
                      .+++|..-..++..+..  ...|    ....+..+.+.++++++.+...|+..|..++++.|..+.    ...++..+..
T Consensus        18 ~~~dw~~ileicD~In~--~~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~   91 (142)
T cd03569          18 GEPDLASILEICDMIRS--KDVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD   91 (142)
T ss_pred             CccCHHHHHHHHHHHhC--CCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence            45667665555555432  1112    223555667777888888888888888888888877543    3456666666


Q ss_pred             hhc-CCchHHHHHHHHHHHHhccccchh
Q 015150          308 MIN-NPHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       308 ~~~-~~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      ++. ..+..||..++..+...+..++.+
T Consensus        92 l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          92 LIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            655 345677777777777776655543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=93.99  E-value=5.5  Score=37.45  Aligned_cols=145  Identities=10%  Similarity=-0.020  Sum_probs=96.1

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh----HHH
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----ITC  337 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~  337 (412)
                      ....+.....|-++.+|..+...++..+..++.-++.-..+...--.+.|.+..+|......+..++...+..    .+.
T Consensus       276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~  355 (740)
T COG5537         276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV  355 (740)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            4445666778888999999999999888766432222223333344567888899999999998887665543    345


Q ss_pred             HhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150          338 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       338 ~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      +.+...++..+.-...-||..+++++..+... |  .....-+-.+..++-|-.++-|....+++..+++..
T Consensus       356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr~l-g--~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~  424 (740)
T COG5537         356 ERFKDRILEFLRTDSDCVRICSIKSLCYLRIL-G--VLSSSEILIVSSCMLDIIPDSRENIVESVESICKID  424 (740)
T ss_pred             HHHHHHHHHHHhhccchhhHHHHHHHHHHHHh-c--ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence            55555566655433334999999998877532 1  112233445555677888887777888888887754

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=93.98  E-value=3  Score=34.30  Aligned_cols=130  Identities=14%  Similarity=0.174  Sum_probs=67.6

Q ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcC-CCchHHHHHHH-HhhHHHhhhChhhHHHHHH
Q 015150          186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIE-YIPLLASQLGVGFFDDKLG  263 (412)
Q Consensus       186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~-~l~~l~~~~~~~~~~~~l~  263 (412)
                      .....+..+...+.|..++..+.......+     ...++.+...+.+ .+|.+.-.++. .++.+....      +...
T Consensus        54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~~  122 (213)
T PF08713_consen   54 ELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEAL  122 (213)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHHH
Confidence            444455555556666555554444332211     1234444444443 45555444422 222222111      3356


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccc
Q 015150          264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  330 (412)
Q Consensus       264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~  330 (412)
                      +.+.+.+++++..+|..++..+......    ...+.++..+...+.|+++.+|.+...+|..++..
T Consensus       123 ~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  123 ELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            6667777777777777776665444332    12345556666666777777777777777776644

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.83  E-value=2.4  Score=34.05  Aligned_cols=72  Identities=25%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG  293 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  293 (412)
                      .+..++.+.+++.+++..+|..+++.+..+.+.- - .-..+.+|.++.+..|+++.+|..|...+..+.+..+
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-L-vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~   77 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQG-L-VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE   77 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-C-CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence            3567788888888889999999988888777642 1 1124478888888999999999999888888877653

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=93.79  E-value=0.13  Score=29.23  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=20.5

Q ss_pred             hhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          339 QLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      ..+|.|.++++++++.++..++++|++++
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            46677777777777777777777777664

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=93.78  E-value=0.15  Score=28.98  Aligned_cols=32  Identities=38%  Similarity=0.333  Sum_probs=28.7

Q ss_pred             HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          375 VEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       375 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      .....+|.|..++++++.+|+..|..+++.++
T Consensus         9 ~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    9 VEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            34578999999999999999999999999886

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=93.67  E-value=3.7  Score=38.08  Aligned_cols=56  Identities=18%  Similarity=0.135  Sum_probs=28.6

Q ss_pred             HHHHhhHHHHHhhc----------CCCCchHHHHHHHHHHHHhhhhchHH--HHhhHHHHHHhhcCCC
Q 015150          335 ITCSQLLPVVINAS----------KDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDP  390 (412)
Q Consensus       335 ~~~~~il~~l~~~l----------~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~  390 (412)
                      .|...++|.++.++          .|..+.+|..+++.+..++..+++.+  ....+...+.+.+.|+
T Consensus       284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~  351 (576)
T KOG2549|consen  284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN  351 (576)
T ss_pred             hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence            44555555555442          24455566666666666665555532  2334445555544443

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.62  E-value=2.6  Score=37.48  Aligned_cols=112  Identities=19%  Similarity=0.246  Sum_probs=79.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH--HHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH---HH
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TI  181 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~  181 (412)
                      +.-+...++..+..||+.|...+..+.+..+...  ....+++.+..++.|.+..||......+..+....+++.   ..
T Consensus        60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~  139 (393)
T KOG2149|consen   60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV  139 (393)
T ss_pred             HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence            4445555678888999999988888777633331  233466667777888899999988888877665554443   22


Q ss_pred             HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh
Q 015150          182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  218 (412)
Q Consensus       182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~  218 (412)
                      ..++|++...+....+++|..+++.+..++..+++..
T Consensus       140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~  176 (393)
T KOG2149|consen  140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF  176 (393)
T ss_pred             HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence            4556666677777788999999988888888776543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.59  E-value=4.9  Score=35.56  Aligned_cols=186  Identities=9%  Similarity=0.029  Sum_probs=104.0

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-Chhh--H------H-HHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 015150          221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGF--F------D-DKLGALCMQWLKDKVYSIRDAAANNVKRLAE  290 (412)
Q Consensus       221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~--~------~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  290 (412)
                      ..+++.+...+..-++..|..+...+..+...- |...  .      . +.++..++..-++++.  --.+-.-+.++++
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di--al~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI--ALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT--HHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc--cchHHHHHHHHHh
Confidence            455566666666666666666666666655442 1110  0      1 2344444444443322  1111112222221


Q ss_pred             Hh--ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc---hhH---HHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150          291 EF--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEI---TCSQLLPVVINASKDRVPNIKFNVAKV  362 (412)
Q Consensus       291 ~~--~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~  362 (412)
                      .-  ..-.+.+..+..+.+....++..+-..+...+..+.....   .++   -.+.+...+.+++.+++.-+|..+++.
T Consensus       153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL  232 (335)
T PF08569_consen  153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL  232 (335)
T ss_dssp             SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred             hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence            10  0001123345556677778888887777777777643322   222   244667788888999999999999999


Q ss_pred             HHHHhhhhchHH------HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          363 LQSLIPIVDQSV------VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       363 l~~l~~~~~~~~------~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      |+.+...-....      -...-+..+..+++|+.+.+|..|-+.+..++..
T Consensus       233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            999964322211      1245677788889999999999999998887653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=93.49  E-value=7.3  Score=37.20  Aligned_cols=249  Identities=10%  Similarity=0.045  Sum_probs=125.6

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCc--HHHHHHHHHHHHhcCc-ccChhHH
Q 015150          104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS--QHVRSALATVIMGMAP-ILGKDAT  180 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~--~~vr~~~~~~l~~l~~-~~~~~~~  180 (412)
                      +-.+-.+...+.+++..+|..++-.|+..-.....+....    .+...+.|.+  .+|...+.-+++.+.- ..+.+ .
T Consensus       451 dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~d-v  525 (878)
T KOG2005|consen  451 DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNED-V  525 (878)
T ss_pred             CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH----HHhHHhcCCCCchhHHHHHHhhcceeEEecCChH-H
Confidence            3466777888888999999999988876544444444433    3334444433  3465555556665432 12222 2


Q ss_pred             HHhhHHHHHHhhc--ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhH
Q 015150          181 IEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  258 (412)
Q Consensus       181 ~~~l~~~l~~~l~--d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~  258 (412)
                      ...++..+.+--+  -+++..|.-++   +--.-++|.....+.+...+..+    ...+|..+ ..+...+...|....
T Consensus       526 ts~ilqtlmekse~El~d~~~RFL~L---GL~llflgkqe~~d~~~e~~~~i----~~~~~~~~-~~lv~~caYaGTGnv  597 (878)
T KOG2005|consen  526 TSSILQTLMEKSETELEDQWFRFLAL---GLALLFLGKQESVDAVVETIKAI----EGPIRKHE-SILVKSCAYAGTGNV  597 (878)
T ss_pred             HHHHHHHHHHhhhhhhhchHHHHHHH---HHHHHHhcccchHHHHHHHHHHh----hhHHHHHH-HHHHHHhhccccCce
Confidence            2333333332211  12344554332   22222334332222333332221    12233322 222222222222111


Q ss_pred             --HHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH
Q 015150          259 --DDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI  335 (412)
Q Consensus       259 --~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~  335 (412)
                        .+.  ..+.....+.... -.++-...|+--.-.+|.+.-.+..+-.+-..+.-.++.+|.+.=-+++-++...+.  
T Consensus       598 l~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq--  673 (878)
T KOG2005|consen  598 LKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ--  673 (878)
T ss_pred             EEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc--
Confidence              111  1111222221111 000002223322333555554556666667777777888999998898888754432  


Q ss_pred             HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150          336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  371 (412)
Q Consensus       336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  371 (412)
                        -.++..+.++..|...+|-..++-++|-+.....
T Consensus       674 --~~vlDtLsk~shd~D~eva~naIfamGLiGAGTn  707 (878)
T KOG2005|consen  674 --VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTN  707 (878)
T ss_pred             --chHHHHHHHhccCcchHHHHHHHHHhccccCCcc
Confidence              3678888999999999999999999987765433

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=93.45  E-value=0.15  Score=29.19  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=16.9

Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHH
Q 015150           64 VAHILPVIVNFSQDKSWRVRYMVANQ   89 (412)
Q Consensus        64 ~~~l~~~l~~l~~d~~~~vR~~~~~~   89 (412)
                      .+.+...+...+.|+++.||.++++.
T Consensus        16 ~~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   16 SSDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            34566666666777777777776654

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=93.43  E-value=16  Score=41.10  Aligned_cols=253  Identities=15%  Similarity=0.172  Sum_probs=139.6

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHhhCH--------HHHHHhhhhhHHHh-ccCCcHHHHHHHHHHHHhcCcccChhHH
Q 015150          110 YVRLLRDNEAEVRIAAAGKVTKICRILNP--------ELAIQHILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDAT  180 (412)
Q Consensus       110 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~  180 (412)
                      +...+...++++|..+...+..+......        -...+.++..+..+ +.|.++.+|......+.   ..+.....
T Consensus       486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~la  562 (2341)
T KOG0891|consen  486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLA  562 (2341)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhc
Confidence            34456667789999997777666554322        11123333333333 46788888877766655   22211111


Q ss_pred             HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhH----HHHHHHHhcCCCchHHHHHHHHhhHHHhhh--C
Q 015150          181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL----LPAIVELAEDRHWRVRLAIIEYIPLLASQL--G  254 (412)
Q Consensus       181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~----~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~  254 (412)
                      ....+-.....+.|..-.++..+...++.++..-. ....+.+    +....++--+...++.......+..+....  .
T Consensus       563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence            22334444555667667777777777776554321 1111122    122222222233344444444443333221  1


Q ss_pred             hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC--hhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhcccc
Q 015150          255 VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG--PDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVM  331 (412)
Q Consensus       255 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~  331 (412)
                      ...+...++-.+...+.|....+-.++..+++.++...|  .....+..++.+.+.+.+.+ ...|.++..+++.+...-
T Consensus       642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~  721 (2341)
T KOG0891|consen  642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESST  721 (2341)
T ss_pred             HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence            111222233445555778888899999999999998877  33334567777777776644 667889999999887544


Q ss_pred             ch----hHHHHhhHHHHHhhcCC-CCchHHHHHHHHHHHH
Q 015150          332 GS----EITCSQLLPVVINASKD-RVPNIKFNVAKVLQSL  366 (412)
Q Consensus       332 ~~----~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l  366 (412)
                      |-    ..-.+.++..+...++. -...+|..+.+.++..
T Consensus       722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~  761 (2341)
T KOG0891|consen  722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL  761 (2341)
T ss_pred             ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence            32    11244455555554443 3566788888887744

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=93.42  E-value=1.5  Score=32.91  Aligned_cols=96  Identities=16%  Similarity=0.160  Sum_probs=62.0

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  306 (412)
                      ..+++|..-..++..+..=      ..-....+..+.+-++++++.+...|+..+..++++.|..+.    ...++..+.
T Consensus        13 l~~~dw~~~l~icD~i~~~------~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~   86 (133)
T smart00288       13 LLEEDWELILEICDLINST------PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV   86 (133)
T ss_pred             CCCcCHHHHHHHHHHHhCC------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence            3456676555555444211      111233556677778889999999999999999998887653    345666666


Q ss_pred             hhhcCCc--hHHHHHHHHHHHHhccccc
Q 015150          307 EMINNPH--YLYRMTILQAISLLAPVMG  332 (412)
Q Consensus       307 ~~~~~~~--~~~r~~~~~~l~~l~~~~~  332 (412)
                      .++.++.  ..+|..++..+......+.
T Consensus        87 ~l~~~~~~~~~Vk~kil~li~~W~~~f~  114 (133)
T smart00288       87 KLIKPKYPLPLVKKRILELIQEWADAFK  114 (133)
T ss_pred             HHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            6666543  2377777777777766554

Unpublished observations. Domain of unknown function.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.36  E-value=2.7  Score=31.95  Aligned_cols=74  Identities=18%  Similarity=0.153  Sum_probs=39.9

Q ss_pred             hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC----CCCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH
Q 015150           65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG----PEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP  138 (412)
Q Consensus        65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~  138 (412)
                      ...+..+.+-++++++.+...++..|..++..+|    .+....+++..+..++++ .+..||..+...+..++..+..
T Consensus        36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            3444445555555555665556665555555544    233334455555555555 5556666666666666555543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=93.34  E-value=2  Score=32.23  Aligned_cols=96  Identities=16%  Similarity=0.206  Sum_probs=57.4

Q ss_pred             cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150          232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE  307 (412)
Q Consensus       232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~  307 (412)
                      .+++|..-..++..+..-  ..|    ....+..+.+.++.+++.++..|+..+..++++.|..+.    ...++..+..
T Consensus        14 ~~~D~~~il~icd~I~~~--~~~----~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~   87 (133)
T cd03561          14 EEPDWALNLELCDLINLK--PNG----PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK   87 (133)
T ss_pred             CCccHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence            446666555555544322  112    223555666777778888888888888888888776543    2244455555


Q ss_pred             hhcC---CchHHHHHHHHHHHHhccccch
Q 015150          308 MINN---PHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       308 ~~~~---~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      ++..   .+..+|..+++.+......++.
T Consensus        88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          88 IAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            5544   3456777777777666655543

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=93.19  E-value=0.52  Score=36.68  Aligned_cols=57  Identities=16%  Similarity=0.230  Sum_probs=33.0

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 015150           78 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI  135 (412)
Q Consensus        78 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  135 (412)
                      ..-.+|++|.+++..+.+.+........+++.+...+.| +..||..+...+.+++..
T Consensus        39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~   95 (169)
T PF08623_consen   39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQL   95 (169)
T ss_dssp             GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHh
Confidence            345566666666666666555555555556666666666 566666666666666443

; PDB: 4A0C_A 1U6G_C.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=93.10  E-value=2.9  Score=31.54  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=58.7

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~  368 (412)
                      ...+-.+.+.++++++.+..-++..+..+.+.+|..+    ....++..+.+++.+      ..+.||..++..+..+..
T Consensus        37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4466677788889999999999999999999888763    345677777777753      568899999999999988


Q ss_pred             hhch
Q 015150          369 IVDQ  372 (412)
Q Consensus       369 ~~~~  372 (412)
                      .+..
T Consensus       117 ~f~~  120 (139)
T cd03567         117 ELPH  120 (139)
T ss_pred             Hhcc
Confidence            7764

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=93.09  E-value=6.6  Score=35.58  Aligned_cols=231  Identities=10%  Similarity=0.059  Sum_probs=104.0

Q ss_pred             ChHHHHHHHHHHHHHHHH------hCCCCcccchHHHHHHhcCCCh--HHHHHHHHHHHHHHHHhhCHH----HHHHhhh
Q 015150           79 SWRVRYMVANQLYELCEA------VGPEPTRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPE----LAIQHIL  146 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~------~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~----~~~~~~~  146 (412)
                      +.++-..++++++.+...      ++.+. ...++......+.+++  ..+-...+.++..  ..+++.    .....++
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~-~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~  135 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDF-ASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL  135 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH
Confidence            567777788888776532      22222 2234555555554433  2333333333321  112222    1222233


Q ss_pred             hhHHHhcc-CCcHHHHHHHHHHHHhcCcccChhHHH--HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhH
Q 015150          147 PCVKELSS-DSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  223 (412)
Q Consensus       147 ~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~  223 (412)
                      ..+...-+ =++..+-.....++..+....+.....  ..=+|.+...+-+....+|..+...+..+...++++......
T Consensus       136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            33332221 233333333444444444332221111  112233433344556778888777777776666654332222


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHH
Q 015150          224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP  303 (412)
Q Consensus       224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~  303 (412)
                      +....+....+. +.-....+.+..+...-+......+++..+..+|+++.                 +..-.+.+..+.
T Consensus       216 ~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~  277 (372)
T PF12231_consen  216 VLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLK  277 (372)
T ss_pred             HHHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHH
Confidence            222211111122 44444445555554443333344455555555554431                 000111234445


Q ss_pred             HHHhhhcCCchHHHHHHHHHHHHhccc
Q 015150          304 QVLEMINNPHYLYRMTILQAISLLAPV  330 (412)
Q Consensus       304 ~l~~~~~~~~~~~r~~~~~~l~~l~~~  330 (412)
                      .....+++++..+|..|..+-..+...
T Consensus       278 v~e~cFn~~d~~~k~~A~~aW~~liy~  304 (372)
T PF12231_consen  278 VPEKCFNSSDPQVKIQAFKAWRRLIYA  304 (372)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            555566777777777777777666543

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.07  E-value=14  Score=39.12  Aligned_cols=198  Identities=18%  Similarity=0.125  Sum_probs=119.0

Q ss_pred             ccChHHHHHHHHHHHHHHHhhchhhHH---hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHH
Q 015150          194 DEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ  268 (412)
Q Consensus       194 d~~~~vr~~~~~~l~~i~~~~~~~~~~---~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~  268 (412)
                      -.|+..+..|+..+..+......+...   +...-.+.++..|.+.+||...-..+..+...+++.  .+...++|...-
T Consensus        52 KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~  131 (1312)
T KOG0803|consen   52 KRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLG  131 (1312)
T ss_pred             ccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhh
Confidence            346788888888888887665544332   223334556778888899998888888887776553  233446666666


Q ss_pred             HhcCchhHHHHHHHHHHHHHHHHhChh----hhhhhhHHHHHhhhc-------------------CCchHHHHHHHHHHH
Q 015150          269 WLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMIN-------------------NPHYLYRMTILQAIS  325 (412)
Q Consensus       269 ~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~-------------------~~~~~~r~~~~~~l~  325 (412)
                      .-.|....|-.+|...+......-...    .+...+.+.+.+.+.                   .+..++-..++.++.
T Consensus       132 ~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~  211 (1312)
T KOG0803|consen  132 GQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLL  211 (1312)
T ss_pred             eecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHH
Confidence            666777777777766665443311000    012233333333211                   122455556666666


Q ss_pred             HhccccchhH-HH---H-----hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCC
Q 015150          326 LLAPVMGSEI-TC---S-----QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPD  391 (412)
Q Consensus       326 ~l~~~~~~~~-~~---~-----~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~  391 (412)
                      .+....|.+. ..   +     .-...+.++++++.|.+|.+....+..+.+.+..-   .....+.|.+.....+.+
T Consensus       212 ~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d  289 (1312)
T KOG0803|consen  212 KLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD  289 (1312)
T ss_pred             HHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc
Confidence            6654444321 11   1     12335678899999999999999998887665443   233566777777666665

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=93.02  E-value=9.4  Score=37.14  Aligned_cols=97  Identities=13%  Similarity=0.049  Sum_probs=66.0

Q ss_pred             cCCchHHHHHHHHHHHHhccccchh-------H-HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH-HHHhhHH
Q 015150          310 NNPHYLYRMTILQAISLLAPVMGSE-------I-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIR  380 (412)
Q Consensus       310 ~~~~~~~r~~~~~~l~~l~~~~~~~-------~-~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~  380 (412)
                      ...+..+-++++.+|..+.-..+..       . -.+..+|.+..++...+..|..+++.+|.+++...... ....+.+
T Consensus       529 ~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~  608 (717)
T KOG1048|consen  529 LSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAI  608 (717)
T ss_pred             HhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchH
Confidence            3445667788888888876433321       1 35678899999999999999999999999998765543 3445677


Q ss_pred             HHHHhhcCCCC------ccHHHHHHHHHHHhH
Q 015150          381 PCLVELSEDPD------VDVRFFATQALQSKD  406 (412)
Q Consensus       381 ~~l~~l~~d~~------~~vr~~a~~al~~~~  406 (412)
                      |.|...+-+..      .+.-..++..+-.+.
T Consensus       609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv  640 (717)
T KOG1048|consen  609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV  640 (717)
T ss_pred             HHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence            77777654443      355555555555554

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=92.95  E-value=7.1  Score=36.79  Aligned_cols=129  Identities=16%  Similarity=0.090  Sum_probs=83.3

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH----HHHhh
Q 015150          109 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA----TIEQL  184 (412)
Q Consensus       109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l  184 (412)
                      .+.....|-++.+|..++..++.....++.-.+.-..+...--+++|.+..||..+...+..+....+...    +.+.+
T Consensus       279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRF  358 (740)
T COG5537         279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERF  358 (740)
T ss_pred             HHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            34556788899999999999998888776655544455666667899999999999999988876654332    22334


Q ss_pred             HHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHH
Q 015150          185 LPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA  241 (412)
Q Consensus       185 ~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~  241 (412)
                      ...+.+++. |.+- ||..+++.+..+....-   +...-+-.+..++-|..|+-|..
T Consensus       359 k~rILE~~r~D~d~-VRi~sik~l~~lr~lg~---L~~SeIlIvsscmlDi~pd~r~~  412 (740)
T COG5537         359 KDRILEFLRTDSDC-VRICSIKSLCYLRILGV---LSSSEILIVSSCMLDIIPDSREN  412 (740)
T ss_pred             HHHHHHHHhhccch-hhHHHHHHHHHHHHhcc---cchhHHHHHHHHHhcCCCcchHH
Confidence            444444443 5445 99999988887754311   11122333444455555553333

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.94  E-value=10  Score=37.47  Aligned_cols=362  Identities=10%  Similarity=0.064  Sum_probs=182.3

Q ss_pred             HHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCC-----hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc---
Q 015150           43 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL---  114 (412)
Q Consensus        43 ~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~-----~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---  114 (412)
                      .|+..-..+.....-++ +.....+...+-+...|.+     |..-.+++-.+..+++.++...  ...+|.+++.+   
T Consensus       440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asi  516 (982)
T KOG2022|consen  440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASI  516 (982)
T ss_pred             HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhcccc
Confidence            34444444444444443 2234445555555655554     7788888889999999887655  23466666654   


Q ss_pred             --CCChHHHHHHHHHHHHHHHHhhCHHHH-HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHH
Q 015150          115 --RDNEAEVRIAAAGKVTKICRILNPELA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFL  189 (412)
Q Consensus       115 --~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~  189 (412)
                        +-.++..-..+...++..+..+++.+. .+..+|.+.+.+..+...  ..+...+..++.....+  .+.+.++....
T Consensus       517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~~  594 (982)
T KOG2022|consen  517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVCY  594 (982)
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence              334778888999999999888876633 344567777666433322  23333455555433221  11223333333


Q ss_pred             Hhhcc--cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH-------hc--CCCchHHHHHHH---HhhHHHhhh-C
Q 015150          190 SLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-------AE--DRHWRVRLAIIE---YIPLLASQL-G  254 (412)
Q Consensus       190 ~~l~d--~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~-------~~--d~~~~vr~~~~~---~l~~l~~~~-~  254 (412)
                      ..+..  -.+..|....+++|.+.+...++.+.++++..+..+       +.  -+++.-+...+-   ++..+...+ +
T Consensus       595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~  674 (982)
T KOG2022|consen  595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLIN  674 (982)
T ss_pred             HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence            33332  246788899999999998888776645444333222       11  123333333333   333333322 1


Q ss_pred             h---------------------hhHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHH----HHh
Q 015150          255 V---------------------GFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ----VLE  307 (412)
Q Consensus       255 ~---------------------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~----l~~  307 (412)
                      +                     -.+...++|.+.+.++  -.+..|-++++.....-+...+.. +....+|.    +..
T Consensus       675 ~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r  753 (982)
T KOG2022|consen  675 KKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVR  753 (982)
T ss_pred             CCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHH
Confidence            0                     1123455666655443  234556666666555444444444 33333444    333


Q ss_pred             hhcCCchHHHHHHHHHHHHhc--cccchh--HHHHhhHHHHHhhcC----CCCchHHHHHHHHHHHHhhhhc----h--H
Q 015150          308 MINNPHYLYRMTILQAISLLA--PVMGSE--ITCSQLLPVVINASK----DRVPNIKFNVAKVLQSLIPIVD----Q--S  373 (412)
Q Consensus       308 ~~~~~~~~~r~~~~~~l~~l~--~~~~~~--~~~~~il~~l~~~l~----d~~~~vR~~~~~~l~~l~~~~~----~--~  373 (412)
                      +...+-...-.-...++-...  +.+++.  .-+...+...+..+.    .+++..-......+..+.+...    +  .
T Consensus       754 ~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~  833 (982)
T KOG2022|consen  754 FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSML  833 (982)
T ss_pred             hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchH
Confidence            333222111110001111111  111110  011122222222222    2234555555555555544332    1  2


Q ss_pred             HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          374 VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       374 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      .++..+++.-..+++-|.+-.-.++.+.+..+....+
T Consensus       834 ~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~  870 (982)
T KOG2022|consen  834 AFTSLILICAFILLNSPEPTTIRAASQFLTALATYAT  870 (982)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcc
Confidence            4667788777788888888766677777766655443

>PF05536 Neurochondrin: Neurochondrin

Probab=92.75  E-value=9.5  Score=36.50  Aligned_cols=223  Identities=12%  Similarity=0.119  Sum_probs=126.4

Q ss_pred             HHHhccCCchHHHHHHHHhHHHHhhccCchh-hhhh-----hHHHHHhhccC-------CChHHHHHHHHHHHHHHHHhC
Q 015150           32 FEELTQDDQDSVRLLAVEGCGALGKLLEPQD-CVAH-----ILPVIVNFSQD-------KSWRVRYMVANQLYELCEAVG   98 (412)
Q Consensus        32 l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-~~~~-----l~~~l~~l~~d-------~~~~vR~~~~~~l~~l~~~~~   98 (412)
                      ...+++..+++-|-.++-.+.++.+.-+... ....     =.+++..++..       +....+.-++..|+.++..-.
T Consensus        10 c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~   89 (543)
T PF05536_consen   10 CLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPE   89 (543)
T ss_pred             HHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChh
Confidence            3444555555666666666666665422110 0101     11223333332       234456666666666665111


Q ss_pred             --CCCcccchHHHHHHhcCCChH-HHHHHHHHHHHHHHHhh-CHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150           99 --PEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRIL-NPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP  173 (412)
Q Consensus        99 --~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~-~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  173 (412)
                        .+...-.-+|.+.+.+...+. .+-.-|.++|..++.+- |.+ ......++.+.+.+.+ .+.....+...+..+..
T Consensus        90 ~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls  168 (543)
T PF05536_consen   90 LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLS  168 (543)
T ss_pred             hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHH
Confidence              111123468888888877666 88899999998887432 222 2233466666666655 55566777777766655


Q ss_pred             ccChhHH------HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--------hhhHHhhHHHHHHHHhcCC-CchH
Q 015150          174 ILGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------IDLLSQSLLPAIVELAEDR-HWRV  238 (412)
Q Consensus       174 ~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--------~~~~~~~~~~~l~~~~~d~-~~~v  238 (412)
                      ..+.+..      ...+++.+.+.........+...+..|+.+....+        ...+...+...+..++.+. .+.-
T Consensus       169 ~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~  248 (543)
T PF05536_consen  169 RLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQ  248 (543)
T ss_pred             hcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHH
Confidence            5543221      23455666665555556666667777777765542        1223456666666666654 4667


Q ss_pred             HHHHHHHhhHHHhhhCh
Q 015150          239 RLAIIEYIPLLASQLGV  255 (412)
Q Consensus       239 r~~~~~~l~~l~~~~~~  255 (412)
                      |..+......+.+..|.
T Consensus       249 R~~al~Laa~Ll~~~G~  265 (543)
T PF05536_consen  249 RDPALNLAASLLDLLGP  265 (543)
T ss_pred             HHHHHHHHHHHHHHhCh
Confidence            77787777777777764

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=92.62  E-value=3.1  Score=31.56  Aligned_cols=75  Identities=11%  Similarity=0.159  Sum_probs=56.2

Q ss_pred             hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHH----HHhhHHHHHhhcCCCC-ch---HHHHHHHHHHHHhhh
Q 015150          298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKDRV-PN---IKFNVAKVLQSLIPI  369 (412)
Q Consensus       298 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~-~~---vR~~~~~~l~~l~~~  369 (412)
                      ....+..+.+.++++++.+...++..+..+...+|..+.    ...++..+.+++.++. ..   ||..++..+..+...
T Consensus        40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~  119 (140)
T PF00790_consen   40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA  119 (140)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence            356777788888888899999999999999888876532    3346777777665432 22   899999999999888


Q ss_pred             hch
Q 015150          370 VDQ  372 (412)
Q Consensus       370 ~~~  372 (412)
                      +..
T Consensus       120 f~~  122 (140)
T PF00790_consen  120 FKS  122 (140)
T ss_dssp             TTT
T ss_pred             HCC
Confidence            754

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.53  E-value=4.7  Score=38.39  Aligned_cols=73  Identities=23%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             ccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          330 VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       330 ~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      .+|.+.-.+-.+..+-+.+.=.++.+|+++--+++-++.. .|   .-.++..|.+.+.|.|.+|..+++-++|-+.
T Consensus       631 AMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvS-NP---q~~vlDtLsk~shd~D~eva~naIfamGLiG  703 (878)
T KOG2005|consen  631 AMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVS-NP---QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIG  703 (878)
T ss_pred             hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccC-CC---cchHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence            3555533444556666677777889999988888877642 22   1358899999999999999999999998764

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=92.47  E-value=7.8  Score=34.80  Aligned_cols=69  Identities=22%  Similarity=0.236  Sum_probs=50.7

Q ss_pred             hhHHHHHhhcCCCC-chHHHHHHHHHHHHhhhhchH--HHH-hhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          339 QLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS--VVE-KSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       339 ~il~~l~~~l~d~~-~~vR~~~~~~l~~l~~~~~~~--~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +++..|.++|+.++ |.+-..|+.=+++....+...  ... -.--..+..+++.+|++||.+|..|+..+..
T Consensus       366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            57777788877655 667777778888887765442  111 2355677888999999999999999988754

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.44  E-value=9.3  Score=35.66  Aligned_cols=294  Identities=12%  Similarity=0.116  Sum_probs=154.4

Q ss_pred             chHHHHHHhcCCCh---HHHHHHHHHHHHHHHH--hhCHHHHHHh--hhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh
Q 015150          105 DVVPAYVRLLRDNE---AEVRIAAAGKVTKICR--ILNPELAIQH--ILPCVKELSSDSSQHVRSALATVIMGMAPILGK  177 (412)
Q Consensus       105 ~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~--~~~~~~~~~~--~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  177 (412)
                      .++..+..++++++   ..+-..++++++....  .++++.+.+.  ++..+...+++.  ..-..+.+++..+......
T Consensus       153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~~  230 (559)
T KOG2081|consen  153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDD--ELHEEATECICALLYCSLD  230 (559)
T ss_pred             HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhhh
Confidence            45556666665432   5566777888877766  4555544332  445555555532  3334444444433222100


Q ss_pred             --h--HHH------HhhHHHHHHh-hcccChHHHHHHHHHHHHHHHhhc------hhhHHhhHHHHHHHHhcCCCchHHH
Q 015150          178 --D--ATI------EQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRL  240 (412)
Q Consensus       178 --~--~~~------~~l~~~l~~~-l~d~~~~vr~~~~~~l~~i~~~~~------~~~~~~~~~~~l~~~~~d~~~~vr~  240 (412)
                        +  ...      ..++|...++ ...++.+-+.+..+-+..+++...      ++.+ -.++..+.-....+++++-.
T Consensus       231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie  309 (559)
T KOG2081|consen  231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIE  309 (559)
T ss_pred             hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhh
Confidence              0  011      1222222222 223345544444444444433321      1111 12334445555667776666


Q ss_pred             HHHHHhhHHHhhhCh---hhHHHHHHHHHHHHh-------------------cCchhHHHHHHHHHHHHHHHHhChhhhh
Q 015150          241 AIIEYIPLLASQLGV---GFFDDKLGALCMQWL-------------------KDKVYSIRDAAANNVKRLAEEFGPDWAM  298 (412)
Q Consensus       241 ~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~  298 (412)
                      ........+.+....   ......+.|.+.+++                   .++-.+-|..+...+..+.-.+|.+.-.
T Consensus       310 ~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~l  389 (559)
T KOG2081|consen  310 ASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECL  389 (559)
T ss_pred             hhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            555555555544321   111111223333222                   1223457777888888888877765433


Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC--CCchHHHHHHHHHHHHhhhhchH-HH
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS-VV  375 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~-~~  375 (412)
                      +...-.+.+  +.++|..-++++..+..++...+.+  .+.++|.+++.+..  .-..+|.+++-.+|.+...+... ..
T Consensus       390 k~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~  465 (559)
T KOG2081|consen  390 KQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPEL  465 (559)
T ss_pred             HHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHH
Confidence            333222222  4567999999999999999887765  45667766665432  22349999999999998877653 23


Q ss_pred             HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          376 EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       376 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ..-++..+.+...+..  ....++.++..++.
T Consensus       466 le~v~~~~~~~~~~~~--~as~~a~~~~~i~~  495 (559)
T KOG2081|consen  466 LEPVLRYIRQGLQLKR--LASAAALAFHRICS  495 (559)
T ss_pred             HHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence            3344444444443333  55666666665554

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.40  E-value=2.6  Score=31.64  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             cCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH----HhhHHHHHHh
Q 015150          310 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVE  385 (412)
Q Consensus       310 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~----~~~i~~~l~~  385 (412)
                      .+++|..-...+..+..-  .-+    -...+..+.+.++++++++...++..+..+.+.-|....    ...++..+.+
T Consensus        14 ~~~D~~~il~icd~I~~~--~~~----~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~   87 (133)
T cd03561          14 EEPDWALNLELCDLINLK--PNG----PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK   87 (133)
T ss_pred             CCccHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence            446666555555554432  111    234556666667777778888888777777776665321    2233334555


Q ss_pred             hcCC---CCccHHHHHHHHHHHhHHhhh
Q 015150          386 LSED---PDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       386 l~~d---~~~~vr~~a~~al~~~~~~~~  410 (412)
                      +...   .+..||..+.+.+..+...++
T Consensus        88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          88 IAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            5443   466788888888877777664

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.30  E-value=3.7  Score=31.20  Aligned_cols=75  Identities=5%  Similarity=0.088  Sum_probs=59.5

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhchH
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS  373 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~  373 (412)
                      ...+-.+.+.+++++..+...++..+..+.+.+|..+    ....++..+.+.+. ...+.||..++..+..++..+..+
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            4566777888888889899999999999998888753    34467777777765 467889999999999999887654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.07  E-value=8  Score=34.07  Aligned_cols=61  Identities=11%  Similarity=0.171  Sum_probs=26.0

Q ss_pred             hhccCCChHHHHHHHHHHHHHHHHhCCCCcc--cchHHHHHHhcC----CChHHHHHHHHHHHHHHH
Q 015150           73 NFSQDKSWRVRYMVANQLYELCEAVGPEPTR--SDVVPAYVRLLR----DNEAEVRIAAAGKVTKIC  133 (412)
Q Consensus        73 ~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~  133 (412)
                      ++++.+|+.++..++..++.+....+.....  .+.++.+.+++.    .++.++...|+.++..+.
T Consensus       112 ~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL  178 (312)
T PF03224_consen  112 KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL  178 (312)
T ss_dssp             HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence            3555556666666666666665543332221  133344433332    233444555555555554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=91.93  E-value=9.3  Score=34.53  Aligned_cols=366  Identities=10%  Similarity=0.054  Sum_probs=176.1

Q ss_pred             chhHHHHHHHHHHHHHHh-hhh-----hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh-------hhhhhH
Q 015150            2 PMVRRSAATNLGKFAATV-EAA-----HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-------CVAHIL   68 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~-~~~-----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-------~~~~l~   68 (412)
                      ..||.-..+|+.+..+.- ..+     .+...++..+.+..++++..+-...++++++++-.....-       ....++
T Consensus        56 ~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi  135 (604)
T KOG4500|consen   56 DTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI  135 (604)
T ss_pred             chhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence            356777778888777532 112     2335566777777788877888889999999986543210       112356


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHHHhC-CCCc-----ccchHHHHHHhc--CCChHHHHHHHHHHHHHHHHhhCH--
Q 015150           69 PVIVNFSQDKSWRVRYMVANQLYELCEAVG-PEPT-----RSDVVPAYVRLL--RDNEAEVRIAAAGKVTKICRILNP--  138 (412)
Q Consensus        69 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~-~~~~-----~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~--  138 (412)
                      ..+..++...++.--+...-..|-+..... .+..     ...+++.+...+  .=.+...-.-....+..+.+...+  
T Consensus       136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~  215 (604)
T KOG4500|consen  136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEML  215 (604)
T ss_pred             hhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhh
Confidence            677777665554333333333444433322 1111     123445444332  222233333333333333332222  


Q ss_pred             --HHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCccc------ChhHHHHhhHHHHHHhhcccCh-HHHHHHHHHHH
Q 015150          139 --ELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPIL------GKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLD  208 (412)
Q Consensus       139 --~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~------~~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~  208 (412)
                        .-+...+.-.+.+++ +..++..+.++.+.+...++.-      .++...+.++..+.++=.+.+. +.+ +..+..+
T Consensus       216 ~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~-~l~k~~~  294 (604)
T KOG4500|consen  216 YPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDML-NLFKRIA  294 (604)
T ss_pred             hhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHH-HHHHhhh
Confidence              111112222233333 3345566777777776655421      1111222333333332112211 111 1111111


Q ss_pred             HHH--HhhchhhH-----HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh--hhHHHHHHHHHHHHh-----cCch
Q 015150          209 QVN--QVIGIDLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWL-----KDKV  274 (412)
Q Consensus       209 ~i~--~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l-----~d~~  274 (412)
                      .+.  -..|.+..     -+.++..+...+.+.+........-+++.+++.=..  ......++..++.++     .|.+
T Consensus       295 el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgn  374 (604)
T KOG4500|consen  295 ELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGN  374 (604)
T ss_pred             hHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            111  11233332     123566667777777878877777888888764322  222333444444443     4677


Q ss_pred             hHHHHHHHHHHHHHHHHhChhh--hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---h-HHHHhhHHHHHhhc
Q 015150          275 YSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---E-ITCSQLLPVVINAS  348 (412)
Q Consensus       275 ~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~-~~~~~il~~l~~~l  348 (412)
                      ..++.+++.++..+.-...++.  ....+...++..++-..+.+....+..+..+......   + --..+++..+..+.
T Consensus       375 V~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Ws  454 (604)
T KOG4500|consen  375 VERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWS  454 (604)
T ss_pred             chhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhh
Confidence            7788888999888775443321  1122333444444444444444333333333221110   0 01345677778887


Q ss_pred             CCCCch-HHHHHHHHHHHHhh
Q 015150          349 KDRVPN-IKFNVAKVLQSLIP  368 (412)
Q Consensus       349 ~d~~~~-vR~~~~~~l~~l~~  368 (412)
                      +.++.. |--..-+.+..+.+
T Consensus       455 ks~D~aGv~gESnRll~~lIk  475 (604)
T KOG4500|consen  455 KSPDFAGVAGESNRLLLGLIK  475 (604)
T ss_pred             hCCccchhhhhhhHHHHHHHH
Confidence            777655 55555555555543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=91.19  E-value=10  Score=33.60  Aligned_cols=208  Identities=11%  Similarity=0.133  Sum_probs=123.0

Q ss_pred             HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh-h------H--H-hhHHHHHHHHhcCCCchHHHHHHHHhhHHH
Q 015150          181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-L------L--S-QSLLPAIVELAEDRHWRVRLAIIEYIPLLA  250 (412)
Q Consensus       181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~-~------~--~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~  250 (412)
                      ...+++.+...+..-+.+.|+.+...+..+.+.-..+ .      +  . +.++..+....++++-..-.+  ..+-..+
T Consensus        74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g--~mlRec~  151 (335)
T PF08569_consen   74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCG--DMLRECI  151 (335)
T ss_dssp             HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHH--HHHHHHT
T ss_pred             HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHH--HHHHHHH
Confidence            4567777777777777888888887777776542111 1      1  1 345555666556554322221  1111111


Q ss_pred             hhh--ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhh---hhhhHHHHHhhhcCCchHHHHHHHH
Q 015150          251 SQL--GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMTILQ  322 (412)
Q Consensus       251 ~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~  322 (412)
                      +.-  ....+.+...--+.+....++-+|-..|+.++..+.....   .+++   .+.++.....++.++++-+|..++.
T Consensus       152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk  231 (335)
T PF08569_consen  152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK  231 (335)
T ss_dssp             TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred             hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence            100  0000011112225677888999999999999998775421   2222   2456677788899999999999999


Q ss_pred             HHHHhccccchhH------HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc--hHH------HHhhHHHHHHhhcC
Q 015150          323 AISLLAPVMGSEI------TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSV------VEKSIRPCLVELSE  388 (412)
Q Consensus       323 ~l~~l~~~~~~~~------~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~--~~~------~~~~i~~~l~~l~~  388 (412)
                      .|+.+..--....      -.+.-+..+..+++|++.++|..|..++..+...=.  ++.      -.+.++..+.....
T Consensus       232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~  311 (335)
T PF08569_consen  232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHT  311 (335)
T ss_dssp             HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTT
T ss_pred             HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999863222211      134567788889999999999999999887764311  111      13567788888777


Q ss_pred             CC
Q 015150          389 DP  390 (412)
Q Consensus       389 d~  390 (412)
                      |+
T Consensus       312 ~~  313 (335)
T PF08569_consen  312 DR  313 (335)
T ss_dssp             T-
T ss_pred             CC
Confidence            77

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=91.14  E-value=5.4  Score=30.26  Aligned_cols=98  Identities=13%  Similarity=0.214  Sum_probs=62.8

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHH-
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ-  304 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~-  304 (412)
                      +.+++|..-..++..+..  ...|+    ...+-.+.+-+. ..++.|...|+..+..++++.|..+.    ...++.. 
T Consensus        14 l~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~   87 (141)
T cd03565          14 LQSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV   87 (141)
T ss_pred             CCCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence            345677766666666542  22232    234445566565 46788888889999999999987654    2456665 


Q ss_pred             HHhhhcC---CchHHHHHHHHHHHHhccccchh
Q 015150          305 VLEMINN---PHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       305 l~~~~~~---~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      +.+.+.+   .+..|+...+..+...+..++.+
T Consensus        88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (141)
T cd03565          88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRGS  120 (141)
T ss_pred             HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            6666653   23567888888887777666543

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=91.13  E-value=0.95  Score=35.27  Aligned_cols=58  Identities=17%  Similarity=0.076  Sum_probs=46.0

Q ss_pred             CCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150           38 DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA   96 (412)
Q Consensus        38 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~   96 (412)
                      |+--++|++|.+++..+............++..+...+.| +..+|.-+...+.+++..
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~   95 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQL   95 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHh
Confidence            4445789999999999998877666667778888888888 889999999999888764

; PDB: 4A0C_A 1U6G_C.

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=91.04  E-value=7.6  Score=31.80  Aligned_cols=133  Identities=16%  Similarity=0.154  Sum_probs=73.7

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-CChHHHHHHHH-HHHHHHHHhCCCCccc
Q 015150           27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVAN-QLYELCEAVGPEPTRS  104 (412)
Q Consensus        27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~~~~-~l~~l~~~~~~~~~~~  104 (412)
                      .+..++..+.+++.-+.|..|+..+........++.     ++.+..++.+ .+|.+=-..+. .++.+...      .+
T Consensus        46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~  114 (208)
T cd07064          46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD------YP  114 (208)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Ch
Confidence            344555556677766677777776666544443331     3333333333 34544333222 22332211      22


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  174 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  174 (412)
                      ...+.+.+...|++.-+|.+|+.+...+.+....    ..+...+..++.|++..|+.++...|-+++..
T Consensus       115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~  180 (208)
T cd07064         115 EFEPVMDEWSTDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSKT  180 (208)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence            3356677777777777777777665554443222    23445566667777778888877777777654

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=91.01  E-value=4.1  Score=29.87  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=47.7

Q ss_pred             HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH-----HhhHHHHHHhhc--------CCCCccHHHHHHHHHH
Q 015150          337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRPCLVELS--------EDPDVDVRFFATQALQ  403 (412)
Q Consensus       337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~i~~~l~~l~--------~d~~~~vr~~a~~al~  403 (412)
                      ...++..|.+-|+++.+.|+..+++.|..++..-.++..     ...++..+....        .++...||..|.+++.
T Consensus        36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~  115 (122)
T cd03572          36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK  115 (122)
T ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence            557888888899999999999999999888765443311     122333333322        3455579999999887


Q ss_pred             HhH
Q 015150          404 SKD  406 (412)
Q Consensus       404 ~~~  406 (412)
                      .+.
T Consensus       116 ~if  118 (122)
T cd03572         116 AIF  118 (122)
T ss_pred             HHh
Confidence            764

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.00  E-value=24  Score=37.56  Aligned_cols=76  Identities=9%  Similarity=0.023  Sum_probs=43.4

Q ss_pred             hhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150           19 VEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA   96 (412)
Q Consensus        19 ~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~   96 (412)
                      +..++++..+...+.....|....-+ .-++++..+.+..++-. .+.+-+.+..++.++.-..+..+++.+..+...
T Consensus      1192 F~~skf~~~l~~~~sie~~D~~~Pa~-~F~rifK~l~r~ygd~~-~~~l~s~Le~l~~sk~~~~Q~laAEilaG~i~g 1267 (1710)
T KOG1851|consen 1192 FSDSKFLSRLINFLSIEKEDIFNPAD-TFCRIFKGLFRNYGDVK-LPALKSHLELLMASKKENEQLLAAEILAGLIHG 1267 (1710)
T ss_pred             hhhhHHHHHHHHHHHhccccccChHH-HHHHHHHHHHHhCCchh-hhhhhHHHHHHHhcccchHHHHHHHHHHHHHhh
Confidence            34455555555554433344432222 44678888888876653 233444455566666666777778877766643

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=90.99  E-value=6.3  Score=33.61  Aligned_cols=130  Identities=16%  Similarity=0.220  Sum_probs=67.6

Q ss_pred             hcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCch---HHHHHHHHhhHHHhhhCh-----hhHHHHHH
Q 015150          192 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGV-----GFFDDKLG  263 (412)
Q Consensus       192 l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~---vr~~~~~~l~~l~~~~~~-----~~~~~~l~  263 (412)
                      ++..+.+.|.+|+.+|..   ..|    .+.++|.+..++.+.-.+   -.......+......+..     +.+..+++
T Consensus       207 ~dEs~~~~r~aAl~sLr~---dsG----lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm  279 (450)
T COG5095         207 LDESDEQTRDAALESLRN---DSG----LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM  279 (450)
T ss_pred             HHHHHHHHHHHHHHHhcc---Ccc----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence            344456777776655532   112    245666666655542111   111111112222222221     23456677


Q ss_pred             HHHHHHh-----c-C----chhHHHHHHHHHHHHHHHHhChhh--hhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhc
Q 015150          264 ALCMQWL-----K-D----KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTILQAISLLA  328 (412)
Q Consensus       264 ~~l~~~l-----~-d----~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~  328 (412)
                      |-++.++     . +    +...+|.-|+..++.+++.++..+  +...+...+++.+-|.+  +...-.++..++.+.
T Consensus       280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~  358 (450)
T COG5095         280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS  358 (450)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence            8777664     1 2    233599999999999999887643  23344445555444433  445566777666654

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=90.84  E-value=15  Score=35.00  Aligned_cols=83  Identities=18%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             HHHHHhhchhhHHhhHHHHHHHHh-cCCCchHHHHHHHHhhHHHhhhChhh----HHHHHHHHHHHHhcCchhHHHHHHH
Q 015150          208 DQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAA  282 (412)
Q Consensus       208 ~~i~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~  282 (412)
                      +.+.+.+.++.+ ..++-.+..++ .++.-.+|-+++..++.+++...++.    ..+.+..++-.+|.|++|.+++.|+
T Consensus       466 ~~~~~~l~~~~i-~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~AL  544 (559)
T PF14868_consen  466 SFFIQLLDPQLI-EQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHAL  544 (559)
T ss_pred             HHHHHhcChHHH-HHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHH
Confidence            333344444444 33444444444 33334477777777777776654332    2344555666677888888888888


Q ss_pred             HHHHHHHHH
Q 015150          283 NNVKRLAEE  291 (412)
Q Consensus       283 ~~l~~l~~~  291 (412)
                      .+++.+++.
T Consensus       545 eAF~~FAe~  553 (559)
T PF14868_consen  545 EAFGQFAER  553 (559)
T ss_pred             HHHHHHhcc
Confidence            888877764

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=90.83  E-value=9.4  Score=32.51  Aligned_cols=139  Identities=16%  Similarity=0.137  Sum_probs=72.4

Q ss_pred             HHHHHHHHhcCch-----hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHH-HHHHHHhccccchhH
Q 015150          262 LGALCMQWLKDKV-----YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTI-LQAISLLAPVMGSEI  335 (412)
Q Consensus       262 l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~-~~~l~~l~~~~~~~~  335 (412)
                      .+|.++..+.+++     ..++ .++..++.+++..+...+..     ++..+....++-+... -+.+..+.+.+.++ 
T Consensus       112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La~-----il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-  184 (262)
T PF14225_consen  112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLAR-----ILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-  184 (262)
T ss_pred             HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-
Confidence            4455555555554     3344 45567777776554433222     2222222222222222 22233333333322 


Q ss_pred             HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH-HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      +...++-.+..++..+.+.+|..+++.|..+.+..+-. ....+++..+.+++..+   .-..|.+.+..+...-|
T Consensus       185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s~  257 (262)
T PF14225_consen  185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTD---LWMEALEVLDEIVTRSG  257 (262)
T ss_pred             hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhcc
Confidence            34456777888888888889999999998887765432 13344555555655333   33355556655555444

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.73  E-value=2.6  Score=31.64  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=58.9

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCCCC--chHHHHHHHHHHHHhhhhch
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQ  372 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~  372 (412)
                      ...+..+.+.++++++.+...++..+..+...+|..+    ....++..+.+.+.++.  +.||..++..+..++..+..
T Consensus        36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~  115 (133)
T smart00288       36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN  115 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence            4567778888889999999999999999999888763    34457777777777653  33999999999999887754

Unpublished observations. Domain of unknown function.

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=90.66  E-value=11  Score=33.19  Aligned_cols=135  Identities=11%  Similarity=0.152  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhcCcccC-hhHHHHhhHHHHHH-hhcc---cChHHHHH-HHHHHHHHHHhhch------hhHHhhHHHHH
Q 015150          160 VRSALATVIMGMAPILG-KDATIEQLLPIFLS-LLKD---EFPDVRLN-IISKLDQVNQVIGI------DLLSQSLLPAI  227 (412)
Q Consensus       160 vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l~d---~~~~vr~~-~~~~l~~i~~~~~~------~~~~~~~~~~l  227 (412)
                      +|+...+.+........ .+...+.++|.+.+ .+.|   ..|+.|.. +++.+..+...++.      ..+.+.++...
T Consensus        43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T  122 (319)
T PF08767_consen   43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT  122 (319)
T ss_dssp             HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            33444444444433332 22233445554443 3433   33344432 33444445444442      12234444444


Q ss_pred             HHHhcC---CCchHHHHHHHHhhHHHhhhChh------hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 015150          228 VELAED---RHWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP  294 (412)
Q Consensus       228 ~~~~~d---~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  294 (412)
                      ..+.++   ..|..|....+.+..+.+..-..      .....++..+...+++++.+|...++..+..+++.+..
T Consensus       123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            555544   45889999888888887764321      12234667777889999999999999999999987754

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=90.63  E-value=7.9  Score=31.29  Aligned_cols=64  Identities=16%  Similarity=0.139  Sum_probs=48.4

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150          108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  174 (412)
Q Consensus       108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  174 (412)
                      +.+.....+++.-+|..++..+......   +.....++..+..+..|++..|+.++.+++..++..
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            7788888888888888888888765554   223345677777778888888888888888887754

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=90.62  E-value=5.3  Score=29.32  Aligned_cols=71  Identities=14%  Similarity=0.079  Sum_probs=40.3

Q ss_pred             HhhHHHHHHHHhc-CCCchHHHHHHHHhhHHHhhhChh-hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150          220 SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  292 (412)
Q Consensus       220 ~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  292 (412)
                      ...++|.+.+.++ ...++.|.++...++.++....-. .....++..+.+.......  ...++.++..+.+..
T Consensus         4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence            3567788877777 667788888877777777655321 1122222222222222222  356777777777654

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=90.26  E-value=17  Score=34.66  Aligned_cols=152  Identities=12%  Similarity=0.040  Sum_probs=85.5

Q ss_pred             HHhhhhhHHHhccCCcH--HHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh--------cccChHHHHHHHHHHHHHH
Q 015150          142 IQHILPCVKELSSDSSQ--HVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--------KDEFPDVRLNIISKLDQVN  211 (412)
Q Consensus       142 ~~~~~~~l~~~~~d~~~--~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vr~~~~~~l~~i~  211 (412)
                      ...++.-+-..+.+++|  .--...|+++|.+...+....-...++..+.+++        +|+..-|-...+...++--
T Consensus       479 e~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYp  558 (1053)
T COG5101         479 EKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYP  558 (1053)
T ss_pred             HHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccch
Confidence            34455555555666554  5567889999999988876654555555554443        2322222222222222222


Q ss_pred             Hhhch-hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh----------HHHHHHHHHHHHhcCchhHHHHH
Q 015150          212 QVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----------FDDKLGALCMQWLKDKVYSIRDA  280 (412)
Q Consensus       212 ~~~~~-~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----------~~~~l~~~l~~~l~d~~~~vr~~  280 (412)
                      +.+.. -.+.+.++.-+.+++.+....++..++..+-.+++.+...+          +...++.-+-+.-.|-.+.-...
T Consensus       559 RFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~ht  638 (1053)
T COG5101         559 RFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHT  638 (1053)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhH
Confidence            22221 12335556666777888889999999999988887664332          33333333333344555555555


Q ss_pred             HHHHHHHHHHHhC
Q 015150          281 AANNVKRLAEEFG  293 (412)
Q Consensus       281 a~~~l~~l~~~~~  293 (412)
                      ..++++-++....
T Consensus       639 fYeAcg~vIse~p  651 (1053)
T COG5101         639 FYEACGMVISEVP  651 (1053)
T ss_pred             HHHHHhHHHhccc
Confidence            6666666665443

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=90.16  E-value=4.7  Score=28.85  Aligned_cols=62  Identities=15%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             CchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH
Q 015150          312 PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV  375 (412)
Q Consensus       312 ~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~  375 (412)
                      .+...|..++..++.+.+..|..  .+.++++-.+...+..+  ++|..++++...+.+.++++..
T Consensus        27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l   90 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL   90 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence            44667778888888887733332  34555555555555544  7888888888888888777543

; GO: 0004674 protein serine/threonine kinase activity

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=90.07  E-value=19  Score=34.83  Aligned_cols=68  Identities=21%  Similarity=0.150  Sum_probs=50.4

Q ss_pred             hHHHHhhHHHHHhhcCCC----CchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          334 EITCSQLLPVVINASKDR----VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       334 ~~~~~~il~~l~~~l~d~----~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      +.|.++++..+-+++.|.    ...+|..+++.+..+...  +   ....-+.+..+.-|+.+..|..+.+|.+.|.
T Consensus       686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k--D---~~~~~~y~iR~~~dki~~lR~l~yqa~eqI~  757 (993)
T COG5234         686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK--D---SSGKKLYIIRQTFDKIDSLRGLAYQALEQIR  757 (993)
T ss_pred             HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc--c---ccCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence            467888999888887664    466899999999886431  1   1234456777788999999998888877653

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=89.97  E-value=19  Score=34.77  Aligned_cols=68  Identities=10%  Similarity=0.120  Sum_probs=46.0

Q ss_pred             hhhhhhhhHHHHHhhhcCCc----hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          294 PDWAMQHIVPQVLEMINNPH----YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       294 ~~~~~~~~l~~l~~~~~~~~----~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                      .+.+++.++..+.+.+.|..    ..+|.-++..+..+.-.   +  ....-+.+...+-|+.+..|.-+.++...+
T Consensus       685 ie~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k---D--~~~~~~y~iR~~~dki~~lR~l~yqa~eqI  756 (993)
T COG5234         685 IEEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK---D--SSGKKLYIIRQTFDKIDSLRGLAYQALEQI  756 (993)
T ss_pred             HHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc---c--ccCCchhHHHHhhcccHHHHhhhhhhhhhe
Confidence            35567888888888777642    55788888877775311   1  112234566777899999997777777665

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=89.79  E-value=5.7  Score=28.42  Aligned_cols=63  Identities=6%  Similarity=0.045  Sum_probs=34.8

Q ss_pred             cChHHHHHHHHHHHHHHHhhchh--hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH
Q 015150          195 EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  259 (412)
Q Consensus       195 ~~~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  259 (412)
                      .+..-|..++++++.+.+..+..  ...++++-.+...++.+  ..|..+++++..+.+.++.+.+.
T Consensus        27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~   91 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLG   91 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHH
Confidence            34566777777777777733321  11233333333333333  67777777777777777665443

; GO: 0004674 protein serine/threonine kinase activity

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=89.33  E-value=7.9  Score=29.34  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHhhhcCCc--hH--HHHHHHHHHHHhcccc
Q 015150          260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEMINNPH--YL--YRMTILQAISLLAPVM  331 (412)
Q Consensus       260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~~~~~~--~~--~r~~~~~~l~~l~~~~  331 (412)
                      ...+..+.+.+.++++.+...|+..+..++++.|..+.    ...++..+..++.++.  ..  ||..++..+......+
T Consensus        41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            44677788889999999999999999999999987654    3457777777666433  22  8999999999988777


Q ss_pred             chh
Q 015150          332 GSE  334 (412)
Q Consensus       332 ~~~  334 (412)
                      +..
T Consensus       121 ~~~  123 (140)
T PF00790_consen  121 KSD  123 (140)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            543

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=88.94  E-value=6.9  Score=28.39  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=20.5

Q ss_pred             hhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh
Q 015150          300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       300 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      .++..+.+.+.+++|.+...++..+..+.+.+|..
T Consensus        37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~   71 (115)
T cd00197          37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER   71 (115)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence            34555555555566666666666666666555544

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=88.76  E-value=0.55  Score=24.42  Aligned_cols=29  Identities=34%  Similarity=0.374  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC
Q 015150           80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD  116 (412)
Q Consensus        80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  116 (412)
                      |.||..++.+|+.+..        ++.++.+.+.++|
T Consensus         1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d   29 (30)
T smart00567        1 PLVRHEAAFALGQLGD--------EEAVPALIKALED   29 (30)
T ss_pred             CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence            4577888888877642        4456666666665

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=88.09  E-value=14  Score=31.61  Aligned_cols=97  Identities=19%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             hcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCC------chHHHHHHHHHHHHhcccc--chhHHHHhhH
Q 015150          270 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP------HYLYRMTILQAISLLAPVM--GSEITCSQLL  341 (412)
Q Consensus       270 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~------~~~~r~~~~~~l~~l~~~~--~~~~~~~~il  341 (412)
                      +...+...|.+|+.++..       +.-..+++|.+..++++.      +-..-.+.+.....+...-  =.++|...++
T Consensus       207 ~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm  279 (450)
T COG5095         207 LDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM  279 (450)
T ss_pred             HHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence            344455567777666532       222344555555555431      2223334444444443211  1234566677


Q ss_pred             HHHHhhc------CCC----CchHHHHHHHHHHHHhhhhchH
Q 015150          342 PVVINAS------KDR----VPNIKFNVAKVLQSLIPIVDQS  373 (412)
Q Consensus       342 ~~l~~~l------~d~----~~~vR~~~~~~l~~l~~~~~~~  373 (412)
                      |.++.++      +++    ...+|..|+..++..+..++..
T Consensus       280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~  321 (450)
T COG5095         280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS  321 (450)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence            7665553      122    2347878887777777776664

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=87.76  E-value=1.1  Score=23.27  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=16.6

Q ss_pred             hHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCC
Q 015150          354 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED  389 (412)
Q Consensus       354 ~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d  389 (412)
                      .||..++.+|+.+..        +...+.|...++|
T Consensus         2 ~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d   29 (30)
T smart00567        2 LVRHEAAFALGQLGD--------EEAVPALIKALED   29 (30)
T ss_pred             HHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence            467777777776643        3445555555554

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=87.68  E-value=9.7  Score=28.38  Aligned_cols=136  Identities=12%  Similarity=0.042  Sum_probs=82.0

Q ss_pred             cCchhHHHHHHHHHHHHHHHHhCh-hhhh-hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch-hHH-HHhhHHHHHh
Q 015150          271 KDKVYSIRDAAANNVKRLAEEFGP-DWAM-QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EIT-CSQLLPVVIN  346 (412)
Q Consensus       271 ~d~~~~vr~~a~~~l~~l~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~-~~~il~~l~~  346 (412)
                      ...+.+.++....+|+.++-.-.+ ..+. -.++..+...+..++....+-++..+..+|.--.. +++ ...=+|..+.
T Consensus        27 ~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~  106 (173)
T KOG4646|consen   27 TTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIF  106 (173)
T ss_pred             HhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEe
Confidence            345566667777777766521110 1111 24667777778888887777777776666532111 122 2223567778


Q ss_pred             hcCCCCchHHHHHHHHHHHHhhh---hchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          347 ASKDRVPNIKFNVAKVLQSLIPI---VDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       347 ~l~d~~~~vR~~~~~~l~~l~~~---~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      .++|+...+--.++.++..+...   ..++.....++..+.........+.|..+..+++..+
T Consensus       107 ~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~  169 (173)
T KOG4646|consen  107 VLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV  169 (173)
T ss_pred             ecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            88898888888888887777532   1223344556666666555666777888887777654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.56  E-value=18  Score=31.27  Aligned_cols=100  Identities=15%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             HHhhccCCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-HHHHHhhh
Q 015150           71 IVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAIQHIL  146 (412)
Q Consensus        71 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~  146 (412)
                      +..++.+++|.||+.+++.+..+... +...   .....++.+.++++|..+  -.-|+.++.+++....- +...+.++
T Consensus         8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~   84 (353)
T KOG2973|consen    8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL   84 (353)
T ss_pred             HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45566677777777777765544332 1111   113466777777777666  34455556555442211 12222244


Q ss_pred             hhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150          147 PCVKELSSDSSQHVRSALATVIMGMAP  173 (412)
Q Consensus       147 ~~l~~~~~d~~~~vr~~~~~~l~~l~~  173 (412)
                      ..+...+.|+.+..-...|..+.+++.
T Consensus        85 k~l~~~~~~p~~~lad~~cmlL~NLs~  111 (353)
T KOG2973|consen   85 KVLMDMLTDPQSPLADLICMLLSNLSR  111 (353)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence            445555566655555556666666553

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=87.51  E-value=5.8  Score=29.06  Aligned_cols=35  Identities=11%  Similarity=0.332  Sum_probs=22.8

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH
Q 015150          104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP  138 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  138 (412)
                      .++...+.+-+++.++.|+.-++..|..++...++
T Consensus        37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~   71 (122)
T cd03572          37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS   71 (122)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH
Confidence            45666666666777777777777777666665443

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length

Probab=87.26  E-value=7  Score=31.56  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=16.3

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLA  289 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~  289 (412)
                      ++..+++...+.-..||..|..++..+.
T Consensus         8 ~~~~llrqa~EKiDrvR~~A~~~l~~ll   35 (193)
T PF12612_consen    8 IIGGLLRQAAEKIDRVREVAGKCLQRLL   35 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444555666777766666666

There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=87.15  E-value=5.8  Score=35.11  Aligned_cols=99  Identities=10%  Similarity=0.106  Sum_probs=64.9

Q ss_pred             HhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHH
Q 015150          230 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQV  305 (412)
Q Consensus       230 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l  305 (412)
                      ....++|.+-..+|..++.-. ..|     ...+..+++.++..++.|...|+..++.+..++|..+.    +..+...+
T Consensus        20 ~nT~enW~~IlDvCD~v~~~~-~~~-----kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el   93 (462)
T KOG2199|consen   20 KNTSENWSLILDVCDKVGSDP-DGG-----KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL   93 (462)
T ss_pred             ccccccHHHHHHHHHhhcCCC-ccc-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence            344566776665555543322 112     23566678888888888888888888888888886543    34566677


Q ss_pred             HhhhcC-CchHHHHHHHHHHHHhccccchh
Q 015150          306 LEMINN-PHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       306 ~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      ..++.+ ...++++..-..+...++.|..+
T Consensus        94 ~al~~~~~h~kV~~k~~~lv~eWsee~K~D  123 (462)
T KOG2199|consen   94 RALIESKAHPKVCEKMRDLVKEWSEEFKKD  123 (462)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence            777773 44677777777777777655554

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=87.10  E-value=29  Score=33.27  Aligned_cols=156  Identities=13%  Similarity=0.099  Sum_probs=85.1

Q ss_pred             chhhhhhhHHHHHhhccCC--ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc--------CCChHHHHHHHHHHH
Q 015150           60 PQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL--------RDNEAEVRIAAAGKV  129 (412)
Q Consensus        60 ~~~~~~~l~~~l~~l~~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~d~~~~vr~~a~~~l  129 (412)
                      ..+....+...+-..+.++  +|.--...|=++|++.-.++.+..+..++..+..++        +|....|-...+..+
T Consensus       475 v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvv  554 (1053)
T COG5101         475 VDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVV  554 (1053)
T ss_pred             hhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeee
Confidence            3444555555555444443  455556667777877766665543333333333322        354455555445555


Q ss_pred             HHHHHhhCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH----------HHHhhHHHHHHhhcccChH
Q 015150          130 TKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA----------TIEQLLPIFLSLLKDEFPD  198 (412)
Q Consensus       130 ~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~----------~~~~l~~~l~~~l~d~~~~  198 (412)
                      |..-.++... .+...++.-+.+.+....+.|+.+||..+..+++..+.+.          +...++.-+-+.-.|-.|.
T Consensus       555 GQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pq  634 (1053)
T COG5101         555 GQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQ  634 (1053)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChH
Confidence            5443333222 3444455555566667788999999999998876553332          2333333333333444555


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 015150          199 VRLNIISKLDQVNQVIG  215 (412)
Q Consensus       199 vr~~~~~~l~~i~~~~~  215 (412)
                      -....-.+.+-+.+..+
T Consensus       635 Q~htfYeAcg~vIse~p  651 (1053)
T COG5101         635 QKHTFYEACGMVISEVP  651 (1053)
T ss_pred             HHhHHHHHHhHHHhccc
Confidence            55556666666665544

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.04  E-value=36  Score=34.34  Aligned_cols=92  Identities=13%  Similarity=0.175  Sum_probs=68.5

Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh--hhH---HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP  294 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  294 (412)
                      ...++..-..++.+++-++|..++..+..-...+..  ..+   ..+.+|.++..+.++++-+...|++++..+....|.
T Consensus       801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD  880 (1014)
T KOG4524|consen  801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD  880 (1014)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence            345666667789999999999999988776655532  112   355678888889999999999999999998887663


Q ss_pred             ---hhhhhhhHHHHHhhhcC
Q 015150          295 ---DWAMQHIVPQVLEMINN  311 (412)
Q Consensus       295 ---~~~~~~~l~~l~~~~~~  311 (412)
                         .-+.+.++|.+..++.+
T Consensus       881 Fv~sR~l~dvlP~l~~~~~~  900 (1014)
T KOG4524|consen  881 FVASRFLEDVLPWLKHLCQD  900 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence               22346788887776655

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.00  E-value=11  Score=39.96  Aligned_cols=75  Identities=17%  Similarity=0.289  Sum_probs=43.3

Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH
Q 015150           64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP  138 (412)
Q Consensus        64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  138 (412)
                      ++.+...++....+.+.+.|..++..+..+....+...  ..++.+|++.++++|.+.+|...+...+..+-+.+|+
T Consensus      1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence            34444444445555566666666666666666665544  2356666666666666666666666644444333333

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=86.63  E-value=15  Score=33.49  Aligned_cols=146  Identities=14%  Similarity=0.076  Sum_probs=84.6

Q ss_pred             HHHHHHHHhcCchhH--HHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh---H
Q 015150          262 LGALCMQWLKDKVYS--IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE---I  335 (412)
Q Consensus       262 l~~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~---~  335 (412)
                      -+..++.++..++.+  ||..+.+.|.++...-..+.+...-+..++.+.+... .......+..++.+-+.....   -
T Consensus       181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L  260 (832)
T KOG3678|consen  181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL  260 (832)
T ss_pred             hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            455667777766654  6999988888877554444433333444555444333 233334445555544322111   1


Q ss_pred             HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +....+..++-+++-..|.+-..++-+|+++...-+.+    .....+.+-|..+....|.-.|.+|+-|+..++.
T Consensus       261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat  336 (832)
T KOG3678|consen  261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT  336 (832)
T ss_pred             HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence            22233444555566666777778888888887544432    2334455555556666677789999988887764

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.38  E-value=20  Score=30.60  Aligned_cols=166  Identities=13%  Similarity=0.166  Sum_probs=91.2

Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc----------chHHHHHHhcCCCh-----HHHHHHHHHH
Q 015150           64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS----------DVVPAYVRLLRDNE-----AEVRIAAAGK  128 (412)
Q Consensus        64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~----------~l~~~l~~~l~d~~-----~~vr~~a~~~  128 (412)
                      .+.+.+++.+.+..++.  -..+++.|..+.....+.....          -.+|.+...+++++     +.++ .++..
T Consensus        62 f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~-~~A~~  138 (262)
T PF14225_consen   62 FEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI-EIAEA  138 (262)
T ss_pred             chhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH-HHHHH
Confidence            34577888877765432  3445556666655432222111          25777777777766     4444 44477


Q ss_pred             HHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHH
Q 015150          129 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD  208 (412)
Q Consensus       129 l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~  208 (412)
                      +..+++..+......-+-.+...-.++.+..++..+ ..+   .+.+.++. ...++-.+..++.+..+.+|..+++.|.
T Consensus       139 La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~-~~l---~~~f~P~~-~~~~l~~Ll~lL~n~~~w~~~~~L~iL~  213 (262)
T PF14225_consen  139 LAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVV-SYL---REAFFPDH-EFQILTFLLGLLENGPPWLRRKTLQILK  213 (262)
T ss_pred             HHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHH-HHH---HHHhCchh-HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            777775444332222222222223344444444433 222   22222111 2355667788888888889999998888


Q ss_pred             HHHHhhchh-hHHhhHHHHHHHHhcCCCch
Q 015150          209 QVNQVIGID-LLSQSLLPAIVELAEDRHWR  237 (412)
Q Consensus       209 ~i~~~~~~~-~~~~~~~~~l~~~~~d~~~~  237 (412)
                      .+.+..+.. ....+++..+.+++..+.|.
T Consensus       214 ~ll~~~d~~~~~~~dlispllrlL~t~~~~  243 (262)
T PF14225_consen  214 VLLPHVDMRSPHGADLISPLLRLLQTDLWM  243 (262)
T ss_pred             HHhccccCCCCcchHHHHHHHHHhCCccHH
Confidence            888776521 13455666777777776665

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=85.97  E-value=4.7  Score=27.51  Aligned_cols=67  Identities=18%  Similarity=0.216  Sum_probs=38.4

Q ss_pred             hhhhHHHHHhhh-cCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHH
Q 015150          298 MQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQ  364 (412)
Q Consensus       298 ~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~  364 (412)
                      .+.++..+...+ ..++..+|+..++++.++....|..  .-++.++..+.....|.+..+-..|.+++.
T Consensus        15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            344555555543 3345677777777777776655543  235556666666666666666555555543

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=85.95  E-value=27  Score=31.73  Aligned_cols=72  Identities=15%  Similarity=0.162  Sum_probs=49.5

Q ss_pred             HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH------HHHhhHHHHHHhhcCCCCc----cHHHHHHHHHHH
Q 015150          335 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS------VVEKSIRPCLVELSEDPDV----DVRFFATQALQS  404 (412)
Q Consensus       335 ~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~------~~~~~i~~~l~~l~~d~~~----~vr~~a~~al~~  404 (412)
                      .+.+..+.....+++++++.+|..|..+-..+.....++      ...-...|...++-.....    ++|..+...+..
T Consensus       270 ~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~  349 (372)
T PF12231_consen  270 EHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCN  349 (372)
T ss_pred             HhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhc
Confidence            356677777888899999999999999998887655442      1222445665555444444    677777777665


Q ss_pred             hH
Q 015150          405 KD  406 (412)
Q Consensus       405 ~~  406 (412)
                      +.
T Consensus       350 ll  351 (372)
T PF12231_consen  350 LL  351 (372)
T ss_pred             hH
Confidence            43

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal

Probab=85.38  E-value=36  Score=32.74  Aligned_cols=28  Identities=18%  Similarity=0.367  Sum_probs=18.7

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI  135 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  135 (412)
                      ++..+..-++|.  ..|..++.++.++.-.
T Consensus       223 ~i~~~~~klKdk--~~r~~~l~~l~RLlWv  250 (552)
T PF14222_consen  223 LIESLISKLKDK--ETRPVALECLSRLLWV  250 (552)
T ss_pred             HHHHHHhhcCCh--hhhHHHHHHHHHHHHH
Confidence            334444446665  7899999999887643

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=85.29  E-value=1.4  Score=24.67  Aligned_cols=28  Identities=21%  Similarity=0.202  Sum_probs=16.9

Q ss_pred             hHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          340 LLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       340 il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      .+|.+.+++.++++.++..++.+|..++
T Consensus        13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       13 GLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            4555556665556666666666666553

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG2733 Predicted membrane protein [Function unknown]

Probab=84.94  E-value=28  Score=31.11  Aligned_cols=238  Identities=16%  Similarity=0.147  Sum_probs=110.6

Q ss_pred             chhHHHHHHHHHHHHHH--hhhhhhH-----HHHHHHHHHhccCCc--hHHHHHHHHhHHHHhhccCchhhhhhhHHHHH
Q 015150            2 PMVRRSAATNLGKFAAT--VEAAHLK-----SEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLLEPQDCVAHILPVIV   72 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~--~~~~~~~-----~~l~~~l~~l~~~~~--~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~   72 (412)
                      |--+.+..+.++.+...  +.++.+.     ..+-..+-+.+.++.  ..+-+...+.+..+.+.+.++.....+-..+.
T Consensus        77 prNKdri~e~l~~FV~~~fLs~e~i~~Kl~~~~~a~~igewls~~en~~~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~  156 (415)
T COG2733          77 PRNKDRIGENLGQFVQNNFLSPESINEKLRRADIASRIGEWLSQPENAQRVSQETLKLLSQLLELLDDDDIQRVIKRAVI  156 (415)
T ss_pred             cccHHHHHHHHHHHHHHcccChHHHHHHHHhcCHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            34467778888888764  2222222     123334444455442  23344455666666666666655555555555


Q ss_pred             hhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhh-HHH
Q 015150           73 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC-VKE  151 (412)
Q Consensus        73 ~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-l~~  151 (412)
                      ..+....+.-  .+...|..+...-+.+...+.++..+.+.+++  ..+++.+...+....+.-.+-     ..|. ..+
T Consensus       157 ~~i~e~~~~~--~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~--~~v~~~i~~~i~r~~~ee~p~-----f~~~~~~~  227 (415)
T COG2733         157 RAIAEVYLGP--TAGRVLESLTADDRHQALLDKLIDRLIRWLLN--DKVREFIAAVIVRYLEEEHPL-----FAPIIIVS  227 (415)
T ss_pred             HHHhcccccc--hHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhcCcc-----chhhhhHH
Confidence            5555544322  23334444444444444445566666666554  567777777776665532221     1111 112


Q ss_pred             hccCCcHHHHHHHHHHHHhcCcccChhH----HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh----hHHhhH
Q 015150          152 LSSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSL  223 (412)
Q Consensus       152 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~----~~~~~~  223 (412)
                      .+.+.+  ++.+....+..+.. .++..    +...+.....++-.|+...-|...++.  .+...-...    .....+
T Consensus       228 ~v~~~~--I~~a~~~~~D~v~~-~p~h~~rk~~~R~~~~~i~~L~~Dp~~~~r~e~iK~--~~~~~~~i~~~~~~~w~~~  302 (415)
T COG2733         228 LVGKRD--ISDAVNSFLDEVRR-DPDHKMRKDFDRFLFDLIDDLYHDPGMAARAEAIKS--YLKEDEAIATAAGDMWTSL  302 (415)
T ss_pred             HHhhch--HHHHHHHHHHHHHh-CcCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcChHHHHHHHHHHHHH
Confidence            223322  55555555555443 11111    111233333333334333333222221  111100000    111222


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150          224 LPAIVELAEDRHWRVRLAIIEYIPLLASQL  253 (412)
Q Consensus       224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  253 (412)
                      -..+..=.++++..+|.-....+..+.+.+
T Consensus       303 ~~~l~~D~e~~~s~l~~~l~~~~~~~Ge~l  332 (415)
T COG2733         303 SEWLKEDYESEDSMLRKRLARAVQSVGEEL  332 (415)
T ss_pred             HHHHHhcccCchhHHHHHHHHHHHHHHHHH
Confidence            233344456777788887777777766655

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=84.50  E-value=31  Score=31.22  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=32.9

Q ss_pred             HHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhChh--hh-hhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150          262 LGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPD--WA-MQHIVPQVLEMINNPHYLYRMTILQAISLLA  328 (412)
Q Consensus       262 l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~--~~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~  328 (412)
                      ++..+..+|+.++ +.+-.-|+.-++.+++..+..  .+ ....-..++++++++++.||-.|+.++..+.
T Consensus       367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM  437 (442)
T ss_pred             HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            4455555554433 445555555555555544321  11 1122344455556666666666666555543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=84.49  E-value=33  Score=31.51  Aligned_cols=165  Identities=13%  Similarity=0.042  Sum_probs=92.6

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCch--HHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-C
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD--SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-K   78 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~--~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~   78 (412)
                      |.|-+.+++.+.+..+   .+.    -+.++.+++..++-  .+|..|.+.+..+...-..+.....-+..++.+.+. +
T Consensus       162 ~aV~~evAq~LCD~iR---~~~----~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e  234 (832)
T KOG3678|consen  162 AAVGREVAQGLCDAIR---LDG----GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKERE  234 (832)
T ss_pred             hhhhHHHHHhhhhHhh---ccc----hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcC
Confidence            4455555555544333   122    34455556666653  469999999888765433332222223444444432 4


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HHHHhhhhhHHH
Q 015150           79 SWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKE  151 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~  151 (412)
                      .+...+..+-.|+.+..+....   ......++.+.-.+.-.++.+-..|..+|+..+-+-+.+    .+.+.+-.-+..
T Consensus       235 ~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~  314 (832)
T KOG3678|consen  235 PVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFP  314 (832)
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhh
Confidence            4566666677777766543211   112334455555666667888888888888877665443    222333344444


Q ss_pred             hccCCcHHHHHHHHHHHHhcCc
Q 015150          152 LSSDSSQHVRSALATVIMGMAP  173 (412)
Q Consensus       152 ~~~d~~~~vr~~~~~~l~~l~~  173 (412)
                      +....+.-.|.-+|-+...++.
T Consensus       315 LA~skDel~R~~AClAV~vlat  336 (832)
T KOG3678|consen  315 LAFSKDELLRLHACLAVAVLAT  336 (832)
T ss_pred             hhcchHHHHHHHHHHHHhhhhh
Confidence            5555677778878777776653

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=84.40  E-value=5  Score=27.36  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=36.7

Q ss_pred             hhHHHHHhh-ccCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHH
Q 015150           66 HILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKV  129 (412)
Q Consensus        66 ~l~~~l~~l-~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l  129 (412)
                      .++..+... .+.++..+|...++++..+....+...  -|..++..+.....|.+..+-..|.+++
T Consensus        17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~   83 (86)
T PF09324_consen   17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV   83 (86)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            333334333 444566777777777777766544322  2455666666666666666666665554

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=84.03  E-value=4.2  Score=37.69  Aligned_cols=109  Identities=9%  Similarity=0.089  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHH---HhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--
Q 015150          260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAE---EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--  334 (412)
Q Consensus       260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--  334 (412)
                      ..+...+++.|++++..|...+...+..++-   .++..++.+.++..+.+.+..++...|....+.+..+.-.+.++  
T Consensus       430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek  509 (743)
T COG5369         430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK  509 (743)
T ss_pred             cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence            4477888888988776666666655554442   34456667788888888888777778888888888887666554  


Q ss_pred             --HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150          335 --ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       335 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  368 (412)
                        +....=+..++.+.+|+.+.|...+++.+.++..
T Consensus       510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc  545 (743)
T COG5369         510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC  545 (743)
T ss_pred             hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence              2223335567888999999999999999988854

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=83.52  E-value=2.1  Score=23.91  Aligned_cols=30  Identities=33%  Similarity=0.239  Sum_probs=25.7

Q ss_pred             hhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          377 KSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       377 ~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      ...+|.|.+++..++.+++..+..++..+.
T Consensus        11 ~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       11 AGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457888888888889999999999998875

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=82.87  E-value=16  Score=26.53  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=21.9

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh
Q 015150          221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  256 (412)
Q Consensus       221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  256 (412)
                      ..++..+.+.+.+++|++..-++..+..+.+..|..
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~   71 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER   71 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence            345555555566666666666666666666666554

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=82.86  E-value=5.4  Score=37.01  Aligned_cols=106  Identities=7%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHH---hCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEA---VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----  139 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----  139 (412)
                      +...+.+.+.+|+..+..-+.-.+.+.+-.   ++.......++..+..++...+...|......+..+.-.+.++    
T Consensus       432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~  511 (743)
T COG5369         432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK  511 (743)
T ss_pred             hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence            444444444444444433333333322211   1222333444555555555445555555555555444333332    


Q ss_pred             HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC
Q 015150          140 LAIQHILPCVKELSSDSSQHVRSALATVIMGMA  172 (412)
Q Consensus       140 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~  172 (412)
                      .....-+..+..+.+|+.|.|...+.+.+-++.
T Consensus       512 ~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft  544 (743)
T COG5369         512 FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT  544 (743)
T ss_pred             hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence            112223445555556666666666665555543

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=81.79  E-value=20  Score=27.15  Aligned_cols=35  Identities=17%  Similarity=0.126  Sum_probs=15.0

Q ss_pred             hhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchh
Q 015150          300 HIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       300 ~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      ..+-.+.+.+. +++..+..-++..+..+.+.+|..
T Consensus        38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~   73 (141)
T cd03565          38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR   73 (141)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH
Confidence            34444444443 233444444444444444444443

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=81.50  E-value=48  Score=31.26  Aligned_cols=83  Identities=10%  Similarity=0.058  Sum_probs=49.8

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhh
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS  378 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  378 (412)
                      +..+..+.+.+..++...+.+++--++..-.....+....-+.|....  .|..-++...+.-+|+.++....+...+..
T Consensus       449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~s--td~pie~~~~asltLg~vFvGtcngD~ts~  526 (881)
T COG5110         449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPIMFS--TDSPIEVVFFASLTLGSVFVGTCNGDLTSL  526 (881)
T ss_pred             chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcC--CCCcHHHHHHHHHhhhheEeeccCchHHHH
Confidence            456677788888899999999998888765544444444444444432  233335555666677766544444444444


Q ss_pred             HHHHH
Q 015150          379 IRPCL  383 (412)
Q Consensus       379 i~~~l  383 (412)
                      ++..+
T Consensus       527 ilqtf  531 (881)
T COG5110         527 ILQTF  531 (881)
T ss_pred             HHHHH
Confidence            44433

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT

Probab=81.32  E-value=1  Score=22.79  Aligned_cols=14  Identities=14%  Similarity=0.202  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHhh
Q 015150          355 IKFNVAKVLQSLIP  368 (412)
Q Consensus       355 vR~~~~~~l~~l~~  368 (412)
                      ||..++.+|+.+..
T Consensus         1 VR~~Aa~aLg~igd   14 (27)
T PF03130_consen    1 VRRAAARALGQIGD   14 (27)
T ss_dssp             HHHHHHHHHGGG-S
T ss_pred             CHHHHHHHHHHcCC
Confidence            56667777776654

Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.08  E-value=18  Score=33.55  Aligned_cols=98  Identities=14%  Similarity=0.185  Sum_probs=72.6

Q ss_pred             HhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHH
Q 015150          230 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQV  305 (412)
Q Consensus       230 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l  305 (412)
                      .+.++||..-..+|..+..--.  +    ....+-.+.+.+++.++.|..-|+..|..+++++|..+.    .+.+++..
T Consensus        13 ~l~~pDWa~NleIcD~IN~~~~--~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em   86 (470)
T KOG1087|consen   13 SLAEPDWALNLEICDLINSTEG--G----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM   86 (470)
T ss_pred             cccCccHHHHHHHHHHHhcCcc--C----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4567888877776665532111  1    124666778889988899999999999999999998654    35677777


Q ss_pred             HhhhcCC--chHHHHHHHHHHHHhccccch
Q 015150          306 LEMINNP--HYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       306 ~~~~~~~--~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      +...+..  ...||..++..|....+.++.
T Consensus        87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~~  116 (470)
T KOG1087|consen   87 VKRPKNKPRDLKVREKILELIDTWQQAFCG  116 (470)
T ss_pred             HhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence            7766654  578999999999888777765

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=80.70  E-value=20  Score=26.28  Aligned_cols=72  Identities=14%  Similarity=0.108  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChh-hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhcccc
Q 015150          258 FDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM  331 (412)
Q Consensus       258 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~  331 (412)
                      +...++|.+...+. ...++.|.++...++.+.....-. ...+.++..+.........  ...++.++..+.+.-
T Consensus         3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence            44668999999998 778899999999999988765421 1222233333332222222  244555666665443

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	412
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		1e-132
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		5e-06
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		1e-132
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		7e-06
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-132
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		7e-06
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		1e-132
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		6e-06
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		1e-132
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		6e-06
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		1e-132
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		5e-06
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		1e-126
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		4e-06
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		8e-64
2qna_A	762	Crystal Structure Of Human Importin-Beta (127-876)		3e-04
2p8q_A	876	Crystal Structure Of Human Importin Beta Bound To T		3e-04
1qgk_A	876	Structure Of Importin Beta Bound To The Ibb Domain		3e-04
1ibr_D	462	Complex Of Ran With Importin Beta Length = 462		3e-04
1m5n_S	485	Crystal Structure Of Heat Repeats (1-11) Of Importi		4e-04
1ukl_A	876	Crystal Structure Of Importin-Beta And Srebp-2 Comp		6e-04

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 8/233 (3%)
Query: 171 MAPILGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 228
           MA   G D+    L PI   +  L++E   +RLN I KL  +   +G++     LLP + 
Sbjct: 1   MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 229 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 288
           +   D    V LA+ E +    + +G   +   L          +   +RD A  +++ +
Sbjct: 57  DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 289 AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 348
           + E  P     H VP V  +     +  R +     S+  P + S +  ++L     N  
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 349 KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
            D  P ++   A  L     +++   V+  I P    L+ D    VR  A +A
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 227

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 170 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 229
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 230 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 289
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 290 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 349
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 350 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 409
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 410 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 469
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 470 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 529
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 530 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 574

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 4   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 62
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 63  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 122
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 123 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 181
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 182 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 218

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 172 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 232 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 291
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 292 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 351
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 352 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 411
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 412 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 471
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 472 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 531
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 532 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 6   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 65  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 183
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 184 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 220

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 418 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 477
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 537
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 538 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 226

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  468 bits (1203), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 418 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 477
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 537
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 538 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 226

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  468 bits (1203), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/405 (56%), Positives = 309/405 (76%), Gaps = 4/405 (0%)
Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 299 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 358
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 359 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 418
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 419 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 478
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 479 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 538
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 539 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 8/233 (3%)
Query: 171 MAPILGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 228
           MA   G D+    L PI   +  L++E   +RLN I KL  +   +G++     LLP + 
Sbjct: 1   MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 229 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 288
           +   D    V LA+ E +    + +G   +   L          +   +RD A  +++ +
Sbjct: 57  DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 289 AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 348
           + E  P     H VP V  +     +  R +     S+  P + S +  ++L     N  
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 349 KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
            D  P ++   A  L     +++   V+  I P    L+ D    VR  A +A
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 227

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  447 bits (1151), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/405 (55%), Positives = 297/405 (73%), Gaps = 4/405 (0%)
Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           P VRR+AA+ LG+FA  +E  ++KSEI+  F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 172 PXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A + P +   ++DKSWRVRY VA++  EL +AVGPE T++D+VPA+  L +D EAEV
Sbjct: 232 DLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEV 291
Query: 122 RIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +    +    ILPC+KEL SD++QHV+SALA+VI G++PILGK
Sbjct: 292 RAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGK 351
Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 352 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 411
Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY PLLA QLGV FFD+KL +LC  WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 412 VRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWA 471
Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL    +P+YL+R T L  I++L+ V G +IT    LP V+  + D V N++F
Sbjct: 472 HATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRF 531
Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 532 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 6   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 65  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPXVRRAAASKLG 183
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 184 EFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEA 220

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score =  241 bits (614), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 160/218 (73%)
Query: 185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
           + + +  L++E   +RLN I KL  +   +G++ LSQSLLPAIVELAED  WRVRLAIIE
Sbjct: 9   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
           Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+
Sbjct: 69  YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 364
           VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 365 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
            + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226

>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
           D V H+LP I    ++  W  RY  A  +   C   GPEP++        +P  + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
               VR  AA  V +IC +L PE AI  +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322

>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
           D V H+LP I    ++  W  RY  A  +   C   GPEP++        +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
               VR  AA  V +IC +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
           D V H+LP I    ++  W  RY  A  +   C   GPEP++        +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
               VR  AA  V +IC +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
           D V H+LP I    ++  W  RY  A  +   C   GPEP++        +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
               VR  AA  V +IC +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
           D V H+LP I    ++  W  RY  A  +   C   GPEP++        +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
               VR  AA  V +IC +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 116
           D V H+LP I    ++  WR R         + E  GPEP +        +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILE--GPEPNQLKPLVIQAMPTLIELMKD 419
Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHI 145
               VR   A  V +IC +L PE AI  +
Sbjct: 420 PSVVVRDTTAWTVGRICELL-PEAAINDV 447

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-134
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-65
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-63
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-53
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-45
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	9e-39
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-36
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-27
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-25
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-07
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	3e-19
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	2e-13
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	2e-07
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	1e-18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	7e-18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-10
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-09
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-12
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	5e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	8e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	5e-11
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	5e-08
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	8e-08
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	5e-06
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	8e-05
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	7e-04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-05
1qgr_A	876	Protein (importin beta subunit); transport recepto	3e-06
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	1e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-05
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	4e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	5e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	9e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-04
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	3e-04
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	9e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  395 bits (1016), Expect = e-134
 Identities = 230/407 (56%), Positives = 308/407 (75%), Gaps = 4/407 (0%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297

Query: 122 RIAAAGKVTKICRILNPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +      +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357

Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417

Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 418 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 477

Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 537

Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL  
Sbjct: 538 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  219 bits (558), Expect = 1e-65
 Identities = 92/405 (22%), Positives = 172/405 (42%), Gaps = 6/405 (1%)

Query: 4   VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
           +R ++   L   A  +     +SE++    +    D+D V L   E  G    L+   + 
Sbjct: 26  LRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEY 84

Query: 64  VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
           V  +LP + + +  +   VR      L  +     P    +  VP   RL   +    R 
Sbjct: 85  VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 144

Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
           +A G  +     ++  +    +    + L SD +  VR A A+ +   A +L  D    +
Sbjct: 145 SACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
           ++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + 
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQ 299
           +    L   +G       L       +KD    +R AA++ VK   E    D      M 
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 359
            I+P + E++++ +   +  +   I  L+P++G + T   LLP+ +   KD  P ++ N+
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 360 AKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404
              L  +  ++    + +S+ P +VEL+ED    VR    + +  
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  213 bits (543), Expect = 2e-63
 Identities = 88/406 (21%), Positives = 170/406 (41%), Gaps = 5/406 (1%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
            +VR  A  +L   +     + L++  + + + L   D  + R  A          +   
Sbjct: 101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA 160

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
              A +     N   D +  VR   A++L E  + +  +  +S+++P +  L  D +  V
Sbjct: 161 -VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSV 219

Query: 122 RIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 181
           R+ A      I ++L  E     ++P +++ + D S  VR  +A     +   +G + T 
Sbjct: 220 RLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279

Query: 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS----QSLLPAIVELAEDRHWR 237
             L+P F +L+KD   +VR     K+ +  + +  D         +LP I EL  D +  
Sbjct: 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQH 339

Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           V+ A+   I  L+  LG     + L  L +  LKD+   +R    +N+  + E  G    
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399

Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
            Q ++P ++E+  +  +  R+ I++ + LLA  +G E    +L  + +    D V  I+ 
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIRE 459

Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 403
                L+ L+    +     +I P ++ +S DP+   R      + 
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  185 bits (470), Expect = 4e-53
 Identities = 61/331 (18%), Positives = 140/331 (42%), Gaps = 4/331 (1%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL--- 58
             VR   A    +    V     K++++  F+ L +D +  VR  A        + L   
Sbjct: 256 WRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315

Query: 59  -EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN 117
                 ++ ILP I     D +  V+  +A+ +  L   +G + T   ++P ++  L+D 
Sbjct: 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE 375

Query: 118 EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
             EVR+     +  +  ++      Q +LP + EL+ D+   VR A+   +  +A  LG 
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435

Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           +   E+L  + ++ L D    +R    S L ++ +  G +    +++P ++ ++ D ++ 
Sbjct: 436 EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYL 495

Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
            R+  +  I +L+   G       +    ++   D V ++R   A +++++         
Sbjct: 496 HRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 555

Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLA 328
              + P + ++  +     +    +A+++L+
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  165 bits (418), Expect = 1e-45
 Identities = 77/378 (20%), Positives = 146/378 (38%), Gaps = 6/378 (1%)

Query: 30  SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQ 89
           ++  +  +++   +RL +++    +   L  +   + +LP + +   D+   V   +A Q
Sbjct: 13  AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQ 71

Query: 90  LYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV 149
           L      VG       ++P    L    E  VR  A   +  I    +P     H +P V
Sbjct: 72  LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131

Query: 150 KELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 209
           K L+       R++ A  +  +       A   +L   F +L  D+ P VR    SKL +
Sbjct: 132 KRLAGGDWFTSRTS-ACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGE 190

Query: 210 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 269
             +V+ +D +   ++P    LA D    VRL  +E    +A  L     +  +     Q 
Sbjct: 191 FAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA 250

Query: 270 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 329
            +DK + +R   A+    L +  GP+     +VP    ++ +     R      +     
Sbjct: 251 AEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310

Query: 330 VMGSEIT----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE 385
            + ++       SQ+LP +     D   ++K  +A V+  L PI+ +    + + P  + 
Sbjct: 311 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLA 370

Query: 386 LSEDPDVDVRFFATQALQ 403
             +D   +VR      L 
Sbjct: 371 QLKDECPEVRLNIISNLD 388

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  145 bits (368), Expect = 9e-39
 Identities = 56/332 (16%), Positives = 123/332 (37%), Gaps = 6/332 (1%)

Query: 68  LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAG 127
           + V+++  +++  ++R     +L  +  A+G E TRS+++P     + D + EV +A A 
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70

Query: 128 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 187
           ++     ++     +  +LP ++ L++     VR      +  ++            +P+
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130

Query: 188 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 247
              L   ++   R +                +   L      L  D    VR A    + 
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYP-RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189

Query: 248 LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE 307
             A  L +     ++  +      D+  S+R  A      +A+    +     ++P + +
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ 249

Query: 308 MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367
              +  +  R  +    + L   +G EIT + L+P   N  KD    ++   +  ++   
Sbjct: 250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309

Query: 368 PIVDQSVVEK----SIRPCLVELSEDPDVDVR 395
             +     E      I PC+ EL  D +  V+
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVK 341

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  139 bits (351), Expect = 2e-36
 Identities = 56/298 (18%), Positives = 116/298 (38%), Gaps = 2/298 (0%)

Query: 105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSAL 164
             +   +  LR+ + ++R+ +  K++ I   L  E     +LP + +   D    V  AL
Sbjct: 10  YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLAL 68

Query: 165 ATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 224
           A  +     ++G    +  LLP   SL   E   VR   +  L  ++       L    +
Sbjct: 69  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128

Query: 225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN 284
           P +  LA    +  R +      +   ++       +L         D    +R AAA+ 
Sbjct: 129 PLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNLCSDDTPMVRRAAASK 187

Query: 285 VKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 344
           +   A+    D     I+P    + ++     R+  ++A   +A ++  E   + ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247

Query: 345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
             A++D+   +++ VA     L   V   + +  + P    L +D + +VR  A+  +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  113 bits (283), Expect = 2e-27
 Identities = 43/256 (16%), Positives = 94/256 (36%), Gaps = 3/256 (1%)

Query: 149 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 208
           + EL ++  Q +R      +  +A  LG + T  +LLP     + DE  +V L +  +L 
Sbjct: 16  IDELRNEDVQ-LRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQLG 73

Query: 209 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 268
               ++G       LLP +  LA      VR   +E +  ++ +      +     L  +
Sbjct: 74  TFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKR 133

Query: 269 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 328
                 ++ R +A                   +      + ++   + R      +   A
Sbjct: 134 LAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFA 192

Query: 329 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE 388
            V+  +   S+++P+  N + D   +++    +   ++  ++ Q  +E  + P L + +E
Sbjct: 193 KVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE 252

Query: 389 DPDVDVRFFATQALQS 404
           D    VR+        
Sbjct: 253 DKSWRVRYMVADKFTE 268

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  105 bits (264), Expect = 6e-25
 Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 4/225 (1%)

Query: 182 EQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR 239
           + L PI   +  L++E   +RLN I KL  +   +G++     LLP + +   D    V 
Sbjct: 7   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVL 65

Query: 240 LAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 299
           LA+ E +    + +G   +   L          +   +RD A  +++ ++ E  P     
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 359
           H VP V  +     +  R +     S+  P + S +  ++L     N   D  P ++   
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAA 184

Query: 360 AKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404
           A  L     +++   V+  I P    L+ D    VR  A +A  +
Sbjct: 185 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVN 229

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 14/93 (15%), Positives = 32/93 (34%)

Query: 4   VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
            R +    +   +           ++     +  D   +VR    +    +G +L+    
Sbjct: 496 HRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 555

Query: 64  VAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 96
            + + P++   +QD+   V+Y     L  L  A
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 85.7 bits (212), Expect = 3e-19
 Identities = 47/261 (18%), Positives = 80/261 (30%), Gaps = 85/261 (32%)

Query: 33  EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 92
            +   D     R +AV                   +  +    +D    VR  VA +L  
Sbjct: 56  VQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRL-- 98

Query: 93  LCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL 152
                  E            L+ D + EVRI  A ++                L  ++++
Sbjct: 99  -----PRE--------QLSALMFDEDREVRITVADRLP---------------LEQLEQM 130

Query: 153 SSDSSQHVRSALATVI-MGMAPILGKD-------ATIEQL-LPIFLSLLKDEFPDVRLNI 203
           ++D    VR+ +   I  G      +D          ++L       + +D  P+VR  +
Sbjct: 131 AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIV 190

Query: 204 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 263
            S+L                   ++EL  D  W VRLA +E+  L A +           
Sbjct: 191 ASRLRG---------------DDLLELLHDPDWTVRLAAVEHASLEALRE---------- 225

Query: 264 ALCMQWLKDKVYSIRDAAANN 284
                 L +    +R A A  
Sbjct: 226 ------LDEPDPEVRLAIAGR 240

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 37/216 (17%), Positives = 59/216 (27%), Gaps = 70/216 (32%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
            +VRR+ A  L +                    L  D+   VR+   +            
Sbjct: 88  EVVRRAVAYRLPR---------------EQLSALMFDEDREVRITVADRLP--------- 123

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVA-----NQLYELC----EAVGPEPTRSDVVPAYVR 112
                 L  +   + D+ + VR  V       +L+         V     +     +   
Sbjct: 124 ------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGL 177

Query: 113 LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 172
           + +D E EVR   A ++                   + EL  D    VR A         
Sbjct: 178 MTQDPEPEVRRIVASRLRG---------------DDLLELLHDPDWTVRLAAV------- 215

Query: 173 PILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 208
                    E      L  L +  P+VRL I  +L 
Sbjct: 216 ---------EHASLEALRELDEPDPEVRLAIAGRLG 242

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 34/275 (12%), Positives = 69/275 (25%), Gaps = 93/275 (33%)

Query: 137 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 196
           NP LA         +  +D     R+              + + +E L P    L++D  
Sbjct: 51  NPHLA--------VQYLADPFWERRAIAV-----------RYSPVEALTP----LIRDSD 87

Query: 197 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 256
             VR  +  +L +                 +  L  D    VR+ + + +P         
Sbjct: 88  EVVRRAVAYRLPR---------------EQLSALMFDEDREVRITVADRLP--------- 123

Query: 257 FFDDKLGALCMQWLKDKVYSIRDAAANN-----VKRLAEEFGPD---WAMQHIVPQVLE- 307
                      Q   D+ Y +R           + R   +          + +  + L  
Sbjct: 124 ------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGL 177

Query: 308 MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367
           M  +P    R  +   +                   ++    D    ++    +      
Sbjct: 178 MTQDPEPEVRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVE------ 216

Query: 368 PIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
                           +   ++PD +VR      L
Sbjct: 217 ----------HASLEALRELDEPDPEVRLAIAGRL 241

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 83.9 bits (207), Expect = 1e-18
 Identities = 34/196 (17%), Positives = 76/196 (38%), Gaps = 14/196 (7%)

Query: 216 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLKD 272
           +D+LS+ +     +  E++ W +R   +E +  L +   +L  G +   + AL     KD
Sbjct: 10  VDILSK-MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68

Query: 273 KVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 330
               +   A   +  LA+     ++      VP +LE            ++ A+      
Sbjct: 69  SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK----PNVVTALREAIDA 124

Query: 331 MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE----KSIRPCLVEL 386
           + +  +       ++ +  ++ P++K   A  +   +     + +     K +   LV+ 
Sbjct: 125 IYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184

Query: 387 SEDPDVDVRFFATQAL 402
             +PD  VR  + +AL
Sbjct: 185 LNEPDPTVRDSSAEAL 200

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 81.6 bits (201), Expect = 7e-18
 Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 13/218 (5%)

Query: 57  LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRLL 114
           LL+P D ++ +     +  ++K W +R      L +L              +V A  +++
Sbjct: 6   LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI 65

Query: 115 -RDNEAEVRIAAAGKVTKICRILNPELA--IQHILPCVKELSSDSSQHVRSALATVIMGM 171
            +D+   +   A   +  + + L    +      +P + E   +   +V +AL   I  +
Sbjct: 66  TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI 125

Query: 172 APILGKDATIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGIDLLSQSLLPAI 227
                   ++E      +  L ++ P V+      I++ L +         L + L  ++
Sbjct: 126 Y----ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181

Query: 228 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 265
           V+   +    VR +  E +  L   +G       L  +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 5/187 (2%)

Query: 19  VEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGAL---GKLLEPQDCVAHILPVIVNFS 75
           ++   + S++   F +  ++ + ++R  ++E    L      LE  +  A +  +    +
Sbjct: 7   LDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT 66

Query: 76  QDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 133
           +D +  +  M    L  L + +        S  VP+ +   ++ +  V  A    +  I 
Sbjct: 67  KDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY 126

Query: 134 RILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 193
              + E   + I+  +   +          +A  +    P       ++ L    +  L 
Sbjct: 127 ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186

Query: 194 DEFPDVR 200
           +  P VR
Sbjct: 187 EPDPTVR 193

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 52/293 (17%), Positives = 98/293 (33%), Gaps = 48/293 (16%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQ---DDQDSVRLLAVEGCGALGKLL 58
              +R A+   G +    +            +EL +   D     R+ +      L    
Sbjct: 4   TYQKRKASKEYGLYNQCKKLN---------DDELFRLLDDHNSLKRISSAR---VLQLRG 51

Query: 59  EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE 118
                    + + + F  DK++  R + A  L ++   +  +   +         L D  
Sbjct: 52  GQD-----AVRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNILNNMALNDKS 104

Query: 119 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 178
           A VR  A     + C+     +    I+   +  + D S +VR A A  I      +   
Sbjct: 105 ACVRATAIESTAQRCK--KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV----INDK 158

Query: 179 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 238
           ATI  L+     LLKD   DVR      ++           +  +    VE+ +D++  V
Sbjct: 159 ATIPLLIN----LLKDPNGDVRNWAAFAINI------NKYDNSDIRDCFVEMLQDKNEEV 208

Query: 239 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 291
           R+  I  +    S       D ++ ++    LK    ++ D        L ++
Sbjct: 209 RIEAIIGL----SYRK----DKRVLSVLCDELKKN--TVYDDIIEAAGELGDK 251

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 37/286 (12%), Positives = 82/286 (28%), Gaps = 42/286 (14%)

Query: 43  VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 102
            +  A +     G   + +         +     D +   R   A  L       G +  
Sbjct: 6   QKRKASK---EYGLYNQCKKLN---DDELFRLLDDHNSLKRISSARVLQLR----GGQ-- 53

Query: 103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 162
             D V   +    D     R   A  + +I      E  + +IL       +D S  VR+
Sbjct: 54  --DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL--NNMALNDKSACVRA 109

Query: 163 ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 222
                               +++        D+  +VR      +          +  ++
Sbjct: 110 TAIESTAQRCKK--NPIYSPKIVEQSQITAFDKSTNVRRATAFAISV--------INDKA 159

Query: 223 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 282
            +P ++ L +D +  VR      I +          +  +    ++ L+DK   +R  A 
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAI 213

Query: 283 NNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 328
             +    ++         ++  + + +          I++A   L 
Sbjct: 214 IGLSYRKDK--------RVLSVLCDELKKNT--VYDDIIEAAGELG 249

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 42/247 (17%), Positives = 79/247 (31%), Gaps = 32/247 (12%)

Query: 156 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 215
           S+ + +   +           K    ++L      LL D     R++    L        
Sbjct: 2   SNTYQKRKASKEYGLYNQ--CKKLNDDELFR----LLDDHNSLKRISSARVLQLRG---- 51

Query: 216 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVY 275
                Q  +   +E   D+++  R        L   ++     D+    L    L DK  
Sbjct: 52  ----GQDAVRLAIEFCSDKNYIRRDIGAFI--LGQIKICKKCEDNVFNILNNMALNDKSA 105

Query: 276 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 335
            +R  A  +  +  ++         IV Q      +     R     AIS         I
Sbjct: 106 CVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAIS--------VI 155

Query: 336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVR 395
                +P++IN  KD   +++   A  + ++    +  +       C VE+ +D + +VR
Sbjct: 156 NDKATIPLLINLLKDPNGDVRNWAAFAI-NINKYDNSDIR-----DCFVEMLQDKNEEVR 209

Query: 396 FFATQAL 402
             A   L
Sbjct: 210 IEAIIGL 216

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 71.3 bits (174), Expect = 3e-14
 Identities = 34/209 (16%), Positives = 82/209 (39%), Gaps = 10/209 (4%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             V ++A + +   A T E    +  +  +F  L + +   +     +  G + K  E  
Sbjct: 46  WTVVKNAISIIMVIAKTREDL-YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK--EKP 102

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           + V  ++PV+    +    + +  V+  L E+ +A  P    + +V  ++ +L     E 
Sbjct: 103 ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPM-LMASIVRDFMSMLSSKNRED 160

Query: 122 RIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 181
           ++ A   +  +    N    +   LP +  L  D  + VR++    ++ +A     +  +
Sbjct: 161 KLTALNFIEAMGE--NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLAT---LNDKL 215

Query: 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQV 210
            +++   L  L D    V   +   + ++
Sbjct: 216 RKVVIKRLEELNDTSSLVNKTVKEGISRL 244

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 70.9 bits (173), Expect = 4e-14
 Identities = 39/257 (15%), Positives = 101/257 (39%), Gaps = 11/257 (4%)

Query: 76  QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 135
           +++ + +R  +AN    L + +        V+   + LL D+   V   A   +  I + 
Sbjct: 4   EEEEFDIREALANG-EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK- 61

Query: 136 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 195
              +L    +      L    +  +   +A     MA    +   ++ ++P+  +  +  
Sbjct: 62  TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKSMIPVLFANYRIG 119

Query: 196 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 255
               ++N+   L+++ +   + +   S++   + +   ++   +L  + +I  +      
Sbjct: 120 DEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF 176

Query: 256 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 315
            + +  L  + +  L D    +R +A   +  LA     +  ++ +V + LE +N+   L
Sbjct: 177 KYVNPFLPRI-INLLHDGDEIVRASAVEALVHLATL---NDKLRKVVIKRLEELNDTSSL 232

Query: 316 YRMTILQAISLLAPVMG 332
              T+ + IS L  + G
Sbjct: 233 VNKTVKEGISRLLLLEG 249

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 65.1 bits (158), Expect = 3e-12
 Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 16/254 (6%)

Query: 6   RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 65
           R A  N       +  A     ++    EL  DD  +V   A+     + K         
Sbjct: 11  REALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK-TREDLYEP 69

Query: 66  HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 125
            +  +     + ++  +   +A    ++ +          ++P      R  + + +I  
Sbjct: 70  MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV--KSMIPVLFANYRIGDEKTKINV 127

Query: 126 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 185
           +  + +I +  NP L +  I+     + S  ++  +      I  M     K   +   L
Sbjct: 128 SYALEEIAKA-NPML-MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK--YVNPFL 183

Query: 186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE---DRHWRVRLAI 242
           P  ++LL D    VR + +  L      + +  L+  L   +++  E   D    V   +
Sbjct: 184 PRIINLLHDGDEIVRASAVEAL------VHLATLNDKLRKVVIKRLEELNDTSSLVNKTV 237

Query: 243 IEYIPLLASQLGVG 256
            E I  L    G  
Sbjct: 238 KEGISRLLLLEGHS 251

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 33/211 (15%), Positives = 84/211 (39%), Gaps = 8/211 (3%)

Query: 192 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 251
           +++E  D+R   ++  + + +++ +    +S+L  ++EL +D  W V    I  I ++A 
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 252 QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 311
                 ++  L  L     K +   +    A    ++A+E      ++ ++P +      
Sbjct: 62  T-REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYRI 118

Query: 312 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 371
                ++ +  A+  +A      +  + ++   ++    +    K      ++++     
Sbjct: 119 GDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176

Query: 372 QSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
           + V      P ++ L  D D  VR  A +AL
Sbjct: 177 KYV--NPFLPRIINLLHDGDEIVRASAVEAL 205

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 26/177 (14%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 4   VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
           + +  A   G+ A   E   L   ++ +     +   +  ++        + K       
Sbjct: 86  LTQEIAKAFGQMAK--EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--ML 141

Query: 64  VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
           +A I+   ++    K+   +    N +  + E        +  +P  + LL D +  VR 
Sbjct: 142 MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYVNPFLPRIINLLHDGDEIVRA 199

Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           +A   +  +   LN +  ++ ++    E  +D+S  V   +   I  +  + G  ++
Sbjct: 200 SAVEALVHLAT-LNDK--LRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 68.3 bits (166), Expect = 2e-12
 Identities = 45/406 (11%), Positives = 125/406 (30%), Gaps = 60/406 (14%)

Query: 33  EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQ 89
                    ++R  +      L  +    + + HILP++        W V+    +V   
Sbjct: 327 GGDDTISDWNLRKCSAAALDVLANVY-RDELLPHILPLLKELLFHHEWVVKESGILVLGA 385

Query: 90  LYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH---IL 146
           + E C      P   +++P  ++ L D +A VR      +++    +  +    +   ++
Sbjct: 386 IAEGCMQGM-IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444

Query: 147 PCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNII 204
             + +   DS++ V+ A  +    +      +    +  +L   +           L + 
Sbjct: 445 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILY 504

Query: 205 SKLDQVNQVIGIDLLSQSLLPAIVEL------AEDRHWRVRLAIIEYIPLLASQLGVGF- 257
             +  +   +G  L     +  ++              +    ++E +  +A+ L  GF 
Sbjct: 505 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 564

Query: 258 -FDDKLGALCMQWLKDKVYSIR---------------------DAAANNVKRLAEEFGPD 295
            + + +   C+  ++  +                         D  +   + L       
Sbjct: 565 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQL 624

Query: 296 WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVP 353
            A  +I+  + + + +     R +    +  L       +    +  +P++         
Sbjct: 625 VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI 684

Query: 354 NIKFN-------------------VAKVLQSLIPIVDQSVVEKSIR 380
           ++  N                   +  VL  L+ I+++    K++ 
Sbjct: 685 SVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLL 730

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 69/442 (15%), Positives = 144/442 (32%), Gaps = 89/442 (20%)

Query: 4   VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE---- 59
           ++R+    L +     +  +    ++ +  +L  +D+   R L+      L   ++    
Sbjct: 29  IQRTVQQKLEQLNQYPDFNNY---LIFVLTKLKSEDEP-TRSLS---GLILKNNVKAHFQ 81

Query: 60  --PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN 117
             P      I    +N   D S  +R  V   +  +      +    D++P    LL   
Sbjct: 82  NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSE 140

Query: 118 EAEVRIAAAGKVTKICRILNPEL-------AIQHILPCVKELSSDSSQHVRSALATVIMG 170
           +      A G + KIC      L        +  ++P   +    SS  +RS     +  
Sbjct: 141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ 200

Query: 171 MAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPA 226
                 +     I+  +    +L  DE P+VR N+   L  + +V    LL    +++  
Sbjct: 201 FIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEY 260

Query: 227 IVELAEDRHWRVRLAIIEYIPLLASQ-LGVGFFDDKLGALCMQWLK-------------- 271
           +++  +D+   V L   E+   LA Q +        L  L    +               
Sbjct: 261 MLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320

Query: 272 -----------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTI 320
                         +++R  +A  +  LA  +  D  + HI+P + E++ +  ++ + + 
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESG 379

Query: 321 LQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR 380
           +  +  +A                                  +Q +IP + + +      
Sbjct: 380 ILVLGAIA-------------------------------EGCMQGMIPYLPELI------ 402

Query: 381 PCLVELSEDPDVDVRFFATQAL 402
           P L++   D    VR      L
Sbjct: 403 PHLIQCLSDKKALVRSITCWTL 424

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 57.5 bits (138), Expect = 5e-09
 Identities = 57/386 (14%), Positives = 129/386 (33%), Gaps = 27/386 (6%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
            +VR      L ++A  V +    + +  +  EL +   DS + +    C A   L E  
Sbjct: 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473

Query: 62  D-----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD 116
                  +A+IL  +V        +   ++ + +  L ++VG    + + +   +  L  
Sbjct: 474 CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ 533

Query: 117 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 176
                      K   +         +   L  V              +    + +     
Sbjct: 534 -----------KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTL 582

Query: 177 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS-LLPAIVELAEDRH 235
             A +    P        +F  V L+++S L +        L+++S +L  + +  +D+ 
Sbjct: 583 AQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM 642

Query: 236 WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 293
             VR +    +  L                 +    L  +  S+ + A   +  ++ + G
Sbjct: 643 PEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG 702

Query: 294 PDWA--MQHIVPQVLEMINNPHYLYRMT--ILQAISLLAPVMGSEITCSQLLPVVINASK 349
            +    +  ++ Q++E+IN P+    +       I  L  V   E+  + +L   I    
Sbjct: 703 IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV--APMLQQFIRPWC 760

Query: 350 DRVPNIKFNVAK--VLQSLIPIVDQS 373
             + NI+ N  K    + +  ++  +
Sbjct: 761 TSLRNIRDNEEKDSAFRGICTMISVN 786

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 45/301 (14%), Positives = 105/301 (34%), Gaps = 22/301 (7%)

Query: 26  SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM 85
            +I+ + +E    D   ++    +    L +L +  D   + L  ++   + +    R +
Sbjct: 13  QQILQLLKESQSPDTT-IQRTVQQ---KLEQLNQYPDFNNY-LIFVLTKLKSEDEPTRSL 67

Query: 86  VA----NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---- 137
                 N +    +   P      +    +  + D+   +R      +T I         
Sbjct: 68  SGLILKNNVKAHFQNF-PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW 126

Query: 138 PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKD 194
           P+L +  +   +     ++ +    AL  +    A IL  D     +  ++P FL   K 
Sbjct: 127 PDL-LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH 185

Query: 195 EFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 252
             P +R + ++ ++Q        L+    S +  +  LA D    VR  +   + +L   
Sbjct: 186 SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245

Query: 253 LGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN 310
                      +    +Q  +D+  ++   A      LAE+      +   +P+++ ++ 
Sbjct: 246 RMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV 305

Query: 311 N 311
           N
Sbjct: 306 N 306

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 12/150 (8%)

Query: 264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQ 322
           + C+  + D    IR      +  +A +     W    ++P++  ++++  Y        
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSLLDSEDYNTCEGAFG 150

Query: 323 AISLLAPVMGSEITCSQ-------LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 375
           A+  +       +           ++P  +   K   P I+ +    +   I    Q+++
Sbjct: 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210

Query: 376 EK--SIRPCLVELSEDPDVDVRFFATQALQ 403
               S    L  L+ D + +VR    +AL 
Sbjct: 211 LHIDSFIENLFALAGDEEPEVRKNVCRALV 240

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 60/403 (14%), Positives = 138/403 (34%), Gaps = 36/403 (8%)

Query: 28  IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------QDCVAHILPVIVNFSQDKSWR 81
           I ++ E++T  D+D  R +A      L   L+        D    ++ +I+   +DK+  
Sbjct: 8   ISNLLEKMTSSDKD-FRFMATN---DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63

Query: 82  VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-- 139
           V+ +    L  L   V  E     +V      +  ++ ++R  ++  +  +   L P   
Sbjct: 64  VQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122

Query: 140 ------LAIQHILPCVKELSSDSS-----QHVRSALATVIMGMAPILGKDATIEQLLPIF 188
                    + I   +    +              +A ++     +L        +L   
Sbjct: 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCL 180

Query: 189 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 248
           L  L      VR   I  L  +    G  +    +   + EL+++         I+ I  
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

Query: 249 LASQLGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQ 304
           ++ Q G    +  +K+  L +++       +R+      +        +    +  I+  
Sbjct: 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINI 300

Query: 305 VLEMIN-NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 363
            L+ +  +P+Y Y        ++ A     +    Q      +   D    ++   AK L
Sbjct: 301 CLKYLTYDPNYNYDDEDEDENAMDADGGDDD---DQGSDDEYSDDDDMSWKVRRAAAKCL 357

Query: 364 QSLIPIVDQSVVE--KSIRPCLVELSEDPDVDVRFFATQALQS 404
            +++    + + E  K++ P L+   ++ + +V+     A  S
Sbjct: 358 DAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 400

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 62.0 bits (149), Expect = 2e-10
 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 15/240 (6%)

Query: 179 ATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 235
           A+    +   L  +     D R    N +    Q + +   D   + ++  I++L ED++
Sbjct: 2   ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN 61

Query: 236 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 295
             V+   ++ +  L S++     +  +  LC   +      +RD ++  +K +  E  P 
Sbjct: 62  GEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN-MLSDKEQLRDISSIGLKTVIGELPPA 120

Query: 296 WAMQHIVPQVLEMI---------NNPHYLYRMTILQAISLLAPVMGSEITCS--QLLPVV 344
            +   +   V + I                ++  L  ++ +    G  +      +L  +
Sbjct: 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 180

Query: 345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404
           +         ++      L  L+      V    I   L ELS++  +       Q + +
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 60.1 bits (144), Expect = 8e-10
 Identities = 57/391 (14%), Positives = 112/391 (28%), Gaps = 40/391 (10%)

Query: 12  LGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVI 71
           L +    +   H    I++         + +VR   +   G L         V  I  ++
Sbjct: 162 LSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 219

Query: 72  VNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 129
              S++ S          +  +    G         ++P  V+    ++ E+R       
Sbjct: 220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279

Query: 130 TKICRILNPELAI---QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 186
               R    E+       I  C+K L+ D + +            A     D   +Q   
Sbjct: 280 ESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD---DQGSD 336

Query: 187 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIE 244
              S   D    VR      LD V       L    +++ PA++   ++R   V+  +  
Sbjct: 337 DEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFH 396

Query: 245 YIPLLASQLGVGFFD---------------------DKLGALCMQWLKDKVYSIRDAAAN 283
               L  Q                              +     + +K+K    R    N
Sbjct: 397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN 456

Query: 284 NVKRLAEEFGPDWA--MQHIVPQVLEMINNPHY--LYRMTILQAISLLAPVMGSEIT--- 336
            +  L           +  +VP ++  +N+       ++  L  + ++      ++    
Sbjct: 457 MLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPH 516

Query: 337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367
              L+P V+    D    I      V Q L+
Sbjct: 517 VQALVPPVVACVGDPFYKITSEALLVTQQLV 547

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 54.3 bits (129), Expect = 4e-08
 Identities = 41/244 (16%), Positives = 90/244 (36%), Gaps = 15/244 (6%)

Query: 1    MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
               +R  A  +LG+    ++ +    E+ S+  E      + V+  A    G++      
Sbjct: 831  TDSIRLLALLSLGEVGHHIDLSGQL-ELKSVILEAFSSPSEEVKSAASYALGSISV---- 885

Query: 61   QDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL---CEAVGPEPTRSDVVPAYVRLLRDN 117
               +   LP ++        + +Y++ + L E+      VG +P   ++    ++     
Sbjct: 886  -GNLPEYLPFVLQ-EITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECA 943

Query: 118  EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
            E   R   A  + K+  I +PE  +  +   +   SS +   V +A+   I      +  
Sbjct: 944  EEGTRNVVAECLGKLTLI-DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI-- 1000

Query: 178  DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRH 235
            D  ++  +  FL  L+D   +VR   +   +         +     ++LP +    + R 
Sbjct: 1001 DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRK 1060

Query: 236  WRVR 239
              +R
Sbjct: 1061 ELIR 1064

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.9 bits (120), Expect = 6e-07
 Identities = 57/420 (13%), Positives = 127/420 (30%), Gaps = 26/420 (6%)

Query: 2    PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE-- 59
             + R +    L   A +     L+  +      L    + + R L +    AL  L++  
Sbjct: 622  EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681

Query: 60   ----PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRL 113
                    +  +L  +     +    V  M  + L  L +            ++   + L
Sbjct: 682  SDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGL 741

Query: 114  LRD-------NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALAT 166
            +R          A +    A  VT    +   +L      P   + ++ + +    ++A 
Sbjct: 742  VRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAK 801

Query: 167  VIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 226
             +  +     K+        I           +RL  +  L +V   I +      L   
Sbjct: 802  CVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG-QLELKSV 860

Query: 227  IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 286
            I+E        V+ A    +  ++      +    L  +  Q    + Y +  +    + 
Sbjct: 861  ILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQP--KRQYLLLHSLKEIIS 918

Query: 287  RLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN 346
              +      +  ++I   +L+         R  + + +  L  +    +     LP +  
Sbjct: 919  SASVVGLKPYV-ENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-----LPRLKG 972

Query: 347  ASKDRVPNIKFNVAKVLQSLIPIVDQSVVE--KSIRPCLVELSEDPDVDVRFFATQALQS 404
                     + +V   ++  I    Q +    K+     ++  EDPD++VR  A     S
Sbjct: 973  YLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1032

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 63.7 bits (154), Expect = 5e-11
 Identities = 47/362 (12%), Positives = 114/362 (31%), Gaps = 28/362 (7%)

Query: 27  EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRY-- 84
            +++   E  +DD  +V + A        +       +  +L  +       +WR R   
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQN-CGNHILEPVLEFVEQNITADNWRNREAA 389

Query: 85  -MVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 143
            M    + +  + V         +P+ + L+ D   +V+   A  + +I   +   +  Q
Sbjct: 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449

Query: 144 H----ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDV 199
                ++        D  +   +   T+I            +EQL     S + + +P +
Sbjct: 450 QHLPGVVQACLIGLQDHPKVATNCSWTIIN----------LVEQLAEATPSPIYNFYPAL 499

Query: 200 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF 257
              +I   ++++          S   A+  + E     V          +  +LG  +  
Sbjct: 500 VDGLIGAANRIDN---EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSV 556

Query: 258 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY-LY 316
            +++L     Q L++   +I    A  +++      P      ++     ++        
Sbjct: 557 DENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADMLMGLFFRLLEKKDSAFI 614

Query: 317 RMTILQAISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 374
              +  AIS LA  +G           P ++ A       +       +  +   +++  
Sbjct: 615 EDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDF 674

Query: 375 VE 376
             
Sbjct: 675 RR 676

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 60/441 (13%), Positives = 136/441 (30%), Gaps = 62/441 (14%)

Query: 2   PMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 57
             VR +A   L      ++        ++ +M +  E TQ +   V+       G L K+
Sbjct: 195 KAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQ---AAAFGCLCKI 251

Query: 58  LE--PQDCVAHILPVI----VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV 111
           +         ++   +    +   +  + +V  M       +CE            P   
Sbjct: 252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP 311

Query: 112 RLLR--------------------------DNEAEVRIAAAGKVTKICRILNPELAIQHI 145
                                         D++  V ++A   +    +       ++ +
Sbjct: 312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ-NCGNHILEPV 370

Query: 146 LPCVKELSSDSSQHVR----SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVR- 200
           L  V++  +  +   R     A  +++ G   +      + Q LP  L+L+ D+   V+ 
Sbjct: 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTY-YVHQALPSILNLMNDQSLQVKE 429

Query: 201 --LNIISKL-DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA------IIEYIPLLAS 251
                I ++ D V + I        ++ A +   +D              ++E +     
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATP 489

Query: 252 QLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEM 308
                F+   +  L     + D  ++ R +A + +  + E      A     I   V++ 
Sbjct: 490 SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549

Query: 309 INNP-HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367
           +            L+    L  +  + +T    L  VI  S   V  +   +  +   L+
Sbjct: 550 LGQTMSVDENQLTLEDAQSLQELQSNILTV---LAAVIRKSPSSVEPVADMLMGLFFRLL 606

Query: 368 PIVDQSVVEKSIRPCLVELSE 388
              D + +E  +   +  L+ 
Sbjct: 607 EKKDSAFIEDDVFYAISALAA 627

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 6e-11
 Identities = 78/472 (16%), Positives = 144/472 (30%), Gaps = 158/472 (33%)

Query: 18  TVEAAHLKSEIMSIFEELTQDD------QDSVR-LLAVEGCGALGKLLEPQDCVAHILPV 70
           T E  +   +I+S+FE+   D+      QD  + +L+ E       ++  +D V+  L +
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTLRL 67

Query: 71  IVNFSQDKSWRVRYMVANQL---YE-LCEAVGPEPT-RSDVVPAYV----RLLRDNEAEV 121
                  +   V+  V   L   Y+ L   +  E    S +   Y+    RL  DN+   
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--- 124

Query: 122 RIAAAGKVTK--ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-- 177
                    K  + R+  P L ++  L    EL        R A   +I G+    GK  
Sbjct: 125 ------VFAKYNVSRL-QPYLKLRQAL---LEL--------RPAKNVLIDGVLGS-GKTW 165

Query: 178 -------DATIEQLLP--IF-LSLLKDEFPDVRLNIISKL---------DQVNQVIGIDL 218
                     ++  +   IF L+L     P+  L ++ KL          + +    I L
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 219 LSQSLLPAIVELAEDR----------------HWRV------------------RLAIIE 244
              S+   +  L + +                 W                     L+   
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 245 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 304
              +      +    D++ +L +++L  +            + L  E      +    P+
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-----------PQDLPRE------VLTTNPR 328

Query: 305 VLEMI-----NNP-------HYLY---RMTILQAISLLAPVMGSEI-----TCSQLLPVV 344
            L +I     +         H         I  ++++L P   +E        S + P  
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLS-VFP-- 382

Query: 345 INASKD-RVPNIKFNVAKVLQSL----IPIVDQSVVEKSIRPCLVELSEDPD 391
                   +P        +L  +    I      VV K  +  LVE  + P 
Sbjct: 383 ----PSAHIP------TILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPK 422

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 52/321 (16%), Positives = 103/321 (32%), Gaps = 94/321 (29%)

Query: 27  EIMSIFEELTQDDQDSVRLLAVEGCGALGK-LLEPQDCVAHIL------PVI-VNFSQDK 78
             + + + L +      + + ++G    GK  +    C+++ +       +  +N     
Sbjct: 136 PYLKLRQALLELR--PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 79  SWRVRYMVANQLY--------ELCEAVGPEPTRSDVVPAYVR-LLR-----------DNE 118
           S      +  +L            +       R   + A +R LL+            N 
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 119 AEVRIAAAGKVTKICRIL----NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 174
              +   A  ++  C+IL      ++           LS+ ++ H+       +   +  
Sbjct: 254 QNAKAWNAFNLS--CKILLTTRFKQVT--------DFLSAATTTHIS------LDHHSMT 297

Query: 175 LGKDATIEQLLPIFLSLLKDEFPD-------VRLNIISKL----------------DQVN 211
           L  D   + LL  +L     + P         RL+II++                 D++ 
Sbjct: 298 LTPDEV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 212 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE---YIP--LLA------SQLGVGFFDD 260
            +I   L    L PA     E R    RL++     +IP  LL+       +  V    +
Sbjct: 357 TIIESSL--NVLEPA-----EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 261 KL--GALCMQWLKDKVYSIRD 279
           KL   +L  +  K+   SI  
Sbjct: 410 KLHKYSLVEKQPKESTISIPS 430

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 42/208 (20%), Positives = 76/208 (36%), Gaps = 40/208 (19%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             VRR+AA  LGK         L         +  +D+   VR  A +   ALG++ + +
Sbjct: 33  YYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---ALGQIGDER 81

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
                 +  ++   +D+   VR   A  L ++ +           V   ++ L+D +  V
Sbjct: 82  -----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDEDWFV 128

Query: 122 RIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 181
           RIAAA         L  E+  +  +  + +   D    VR + A         LG+    
Sbjct: 129 RIAAA-------FAL-GEIGDERAVEPLIKALKDEDGWVRQSAADA-------LGEIGG- 172

Query: 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQ 209
           E++      L +      R   ++ L+ 
Sbjct: 173 ERVRAAMEKLAETGTGFARKVAVNYLET 200

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 40/213 (18%)

Query: 34  ELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 93
           +  QDD   VR  A     ALGK+ + +      +  ++   +D+   VR   A+ L   
Sbjct: 26  KNLQDDSYYVRRAAAY---ALGKIGDERA-----VEPLIKALKDEDAWVRRAAADAL--- 74

Query: 94  CEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 153
              +G E      V   ++ L+D +  VR +AA  + +I      E A++ ++  +K   
Sbjct: 75  -GQIGDE----RAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALK--- 122

Query: 154 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213
            D    VR A A   +G    +G +  +E L+      LKDE   VR +    L +    
Sbjct: 123 -DEDWFVRIA-AAFALGE---IGDERAVEPLIK----ALKDEDGWVRQSAADALGE---- 169

Query: 214 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 246
           IG     + +  A+ +LAE      R   + Y+
Sbjct: 170 IG----GERVRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 40/215 (18%)

Query: 68  LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAG 127
           + + +   QD S+ VR   A  L ++ +           V   ++ L+D +A VR AAA 
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDE--------RAVEPLIKALKDEDAWVRRAAAD 72

Query: 128 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 187
            + +I      E A++ ++    +   D    VR + A V +G    +G +  +E L+  
Sbjct: 73  ALGQI----GDERAVEPLI----KALKDEDGWVRQS-AAVALGQ---IGDERAVEPLIK- 119

Query: 188 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 247
               LKDE   VR+     L ++          +  +  +++  +D    VR +  + + 
Sbjct: 120 ---ALKDEDWFVRIAAAFALGEIG--------DERAVEPLIKALKDEDGWVRQSAADAL- 167

Query: 248 LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 282
               ++G     +++ A   +  +      R  A 
Sbjct: 168 ---GEIG----GERVRAAMEKLAETGTGFARKVAV 195

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 48/235 (20%)

Query: 172 APILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 231
           AP+      +E  +      L+D+   VR      L ++          +  +  +++  
Sbjct: 12  APLRADPEKVEMYIK----NLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKAL 59

Query: 232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLKDKVYSIRDAAANNVKRLA 289
           +D    VR A  + +         G   D+  +  L ++ LKD+   +R +AA  + ++ 
Sbjct: 60  KDEDAWVRRAAADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIG 109

Query: 290 EEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK 349
           +E          V  +++ + +  +  R   + A   L      EI   + +  +I A K
Sbjct: 110 DE--------RAVEPLIKALKDEDWFVR---IAAAFALG-----EIGDERAVEPLIKALK 153

Query: 350 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404
           D    ++ + A  L  +          + +R  + +L+E      R  A   L++
Sbjct: 154 DEDGWVRQSAADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLET 200

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 45/230 (19%)

Query: 53  ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR 112
                 +P+      + + +   QD S+ VR   A  L      +G E      V   ++
Sbjct: 6   HHHHHTDPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDE----RAVEPLIK 52

Query: 113 LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 172
            L+D +A VR AAA  + +I      E A++ ++    +   D    VR + A V +G  
Sbjct: 53  ALKDEDAWVRRAAADALGQI----GDERAVEPLI----KALKDEDGWVRQS-AAVALGQ- 102

Query: 173 PILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 232
             +G +  +E L+      LKDE   VR+     L +    IG     +  +  +++  +
Sbjct: 103 --IGDERAVEPLIK----ALKDEDWFVRIAAAFALGE----IG----DERAVEPLIKALK 148

Query: 233 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 282
           D    VR +  + +     ++G     +++ A   +  +      R  A 
Sbjct: 149 DEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAV 190

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 40/208 (19%), Positives = 75/208 (36%), Gaps = 40/208 (19%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             VRR+AA  LGK         L         +  +D+   VR  A +   ALG++ + +
Sbjct: 28  YYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---ALGQIGDER 76

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
                 +  ++   +D+   VR   A  L ++ +           V   ++ L+D +  V
Sbjct: 77  -----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDEDWFV 123

Query: 122 RIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 181
           RIAAA         L  E+  +  +  + +   D    VR + A  +  +          
Sbjct: 124 RIAAA-------FAL-GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-------- 167

Query: 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQ 209
           E++      L +      R   ++ L+ 
Sbjct: 168 ERVRAAMEKLAETGTGFARKVAVNYLET 195

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 40/211 (18%)

Query: 34  ELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 93
           +  QDD   VR  A     ALGK+ + +      +  ++   +D+   VR   A+ L ++
Sbjct: 21  KNLQDDSYYVRRAAAY---ALGKIGDER-----AVEPLIKALKDEDAWVRRAAADALGQI 72

Query: 94  CEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 153
            +           V   ++ L+D +  VR +AA  + +I      E A++ ++  +K   
Sbjct: 73  GDE--------RAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALK--- 117

Query: 154 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 213
            D    VR A A   +G    +G +  +E L+      LKDE   VR +    L +    
Sbjct: 118 -DEDWFVRIA-AAFALGE---IGDERAVEPLIK----ALKDEDGWVRQSAADALGE---- 164

Query: 214 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 244
           IG     + +  A+ +LAE      R   + 
Sbjct: 165 IG----GERVRAAMEKLAETGTGFARKVAVN 191

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 37/225 (16%), Positives = 86/225 (38%), Gaps = 44/225 (19%)

Query: 182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 241
            + + +++  L+D+   VR      L ++          +  +  +++  +D    VR A
Sbjct: 13  PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRA 64

Query: 242 IIEYIPLLASQLGVGFFDDK--LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 299
             + +         G   D+  +  L ++ LKD+   +R +AA  + ++ +E        
Sbjct: 65  AADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIGDE-------- 106

Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 359
             V  +++ + +  +  R   + A   L      EI   + +  +I A KD    ++ + 
Sbjct: 107 RAVEPLIKALKDEDWFVR---IAAAFALG-----EIGDERAVEPLIKALKDEDGWVRQSA 158

Query: 360 AKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404
           A  L  +          + +R  + +L+E      R  A   L++
Sbjct: 159 ADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLET 195

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 49/357 (13%), Positives = 122/357 (34%), Gaps = 34/357 (9%)

Query: 43  VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 102
           VR  A      +  L+ P D    I+  +V F     W+V++     L  L E V  +  
Sbjct: 244 VRDAAAYLLSRIYPLIGPND----IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKD- 298

Query: 103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 162
              +    V LL   + ++++ +A  +       + +L ++     ++     S      
Sbjct: 299 --GLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS-----V 351

Query: 163 ALATVIMGMAPILGKDATIE---QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 219
           +  + +  +  I  ++  +    + L           P+VR +I++ +  +++     L+
Sbjct: 352 SKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLV 411

Query: 220 SQSLL----PAIVELAEDRHWRVRLAIIE-YIPLLASQLGVGFF-----DDKLGALCMQW 269
           ++ +L      I E+A  +  + R  + +  I    + +G   +     DD +    + +
Sbjct: 412 AEVVLIEEKDEIREMAI-KLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYF 470

Query: 270 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 329
            K  +  +        + L  E      +  +   +    +   ++     +QA+    P
Sbjct: 471 TKSGINVVGKDEILKNRCLLFECIMKSGLPDLQSTIETTTSRT-FISLYRSVQALVKDTP 529

Query: 330 VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 386
              + I         +    DR  ++K    K  +  +       +   + P   + 
Sbjct: 530 YTPANIE-------ELEYYFDRCKDLKMAPLKEFKKKLSAPGIRSIHPMVDPLYSDY 579

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 52.0 bits (124), Expect = 8e-08
 Identities = 23/193 (11%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 229 ELAEDRHWRVRLAIIE--YIPLLAS----QLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 282
           E      W+ R+  +E  +  +L+     +     + + LG       KD        AA
Sbjct: 23  ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82

Query: 283 NNVKRLAEEFGPDWAMQH----IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC- 337
            +V+ + ++       +     +   +L+            I +A+  +        +  
Sbjct: 83  QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG 142

Query: 338 --SQLLPVVINASKDRVPNIKFNVAKVLQSLI------PIVDQSVVEKSIRPCLVELSED 389
               +L  ++   K + P I+    ++  + +          Q  ++  + P ++++  D
Sbjct: 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND 202

Query: 390 PDVDVRFFATQAL 402
               +R    ++ 
Sbjct: 203 TQPAIRTIGFESF 215

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 28/217 (12%), Positives = 71/217 (32%), Gaps = 19/217 (8%)

Query: 57  LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYV 111
           +L  +  +  +            W+ R     + ++   +   +        S+++  Y 
Sbjct: 7   MLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYG 66

Query: 112 RLL-RDNEAEVRIAAAGKVTKICRILNPELAIQH----ILPCVKELSSDSSQHVRSALAT 166
            ++ +D   +    AA  V  IC  L      +     +   + + + +    V  A+  
Sbjct: 67  HIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 126

Query: 167 VIMGMAPILGKDA---TIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGI--D 217
            ++ +       A     E +L   L  +K + P +R     + +  + +          
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186

Query: 218 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 254
            L   ++P ++++  D    +R    E   +L    G
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 23/191 (12%), Positives = 68/191 (35%), Gaps = 17/191 (8%)

Query: 26  SEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLEPQD----CVAHILPVIVNFSQDKSW 80
           S ++ I+  + Q D +     LA +    +   L+        V+ +   +++ +++K  
Sbjct: 59  SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKP 118

Query: 81  RVRYMVANQLYELCE---AVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 137
            V   +   L  +C+    +       D++   +  ++    ++R+          +   
Sbjct: 119 SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178

Query: 138 ------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQLLPIF 188
                        ++P V ++ +D+   +R+        +  I G +    T+E L  + 
Sbjct: 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLK 238

Query: 189 LSLLKDEFPDV 199
              +++    +
Sbjct: 239 RKKIEETVKTL 249

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 21/159 (13%), Positives = 56/159 (35%), Gaps = 14/159 (8%)

Query: 56  KLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPE----PTRSDVVPAY 110
           KL       +++L +  +   +D + +   + A  +  +C+ +          S V    
Sbjct: 50  KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPL 109

Query: 111 VRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATV 167
           +   ++ +  V  A    +  IC+  +P       + +L  + E     +  +R     +
Sbjct: 110 LDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQL 169

Query: 168 I------MGMAPILGKDATIEQLLPIFLSLLKDEFPDVR 200
                          +    ++++PI + ++ D  P +R
Sbjct: 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIR 208

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 37/218 (16%), Positives = 80/218 (36%), Gaps = 9/218 (4%)

Query: 20  EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKS 79
           ++      +  +F++L+    D+   +A E    L   +   D   H    +    +DK 
Sbjct: 8   DSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKK 67

Query: 80  WRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 137
                M A         + P  EP    +VPA      + + E++  A+  +  I   +N
Sbjct: 68  TAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127

Query: 138 PELAIQHILPCV-KELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKD 194
           P  AI+ +LP +   +   +    + A+      M           + +L+P+    + D
Sbjct: 128 PV-AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD 186

Query: 195 EFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVE 229
              +V+    + + +  + +    I+    SL+  I +
Sbjct: 187 TKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD 224

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 25/125 (20%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             VRR  +T L +         +  E      E   ++   +R  A      +G   + +
Sbjct: 26  KWVRRDVSTALSR---------MGDEAFEPLLESLSNEDWRIRGAAAW---IIGNFQDER 73

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
                 +  ++   +D S  VR   A  L ++    G E     V  A  +L        
Sbjct: 74  -----AVEPLIKLLEDDSGFVRSGAARSLEQI----GGE----RVRAAMEKLAETGTGFA 120

Query: 122 RIAAA 126
           R  A 
Sbjct: 121 RKVAV 125

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 25/142 (17%)

Query: 103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 162
            S  +      + D    VR   +  ++++      + A + +L  +     +    +R 
Sbjct: 10  HSSGLVPRGSHMADENKWVRRDVSTALSRM-----GDEAFEPLLESLS----NEDWRIRG 60

Query: 163 ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 222
           A A  I+G       +  +E L+     LL+D+   VR      L+Q    IG     + 
Sbjct: 61  A-AAWIIGN---FQDERAVEPLIK----LLEDDSGFVRSGAARSLEQ----IG----GER 104

Query: 223 LLPAIVELAEDRHWRVRLAIIE 244
           +  A+ +LAE      R   + 
Sbjct: 105 VRAAMEKLAETGTGFARKVAVN 126

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 25/133 (18%)

Query: 76  QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 135
            D++  VR  V+  L  +           +     +  L + +  +R AAA     I   
Sbjct: 22  ADENKWVRRDVSTALSRM---------GDEAFEPLLESLSNEDWRIRGAAA----WIIGN 68

Query: 136 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 195
              E A++ ++  ++    D S  VRS  A  +      +G +     +      L +  
Sbjct: 69  FQDERAVEPLIKLLE----DDSGFVRSGAARSLEQ----IGGERVRAAMEK----LAETG 116

Query: 196 FPDVRLNIISKLD 208
               R   ++ L+
Sbjct: 117 TGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 25/132 (18%)

Query: 34  ELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 93
               D+   VR        AL ++ +           ++    ++ WR+R   A  +   
Sbjct: 19  SHMADENKWVRRDVST---ALSRMGDE------AFEPLLESLSNEDWRIRGAAAWIIGNF 69

Query: 94  CEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 153
            +           V   ++LL D+   VR  AA  + +I          + +   +++L+
Sbjct: 70  QDE--------RAVEPLIKLLEDDSGFVRSGAARSLEQI--------GGERVRAAMEKLA 113

Query: 154 SDSSQHVRSALA 165
              +   R    
Sbjct: 114 ETGTGFARKVAV 125

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 57/382 (14%), Positives = 122/382 (31%), Gaps = 26/382 (6%)

Query: 4   VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE---- 59
              SA+  +   A      +   E++         + +S   +      A+G + +    
Sbjct: 105 RPSSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGYICQDIDP 163

Query: 60  --PQDCVAHILPVIVNF--SQDKSWRVRYMVANQLYELCEAVGPEPT----RSDVVPAYV 111
              QD    IL  I+     ++ S  V+    N L    E           R  ++    
Sbjct: 164 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223

Query: 112 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGM 171
              +  +  VR+AA   + KI   L  +    ++ P +  ++ ++ +     +A   +  
Sbjct: 224 EATQCPDTRVRVAALQNLVKIMS-LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282

Query: 172 APILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 231
              +  D  ++  +    +  +   P+      +K      V  +       L    E  
Sbjct: 283 WSNVC-DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT----QTLTKQDEND 337

Query: 232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 291
           +D  W    A    + LLA+          +     + +K+  +  RDAA      + E 
Sbjct: 338 DDDDWNPCKAAGVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396

Query: 292 FGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 348
             P      +   +P ++E++ +P  + R T    +  +  ++         L  ++   
Sbjct: 397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456

Query: 349 K---DRVPNIKFNVAKVLQSLI 367
                  P +  NV     SL 
Sbjct: 457 IEGLSAEPRVASNVCWAFSSLA 478

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 36/269 (13%), Positives = 92/269 (34%), Gaps = 31/269 (11%)

Query: 132 ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLS 190
           +  + + E+  + +   V++L   S+ ++R       +    ++ K    +E  LP   +
Sbjct: 131 LGCMGSSEMC-RDLAGEVEKLLKTSNSYLRK---KAALCAVHVIRKVPELMEMFLPATKN 186

Query: 191 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
           LL ++   V    +                  LL  + E + D     R  + + + +L 
Sbjct: 187 LLNEKNHGVLHTSV-----------------VLLTEMCERSPDMLAHFRKLVPQLVRILK 229

Query: 251 SQLGVGFFDDKL-GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI 309
           + +  G+  +     +   +L+ ++  +      N    +E      AM  I+ QV    
Sbjct: 230 NLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE------AMNDILAQVATNT 283

Query: 310 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 369
                +    + + +  +  +          + ++     +   NI++     L   +  
Sbjct: 284 ETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT 343

Query: 370 VDQSVVEKSIRPCLVELSEDPDVDVRFFA 398
              +V        +V+  +D DV ++  A
Sbjct: 344 DHNAVQRHRST--IVDCLKDLDVSIKRRA 370

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 65/450 (14%), Positives = 136/450 (30%), Gaps = 70/450 (15%)

Query: 2   PMVRRSAAT---NLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL- 57
             V   A T   NL       + A   +  +     L          +       L  L 
Sbjct: 112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT---TDCLQILA 168

Query: 58  LEPQDCVAHI-----LPVIVNFSQDKSWR-VRYMVANQLYELCEAVGPEPT--RSDVVPA 109
              Q+    I        +VN  +  ++  + +  +  L  L      +P    +  + A
Sbjct: 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 228

Query: 110 YVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIM 169
               L D    +       +  +      +  ++ +L  + +L      +V +  A ++ 
Sbjct: 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288

Query: 170 GMA-------PILGKDATIEQLLPIFLSLLKDEFPDVR------LNIISKLDQVNQVIGI 216
            +         ++ +   IE L+     L   +  D+       L  ++   Q  ++   
Sbjct: 289 NLTCNNYKNKMMVCQVGGIEALVR--TVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 346

Query: 217 DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLAS---------QLGVGFFDDKLGALC 266
            +     LP +V+L     HW +  A +  I  LA          + G       +  L 
Sbjct: 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA------IPRLV 400

Query: 267 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISL 326
            Q L       +   +    +     G        + +++E               A+ +
Sbjct: 401 -QLLVRAHQDTQRRTSMGGTQQQFVEGVR------MEEIVE-----------GCTGALHI 442

Query: 327 LAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPC 382
           LA  + +   I     +P+ +      + NI+   A VL  L    +  +++  +     
Sbjct: 443 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 502

Query: 383 LVELSEDPDVDVRFFATQALQ--SKDQVMM 410
           L EL    +  V  +A   L   S+D+   
Sbjct: 503 LTELLHSRNEGVATYAAAVLFRMSEDKPQD 532

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 40/309 (12%), Positives = 92/309 (29%), Gaps = 48/309 (15%)

Query: 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI-LNPELAIQH---ILPCVKELSSDSSQHVR 161
            +P   +LL D +  V   AA  V ++ +   +    ++    +   V+ + + +     
Sbjct: 15  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 162 SALATVIMGMAPIL-GKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 219
              A  +  ++    G  A  +   +P  + +L      V    I+              
Sbjct: 75  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT-------------- 120

Query: 220 SQSLLPAIVELAEDRHWRVRLAIIEY--IPLLASQLGVGFFDDKLGAL-CMQWLKDKVYS 276
                  +  L   +    ++A+     +  + + L             C+Q L      
Sbjct: 121 ------TLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL------ 167

Query: 277 IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY-RMTILQAISLLA--PVMGS 333
              A  N   +L                ++ ++    Y     T  + + +L+       
Sbjct: 168 ---AYGNQESKLII------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218

Query: 334 EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD 393
            I  +  +  +     D    +  N    L++L     +    + +   LV+L    D++
Sbjct: 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 278

Query: 394 VRFFATQAL 402
           V   A   L
Sbjct: 279 VVTCAAGIL 287

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 55/407 (13%), Positives = 129/407 (31%), Gaps = 63/407 (15%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEG----------- 50
            + R +A   + K + T +   +K++    +  +  + +  V+   ++            
Sbjct: 51  QVARVAAGLQI-KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSA 109

Query: 51  ---CGALGKLLEPQDCVAHILPVIVNF--SQDKSWRVRYMVANQLYELCEAVGPEPTRS- 104
                 +     P +    ++P +V    + + +  ++      +  +C+ + PE  +  
Sbjct: 110 SQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK 169

Query: 105 --DVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILNPELAIQH----ILPCVKELSSDS 156
             +++ A ++ +R  E    V++AA   +             +     I+  V E +   
Sbjct: 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229

Query: 157 SQHVRSAL---ATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV--- 210
              VR A       IM +     +      L  I +  +K +  +V L  I     V   
Sbjct: 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289

Query: 211 ------------NQVIGIDLLSQSLLPAIV---------------ELAEDRHWRVRLAII 243
                        Q    +  S+      +               E  +D  W    A  
Sbjct: 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG 349

Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQH 300
             + LLA+          +     + +K+  +  RDAA      + E   P      +  
Sbjct: 350 VCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408

Query: 301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 347
            +P ++E++ +P  + R T    +  +  ++         L  ++  
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 51/329 (15%), Positives = 102/329 (31%), Gaps = 37/329 (11%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS-----VRLLAVEGCGALGK 56
             ++ S    +G     ++   L+ +   I   + Q  +       V+L A        +
Sbjct: 144 EHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203

Query: 57  LLEPQDCVAH----ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAY 110
             +           I+ V+   +Q    RVR      L ++        E      + A 
Sbjct: 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263

Query: 111 -VRLLRDNEAEVRIAAAGKVTKICR------ILNPELAIQHILPCVKELSSDSSQHVRSA 163
            +  ++ +  EV +      + +C       I   E A Q   P        S  + + A
Sbjct: 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT-----SKFYAKGA 318

Query: 164 LATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 223
           L  ++  +   L K    +           D+  +        L  +      D++   +
Sbjct: 319 LQYLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLMLLATCCEDDIV-PHV 367

Query: 224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLKDKVYSIRDA 280
           LP I E  ++  WR R A +     +            +       ++ +KD    +RD 
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427

Query: 281 AANNVKRLAEEFGPDWAMQHIVPQVLEMI 309
           AA  V R+ E           +  +L+ +
Sbjct: 428 AAWTVGRICELLPEAAINDVYLAPLLQCL 456

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507

 Score = 44.9 bits (105), Expect = 4e-05
 Identities = 33/270 (12%), Positives = 86/270 (31%), Gaps = 29/270 (10%)

Query: 103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 162
               + A + L  D +  +R  A  ++ +       E   +      + L +D S     
Sbjct: 63  ADSAINAQLDLCEDEDVSIRRQAIKELPQFAT---GENLPRVADILTQLLQTDDSAE--- 116

Query: 163 ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 222
               V   +  I   DA  +  L    S +      VR   I  L    + +  ++L++ 
Sbjct: 117 -FNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKE 173

Query: 223 LLPAIVELAED-------RHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLKD 272
           +   I+  ++          + + + I+  +  L +  G     +   +   L   +   
Sbjct: 174 VEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPS 233

Query: 273 KVYSIRDAAANNVKRLAEEFGPDWA--------MQHIVPQVLEMINNPHYL-YRMTILQA 323
               + D      ++    F  +           + ++P +  +      L  ++ +L+ 
Sbjct: 234 DPDCV-DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKL 292

Query: 324 ISLLAPVMGSEITCSQLLPVVINASKDRVP 353
           ++ ++   G        L  + +   + +P
Sbjct: 293 LAEMSSFCGDMEKLETNLRKLFDKLLEYMP 322

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 38  DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 97
           + +D++R    +    L  ++ P      + P++++  + K+ R R      +       
Sbjct: 143 EAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198

Query: 98  GPEPTR-SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 136
           G  P +   V       + D +  VR AA   +    +  
Sbjct: 199 GISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 23/224 (10%)

Query: 189 LSLLKDEFPDVRLNIISKL-DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 247
           L L+K  F       IS+L   +     + L+SQ            + ++  LA ++ + 
Sbjct: 21  LKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLF---------HKDFKQHLAALDSLV 71

Query: 248 LLASQLGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG------PDWAMQ 299
            LA           D L   C     +   +         K + E             + 
Sbjct: 72  RLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131

Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 359
             VP +L          R ++   +++L+ V+G      ++ P++++A K +    +   
Sbjct: 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSEC 187

Query: 360 AKVLQSLIPIVDQSVVE-KSIRPCLVELSEDPDVDVRFFATQAL 402
             V++  I     S ++  S+   +     D DV+VR  A   L
Sbjct: 188 LLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVL 231

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 63/433 (14%), Positives = 129/433 (29%), Gaps = 54/433 (12%)

Query: 2   PMVRRSAAT---NLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL- 57
             V   A T   NL       + A   +  +     L          +       L  L 
Sbjct: 248 DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT---TDCLQILA 304

Query: 58  LEPQDCVAHI-----LPVIVNFSQDKSWR-VRYMVANQLYELCEAVGPEPT--RSDVVPA 109
              Q+    I        +VN  +  ++  + +  +  L  L      +P    +  + A
Sbjct: 305 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 364

Query: 110 YVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIM 169
               L D    +       +  +      +  ++ +L  + +L      +V +  A ++ 
Sbjct: 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 424

Query: 170 GMA-------PILGKDATIEQLLPIFLSLLKDEFPDVR------LNIISKLDQVNQVIGI 216
            +         ++ +   IE L+     L   +  D+       L  ++   Q  ++   
Sbjct: 425 NLTCNNYKNKMMVCQVGGIEALVR--TVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482

Query: 217 DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDDKLGAL--CMQWLKDK 273
            +     LP +V+L     HW +  A +  I  LA          + GA+   +Q L   
Sbjct: 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 542

Query: 274 VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVM 331
               +   +    +    F     M+ IV      ++        R+ I           
Sbjct: 543 HQDTQRRTSMGGTQQQ--FVEGVRMEEIVEACTGALHILARDIHNRIVIRGL-------- 592

Query: 332 GSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSED 389
                    +P+ +      + NI+   A VL  L    +  +++  +     L EL   
Sbjct: 593 -------NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 645

Query: 390 PDVDVRFFATQAL 402
            +  V  +A   L
Sbjct: 646 RNEGVATYAAAVL 658

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 40/361 (11%), Positives = 105/361 (29%), Gaps = 50/361 (13%)

Query: 57  LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV----VPAYVR 112
             E  D    I     + +   + +     +  L      +      +++    +P   +
Sbjct: 98  FPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTK 157

Query: 113 LLRDNEAEVRIAAAGKVTKICRI-LNPELAIQH---ILPCVKELSSDSSQHVRSALATVI 168
           LL D +  V   AA  V ++ +   +    ++    +   V+ + + +        +  +
Sbjct: 158 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217

Query: 169 MGMAPIL-GKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 226
             ++    G  A  +   +P  +++L      V  + I+                     
Sbjct: 218 HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAIT--------------------T 257

Query: 227 IVELAEDRHWRVRLAIIEY--IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN 284
           +  L   +    ++A+     +  + + L                    +  +  A  N 
Sbjct: 258 LHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC------LQIL--AYGNQ 308

Query: 285 VKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY-RMTILQAISLLA--PVMGSEITCSQLL 341
             +L                ++ ++    Y     T  + + +L+        I  +  +
Sbjct: 309 ESKLII------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 362

Query: 342 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
             +     D    +  N    L++L     +    + +   LV+L    D++V   A   
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422

Query: 402 L 402
           L
Sbjct: 423 L 423

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 4   VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
           V+   A    +F           + + I +E  +      R  A EG          ++ 
Sbjct: 120 VQEVLAKAFDEFCK----KIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKEN 175

Query: 64  VAHILPVIVNFSQDKSWRVRYMVANQL 90
               +  I +  +D S  VR  V N L
Sbjct: 176 PNEAIRRIADLKEDVSEYVRKSVGNAL 202

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 22/214 (10%)

Query: 60  PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RSDVVPAYVRLLRD 116
           P D V  ILP +V         V       +  L +          +  VVP  V+LL  
Sbjct: 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285

Query: 117 NEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMA- 172
            E  +   A   +  I    +    ++     L     L ++   +++      +  +  
Sbjct: 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345

Query: 173 --PILGKDATIEQLLPIFLSLLKDEFPDVRL-------NIISKLDQVNQVIGIDLLSQSL 223
                 +      L+P  + +L       +        N  S       V    L+   +
Sbjct: 346 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY---LVHCGI 402

Query: 224 LPAIVELAEDRHWRVR---LAIIEYIPLLASQLG 254
           +  ++ L   +  ++    L  I  I   A +LG
Sbjct: 403 IEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 436

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 12/158 (7%)

Query: 106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVKELSSDSSQHV 160
           +     R L    A +R  AA  +    +          L +  +   ++ L  D+   V
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 161 RSALATVIMGMA---PILGKDATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVI 214
           R      I  +                  + +  ++ +   ++     ++  L   +   
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 215 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 252
              L S  ++  +V L    H      ++  +  L + 
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.97
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.97
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.97
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.97
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.96
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.96
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.96
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.94
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.94
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.94
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.92
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.9
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.9
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.9
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.89
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.88
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.87
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.87
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.86
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.86
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.86
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.85
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.85
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.83
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.83
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.82
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.82
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.77
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.77
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.75
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.75
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.74
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.74
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.74
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.73
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.73
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.7
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.69
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.69
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.67
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.66
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.66
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.66
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.65
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.65
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.64
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.64
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.63
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.62
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.61
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.61
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.61
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.6
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.58
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.57
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.57
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.56
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.55
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.55
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.55
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.51
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.51
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.5
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.49
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.47
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.47
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.46
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.44
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.38
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.36
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.36
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.34
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.34
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.33
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.3
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.28
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.28
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.27
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.26
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.24
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.23
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.2
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	99.18
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.17
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.15
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.14
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.13
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.13
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.13
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.05
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.05
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.86
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.75
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.61
3grl_A	651	General vesicular transport factor P115; vesicle t	98.55
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.38
3grl_A	651	General vesicular transport factor P115; vesicle t	98.37
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.36
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.31
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.2
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.08
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	97.96
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.59
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.36
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	97.22
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.95
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.75
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.08
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	95.8
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.66
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	95.46
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	94.94
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	94.86
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	93.99
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.92
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	93.52
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	93.34
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	93.1
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	92.93
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	92.71
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	92.66
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	92.41
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	92.27
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	92.2
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	91.63
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	90.52
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	90.29
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	89.98
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	87.23
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	87.2
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	86.82
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	86.51
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	86.43
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	85.93
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	84.38
1t06_A	235	Hypothetical protein; structural genomics, PSI, pr	81.76
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	80.79

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=2.2e-47  Score=365.56  Aligned_cols=407  Identities=57%  Similarity=0.936  Sum_probs=378.1

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCCh
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW   80 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~   80 (412)
                      +|.||..++++++.++...+.+.+.+.++|.+..+++|+++.+|..|+.+++.++...+++...+.++|.+.++.+|++|
T Consensus       177 ~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~  256 (588)
T 1b3u_A          177 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW  256 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSH
T ss_pred             CHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCH
Confidence            37899999999999999888777778899999999999999999999999999999988877778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HHHHhhhhhHHHhccCC
Q 015150           81 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDS  156 (412)
Q Consensus        81 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~  156 (412)
                      .+|..++++++.++...+.+....+++|.+.++++|+++.||..++.+++.+++..+++    .+.+.++|.+..+++|+
T Consensus       257 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~  336 (588)
T 1b3u_A          257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA  336 (588)
T ss_dssp             HHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC
Confidence            99999999999999988766666789999999999999999999999999999988765    56778999999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCc
Q 015150          157 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW  236 (412)
Q Consensus       157 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~  236 (412)
                      +|.||..++.+++.++..+|.+...+.++|.+..+++|++++||..++.+++.+....+.+...+.++|.+.++++|++|
T Consensus       337 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~  416 (588)
T 1b3u_A          337 NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW  416 (588)
T ss_dssp             CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999887778899999999999999999999999999999888776678899999999999999


Q ss_pred             hHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHH
Q 015150          237 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY  316 (412)
Q Consensus       237 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~  316 (412)
                      ++|..++.+++.++..+|.+.+.+.++|.+..+++|+++.||..|+.+++.+...+|.++..+.++|.+.....+++|.+
T Consensus       417 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~  496 (588)
T 1b3u_A          417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLH  496 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHH
T ss_pred             hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHH
Confidence            99999999999999999988777889999999999999999999999999999999998878889999999999999999


Q ss_pred             HHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHH
Q 015150          317 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF  396 (412)
Q Consensus       317 r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~  396 (412)
                      |.+++.+++.++..+|.+.+.+.++|.+.+.++|++++||..++++++.+...+|.+...+.+.|.+..+.+|+|++||.
T Consensus       497 R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~  576 (588)
T 1b3u_A          497 RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKY  576 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHH
Confidence            99999999999999998888999999999999999999999999999999999998877789999999999999999999


Q ss_pred             HHHHHHHHhHH
Q 015150          397 FATQALQSKDQ  407 (412)
Q Consensus       397 ~a~~al~~~~~  407 (412)
                      .|.+|++.+..
T Consensus       577 ~a~~al~~l~~  587 (588)
T 1b3u_A          577 FAQEALTVLSL  587 (588)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHhhc
Confidence            99999998753

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=1.1e-44  Score=346.77  Aligned_cols=408  Identities=22%  Similarity=0.295  Sum_probs=341.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR   81 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~   81 (412)
                      +.||..++++++.++...+++...+.++|++..+.+++++.+|..++.+++.++...++. ..+.++|.+.++++|+++.
T Consensus       101 ~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~  179 (588)
T 1b3u_A          101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPM  179 (588)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHH
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhCCCCHH
Confidence            568888888888888877766677778888888888888888888888888888777654 5677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHH
Q 015150           82 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVR  161 (412)
Q Consensus        82 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr  161 (412)
                      ||..++++++.++...+.+.....++|.+..+++|+++.||..|+.+++.+++..+++...+.++|.+..+++|++|.||
T Consensus       180 VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR  259 (588)
T 1b3u_A          180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVR  259 (588)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHH
Confidence            99999999999998877666667899999999999999999999999999999999888888899999999999999999


Q ss_pred             HHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh----hHHhhHHHHHHHHhcCCCch
Q 015150          162 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWR  237 (412)
Q Consensus       162 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~----~~~~~~~~~l~~~~~d~~~~  237 (412)
                      ..++.+++.++...|.+.....++|.+..+++|++++||..++.+++.++..++.+    ...+.++|.+..+++|++|.
T Consensus       260 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~  339 (588)
T 1b3u_A          260 YMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQH  339 (588)
T ss_dssp             HHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHH
T ss_pred             HHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHH
Confidence            99999999999888887777889999999999999999999999999999888765    45678899999999999999


Q ss_pred             HHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHH
Q 015150          238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR  317 (412)
Q Consensus       238 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r  317 (412)
                      +|.+++.+++.++..+|.+...+.+.|.+..+++|+++.||..++.+++.+...++.+...+.++|.+.+.+.|++|++|
T Consensus       340 vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr  419 (588)
T 1b3u_A          340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR  419 (588)
T ss_dssp             HHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHH
Confidence            99999999999999888877667788888888888888899999988888888877766666778888888888888888


Q ss_pred             HHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHH
Q 015150          318 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFF  397 (412)
Q Consensus       318 ~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~  397 (412)
                      .+++.+++.++..+|.+.+.+.++|.+..+++|+++.||..++.+++.+...+|++.+.+.++|.+..+.+|++..+|..
T Consensus       420 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~  499 (588)
T 1b3u_A          420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMT  499 (588)
T ss_dssp             HHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHH
Confidence            88888888887777776666677788888888887888888888888777777665555566666666666666666666


Q ss_pred             HHHHHHHhHHhhh
Q 015150          398 ATQALQSKDQVMM  410 (412)
Q Consensus       398 a~~al~~~~~~~~  410 (412)
                      +..+++.++..+|
T Consensus       500 a~~~l~~l~~~~~  512 (588)
T 1b3u_A          500 TLFCINVLSEVCG  512 (588)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC
Confidence            6666666655443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=3.7e-29  Score=248.64  Aligned_cols=404  Identities=17%  Similarity=0.184  Sum_probs=323.9

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhc-cC--chhhhhhhHHHHHhhccCC
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL-LE--PQDCVAHILPVIVNFSQDK   78 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~-~~--~~~~~~~l~~~l~~l~~d~   78 (412)
                      +.+|++|-+.|..+..   .+.+...+..++..+ .+.++.+|..|+..+.+.... +.  ++..+..+.+.+.+.+.|+
T Consensus        27 ~~~r~~Ae~~L~~~~~---~p~~~~~l~~il~~~-~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~  102 (852)
T 4fdd_A           27 TTIQRTVQQKLEQLNQ---YPDFNNYLIFVLTKL-KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDS  102 (852)
T ss_dssp             HHHHHHHHHHHHHHTT---SHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHHHHHHh---CCCHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCC
Confidence            4678888888876432   233444455554432 466788999999888877753 22  2345667888888888999


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH-------HHhhhhhHHH
Q 015150           79 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKE  151 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~  151 (412)
                      ++.+|..++.+++.++...+. ..+++++|.+.+.++++++.+|..++.+++.+++..++...       .+.++|.+.+
T Consensus       103 ~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~  181 (852)
T 4fdd_A          103 SPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ  181 (852)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHH
Confidence            999999999999999987633 45889999999999999999999999999999988776532       4568888899


Q ss_pred             hccCCcHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh--hHHhhHHHHH
Q 015150          152 LSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAI  227 (412)
Q Consensus       152 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l  227 (412)
                      +++|+++.||..+++++..+....+...  ....+++.+...+.|+++++|..++.+|..++...+..  ...+.+++.+
T Consensus       182 ~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l  261 (852)
T 4fdd_A          182 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYM  261 (852)
T ss_dssp             TTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            9999999999999999998876544322  12467888888899999999999999999998765421  2235678888


Q ss_pred             HHHhcCCCchHHHHHHHHhhHHHhhhCh----hhHHHHHHHHHHHHh-----------cC-----------chhHHHHHH
Q 015150          228 VELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCMQWL-----------KD-----------KVYSIRDAA  281 (412)
Q Consensus       228 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l-----------~d-----------~~~~vr~~a  281 (412)
                      ...+.|.++.+|..+++.+..+++....    ..+.+.++|.++..+           .|           .++.+|.+|
T Consensus       262 ~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a  341 (852)
T 4fdd_A          262 LQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCS  341 (852)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHH
T ss_pred             HHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHH
Confidence            8899999999999999998887753211    123456888888887           44           456799999


Q ss_pred             HHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHH
Q 015150          282 ANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNV  359 (412)
Q Consensus       282 ~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~  359 (412)
                      ..+++.+....|. .....++|.+.+.+.+++|.+|.+++.+++.+++.++..  .+.+.++|.+...++|+++.||.++
T Consensus       342 ~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a  420 (852)
T 4fdd_A          342 AAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT  420 (852)
T ss_dssp             HHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9999999998874 455678999999999999999999999999999877653  4678899999999999999999999


Q ss_pred             HHHHHHHhhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          360 AKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       360 ~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      +++++.++...++   ..+...++|.+...+.|++++||..++.+++.+++..+.
T Consensus       421 ~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence            9999999987654   245567888888888999999999999999999987664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=3.8e-30  Score=255.73  Aligned_cols=407  Identities=15%  Similarity=0.139  Sum_probs=330.9

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhh-------hhhhHHHHHhh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC-------VAHILPVIVNF   74 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~-------~~~l~~~l~~l   74 (412)
                      +.||..++.+++.+++..++ ..|+.+++.+...++++++.+|..++.+++.+++..++...       ...++|.+.++
T Consensus       104 ~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~  182 (852)
T 4fdd_A          104 PLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF  182 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHH
Confidence            67999999999999987643 45888999999999999999999999999999988765421       45688999999


Q ss_pred             ccCCChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHH
Q 015150           75 SQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK  150 (412)
Q Consensus        75 ~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~  150 (412)
                      ++|+++.||..++.+++.+....+..  .....+++.+...++|+++.||..++.+|..+++..+..  .+...+++.+.
T Consensus       183 l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~  262 (852)
T 4fdd_A          183 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYML  262 (852)
T ss_dssp             TTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            99999999999999998776532211  122468888999999999999999999999998865443  23445788888


Q ss_pred             HhccCCcHHHHHHHHHHHHhcCcccCh----hHHHHhhHHHHHHhh-----------cc-----------cChHHHHHHH
Q 015150          151 ELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLL-----------KD-----------EFPDVRLNII  204 (412)
Q Consensus       151 ~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l-----------~d-----------~~~~vr~~~~  204 (412)
                      +.++|.++.||..+++.+..+++....    ......++|.+...+           .|           .++.+|..+.
T Consensus       263 ~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~  342 (852)
T 4fdd_A          263 QRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSA  342 (852)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHH
T ss_pred             HHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHH
Confidence            889999999999999999988764211    123356778887776           33           3456899999


Q ss_pred             HHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHHHhcCchhHHHHHHH
Q 015150          205 SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAA  282 (412)
Q Consensus       205 ~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~  282 (412)
                      .+++.++...+. ...+.++|.+.+.+.+++|++|.+++.+++.+++..+..  .+.+.++|.+...++|+++.||.+|+
T Consensus       343 ~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~  421 (852)
T 4fdd_A          343 AALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITC  421 (852)
T ss_dssp             HHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999998875 445789999999999999999999999999998866542  24577999999999999999999999


Q ss_pred             HHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHH
Q 015150          283 NNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKF  357 (412)
Q Consensus       283 ~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~  357 (412)
                      .+++.+.+..+.   ..+...+++.+.+.+.|+++.+|..++.+++.+++.++..  .+.+.+++.+...+++.......
T Consensus       422 ~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~  501 (852)
T 4fdd_A          422 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLL  501 (852)
T ss_dssp             HHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHH
Confidence            999999987643   2345678899999999999999999999999999877764  57788999999999877777777


Q ss_pred             HHHHHHHHHhhhhchH----HHHhhHHHHHHh---hcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          358 NVAKVLQSLIPIVDQS----VVEKSIRPCLVE---LSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       358 ~~~~~l~~l~~~~~~~----~~~~~i~~~l~~---l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      .++.+++.++...|+.    .+.+.++|.+.+   .+.|.++++| .+.++++.++..+|.
T Consensus       502 ~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~  561 (852)
T 4fdd_A          502 ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQS  561 (852)
T ss_dssp             HHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhH
Confidence            8889999998776653    355677787763   5678888886 789999999998875

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.97  E-value=5.9e-28  Score=241.06  Aligned_cols=408  Identities=12%  Similarity=0.146  Sum_probs=329.1

Q ss_pred             chhHHHHHHHHHHHHHHhhhh--hhHH-HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc------------------
Q 015150            2 PMVRRSAATNLGKFAATVEAA--HLKS-EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------------------   60 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~------------------   60 (412)
                      +.+|..++++++.++...+..  .... .+++.+...+.|.++.+|..+++.+..++.....                  
T Consensus       238 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (861)
T 2bpt_A          238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF  317 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHH
Confidence            578999999999999876532  1233 6778888888999999999999999988875311                  


Q ss_pred             -hhhhhhhHHHHHhhccC-------CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHH
Q 015150           61 -QDCVAHILPVIVNFSQD-------KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI  132 (412)
Q Consensus        61 -~~~~~~l~~~l~~l~~d-------~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  132 (412)
                       ......++|.+...+.+       .+|.+|..+..+|+.++..++.. ....++|.+.+.++|++|.+|.+++.+++.+
T Consensus       318 ~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i  396 (861)
T 2bpt_A          318 ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSI  396 (861)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence             11235577777766653       45899999999999999988743 3467889999999999999999999999999


Q ss_pred             HHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh----hHHHHhhHHHHHHhhcccChHHHHHHHH
Q 015150          133 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIIS  205 (412)
Q Consensus       133 ~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~~~~  205 (412)
                      ++..+++   .+...++|.+...+.|+++.||.+++.+++.++..++.    ......++|.+.+.++|+ +.+|..++.
T Consensus       397 ~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~  475 (861)
T 2bpt_A          397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSW  475 (861)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence            9876633   34456888899999999999999999999999877654    334578889999999886 999999999


Q ss_pred             HHHHHHHhhch---h---hHHhhHHHHHHHHhcC--CCchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcC---
Q 015150          206 KLDQVNQVIGI---D---LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD---  272 (412)
Q Consensus       206 ~l~~i~~~~~~---~---~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---  272 (412)
                      ++..++...+.   +   .+.+.+++.+.+.+++  .++.+|..++.+++.++...+...  +...++|.+++.+.+   
T Consensus       476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~  555 (861)
T 2bpt_A          476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMS  555 (861)
T ss_dssp             HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHh
Confidence            99999887651   2   3346677888888874  458999999999999999887643  345677777776653   


Q ss_pred             ------------chhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCch-HHHHHHHHHHHHhccccchh--H
Q 015150          273 ------------KVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVMGSE--I  335 (412)
Q Consensus       273 ------------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~-~~r~~~~~~l~~l~~~~~~~--~  335 (412)
                                  ....+|..++.+++.++..+|.+  .+.+.+++.+...+.+.++ .+|..++.+++.++..+|.+  .
T Consensus       556 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~  635 (861)
T 2bpt_A          556 VDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK  635 (861)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH
T ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH
Confidence                        35668999999999999988764  2356788888888888777 89999999999999888765  4


Q ss_pred             HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCCC--ccHHHHHHHHHHHhHHhhhC
Q 015150          336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD--VDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~--~~vr~~a~~al~~~~~~~~~  411 (412)
                      +.+.++|.+.+.++++++.+|..++.+++.+....|..  .+...++|.+...+.+++  .++|..+..+++.++..+|+
T Consensus       636 ~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~  715 (861)
T 2bpt_A          636 YLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence            68889999999999999999999999999999888764  355778888888777664  89999999999999998775

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.97  E-value=4.5e-29  Score=257.22  Aligned_cols=408  Identities=13%  Similarity=0.158  Sum_probs=328.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--------hhhhhhHHHHHh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--------DCVAHILPVIVN   73 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--------~~~~~l~~~l~~   73 (412)
                      +.||+.|+.+++.++...+. ...+.+++.+...+.|+++.+|..|+.+++.++..++++        ...+.++|.+..
T Consensus        62 ~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~  140 (1230)
T 1u6g_C           62 GEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTS  140 (1230)
T ss_dssp             HHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHH
Confidence            67999999999999987665 456778888888888998999999999999999988765        257889999999


Q ss_pred             hcc-CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHH
Q 015150           74 FSQ-DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK  150 (412)
Q Consensus        74 l~~-d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~  150 (412)
                      .+. ++++.+|..++.+++.++...+...  +.+.+++.+...+.|+++.||..|+.+++.++...+++. ...+++.+.
T Consensus       141 ~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~  219 (1230)
T 1u6g_C          141 AIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLL  219 (1230)
T ss_dssp             HHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHH
T ss_pred             HHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence            988 4889999999999999998776543  346788889999999999999999999999998876553 345566666


Q ss_pred             Hhcc-CCcHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh--hHHhhHHH
Q 015150          151 ELSS-DSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLP  225 (412)
Q Consensus       151 ~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~  225 (412)
                      ..+. +.++.+|..++++++.++...|+..  +...++|.+...+.|+++++|..++.+++.++...+.+  .+.+.++|
T Consensus       220 ~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~  299 (1230)
T 1u6g_C          220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIIN  299 (1230)
T ss_dssp             HHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHH
T ss_pred             HHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHH
Confidence            6553 3345788889999999988776532  23688999999999999999999999999999887643  24455666


Q ss_pred             HHHHHhc-------------------------------------CCCchHHHHHHHHhhHHHhhhCh--hhHHHHHHHHH
Q 015150          226 AIVELAE-------------------------------------DRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALC  266 (412)
Q Consensus       226 ~l~~~~~-------------------------------------d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l  266 (412)
                      .+.+.+.                                     |..|++|.+++.++..++...+.  ..+.+.++|.+
T Consensus       300 ~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l  379 (1230)
T 1u6g_C          300 ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPAL  379 (1230)
T ss_dssp             HHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHH
T ss_pred             HHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            6654331                                     23589999999999999986654  33455678888


Q ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHhCh---------------------hhhhhhhHHHHHhhhcCCchHHHHHHHHHHH
Q 015150          267 MQWLKDKVYSIRDAAANNVKRLAEEFGP---------------------DWAMQHIVPQVLEMINNPHYLYRMTILQAIS  325 (412)
Q Consensus       267 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~  325 (412)
                      ...+.|++..||.+++.++..++...+.                     +.+.+.++|.+.+.+++++|.+|.+++.+++
T Consensus       380 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~  459 (1230)
T 1u6g_C          380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLT  459 (1230)
T ss_dssp             HSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            8889999999999999999999987653                     2234567777777799999999999999999


Q ss_pred             Hhccccchh--HHHHhhHHHHHhhcCCCCc--hHHHHHHHHHHHHhhhhchHH---HHhhHHHHHHhhcCCCCccHHHHH
Q 015150          326 LLAPVMGSE--ITCSQLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQSV---VEKSIRPCLVELSEDPDVDVRFFA  398 (412)
Q Consensus       326 ~l~~~~~~~--~~~~~il~~l~~~l~d~~~--~vR~~~~~~l~~l~~~~~~~~---~~~~i~~~l~~l~~d~~~~vr~~a  398 (412)
                      .++..++..  .+.+.++|.+...++|+.+  .+|..++..++.+....+++.   +.+.++|.+.....|++..||..+
T Consensus       460 ~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~a  539 (1230)
T 1u6g_C          460 ELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEA  539 (1230)
T ss_dssp             HHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHH
Confidence            998775532  4678999999999999876  899999999999987777653   567899999998999999999999


Q ss_pred             HHHHHHhHHhhhC
Q 015150          399 TQALQSKDQVMMS  411 (412)
Q Consensus       399 ~~al~~~~~~~~~  411 (412)
                      ..+++.+++.+|.
T Consensus       540 l~~l~~l~~~~~~  552 (1230)
T 1u6g_C          540 LLVTQQLVKVIRP  552 (1230)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.97  E-value=1.6e-27  Score=237.97  Aligned_cols=408  Identities=16%  Similarity=0.203  Sum_probs=331.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHhhccCC
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDK   78 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~d~   78 (412)
                      +.+|..+..+++.++..++ +...+.+++.+...++++++.+|..|+.+++.++...+++   ...+.+++.+...+.|+
T Consensus       345 ~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~  423 (861)
T 2bpt_A          345 WNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ  423 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS
T ss_pred             CcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999887 4556789999999999999999999999999999876533   23455888899999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---H---HHHHhhhhh
Q 015150           79 SWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPC  148 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~~~~~  148 (412)
                      ++.||..++.+++.++..++.    ..+...++|.+.+.++|+ +.||..++.++..+++.+++   +   .+...+++.
T Consensus       424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~  502 (861)
T 2bpt_A          424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDG  502 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence            999999999999999988754    335577899999999887 99999999999999987652   1   344567777


Q ss_pred             HHHhcc--CCcHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcc---------------cChHHHHHHHHHHHH
Q 015150          149 VKELSS--DSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQ  209 (412)
Q Consensus       149 l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vr~~~~~~l~~  209 (412)
                      +.+.+.  |.++.+|..++++++.++...+.+.  +...++|.+.+.+.+               ....+|..++.+++.
T Consensus       503 L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~  582 (861)
T 2bpt_A          503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA  582 (861)
T ss_dssp             HHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence            778776  5558999999999999988877643  234566666665542               246788899999999


Q ss_pred             HHHhhchh--hHHhhHHHHHHHHhcCCCc-hHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150          210 VNQVIGID--LLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANN  284 (412)
Q Consensus       210 i~~~~~~~--~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~  284 (412)
                      ++..+|.+  .+.+.+++.+...+++.++ .+|..++.+++.++...|...  +.+.++|.+...++++++.+|..++..
T Consensus       583 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~  662 (861)
T 2bpt_A          583 VIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGF  662 (861)
T ss_dssp             HHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            99888753  3356788888888888888 999999999999998887654  457799999999999999999999999


Q ss_pred             HHHHHHHhChhh--hhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCC------
Q 015150          285 VKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV------  352 (412)
Q Consensus       285 l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~------  352 (412)
                      ++.+.+.+|...  +...+++.+.+.+.+++  ..+|..++.+++.++..+|..  .|.+.++|.+...+..+.      
T Consensus       663 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d  742 (861)
T 2bpt_A          663 IADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLE  742 (861)
T ss_dssp             HHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHH
T ss_pred             HHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChH
Confidence            999999887642  34678888888888765  789999999999999888776  467889999988876422      


Q ss_pred             -----chHHHHHHHHHHHHhhhhch--H---HHHhhHHHHHHhhcCCC----CccHHHHHHHHHHHhHHhh-hC
Q 015150          353 -----PNIKFNVAKVLQSLIPIVDQ--S---VVEKSIRPCLVELSEDP----DVDVRFFATQALQSKDQVM-MS  411 (412)
Q Consensus       353 -----~~vR~~~~~~l~~l~~~~~~--~---~~~~~i~~~l~~l~~d~----~~~vr~~a~~al~~~~~~~-~~  411 (412)
                           ..+|..++++++.+...++.  .   .+...+++.+...+.|+    +..||..|..+++.++..+ |.
T Consensus       743 ~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~  816 (861)
T 2bpt_A          743 ALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG  816 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence                 46899999999999988772  2   24456777777777774    8899999999999999988 54

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.97  E-value=7.6e-28  Score=248.14  Aligned_cols=409  Identities=15%  Similarity=0.131  Sum_probs=329.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhh--------hhHHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCch--hhhhhhHHH
Q 015150            2 PMVRRSAATNLGKFAATVEAA--------HLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPV   70 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~--------~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~~   70 (412)
                      +.||..++.+++.++..++..        .+++.++|.+...+. ++++.+|..|+.++..++...+..  .+.+.+++.
T Consensus       100 ~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~  179 (1230)
T 1u6g_C          100 EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTC  179 (1230)
T ss_dssp             SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            578999999999999887754        368899999999888 478889999999999999766542  245678889


Q ss_pred             HHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-hHHHHHHHHHHHHHHHHhhCHH--HHHHhhhh
Q 015150           71 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE--LAIQHILP  147 (412)
Q Consensus        71 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~  147 (412)
                      +...+.|+++.||..++.+++.++...+... ...+++.+.+.+.+. ++.+|..++.+++.++...+..  .+...++|
T Consensus       180 l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~  258 (1230)
T 1u6g_C          180 LLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP  258 (1230)
T ss_dssp             HGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHH
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999999999998776554 456777777766443 3578999999999999887653  23456889


Q ss_pred             hHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhcc-------------------------------
Q 015150          148 CVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKD-------------------------------  194 (412)
Q Consensus       148 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d-------------------------------  194 (412)
                      .+.+.++|.++.+|..++.+++.++...+.+  .+...++|.+.+.+.+                               
T Consensus       259 ~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  338 (1230)
T 1u6g_C          259 LVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDE  338 (1230)
T ss_dssp             HHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccc
Confidence            9999999999999999999999988877654  2456677777665531                               


Q ss_pred             ------cChHHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh-----------
Q 015150          195 ------EFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-----------  255 (412)
Q Consensus       195 ------~~~~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-----------  255 (412)
                            ..+.+|..++.++..+....+.  ..+.+.++|.+...+.|.++.+|..++.++..+....+.           
T Consensus       339 ~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~  418 (1230)
T 1u6g_C          339 YSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAM  418 (1230)
T ss_dssp             ------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----------
T ss_pred             cccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccc
Confidence                  1246899999999999876553  345567788888888999999999999999988876642           


Q ss_pred             ----------hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHhhhcCCch--HHHHHHH
Q 015150          256 ----------GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHY--LYRMTIL  321 (412)
Q Consensus       256 ----------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~~--~~r~~~~  321 (412)
                                ..+.+.++|.+.+.++|+++.+|.+++..++.++...+.  ....+.++|.+.+.++|+++  .+|..++
T Consensus       419 ~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~  498 (1230)
T 1u6g_C          419 EQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL  498 (1230)
T ss_dssp             --CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHH
T ss_pred             ccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHH
Confidence                      223456778888889999999999999999999987543  12356789999999999875  8999999


Q ss_pred             HHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---------HHHHhhHHHHHHhhc--
Q 015150          322 QAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------SVVEKSIRPCLVELS--  387 (412)
Q Consensus       322 ~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---------~~~~~~i~~~l~~l~--  387 (412)
                      ..+..+....+.+   .+.+.++|.++..++|+++.||..++.+++.+...+++         ..+.+.++|.+...+  
T Consensus       499 ~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~  578 (1230)
T 1u6g_C          499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA  578 (1230)
T ss_dssp             HHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc
Confidence            9999998777765   37788999999999999999999999999999988776         256678899888876  


Q ss_pred             CCCCccHHHHHHHHHHHhHHhhhC
Q 015150          388 EDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       388 ~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      .|++.+||..+..+++.++...|+
T Consensus       579 ~d~~~~vr~~a~~~lg~L~~~~g~  602 (1230)
T 1u6g_C          579 ADIDQEVKERAISCMGQIICNLGD  602 (1230)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHTGG
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhCc
Confidence            788999999999999999998875

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.96  E-value=1.4e-26  Score=214.71  Aligned_cols=380  Identities=15%  Similarity=0.140  Sum_probs=293.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhcc--------------Cchhhhhhh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL--------------EPQDCVAHI   67 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~--------------~~~~~~~~l   67 (412)
                      +.+|++|.+.|..+...- ...++..++.++..  .+.++.+|..|+..+.+.....              -++..+..+
T Consensus        15 ~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~i   91 (462)
T 1ibr_B           15 RLELEAAQKFLERAAVEN-LPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREV   91 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHH
Confidence            578999999998866421 22344445554331  2236789999999999886431              122345557


Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHHHHHHHHhhCHH---HHH
Q 015150           68 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE---LAI  142 (412)
Q Consensus        68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~---~~~  142 (412)
                      ...++..+.++++.+ ..++.+++.++.....+..+++++|.+.+.+.++  ++.+|..++.+++.+++...++   .+.
T Consensus        92 k~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~  170 (462)
T 1ibr_B           92 KNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS  170 (462)
T ss_dssp             HHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH
T ss_pred             HHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH
Confidence            777777888888888 9999999999988665556899999999999988  8999999999999999866332   334


Q ss_pred             HhhhhhHHHhccCC--cHHHHHHHHHHHHhcCcccChhH----HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch
Q 015150          143 QHILPCVKELSSDS--SQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  216 (412)
Q Consensus       143 ~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~  216 (412)
                      +.+++.+...++|.  ++.||..++++++.+...++...    ..+.+++.+...+.++++.+|..++.++..+....+.
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~  250 (462)
T 1ibr_B          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  250 (462)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            55888888888887  79999999999998776543221    2345678888888889999999999999999877553


Q ss_pred             h--hHHh-hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-------------------C-hhh---HHHHHHHHHHHHh
Q 015150          217 D--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF---FDDKLGALCMQWL  270 (412)
Q Consensus       217 ~--~~~~-~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-------------------~-~~~---~~~~l~~~l~~~l  270 (412)
                      .  .... .+++.+...+++.++.+|..+++.+..++...                   . ...   +.+.++|.+++.+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l  330 (462)
T 1ibr_B          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (462)
T ss_dssp             GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence            2  2235 78888888889999999999999888887653                   0 011   2366888888877


Q ss_pred             cC-------chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhh
Q 015150          271 KD-------KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQL  340 (412)
Q Consensus       271 ~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~i  340 (412)
                      .+       .++.+|.+|..+++.+...+| +.....++|.+...+.+++|.+|.+++.+++.+++.++.+   .+...+
T Consensus       331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~  409 (462)
T 1ibr_B          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA  409 (462)
T ss_dssp             TCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTH
T ss_pred             HhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            43       457899999999999999998 4556778899999999999999999999999999876533   356789


Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhh
Q 015150          341 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVEL  386 (412)
Q Consensus       341 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l  386 (412)
                      +|.+...++|+++.||..++++++.++..+++.    .+.+.++|.|...
T Consensus       410 ~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~  459 (462)
T 1ibr_B          410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG  459 (462)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888763    2344555555543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.96  E-value=3.5e-26  Score=228.69  Aligned_cols=407  Identities=16%  Similarity=0.181  Sum_probs=320.2

Q ss_pred             chhHHHHHHHHHHHHH------------Hhh--hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhh
Q 015150            2 PMVRRSAATNLGKFAA------------TVE--AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI   67 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~------------~~~--~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l   67 (412)
                      +.+|..++..|.+...            .+.  .+.....+.+.+...+.++++.+ ..++.+++.++....+...++.+
T Consensus        51 ~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~l  129 (876)
T 1qgr_A           51 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPEL  129 (876)
T ss_dssp             HHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTH
T ss_pred             HHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHH
Confidence            5689999999888652            111  12234445555666777777777 88899999999875554567889


Q ss_pred             HHHHHhhccCC--ChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCC--hHHHHHHHHHHHHHHHHhhCHH-
Q 015150           68 LPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE-  139 (412)
Q Consensus        68 ~~~l~~l~~d~--~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~-  139 (412)
                      +|.+.+.+.++  ++.+|..++++++.++...+.+   .....+++.+.+.+.|+  ++.+|..+++++..+...++.. 
T Consensus       130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~  209 (876)
T 1qgr_A          130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  209 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998  9999999999999999875422   23356788888888887  6899999999999987654432 


Q ss_pred             ---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHH-hhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          140 ---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       140 ---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                         .+.+.+++.+...+.+.++.+|..+++++..++...++.  .... .+++.+...+.+.++.+|..++..+..+++.
T Consensus       210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~  289 (876)
T 1qgr_A          210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence               223457888888888999999999999999988765532  2234 7888888888898999999999888888754


Q ss_pred             hch--------------------hh---HHhhHHHHHHHHhc-------CCCchHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150          214 IGI--------------------DL---LSQSLLPAIVELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  263 (412)
Q Consensus       214 ~~~--------------------~~---~~~~~~~~l~~~~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  263 (412)
                      ...                    ..   ..+.++|.+.+.+.       |.+|.+|.++..+++.++...|. ...+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l  368 (876)
T 1qgr_A          290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL  368 (876)
T ss_dssp             HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred             HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHH
Confidence            210                    00   12456777776653       46799999999999999999885 4456789


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch----hHH
Q 015150          264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS----EIT  336 (412)
Q Consensus       264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~----~~~  336 (412)
                      |.+...+.|++|.+|.+|+.+++.+....+++   .+...++|.+...++|+++.+|.+++.+++.++..++.    ..+
T Consensus       369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T 1qgr_A          369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence            99999999999999999999999998766633   23467889999999999999999999999999987764    257


Q ss_pred             HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc----------------hHHHHhhHHHHHHhhcCCC---CccHHHH
Q 015150          337 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----------------QSVVEKSIRPCLVELSEDP---DVDVRFF  397 (412)
Q Consensus       337 ~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~----------------~~~~~~~i~~~l~~l~~d~---~~~vr~~  397 (412)
                      .+.+++.++..+.|+ +.||..++++++.+....+                -..+.+.++|.+...+.++   +.++|..
T Consensus       449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~  527 (876)
T 1qgr_A          449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence            788999999999986 8999999999999987765                1235578899998887765   4689999


Q ss_pred             HHHHHHHhHHhhhC
Q 015150          398 ATQALQSKDQVMMS  411 (412)
Q Consensus       398 a~~al~~~~~~~~~  411 (412)
                      +.++++.++..+|.
T Consensus       528 ~~~~l~~l~~~~~~  541 (876)
T 1qgr_A          528 AYESLMEIVKNSAK  541 (876)
T ss_dssp             HHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHCch
Confidence            99999999887764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.96  E-value=1.6e-25  Score=223.91  Aligned_cols=406  Identities=14%  Similarity=0.167  Sum_probs=305.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHhhccCC
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDK   78 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~d~   78 (412)
                      ..+|++++.+++.++...+. ...+.+++.+...+.|+++.+|..|+.+++.++...+++   .....++|.+...++|+
T Consensus       342 ~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~  420 (876)
T 1qgr_A          342 WNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP  420 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            46899999999999998874 556788899999999999999999999999999887643   24456889999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC----------------H
Q 015150           79 SWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------------P  138 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~  138 (412)
                      ++.||..++.+++.++...+.    ..+...+++.+...+.|+ +.||..++.++..+++..+                -
T Consensus       421 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l  499 (876)
T 1qgr_A          421 SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL  499 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSS
T ss_pred             CHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhh
Confidence            999999999999999987654    234567888898999886 8899999999999887653                1


Q ss_pred             HHHHHhhhhhHHHhccCC---cHHHH------------------------------------------------------
Q 015150          139 ELAIQHILPCVKELSSDS---SQHVR------------------------------------------------------  161 (412)
Q Consensus       139 ~~~~~~~~~~l~~~~~d~---~~~vr------------------------------------------------------  161 (412)
                      ..+...++|.+...+.+.   +..+|                                                      
T Consensus       500 ~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~  579 (876)
T 1qgr_A          500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND  579 (876)
T ss_dssp             TTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence            133455666666655432   23344                                                      


Q ss_pred             --HHHHHHHHhcCcccC-hhH--HHHhhHHHHHHhhcccC--hHHHHHHHHHHHHHHHhhchh--hHHhhHHHHHHHHhc
Q 015150          162 --SALATVIMGMAPILG-KDA--TIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAE  232 (412)
Q Consensus       162 --~~~~~~l~~l~~~~~-~~~--~~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~  232 (412)
                        ..++.+++.++..+| ...  +...++|.+...+++..  +.+|..++.+++.++...+..  .+.+.++|.+...+.
T Consensus       580 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~  659 (876)
T 1qgr_A          580 LQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLK  659 (876)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence              444455555554445 221  22456677777777654  478999999999988876643  334667888888888


Q ss_pred             CC-CchHHHHHHHHhhHHHhhhChhh--HHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhChhh--hhhhhHHHH
Q 015150          233 DR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQV  305 (412)
Q Consensus       233 d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l  305 (412)
                      +. ++.+|..++.+++.++...|...  +.+.+++.+...+++  .+..+|..++.+++.++..+|.++  +...++|.+
T Consensus       660 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l  739 (876)
T 1qgr_A          660 NYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTL  739 (876)
T ss_dssp             HCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence            87 89999999999999998887543  346788888888876  457899999999999999888763  345677777


Q ss_pred             HhhhcCCc-----------hHHHHHHHHHHHHhccccch------------hHHHHhhHHHHHhhcCCC--CchHHHHHH
Q 015150          306 LEMINNPH-----------YLYRMTILQAISLLAPVMGS------------EITCSQLLPVVINASKDR--VPNIKFNVA  360 (412)
Q Consensus       306 ~~~~~~~~-----------~~~r~~~~~~l~~l~~~~~~------------~~~~~~il~~l~~~l~d~--~~~vR~~~~  360 (412)
                      ...+.++.           ..+|..++.++..+...++.            ..+...+++.+.....|+  ...||..++
T Consensus       740 ~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~  819 (876)
T 1qgr_A          740 QQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAA  819 (876)
T ss_dssp             HHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHH
T ss_pred             HHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            77666442           27899999988877665542            135566777776666777  689999999


Q ss_pred             HHHHHHhhhhch-H--HH-HhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHHhh
Q 015150          361 KVLQSLIPIVDQ-S--VV-EKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       361 ~~l~~l~~~~~~-~--~~-~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      .+++.+...+|. .  .+ .+.+++.+.. .+.|++.++|..|..|++.+.+.-
T Consensus       820 ~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~  873 (876)
T 1qgr_A          820 GLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK  873 (876)
T ss_dssp             HHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence            999999998877 3  22 4456666666 788999999999999999998754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.94  E-value=1.3e-24  Score=200.76  Aligned_cols=379  Identities=13%  Similarity=0.080  Sum_probs=291.9

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhc-cCc---hhhhh-hhHHHHHhhccCC-ChHHHHHHHHHHHHHHHHhC---C
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKL-LEP---QDCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---P   99 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~-~~~---~~~~~-~l~~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~---~   99 (412)
                      ++.+.+.++++++.+|..|+..+..+... ..+   ..... .++|.+.++++++ ++.+|..++.+|+.++....   .
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            66777778888999999999999998652 222   12233 6899999988887 89999999999999885211   1


Q ss_pred             CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhccC-CcHHHHHHHHHHHHhcCccc
Q 015150          100 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPIL  175 (412)
Q Consensus       100 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~  175 (412)
                      .......+|.+.++++++++.+|..|+.+|+.++...+.   ......++|.+.+++.+ .++.+|..++++++.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            112256899999999999999999999999999874321   12334688999999884 78999999999999998543


Q ss_pred             C---hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHH
Q 015150          176 G---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  249 (412)
Q Consensus       176 ~---~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l  249 (412)
                      +   .......++|.+.++++++++.+|..++.++..++.....   ......++|.+..++.++++.+|..++.+++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            1   1222367899999999999999999999999998764321   122345789999999999999999999999988


Q ss_pred             HhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150          250 ASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQA  323 (412)
Q Consensus       250 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~  323 (412)
                      +...+..   .....++|.+..++.++++.+|..|+.+++.+......   ......++|.+.+.+.++++.+|..++.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            7643221   12234789999999999999999999999998752111   11235788999999999999999999999


Q ss_pred             HHHhccccchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH---------HHHhhH-----HHHHHh
Q 015150          324 ISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSI-----RPCLVE  385 (412)
Q Consensus       324 l~~l~~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---------~~~~~i-----~~~l~~  385 (412)
                      ++.++...+.+    .....++|.++.+++++++.+|..++.+|..+....+..         .+...+     ++.+..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  421 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF  421 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence            99998654333    234569999999999999999999999999997643321         122223     677888


Q ss_pred             hcCCCCccHHHHHHHHHHHhHH
Q 015150          386 LSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       386 l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +.++++.+|+..|..++..+..
T Consensus       422 l~~~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          422 LQSHENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHHHCC
Confidence            8899999999999999987753

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.94  E-value=2.9e-24  Score=202.22  Aligned_cols=380  Identities=10%  Similarity=0.067  Sum_probs=295.6

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhccCC-ChHHHHHHHHHHHHHHHHhC---
Q 015150           27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---   98 (412)
Q Consensus        27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~---   98 (412)
                      ..++.+...+.++++.+|..|+..+..++.....    ......++|.+.+++.++ ++.+|..++.+|+.++....   
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            3466666777888889999999999998765322    123356899999999987 89999999999999886211   


Q ss_pred             CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC---HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc
Q 015150           99 PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL  175 (412)
Q Consensus        99 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  175 (412)
                      ........+|.+.+++.++++.+|..|+.+|+.++...+   .......++|.+..++.+.++.+|..+++++..++...
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~  246 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  246 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence            111224578999999999999999999999999986421   22334568999999999999999999999999998543


Q ss_pred             ---ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHH
Q 015150          176 ---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  249 (412)
Q Consensus       176 ---~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l  249 (412)
                         ........++|.+..++.++++.+|..++.+|..++.....   ......++|.+..++.++++.+|..++.+++.+
T Consensus       247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l  326 (530)
T 1wa5_B          247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI  326 (530)
T ss_dssp             SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence               12234467899999999999999999999999999754221   122246789999999999999999999999988


Q ss_pred             HhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----hhhhhhHHHHHhhhcCCchHHHHHHHH
Q 015150          250 ASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQ  322 (412)
Q Consensus       250 ~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~~r~~~~~  322 (412)
                      +...+.   ......++|.+..+|.++++.+|..|+.+++.+.... .+    .+...++|.+..++.++++.+|..++.
T Consensus       327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  405 (530)
T 1wa5_B          327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW  405 (530)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            753221   1223458899999999999999999999999987521 22    123568899999999999999999999


Q ss_pred             HHHHhccccch--h----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--------------HHHhhHHHH
Q 015150          323 AISLLAPVMGS--E----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------VVEKSIRPC  382 (412)
Q Consensus       323 ~l~~l~~~~~~--~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------------~~~~~i~~~  382 (412)
                      +++.++...+.  +    .....++|.+..++.++++.+|..++.+|..+.......              ......++.
T Consensus       406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  485 (530)
T 1wa5_B          406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK  485 (530)
T ss_dssp             HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence            99999865433  2    234468999999999999999999999999997654321              112346788


Q ss_pred             HHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          383 LVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       383 l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      |..+..+++.+|+..|..++..+..
T Consensus       486 L~~L~~~~~~~v~~~a~~il~~~~~  510 (530)
T 1wa5_B          486 IFNCQQNENDKIYEKAYKIIETYFG  510 (530)
T ss_dssp             HHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            8899999999999999999987654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.94  E-value=3.8e-24  Score=198.33  Aligned_cols=346  Identities=15%  Similarity=0.188  Sum_probs=269.4

Q ss_pred             chhHHHHHHHHHHHHHHh------------h--hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhh
Q 015150            2 PMVRRSAATNLGKFAATV------------E--AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI   67 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~------------~--~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l   67 (412)
                      +.+|+.++..|.++.+..            .  .+...+.+...+...+.++++.+ ..++.+++.++....++..++.+
T Consensus        51 ~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~l  129 (462)
T 1ibr_B           51 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPEL  129 (462)
T ss_dssp             HHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTH
T ss_pred             hHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHH
Confidence            578999999999986421            1  12234456666666677777778 88899999999886554467889


Q ss_pred             HHHHHhhccCC--ChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCC--hHHHHHHHHHHHHHHHHhhCHH-
Q 015150           68 LPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE-  139 (412)
Q Consensus        68 ~~~l~~l~~d~--~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~-  139 (412)
                      +|.+.+.++++  ++.+|..++.+|+.+++....+   ...+.+++.+..+++|+  ++.||..|+.++..+...+... 
T Consensus       130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~  209 (462)
T 1ibr_B          130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  209 (462)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999888  9999999999999999876322   23356889999999998  7999999999999876554322 


Q ss_pred             ---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh--HHHH-hhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          140 ---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       140 ---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                         .+.+.+++.+.....+.++.+|..+++++..++...+..  .... .+++.+...++|.++++|..++..+..++..
T Consensus       210 ~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~  289 (462)
T 1ibr_B          210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (462)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence               233456788888889999999999999999988665432  2234 7888888888999999999999988888765


Q ss_pred             hc--------------------h---hhHHhhHHHHHHHHhc-------CCCchHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150          214 IG--------------------I---DLLSQSLLPAIVELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  263 (412)
Q Consensus       214 ~~--------------------~---~~~~~~~~~~l~~~~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  263 (412)
                      ..                    .   ....+.++|.+.+.+.       |.+|.+|.++..+++.++..+|. ...+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~  368 (462)
T 1ibr_B          290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL  368 (462)
T ss_dssp             HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHH
T ss_pred             HHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence            30                    0   0112567777777663       35799999999999999999984 5567799


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh----HH
Q 015150          264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----IT  336 (412)
Q Consensus       264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~  336 (412)
                      |.+...++|++|.+|.+|+.+++.+.+..+.+   .....++|.+...++|+++.+|.+++.+++.++..++..    .+
T Consensus       369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~  448 (462)
T 1ibr_B          369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (462)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTT
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence            99999999999999999999999999755432   234679999999999999999999999999999888763    46


Q ss_pred             HHhhHHHHHhhcC
Q 015150          337 CSQLLPVVINASK  349 (412)
Q Consensus       337 ~~~il~~l~~~l~  349 (412)
                      .+.++|.+++.++
T Consensus       449 l~~ll~~Ll~~L~  461 (462)
T 1ibr_B          449 LAPLLQCLIEGLS  461 (462)
T ss_dssp             HHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHhc
Confidence            6677777776653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.93  E-value=4e-23  Score=190.81  Aligned_cols=367  Identities=11%  Similarity=0.075  Sum_probs=280.4

Q ss_pred             chhHHHHHHHHHHHHHHh-hh---hhhHH-HHHHHHHHhccCC-chHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHH
Q 015150            2 PMVRRSAATNLGKFAATV-EA---AHLKS-EIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIV   72 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~-~~---~~~~~-~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~   72 (412)
                      +.+|..++..|..+.... .+   ..+.. .++|.+..+++++ ++.+|..|+.++..++...++   ......++|.+.
T Consensus        34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  113 (450)
T 2jdq_A           34 PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI  113 (450)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHH
Confidence            678999999999987521 11   12233 6888888888887 889999999999999875322   122356899999


Q ss_pred             hhccCCChHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH---HHHHHhh
Q 015150           73 NFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP---ELAIQHI  145 (412)
Q Consensus        73 ~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~  145 (412)
                      ++++++++.+|..++.+|+.++....   .......++|.+.+++.+ +++.+|..++.+++.++...++   ......+
T Consensus       114 ~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  193 (450)
T 2jdq_A          114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC  193 (450)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGG
T ss_pred             HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            99999999999999999999986321   111224578999999985 7899999999999999864311   1223668


Q ss_pred             hhhHHHhccCCcHHHHHHHHHHHHhcCcccChh---HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhH
Q 015150          146 LPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLL  219 (412)
Q Consensus       146 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~  219 (412)
                      +|.+.+++.+.++.+|..+++++..++......   .....++|.+..++.++++.+|..++.+++.++...+.   ...
T Consensus       194 l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  273 (450)
T 2jdq_A          194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVIL  273 (450)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHH
Confidence            899999999999999999999999998643221   12246889999999999999999999999999765321   112


Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW  296 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  296 (412)
                      ...++|.+.+++.++++.+|..++.+++.++.....   ......++|.++.++.++++.||..|+.+++.+.....++.
T Consensus       274 ~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~  353 (450)
T 2jdq_A          274 NCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ  353 (450)
T ss_dssp             TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             HCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHH
Confidence            236889999999999999999999999998753211   11224678899999999999999999999999987543332


Q ss_pred             ----hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---------HHHHhh-----HHHHHhhcCCCCchHHHH
Q 015150          297 ----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---------ITCSQL-----LPVVINASKDRVPNIKFN  358 (412)
Q Consensus       297 ----~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---------~~~~~i-----l~~l~~~l~d~~~~vR~~  358 (412)
                          ....++|.+..++.++++.+|..++.++..++...+..         .+...+     ++.+..+..++++.||..
T Consensus       354 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~  433 (450)
T 2jdq_A          354 IKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQK  433 (450)
T ss_dssp             HHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence                23468899999999999999999999999997643321         223333     566777778888889988


Q ss_pred             HHHHHHHHhh
Q 015150          359 VAKVLQSLIP  368 (412)
Q Consensus       359 ~~~~l~~l~~  368 (412)
                      +..++..+..
T Consensus       434 a~~~l~~~~~  443 (450)
T 2jdq_A          434 AFDLIEHYFG  443 (450)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHCC
Confidence            8888887763

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.92  E-value=1.9e-22  Score=189.83  Aligned_cols=378  Identities=12%  Similarity=0.089  Sum_probs=292.8

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhccC-c---hhhhhhhHHHHHhhccCCC-hHHHHHHHHHHHHHHHHhCC---C
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLE-P---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP---E  100 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~-~---~~~~~~l~~~l~~l~~d~~-~~vR~~~~~~l~~l~~~~~~---~  100 (412)
                      +|.+..++.++++.+|..|+..+..++.... +   ......++|.+.+++.+++ +.+|..++.+|+.++.....   .
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            5666777788889999999999999976543 1   2234568999999998876 99999999999999862110   1


Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCccc-
Q 015150          101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPIL-  175 (412)
Q Consensus       101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~-  175 (412)
                      ......+|.+..++.++++.+|..|+.+|+.++...+.   .......+|.+..++ .+.++.++..+++++..++... 
T Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~  235 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP  235 (528)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred             HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            12235899999999999999999999999999864222   123345788888888 6789999999999999998653 


Q ss_pred             -ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150          176 -GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  251 (412)
Q Consensus       176 -~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  251 (412)
                       ........++|.+..++.+++++++..++.+|..++.....   ......++|.+..++.++++.+|..++.+++.++.
T Consensus       236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence             22233467899999999999999999999999998754321   11234578999999999999999999999998876


Q ss_pred             hhCh---hhHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHhChh----hhhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150          252 QLGV---GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQA  323 (412)
Q Consensus       252 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~~r~~~~~~  323 (412)
                      ....   ......++|.+..++.++ ++.+|..|+.+++.+... ..+    .....++|.+..++.+.++.+|..++.+
T Consensus       316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a  394 (528)
T 4b8j_A          316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA  394 (528)
T ss_dssp             SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            3321   112234688999999998 999999999999999852 221    1234688999999998899999999999


Q ss_pred             HHHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--------------HHHhhHHHHHHh
Q 015150          324 ISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------VVEKSIRPCLVE  385 (412)
Q Consensus       324 l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------------~~~~~i~~~l~~  385 (412)
                      ++.++...+.+.    ....+++.+..++.++++.++..++.+|..+....+..              ......++.+..
T Consensus       395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  474 (528)
T 4b8j_A          395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN  474 (528)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence            999986533331    23468999999999999999999999999997644321              112345677888


Q ss_pred             hcCCCCccHHHHHHHHHHHhHH
Q 015150          386 LSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       386 l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +.++++.+|+..|...+..+..
T Consensus       475 L~~~~~~~v~~~a~~il~~~~~  496 (528)
T 4b8j_A          475 LQSHDNNEIYEKAVKILEAYWM  496 (528)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHCC
T ss_pred             HHcCCCHHHHHHHHHHHHHHCC
Confidence            8999999999999999987654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=2.2e-22  Score=189.44  Aligned_cols=345  Identities=13%  Similarity=0.088  Sum_probs=271.2

Q ss_pred             hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCC-hHHHHHHHHHHHHHHHHhhCH-
Q 015150           65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNP-  138 (412)
Q Consensus        65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~-  138 (412)
                      ...++.+.+.++++++.+|..++..|..+........    ....++|.+.+++.++ ++.+|..|+.+|..++...+. 
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            3457777888888899999999999998865332221    2246899999999997 899999999999999874321 


Q ss_pred             --HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          139 --ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       139 --~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                        .......+|.+..++.++++.+|..++++++.++....   ........+|.+..++.+.++.+|..++.+|..++..
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~  245 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  245 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence              22335688999999999999999999999999985421   1122346889999999999999999999999999865


Q ss_pred             hc---hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 015150          214 IG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKR  287 (412)
Q Consensus       214 ~~---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  287 (412)
                      .+   .......++|.+..++.++++.+|..++.++..++.....   ......++|.+..++.++++.+|..|+.+++.
T Consensus       246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~  325 (530)
T 1wa5_B          246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  325 (530)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence            31   1233467899999999999999999999999998864321   11223578899999999999999999999999


Q ss_pred             HHHHhC---hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHH
Q 015150          288 LAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAK  361 (412)
Q Consensus       288 l~~~~~---~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~  361 (412)
                      +....+   ...+...++|.+..++.++++.+|..++.+++.++......   .+...++|.++.++.++++.+|..+++
T Consensus       326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  405 (530)
T 1wa5_B          326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW  405 (530)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            875321   11223468899999999999999999999999998643321   233578999999999999999999999


Q ss_pred             HHHHHhhhhch--H----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150          362 VLQSLIPIVDQ--S----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       362 ~l~~l~~~~~~--~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      +|+.++...++  +    .....++|.|..++.+++++||..+..++..+....
T Consensus       406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~  459 (530)
T 1wa5_B          406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  459 (530)
T ss_dssp             HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence            99999875433  2    234568999999999999999999999999987643

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.92  E-value=1.5e-21  Score=185.23  Aligned_cols=388  Identities=14%  Similarity=0.160  Sum_probs=259.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHH
Q 015150            3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV   82 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~v   82 (412)
                      .+|+.+...+..+++..+  .....+.+.+.+-++|+++.+|..|+.+++.+.    .......+.|.+.+++.|+++.|
T Consensus        64 ~~Krl~yl~l~~~~~~~~--e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~V  137 (591)
T 2vgl_B           64 ELKKLVYLYLMNYAKSQP--DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYV  137 (591)
T ss_dssp             HHHHHHHHHHHHHHHHSH--HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHH
T ss_pred             HHHHHHHHHHHHHcccCc--hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHH
Confidence            455555555555554211  112223455555566666666666666655553    22245556666666666666666


Q ss_pred             HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC-------------------------
Q 015150           83 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-------------------------  137 (412)
Q Consensus        83 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-------------------------  137 (412)
                      |+.|+.++.++....+.......+++.+.++++|+++.|+..|+.+|..++..-+                         
T Consensus       138 Rk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~  217 (591)
T 2vgl_B          138 RKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEW  217 (591)
T ss_dssp             HHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCch
Confidence            6666666666666333222223566666666666666666666666666654321                         


Q ss_pred             ---------------HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc--ChhH---HHHhhHHHHHHhhcccCh
Q 015150          138 ---------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL--GKDA---TIEQLLPIFLSLLKDEFP  197 (412)
Q Consensus       138 ---------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~---~~~~l~~~l~~~l~d~~~  197 (412)
                                     ++.....+++.+..++++.++.|+..+++++..+...+  +.+.   ....+.+.+..++ ++++
T Consensus       218 ~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~  296 (591)
T 2vgl_B          218 GQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEP  296 (591)
T ss_dssp             HHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCc
Confidence                           01122446677777888999999999999999987644  2121   2235556666555 4688


Q ss_pred             HHHHHHHHHHHHHHHhhch--------------h--hH----------------HhhHHHHHHHHhcCCCchHHHHHHHH
Q 015150          198 DVRLNIISKLDQVNQVIGI--------------D--LL----------------SQSLLPAIVELAEDRHWRVRLAIIEY  245 (412)
Q Consensus       198 ~vr~~~~~~l~~i~~~~~~--------------~--~~----------------~~~~~~~l~~~~~d~~~~vr~~~~~~  245 (412)
                      ++|..++.++..+....+.              +  .+                .+.+++.+..++++.++.+|..++..
T Consensus       297 ~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~a  376 (591)
T 2vgl_B          297 EVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRA  376 (591)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            9999999998888653110              0  00                13456677778888899999999999


Q ss_pred             hhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC-CchHHHHHHHHHH
Q 015150          246 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAI  324 (412)
Q Consensus       246 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l  324 (412)
                      ++.++..++.  ..+.+++.+++++++....++..++..+..++...+..  .+.+++.+.+.+.+ ..+.+|.++++++
T Consensus       377 I~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wil  452 (591)
T 2vgl_B          377 IGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIV  452 (591)
T ss_dssp             HHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHH
T ss_pred             HHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999887643  24668889999999999999999999999888765432  35567777777764 5578899999999


Q ss_pred             HHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCC-CCccHHHHHHHHHH
Q 015150          325 SLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED-PDVDVRFFATQALQ  403 (412)
Q Consensus       325 ~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~  403 (412)
                      |+.+.....   ...++..+.+.+.+.++.||..++.++.+++...+.. ..+.+...+.....| .|.+||..|...+.
T Consensus       453 Gey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~evrdRA~~y~~  528 (591)
T 2vgl_B          453 GEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWR  528 (591)
T ss_dssp             HTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred             HcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence            999877653   2466777777777888999999999999998765432 123344455555566 67899999998776


Q ss_pred             Hh
Q 015150          404 SK  405 (412)
Q Consensus       404 ~~  405 (412)
                      -+
T Consensus       529 ll  530 (591)
T 2vgl_B          529 LL  530 (591)
T ss_dssp             TT
T ss_pred             HH
Confidence            55

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.90  E-value=4.1e-21  Score=182.26  Aligned_cols=367  Identities=14%  Similarity=0.106  Sum_probs=246.1

Q ss_pred             HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchH
Q 015150           28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV  107 (412)
Q Consensus        28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  107 (412)
                      +.+.+.+++++++..+|+.+...+..+++.. + +....+.+.+.+.++|+++.+|..++.+++.+.    .......+.
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~-e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~  123 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-P-DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLC  123 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-H-HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-c-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHH
Confidence            3444556789999999999988888887652 2 233456778888899999999999999998875    444567899


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh-------H-
Q 015150          108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD-------A-  179 (412)
Q Consensus       108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-------~-  179 (412)
                      |.+.+++.|+++.||+.|+.++..+.+..++......+++.+.++++|+++.|+..++.+++.++..-+..       . 
T Consensus       124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~  203 (591)
T 2vgl_B          124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQN  203 (591)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence            99999999999999999999999999865543333568899999999999999999999999987643211       0 


Q ss_pred             --------------------------------HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhh--chhhH---Hhh
Q 015150          180 --------------------------------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLL---SQS  222 (412)
Q Consensus       180 --------------------------------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~--~~~~~---~~~  222 (412)
                                                      ....+++.+..++++.++.|+..+++++..+....  +++.+   .+.
T Consensus       204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~  283 (591)
T 2vgl_B          204 INKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK  283 (591)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH
T ss_pred             HHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence                                            01235556666677888899999999988886543  12211   234


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh--------------------------------hHHHHHHHHHHHHh
Q 015150          223 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--------------------------------FFDDKLGALCMQWL  270 (412)
Q Consensus       223 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--------------------------------~~~~~l~~~l~~~l  270 (412)
                      +.+.+..+. ++++.+|..++.++..+....+..                                .-.+.+++.+..++
T Consensus       284 ~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l  362 (591)
T 2vgl_B          284 LAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYA  362 (591)
T ss_dssp             THHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHT
T ss_pred             HHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHH
Confidence            455555554 477888888888888777542110                                00123445555566


Q ss_pred             cCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcC-
Q 015150          271 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-  349 (412)
Q Consensus       271 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~-  349 (412)
                      .+.++++|..++.+++.++..++..  .+.+++.+.+++.+....++..++..+..+....+..  ...+++.+...+. 
T Consensus       363 ~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~  438 (591)
T 2vgl_B          363 TEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDS  438 (591)
T ss_dssp             TSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTT
T ss_pred             hcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHh
Confidence            6666667776766666666554322  2445566666666666566666666666655433321  2345555666554 


Q ss_pred             CCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          350 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       350 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      +..+.+|..+++++|+++....+.   ..++..+.....+.++.||..+..++.++...
T Consensus       439 ~~~~~~~~~~~wilGey~~~~~~~---~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~  494 (591)
T 2vgl_B          439 LDEPDARAAMIWIVGEYAERIDNA---DELLESFLEGFHDESTQVQLTLLTAIVKLFLK  494 (591)
T ss_dssp             CCSHHHHHHHHHHHHTTCTTCTTH---HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHcccccccCH---HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence            345667777777777776554321   24444444444556677777777777766543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.90  E-value=4.1e-21  Score=181.05  Aligned_cols=404  Identities=13%  Similarity=0.066  Sum_probs=283.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhh-hhH--HHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhc
Q 015150            2 PMVRRSAATNLGKFAATVEAA-HLK--SEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFS   75 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~-~~~--~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~   75 (412)
                      |.+|..++..+..++..-... ...  ...++.+.+++. ++++.+|..++..+..++..-..  .......+|.+.+++
T Consensus        31 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL  110 (529)
T 1jdh_A           31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML  110 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHH
Confidence            678999999999998643321 111  245666666664 45788999999999988754211  122335888999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH--------------
Q 015150           76 QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------------  138 (412)
Q Consensus        76 ~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------------  138 (412)
                      +++++.+|..++.+|.+++.......   .....+|.+.+++.++++.++..+..+|..++...++              
T Consensus       111 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L  190 (529)
T 1jdh_A          111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL  190 (529)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence            99999999999999999987533211   1346789999999999999999888888766531100              


Q ss_pred             -------------------------------HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150          139 -------------------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI  187 (412)
Q Consensus       139 -------------------------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  187 (412)
                                                     .......++.+..++.+.++.++..+++++..++...+........+|.
T Consensus       191 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~  270 (529)
T 1jdh_A          191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGT  270 (529)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHH
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHH
Confidence                                           0011235677777788888889999999888887654333333578899


Q ss_pred             HHHhhcccChHHHHHHHHHHHHHHHhhc---hhhHHhhHHHHHHHHhcC--CCchHHHHHHHHhhHHHhhhCh------h
Q 015150          188 FLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------G  256 (412)
Q Consensus       188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~---~~~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~------~  256 (412)
                      +.+++.++++++|..++.+|..+...-.   ........+|.+.+++.+  .++.++..++.+++.++...+.      .
T Consensus       271 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  350 (529)
T 1jdh_A          271 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA  350 (529)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            9999999999999999999999876421   111223467888887765  3489999999999988654322      1


Q ss_pred             hHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHhhhcCCchHHHHHHHHHH---------
Q 015150          257 FFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHYLYRMTILQAI---------  324 (412)
Q Consensus       257 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l---------  324 (412)
                      ......+|.+.+++.+++ +.+|..++.+++.+...-..  ......++|.+.+.+.++++.+|..+++++         
T Consensus       351 i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~  430 (529)
T 1jdh_A          351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV  430 (529)
T ss_dssp             HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTB
T ss_pred             HHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc
Confidence            122345788899999876 58999999999988752211  122346788888888877777776555444         


Q ss_pred             -------------HHhccccch--hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh--hchHHHHhhHHHHHHhhc
Q 015150          325 -------------SLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI--VDQSVVEKSIRPCLVELS  387 (412)
Q Consensus       325 -------------~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~--~~~~~~~~~i~~~l~~l~  387 (412)
                                   ..++.....  .......+|.+..++.|+++++|..++.+++.+...  ..........++.|..++
T Consensus       431 ~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~  510 (529)
T 1jdh_A          431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL  510 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGG
T ss_pred             cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHh
Confidence                         434322111  122345779999999999999999999999998743  111123456789999999


Q ss_pred             CCCCccHHHHHHHHHHHh
Q 015150          388 EDPDVDVRFFATQALQSK  405 (412)
Q Consensus       388 ~d~~~~vr~~a~~al~~~  405 (412)
                      .|++.+||..|..++..+
T Consensus       511 ~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          511 HSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             GCSSHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhc
Confidence            999999999999999876

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.90  E-value=6.7e-21  Score=179.32  Aligned_cols=368  Identities=11%  Similarity=0.095  Sum_probs=282.3

Q ss_pred             chhHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHhccCCc-hHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHh
Q 015150            2 PMVRRSAATNLGKFAATVE----AAHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVN   73 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~   73 (412)
                      |.+|..|+..+..++....    .......++|.+..++.+++ +.+|..|+.+|+.++...+.   .......+|.+..
T Consensus        88 ~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  167 (528)
T 4b8j_A           88 NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK  167 (528)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHH
Confidence            5788999999998876432    12244557888888888776 89999999999999975322   1223358899999


Q ss_pred             hccCCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhc-CCChHHHHHHHHHHHHHHHHhh--CHHHHHHhhhh
Q 015150           74 FSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRIL--NPELAIQHILP  147 (412)
Q Consensus        74 l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~  147 (412)
                      ++.++++.+|..++.+|+.++.....   .......+|.+..++ ++.++.++..++.+|..++...  ........++|
T Consensus       168 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~  247 (528)
T 4b8j_A          168 LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALP  247 (528)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence            99999999999999999999853111   111234688888988 7889999999999999998763  22344567899


Q ss_pred             hHHHhccCCcHHHHHHHHHHHHhcCcccChh---HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHh
Q 015150          148 CVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQ  221 (412)
Q Consensus       148 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~  221 (412)
                      .+..++.+.++.++..++.+++.++......   .....++|.+..++.++++.+|..++.+|+.++.....   ..+..
T Consensus       248 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  327 (528)
T 4b8j_A          248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDH  327 (528)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999999998643321   12246889999999999999999999999999764221   12234


Q ss_pred             hHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh
Q 015150          222 SLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA  297 (412)
Q Consensus       222 ~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  297 (412)
                      .++|.+..++.++ ++.+|..++.+++.++.....   ......++|.++.++.+.++.+|..|+.+|+.+....+++..
T Consensus       328 ~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  407 (528)
T 4b8j_A          328 QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQI  407 (528)
T ss_dssp             THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHH
Confidence            5789999999998 999999999999999863211   112235678999999999999999999999999876433321


Q ss_pred             ----hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---------HH-----HHhhHHHHHhhcCCCCchHHHHH
Q 015150          298 ----MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---------IT-----CSQLLPVVINASKDRVPNIKFNV  359 (412)
Q Consensus       298 ----~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---------~~-----~~~il~~l~~~l~d~~~~vR~~~  359 (412)
                          ...+++.+..++.++++.++..++.++..+.......         .+     ....+..+..+..++++.++..+
T Consensus       408 ~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a  487 (528)
T 4b8j_A          408 KYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA  487 (528)
T ss_dssp             HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence                2468899999999999999999999999997544221         11     12345667788889999999999


Q ss_pred             HHHHHHHhhh
Q 015150          360 AKVLQSLIPI  369 (412)
Q Consensus       360 ~~~l~~l~~~  369 (412)
                      ...+..++..
T Consensus       488 ~~il~~~~~~  497 (528)
T 4b8j_A          488 VKILEAYWMD  497 (528)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHCCC
Confidence            9999988754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.89  E-value=3.8e-20  Score=178.03  Aligned_cols=406  Identities=14%  Similarity=0.074  Sum_probs=288.9

Q ss_pred             chhHHHHHHHHHHHHHHhhhh-hh--HHHHHHHHHHhccC-CchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhc
Q 015150            2 PMVRRSAATNLGKFAATVEAA-HL--KSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFS   75 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~-~~--~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~   75 (412)
                      |.+|..++.+|+.++...... ..  ....++.+.+.+.+ +++.+|..|+..|..++..-..  .......++.+.+++
T Consensus        28 ~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL  107 (644)
T 2z6h_A           28 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML  107 (644)
T ss_dssp             HHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHH
Confidence            678999999999998754321 11  12456666666654 4788999999999887754211  122335888999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH--------------
Q 015150           76 QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------------  138 (412)
Q Consensus        76 ~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------------  138 (412)
                      +++++.+|..++.+|.+++.......   .....+|.+.+++.++++.++..++.+|..++...++              
T Consensus       108 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~L  187 (644)
T 2z6h_A          108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL  187 (644)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHH
Confidence            99999999999999999987542211   1356789999999998888998888888777641100              


Q ss_pred             -------------------------------HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150          139 -------------------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI  187 (412)
Q Consensus       139 -------------------------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  187 (412)
                                                     .......++.+.+++.+.+..++..++.++..++...........++|.
T Consensus       188 v~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~  267 (644)
T 2z6h_A          188 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGT  267 (644)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHH
Confidence                                           0111235667777777788888888888888887654333333578899


Q ss_pred             HHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCC--CchHHHHHHHHhhHHHhhhChh------
Q 015150          188 FLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------  256 (412)
Q Consensus       188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~------  256 (412)
                      +..+++++++++|..++.+|..+...-..   .......++.+.+++.+.  .+.++..++.+++.++...+..      
T Consensus       268 Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~  347 (644)
T 2z6h_A          268 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA  347 (644)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            99999999999999999999988754211   112234678888887763  3799999999999887543321      


Q ss_pred             hHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHhhhcCCc--------------------
Q 015150          257 FFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPH--------------------  313 (412)
Q Consensus       257 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~--------------------  313 (412)
                      ......+|.+.++|.+++ +.+|..|+.+++.+...-..  ......++|.+.+++.+.+                    
T Consensus       348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~  427 (644)
T 2z6h_A          348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV  427 (644)
T ss_dssp             HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSS
T ss_pred             HHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccc
Confidence            122346888999998875 68999999999988742211  1223457777777766533                    


Q ss_pred             --hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc--hHHHHhhHHHHHHhhc
Q 015150          314 --YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELS  387 (412)
Q Consensus       314 --~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~i~~~l~~l~  387 (412)
                        ..++..++.++..++..-...  ......+|.+..++.++++++|..++.+|..+...-.  ........++.|..++
T Consensus       428 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll  507 (644)
T 2z6h_A          428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL  507 (644)
T ss_dssp             CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHH
Confidence              456667777777776433221  1244688999999999999999999999999875311  1122345678899999


Q ss_pred             CCCCccHHHHHHHHHHHhHH
Q 015150          388 EDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       388 ~d~~~~vr~~a~~al~~~~~  407 (412)
                      .+++++||..|..+++.+..
T Consensus       508 ~~~~~~vr~~A~~aL~~l~~  527 (644)
T 2z6h_A          508 HSRNEGVATYAAAVLFRMSE  527 (644)
T ss_dssp             TCSCHHHHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999998865

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=2.1e-20  Score=182.61  Aligned_cols=406  Identities=14%  Similarity=0.075  Sum_probs=287.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhh-hh--HHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhc
Q 015150            2 PMVRRSAATNLGKFAATVEAA-HL--KSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFS   75 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~-~~--~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~   75 (412)
                      +.||..++.+|+.++...... .+  .+.+++.+...+. ++++.+|..|+.+|..++..-..  .......++.+..++
T Consensus       164 ~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL  243 (780)
T 2z6g_A          164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML  243 (780)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHH
Confidence            678999999999988743221 11  1246666666665 44788999999999997754211  122345889999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh--------C-------
Q 015150           76 QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--------N-------  137 (412)
Q Consensus        76 ~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--------~-------  137 (412)
                      +++++.+|..++.+|.+++.......   .....+|.+.+++.++++.++..++.++..++...        .       
T Consensus       244 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~L  323 (780)
T 2z6g_A          244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL  323 (780)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence            99999999999999999987533211   12457889999999888889888887777655310        0       


Q ss_pred             ------------------------------HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150          138 ------------------------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI  187 (412)
Q Consensus       138 ------------------------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  187 (412)
                                                    .......++|.+..++.+.+..++..++.++..++...........++|.
T Consensus       324 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~  403 (780)
T 2z6g_A          324 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGT  403 (780)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHH
Confidence                                          00112235677778888888888888888888887554332233568899


Q ss_pred             HHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcC-CCc-hHHHHHHHHhhHHHhhhCh------h
Q 015150          188 FLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV------G  256 (412)
Q Consensus       188 l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d-~~~-~vr~~~~~~l~~l~~~~~~------~  256 (412)
                      +..+++++++++|..++.+|..+...-..   .......++.+.+++.+ .++ .+|..++.+++.++...+.      .
T Consensus       404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~  483 (780)
T 2z6g_A          404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA  483 (780)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence            99999999999999999999998754211   11123467888887766 344 8999999999988653322      1


Q ss_pred             hHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHhhhcCCc--------------------
Q 015150          257 FFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPH--------------------  313 (412)
Q Consensus       257 ~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~--------------------  313 (412)
                      ......+|.+..+|.+++. .+|..|+.+|+.+...-..  ......++|.+.+++.+.+                    
T Consensus       484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~  563 (780)
T 2z6g_A          484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV  563 (780)
T ss_dssp             HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred             HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence            1223457888999988764 8999999999998742111  1122456777777766543                    


Q ss_pred             --hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch--HHHHhhHHHHHHhhc
Q 015150          314 --YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELS  387 (412)
Q Consensus       314 --~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~i~~~l~~l~  387 (412)
                        ..++..++.+|+.++..-...  ......+|.+..++.+++++||..++.+|..+...-..  .......++.|..++
T Consensus       564 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll  643 (780)
T 2z6g_A          564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL  643 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGG
T ss_pred             ChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH
Confidence              346677788888776321111  12456889999999999999999999999998643111  122345788899999


Q ss_pred             CCCCccHHHHHHHHHHHhHH
Q 015150          388 EDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       388 ~d~~~~vr~~a~~al~~~~~  407 (412)
                      +|++.+||..|..+|..+..
T Consensus       644 ~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          644 HSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             GCSCHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999876

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.89  E-value=2.4e-20  Score=178.04  Aligned_cols=405  Identities=15%  Similarity=0.140  Sum_probs=301.3

Q ss_pred             chhHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccC-----c---hhhhhhhHHHHH
Q 015150            2 PMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE-----P---QDCVAHILPVIV   72 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~-----~---~~~~~~l~~~l~   72 (412)
                      +.++..|+.+++.++..-.. +.+.+.=.|.+..++.++++.+|..|+.+|..+.....     +   +.....+++.+.
T Consensus       304 ~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~  383 (810)
T 3now_A          304 ELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACR  383 (810)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHH
Confidence            46788899999987764221 22333223889999988888899999999999875322     1   112356788888


Q ss_pred             hhccCC--ChHHHHHHHHHHHHHHHHhCCC--Cc-ccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC----------
Q 015150           73 NFSQDK--SWRVRYMVANQLYELCEAVGPE--PT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------  137 (412)
Q Consensus        73 ~l~~d~--~~~vR~~~~~~l~~l~~~~~~~--~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------  137 (412)
                      +++.++  ++.+|+.++.+|..++......  .. ....+|.+.+++++++..+...+..+|+.++....          
T Consensus       384 ~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~  463 (810)
T 3now_A          384 RFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE  463 (810)
T ss_dssp             HHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGG
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHH
Confidence            888877  8999999999999987532211  11 13589999999999999999999999999987431          


Q ss_pred             -------------------------HHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhhHHHHHH
Q 015150          138 -------------------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLS  190 (412)
Q Consensus       138 -------------------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~  190 (412)
                                               ........+|.+..+++++++.+|..+++++++++..-..  .......+|.+..
T Consensus       464 la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~  543 (810)
T 3now_A          464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLR  543 (810)
T ss_dssp             GTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence                                     1122345789999999999999999999999999853211  1223567899999


Q ss_pred             hhcccChHHHHHHHHHHHHHHHhhchhhH-----HhhHHHHHHHHhcCCCc-hHHHHHHHHhhHHHhhhC---hhhHHHH
Q 015150          191 LLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLG---VGFFDDK  261 (412)
Q Consensus       191 ~l~d~~~~vr~~~~~~l~~i~~~~~~~~~-----~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~---~~~~~~~  261 (412)
                      ++.+.++.+|..++.+|..++....++..     ....+|.+..++..+.. ..+..++.++..++..-.   .......
T Consensus       544 LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG  623 (810)
T 3now_A          544 MALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ  623 (810)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence            99999999999999999999866443321     13468888998875533 445577788877775421   1122344


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh-hhhh--hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch--hH-
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-DWAM--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EI-  335 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~--~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~-  335 (412)
                      .+|.+..++.+++..||++|+.+++.+...-.. ..+.  ...++.|..++..++..+|..++.+++.++.....  .. 
T Consensus       624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~i  703 (810)
T 3now_A          624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI  703 (810)
T ss_dssp             HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            688899999999999999999999998752111 1112  35788999999999999999999999999863222  22 


Q ss_pred             HH-HhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhhcCCC---CccHHHHHHHHHHHhHH
Q 015150          336 TC-SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDP---DVDVRFFATQALQSKDQ  407 (412)
Q Consensus       336 ~~-~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~---~~~vr~~a~~al~~~~~  407 (412)
                      +. ...+|.+..++.+++..+|..+++++.++... +++    ......+|.|..+++++   +.+++..|.++|..+..
T Consensus       704 i~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          704 LAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            33 46899999999999999999999999999863 222    34467899999987655   68899999999998864

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.88  E-value=1.4e-20  Score=177.53  Aligned_cols=387  Identities=14%  Similarity=0.069  Sum_probs=265.9

Q ss_pred             hhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch-hh--hhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHH
Q 015150           20 EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DC--VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCE   95 (412)
Q Consensus        20 ~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~-~~--~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~   95 (412)
                      +...+....+|.+..+++++++.+|..|+..+..++..-... ..  ....++.+.+.+. ++++.+|..++.+|..++.
T Consensus        10 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~   89 (529)
T 1jdh_A           10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH   89 (529)
T ss_dssp             -------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             chhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            333445557888888899999999999999999998653221 11  1246676776664 4589999999999999764


Q ss_pred             HhC--CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHh
Q 015150           96 AVG--PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMG  170 (412)
Q Consensus        96 ~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~  170 (412)
                      ...  ........+|.+.++++++++.++..++.+|..++...+..   ......+|.+.+++.++++.++..++.++..
T Consensus        90 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~  169 (529)
T 1jdh_A           90 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  169 (529)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            311  00122357899999999999999999999999998764322   2245689999999999999999988777766


Q ss_pred             cCccc----------C-----------------------------------hhHHHHhhHHHHHHhhcccChHHHHHHHH
Q 015150          171 MAPIL----------G-----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIIS  205 (412)
Q Consensus       171 l~~~~----------~-----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~  205 (412)
                      ++..-          |                                   ........+|.+..++.+.++.++..++.
T Consensus       170 la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~  249 (529)
T 1jdh_A          170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW  249 (529)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence            54310          0                                   00001244666677777777788888888


Q ss_pred             HHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--h-hhHHHHHHHHHHHHhcC--chhHHHHH
Q 015150          206 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V-GFFDDKLGALCMQWLKD--KVYSIRDA  280 (412)
Q Consensus       206 ~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~-~~~~~~l~~~l~~~l~d--~~~~vr~~  280 (412)
                      .+..+............++|.+.+++.++++.+|..++..+..++....  . .......+|.+..++.+  .++.++..
T Consensus       250 ~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~  329 (529)
T 1jdh_A          250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP  329 (529)
T ss_dssp             HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHH
Confidence            8877776543322235678999999999999999999999988865321  1 11223357777888765  33789999


Q ss_pred             HHHHHHHHHHHhCh------hhhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCC
Q 015150          281 AANNVKRLAEEFGP------DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDR  351 (412)
Q Consensus       281 a~~~l~~l~~~~~~------~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~  351 (412)
                      |+.+|+.+....+.      .......+|.+.+++.+++ +.+|..++.+++.++..-...  .....++|.+...+.++
T Consensus       330 a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~  409 (529)
T 1jdh_A          330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA  409 (529)
T ss_dssp             HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHH
Confidence            99999988653222      1123357889999999876 699999999999998532221  23456889999999888


Q ss_pred             CchHHHHHHHHHHH----------------------Hhhhhch--HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          352 VPNIKFNVAKVLQS----------------------LIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       352 ~~~vR~~~~~~l~~----------------------l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      ++.+|..++++++.                      ++.....  .......+|.+..++.|++.+||..+..++..+.
T Consensus       410 ~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~  488 (529)
T 1jdh_A          410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             HHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            88888866665554                      3221110  1234567789999999999999999999998875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.87  E-value=7.2e-19  Score=167.96  Aligned_cols=407  Identities=12%  Similarity=0.074  Sum_probs=302.1

Q ss_pred             CchhHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---h-hhhhhHHHHH
Q 015150            1 MPMVRRSAATNLGKFAATVE----AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---D-CVAHILPVIV   72 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~-~~~~l~~~l~   72 (412)
                      |+.+|..+.-++.++-..+.    .+.+.+.+-.++...+...+..-...|+.++..++...++.   . .....++.+.
T Consensus       217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li  296 (810)
T 3now_A          217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL  296 (810)
T ss_dssp             CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence            57789999999999888665    24455556666666666666555666788888888765441   1 2445889999


Q ss_pred             hhccCCChHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH--------HHHHH
Q 015150           73 NFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------ELAIQ  143 (412)
Q Consensus        73 ~l~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~  143 (412)
                      .++.+++..++..++.+++..+..-.. +.....-+|.+..++++++..+|..|+.+|.+++...+.        +....
T Consensus       297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~  376 (810)
T 3now_A          297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAAL  376 (810)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHH
Confidence            999999999999999999987643111 111122249999999988899999999999998753321        11234


Q ss_pred             hhhhhHHHhccCC--cHHHHHHHHHHHHhcCcccChh--HHH-HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc---
Q 015150          144 HILPCVKELSSDS--SQHVRSALATVIMGMAPILGKD--ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---  215 (412)
Q Consensus       144 ~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~---  215 (412)
                      .+++.+.+++.++  ++.+|..+++++..+.......  ... ...+|.+..+++.+++.++..++..|+.+.....   
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~  456 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE  456 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence            5788888888776  8899999999999997543221  111 4688999999998899999999999999986431   


Q ss_pred             --------------------------------hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh--hhHHHH
Q 015150          216 --------------------------------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDK  261 (412)
Q Consensus       216 --------------------------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~  261 (412)
                                                      ...+....+|.+..+++++++.+|..+++++..++..-..  ......
T Consensus       457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G  536 (810)
T 3now_A          457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEG  536 (810)
T ss_dssp             CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence                                            0011235689999999999999999999999999853211  112344


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh-----hhhhHHHHHhhhcCC-chHHHHHHHHHHHHhccccch--
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGS--  333 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~--  333 (412)
                      .+|.++.++.+.+..+|+.|+.+|+.+.....++..     ....+|.|.+++.+. +...+..++.+|..++..-..  
T Consensus       537 aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~  616 (810)
T 3now_A          537 GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR  616 (810)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHH
Confidence            689999999999999999999999999876544321     134789999988755 344556789999999864321  


Q ss_pred             -hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch-HHHH--hhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          334 -EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-SVVE--KSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       334 -~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~-~~~~--~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                       .......+|.+..++.++++.||..+++++++++..-.. ..+.  ...+|.|..++..++.++|..|+.++..+..
T Consensus       617 ~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~  694 (810)
T 3now_A          617 QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS  694 (810)
T ss_dssp             HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence             123446789999999999999999999999999863221 1222  3578999999999999999999999999875

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.87  E-value=9.8e-20  Score=177.86  Aligned_cols=389  Identities=13%  Similarity=0.039  Sum_probs=275.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh-h--hhhhHHHHHhhcc-C
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-C--VAHILPVIVNFSQ-D   77 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-~--~~~l~~~l~~l~~-d   77 (412)
                      +.+|..+++.+.....    ..+....+|.+..++.++++.+|..|+.++..++....... .  ...+++.+.+.+. +
T Consensus       129 ~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~  204 (780)
T 2z6g_A          129 QMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT  204 (780)
T ss_dssp             CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC
Confidence            3567777777664322    23345677888888889999999999999999987532211 1  2346777776665 4


Q ss_pred             CChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HH-HHhhhhhHHHh
Q 015150           78 KSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LA-IQHILPCVKEL  152 (412)
Q Consensus        78 ~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~-~~~~~~~l~~~  152 (412)
                      .++.+|..++.+|..++.....  .......+|.+.++++++++.+|..|+.+|..++...+..  .+ ....+|.+.++
T Consensus       205 ~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~l  284 (780)
T 2z6g_A          205 NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  284 (780)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHH
Confidence            5899999999999997653111  1122457999999999999999999999999998764332  22 35688999999


Q ss_pred             ccCCcHHHHHHHHHHHHhcCccc--Ch-hHHHHhhHHHHHHhhcccChH-HHHHHHHHHHHHHHhhc--hhhHHhhHHHH
Q 015150          153 SSDSSQHVRSALATVIMGMAPIL--GK-DATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIG--IDLLSQSLLPA  226 (412)
Q Consensus       153 ~~d~~~~vr~~~~~~l~~l~~~~--~~-~~~~~~l~~~l~~~l~d~~~~-vr~~~~~~l~~i~~~~~--~~~~~~~~~~~  226 (412)
                      +.+.++.++..++.++..++...  +. .......++.+..++++.+++ .+..+..++..++..-.  ........+|.
T Consensus       285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~  364 (780)
T 2z6g_A          285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA  364 (780)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHH
Confidence            99999999999988888766321  11 112235678888888876654 44456666666653211  12223456889


Q ss_pred             HHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHH
Q 015150          227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVP  303 (412)
Q Consensus       227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~  303 (412)
                      +..++.+.+..++..++..+..++...........++|.+.+++.++++.+|..|+.+|+.+...-..   .......++
T Consensus       365 Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~  444 (780)
T 2z6g_A          365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE  444 (780)
T ss_dssp             HGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence            99999999999999999999998876544333456899999999999999999999999988653111   111245778


Q ss_pred             HHHhhhcCC-c-hHHHHHHHHHHHHhccccchh------HHHHhhHHHHHhhcCCCCc-hHHHHHHHHHHHHhhhhchH-
Q 015150          304 QVLEMINNP-H-YLYRMTILQAISLLAPVMGSE------ITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS-  373 (412)
Q Consensus       304 ~l~~~~~~~-~-~~~r~~~~~~l~~l~~~~~~~------~~~~~il~~l~~~l~d~~~-~vR~~~~~~l~~l~~~~~~~-  373 (412)
                      .+.+++.+. + ..+|..++.+++.++...+..      ......+|.+.+++.++.. .+|..++++|+.++..-... 
T Consensus       445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  524 (780)
T 2z6g_A          445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA  524 (780)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHH
Confidence            888888763 3 389999999999997644331      1234678999999988775 99999999999997532211 


Q ss_pred             -HHHhhHHHHHHhhcCCCCccH
Q 015150          374 -VVEKSIRPCLVELSEDPDVDV  394 (412)
Q Consensus       374 -~~~~~i~~~l~~l~~d~~~~v  394 (412)
                       .....++|.|..++.+.+.++
T Consensus       525 ~i~~~g~i~~Lv~lL~~~~~~~  546 (780)
T 2z6g_A          525 PLREQGAIPRLVQLLVRAHQDT  546 (780)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHhcchhH
Confidence             233467777777665544333

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.86  E-value=4.5e-19  Score=170.54  Aligned_cols=385  Identities=14%  Similarity=0.073  Sum_probs=271.9

Q ss_pred             hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh-h--hhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhC
Q 015150           23 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-C--VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVG   98 (412)
Q Consensus        23 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~-~--~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~   98 (412)
                      .+....+|.+..+++++++.+|..|+..+..++....... .  ....++.+.+.+.+ +++.+|..++.+|..++....
T Consensus        10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~   89 (644)
T 2z6h_A           10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE   89 (644)
T ss_dssp             --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred             hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence            3445567888888999999999999999999998754321 1  12467777776654 589999999999998764321


Q ss_pred             C--CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150           99 P--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP  173 (412)
Q Consensus        99 ~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  173 (412)
                      .  .......+|.+.++++++++.+|..|+.+|..++....+.   ......+|.+.+++.+.++.++..++.++..++.
T Consensus        90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~  169 (644)
T 2z6h_A           90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  169 (644)
T ss_dssp             HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence            0  0122357899999999999999999999999998764322   2245689999999998899999888877776653


Q ss_pred             ccCh---------------------------------------------hHHHHhhHHHHHHhhcccChHHHHHHHHHHH
Q 015150          174 ILGK---------------------------------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLD  208 (412)
Q Consensus       174 ~~~~---------------------------------------------~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~  208 (412)
                      ..+.                                             .......+|.+..++.+.+..++..++..|.
T Consensus       170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~  249 (644)
T 2z6h_A          170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR  249 (644)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            1100                                             0001134566666666667777777777777


Q ss_pred             HHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCch--hHHHHHHHH
Q 015150          209 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKV--YSIRDAAAN  283 (412)
Q Consensus       209 ~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~--~~vr~~a~~  283 (412)
                      .++...........++|.+.+++.+.++.+|..++.++..++..-..   .......++.++.++.+..  +.++..|+.
T Consensus       250 nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~  329 (644)
T 2z6h_A          250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  329 (644)
T ss_dssp             HHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHH
Confidence            77654332222356889999999999999999999999988763211   1122346788888887643  789999999


Q ss_pred             HHHHHHHHhChh------hhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCc-
Q 015150          284 NVKRLAEEFGPD------WAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVP-  353 (412)
Q Consensus       284 ~l~~l~~~~~~~------~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~-  353 (412)
                      +|+.+....+..      ......+|.+.+++.+++ +.+|..++.+++.++..-...  .....++|.+.+++.+.++ 
T Consensus       330 aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~  409 (644)
T 2z6h_A          330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD  409 (644)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchh
Confidence            999987432211      123457899999999875 799999999999997532221  2345678888888776443 


Q ss_pred             ---------------------hHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          354 ---------------------NIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       354 ---------------------~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                                           .++..++.+|..++..-...  ......+|.|..++.+++.+++..+..++..+..
T Consensus       410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             HTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence                                 45556666666665432221  2245688999999999999999999999888753

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.86  E-value=3.6e-19  Score=166.00  Aligned_cols=378  Identities=12%  Similarity=0.105  Sum_probs=278.4

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhc--cCc--hhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCC---C
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKL--LEP--QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP---E  100 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~--~~~--~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~---~  100 (412)
                      ++-+.+.++++++..+..|+..+..+...  .++  .....-++|.+.+++++ .++.++..++.+|++++.....   .
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            34455667888888888899888887643  222  23345589999998864 5689999999999999842111   0


Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC---HHHHHHhhhhhHHHhccCCc-----HHHHHHHHHHHHhcC
Q 015150          101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMA  172 (412)
Q Consensus       101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~  172 (412)
                      ....-.+|.+.+++.+++..+|..|+.+|+.++...+   ........++.+..++.+.+     ..+...++.++..++
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  218 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  218 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence            1223479999999999999999999999999975422   22334557888888876543     345666777777776


Q ss_pred             ccc---ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHh
Q 015150          173 PIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYI  246 (412)
Q Consensus       173 ~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l  246 (412)
                      ..-   ..-.....++|.+.+++.+++++++..++.+|..++..-..   ......++|.+..++.++++.++..++.++
T Consensus       219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL  298 (510)
T 3ul1_B          219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  298 (510)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence            432   12223467899999999999999999999999998754221   112345789999999999999999999999


Q ss_pred             hHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHH
Q 015150          247 PLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTI  320 (412)
Q Consensus       247 ~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~  320 (412)
                      +.++.....   .......++.+..++.+++..+|..|+.+++.+......   ......++|.+...+.+.++.+|..+
T Consensus       299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  378 (510)
T 3ul1_B          299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  378 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence            888643211   112233567778889999999999999999998742211   12234688999999999999999999


Q ss_pred             HHHHHHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc---h-HHH-----HhhHHHHHHhhc
Q 015150          321 LQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---Q-SVV-----EKSIRPCLVELS  387 (412)
Q Consensus       321 ~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~-~~~-----~~~i~~~l~~l~  387 (412)
                      +.++..++.....+.    ....+++.|..++++++++++..++.+|..+.+...   . +.+     ....+..+..+.
T Consensus       379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq  458 (510)
T 3ul1_B          379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ  458 (510)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence            999999986544432    345688999999999999999999999998875422   1 112     234567888899


Q ss_pred             CCCCccHHHHHHHHHHHhH
Q 015150          388 EDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       388 ~d~~~~vr~~a~~al~~~~  406 (412)
                      .+++.+|+..|...+.+.-
T Consensus       459 ~~~n~~i~~~A~~iie~yf  477 (510)
T 3ul1_B          459 RHENESVYKASLNLIEKYF  477 (510)
T ss_dssp             GCSSHHHHHHHHHHHHHHC
T ss_pred             cCCCHHHHHHHHHHHHHHC
Confidence            9999999999999887653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.86  E-value=9.7e-19  Score=164.07  Aligned_cols=377  Identities=12%  Similarity=0.109  Sum_probs=279.5

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhcc--Cc--hhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCC---C
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLL--EP--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E  100 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~--~~--~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~---~  100 (412)
                      ++-+.+.+.++++..+..|+..+..+...-  ++  ......++|.+.+++. +.++.++..++.+|+.++.....   .
T Consensus        78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~  157 (529)
T 3tpo_A           78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  157 (529)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            455566677888888888888888776432  22  2344558899988875 56689999999999999853211   1


Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC---HHHHHHhhhhhHHHhccCCc-----HHHHHHHHHHHHhcC
Q 015150          101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMA  172 (412)
Q Consensus       101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~  172 (412)
                      ....-.+|.+..++.+++..+|..|+.+|+.++...+   ........++.+..++.+.+     ..+...++.++..++
T Consensus       158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  237 (529)
T 3tpo_A          158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  237 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence            1223578999999999999999999999999975321   22334557888888876543     345667777777776


Q ss_pred             ccc---ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHh
Q 015150          173 PIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYI  246 (412)
Q Consensus       173 ~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l  246 (412)
                      ...   ........++|.+..++.+++++++..++.+|..+......   ......++|.+..++.++++.++..++.++
T Consensus       238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL  317 (529)
T 3tpo_A          238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  317 (529)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence            432   12223467889999999999999999999999988754221   112345789999999999999999999999


Q ss_pred             hHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHH
Q 015150          247 PLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTI  320 (412)
Q Consensus       247 ~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~  320 (412)
                      +.++.....   .......++.+..++.+++..+|..|+.+|+.+......   ......++|.+..++.+.++.+|..+
T Consensus       318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  397 (529)
T 3tpo_A          318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA  397 (529)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence            888643211   112234678889999999999999999999998753211   12234688999999999999999999


Q ss_pred             HHHHHHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh---ch-HHH-----HhhHHHHHHhhc
Q 015150          321 LQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQ-SVV-----EKSIRPCLVELS  387 (412)
Q Consensus       321 ~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~---~~-~~~-----~~~i~~~l~~l~  387 (412)
                      +.+++.++.....+.    ....++|.|+.+|+++++.++..++.+|..+....   +. +.+     ....+..+..+.
T Consensus       398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq  477 (529)
T 3tpo_A          398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ  477 (529)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence            999999986544432    24468999999999999999999999999987532   21 222     224567888899


Q ss_pred             CCCCccHHHHHHHHHHHh
Q 015150          388 EDPDVDVRFFATQALQSK  405 (412)
Q Consensus       388 ~d~~~~vr~~a~~al~~~  405 (412)
                      .+++.+|+..|...+.+.
T Consensus       478 ~~~n~~i~~~A~~iie~y  495 (529)
T 3tpo_A          478 RHENESVYKASLNLIEKY  495 (529)
T ss_dssp             GCSSHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH
Confidence            999999999999888765

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.85  E-value=3.6e-19  Score=153.30  Aligned_cols=254  Identities=20%  Similarity=0.140  Sum_probs=193.3

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  185 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  185 (412)
                      .++.+.+.++|+++.+|..|+.+|+.+..        ...++.+..++.|+++.+|..++.+++.+....   .....++
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l~   92 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNVF   92 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHHH
Confidence            46778888888888999988888887652        236677888888889999999999888876321   1123455


Q ss_pred             HHHHH-hhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHH
Q 015150          186 PIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  264 (412)
Q Consensus       186 ~~l~~-~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  264 (412)
                      +.+.+ +++|+++.||..++.+|+.+....+  ...+.+++.+...++|+++.+|..++..++.+..        +..+|
T Consensus        93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~  162 (280)
T 1oyz_A           93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  162 (280)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence            66653 5678889999999999998874322  1124678888889999999999999998876653        22567


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150          265 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  344 (412)
Q Consensus       265 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l  344 (412)
                      .+..++.|+++.||..|+.+++.+.    ..  ....++.+...+.|+++.+|..++.+++.+.        .+..+|.+
T Consensus       163 ~L~~~l~d~~~~vr~~a~~aL~~~~----~~--~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~L  228 (280)
T 1oyz_A          163 LLINLLKDPNGDVRNWAAFAININK----YD--NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVL  228 (280)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHT----CC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhc----cC--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHHH
Confidence            7888899999999999999998762    11  2457788888999999999999999999876        24577888


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcC-CCCccHHHHHHHHHHH
Q 015150          345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS  404 (412)
Q Consensus       345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~  404 (412)
                      ...++|+.  ||..++.+++.+..        ...+|.|..+++ +++++++..+..++..
T Consensus       229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence            88888854  89999999998864        367888888664 4677888888877754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.85  E-value=2.8e-19  Score=170.26  Aligned_cols=386  Identities=14%  Similarity=0.125  Sum_probs=217.5

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR   81 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~   81 (412)
                      |.+|-.|+++++.+..    ....+.+.+.+.+++.|+++.+|+.|+.++..+....++  ....+++.+..++.|+++.
T Consensus       121 ~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~--~v~~~~~~l~~lL~D~d~~  194 (618)
T 1w63_A          121 QFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE--LMEMFLPATKNLLNEKNHG  194 (618)
T ss_dssp             SHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG--GGGGGGGGTTTSTTCCCHH
T ss_pred             HhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhCCCCHh
Confidence            5677777777776652    344566777777777788888888888888887775432  2345667777777788888


Q ss_pred             HHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcC---------------CChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 015150           82 VRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLR---------------DNEAEVRIAAAGKVTKICRILNPELAIQHI  145 (412)
Q Consensus        82 vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~---------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  145 (412)
                      |+.+++.+|..++..-+. ......++|.+.+.+.               .+++..+...+++++.++..- ++ ....+
T Consensus       195 V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-~~-~~~~~  272 (618)
T 1w63_A          195 VLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-DD-SSEAM  272 (618)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-HH-HHHTT
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC-HH-HHHHH
Confidence            888888777777642110 0011233444443332               135566666666666655421 11 11223


Q ss_pred             hhhHHHhc------cCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH
Q 015150          146 LPCVKELS------SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  219 (412)
Q Consensus       146 ~~~l~~~~------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~  219 (412)
                      .+.+..++      ++.+..|...+++++..+...   .......++.+..++.++++++|..++.++..++..- ++.+
T Consensus       273 ~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~---~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p~~~  348 (618)
T 1w63_A          273 NDILAQVATNTETSKNVGNAILYETVLTIMDIKSE---SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD-HNAV  348 (618)
T ss_dssp             HHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC-HHHH
Confidence            33333322      223445555666665554321   1222344555666666666677777776666666542 2222


Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh--h-
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--W-  296 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~-  296 (412)
                       ....+.+..++.|++..+|..+++.+..++..-..    +.+++-+...+.+.+.++|..++.+++.++..+.+.  + 
T Consensus       349 -~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~  423 (618)
T 1w63_A          349 -QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWH  423 (618)
T ss_dssp             -GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred             -HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence             33444555556666666666666655555442211    223444445555555666666666666655543211  1 


Q ss_pred             --------------------------------hhhhhHHHHHhhhcC--CchHHHHHHHHHHHHhccccchh--------
Q 015150          297 --------------------------------AMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE--------  334 (412)
Q Consensus       297 --------------------------------~~~~~l~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~--------  334 (412)
                                                      .....++.+.+.+.+  ........+++++|..+..+...        
T Consensus       424 v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~  503 (618)
T 1w63_A          424 IDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPI  503 (618)
T ss_dssp             HHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccccc
Confidence                                            112233444444442  12334446788888887543210        


Q ss_pred             -HHHHhhHHHHHhhcC--CCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          335 -ITCSQLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       335 -~~~~~il~~l~~~l~--d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                       .....+.+.+..+++  +.++.||..++.++.+++...+.  ..+.+...+....+|.|.+||..|...+..+.
T Consensus       504 ~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~  576 (618)
T 1w63_A          504 QVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK  576 (618)
T ss_dssp             CCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence             001233444444443  56789999999999999876543  24556666777789999999999999877654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.83  E-value=3.7e-18  Score=159.19  Aligned_cols=342  Identities=13%  Similarity=0.073  Sum_probs=255.8

Q ss_pred             HHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCHH---
Q 015150           68 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE---  139 (412)
Q Consensus        68 ~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~---  139 (412)
                      ++-+.+.+++.+...+..++..+.++...-.+..    ...-++|.+.+++++ .++.++..|+.+|..++...++.   
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5666777788899999999999988764322221    223479999999974 45899999999999998643322   


Q ss_pred             HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccC-----hHHHHHHHHHHHHHH
Q 015150          140 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQVN  211 (412)
Q Consensus       140 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~~~~~l~~i~  211 (412)
                      ......+|.+.+++++++..||..++++++.++..-.   ........++.+..++.+.+     ..+...+..++..++
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  218 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  218 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence            3344589999999999999999999999999975321   12223467788888887644     234556667777776


Q ss_pred             Hhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 015150          212 QVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNV  285 (412)
Q Consensus       212 ~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  285 (412)
                      ....+   -.....++|.+.+++.++++.++..++.++..++......   .....++|.+..++.+++..++..++.++
T Consensus       219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL  298 (510)
T 3ul1_B          219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  298 (510)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence            54321   1223678999999999999999999999998887533211   11234678899999999999999999999


Q ss_pred             HHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHH
Q 015150          286 KRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNV  359 (412)
Q Consensus       286 ~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~  359 (412)
                      +.+...-..   .......++.+..++.+++..+|..++++++.++......   .....++|.++.++.+.++.+|..+
T Consensus       299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  378 (510)
T 3ul1_B          299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  378 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence            988642211   1123457788888999999999999999999997543321   2345689999999999999999999


Q ss_pred             HHHHHHHhhhhchHH----HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150          360 AKVLQSLIPIVDQSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       360 ~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      +++|..++..-..+.    ....+++.|..+++.+|++++..+..++..+.+..
T Consensus       379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  432 (510)
T 3ul1_B          379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  432 (510)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            999999986544432    34578899999999999999999999999987643

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.83  E-value=8.4e-18  Score=157.69  Aligned_cols=343  Identities=13%  Similarity=0.072  Sum_probs=258.3

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHH--
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE--  139 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--  139 (412)
                      -++.+.+.+++.++..+..++..+.++...-....    ....++|.+.+++. +.++.++..|+.+|..++......  
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~  156 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  156 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            56677778888899999999998887753222221    23457999999986 556899999999999998654332  


Q ss_pred             -HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc---ChhHHHHhhHHHHHHhhcccC-----hHHHHHHHHHHHHH
Q 015150          140 -LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL---GKDATIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQV  210 (412)
Q Consensus       140 -~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~~~~~l~~i  210 (412)
                       ......+|.+..++.+++..+|..++++|+.++..-   .........++.+..++.+.+     ..+...+..++..+
T Consensus       157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  236 (529)
T 3tpo_A          157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  236 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence             344558999999999999999999999999997432   111223457788888887643     23455666677776


Q ss_pred             HHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 015150          211 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANN  284 (412)
Q Consensus       211 ~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~  284 (412)
                      +....+   -.....++|.+..++.++++.++..++.++..++......   .....++|.+..++.+++..++..++.+
T Consensus       237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a  316 (529)
T 3tpo_A          237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  316 (529)
T ss_dssp             HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence            654221   1223678999999999999999999999998887643211   1123467889999999999999999999


Q ss_pred             HHHHHHHhC---hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHH
Q 015150          285 VKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFN  358 (412)
Q Consensus       285 l~~l~~~~~---~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~  358 (412)
                      ++.++..-.   ........++.+..++.+++..+|..++++++.++......   .....++|.++.++.+.++.+|..
T Consensus       317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~  396 (529)
T 3tpo_A          317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA  396 (529)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHH
Confidence            999874211   11223467888999999999999999999999997543221   234568999999999999999999


Q ss_pred             HHHHHHHHhhhhchHH----HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150          359 VAKVLQSLIPIVDQSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       359 ~~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                      ++++|+.++..-.++.    ....++|.|..+++.+|++++..+..++..+.+..
T Consensus       397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  451 (529)
T 3tpo_A          397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  451 (529)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999986544432    34568899999999999999999999999987643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.82  E-value=9.9e-19  Score=150.51  Aligned_cols=253  Identities=15%  Similarity=0.081  Sum_probs=179.7

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL  146 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  146 (412)
                      -++.+...+.|+++.+|..++..|+.+..        +..++.+.++++|+++.+|..|+.+|+.+....  . ....++
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~-~~~~l~   92 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--K-CEDNVF   92 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--T-THHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--c-cchHHH
Confidence            45566677778888888888888887652        456777888888888888888888887765311  1 112345


Q ss_pred             hhHHH-hccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHH
Q 015150          147 PCVKE-LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  225 (412)
Q Consensus       147 ~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~  225 (412)
                      +.+.+ +.+|+++.||..++.+++.+....+  .....++|.+...++|+++.||..++.+|+.+..        +..+|
T Consensus        93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~  162 (280)
T 1oyz_A           93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  162 (280)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence            55553 4578888888888888887753211  1134567888888888888888888888887653        23677


Q ss_pred             HHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHH
Q 015150          226 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV  305 (412)
Q Consensus       226 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l  305 (412)
                      .+..+++|+++.+|..++..++.+...      .+...|.+..+++|+++.||..|+.+|+.+.        ....+|.+
T Consensus       163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~L  228 (280)
T 1oyz_A          163 LLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVL  228 (280)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHHH
Confidence            788888888888888888888765311      1346777888888999999999998887754        24567788


Q ss_pred             HhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC-CCchHHHHHHHHHH
Q 015150          306 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQ  364 (412)
Q Consensus       306 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~  364 (412)
                      ...++|++  +|..++.+++.+..        +..+|.+.+++++ +++.++..++..+.
T Consensus       229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            88887765  78888888888753        3577888887765 46677777776664

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.82  E-value=1.1e-17  Score=159.42  Aligned_cols=366  Identities=11%  Similarity=0.065  Sum_probs=253.8

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150           26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD  105 (412)
Q Consensus        26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  105 (412)
                      -.+.+.+.+-++|+++.+|..|+.+++.+..    .+....+.+.+.+++.|+++.||+.|+.+++++....+ +. ...
T Consensus       106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~-v~~  179 (618)
T 1w63_A          106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-EL-MEM  179 (618)
T ss_dssp             HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GG-GGG
T ss_pred             HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HH-HHH
Confidence            3455677777889999999999999999873    33567789999999999999999999999999998543 22 246


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-HHHHhhhhhHHHhcc---------------CCcHHHHHHHHHHHH
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSS---------------DSSQHVRSALATVIM  169 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~---------------d~~~~vr~~~~~~l~  169 (412)
                      +++.+..++.|.++.|+..|+.++..+++.-++. .....++|.+.+.+.               ..++..+..++++++
T Consensus       180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~  259 (618)
T 1w63_A          180 FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLR  259 (618)
T ss_dssp             GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHH
Confidence            7888889999999999999999999987643221 122345565555443               257888888999998


Q ss_pred             hcCcccChhHHHHhhHHHHHHhhc------ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHH
Q 015150          170 GMAPILGKDATIEQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII  243 (412)
Q Consensus       170 ~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~  243 (412)
                      .++..-  ....+.+.+.+..++.      +.+..|...+++++..+..   .........+.+..++.++++.+|..++
T Consensus       260 ~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL  334 (618)
T 1w63_A          260 ILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVAL  334 (618)
T ss_dssp             HHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHH
T ss_pred             HhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            887532  1123345555555542      3356788888888776532   1223345778888889999999999999


Q ss_pred             HHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150          244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQA  323 (412)
Q Consensus       244 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~  323 (412)
                      .++..++...+. .+ ....+.++.++.|++..||..|+..+..++..-.    .+.+++.+.+.+.+.+..+|..++.+
T Consensus       335 ~~L~~i~~~~p~-~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~  408 (618)
T 1w63_A          335 TSLLKTVQTDHN-AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASG  408 (618)
T ss_dssp             HHHHHHHHHHHH-HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHhhCHH-HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999886432 22 2245567888999999999999999888775322    24567777777777888899999999


Q ss_pred             HHHhccccchh--HH---------------------------------HHhhHHHHHhhcCC--CCchHHHHHHHHHHHH
Q 015150          324 ISLLAPVMGSE--IT---------------------------------CSQLLPVVINASKD--RVPNIKFNVAKVLQSL  366 (412)
Q Consensus       324 l~~l~~~~~~~--~~---------------------------------~~~il~~l~~~l~d--~~~~vR~~~~~~l~~l  366 (412)
                      ++.++..++..  .+                                 ...+++.+...+.+  ....+...+++.+|+.
T Consensus       409 I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy  488 (618)
T 1w63_A          409 IFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEY  488 (618)
T ss_dssp             HHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhh
Confidence            99998765321  11                                 11233344444442  1233444677777777


Q ss_pred             hhhhchH---------HHHhhHHHHHHhhcC--CCCccHHHHHHHHHHHhHHh
Q 015150          367 IPIVDQS---------VVEKSIRPCLVELSE--DPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       367 ~~~~~~~---------~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~~~~~~  408 (412)
                      +..+...         .....+.+.+..+++  ..+..||..+..|+.++...
T Consensus       489 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~  541 (618)
T 1w63_A          489 GDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTR  541 (618)
T ss_dssp             HHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            6543210         011234555555443  56788999998888777643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.77  E-value=6.5e-16  Score=146.56  Aligned_cols=390  Identities=11%  Similarity=0.055  Sum_probs=212.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhc--cCCchHHHHHHHHhHHHHhhccCchhhh-hhhHHHHHhhccCC
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT--QDDQDSVRLLAVEGCGALGKLLEPQDCV-AHILPVIVNFSQDK   78 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~--~~~~~~~r~~a~~~l~~i~~~~~~~~~~-~~l~~~l~~l~~d~   78 (412)
                      |.+|-.|+.+++.+..    ....+.+.|.+.+++  .|.++.||+.|+.++..+.+..+ +... ..+.+.+.+++.|+
T Consensus       125 ~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~  199 (621)
T 2vgl_A          125 PTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQ  199 (621)
T ss_dssp             HHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCC
Confidence            5667777777776543    345667777788887  78888888888888888887543 3222 26777888888888


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCC-------------hHHHHHHHHHHHHHHHHhh-------
Q 015150           79 SWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDN-------------EAEVRIAAAGKVTKICRIL-------  136 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-------------~~~vr~~a~~~l~~l~~~~-------  136 (412)
                      ++.|+.+++..+..++..-+..  ...+.++..+.+++.+.             ++..+...++.+..++..-       
T Consensus       200 d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~  279 (621)
T 2vgl_A          200 HLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGR  279 (621)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHH
Confidence            8888888888888776532110  00011111122211100             1222222222222211100       


Q ss_pred             ------------------------------------------CHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150          137 ------------------------------------------NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  174 (412)
Q Consensus       137 ------------------------------------------~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  174 (412)
                                                                +...........+..++.++++.+|..++.++..++..
T Consensus       280 l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~  359 (621)
T 2vgl_A          280 LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASS  359 (621)
T ss_dssp             HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhc
Confidence                                                      01112223334444445555556666666666555544


Q ss_pred             cChhHHHHhhHHHHHHhhc-ccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150          175 LGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  253 (412)
Q Consensus       175 ~~~~~~~~~l~~~l~~~l~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  253 (412)
                      .+.........+.+...++ |++..+|..++..+..++..   +.+ +.++..+..++.+.+...|..++..++.++..+
T Consensus       360 ~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv-~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~  435 (621)
T 2vgl_A          360 EFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNA-QQIVAEMLSYLETADYSIREEIVLKVAILAEKY  435 (621)
T ss_dssp             TTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            3221222333444445555 55556665555555554422   111 344444555555555556666666666555544


Q ss_pred             ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc--hHHHHHHHHHHHHhcccc
Q 015150          254 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVM  331 (412)
Q Consensus       254 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~  331 (412)
                      .+.  ....+..+++++.+....+...++..+..++....  ......+..+.+.+.++.  ..+-..+++.+|..+..+
T Consensus       436 ~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~  511 (621)
T 2vgl_A          436 AVD--YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLI  511 (621)
T ss_dssp             CSS--THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHH
T ss_pred             CCc--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHh
Confidence            322  12344445555544444444444444444443221  122334445555666654  234455668888887654


Q ss_pred             chhHH--HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcC--CCCccHHHHHHHHHHHhH
Q 015150          332 GSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE--DPDVDVRFFATQALQSKD  406 (412)
Q Consensus       332 ~~~~~--~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~~~~  406 (412)
                      .....  -..++..+.+.+.+.++.||..++.++.+++...+.  ..+.+...+.....  |.|.|||..|..-..-+.
T Consensus       512 ~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~  588 (621)
T 2vgl_A          512 AGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST  588 (621)
T ss_dssp             HSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence            43211  124556667677788899999999999998765432  23455666666666  999999999998776653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.77  E-value=2.7e-17  Score=138.06  Aligned_cols=181  Identities=17%  Similarity=0.215  Sum_probs=87.4

Q ss_pred             HHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhh--hh
Q 015150          225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDW--AM  298 (412)
Q Consensus       225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~--~~  298 (412)
                      +.+.+.+.|++|+.|.+++..+..+.+..+.   ..+ ..+++.+...+. |.+..||..|+.+++.++..++..+  +.
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3344444555555555555555555443211   111 234444555552 5555555555555555555444321  22


Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----H
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----V  374 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~  374 (412)
                      ..++|.+.+.++|++..+|.++..++..+....+    .+.++|.+...++++++.+|..++.+++.+....+++    .
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~  172 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK  172 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence            3455555555555555555555555555544333    1234455555555555555555555555544333221    2


Q ss_pred             HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          375 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       375 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      +.+.++|.+..+++|++++||..|..+++.++..+|
T Consensus       173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            233455555555555555555555555555555544

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.75  E-value=3.7e-14  Score=142.54  Aligned_cols=393  Identities=10%  Similarity=0.082  Sum_probs=242.3

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhc-cC--------chhhhhhhHHHHHhhccCC
Q 015150            8 AATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL-LE--------PQDCVAHILPVIVNFSQDK   78 (412)
Q Consensus         8 a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~-~~--------~~~~~~~l~~~l~~l~~d~   78 (412)
                      |-+.|..+-+   ...++..++.++.  ..+.+..+|..|+..+.+.... +.        +++.+..+-..+++.+.++
T Consensus        23 Ae~~L~~~~~---~p~~~~~L~~il~--~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~   97 (960)
T 1wa5_C           23 SERNLRQLET---QDGFGLTLLHVIA--STNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL   97 (960)
T ss_dssp             HHHHHHHHHT---STTHHHHHHHHHH--CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhhc---CCCHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC
Confidence            5555554421   1234444444432  1233568999999999877653 22        2234444555555555555


Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-----HH------HHHhhhh
Q 015150           79 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-----EL------AIQHILP  147 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~~------~~~~~~~  147 (412)
                      +..+|...+.+++.++..-.+ ..|++++|.+.+.+++.++..+..++.++..+++....     +.      ......|
T Consensus        98 ~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (960)
T 1wa5_C           98 PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTA  176 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence            689999999999999987555 45899999999999988888999999999999886531     11      1222233


Q ss_pred             hHHH-------hccCCcH---HHH------HHHHHHHHhcCc-ccChhH--HHHhhHHHHHHhhcc-----------cC-
Q 015150          148 CVKE-------LSSDSSQ---HVR------SALATVIMGMAP-ILGKDA--TIEQLLPIFLSLLKD-----------EF-  196 (412)
Q Consensus       148 ~l~~-------~~~d~~~---~vr------~~~~~~l~~l~~-~~~~~~--~~~~l~~~l~~~l~d-----------~~-  196 (412)
                      .+..       .+++...   .+|      ..+++++..+.. .++...  ......+.+..++..           .+ 
T Consensus       177 ~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~  256 (960)
T 1wa5_C          177 PFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHA  256 (960)
T ss_dssp             HHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CC
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccc
Confidence            2222       2444321   233      335555544321 112111  113444555555421           11 


Q ss_pred             ---hHHHHHHHHHHHHHHHhhchhh--HHhhHHHHHHHHhc-----CCCchHHHHHHHHhhHHHhhh------ChhhHHH
Q 015150          197 ---PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQL------GVGFFDD  260 (412)
Q Consensus       197 ---~~vr~~~~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~-----d~~~~vr~~~~~~l~~l~~~~------~~~~~~~  260 (412)
                         +.+|+.+...+..+....+...  ..+.+++.+.+.+.     ..+.+++..+++.+..+++.-      ....+..
T Consensus       257 ~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~  336 (960)
T 1wa5_C          257 SVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMN  336 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHH
Confidence               3577888888888776544321  22334444444443     345577888888887765421      1112334


Q ss_pred             HHH-HHHHHHhc-----------------------CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc------
Q 015150          261 KLG-ALCMQWLK-----------------------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------  310 (412)
Q Consensus       261 ~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~------  310 (412)
                      .++ ++++..+.                       +..+.+|.+|...+..++..++ +.....+++.+.+.+.      
T Consensus       337 ~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~  415 (960)
T 1wa5_C          337 NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDP  415 (960)
T ss_dssp             HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCc
Confidence            444 45555431                       1123589999999999999887 4445566676666665      


Q ss_pred             CCchHHHHHHHHHHHHhcccc-----chh------HHHHhhHHHHHhhcCCC---CchHHHHHHHHHHHHhhhhchHHHH
Q 015150          311 NPHYLYRMTILQAISLLAPVM-----GSE------ITCSQLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQSVVE  376 (412)
Q Consensus       311 ~~~~~~r~~~~~~l~~l~~~~-----~~~------~~~~~il~~l~~~l~d~---~~~vR~~~~~~l~~l~~~~~~~~~~  376 (412)
                      +++|+.|++++.+++.++...     +..      .+.+.+...++..+.|+   ++-||..++++++.++..+.++ +.
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l  494 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QL  494 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HH
Confidence            678999999999999997542     111      11111222334445666   8999999999999999887543 55


Q ss_pred             hhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          377 KSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       377 ~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      ..++|.+...+.|++..||.+|+.|+..+++.
T Consensus       495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          495 IELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            77888888888899999999999999998874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.75  E-value=1.7e-16  Score=130.38  Aligned_cols=188  Identities=19%  Similarity=0.203  Sum_probs=130.4

Q ss_pred             hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 015150           65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH  144 (412)
Q Consensus        65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  144 (412)
                      +..++.+.+.++|+++.+|..++..|+.+..        ...++.+.+++.|+++.||..++.+|+.+..        ..
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~   81 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   81 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            3456667777778888888888888776542        3567777778888888888888888877643        23


Q ss_pred             hhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHH
Q 015150          145 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  224 (412)
Q Consensus       145 ~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~  224 (412)
                      .++.+.+++.|+++.||..++.+++.+..        ...+|.+..+++|+++.||..++.+|+.+..        +..+
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  145 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  145 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence            56777777778888888888888777653        2456777777777788888888877777642        2356


Q ss_pred             HHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh
Q 015150          225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  292 (412)
Q Consensus       225 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  292 (412)
                      +.+..+++|+++.+|..++..++.+..        +...+.+..+++|+++.||..|..+|+.+....
T Consensus       146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            667777777778888877777766532        335666677777777778888877777665543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.74  E-value=8.4e-17  Score=132.23  Aligned_cols=188  Identities=16%  Similarity=0.224  Sum_probs=144.7

Q ss_pred             hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHH
Q 015150          183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  262 (412)
Q Consensus       183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  262 (412)
                      ..++.+...++|+++.+|..++..|+.+..        +..+|.+.+++.|+++.+|..++..++.+..        +..
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~   82 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA   82 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGG
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence            556778888888888999888888887653        2466778888888888999988888876542        124


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHH
Q 015150          263 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLP  342 (412)
Q Consensus       263 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~  342 (412)
                      .+.+..+++|+++.||..|+.+|+.+..        ...++.+.+.+.|+++.+|..++.+++.+..        +..++
T Consensus        83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~  146 (211)
T 3ltm_A           83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE  146 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence            5667778889999999999888887532        3466888888888999999999999988752        35678


Q ss_pred             HHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          343 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       343 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      .+..+++|+++.||..++.+|+.+..        +...+.|..+++|+++.||..|..+|+.+...-+
T Consensus       147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            88888889999999999999998854        4677888888888999999999999988766543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.74  E-value=1.2e-16  Score=134.07  Aligned_cols=192  Identities=16%  Similarity=0.157  Sum_probs=112.2

Q ss_pred             CchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHh
Q 015150           59 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRI  135 (412)
Q Consensus        59 ~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~  135 (412)
                      ++.+....+-+.+.+.++|++|..|+.++..|..++...+.  .....++++.+...+. |++..||..|+.+++.+++.
T Consensus         8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~   87 (242)
T 2qk2_A            8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG   87 (242)
T ss_dssp             SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            34444555666677778889999999999999988876432  1223567888888884 88888899888888888876


Q ss_pred             hCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          136 LNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       136 ~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                      +++.  .+...++|.+...+.|+++.||.++..++..++...+    .+.++|.+...+++.++.+|..++..++.+...
T Consensus        88 l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~  163 (242)
T 2qk2_A           88 LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTR  163 (242)
T ss_dssp             HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            6543  3444566666666666666666666666665554332    123444444444444455555555555444333


Q ss_pred             hchh----hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC
Q 015150          214 IGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  254 (412)
Q Consensus       214 ~~~~----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  254 (412)
                      .+++    ...+.++|.+..+++|+++++|.++..+++.++..+|
T Consensus       164 ~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          164 TQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            2211    1123344444444444444444444444444444444

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.74  E-value=2.8e-15  Score=142.21  Aligned_cols=368  Identities=15%  Similarity=0.120  Sum_probs=250.2

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhc--cCCChHHHHHHHHHHHHHHHHhCCCCcc
Q 015150           26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTR  103 (412)
Q Consensus        26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~--~d~~~~vR~~~~~~l~~l~~~~~~~~~~  103 (412)
                      -.+.+.+.+-++|+++.+|..|+.+++.+..    .+..+.+.|.+.+++  .|+++.||+.|+.++.++.+..++....
T Consensus       110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~  185 (621)
T 2vgl_A          110 RLINNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM  185 (621)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc
Confidence            3456677777889999999999999998853    336678889999998  9999999999999999999854332222


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccC-------------CcHHHHHHHHHHH
Q 015150          104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD-------------SSQHVRSALATVI  168 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d-------------~~~~vr~~~~~~l  168 (412)
                      ..+++.+.++++|+++.|+.+|+.++..++..-+..  ...+.++..+.+++.+             +++..+..+.+.+
T Consensus       186 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll  265 (621)
T 2vgl_A          186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL  265 (621)
T ss_dssp             CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred             hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence            478999999999999999999999999988753321  1223344444444322             1678888888888


Q ss_pred             HhcCcccChhHHHHhhHHHHHHhh---ccc-----------ChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCC
Q 015150          169 MGMAPILGKDATIEQLLPIFLSLL---KDE-----------FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  234 (412)
Q Consensus       169 ~~l~~~~~~~~~~~~l~~~l~~~l---~d~-----------~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~  234 (412)
                      ..++..-.. ...+.+.+.+..++   .+.           ...|...+++++..+.   ....+.......+..++.++
T Consensus       266 ~~~~~~~d~-~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~  341 (621)
T 2vgl_A          266 QCYPPPEDP-AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHR  341 (621)
T ss_dssp             GGSSSCSSH-HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCS
T ss_pred             HHhCCCCCH-HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCC
Confidence            887743222 22233333333332   111           1255555565555543   22334466778888899899


Q ss_pred             CchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCc
Q 015150          235 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH  313 (412)
Q Consensus       235 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~  313 (412)
                      ++.+|..++.++..++...+.........+.++.++. |++..||..++..+..++..   + -.+.++..+.+.+.+.+
T Consensus       342 ~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~-Nv~~Iv~eL~~yl~~~d  417 (621)
T 2vgl_A          342 ETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR---S-NAQQIVAEMLSYLETAD  417 (621)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---H-HHHHHHHHHHHHHHHCC
T ss_pred             CcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---h-hHHHHHHHHHHHHHhcC
Confidence            9999999999999998765422223345666778888 99999999999988776632   2 24667888888888888


Q ss_pred             hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCcc
Q 015150          314 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD  393 (412)
Q Consensus       314 ~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~  393 (412)
                      ...|..++..++.++..+...  ....+..+++++.+....+...++..+..+......  ........+...+.|+...
T Consensus       418 ~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~  493 (621)
T 2vgl_A          418 YSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACH  493 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccch
Confidence            889999999999998766543  345566666666655444555666666655543321  2223444455555566543


Q ss_pred             --HHHHHHHHHHHhHHhh
Q 015150          394 --VRFFATQALQSKDQVM  409 (412)
Q Consensus       394 --vr~~a~~al~~~~~~~  409 (412)
                        +-..+.+.+|..+..+
T Consensus       494 ~~li~~~~wilGEy~~~~  511 (621)
T 2vgl_A          494 ENLVKVGGYILGEFGNLI  511 (621)
T ss_dssp             HHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHhcchHHHh
Confidence              4455668888876654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.73  E-value=2e-16  Score=128.88  Aligned_cols=187  Identities=16%  Similarity=0.233  Sum_probs=150.6

Q ss_pred             HhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHH
Q 015150          182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  261 (412)
Q Consensus       182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  261 (412)
                      ....+.+.+.++|+++.+|..++.+|+.+..        +..++.+.+.++|+++.+|..++..++.+..        +.
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~   76 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   76 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            3556788888999999999999988887653        2456778888889999999999888876532        12


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhH
Q 015150          262 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL  341 (412)
Q Consensus       262 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il  341 (412)
                      ..+.+...+.|+++.||..|+.+|+.+..        ...++.+...+.|+++.+|..++.+++.+..        ...+
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  140 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  140 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            55677788999999999999999887532        3467888888899999999999999998753        3577


Q ss_pred             HHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          342 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       342 ~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      +.+..+++|+++.||..++.+|+.+..        +..++.|..+++|+++.||..|.++++.+...
T Consensus       141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~  199 (201)
T 3ltj_A          141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSL  199 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence            888899999999999999999998853        46788888888899999999999999887653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.73  E-value=7.2e-16  Score=125.61  Aligned_cols=183  Identities=22%  Similarity=0.250  Sum_probs=107.4

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccch
Q 015150           27 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV  106 (412)
Q Consensus        27 ~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  106 (412)
                      ...+.+.++++|+++.+|..|+..++.+..        ...++.+.+++.|+++.+|..++..|+.+..        ...
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~   77 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA   77 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGG
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence            344555555666666666666666665442        1344555555566666666666666665532        345


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP  186 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  186 (412)
                      ++.+.++++|+++.||..|+.+|+.+..        ...++.+..++.|+++.||..++.+++.+..        ...++
T Consensus        78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~  141 (201)
T 3ltj_A           78 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE  141 (201)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence            5666666666666666666666665533        1245555666666666666666666666542        24455


Q ss_pred             HHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHH
Q 015150          187 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  249 (412)
Q Consensus       187 ~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l  249 (412)
                      .+..+++|+++.||..++.+|+.+..        +..++.+..+++|+++.+|..+...+..+
T Consensus       142 ~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          142 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            66666666666666666666666531        23455555555666666666666555543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.70  E-value=1.1e-13  Score=139.12  Aligned_cols=407  Identities=12%  Similarity=0.065  Sum_probs=251.6

Q ss_pred             chhHHHHHHHHHHHHHHh-h--------hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHH
Q 015150            2 PMVRRSAATNLGKFAATV-E--------AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV   72 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~-~--------~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~   72 (412)
                      +.+|..|+..|.+.++.. .        ++.....+-..+...+.++...+|...+.++..++..--++ .++.+++.+.
T Consensus        51 ~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~L~  129 (960)
T 1wa5_C           51 LSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSDLA  129 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-chhHHHHHHH
Confidence            468999999999988642 1        11223334444444444455789999999999999874343 5789999999


Q ss_pred             hhccCCChHHHHHHHHHHHHHHHHhCCCCc-----------ccchHH----HH---HHhcCCChH---HHH------HHH
Q 015150           73 NFSQDKSWRVRYMVANQLYELCEAVGPEPT-----------RSDVVP----AY---VRLLRDNEA---EVR------IAA  125 (412)
Q Consensus        73 ~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~-----------~~~l~~----~l---~~~l~d~~~---~vr------~~a  125 (412)
                      +.+++++...+..++.++..+++.......           .....|    .+   .+.+.++..   .+|      ..+
T Consensus       130 ~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  209 (960)
T 1wa5_C          130 SRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVL  209 (960)
T ss_dssp             TTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            999888888999999999999886542111           011122    22   222454322   233      334


Q ss_pred             HHHHHHHHHhhCHHHH---HHhhhhhHHHhcc--------C---C----cHHHHHHHHHHHHhcCcccChhH--HHHhhH
Q 015150          126 AGKVTKICRILNPELA---IQHILPCVKELSS--------D---S----SQHVRSALATVIMGMAPILGKDA--TIEQLL  185 (412)
Q Consensus       126 ~~~l~~l~~~~~~~~~---~~~~~~~l~~~~~--------d---~----~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~  185 (412)
                      ++++..+...--++..   ....++.+.+.+.        |   .    .+.+|..+++++..+....++..  ....++
T Consensus       210 ~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~  289 (960)
T 1wa5_C          210 IKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFI  289 (960)
T ss_dssp             HHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443221112211   1223344444331        1   1    14688899999888876554432  234556


Q ss_pred             HHHHHhhc-----ccChHHHHHHHHHHHHHHHhhc-hh-----hHHhhHH-HHHHHHh----------------------
Q 015150          186 PIFLSLLK-----DEFPDVRLNIISKLDQVNQVIG-ID-----LLSQSLL-PAIVELA----------------------  231 (412)
Q Consensus       186 ~~l~~~l~-----d~~~~vr~~~~~~l~~i~~~~~-~~-----~~~~~~~-~~l~~~~----------------------  231 (412)
                      +.+.+.+.     ..++.++..++..+..+++.-. ..     .+...++ +.+...+                      
T Consensus       290 ~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~  369 (960)
T 1wa5_C          290 QITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDL  369 (960)
T ss_dssp             HHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhcc
Confidence            66666554     3456788888888877754311 01     1122233 2222221                      


Q ss_pred             -cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc------CchhHHHHHHHHHHHHHHHHhC-hh--------
Q 015150          232 -EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK------DKVYSIRDAAANNVKRLAEEFG-PD--------  295 (412)
Q Consensus       232 -~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~-~~--------  295 (412)
                       .+..+..|.++...+..++...+ +...+.+++.+.+.+.      +.+|..|++|+.+++.+..... .+        
T Consensus       370 e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~  448 (960)
T 1wa5_C          370 EGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNN  448 (960)
T ss_dssp             HC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCT
T ss_pred             CcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccc
Confidence             12335789999999999999988 4455667777777776      6789999999999999975421 11        


Q ss_pred             --hhhhhhHHHHHhhhcCC---chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh
Q 015150          296 --WAMQHIVPQVLEMINNP---HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  370 (412)
Q Consensus       296 --~~~~~~l~~l~~~~~~~---~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  370 (412)
                        .+...+...+...+.++   +..+|.+++++++++++.+..+ +...++|.+++.+.|+++.||..|+.++..+....
T Consensus       449 ~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          449 LLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             TCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             cccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence              11111122333444566   7899999999999999988654 68889999999999999999999999999988642


Q ss_pred             c----------hH---HHHhhHHHHHHhhcCCC-----CccHHHHHHHHHHHhHHhhhC
Q 015150          371 D----------QS---VVEKSIRPCLVELSEDP-----DVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       371 ~----------~~---~~~~~i~~~l~~l~~d~-----~~~vr~~a~~al~~~~~~~~~  411 (412)
                      +          .+   .+.+.+++.+..+++..     .......+.++++.++..+++
T Consensus       528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~  586 (960)
T 1wa5_C          528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED  586 (960)
T ss_dssp             SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH
Confidence            2          22   23455555555655443     111335788888888777654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.69  E-value=1.9e-14  Score=132.14  Aligned_cols=373  Identities=12%  Similarity=0.075  Sum_probs=207.6

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC---CCCc
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPT  102 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~  102 (412)
                      +|.+..+++++++.++..|+..+..++..-++   .......+|.+.+++.++++.++..++.+|.+++....   ....
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~   83 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45566666666667777777777776644332   11223366666666666666777777777766664200   0011


Q ss_pred             ccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCH-HHHHHhhhhhHHHhc--------cCCcHHHHH--------HH
Q 015150          103 RSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNP-ELAIQHILPCVKELS--------SDSSQHVRS--------AL  164 (412)
Q Consensus       103 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~--------~d~~~~vr~--------~~  164 (412)
                      ....+|.+.+++. ++++.++..++.+|..++..-.. ..+.+..+|.+.+++        .+++...|.        .+
T Consensus        84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a  163 (457)
T 1xm9_A           84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA  163 (457)
T ss_dssp             HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred             HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence            2334666666666 55666666666666666654221 123335666666666        233444554        56


Q ss_pred             HHHHHhcCcccChhH---HHH--hhHHHHHHhhcc------cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcC
Q 015150          165 ATVIMGMAPILGKDA---TIE--QLLPIFLSLLKD------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  233 (412)
Q Consensus       165 ~~~l~~l~~~~~~~~---~~~--~l~~~l~~~l~d------~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d  233 (412)
                      ++++..++..  ++.   ..+  ..+|.+..++++      .+..++..++..+..+......+.  ......+......
T Consensus       164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~--~~~~~~~~~~~~~  239 (457)
T 1xm9_A          164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV--PTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS--CCHHHHHHHTC--
T ss_pred             HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccC--cchhhhccccccc
Confidence            6666666643  211   111  455666666654      233444444444444432211000  0000000000000


Q ss_pred             CCchHHHHHHHHhhHHHh-----------------hhCh-hhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhCh
Q 015150          234 RHWRVRLAIIEYIPLLAS-----------------QLGV-GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP  294 (412)
Q Consensus       234 ~~~~vr~~~~~~l~~l~~-----------------~~~~-~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~  294 (412)
                      ..  .......+++....                 .-|. ..+....++.+..+|.+ +++.++++|+.+|..+...-+.
T Consensus       240 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          240 AY--TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             cc--ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence            00  00000001111000                 0011 12234567777787764 4588999999999998753322


Q ss_pred             -------hhh-hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCc------hHHHHH
Q 015150          295 -------DWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVP------NIKFNV  359 (412)
Q Consensus       295 -------~~~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~------~vR~~~  359 (412)
                             ..+ ....+|.+.+++.+++..++..++.++..++..-... .+....+|.++++|.+.++      ++...+
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~  397 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA  397 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence                   112 2467899999999999999999999999997643222 3456789999999987644      577788


Q ss_pred             HHHHHHHhhhhchH---HHHhhHHHHHHhhcCCC-CccHHHHHHHHHHHhHH
Q 015150          360 AKVLQSLIPIVDQS---VVEKSIRPCLVELSEDP-DVDVRFFATQALQSKDQ  407 (412)
Q Consensus       360 ~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~~~~  407 (412)
                      +.+++.+...-...   ......+|.|..+++.+ +.++++.|...+..+..
T Consensus       398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            88998887532221   22356888888888887 88999999999987753

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.69  E-value=8.7e-14  Score=128.72  Aligned_cols=360  Identities=15%  Similarity=0.143  Sum_probs=246.2

Q ss_pred             HHhHHHHhhccC-chhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHH
Q 015150           48 VEGCGALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRI  123 (412)
Q Consensus        48 ~~~l~~i~~~~~-~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~  123 (412)
                      +-.|..+.+.-+ +..+...-+|.+.+++.++++.++..++.+|..++.....   .....-.+|.+.+++.+++..++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~  108 (584)
T 3l6x_A           29 LASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL  108 (584)
T ss_dssp             -----------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHH
T ss_pred             HHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHH
Confidence            344555544322 3334556788888888888999999999999888742111   112234689999999999999999


Q ss_pred             HHHHHHHHHHHhhCHH----HHHHhhhhhHHHhccC-CcHHHHHHHHHHHHhcCcccC-hhHHHHhhHHHHHHhhc----
Q 015150          124 AAAGKVTKICRILNPE----LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLLK----  193 (412)
Q Consensus       124 ~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~----  193 (412)
                      .|+.+|..++..-+++    ......+|.+.+++.. .+..++..++.++..++..-. +..+....+|.+.+++.    
T Consensus       109 ~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~s  188 (584)
T 3l6x_A          109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHS  188 (584)
T ss_dssp             HHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccc
Confidence            9999999998632222    3345578999998875 678899999999988876321 22223445677776551    


Q ss_pred             --------------ccChHHHHHHHHHHHHHHHhhc--hhhHH--hhHHHHHHHHhc------CCCchHHHHHHHHhhHH
Q 015150          194 --------------DEFPDVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLL  249 (412)
Q Consensus       194 --------------d~~~~vr~~~~~~l~~i~~~~~--~~~~~--~~~~~~l~~~~~------d~~~~vr~~~~~~l~~l  249 (412)
                                    .+++.|+..+..+|..+...-.  ...+.  ..+++.++.++.      +.+.+....++..|..+
T Consensus       189 g~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NL  268 (584)
T 3l6x_A          189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL  268 (584)
T ss_dssp             CCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHh
Confidence                          1257899999999988865321  11111  234556666544      34567777777777666


Q ss_pred             HhhhC---------------------------hh-hHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhCh---h--
Q 015150          250 ASQLG---------------------------VG-FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP---D--  295 (412)
Q Consensus       250 ~~~~~---------------------------~~-~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~--  295 (412)
                      +....                           .+ .+....++.++.++. ..++.++++|+.+|..++..-+.   .  
T Consensus       269 s~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~  348 (584)
T 3l6x_A          269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR  348 (584)
T ss_dssp             HTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred             hccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHH
Confidence            54321                           11 122456788888885 45789999999999998742211   1  


Q ss_pred             -hh-hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCC--------CchHHHHHHHHHH
Q 015150          296 -WA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDR--------VPNIKFNVAKVLQ  364 (412)
Q Consensus       296 -~~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~--------~~~vR~~~~~~l~  364 (412)
                       .+ ....+|.|.+++.+++..++..++.+|+.++..-... .+....+|.++.+|.+.        ...++..++.+|+
T Consensus       349 ~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~  428 (584)
T 3l6x_A          349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN  428 (584)
T ss_dssp             HHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHH
Confidence             11 2457899999999999999999999999998654433 46678999999999876        3568889999999


Q ss_pred             HHhhhhch---HHHHhhHHHHHHhhcCCC--CccHHHHHHHHHHHhHH
Q 015150          365 SLIPIVDQ---SVVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQ  407 (412)
Q Consensus       365 ~l~~~~~~---~~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~~~~  407 (412)
                      ++...-..   .......+|.|..++.+.  ...+++.|+.++..++.
T Consensus       429 NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          429 EVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            88643111   234567889999988775  78899999999998874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.67  E-value=2.6e-14  Score=120.76  Aligned_cols=225  Identities=12%  Similarity=0.096  Sum_probs=157.4

Q ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC---hhhH
Q 015150          185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF  258 (412)
Q Consensus       185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~  258 (412)
                      +|.+.++++++++++|..++.+|..++..-+.   .......+|.+.++++++++.+|..++.++..++....   ....
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            45666666666677777777777666544221   11223467777777777777777777777777664311   1112


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-
Q 015150          259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-  334 (412)
Q Consensus       259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-  334 (412)
                      ....+|.+..+++++++.+|..|+.+|+.+.....   ........+|.+.+++.++++.+|..++.+++.++...... 
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  163 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI  163 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            23467788888888888888888888888874211   11123457888888888888899999999999987643321 


Q ss_pred             --HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhh
Q 015150          335 --ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       335 --~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  409 (412)
                        ......+|.+..++.++++.+|..++.+|+.++..-..   ......++|.+..++.++++++|..|..++..+...-
T Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence              23456889999999999999999999999999753221   1234567888888888999999999999999887654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.4e-15  Score=124.77  Aligned_cols=201  Identities=15%  Similarity=0.142  Sum_probs=121.3

Q ss_pred             HhhHHHHHHhhcccChHHHHHHHHHHHH-HHHhhch-h---hHHhhHHHHHHHHh-cCCCchHHHHHHHHhhHHHhhhC-
Q 015150          182 EQLLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGI-D---LLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG-  254 (412)
Q Consensus       182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~-i~~~~~~-~---~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~-  254 (412)
                      ..+-+.|.+.+.+.++.-|..++.++.. ++..... .   .-...++..+.+.+ +|.+..+|..++.+++.++..++ 
T Consensus        15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            4444556666666667777666666666 6543221 0   11134555666666 56666777777777777776665 


Q ss_pred             hh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh---hhhhHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 015150          255 VG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLLA  328 (412)
Q Consensus       255 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~  328 (412)
                      +.   .+...++|.++..++|....||.++..++..+++..++...   .+.+++.+...+++++|++|+.++.+++.+.
T Consensus        95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            43   23345666666666666666777666666666666544221   2256666666666666777777777777666


Q ss_pred             cccch--h---HHH-HhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhh
Q 015150          329 PVMGS--E---ITC-SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL  386 (412)
Q Consensus       329 ~~~~~--~---~~~-~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l  386 (412)
                      ...+.  .   .+. +.++|.+.++++|+.+.||.++..+++.+...+|..    .+.|.+..+
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~----~~~p~l~~L  234 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN----TFVKTLEHL  234 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG----GGHHHHHHS
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHH
Confidence            66553  2   244 666677777777777777777777777776666653    344555444

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4e-15  Score=124.35  Aligned_cols=190  Identities=13%  Similarity=0.178  Sum_probs=146.9

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhhH-HHhhh---C--hhhHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhC
Q 015150          221 QSLLPAIVELAEDRHWRVRLAIIEYIPL-LASQL---G--VGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFG  293 (412)
Q Consensus       221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~-l~~~~---~--~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~  293 (412)
                      ..+-+.+.+.+.+++|+.|.+++..+.. +.+..   -  ...+ ..++..+.+.+ +|.+..||..|+.+++.+++.++
T Consensus        15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~   93 (249)
T 2qk1_A           15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLK   93 (249)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            3344445566788899999998888888 76432   1  2222 34677778888 78888899999999999888886


Q ss_pred             -h--h-hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh-H--HHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          294 -P--D-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-I--TCSQLLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       294 -~--~-~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~--~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                       +  . .+...++|.+++.++|....+|.++..++..+++.+++. .  +.+.+++.++..+++++|.+|..++.+++.+
T Consensus        94 ~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~  173 (249)
T 2qk1_A           94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS  173 (249)
T ss_dssp             TTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             3  2 467778899998888888888888888888888777432 1  2567888888888888899999999999888


Q ss_pred             hhhhch--H---HHH-hhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          367 IPIVDQ--S---VVE-KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       367 ~~~~~~--~---~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      ....+.  .   .+. ..++|.+.++++|++++||..|.++++.++..+|+
T Consensus       174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~  224 (249)
T 2qk1_A          174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM  224 (249)
T ss_dssp             HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence            877662  2   355 78888888888999999999999999998888885

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.66  E-value=1.2e-14  Score=122.83  Aligned_cols=225  Identities=16%  Similarity=0.122  Sum_probs=173.3

Q ss_pred             hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC---hh
Q 015150          183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VG  256 (412)
Q Consensus       183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~  256 (412)
                      .-.+.+...++++++++|..++.+|..+...-..   .......+|.+.+++.++++.+|..++.++..++....   ..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4467788888888899999999988766554111   12234678899999999999999999999888875321   11


Q ss_pred             hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150          257 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       257 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      ......+|.+..+++++++.+|..|+.+|+.+.......   ......+|.+.+++.++++.+|..++.+++.++.....
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            122347889999999999999999999999987533221   22346889999999999999999999999999864332


Q ss_pred             h---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          334 E---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       334 ~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      .   .....++|.+..++.++++.+|..++.+|+.++..-..   .......+|.|..++.++++++|..|..++..+..
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            2   23457899999999999999999999999999853222   12345688999999999999999999999998764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.65  E-value=3.4e-13  Score=124.76  Aligned_cols=345  Identities=14%  Similarity=0.094  Sum_probs=242.2

Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC-
Q 015150           24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-   99 (412)
Q Consensus        24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~-   99 (412)
                      +...-+|.+..++.++++.++..|+..+..++....+   .......+|.+.+++.+++..++..++.+|.+++..-+. 
T Consensus        45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            3444567777778888889999999999888864322   122344789999999999999999999999999852111 


Q ss_pred             ---CCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH-HHHHHhhhhhHHHhcc------------------CC
Q 015150          100 ---EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP-ELAIQHILPCVKELSS------------------DS  156 (412)
Q Consensus       100 ---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~------------------d~  156 (412)
                         .....-.+|.+.+++.+ .+.+++..+..+|..++..-.. ..+....+|.+.+++.                  ..
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~  204 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE  204 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence               11223578999999886 5788999999999998764322 2333456777777541                  13


Q ss_pred             cHHHHHHHHHHHHhcCcccC--hhHHH--HhhHHHHHHhhcc------cChHHHHHHHHHHHHHHHhhc-----------
Q 015150          157 SQHVRSALATVIMGMAPILG--KDATI--EQLLPIFLSLLKD------EFPDVRLNIISKLDQVNQVIG-----------  215 (412)
Q Consensus       157 ~~~vr~~~~~~l~~l~~~~~--~~~~~--~~l~~~l~~~l~d------~~~~vr~~~~~~l~~i~~~~~-----------  215 (412)
                      +..|+..++.+|.+++..-.  .....  ..+++.+..++++      .+......++.+|..+.....           
T Consensus       205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            57999999999999986431  11111  3455666666543      345667777777765543321           


Q ss_pred             ----------------hhh-HHhhHHHHHHHHhc-CCCchHHHHHHHHhhHHHhhhChh------h-HHHHHHHHHHHHh
Q 015150          216 ----------------IDL-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG------F-FDDKLGALCMQWL  270 (412)
Q Consensus       216 ----------------~~~-~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~------~-~~~~l~~~l~~~l  270 (412)
                                      .+. +....++.+..++. ..++.++..++.+|..++..-+..      . .....+|.+..+|
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL  364 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL  364 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence                            111 12345677777775 467899999999999887532211      1 1245689999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHhCh-hhhhhhhHHHHHhhhcCC--------chHHHHHHHHHHHHhccccchh---HHHH
Q 015150          271 KDKVYSIRDAAANNVKRLAEEFGP-DWAMQHIVPQVLEMINNP--------HYLYRMTILQAISLLAPVMGSE---ITCS  338 (412)
Q Consensus       271 ~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~~~~~--------~~~~r~~~~~~l~~l~~~~~~~---~~~~  338 (412)
                      ..++..++..|+.+|..+...-.. ..+....+|.|..++.+.        +..+...++.+++.++..-...   ....
T Consensus       365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~  444 (584)
T 3l6x_A          365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET  444 (584)
T ss_dssp             GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence            999999999999999999875433 334567889999998876        3567888999998886432221   2455


Q ss_pred             hhHHHHHhhcCCC--CchHHHHHHHHHHHHhh
Q 015150          339 QLLPVVINASKDR--VPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       339 ~il~~l~~~l~d~--~~~vR~~~~~~l~~l~~  368 (412)
                      ..+|.+..++.+.  .+.++..|+.+|..+..
T Consensus       445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            6899999999886  88999999999998864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.65  E-value=6.8e-14  Score=128.43  Aligned_cols=361  Identities=10%  Similarity=0.049  Sum_probs=230.5

Q ss_pred             CchhHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhh
Q 015150            1 MPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNF   74 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l   74 (412)
                      ++.+|..++.+|..++...+.   .......+|.+..+++++++.++..|+.+|..++...++   .......+|.+.++
T Consensus        15 ~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~l   94 (457)
T 1xm9_A           15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL   94 (457)
T ss_dssp             CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence            367899999999998854332   123455789999999999999999999999999975222   12234478899999


Q ss_pred             cc-CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhc--------CCChHHHHH--------HHHHHHHHHHHh
Q 015150           75 SQ-DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLL--------RDNEAEVRI--------AAAGKVTKICRI  135 (412)
Q Consensus        75 ~~-d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l--------~d~~~~vr~--------~a~~~l~~l~~~  135 (412)
                      +. ++++.++..++.+|..++.. ....  .....+|.+.+++        .++....|.        .|+.+|..++..
T Consensus        95 L~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~  173 (457)
T 1xm9_A           95 LRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA  173 (457)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS
T ss_pred             HhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC
Confidence            98 88999999999999999975 2211  1126789999999        445567777        899999999875


Q ss_pred             hCHH---HHHH--hhhhhHHHhccC------CcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHH
Q 015150          136 LNPE---LAIQ--HILPCVKELSSD------SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII  204 (412)
Q Consensus       136 ~~~~---~~~~--~~~~~l~~~~~d------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~  204 (412)
                        ++   ...+  .++|.+..++.+      .+..++..++..+..+......+.  ......+...+....  ......
T Consensus       174 --~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~  247 (457)
T 1xm9_A          174 --DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV--PTRYRQLEYNARNAY--TEKSST  247 (457)
T ss_dssp             --HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS--CCHHHHHHHTC------------
T ss_pred             --HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccC--cchhhhccccccccc--cccccc
Confidence              33   2222  467778888875      455667777777777764321100  000000111111000  000011


Q ss_pred             HHHHHHHH-----------------hhchh-hHHhhHHHHHHHHhcC-CCchHHHHHHHHhhHHHhhhChh-------hH
Q 015150          205 SKLDQVNQ-----------------VIGID-LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG-------FF  258 (412)
Q Consensus       205 ~~l~~i~~-----------------~~~~~-~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~-------~~  258 (412)
                      .+++....                 .-+.+ .+....++.+..++.+ +++.++..++.++..++..-+..       .+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v  327 (457)
T 1xm9_A          248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIG  327 (457)
T ss_dssp             ------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHH
T ss_pred             chhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHH
Confidence            11111100                 00111 1224456777776654 46899999999998887543221       11


Q ss_pred             -HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh-hhhhhhHHHHHhhhcCCc------hHHHHHHHHHHHHhccc
Q 015150          259 -DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPH------YLYRMTILQAISLLAPV  330 (412)
Q Consensus       259 -~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~~~~~~------~~~r~~~~~~l~~l~~~  330 (412)
                       ....+|.+.++|.+++..++..|+.+|..+...-... .+....+|.+.+++.+.+      ..+...++.+++.+...
T Consensus       328 ~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~  407 (457)
T 1xm9_A          328 LKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS  407 (457)
T ss_dssp             TTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhc
Confidence             1346799999999999999999999999997643222 234568899999888753      35777888888888643


Q ss_pred             cchh---HHHHhhHHHHHhhcCCC-CchHHHHHHHHHHHHhh
Q 015150          331 MGSE---ITCSQLLPVVINASKDR-VPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       331 ~~~~---~~~~~il~~l~~~l~d~-~~~vR~~~~~~l~~l~~  368 (412)
                      -+..   ......+|.+.+++.++ ++.+++.|+++|..++.
T Consensus       408 ~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          408 QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            3321   22345889999999988 89999999999998764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.64  E-value=2.9e-14  Score=120.51  Aligned_cols=225  Identities=12%  Similarity=0.084  Sum_probs=167.9

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC---CCCc
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPT  102 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~  102 (412)
                      +|.+..++.++++.+|..|+.++..++...+.   .......++.+.++++++++.+|..++.+|+.++....   ....
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            56667778888899999999999999876542   12334588999999999999999999999999985311   1112


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--
Q 015150          103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--  177 (412)
Q Consensus       103 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--  177 (412)
                      ....+|.+..+++++++.+|..++.+|..++...+.   .......+|.+.+++.++++.+|..++.+++.++.....  
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  163 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI  163 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            235799999999999999999999999999853221   123345789999999999999999999999999864322  


Q ss_pred             -hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150          178 -DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  253 (412)
Q Consensus       178 -~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  253 (412)
                       .......+|.+..++.++++.+|..++.+|..++..-..   .......++.+.+++.++++.+|..++.++..+....
T Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence             122346789999999998999999999999988753111   1112345677777777777777777777777666544

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.64  E-value=4.2e-13  Score=135.33  Aligned_cols=400  Identities=12%  Similarity=0.063  Sum_probs=251.7

Q ss_pred             chhHHHHHHHHHHHHHH----hhh---hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhh
Q 015150            2 PMVRRSAATNLGKFAAT----VEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF   74 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~----~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l   74 (412)
                      +.||..++..|.+.++.    +++   ..+.+.+++.+....++ ...+|...+.++..++.+..+  .++.+++.+.+.
T Consensus        54 ~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~  130 (971)
T 2x1g_F           54 QEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINT  130 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC--C------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHH
Confidence            57899999999998864    222   34567777777666544 367999999999999988555  567788888877


Q ss_pred             ccCC------ChHHHHHHHHHHHHHHHHhC-CC-C------------cccchHHHHHHhcCC---C-----hHHHHHHHH
Q 015150           75 SQDK------SWRVRYMVANQLYELCEAVG-PE-P------------TRSDVVPAYVRLLRD---N-----EAEVRIAAA  126 (412)
Q Consensus        75 ~~d~------~~~vR~~~~~~l~~l~~~~~-~~-~------------~~~~l~~~l~~~l~d---~-----~~~vr~~a~  126 (412)
                      ++.+      ++..+..++..|..+.+... .+ .            ..+.+++.+.+++.+   +     .+.++..++
T Consensus       131 ~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al  210 (971)
T 2x1g_F          131 FQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV  210 (971)
T ss_dssp             HHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence            7654      56788899999988885321 11 0            112455555555432   1     137999999


Q ss_pred             HHHHHHHH--hhCHHHHHHhhhhhHHHhc----------------cCCcHHHHHHHHHHHHhcCcccChh---HHHHhhH
Q 015150          127 GKVTKICR--ILNPELAIQHILPCVKELS----------------SDSSQHVRSALATVIMGMAPILGKD---ATIEQLL  185 (412)
Q Consensus       127 ~~l~~l~~--~~~~~~~~~~~~~~l~~~~----------------~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~  185 (412)
                      +++..+..  .++.. ....+++.+.. +                .+.++.+|..+++++..+...-...   .....++
T Consensus       211 ~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~  288 (971)
T 2x1g_F          211 KCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLI  288 (971)
T ss_dssp             HHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHH
T ss_pred             HHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHH
Confidence            99998887  35544 44556676665 3                2357799999999999887642211   1223444


Q ss_pred             HHHHHh-------hcccC---hHHHHHHHHHHHHHHHh----hc---------hhhHHhhHHHHHHHHhcC-----CCch
Q 015150          186 PIFLSL-------LKDEF---PDVRLNIISKLDQVNQV----IG---------IDLLSQSLLPAIVELAED-----RHWR  237 (412)
Q Consensus       186 ~~l~~~-------l~d~~---~~vr~~~~~~l~~i~~~----~~---------~~~~~~~~~~~l~~~~~d-----~~~~  237 (412)
                      |.+..+       ..+++   ++......+.+..++..    +.         .......+++.+..+...     .+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~  368 (971)
T 2x1g_F          289 KMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEES  368 (971)
T ss_dssp             HHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCT
T ss_pred             HHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchh
Confidence            544432       23334   26666666666666532    11         011123455666665533     4678


Q ss_pred             HHHHHHHHhhHHHhhh-C-------h------hhHHHHHHHHHHHHhc---Cc------------hhHHHHHHHHHHHHH
Q 015150          238 VRLAIIEYIPLLASQL-G-------V------GFFDDKLGALCMQWLK---DK------------VYSIRDAAANNVKRL  288 (412)
Q Consensus       238 vr~~~~~~l~~l~~~~-~-------~------~~~~~~l~~~l~~~l~---d~------------~~~vr~~a~~~l~~l  288 (412)
                      +...++..+..+++.. +       .      ..+...+++.++..+.   |.            ....|.++...+..+
T Consensus       369 v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~  448 (971)
T 2x1g_F          369 CSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYC  448 (971)
T ss_dssp             THHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHH
Confidence            8888888887776622 1       0      1122344555555442   11            124677888888888


Q ss_pred             HHHhChhhhhhhhHHHHHhhhcC-----CchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhc-CCCCchHHHHHH
Q 015150          289 AEEFGPDWAMQHIVPQVLEMINN-----PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINAS-KDRVPNIKFNVA  360 (412)
Q Consensus       289 ~~~~~~~~~~~~~l~~l~~~~~~-----~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l-~d~~~~vR~~~~  360 (412)
                      ...++ +...+.+++.+...+..     ++|+.|++++.+++.+++.+...  ...+.+++.+..+. .|+++.||..++
T Consensus       449 ~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~  527 (971)
T 2x1g_F          449 YDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTAL  527 (971)
T ss_dssp             HTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHH
T ss_pred             HHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHH
Confidence            77666 33445556665555543     68999999999999999887753  34556666444433 267899999999


Q ss_pred             HHHHHHhhhhchH-HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          361 KVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       361 ~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      ++++.++..+... .+...++|.+...+ |  +.|+..|+.|+..+++..+
T Consensus       528 ~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~  575 (971)
T 2x1g_F          528 ETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ  575 (971)
T ss_dssp             HHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH
Confidence            9999999887643 45567777777766 4  7899999999999987654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.63  E-value=6.2e-12  Score=126.90  Aligned_cols=400  Identities=11%  Similarity=0.060  Sum_probs=254.3

Q ss_pred             chhHHHHHHHHHHHHHHh----hh---hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhh
Q 015150            2 PMVRRSAATNLGKFAATV----EA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF   74 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~----~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l   74 (412)
                      +.||..++..|.+.++..    ++   ..+.+.+++.+....+ ....+|...+.++..++..--++. ++.+++.+.+.
T Consensus        72 ~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~-~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~  149 (963)
T 2x19_B           72 PEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFAS-GSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRL  149 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHH
Confidence            578999999999888642    22   3456667777665432 347799999999999998744443 67888888887


Q ss_pred             ccC-----CChHHHHHHHHHHHHHHHHhCCC---------------CcccchHHHHHHhcCCCh--HHHHHHHHHHHHHH
Q 015150           75 SQD-----KSWRVRYMVANQLYELCEAVGPE---------------PTRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKI  132 (412)
Q Consensus        75 ~~d-----~~~~vR~~~~~~l~~l~~~~~~~---------------~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l  132 (412)
                      +++     ++...+..++..|..+.+.....               ...+.+++.+..++.+.+  ..++..+++++..+
T Consensus       150 ~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~w  229 (963)
T 2x19_B          150 FQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSW  229 (963)
T ss_dssp             HCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHH
T ss_pred             HhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence            765     36678889999999888644211               112346666667666543  24888888888776


Q ss_pred             HHhhCHH-HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh---HHHHhhHHHHHHh-------hcccChHHHH
Q 015150          133 CRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSL-------LKDEFPDVRL  201 (412)
Q Consensus       133 ~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~-------l~d~~~~vr~  201 (412)
                      .. ++.. .....+++.+.+.+.  ++.+|..+++++..+.......   .....+++.+...       ..+.+.+...
T Consensus       230 i~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~  306 (963)
T 2x19_B          230 VQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSH  306 (963)
T ss_dssp             HT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHH
T ss_pred             Hc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHH
Confidence            65 2221 111346677766664  5778999999999887643211   1223333433322       2333445555


Q ss_pred             HHHHHHHHHHHhhch--------hhHHhhHHHHHHHHhcC-----CCchHHHHHHHHhhHHHhhhC----------hh--
Q 015150          202 NIISKLDQVNQVIGI--------DLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQLG----------VG--  256 (412)
Q Consensus       202 ~~~~~l~~i~~~~~~--------~~~~~~~~~~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~~----------~~--  256 (412)
                      ...+.+..++.....        ......++..+..+..+     .++.+...++..+..+++...          ..  
T Consensus       307 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~  386 (963)
T 2x19_B          307 GICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVY  386 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            555555555433111        11123455666666554     356666666666666655220          01  


Q ss_pred             -hHHHHHHHHHHHHhcCc----------h-----hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhh----cCCchHH
Q 015150          257 -FFDDKLGALCMQWLKDK----------V-----YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI----NNPHYLY  316 (412)
Q Consensus       257 -~~~~~l~~~l~~~l~d~----------~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~----~~~~~~~  316 (412)
                       .+...+++.++..+.-+          +     .+.|.++...+..+....+.+ ..+.+++.+...+    .+.+|+.
T Consensus       387 ~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~  465 (963)
T 2x19_B          387 RPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQH  465 (963)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHH
Confidence             12233455555544211          0     124677777777777766644 3344555665555    5678999


Q ss_pred             HHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH-HHHhhHHHHHHhhcCCCCcc
Q 015150          317 RMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVD  393 (412)
Q Consensus       317 r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~  393 (412)
                      |++++.+++.+++.+..+  .+...+++.+.. +.++++.||..++++++.+...+... .+...+++.+...+.|  +.
T Consensus       466 ~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~  542 (963)
T 2x19_B          466 TEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PE  542 (963)
T ss_dssp             HHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GG
T ss_pred             HHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--ch
Confidence            999999999999887653  345566665444 45568889999999999998876542 4667788888877765  79


Q ss_pred             HHHHHHHHHHHhHHhhh
Q 015150          394 VRFFATQALQSKDQVMM  410 (412)
Q Consensus       394 vr~~a~~al~~~~~~~~  410 (412)
                      |+..|+.++..+++..+
T Consensus       543 V~~~A~~al~~l~~~~~  559 (963)
T 2x19_B          543 LSVSSVSTLKKICRECK  559 (963)
T ss_dssp             GHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999987654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.62  E-value=1.5e-13  Score=138.53  Aligned_cols=401  Identities=9%  Similarity=0.058  Sum_probs=250.9

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC------chHHHHHHHHhHHHHhhcc---Cch-----------
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD------QDSVRLLAVEGCGALGKLL---EPQ-----------   61 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~------~~~~r~~a~~~l~~i~~~~---~~~-----------   61 (412)
                      +.||.+++.++..+++...+  -|+.+++.+..+++++      ++..+..++..+..+.+..   ...           
T Consensus        99 ~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~  176 (971)
T 2x1g_F           99 KIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA  176 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH
Confidence            56899999999999987654  5777888887777664      5667888888888777531   110           


Q ss_pred             hhhhhhHHHHHhhccC---C-----ChHHHHHHHHHHHHHHHH--hCCCCcccchHHHHHHhc----------------C
Q 015150           62 DCVAHILPVIVNFSQD---K-----SWRVRYMVANQLYELCEA--VGPEPTRSDVVPAYVRLL----------------R  115 (412)
Q Consensus        62 ~~~~~l~~~l~~l~~d---~-----~~~vR~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l----------------~  115 (412)
                      ...+.+++++.+++++   +     ++.++..+++++..+...  .+.. ....+++.+.. +                .
T Consensus       177 ~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~  254 (971)
T 2x1g_F          177 KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMT  254 (971)
T ss_dssp             TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCC
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccC
Confidence            1123455555555432   1     137999999999988773  3333 44567777766 4                1


Q ss_pred             CChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHH-------hccCCc---HHHHHHHHHHHHhcCcc----cC--
Q 015150          116 DNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKE-------LSSDSS---QHVRSALATVIMGMAPI----LG--  176 (412)
Q Consensus       116 d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~-------~~~d~~---~~vr~~~~~~l~~l~~~----~~--  176 (412)
                      ++++.+|..|+.++..+......   ......++|.+..       ...+.+   ......+++.+..+++.    +.  
T Consensus       255 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          255 ADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            25689999999999998874221   1222333444332       223334   25666677777666532    11  


Q ss_pred             -------hhHHHHhhHHHHHHhhc-----ccChHHHHHHHHHHHHHHHhh-c-------h---h---hHHhhHHHHHHHH
Q 015150          177 -------KDATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVI-G-------I---D---LLSQSLLPAIVEL  230 (412)
Q Consensus       177 -------~~~~~~~l~~~l~~~l~-----d~~~~vr~~~~~~l~~i~~~~-~-------~---~---~~~~~~~~~l~~~  230 (412)
                             .......+++.+..+..     ..++++...++..+..+++.. +       .   .   .....+++.+...
T Consensus       335 ~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~  414 (971)
T 2x1g_F          335 ITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRK  414 (971)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence                   01112344555555442     246788888888887776622 1       0   0   1122333443333


Q ss_pred             hc---CC---Cc---------hHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHH
Q 015150          231 AE---DR---HW---------RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-----KVYSIRDAAANNVKRLAE  290 (412)
Q Consensus       231 ~~---d~---~~---------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~  290 (412)
                      +.   |.   +|         ..|..+...+..++...|. ...+.+.+.+...+..     .+|..|++++.+++.+.+
T Consensus       415 ~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae  493 (971)
T 2x1g_F          415 SEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAE  493 (971)
T ss_dssp             TSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTT
T ss_pred             hcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHh
Confidence            31   11   11         3677788888888887773 4455567776666654     688899999999999887


Q ss_pred             HhChhh--hhhhhHHHHHhhh-cCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          291 EFGPDW--AMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       291 ~~~~~~--~~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                      ......  ....+++.+..+. .|++..+|.+++++++++++.++.. .+...++|.++..+ |  +.|+..++.++..+
T Consensus       494 ~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l  570 (971)
T 2x1g_F          494 HFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKEL  570 (971)
T ss_dssp             C------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHH
T ss_pred             hcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHH
Confidence            664321  2234455333333 2567899999999999999887743 47788899999888 4  78999999999999


Q ss_pred             hhhhchH--HHHhhHHHHHHhhcCC--CCccHHHHHHHHHHHhHHhhh
Q 015150          367 IPIVDQS--VVEKSIRPCLVELSED--PDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       367 ~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~~~  410 (412)
                      .+..+..  .+.+.++..+..+++.  .+.+.+..+.++++.++..++
T Consensus       571 ~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~  618 (971)
T 2x1g_F          571 CRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR  618 (971)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence            9776553  3445666666665555  467899999999999987654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.61  E-value=2.2e-11  Score=123.53  Aligned_cols=397  Identities=11%  Similarity=0.094  Sum_probs=240.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhc----cCch---hhhhhhHHHHHhhc
Q 015150            3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL----LEPQ---DCVAHILPVIVNFS   75 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~----~~~~---~~~~~l~~~l~~l~   75 (412)
                      ..|++|-+.|..+-+.   +..+..+..++..   +.++.+|..|+..+.+....    ++++   ..+..++..+.+..
T Consensus        31 ~~r~~Ae~~L~~~~~~---p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~  104 (1049)
T 3m1i_C           31 VQQKQAQEILTKFQDN---PDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMC  104 (1049)
T ss_dssp             HHHHHHHHHHHHHHHS---TTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC---chHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhC
Confidence            3577777777665432   2345555555433   55778999999999887753    3332   23444555555544


Q ss_pred             cCC-----ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH------------
Q 015150           76 QDK-----SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------------  138 (412)
Q Consensus        76 ~d~-----~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------------  138 (412)
                      .++     +..+|...+.+++.++..... ..|+++++.+.+.++ .++..+..++..|..+.+.+..            
T Consensus       105 ~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~  182 (1049)
T 3m1i_C          105 QDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKAL  182 (1049)
T ss_dssp             HCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHH
T ss_pred             CccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHH
Confidence            333     478999999999999987655 447889999998886 4556677778888777653320            


Q ss_pred             ---HHH---HHhhhhhHHHhcc-CCcHHHHHHHHHHHHhcCcccChhH-HHHhhHHHHHH-hhcccChHHHHHHHHHHHH
Q 015150          139 ---ELA---IQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQ  209 (412)
Q Consensus       139 ---~~~---~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~  209 (412)
                         +.+   ...+++.+...++ ..+..++..+++++.......+... ....+++.+.+ ++.  ++++|..++.++..
T Consensus       183 ~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~  260 (1049)
T 3m1i_C          183 HLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTE  260 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHH
Confidence               111   2223344444443 2356677777777766554433221 11223333221 111  23333333333322


Q ss_pred             HHHh---------------------------------------------------------------hc--------hhh
Q 015150          210 VNQV---------------------------------------------------------------IG--------IDL  218 (412)
Q Consensus       210 i~~~---------------------------------------------------------------~~--------~~~  218 (412)
                      +...                                                               ..        ...
T Consensus       261 i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  340 (1049)
T 3m1i_C          261 VSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE  340 (1049)
T ss_dssp             HHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred             HHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH
Confidence            2211                                                               00        000


Q ss_pred             HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-----Chh---hHHHHHHHHHHHHhcCc-----------------
Q 015150          219 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-----GVG---FFDDKLGALCMQWLKDK-----------------  273 (412)
Q Consensus       219 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~~~---~~~~~l~~~l~~~l~d~-----------------  273 (412)
                      ....+++.+......++..+...+++.+..+.+.+     ...   .+...+++.++..+.-+                 
T Consensus       341 ~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~  420 (1049)
T 3m1i_C          341 LLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREF  420 (1049)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECS
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhh
Confidence            11233455555555667777777777777776622     111   23344566666544110                 


Q ss_pred             -----hhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc--CCchHHHHHHHHHHHHhccccchh---HHHHhhHHH
Q 015150          274 -----VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPV  343 (412)
Q Consensus       274 -----~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~  343 (412)
                           .+..|.++...|..+.. .+.+.....+.+.+.+.+.  ..+|+.|++++.+++.+++.++..   .+...+++.
T Consensus       421 ~~d~d~~~~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~  499 (1049)
T 3m1i_C          421 VKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD  499 (1049)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHH
Confidence                 12456667777777764 3444444556666666664  467999999999999999877654   346667777


Q ss_pred             HHhhcC-----CCCchHHHHHHHHHHHHhhhhch-HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          344 VINASK-----DRVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       344 l~~~l~-----d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      +..+..     |+.+.||..++.+++.+...+.. ..+...+++.+...+.|+++.||..|+.++..+++..+
T Consensus       500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            766432     45667777899999988876544 24556778888888889999999999999999998654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.61  E-value=4.4e-12  Score=126.15  Aligned_cols=406  Identities=11%  Similarity=0.079  Sum_probs=258.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHh
Q 015150            2 PMVRRSAATNLGKFAATVEAA-------HLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN   73 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~-------~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~   73 (412)
                      +.||.-++..|...++.++.+       .+.+.+++.+..... ++...+|...+.++..++.+.-++ .++..++-+.+
T Consensus        57 ~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~  135 (980)
T 3ibv_A           57 PSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQG  135 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHH
Confidence            578888888888888755433       345566666655321 234568888888999888875444 45666666666


Q ss_pred             hccCCCh-HHHHHHHHHHHHHHHHhCCCCc---------------------ccchHHHHHHhc----CCChHHHHHHHHH
Q 015150           74 FSQDKSW-RVRYMVANQLYELCEAVGPEPT---------------------RSDVVPAYVRLL----RDNEAEVRIAAAG  127 (412)
Q Consensus        74 l~~d~~~-~vR~~~~~~l~~l~~~~~~~~~---------------------~~~l~~~l~~~l----~d~~~~vr~~a~~  127 (412)
                      +++.++. ..-...++.|..+.+.+.+...                     .+.+.+.+...+    ...++.++..+++
T Consensus       136 ~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~  215 (980)
T 3ibv_A          136 VIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ  215 (980)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            6554333 3444556666666565433210                     011233333333    3356789999999


Q ss_pred             HHHHHHHhhCHHHHH-HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH------HHHHhhc-ccChHH
Q 015150          128 KVTKICRILNPELAI-QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP------IFLSLLK-DEFPDV  199 (412)
Q Consensus       128 ~l~~l~~~~~~~~~~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~------~l~~~l~-d~~~~v  199 (412)
                      ++..+...++...+. ..+++.+.+++.+  +.+|.++++++..+...-.+......++.      .+..+.. +++.++
T Consensus       216 ~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~  293 (980)
T 3ibv_A          216 VYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNF  293 (980)
T ss_dssp             HHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHH
T ss_pred             HHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHH
Confidence            999998887776443 4578888888876  78999999999998765433222222222      2222222 456677


Q ss_pred             HHHHHHHHHHHHHhh-----ch-----h------hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh---Ch-----
Q 015150          200 RLNIISKLDQVNQVI-----GI-----D------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-----  255 (412)
Q Consensus       200 r~~~~~~l~~i~~~~-----~~-----~------~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~-----  255 (412)
                      .....+.+..++..+     .+     +      .....+++.+..+..++++.+-..+...+..+....   +.     
T Consensus       294 ~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~  373 (980)
T 3ibv_A          294 DEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELS  373 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence            665555544433221     11     0      223567888899999988888777766666655432   11     


Q ss_pred             h---hHHHHHHHHHHHHhc-------Cc---------hhHHHHHHHHHHHHHHHHhChhhhhh----hhHHHHHhhhc--
Q 015150          256 G---FFDDKLGALCMQWLK-------DK---------VYSIRDAAANNVKRLAEEFGPDWAMQ----HIVPQVLEMIN--  310 (412)
Q Consensus       256 ~---~~~~~l~~~l~~~l~-------d~---------~~~vr~~a~~~l~~l~~~~~~~~~~~----~~l~~l~~~~~--  310 (412)
                      +   .+...+++.+..-+.       |.         -.+.|.... .+-..+..++++...+    .+.+.+.+.+.  
T Consensus       374 ~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~  452 (980)
T 3ibv_A          374 ASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLS  452 (980)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Confidence            1   123334444444332       11         123666666 7777777788776665    55555655552  


Q ss_pred             -CCchHHHHHHHHHHHHhccccchh--------HHHHhhHHHHHhhcC-----CCCchHHHHHHHHHHHHhhhhchH-HH
Q 015150          311 -NPHYLYRMTILQAISLLAPVMGSE--------ITCSQLLPVVINASK-----DRVPNIKFNVAKVLQSLIPIVDQS-VV  375 (412)
Q Consensus       311 -~~~~~~r~~~~~~l~~l~~~~~~~--------~~~~~il~~l~~~l~-----d~~~~vR~~~~~~l~~l~~~~~~~-~~  375 (412)
                       +.+|+.+++++.+++.+++.+...        ...+.+++.+..+++     +++|.||..++.+++..+..+... .+
T Consensus       453 ~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~  532 (980)
T 3ibv_A          453 PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAA  532 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTT
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchh
Confidence             456999999999999999887642        234457777777755     889999999999999999887642 23


Q ss_pred             HhhHHHHHHh--hcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          376 EKSIRPCLVE--LSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       376 ~~~i~~~l~~--l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      .+.+++.+..  .+.+++..||.+|+.++..+++..+.
T Consensus       533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            3455555555  56689999999999999999987653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.61  E-value=4.4e-14  Score=119.40  Aligned_cols=229  Identities=15%  Similarity=0.141  Sum_probs=146.6

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHh
Q 015150          104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ  183 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  183 (412)
                      ..-++.+.+.++++++++|..|+.+|..+... .++.. ..                                  .....
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~-~~----------------------------------~~~~g   54 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQI-QA----------------------------------VIDAG   54 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHH-HH----------------------------------HHHTT
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchH-HH----------------------------------HHHcC
Confidence            34566777777777777777777777655443 11111 10                                  01123


Q ss_pred             hHHHHHHhhcccChHHHHHHHHHHHHHHHhhc---hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh---h
Q 015150          184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---F  257 (412)
Q Consensus       184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~  257 (412)
                      .+|.+.++++++++++|..++.+|..++....   ........+|.+..+++++++.+|..++.++..++......   .
T Consensus        55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  134 (252)
T 4db8_A           55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV  134 (252)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHH
Confidence            45555555655556666666666655553211   11112335666667777777777777777766665432211   1


Q ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh
Q 015150          258 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       258 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      .....+|.+.+++.++++.+|..|+.+|+.+......   ......++|.+.+++.+++..+|..++.+++.++......
T Consensus       135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  214 (252)
T 4db8_A          135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ  214 (252)
T ss_dssp             HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence            2234678888888888888999998888888752211   1123567889999999999999999999999997432221


Q ss_pred             ---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhh
Q 015150          335 ---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       335 ---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~  368 (412)
                         ......+|.+.+++.++++.+|..++.+|+.++.
T Consensus       215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence               2344588999999999999999999999988763

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.60  E-value=3e-12  Score=129.21  Aligned_cols=401  Identities=11%  Similarity=0.097  Sum_probs=256.6

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccC-----CchHHHHHHHHhHHHHhhccCc---------------h
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-----DQDSVRLLAVEGCGALGKLLEP---------------Q   61 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~a~~~l~~i~~~~~~---------------~   61 (412)
                      +.||.+.+.++..+++...++. |+.+++.+..++++     +++..+..++..+..+.+....               .
T Consensus       117 ~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~  195 (963)
T 2x19_B          117 KIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLA  195 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSG
T ss_pred             HHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHH
Confidence            5689999999999998754444 77888888777765     3555778888888887753211               1


Q ss_pred             hhhhhhHHHHHhhccCCC--hHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH
Q 015150           62 DCVAHILPVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP  138 (412)
Q Consensus        62 ~~~~~l~~~l~~l~~d~~--~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  138 (412)
                      ...+.+++++.+.+++.+  ..++..+++++..... .+... ....+++.+.+.+.  ++.+|..|++++..+......
T Consensus       196 ~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~  272 (963)
T 2x19_B          196 VECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDA  272 (963)
T ss_dssp             GGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTG
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccccc
Confidence            223456777777665532  2488888998877765 33322 22568888888886  467999999999998764321


Q ss_pred             ---HHHHHhhhhhHHH-------hccCCcHHHHHHHHHHHHhcCcccCh--------hHHHHhhHHHHHHhhcc-----c
Q 015150          139 ---ELAIQHILPCVKE-------LSSDSSQHVRSALATVIMGMAPILGK--------DATIEQLLPIFLSLLKD-----E  195 (412)
Q Consensus       139 ---~~~~~~~~~~l~~-------~~~d~~~~vr~~~~~~l~~l~~~~~~--------~~~~~~l~~~l~~~l~d-----~  195 (412)
                         ......+++.+..       ...+.+.......++.+..++.....        ......++..+.....+     .
T Consensus       273 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~  352 (963)
T 2x19_B          273 QRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPV  352 (963)
T ss_dssp             GGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTT
T ss_pred             ccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCc
Confidence               1222333333332       22333445555666766665532111        11123445555555553     3


Q ss_pred             ChHHHHHHHHHHHHHHHhhc----------hh---hHHhhHHHHHHHHhcCC--------------Cc-hHHHHHHHHhh
Q 015150          196 FPDVRLNIISKLDQVNQVIG----------ID---LLSQSLLPAIVELAEDR--------------HW-RVRLAIIEYIP  247 (412)
Q Consensus       196 ~~~vr~~~~~~l~~i~~~~~----------~~---~~~~~~~~~l~~~~~d~--------------~~-~vr~~~~~~l~  247 (412)
                      ++.+...++..+..+++...          ..   .....+++.+...+.-+              ++ ..|..+...+.
T Consensus       353 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~  432 (963)
T 2x19_B          353 NETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLM  432 (963)
T ss_dssp             TCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHH
Confidence            55666666666666655220          00   11123333333322111              11 23677777888


Q ss_pred             HHHhhhChhhHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHhChh--hhhhhhHHHHHhhhcCCchHHHHHHH
Q 015150          248 LLASQLGVGFFDDKLGALCMQWL----KDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTIL  321 (412)
Q Consensus       248 ~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~  321 (412)
                      .++...|.. ..+.+.+.+...+    .+.+|..+++++.+++.+.+.+..+  .+...+++.+..+ .+++..+|.+++
T Consensus       433 ~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~  510 (963)
T 2x19_B          433 YVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVM  510 (963)
T ss_dssp             HHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHH
T ss_pred             HHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence            888777743 4455667776777    6788999999999999998876532  2233455544333 335778999999


Q ss_pred             HHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCC--CCccHHH
Q 015150          322 QAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED--PDVDVRF  396 (412)
Q Consensus       322 ~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~  396 (412)
                      .+++++++.++.. .+.+.+++.++..+.+  +.|+..|+.++..++...+..  .+.+.++..+..++..  .+.+.|.
T Consensus       511 ~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~  588 (963)
T 2x19_B          511 FTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCM  588 (963)
T ss_dssp             HHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHH
Confidence            9999999876643 5788899999999976  899999999999998765543  3445666666665543  4568999


Q ss_pred             HHHHHHHHhHHhhh
Q 015150          397 FATQALQSKDQVMM  410 (412)
Q Consensus       397 ~a~~al~~~~~~~~  410 (412)
                      .+.++++.++..++
T Consensus       589 ~~~eai~~i~~~~~  602 (963)
T 2x19_B          589 WLMQALGFLLSALQ  602 (963)
T ss_dssp             HHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999887654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.58  E-value=4.7e-12  Score=128.41  Aligned_cols=404  Identities=7%  Similarity=0.002  Sum_probs=258.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccC---ch------------hh---
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE---PQ------------DC---   63 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~---~~------------~~---   63 (412)
                      +.||.+++.++..+++...+ .-|+.+++.+...++ .++..+..++.++..+.+...   .+            ..   
T Consensus       114 ~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~  191 (1049)
T 3m1i_C          114 KNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE  191 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence            56788999999999887444 347788888877776 445567777777777765432   11            01   


Q ss_pred             hhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHH-hcCCChHHHHHHHHHHHHHHHHhh-CHH
Q 015150           64 VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVR-LLRDNEAEVRIAAAGKVTKICRIL-NPE  139 (412)
Q Consensus        64 ~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~-~~~  139 (412)
                      .+.++..+.+.+++ ++..++..+++++..+....+... ....+++.+.+ ++.  ++.+|..|++++..+...- ++.
T Consensus       192 ~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~  269 (1049)
T 3m1i_C          192 FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQD  269 (1049)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcc
Confidence            22244555555443 467899999999988765443221 22456776663 343  5889999999999887652 221


Q ss_pred             -----HHH----HhhhhhHHH--------------hccCCcHHHHHHHHHHHHhcCccc------C--hhHHHHhhHHHH
Q 015150          140 -----LAI----QHILPCVKE--------------LSSDSSQHVRSALATVIMGMAPIL------G--KDATIEQLLPIF  188 (412)
Q Consensus       140 -----~~~----~~~~~~l~~--------------~~~d~~~~vr~~~~~~l~~l~~~~------~--~~~~~~~l~~~l  188 (412)
                           ...    ..++..+..              ...|.++.+....++.+..++...      +  .......+++.+
T Consensus       270 ~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  349 (1049)
T 3m1i_C          270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL  349 (1049)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence                 111    112221111              123456666666666665544321      0  011234566777


Q ss_pred             HHhhcccChHHHHHHHHHHHHHHHhh----c-hh---hHHhhHHHHHHHHh---cCCC-------------------chH
Q 015150          189 LSLLKDEFPDVRLNIISKLDQVNQVI----G-ID---LLSQSLLPAIVELA---EDRH-------------------WRV  238 (412)
Q Consensus       189 ~~~l~d~~~~vr~~~~~~l~~i~~~~----~-~~---~~~~~~~~~l~~~~---~d~~-------------------~~v  238 (412)
                      ......++.+++..++..+..+.+.+    . ..   .....+++.+...+   +|..                   |..
T Consensus       350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~  429 (1049)
T 3m1i_C          350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1049)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence            77767778899999988888887632    1 11   12233444444332   1111                   244


Q ss_pred             HHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhc---
Q 015150          239 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMIN---  310 (412)
Q Consensus       239 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~---  310 (412)
                      |..+...+..++... .....+.+.+.+.+.+.  ..+|..|++++.+++.+.+.++..   .+...+++.+..+..   
T Consensus       430 ~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~  508 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKR  508 (1049)
T ss_dssp             HHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhc
Confidence            666777777777544 34455666777777665  467899999999999887665543   223455555555332   


Q ss_pred             --CCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----------HHHh
Q 015150          311 --NPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----------VVEK  377 (412)
Q Consensus       311 --~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----------~~~~  377 (412)
                        ++++.+|..++++++++++.+... .+...+++.++..+.|+++.||..|+.++..++...+..          .+.+
T Consensus       509 ~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~  588 (1049)
T 3m1i_C          509 GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ  588 (1049)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence              345667778999999998766543 467788999999999999999999999999998876543          2345


Q ss_pred             hHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          378 SIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       378 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      .++..+..+..+.+.+-+....++++.++...|
T Consensus       589 ~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            566666666777777777888899998887665

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.57  E-value=6.7e-16  Score=126.89  Aligned_cols=186  Identities=21%  Similarity=0.243  Sum_probs=107.5

Q ss_pred             HHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH
Q 015150           33 EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR  112 (412)
Q Consensus        33 ~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  112 (412)
                      ..+++|+++.+|..++..+       +.        ..+..+.+|+++.||..++..++            .   +.+..
T Consensus        56 ~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~------------~---~~L~~  105 (244)
T 1lrv_A           56 VQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLP------------R---EQLSA  105 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSC------------S---GGGGG
T ss_pred             HHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCC------------H---HHHHH
Confidence            3456777777777666543       11        12556677777777777775421            0   34556


Q ss_pred             hcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh
Q 015150          113 LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL  192 (412)
Q Consensus       113 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  192 (412)
                      +++|+++.||..+...+       +        .+.+..+++|+++.||..++..+       +.        +.+..++
T Consensus       106 ll~D~d~~VR~~aA~~l-------~--------~~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~  155 (244)
T 1lrv_A          106 LMFDEDREVRITVADRL-------P--------LEQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  155 (244)
T ss_dssp             TTTCSCHHHHHHHHHHS-------C--------TGGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence            67777777777766642       1        13345556777777777776531       11        2334566


Q ss_pred             cccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC
Q 015150          193 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD  272 (412)
Q Consensus       193 ~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  272 (412)
                      +|+++.||..++..+       +.        +.+..+++|++|.||.+++..+       +.        +.+..++.|
T Consensus       156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D  205 (244)
T 1lrv_A          156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD  205 (244)
T ss_dssp             TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcC
Confidence            677777777766641       11        2233456777777777766553       11        234555677


Q ss_pred             chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150          273 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI  324 (412)
Q Consensus       273 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l  324 (412)
                      ++|.||.+++.+++               .+.+..+ +|++|.||.++.+.+
T Consensus       206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence            77777777766643               1344444 666777777666544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.57  E-value=1.2e-12  Score=127.23  Aligned_cols=262  Identities=15%  Similarity=0.195  Sum_probs=211.1

Q ss_pred             hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh----hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhH
Q 015150          144 HILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  219 (412)
Q Consensus       144 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~  219 (412)
                      .++..+.+.+.+....  ..++..+..++...+.    +.+.-.++|.+.....|....||.+|..+...+...+.++..
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~  131 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI  131 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            4667777777776544  7788888888866633    344445778888999999999999999999999999998877


Q ss_pred             HhhHHHHHHHHhcCC-CchHHHHHHHHhhHHHhhhChh--hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh
Q 015150          220 SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW  296 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  296 (412)
                       ..++|.+...+.+. .|+.+.+++..+..+++.....  ...+.++|.+...+.|..++|..+|..++..++..+++..
T Consensus       132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d  210 (986)
T 2iw3_A          132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD  210 (986)
T ss_dssp             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred             -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence             88899999888765 6999999999999999876332  2357799999999999999999999999999999888765


Q ss_pred             hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch-hHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--
Q 015150          297 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  373 (412)
Q Consensus       297 ~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--  373 (412)
                      + ...+|.+.+.+.+|+. + ..+++.|+...-.-.. .+...-+.|.|...|+++...+++.++-.+.++++-+.+.  
T Consensus       211 ~-~~~~~~~~~~~~~p~~-~-~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~  287 (986)
T 2iw3_A          211 I-ERFIPSLIQCIADPTE-V-PETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV  287 (986)
T ss_dssp             T-GGGHHHHHHHHHCTTH-H-HHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             h-hhhHHHHHHHhcChhh-h-HHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH
Confidence            4 5588999999999864 2 2335555543321111 2457789999999999999999999999999999888764  


Q ss_pred             --HHHhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          374 --VVEKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       374 --~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                        .|.+.++|.+++ .-+-.++++|..+.+|+.++....+.
T Consensus       288 ~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          288 IAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence              577889999998 45668999999999999999887654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.56  E-value=1e-11  Score=119.22  Aligned_cols=331  Identities=14%  Similarity=0.065  Sum_probs=222.2

Q ss_pred             hHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc---CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC
Q 015150           41 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN  117 (412)
Q Consensus        41 ~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~---d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  117 (412)
                      +..+..|+..+|.+......     ..+..+.+++.   ..++.+|..++.+||-+....+.     +.+..+...+.+.
T Consensus       372 ~~~k~sA~aSLGlIh~g~~~-----~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~  441 (963)
T 4ady_A          372 NWAKFTATASLGVIHKGNLL-----EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVEN  441 (963)
T ss_dssp             THHHHHHHHHHHHHTSSCTT-----THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhccCchH-----HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCc
Confidence            34577888888888776433     24555666654   56789999999999998765442     3566666666544


Q ss_pred             h--------HHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHH
Q 015150          118 E--------AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFL  189 (412)
Q Consensus       118 ~--------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  189 (412)
                      +        +.+|..|+..||.+.-..+.+.    +++.+...+.|.+..+|..++.++|.+.---|.+...+.++..+ 
T Consensus       442 ~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~-  516 (963)
T 4ady_A          442 SGTSGDEDVDVLLHGASLGIGLAAMGSANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS-  516 (963)
T ss_dssp             SSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-
T ss_pred             cccccccccHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH-
Confidence            3        7899999999988644334443    44556666666677788888888887633233333344444433 


Q ss_pred             HhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHH
Q 015150          190 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  269 (412)
Q Consensus       190 ~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  269 (412)
                        ..+.+..+|..++-+|+.+.  +|...-.+.+   +..+..+.+|-+|..++.+++.-.-..|.....+.   ++..+
T Consensus       517 --~e~~~e~vrR~aalgLGll~--~g~~e~~~~l---i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~---LL~~~  586 (963)
T 4ady_A          517 --QETQHGNITRGLAVGLALIN--YGRQELADDL---ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKR---LLHVA  586 (963)
T ss_dssp             --HHCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH---HHHHH
T ss_pred             --hccCcHHHHHHHHHHHHhhh--CCChHHHHHH---HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH---HHHHh
Confidence              34567789988888888773  3332221222   23344578999999988887765555565433333   33444


Q ss_pred             hcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHh-hhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhc
Q 015150          270 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS  348 (412)
Q Consensus       270 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l  348 (412)
                      ..|.+..||++|+.+|+.+.-  |.+    ...+.+.. +..+.++.+|..+..++|.++...+.    ..++..|..+.
T Consensus       587 ~~d~~d~VRraAViaLGlI~~--g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~  656 (963)
T 4ady_A          587 VSDSNDDVRRAAVIALGFVLL--RDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLT  656 (963)
T ss_dssp             HHCSCHHHHHHHHHHHHHHTS--SSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHhhcc--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHc
Confidence            568889999999999997652  322    23444544 44577899999999999999865553    45677778888


Q ss_pred             CCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCC--CCccHHHHHHHHHHHhH
Q 015150          349 KDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED--PDVDVRFFATQALQSKD  406 (412)
Q Consensus       349 ~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~  406 (412)
                      +|++..||..|+.+|+.+...-.+.  .....++..+.....|  .|..+|..+.-|.|.+.
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            9999999999999999997543332  1223445555554444  66778999988888764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.55  E-value=2.6e-12  Score=116.25  Aligned_cols=246  Identities=12%  Similarity=0.004  Sum_probs=175.8

Q ss_pred             HHHHHHHhcCcccC--hhHHHHhhHHHHHHhhc-----------ccChHHHHHHHHHHHHHHHhhch--hhH--HhhHHH
Q 015150          163 ALATVIMGMAPILG--KDATIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQVIGI--DLL--SQSLLP  225 (412)
Q Consensus       163 ~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~-----------d~~~~vr~~~~~~l~~i~~~~~~--~~~--~~~~~~  225 (412)
                      .+++++++++..-.  ........++.+..++.           +.++.++..++.+|..++..-..  ..+  ....+|
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            78888888864311  11112356677777763           13467899999999998854321  122  245689


Q ss_pred             HHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hh-HHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHh-C--hhhh
Q 015150          226 AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEF-G--PDWA  297 (412)
Q Consensus       226 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~--~~~~  297 (412)
                      .+..++.+++..++..++.+|..++..-+.   .. .....+|.++.+ +...+..+++.|+.++..+.... +  ....
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            999999999999999999999888753111   11 223467888886 56677889999999998887622 1  1222


Q ss_pred             -hhhhHHHHHhhhcCCch----HHHHHHHHHHHHhccc--cchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          298 -MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       298 -~~~~l~~l~~~~~~~~~----~~r~~~~~~l~~l~~~--~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                       ....+|.|.+++.+.+.    .++..++.++..++..  .+.+    ......+|.++.++.+.+..++..++.+|..+
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL  406 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             34688999998886543    4888888999888742  1222    12345789999999999999999999999999


Q ss_pred             hhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          367 IPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       367 ~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      +..-..   .......+|.|..++..++.++|..|+.||..+...
T Consensus       407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            742111   134467899999999999999999999999998753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.55  E-value=5.2e-12  Score=114.23  Aligned_cols=337  Identities=12%  Similarity=0.064  Sum_probs=219.8

Q ss_pred             HHHHHhccCCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCC------------ChHHHHHHHHHHHHHHH
Q 015150           30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDK------------SWRVRYMVANQLYELCE   95 (412)
Q Consensus        30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~------------~~~vR~~~~~~l~~l~~   95 (412)
                      +-+..++.+.++.   ...+.|..+....+.  .....-.+|.+.++++..            ++.+|..++.+|.+|+.
T Consensus        35 ~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~  111 (458)
T 3nmz_A           35 YSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH  111 (458)
T ss_dssp             ----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc
Confidence            4444445444433   134455555554332  124556888888888753            26999999999999998


Q ss_pred             HhCCCCcc---cchH----------HHHHHhcCCCh--HH-----HHH-------HHHHHHHHHHHhhC--HHHHHHhhh
Q 015150           96 AVGPEPTR---SDVV----------PAYVRLLRDNE--AE-----VRI-------AAAGKVTKICRILN--PELAIQHIL  146 (412)
Q Consensus        96 ~~~~~~~~---~~l~----------~~l~~~l~d~~--~~-----vr~-------~a~~~l~~l~~~~~--~~~~~~~~~  146 (412)
                      .-++....   .-++          +.+.+++..+.  .+     ||.       .|+.+|++++..-.  ........+
T Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l  191 (458)
T 3nmz_A          112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGL  191 (458)
T ss_dssp             HSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHH
T ss_pred             cCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence            65443311   1122          33444444321  11     555       78888888754311  112234467


Q ss_pred             hhHHHhcc-----------CCcHHHHHHHHHHHHhcCcccC--hhHH--HHhhHHHHHHhhcccChHHHHHHHHHHHHHH
Q 015150          147 PCVKELSS-----------DSSQHVRSALATVIMGMAPILG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  211 (412)
Q Consensus       147 ~~l~~~~~-----------d~~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~  211 (412)
                      +.+..++.           +.++.++..+++++..++..-.  +..+  ....+|.+..++..++++++..++.+|..+.
T Consensus       192 ~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs  271 (458)
T 3nmz_A          192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS  271 (458)
T ss_dssp             HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            77777662           1357889999999999885322  1122  2456899999999999999999999999886


Q ss_pred             Hhhch---hh-HHhhHHHHHHHH-hcCCCchHHHHHHHHhhHHHhhh-C-h-hhH-HHHHHHHHHHHhcCchh----HHH
Q 015150          212 QVIGI---DL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQL-G-V-GFF-DDKLGALCMQWLKDKVY----SIR  278 (412)
Q Consensus       212 ~~~~~---~~-~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~-~-~-~~~-~~~l~~~l~~~l~d~~~----~vr  278 (412)
                      ..-+.   .. .....+|.+.++ ..+.++.++..++.++..++... + . ... ....+|.+..+|.+...    .++
T Consensus       272 ~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~  351 (458)
T 3nmz_A          272 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII  351 (458)
T ss_dssp             SSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred             cCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence            42111   22 223568888886 56678899999988888888732 1 1 111 23478889999886554    489


Q ss_pred             HHHHHHHHHHHHHh--Chh----hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcC
Q 015150          279 DAAANNVKRLAEEF--GPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK  349 (412)
Q Consensus       279 ~~a~~~l~~l~~~~--~~~----~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~  349 (412)
                      +.|+.+|..+...+  +.+    ......+|.+..++.+.+..++..++.++..++......   ......+|.+.+++.
T Consensus       352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~  431 (458)
T 3nmz_A          352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH  431 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence            99999998887531  222    112457899999999999999999999999998432221   234568999999999


Q ss_pred             CCCchHHHHHHHHHHHHhhh
Q 015150          350 DRVPNIKFNVAKVLQSLIPI  369 (412)
Q Consensus       350 d~~~~vR~~~~~~l~~l~~~  369 (412)
                      ++++.+|..++.+|..+...
T Consensus       432 s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          432 SKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHHcC
Confidence            99999999999999999864

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.55  E-value=1.8e-15  Score=124.29  Aligned_cols=188  Identities=19%  Similarity=0.260  Sum_probs=118.5

Q ss_pred             HHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHH
Q 015150           71 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK  150 (412)
Q Consensus        71 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~  150 (412)
                      +..++.|+++.||..++..+.               ...+..+++|+++.||..+...+.               .+.+.
T Consensus        55 ~~~ll~d~~~~VR~~AA~~l~---------------~~~l~~L~~D~~~~VR~~aA~~L~---------------~~~L~  104 (244)
T 1lrv_A           55 AVQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRLP---------------REQLS  104 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTSC---------------GGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGG
T ss_pred             HHHHhcCCCHHHHHHHHHhCC---------------HHHHHHHccCcCHHHHHHHHHHCC---------------HHHHH
Confidence            345668888888888877531               123566778888888888876531               14566


Q ss_pred             HhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH
Q 015150          151 ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  230 (412)
Q Consensus       151 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~  230 (412)
                      .+++|+++.||.+++..+   .    .        +.+..+++|+++.||..++..+       +.        +.+..+
T Consensus       105 ~ll~D~d~~VR~~aA~~l---~----~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l  154 (244)
T 1lrv_A          105 ALMFDEDREVRITVADRL---P----L--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRF  154 (244)
T ss_dssp             GTTTCSCHHHHHHHHHHS---C----T--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGT
T ss_pred             HHHcCCCHHHHHHHHHhC---C----H--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHH
Confidence            677888888888877742   1    1        2345567788888888777632       11        123356


Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhc
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN  310 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~  310 (412)
                      .+|++|.||..++..+       +.        +.+..+++|+++.||.+++..+       +        .+.+..++.
T Consensus       155 ~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~  204 (244)
T 1lrv_A          155 MRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLH  204 (244)
T ss_dssp             TTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGG
T ss_pred             HcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHc
Confidence            6778888887777652       11        2334567777777887777652       1        134556677


Q ss_pred             CCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHH
Q 015150          311 NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ  364 (412)
Q Consensus       311 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~  364 (412)
                      |++|+||.+++..++               .+.+..+ +|+++.||..+...|+
T Consensus       205 D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          205 DPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             CSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            777777777777643               1334444 7777777777765543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.51  E-value=1.1e-12  Score=107.40  Aligned_cols=187  Identities=16%  Similarity=0.107  Sum_probs=140.0

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---h
Q 015150          221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---P  294 (412)
Q Consensus       221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~  294 (412)
                      ....|.+..++.++++.+|..++..+..++.....   .......+|.+.++|+++++.+|..|+.+|+.+.....   .
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            44567777777888888888888887777643211   11223467888888999899999999999988863211   1


Q ss_pred             hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc
Q 015150          295 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  371 (412)
Q Consensus       295 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~  371 (412)
                      .......+|.+..++.+++..+|..++.+++.++......   ......+|.++++++++++.+|..++.+|+.++..-.
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            1223457899999999999999999999999998643321   2345689999999999999999999999999986422


Q ss_pred             hH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          372 QS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       372 ~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ..   ......++.|..++.+++.++|..|..++..++.
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            21   2345788999999999999999999999998764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.51  E-value=3.4e-11  Score=119.81  Aligned_cols=405  Identities=11%  Similarity=0.142  Sum_probs=249.6

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCch-HHHHHHHHhHHHHhhccCc-----h------------hh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLEP-----Q------------DC   63 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~r~~a~~~l~~i~~~~~~-----~------------~~   63 (412)
                      +.+|.+.+.++..++....++ .|+.+++-+..+++..+. ..-...++.+..+.+.+.+     +            ..
T Consensus       104 ~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m  182 (980)
T 3ibv_A          104 AYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAI  182 (980)
T ss_dssp             THHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHH
Confidence            568999999999999875443 366666666666654333 2333445555544443211     0            00


Q ss_pred             ----hhhhHHH----HHhhccCCChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 015150           64 ----VAHILPV----IVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR  134 (412)
Q Consensus        64 ----~~~l~~~----l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  134 (412)
                          .+.+.+.    +.++.+..++.++..++++++......+... ....+++.+.+++.+  +.+|..|+++|..+..
T Consensus       183 ~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~  260 (980)
T 3ibv_A          183 RANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVN  260 (980)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHH
Confidence                0112333    3333333677889999999998887444222 225688899999987  7899999999998876


Q ss_pred             hhCHHHHHHhhh------hhHHHhcc-CCcHHHHHHHHHHHHhcCcc------cC----hh------HHHHhhHHHHHHh
Q 015150          135 ILNPELAIQHIL------PCVKELSS-DSSQHVRSALATVIMGMAPI------LG----KD------ATIEQLLPIFLSL  191 (412)
Q Consensus       135 ~~~~~~~~~~~~------~~l~~~~~-d~~~~vr~~~~~~l~~l~~~------~~----~~------~~~~~l~~~l~~~  191 (412)
                      .-........++      +.+..+.. +.+.+++...++.+..++..      .+    .+      .....++|.+..+
T Consensus       261 k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~  340 (980)
T 3ibv_A          261 KKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRY  340 (980)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHH
T ss_pred             cCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHH
Confidence            543221111122      22222222 45666665555544433221      11    00      2235688899999


Q ss_pred             hcccChHHHHHHHHHHHHHHHhhch--------h---hHHhhHHHHHHHHh---cCCCc-------------hHHHHHHH
Q 015150          192 LKDEFPDVRLNIISKLDQVNQVIGI--------D---LLSQSLLPAIVELA---EDRHW-------------RVRLAIIE  244 (412)
Q Consensus       192 l~d~~~~vr~~~~~~l~~i~~~~~~--------~---~~~~~~~~~l~~~~---~d~~~-------------~vr~~~~~  244 (412)
                      ..+++.+|-..+...+..+......        +   .+...+++.+.+-+   +|.+|             ..|.... 
T Consensus       341 ~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-  419 (980)
T 3ibv_A          341 LSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-  419 (980)
T ss_dssp             HTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-
T ss_pred             hCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-
Confidence            9888888887777777666544321        1   11222333333221   11111             3565555 


Q ss_pred             HhhHHHhhhChhhHHH----HHHHHHHHHhc---CchhHHHHHHHHHHHHHHHHhChh--------hhhhhhHHHHHhhh
Q 015150          245 YIPLLASQLGVGFFDD----KLGALCMQWLK---DKVYSIRDAAANNVKRLAEEFGPD--------WAMQHIVPQVLEMI  309 (412)
Q Consensus       245 ~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~~~  309 (412)
                      .+......+|++.+.+    .+.+.+.+.+.   +.+|..+++++.+++.+.+.+...        .....+++.+..++
T Consensus       420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll  499 (980)
T 3ibv_A          420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT  499 (980)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence            5566666777777666    66666666663   567999999999999988876431        11234666666665


Q ss_pred             c-----CCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHh--hcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhH
Q 015150          310 N-----NPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSI  379 (412)
Q Consensus       310 ~-----~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~--~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i  379 (412)
                      .     ++++.+|.++++.+++.++.+... .+.+.+++.++.  ++.++++.||..++.++..+++.....  .+.+.+
T Consensus       500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~i  579 (980)
T 3ibv_A          500 TSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESS  579 (980)
T ss_dssp             HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHH
T ss_pred             hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence            4     778999999999999999988653 467778888888  888899999999999999998776543  233445


Q ss_pred             HHHHHhhcCC---C----C--------------ccHHHHHHHHHHHhHHhhh
Q 015150          380 RPCLVELSED---P----D--------------VDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       380 ~~~l~~l~~d---~----~--------------~~vr~~a~~al~~~~~~~~  410 (412)
                      +..+..++.-   |    |              .+=+....+|+|.++..++
T Consensus       580 l~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~  631 (980)
T 3ibv_A          580 LAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN  631 (980)
T ss_dssp             HHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence            5555443321   1    1              1246778888888887654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.50  E-value=4e-10  Score=112.35  Aligned_cols=404  Identities=12%  Similarity=0.064  Sum_probs=251.5

Q ss_pred             chhHHHHHHHHHHHHHH----hhh---hhhHHHHHHHHHHhccCC-----chHHHHHHHHhHHHHhhccCchhhhhhhHH
Q 015150            2 PMVRRSAATNLGKFAAT----VEA---AHLKSEIMSIFEELTQDD-----QDSVRLLAVEGCGALGKLLEPQDCVAHILP   69 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~----~~~---~~~~~~l~~~l~~l~~~~-----~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~   69 (412)
                      +.||..++..|...++.    +++   ..+.+.+++.+.....++     ...+|...+.++..++.+.-++ .++.+++
T Consensus        63 ~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~-~Wp~~l~  141 (1023)
T 4hat_C           63 PQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-NWPEFIP  141 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT-TCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh-hchHHHH
Confidence            67899999999988874    222   345667777776655443     3456666788888888775443 4677888


Q ss_pred             HHHhhccCCChHHHHHHHHHHHHHHHHhCC---CCc---------------ccchHHHHHHhcC-CChHHHHHHHHHHHH
Q 015150           70 VIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPT---------------RSDVVPAYVRLLR-DNEAEVRIAAAGKVT  130 (412)
Q Consensus        70 ~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~---------------~~~l~~~l~~~l~-d~~~~vr~~a~~~l~  130 (412)
                      .+.++++. ++......+..|..+.+....   +..               .+.+++.+.+.++ ..++.+...+++++.
T Consensus       142 dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~  220 (1023)
T 4hat_C          142 ELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLL  220 (1023)
T ss_dssp             HHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            88888764 345567777777777766422   110               1234555555553 345678889999999


Q ss_pred             HHHHhhCHHHH-HHhhhhhHH-HhccCCcHHHHHHHHHHHHhcCcc-c-Chh-HHHHhhH---HHHHHh-----------
Q 015150          131 KICRILNPELA-IQHILPCVK-ELSSDSSQHVRSALATVIMGMAPI-L-GKD-ATIEQLL---PIFLSL-----------  191 (412)
Q Consensus       131 ~l~~~~~~~~~-~~~~~~~l~-~~~~d~~~~vr~~~~~~l~~l~~~-~-~~~-~~~~~l~---~~l~~~-----------  191 (412)
                      .+...++...+ .+.+++.+. .++.  ++..|..+++++..+... . ++. .+.+.+.   +.+...           
T Consensus       221 s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~  298 (1023)
T 4hat_C          221 RYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTAD  298 (1023)
T ss_dssp             HHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCC
T ss_pred             HHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            99888776543 344777777 6664  567999999999998752 2 221 1221111   111110           


Q ss_pred             -------hcccChHHHHHHHHHHHHHHHhhch-----hh---HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC--
Q 015150          192 -------LKDEFPDVRLNIISKLDQVNQVIGI-----DL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--  254 (412)
Q Consensus       192 -------l~d~~~~vr~~~~~~l~~i~~~~~~-----~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--  254 (412)
                             ..+++.+........+..+++....     +.   +....+..+..+...+++.+=..+...+..+.+.+-  
T Consensus       299 l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e  378 (1023)
T 4hat_C          299 LKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE  378 (1023)
T ss_dssp             HHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence                   1123445444444454444333211     11   112223355666667777776666777776665432  


Q ss_pred             ---hhh---HHHHHHHHHHHHhcCch---------------------hHHHHHHH-HHHHHHHHHhChhhhhhhhHHHHH
Q 015150          255 ---VGF---FDDKLGALCMQWLKDKV---------------------YSIRDAAA-NNVKRLAEEFGPDWAMQHIVPQVL  306 (412)
Q Consensus       255 ---~~~---~~~~l~~~l~~~l~d~~---------------------~~vr~~a~-~~l~~l~~~~~~~~~~~~~l~~l~  306 (412)
                         ...   +...+.+.++..+.-+.                     ........ .+|..+.. +..+...+.+++.+.
T Consensus       379 ~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~-l~~~~~~~~~~~~l~  457 (1023)
T 4hat_C          379 PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMISKLA  457 (1023)
T ss_dssp             TTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHH
Confidence               112   23456666665543211                     11111111 23333333 333334455666666


Q ss_pred             hhhcC--CchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcC-----CCCchHHHHHHHHHHHHhhhhch-HHH
Q 015150          307 EMINN--PHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK-----DRVPNIKFNVAKVLQSLIPIVDQ-SVV  375 (412)
Q Consensus       307 ~~~~~--~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~-----d~~~~vR~~~~~~l~~l~~~~~~-~~~  375 (412)
                      +.+.+  .+|+.|++++.++|.+++.+..+   .+...++|.++.+..     |+...||.+++.++|.+...+.. ..+
T Consensus       458 ~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~  537 (1023)
T 4hat_C          458 RQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF  537 (1023)
T ss_dssp             HHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence            65553  67999999999999999888754   577788998888876     45666888999999998877653 234


Q ss_pred             HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          376 EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       376 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      .+.++..+...+.|+.+.|...|+.|+..+++..+
T Consensus       538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~  572 (1023)
T 4hat_C          538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1023)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            56677777777788889999999999999998654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.49  E-value=1.2e-11  Score=118.77  Aligned_cols=273  Identities=13%  Similarity=0.036  Sum_probs=183.2

Q ss_pred             chHHHHHHhcC---CChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCC--------cHHHHHHHHHHHHhcCc
Q 015150          105 DVVPAYVRLLR---DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS--------SQHVRSALATVIMGMAP  173 (412)
Q Consensus       105 ~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~--------~~~vr~~~~~~l~~l~~  173 (412)
                      +.+..+...+.   +.++.+|..|+.++|-+....+.+     ++..+...+.+.        .+.+|..++-.+|.+..
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~  466 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM  466 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence            34566666665   567889999999999887766543     234444444332        36789888888887653


Q ss_pred             ccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150          174 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  253 (412)
Q Consensus       174 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  253 (412)
                      --+.+    .+++.+...+.|++..+|..++-+++.+.-..+.+.....++..+   .++.+..+|+.++..|+.+.  +
T Consensus       467 GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~  537 (963)
T 4ady_A          467 GSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--Y  537 (963)
T ss_dssp             TCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--T
T ss_pred             CCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--C
Confidence            33333    455666666777777788788888887744334333333444433   34667788998888887663  3


Q ss_pred             ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150          254 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       254 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      |.+...+.++..   +..+.++-+|..++.+++--.-..|.....+.++   .....|.+..+|.+++.+++.+.-  |.
T Consensus       538 g~~e~~~~li~~---L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL---~~~~~d~~d~VRraAViaLGlI~~--g~  609 (963)
T 4ady_A          538 GRQELADDLITK---MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLL---HVAVSDSNDDVRRAAVIALGFVLL--RD  609 (963)
T ss_dssp             TCGGGGHHHHHH---HHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHH---HHHHHCSCHHHHHHHHHHHHHHTS--SS
T ss_pred             CChHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHH---HHhccCCcHHHHHHHHHHHHhhcc--CC
Confidence            443333333332   3447889999999888875554455443223233   333457778899999999998753  22


Q ss_pred             hHHHHhhHHHHHh-hcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          334 EITCSQLLPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       334 ~~~~~~il~~l~~-~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      .    ...|.++. +.++.++.||..++.++|.+...-+.    ..++..|..+++|+|..||+.|+.||+.+..
T Consensus       610 ~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          610 Y----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             C----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence            2    23444444 45678899999999999999754443    4678899999999999999999999998863

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.47  E-value=3.1e-10  Score=106.95  Aligned_cols=378  Identities=8%  Similarity=0.034  Sum_probs=249.1

Q ss_pred             HHHHHHhc-cCCchHHHHHHHHhHHHHhhccC-chhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC-CCcccc
Q 015150           29 MSIFEELT-QDDQDSVRLLAVEGCGALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSD  105 (412)
Q Consensus        29 ~~~l~~l~-~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~  105 (412)
                      .+.+.+.. +.++..+...+++.+...+..-. .+...+...+.+.+.+++  ..+|..++-.|.++....+. +....+
T Consensus       257 ~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~  334 (778)
T 3opb_A          257 SKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQ  334 (778)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHH
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHH
Confidence            34444444 33444555566666655543210 233445566777777765  47788888888887764432 223356


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-HHH--HHhhhhhHHHhccC-CcHHHHHHHHHHHHhcCcccC-----
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELA--IQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG-----  176 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~-----  176 (412)
                      +.+.+.+++.+++...|..|++.|..+...-.- +.+  .+.++..+.+++++ .+..+...++..+.++.....     
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e  414 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX  414 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence            888899988887666699999999887542111 111  12245666666653 455677777777777653211     


Q ss_pred             ---------------h------h------H---------HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc-h-hh
Q 015150          177 ---------------K------D------A---------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-I-DL  218 (412)
Q Consensus       177 ---------------~------~------~---------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~-~-~~  218 (412)
                                     +      .      .         .....+|.+..+++.+++.+|..++++|..+...-. . ..
T Consensus       415 ~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~l  494 (778)
T 3opb_A          415 XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQL  494 (778)
T ss_dssp             CC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred             hhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                           0      0      0         012578899999999999999999999999975532 1 22


Q ss_pred             HHhhHHHHHHHHhcCCCch---HHHHHHHHhhHHHhhhChhhHH-----HHHHHHHHHHhcC-chh-------------H
Q 015150          219 LSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLKD-KVY-------------S  276 (412)
Q Consensus       219 ~~~~~~~~l~~~~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------------~  276 (412)
                      ..+..++.+..++.+....   .|..++.++..+.....+....     ...+|.+..+|.. +..             -
T Consensus       495 vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l  574 (778)
T 3opb_A          495 AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT  574 (778)
T ss_dssp             HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred             HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence            3456788899988776543   8999999998887544332211     1467778888872 221             1


Q ss_pred             HHHHHHHHHHHHHHHhCh------h-hhh-hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---hHHH---Hh---
Q 015150          277 IRDAAANNVKRLAEEFGP------D-WAM-QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITC---SQ---  339 (412)
Q Consensus       277 vr~~a~~~l~~l~~~~~~------~-~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~---~~---  339 (412)
                      -+..|+.+|..++..-++      . .+. ...+|.+.+++.+.+..+|.++++++..++..-..   +++.   +.   
T Consensus       575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~  654 (778)
T 3opb_A          575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR  654 (778)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence            267888999888874321      1 223 25889999999999999999999999999853321   2221   11   


Q ss_pred             hHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHH-hhHHHHHHhhcCC--CCccHHHHHHHHHHHhHHh
Q 015150          340 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVE-KSIRPCLVELSED--PDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       340 il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~-~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~  408 (412)
                      =++.++.++...+..+|.+|+.+|..+......   ..+. ...++.+..++.+  ++.++|.++..++..+.+.
T Consensus       655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            277888999999999999999999998643322   2222 2466677777777  8999999999999999863

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.47  E-value=2.4e-10  Score=113.90  Aligned_cols=404  Identities=8%  Similarity=0.020  Sum_probs=252.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhcc---Cchh---------------hh
Q 015150            3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL---EPQD---------------CV   64 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~---~~~~---------------~~   64 (412)
                      .+|.+.+.++..+++..-++ -|+.+++.+..+++.. +..+...+..+..+.+..   +.+.               ..
T Consensus       115 ~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~  192 (1023)
T 4hat_C          115 NLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF  192 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence            46777888888888765443 3778888888877654 345666677776666542   1110               12


Q ss_pred             hhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHH-HhcCCChHHHHHHHHHHHHHHHHh-h-CH-
Q 015150           65 AHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYV-RLLRDNEAEVRIAAAGKVTKICRI-L-NP-  138 (412)
Q Consensus        65 ~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~-~-~~-  138 (412)
                      +.++.++.+.++ ..++.+...++++++....-++-.. ....+++.+. .++.+  +..|..|+++|..+... . ++ 
T Consensus       193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~--~~~r~~A~ecL~eIv~~~~~~~~  270 (1023)
T 4hat_C          193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDTRAITLKCLTEVSNLKIPQDN  270 (1023)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS--HHHHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCC--HHHHHHHHHHHHHHHccccCCch
Confidence            234555555543 3567788889999998877544332 2356888888 88765  67999999999998762 2 22 


Q ss_pred             HHHH-------HhhhhhH-----------HH---hccCCcHHHHHHHHHHHHhcCccc----C-hh---HHHHhhHHHHH
Q 015150          139 ELAI-------QHILPCV-----------KE---LSSDSSQHVRSALATVIMGMAPIL----G-KD---ATIEQLLPIFL  189 (412)
Q Consensus       139 ~~~~-------~~~~~~l-----------~~---~~~d~~~~vr~~~~~~l~~l~~~~----~-~~---~~~~~l~~~l~  189 (412)
                      ..+.       ..+++.+           ..   ...+.+.+.....+..+..+++..    . .+   ......+..+.
T Consensus       271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll  350 (1023)
T 4hat_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence            0111       1112211           11   112334555555666554443221    1 11   11112233455


Q ss_pred             HhhcccChHHHHHHHHHHHHHHHhhchh-----hH---HhhHHHHHHHHhc---------C--CCc----------hHHH
Q 015150          190 SLLKDEFPDVRLNIISKLDQVNQVIGID-----LL---SQSLLPAIVELAE---------D--RHW----------RVRL  240 (412)
Q Consensus       190 ~~l~d~~~~vr~~~~~~l~~i~~~~~~~-----~~---~~~~~~~l~~~~~---------d--~~~----------~vr~  240 (412)
                      .....++.++-..+...+..+...+-.+     .+   ...+.+.+.+-+.         |  ..|          ....
T Consensus       351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f  430 (1023)
T 4hat_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY  430 (1023)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred             HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence            5555667788777777777776543211     11   1233333333211         1  122          1111


Q ss_pred             -HHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhChh---hhhhhhHHHHHhhhc----
Q 015150          241 -AIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMIN----  310 (412)
Q Consensus       241 -~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~----  310 (412)
                       ..-.++..+....+. ...+.+.+.+.+.+.+  .+|..|++++.++|.+.+.+.++   .+...++|.+..+..    
T Consensus       431 ~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~  509 (1023)
T 4hat_C          431 KSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG  509 (1023)
T ss_dssp             HHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence             111444444444333 4555566766666654  67999999999999999877643   345677788887775    


Q ss_pred             -CCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH----------HHhh
Q 015150          311 -NPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV----------VEKS  378 (412)
Q Consensus       311 -~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~----------~~~~  378 (412)
                       |++..+|.+++..+|+.++.+... .+.+.+++.+++.+.|+++.|..+|++++..+++..+...          +.+.
T Consensus       510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~  589 (1023)
T 4hat_C          510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT  589 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence             466778999999999999877543 4677888889999999999999999999999988755432          4456


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          379 IRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       379 i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      ++..+.....+-+.+-+..+.+|++.+++.+++
T Consensus       590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERS  622 (1023)
T ss_dssp             HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence            666666666777788888999999999987763

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.46  E-value=1.8e-12  Score=106.19  Aligned_cols=187  Identities=12%  Similarity=0.084  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC---
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---   98 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~---   98 (412)
                      .....+.+..+++++++.+|..|+.++..++...+.   .......+|.+.+++.++++.+|..++.+|++++....   
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            344566777889999999999999999999865322   12234588999999999999999999999999874211   


Q ss_pred             CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc
Q 015150           99 PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL  175 (412)
Q Consensus        99 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  175 (412)
                      ........+|.+..+++++++.+|..|+.+|..++......   ......+|.+.+++.++++.+|..++.++..++..-
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            11122347899999999999999999999999987532221   223457888888888888899999999888887532


Q ss_pred             Chh---HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHH
Q 015150          176 GKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  211 (412)
Q Consensus       176 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~  211 (412)
                      ...   ......++.+.+++.++++.+|..+..+|..++
T Consensus       170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            111   112356788888888888888888888887765

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.44  E-value=2.9e-10  Score=107.14  Aligned_cols=363  Identities=8%  Similarity=0.049  Sum_probs=225.5

Q ss_pred             hHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-hhhhhhhHHHHHhhccCCChH
Q 015150            4 VRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWR   81 (412)
Q Consensus         4 vR~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-~~~~~~l~~~l~~l~~d~~~~   81 (412)
                      +..++.+.+...+-.-. .+.+.....+.+...+++  +.+|..|+-+|..+...-.. +.....+.+.+.+.+.+++..
T Consensus       272 ~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~  349 (778)
T 3opb_A          272 FTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVP  349 (778)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCcc
Confidence            34445555554443211 233344455666666654  35666676777666654322 223345666666666665555


Q ss_pred             HHHHHHHHHHHHHHHhC--CCC-cccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhC--------------------
Q 015150           82 VRYMVANQLYELCEAVG--PEP-TRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILN--------------------  137 (412)
Q Consensus        82 vR~~~~~~l~~l~~~~~--~~~-~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~--------------------  137 (412)
                      .|+.+++.|+.+...-.  ... ..+..++.+.+++++ .+..+-..+...+..+....+                    
T Consensus       350 ~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~  429 (778)
T 3opb_A          350 KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXX  429 (778)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccC
Confidence            56677777766542211  000 012234444444442 333344444444443332111                    


Q ss_pred             H---------------------HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh--hHHHHhhHHHHHHhhcc
Q 015150          138 P---------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKD  194 (412)
Q Consensus       138 ~---------------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d  194 (412)
                      +                     ......++|.+..+++..++.+|..+++++..++..-..  ....+..++.+..++.+
T Consensus       430 p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s  509 (778)
T 3opb_A          430 PAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLAN  509 (778)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTC
T ss_pred             cccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence            0                     001233788889999899999999999999999754322  22335678888888877


Q ss_pred             cChH---HHHHHHHHHHHHHHhhchhhHH-----hhHHHHHHHHhcC-CCc-------------hHHHHHHHHhhHHHhh
Q 015150          195 EFPD---VRLNIISKLDQVNQVIGIDLLS-----QSLLPAIVELAED-RHW-------------RVRLAIIEYIPLLASQ  252 (412)
Q Consensus       195 ~~~~---vr~~~~~~l~~i~~~~~~~~~~-----~~~~~~l~~~~~d-~~~-------------~vr~~~~~~l~~l~~~  252 (412)
                      ....   +|..|+.+|..+.....+....     ...+|.+..++.. +..             .-+..++.++..++..
T Consensus       510 ~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~  589 (778)
T 3opb_A          510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS  589 (778)
T ss_dssp             C---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC
Confidence            6443   8999999999998554433221     2567888888872 221             1266788888888876


Q ss_pred             hCh------h-hHH-HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhh------hhHHHHHhhhcCCchH
Q 015150          253 LGV------G-FFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQ------HIVPQVLEMINNPHYL  315 (412)
Q Consensus       253 ~~~------~-~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~------~~l~~l~~~~~~~~~~  315 (412)
                      -+.      . .+. ...+|.+..++.+++..||.+|++++..+...-..   +++..      .-++.+..++...+..
T Consensus       590 ~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~  669 (778)
T 3opb_A          590 ETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVE  669 (778)
T ss_dssp             CSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHH
T ss_pred             CcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHH
Confidence            421      1 233 35889999999999999999999999999864321   22211      1267888999999999


Q ss_pred             HHHHHHHHHHHhccccch--hH-HH-HhhHHHHHhhcCC--CCchHHHHHHHHHHHHhh
Q 015150          316 YRMTILQAISLLAPVMGS--EI-TC-SQLLPVVINASKD--RVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       316 ~r~~~~~~l~~l~~~~~~--~~-~~-~~il~~l~~~l~d--~~~~vR~~~~~~l~~l~~  368 (412)
                      +|.++..++..+....+.  .. +. ...++.++..+++  +++++|..++.++..++.
T Consensus       670 ~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          670 SQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            999999999998543322  11 12 2467777888888  899999999999999986

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.38  E-value=1.7e-09  Score=81.33  Aligned_cols=217  Identities=16%  Similarity=0.150  Sum_probs=162.5

Q ss_pred             HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHH-HhcCCCchHHHHHHHHhhHHHhhhChhhHH
Q 015150          181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFD  259 (412)
Q Consensus       181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  259 (412)
                      .+.++..+..+++|+-|.||+++++.+..+.+... +.+ ..+..-+.- +-+++.-..-+.....++.++..-+ + ..
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-el~-epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-e-~v  105 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-DLY-EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-E-LV  105 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-GGH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-H-HH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-HHH-HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-H-HH
Confidence            35677888899999999999999999998887643 222 222333333 3466666777788888998887543 2 34


Q ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHh
Q 015150          260 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ  339 (412)
Q Consensus       260 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~  339 (412)
                      ..++|++..-..-.++.+|-....+|+++....  +.....+...+..++.+++..-|.+++.+++.+.... . .|..-
T Consensus       106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaran--P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~-~yv~P  181 (253)
T 2db0_A          106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKAN--PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-F-KYVNP  181 (253)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-H-HHHGG
T ss_pred             HhhHHHHHHHHhcCCccceecHHHHHHHHHHhC--hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-c-cccCc
Confidence            558999988888788999999999999998754  2234556677778888999888999999998876432 2 35667


Q ss_pred             hHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          340 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       340 il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      ++|.+..+|.|.+.-||.++..+|++++.. .+. +..-+...+. -++|++..|...+.++++.+.-.
T Consensus       182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~-npk-lRkii~~kl~-e~~D~S~lv~~~V~egL~rl~l~  247 (253)
T 2db0_A          182 FLPRIINLLHDGDEIVRASAVEALVHLATL-NDK-LRKVVIKRLE-ELNDTSSLVNKTVKEGISRLLLL  247 (253)
T ss_dssp             GHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHH-HHHHHHHHHH-HCCCSCHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHH-HHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999863 221 3333333333 35999999999999999988654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.36  E-value=1.3e-10  Score=95.81  Aligned_cols=180  Identities=16%  Similarity=0.162  Sum_probs=125.3

Q ss_pred             HHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHH--HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh------hh
Q 015150          226 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD------WA  297 (412)
Q Consensus       226 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~  297 (412)
                      .+...+-+++|+.|.++++.+.........+.+.  +-+++-+.-.+.|.+..|-..++..+..++..++..      .-
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e  129 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE  129 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            3444555667888887777777665443222111  112222222345788888888888888877665432      11


Q ss_pred             hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHh
Q 015150          298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEK  377 (412)
Q Consensus       298 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~  377 (412)
                      ...++|.+.+-++|++..+|..+-..+..+...++..    .+++.+.+.++++++.+|..++..++.+.+.+|..  ..
T Consensus       130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~  203 (266)
T 2of3_A          130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PL  203 (266)
T ss_dssp             HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GG
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--cc
Confidence            3467888888888888888888888887776655543    56666777788888888888888888888887765  23


Q ss_pred             hHH---HHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          378 SIR---PCLVELSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       378 ~i~---~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      ..+   |.+.++++|+|.+||..|..++..+...+|+
T Consensus       204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd  240 (266)
T 2of3_A          204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD  240 (266)
T ss_dssp             GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence            466   8888888888888888888888888888875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.36  E-value=2e-10  Score=111.83  Aligned_cols=288  Identities=14%  Similarity=0.187  Sum_probs=210.1

Q ss_pred             HHHHhccCCchHHHHHHHHhHHHHhhc-cCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccc
Q 015150           31 IFEELTQDDQDSVRLLAVEGCGALGKL-LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSD  105 (412)
Q Consensus        31 ~l~~l~~~~~~~~r~~a~~~l~~i~~~-~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~  105 (412)
                      ++..+..++..+ |..++..+..+... .........++..+.+...++...  ..++..++.++...+...    +.-.
T Consensus        19 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~   95 (986)
T 2iw3_A           19 LFQKLSVATADN-RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ   95 (986)
T ss_dssp             HHHHHTTCCTTT-HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred             HHhhccccchhH-HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence            333344433333 45555566655543 222222346888888888886544  889999999997665321    2224


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCC-cHHHHHHHHHHHHhcCcccChhH--HHH
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKDA--TIE  182 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~  182 (412)
                      ++|.+...+.|....||.+|..+...+...++++.. ..++|.+...+.+. .|..+..++.++..++...+...  ...
T Consensus        96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~  174 (986)
T 2iw3_A           96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMP  174 (986)
T ss_dssp             THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence            678888999999999999999999999999998765 67889988887654 69999999999999987653322  236


Q ss_pred             hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC----hhhH
Q 015150          183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFF  258 (412)
Q Consensus       183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~  258 (412)
                      .++|.+...+.|..++|..++..++..++..++...+ ..++|.+.+.+.+++.     .-++++.++...-    ....
T Consensus       175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~  248 (986)
T 2iw3_A          175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPAT  248 (986)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHH
T ss_pred             chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchh
Confidence            8999999999999999999999999999998886655 6778999999988843     2334444433210    1123


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh----hhhhhhHHHHHhhhcC-CchHHHHHHHHHHHHhc
Q 015150          259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINN-PHYLYRMTILQAISLLA  328 (412)
Q Consensus       259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~  328 (412)
                      ...+.|++...|+++...+++.++..+..+++.+..+    .|...++|.+.+.... .++.+|+.+-.++..+.
T Consensus       249 l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          249 LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999998877653    3456677777665543 45888988888877774

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.6e-11  Score=104.90  Aligned_cols=182  Identities=15%  Similarity=0.150  Sum_probs=132.1

Q ss_pred             HHHHhcCCCchHHHHHHHHhhHHHhhhChhhH-------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh---
Q 015150          227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---  296 (412)
Q Consensus       227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---  296 (412)
                      +.+-+.+++|+.|..+++.+..+.........       ...+.+.+-+.+.|.|..|...++.++..++..++...   
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            55678899999999999888777654432211       11234566778889999999999999998887665321   


Q ss_pred             -----hhhhhHHHHHh-hhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh
Q 015150          297 -----AMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  370 (412)
Q Consensus       297 -----~~~~~l~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  370 (412)
                           ....++|.+.+ .+.+....+|..++.++..++...+.   ...+++.+...+++++|.+|..++.+|..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                 23456777765 47888888999988888877654432   2345677788889999999999999999988877


Q ss_pred             chH-----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          371 DQS-----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       371 ~~~-----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                      |..     .....+++.+..+++|+|++||..|...+..+...+|.
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~  216 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN  216 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence            753     23345677777888999999999999999999988874

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.34  E-value=3.8e-10  Score=98.98  Aligned_cols=251  Identities=12%  Similarity=0.049  Sum_probs=172.9

Q ss_pred             HHHHHHHHHHHHHHHhhC--HHHHHHhhhhhHHHhcc-----------CCcHHHHHHHHHHHHhcCcccC--hhHH--HH
Q 015150          120 EVRIAAAGKVTKICRILN--PELAIQHILPCVKELSS-----------DSSQHVRSALATVIMGMAPILG--KDAT--IE  182 (412)
Q Consensus       120 ~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~-----------d~~~~vr~~~~~~l~~l~~~~~--~~~~--~~  182 (412)
                      .....|+.+|+.++..-.  ........++.+..++.           ..++.++..++.++..++..-.  +..+  ..
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            334455666666553211  11122334555555542           1356889999999999985332  1222  23


Q ss_pred             hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc---hhh-HHhhHHHHHHHH-hcCCCchHHHHHHHHhhHHHhhh-C-h
Q 015150          183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQL-G-V  255 (412)
Q Consensus       183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~---~~~-~~~~~~~~l~~~-~~d~~~~vr~~~~~~l~~l~~~~-~-~  255 (412)
                      ..+|.+..++++++++++..++.+|..+...-+   ... .....+|.+.++ ..+.++.++..++.++..++... + .
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            568999999999999999999999988865311   122 224568888886 56678899998888888887632 1 1


Q ss_pred             -hhH-HHHHHHHHHHHhcCchh----HHHHHHHHHHHHHHHHh--Chh---h-hhhhhHHHHHhhhcCCchHHHHHHHHH
Q 015150          256 -GFF-DDKLGALCMQWLKDKVY----SIRDAAANNVKRLAEEF--GPD---W-AMQHIVPQVLEMINNPHYLYRMTILQA  323 (412)
Q Consensus       256 -~~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~---~-~~~~~l~~l~~~~~~~~~~~r~~~~~~  323 (412)
                       ... ....+|.+.+++.+.+.    .+++.|+.+|..+...+  +++   . .....+|.+.+++.+.+..++..++.+
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a  286 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT  286 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence             112 24578889999986654    58999999888887531  221   1 123578999999999999999999999


Q ss_pred             HHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh
Q 015150          324 ISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  370 (412)
Q Consensus       324 l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~  370 (412)
                      +..++......   ......+|.|.+++.++++.+|..++.+|..+...-
T Consensus       287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99998432221   234467999999999999999999999999998753

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.33  E-value=2.3e-10  Score=100.34  Aligned_cols=250  Identities=12%  Similarity=0.005  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHhcCcccC--hhHHHHhhHHHHHHhhc-----------ccChHHHHHHHHHHHHHHHhhc--hhhH--Hh
Q 015150          159 HVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQVIG--IDLL--SQ  221 (412)
Q Consensus       159 ~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~-----------d~~~~vr~~~~~~l~~i~~~~~--~~~~--~~  221 (412)
                      .....++++|++++..-.  +.......+|.+..++.           ..++.+|..++.+|..++..-.  ...+  ..
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            444566777777763311  11112345666666663           1247799999999999975432  1222  24


Q ss_pred             hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hh-HHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHh-C--
Q 015150          222 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEF-G--  293 (412)
Q Consensus       222 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~--  293 (412)
                      .++|.+.+++.++++.++..++.+|..++..-+.   .. .....+|.++++ ++..+..+++.|+.++..+.... +  
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            5699999999999999999999999999764111   11 223457888886 56677889999999998887522 1  


Q ss_pred             hhhh-hhhhHHHHHhhhcCCch----HHHHHHHHHHHHhccc--cchh----HHHHhhHHHHHhhcCCCCchHHHHHHHH
Q 015150          294 PDWA-MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE----ITCSQLLPVVINASKDRVPNIKFNVAKV  362 (412)
Q Consensus       294 ~~~~-~~~~l~~l~~~~~~~~~----~~r~~~~~~l~~l~~~--~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~  362 (412)
                      .... ....+|.|.+++.+++.    .++..++.++..++..  .+.+    ......+|.+++++.+++..++..++.+
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a  286 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT  286 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence            1222 35688999998886543    5888888889888742  1222    1233579999999999999999999999


Q ss_pred             HHHHhhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          363 LQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       363 l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      |..++..-..   .......+|.|..++.+++.++|..|+.+|..+...
T Consensus       287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9999742111   133457899999999999999999999999998764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.30  E-value=8.3e-08  Score=95.57  Aligned_cols=403  Identities=13%  Similarity=0.052  Sum_probs=239.1

Q ss_pred             chhHHHHHHHHHHHHHH----hhh---hhhHHHHHHHHHHhccCC-----chHHHHHHHHhHHHHhhccCchhhhhhhHH
Q 015150            2 PMVRRSAATNLGKFAAT----VEA---AHLKSEIMSIFEELTQDD-----QDSVRLLAVEGCGALGKLLEPQDCVAHILP   69 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~----~~~---~~~~~~l~~~l~~l~~~~-----~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~   69 (412)
                      +.||.-++..|...++.    +++   ..+.+.++..+.....++     ++.++...+.++..++.+.-++ .++.+++
T Consensus        75 ~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-~Wp~fi~  153 (1073)
T 3gjx_A           75 MNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-HWPTFIS  153 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-TCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-hccHHHH
Confidence            67899999999998874    222   345667777776655432     4567777788888888774333 3566777


Q ss_pred             HHHhhccCCChHHHHHHHHHHHHHHHHhCCCC------------------cccchHHHHHHhcC-CChHHHHHHHHHHHH
Q 015150           70 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------------------TRSDVVPAYVRLLR-DNEAEVRIAAAGKVT  130 (412)
Q Consensus        70 ~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~------------------~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~  130 (412)
                      -+.+.++. ++..+...+..|..+.+....-.                  ..+.+++.+...++ ..++.+...++++++
T Consensus       154 dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~  232 (1073)
T 3gjx_A          154 DIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLL  232 (1073)
T ss_dssp             HHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            77766643 34566777788887777643210                  01345555555553 456788889999999


Q ss_pred             HHHHhhCHHHHH-HhhhhhH-HHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHH---H----Hhh---------
Q 015150          131 KICRILNPELAI-QHILPCV-KELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF---L----SLL---------  192 (412)
Q Consensus       131 ~l~~~~~~~~~~-~~~~~~l-~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l---~----~~l---------  192 (412)
                      .+...++...+. +.+++.+ ...+.  ++..|.++++++..+...-.+ .+.+.+...+   .    .++         
T Consensus       233 ~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~-~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~  309 (1073)
T 3gjx_A          233 RFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVS-QYEEQFETLFTLTMMQLKQMLPLNTNIRLA  309 (1073)
T ss_dssp             HHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSG-GGHHHHHHHHHHHHHHHHHHSCTTSCHHHH
T ss_pred             HHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence            999988766543 3466766 45554  567999999999998754211 1112221111   1    111         


Q ss_pred             ----cccChHHHHHHHHHHHHHHHhhc------hh--hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh----
Q 015150          193 ----KDEFPDVRLNIISKLDQVNQVIG------ID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----  256 (412)
Q Consensus       193 ----~d~~~~vr~~~~~~l~~i~~~~~------~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----  256 (412)
                          .+++++.-.+....+..+++...      ++  ......+..+..+...++..+=..+...+..+...+-.+    
T Consensus       310 y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~  389 (1073)
T 3gjx_A          310 YSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFS  389 (1073)
T ss_dssp             HHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccc
Confidence                12222332223333333322211      11  011122333455666667777666666666655433100    


Q ss_pred             --------------------hH---HHHHHHHHHHHhcCc---------------------hh-HHHHHHHHHHHHHHHH
Q 015150          257 --------------------FF---DDKLGALCMQWLKDK---------------------VY-SIRDAAANNVKRLAEE  291 (412)
Q Consensus       257 --------------------~~---~~~l~~~l~~~l~d~---------------------~~-~vr~~a~~~l~~l~~~  291 (412)
                                          .+   ...+...++.-+.-+                     +. ..+...-.++.. +..
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~-lt~  468 (1073)
T 3gjx_A          390 TSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVY-LTH  468 (1073)
T ss_dssp             CCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHH-HHH
T ss_pred             ccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHH-Hhc
Confidence                                01   122333333333211                     10 122222222322 233


Q ss_pred             hChhhhhhhhHHHHHhhhc--CCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCC-----CchHHHHHHH
Q 015150          292 FGPDWAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDR-----VPNIKFNVAK  361 (412)
Q Consensus       292 ~~~~~~~~~~l~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~-----~~~vR~~~~~  361 (412)
                      ++.+.....+++.+.+.+.  ..+|+.+++.+.++|.++..+..+   .+...+++.++.+...+     .+.++..++.
T Consensus       469 l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~  548 (1073)
T 3gjx_A          469 LDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMY  548 (1073)
T ss_dssp             HCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHH
Confidence            4444444455566655443  356999999999999998877742   57788888888877544     3446666778


Q ss_pred             HHHHHhhhhchH-HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          362 VLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       362 ~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      ++|.....+... .+.+.++..+...+.|+++.|+..|+.|+..+++..+
T Consensus       549 vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~  598 (1073)
T 3gjx_A          549 IVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR  598 (1073)
T ss_dssp             HHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred             HHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            888887665432 3556677777777889999999999999999998765

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.28  E-value=8.3e-10  Score=94.21  Aligned_cols=209  Identities=12%  Similarity=0.057  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHHhhch--hhHHhhHHHHHHH-HhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhc
Q 015150          198 DVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLK  271 (412)
Q Consensus       198 ~vr~~~~~~l~~i~~~~~~--~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~  271 (412)
                      +-|..++..|..++...+.  +......+|.+.. ++.++++.+|..++.+++.++.....   .......+|.++.+|+
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            5677777788877765442  1222356788888 99999999999999999999864321   1223346788888888


Q ss_pred             -CchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch---hHHHHhhHHHH
Q 015150          272 -DKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVV  344 (412)
Q Consensus       272 -d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~il~~l  344 (412)
                       +++..+|..|+.+|+.++....+   .+.....+|.|..++.+++..++..++++++.++.....   ......++|.+
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L  214 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL  214 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence             45789999999999999864322   223346889999999999999999999999999865221   12455789999


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHhhhhchH---------HHHhhHHHHHHhhc-CCCCccHHHHHHHHHHHhH
Q 015150          345 INASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSIRPCLVELS-EDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---------~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~  406 (412)
                      ..++.++++.||..++.+|+.+.......         .+...+-+.+..+. .+...++...+...+..+.
T Consensus       215 v~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999998762211         11122323334443 2234677777777776654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.28  E-value=1.3e-10  Score=100.58  Aligned_cols=282  Identities=10%  Similarity=0.040  Sum_probs=143.5

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150           26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD  105 (412)
Q Consensus        26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  105 (412)
                      ..+.+-+.++..+++...|+...-.+..+++. +++ .. .+.+.+.+-++|+++-+|-.+++.++.+..    ....++
T Consensus        67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~  139 (355)
T 3tjz_B           67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQA  139 (355)
T ss_dssp             HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHH
Confidence            44566667778888888888877777776665 222 22 667777778888888888888888887753    223456


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  185 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  185 (412)
                      +.+.+.+.+.|.++.||+.|+-+...+.... ++ ..+.+++.+.+++.|+++.|...++..+..+...-  ......++
T Consensus       140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~a~~kLv  215 (355)
T 3tjz_B          140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FD-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RLAVSKMI  215 (355)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HH-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hHHHHHHH
Confidence            7777888888888888888888888776543 33 23457777788888888888877777777765421  11223344


Q ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH
Q 015150          186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  265 (412)
Q Consensus       186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  265 (412)
                      +.+.+. .-.++..+...++.+..++..- .......+++.+...+++.++.|-..++.++-.+... +... .....+.
T Consensus       216 ~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~~-~~~a~~~  291 (355)
T 3tjz_B          216 SKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAKE-LAPAVSV  291 (355)
T ss_dssp             HHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCT
T ss_pred             HHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHHH-HHHHHHH
Confidence            443321 0112433333444443333221 0122345667777777778888888888777665442 2111 1223445


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150          266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI  324 (412)
Q Consensus       266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l  324 (412)
                      +..++..+++++|..|+..+..+......  .....-..+.+++.|++..++..|+..+
T Consensus       292 L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          292 LQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             HHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence            55667777778888888888777764321  1233445566677777766665555444

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.27  E-value=8.3e-11  Score=101.89  Aligned_cols=283  Identities=10%  Similarity=0.084  Sum_probs=157.3

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhh
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL  184 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  184 (412)
                      .+++.+.+++..++...|+.....+..+++. .++.+  -+...+.+-++|+++.+|..+..+++.+..    +...+.+
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l  140 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAI  140 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHH
Confidence            4566677889999999999999988888776 23322  356677777889999999999999998864    2345688


Q ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHH
Q 015150          185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  264 (412)
Q Consensus       185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  264 (412)
                      .+.+.+.+.|.++.||++|+-+...+... .++.. +.+++.+.+++.|.++.|...++..+..+.+.- . .....+++
T Consensus       141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~-~a~~kLv~  216 (355)
T 3tjz_B          141 ERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-R-LAVSKMIS  216 (355)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-H-HHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-h-HHHHHHHH
Confidence            89999999999999999999888877655 34443 568888899999999999988888887776532 1 11222333


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHH
Q 015150          265 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  344 (412)
Q Consensus       265 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l  344 (412)
                      .+... .-.+++.....++.+..+...- .+.....+++.+...+++.+..|-..++.++..+.. .+.. ......+.+
T Consensus       217 ~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-~~~~a~~~L  292 (355)
T 3tjz_B          217 KFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-ELAPAVSVL  292 (355)
T ss_dssp             HHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTH
T ss_pred             HHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-HHHHHHHHH
Confidence            32211 0113444444444443333211 012345688888888899999888888888877654 2222 223344556


Q ss_pred             HhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 015150          345 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  404 (412)
Q Consensus       345 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  404 (412)
                      ..++..+.+++|..+++.+..+......  ..+.....+..+++|+|..++..|...+-.
T Consensus       293 ~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          293 QLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLK  350 (355)
T ss_dssp             HHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence            6667788899999999999999874332  234566778888999999999888877644

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.26  E-value=8.1e-11  Score=104.25  Aligned_cols=257  Identities=13%  Similarity=0.081  Sum_probs=169.5

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhH
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  185 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  185 (412)
                      +...+..-+-|+.|++|-.|+-+|..+.+..+.....  .      -..+.+-.+|-.++-++.+++...++..      
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR--~------~~~N~DLAvRLLCVLALDRFGDYVSDqV------  240 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDI--Q------IRVDSKLFSKIYEILVTDKFNDFVDDRT------  240 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----C--C------CCCCTTHHHHHHHHHHHBCCBBCSSSSC------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCce--e------ccccHHHHHHHHHHHHhccccccccCee------
Confidence            6677777788999999999999999988876542111  0      1122244555555555555554433221      


Q ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH
Q 015150          186 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  265 (412)
Q Consensus       186 ~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  265 (412)
                                -..||..++++|+.+ ..++.+   ..++..+......+.|.+|.+.+-.+..+...+..   .+.++|.
T Consensus       241 ----------VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a  303 (800)
T 3oc3_A          241 ----------VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK  303 (800)
T ss_dssp             ----------BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred             ----------eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence                      246999999999999 776655   23444444556788999999988888777333322   5778999


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHH
Q 015150          266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI  345 (412)
Q Consensus       266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~  345 (412)
                      ++..|+|.+.+||..|+.+|..++..-..+.+.+.+...|.+. .|-+ .--...+..++.++..-......+.++|.+.
T Consensus       304 VL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L-DDLS-ASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~  381 (800)
T 3oc3_A          304 LVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESE-ELIS-VSKTSNLSLLTKIYRENPELSIPPERLKDIF  381 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC-CSCC-TTHHHHHHHHHHHHHHCTTCCCCSGGGGGTG
T ss_pred             HHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh-cccc-hhhHHHHHHHHHHHcCCcccccChHHHHHHH
Confidence            9999999999999999999988771111122223333333333 3322 1223445555555432111112248899999


Q ss_pred             hhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHh-hcCCCCccHHHHHHHHHH
Q 015150          346 NASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQALQ  403 (412)
Q Consensus       346 ~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~  403 (412)
                      .++.++.++||.++++++..+.        ...++..+-+ ++-+++.+|+..+.++..
T Consensus       382 PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          382 PCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             hhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999999999999999998776        2345555544 677888999999888874

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.24  E-value=1.7e-09  Score=89.28  Aligned_cols=179  Identities=15%  Similarity=0.097  Sum_probs=133.6

Q ss_pred             hhcccChHHHHHHHHHHHHHHHhhchhhH--HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChh------hHHHHH
Q 015150          191 LLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG------FFDDKL  262 (412)
Q Consensus       191 ~l~d~~~~vr~~~~~~l~~i~~~~~~~~~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l  262 (412)
                      .+-+.+..-|..++..|.........+.+  .+.+++-+.-.+.|++..+-..+++.+..+...++..      .-...+
T Consensus        54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~  133 (266)
T 2of3_A           54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF  133 (266)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            33344566666666666555443221111  1223443333445889999999999888887665332      113568


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhH-
Q 015150          263 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL-  341 (412)
Q Consensus       263 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il-  341 (412)
                      +|.++.-+.|....||..+-..+..+....++    ..+++.+.+.+++.||+.|+.++..++.+.+..|..+  ...+ 
T Consensus       134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~  207 (266)
T 2of3_A          134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLS  207 (266)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGC
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccccc
Confidence            99999999999999999999998888776544    3477888888899999999999999999998888762  4567 


Q ss_pred             --HHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHH
Q 015150          342 --PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV  375 (412)
Q Consensus       342 --~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~  375 (412)
                        |.+.+++.|++.+||.+|+.++..++...|+..+
T Consensus       208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~  243 (266)
T 2of3_A          208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW  243 (266)
T ss_dssp             HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence              9999999999999999999999999998888643

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.23  E-value=8.5e-10  Score=94.13  Aligned_cols=171  Identities=18%  Similarity=0.129  Sum_probs=128.2

Q ss_pred             HHHHHHHHhhHHHhhhCh--hhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHhC---hhhhhhhhHHHHHhhhc-
Q 015150          238 VRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMIN-  310 (412)
Q Consensus       238 vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~~~-  310 (412)
                      -|..++..|..++.....  .......+|.++. +|+++++.||..|+.+++.++....   ...+....+|.|..++. 
T Consensus        56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~  135 (296)
T 1xqr_A           56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR  135 (296)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence            344555555555543321  1112235677888 9999999999999999999986321   11223468889999888 


Q ss_pred             CCchHHHHHHHHHHHHhccccch--h-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHHhhHHHHHH
Q 015150          311 NPHYLYRMTILQAISLLAPVMGS--E-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLV  384 (412)
Q Consensus       311 ~~~~~~r~~~~~~l~~l~~~~~~--~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~  384 (412)
                      +++..+|..++++++.++.....  + +.....+|.+..+++++++.+|..++++|+.++..-..   ......++|.|.
T Consensus       136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv  215 (296)
T 1xqr_A          136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV  215 (296)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence            45788999999999999865443  2 33457899999999999999999999999999865221   234567899999


Q ss_pred             hhcCCCCccHHHHHHHHHHHhHHh
Q 015150          385 ELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       385 ~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      .++.+++.+||..+..+++.+...
T Consensus       216 ~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          216 ALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHcCCChhHHHHHHHHHHHHHhC
Confidence            999999999999999999998764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.20  E-value=2.9e-08  Score=74.76  Aligned_cols=214  Identities=16%  Similarity=0.208  Sum_probs=150.8

Q ss_pred             HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh-cccChHHHHHHHHHHHHHHHhhchhhHHh
Q 015150          143 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQ  221 (412)
Q Consensus       143 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~i~~~~~~~~~~~  221 (412)
                      ..++..+..++.|.-|.|+..+...+..+++....-  .+.++.-+..++ +++.-..-....++++.++.. .++.+ .
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el--~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v-~  106 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL--YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELV-K  106 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHH-H
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHH-H
Confidence            346677777888888999999888888887654321  122222233332 344455556677888888765 34433 6


Q ss_pred             hHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhh
Q 015150          222 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  301 (412)
Q Consensus       222 ~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  301 (412)
                      .++|.+..-..-.++++|......+..++...+.  ....+..-+..++.+++..=|.+|+..++.+..+ +.++ ...+
T Consensus       107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~y-v~Pf  182 (253)
T 2db0_A          107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKY-VNPF  182 (253)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHH-HGGG
T ss_pred             hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Cccc-cCcc
Confidence            7778887766667899999999899888876532  2344555667888999888888887766554331 2222 3568


Q ss_pred             HHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      +|.+..++.|.+..+|..++++++.++..-++   ...++..-++-++|++.-|...+-..|+.+.
T Consensus       183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999865443   4556666677789999888888888888775

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=99.18  E-value=3.7e-10  Score=89.83  Aligned_cols=138  Identities=21%  Similarity=0.246  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHh-hccCCChHHHHHHHHHHHHHHHHhCCCCcc
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR  103 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~  103 (412)
                      .+.++++...+.+++.+++|..|+.+++.. .      ....+++.+.. +..|++|+||..++.+++.++...+.+   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            355667777777777777777777766665 2      12457777776 677777888877777777777543333   


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150          104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP  173 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  173 (412)
                       ..++.+...+.|++..||..|++.+..++.........+.++|.+..+..|++..||.++++.|..+++
T Consensus       139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK  207 (240)
T 3l9t_A          139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK  207 (240)
T ss_dssp             -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence             256677777777777777777777644443211122233466777777777777777777777777664

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1e-09  Score=93.65  Aligned_cols=183  Identities=11%  Similarity=0.070  Sum_probs=130.0

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHhhCHHHH-------HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhH---
Q 015150          110 YVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---  179 (412)
Q Consensus       110 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---  179 (412)
                      +.+-+.+.+|..|..|++.+..+.........       ...+.+.+.+.+.|.|..|...+++++..++..++...   
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            55677788888888888888776654332211       12245666777888888888888888887776554321   


Q ss_pred             -----HHHhhHHHHHH-hhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh
Q 015150          180 -----TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  253 (412)
Q Consensus       180 -----~~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~  253 (412)
                           ....++|.+.. .+.|..+.+|..+..++..++......   ..+++.+...+++++|++|..++.++..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                 22455666654 578888999999888888777654321   335666777889999999999999999999888


Q ss_pred             Chhh-----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChh
Q 015150          254 GVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  295 (412)
Q Consensus       254 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  295 (412)
                      |...     ..+.+++.+..++.|.++.||.+|...++.+...+|..
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            7543     23456677788899999999999999999999988864

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.15  E-value=2.2e-07  Score=92.62  Aligned_cols=405  Identities=7%  Similarity=0.019  Sum_probs=238.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---h---------------hh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---Q---------------DC   63 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~---------------~~   63 (412)
                      |.++.+.+.++..+++..-++. |+.+++.+...++.. +..+...+.+|..+.+...+   .               ..
T Consensus       126 ~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~  203 (1073)
T 3gjx_A          126 KVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE  203 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence            4567788888888887643333 666777766666543 44566777777777766321   0               01


Q ss_pred             hhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCC-cccchHHHH-HHhcCCChHHHHHHHHHHHHHHHHh-hCH-
Q 015150           64 VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAY-VRLLRDNEAEVRIAAAGKVTKICRI-LNP-  138 (412)
Q Consensus        64 ~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~-~~~-  138 (412)
                      .+.+++++...++ ..++.+...+.++++.+..-.+-+. ....+++.+ ..++++  +..|..|+++|..+... .++ 
T Consensus       204 ~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~~--~~~r~aA~dcL~eIv~k~~~~~  281 (1073)
T 3gjx_A          204 FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNV--PMFRNVSLKCLTEIAGVSVSQY  281 (1073)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSSS--HHHHHHHHHHHHHHHHSCSGGG
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcCC--hHHHHHHHHHHHHHHhccccch
Confidence            1235555555443 4567888889999998887665433 235688877 577764  67999999999998754 211 


Q ss_pred             -HHH---HHhhhhhHHHh-------------ccCCcHHHHHHHHHHHHhcCcccCh------h--HHHHhhHHHHHHhhc
Q 015150          139 -ELA---IQHILPCVKEL-------------SSDSSQHVRSALATVIMGMAPILGK------D--ATIEQLLPIFLSLLK  193 (412)
Q Consensus       139 -~~~---~~~~~~~l~~~-------------~~d~~~~vr~~~~~~l~~l~~~~~~------~--~~~~~l~~~l~~~l~  193 (412)
                       +.+   .+.++..+...             ..+.++..-...+..+..+++....      +  ......+..+..+..
T Consensus       282 ~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~  361 (1073)
T 3gjx_A          282 EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE  361 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC
Confidence             111   11111111111             1223333334444444444332111      1  111122333455555


Q ss_pred             ccChHHHHHHHHHHHHHHHhhchhh--------------------HHhhHHHHHHHH-------hc---------CCC-c
Q 015150          194 DEFPDVRLNIISKLDQVNQVIGIDL--------------------LSQSLLPAIVEL-------AE---------DRH-W  236 (412)
Q Consensus       194 d~~~~vr~~~~~~l~~i~~~~~~~~--------------------~~~~~~~~l~~~-------~~---------d~~-~  236 (412)
                      -++.++-+.+...+..+...+-.+.                    ....+.|.+.++       +.         ++. .
T Consensus       362 ~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge  441 (1073)
T 3gjx_A          362 VEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGE  441 (1073)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccch
Confidence            6678888888877777665542110                    111122222221       11         110 0


Q ss_pred             h------------HHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhChh---hhhh
Q 015150          237 R------------VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPD---WAMQ  299 (412)
Q Consensus       237 ~------------vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~---~~~~  299 (412)
                      .            .+...-.++..+. .++.......+.+.+.+.++.  .+|..+++++.++|.+...+.++   .+..
T Consensus       442 ~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          442 VVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence            0            1112222333333 344444555566666555443  46899999999999998766542   3445


Q ss_pred             hhHHHHHhhhcCC-----chHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150          300 HIVPQVLEMINNP-----HYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  373 (412)
Q Consensus       300 ~~l~~l~~~~~~~-----~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  373 (412)
                      .+++.+..+..++     ...++...+..+|+....+... .+.+.++..+++.+.|+++.|..+|+.++..+++.-+..
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777666443     4567777888999988776543 477888888999999999999999999999998765442


Q ss_pred             ----------HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhhC
Q 015150          374 ----------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       374 ----------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  411 (412)
                                .+.+.++..+.....+=+++-.....+|++.++...+.
T Consensus       601 lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~  648 (1073)
T 3gjx_A          601 FVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTD  648 (1073)
T ss_dssp             GTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCC
Confidence                      23344555555555666666667778888888776653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.14  E-value=5.6e-12  Score=94.45  Aligned_cols=122  Identities=16%  Similarity=0.165  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHH
Q 015150          259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS  338 (412)
Q Consensus       259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~  338 (412)
                      .+.-.+.+...|+|+++.+|..|+..|+.+    +..    . ++.+.+.++|+++.+|..++.+++.+..        +
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~   72 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRM----GDE----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------E   72 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSC----SST----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHh----Cch----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence            344666778888888888998888887653    222    1 4778888888889999999998888752        3


Q ss_pred             hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHh
Q 015150          339 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK  405 (412)
Q Consensus       339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  405 (412)
                      ..++.+...++|+++.||..++++|+.+..        ...+|.|..+++|+++.||..+..+++.|
T Consensus        73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            457777888888999999999999988763        35678888888899999999999888754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.13  E-value=3e-08  Score=78.07  Aligned_cols=222  Identities=12%  Similarity=0.074  Sum_probs=171.6

Q ss_pred             hhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh-hhH
Q 015150          183 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFF  258 (412)
Q Consensus       183 ~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~  258 (412)
                      ..+..+..+++|.++.++.+++..++.+.+..+.   ....+.++|.+..++.+++.++-..++.++..+....+. +..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            4567788889999999999999999999887432   233478899999999999999999999999999887642 223


Q ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHH
Q 015150          259 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS  338 (412)
Q Consensus       259 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~  338 (412)
                      ...+...+.....+++.-.+..|+..++.+    ..-.....+...+..++.+++.+++.+++.++..++...+......
T Consensus       113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~  188 (265)
T 3b2a_A          113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT  188 (265)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence            455788888889999999999999999887    2333356788888888899999999999999999987666555666


Q ss_pred             hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh-chH--HHHhhHHHHHHhhc-CCCCccHHHHHHHHHHHhHHh
Q 015150          339 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-DQS--VVEKSIRPCLVELS-EDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~-~~~--~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~~~  408 (412)
                      .++.-+-.+++.+++.++..++.++..+...- ..+  .-...+...+..+. --..+.+|..|......+-.+
T Consensus       189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~  262 (265)
T 3b2a_A          189 LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV  262 (265)
T ss_dssp             GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence            77777788888899999999999999887531 111  11234555566655 667788888887776666544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.13  E-value=2.1e-09  Score=95.48  Aligned_cols=255  Identities=12%  Similarity=0.086  Sum_probs=151.6

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL  146 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  146 (412)
                      +...+..-+-|++|.+|+.|+-+|.++.+..+......        .-.+.+-.+|-.++-+|.+|+.++++.       
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq-------  239 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR-------  239 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence            55556666678999999999999999998876432211        112225556666666665555543221       


Q ss_pred             hhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHH
Q 015150          147 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  226 (412)
Q Consensus       147 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~  226 (412)
                               .-..||++++++++.+ ..++.+   -.++..+...+....+++|.+++-.+.-+...+..   .+.+++.
T Consensus       240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a  303 (800)
T 3oc3_A          240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK  303 (800)
T ss_dssp             ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred             ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence                     2336777788887777 555544   23333333444566778887776666655332221   3666777


Q ss_pred             HHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHHhChhhhhhhhHHH
Q 015150          227 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ  304 (412)
Q Consensus       227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~  304 (412)
                      +...+.|.+..||..++.++..++   .++ ..+.++..+-..|.+  +-..--......|+.++..-........++|.
T Consensus       304 VL~GL~D~DDDVRAVAAetLiPIA---~p~-~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR  379 (800)
T 3oc3_A          304 LVSLLSSPDEDIKLLSAELLCHFP---ITD-SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD  379 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHTTSC---CSS-THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred             HHhhcCCcccHHHHHHHHHhhhhc---chh-hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence            777777877888888777776666   111 122233333333322  21222233344455555432211112478899


Q ss_pred             HHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHH-hhcCCCCchHHHHHHHHHH
Q 015150          305 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI-NASKDRVPNIKFNVAKVLQ  364 (412)
Q Consensus       305 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~-~~l~d~~~~vR~~~~~~l~  364 (412)
                      +..++.++-..||.+++.++..+.    .    ..++..+. +.+-+++++|+..+.++..
T Consensus       380 L~PFLRHtITSVR~AVL~TL~tfL----~----~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          380 IFPCFTSPVPEVRTSILNMVKNLS----E----ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             TGGGGTCSSHHHHHHHHHHTTTCC----C----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHHH----h----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999999999999999999988776    1    23333332 3345788888888887774

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.13  E-value=1.6e-09  Score=85.24  Aligned_cols=184  Identities=17%  Similarity=0.177  Sum_probs=152.3

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch---hhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC-C
Q 015150           26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-P  101 (412)
Q Consensus        26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~-~  101 (412)
                      +..+..+.+++.|+++.++..+..+++.+.+..++.   .....++|.+..+..+++.+|-..+++++..+....+-. .
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            346778888899999999999999999999987552   345668999999999999999999999999998765532 2


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHH
Q 015150          102 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI  181 (412)
Q Consensus       102 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  181 (412)
                      ....+...+...++++++-.+..+.+.++.+ +....   ...+...+.+++.+.+.+++.++..++.+++..-++....
T Consensus       112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~---~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~  187 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLED---SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL  187 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc---hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence            3356788889999999999999999999987 32221   2346778888888999999999999999999887766666


Q ss_pred             HhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          182 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       182 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                      +.++.-+..+++.+++.++..++.++..+...
T Consensus       188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            77888888999999999999999999998766

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.06  E-value=2e-07  Score=95.39  Aligned_cols=402  Identities=12%  Similarity=0.039  Sum_probs=225.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc-----hhh-----------hh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-----QDC-----------VA   65 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~-----~~~-----------~~   65 (412)
                      +.||.+++.++..+++...+ .-|+.+++.+..+++. ++..+..++.+|..+.+....     ...           .+
T Consensus       110 ~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~  187 (1204)
T 3a6p_A          110 NHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNME  187 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHH
Confidence            56899999999999987544 3478888888887766 445678888888888654211     001           11


Q ss_pred             hhHHHHHhhccC-------------------CChHHHHHHHHHHHHHHHHhCCCCc---ccchHHHHHHhcCCChHHHHH
Q 015150           66 HILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVGPEPT---RSDVVPAYVRLLRDNEAEVRI  123 (412)
Q Consensus        66 ~l~~~l~~l~~d-------------------~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~  123 (412)
                      .+++.+.+.+++                   ++..++..+++++.....-.+....   ...+++.+..++.+  +.+|.
T Consensus       188 ~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~  265 (1204)
T 3a6p_A          188 RIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQL  265 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHH
Confidence            344444444332                   2344666677766654432221111   12488888888776  57899


Q ss_pred             HHHHHHHHHHHhhC-HHHHHHhhhhh--------HHHhc--------cCCcHHHHHHHHHHHHhcCcccC----------
Q 015150          124 AAAGKVTKICRILN-PELAIQHILPC--------VKELS--------SDSSQHVRSALATVIMGMAPILG----------  176 (412)
Q Consensus       124 ~a~~~l~~l~~~~~-~~~~~~~~~~~--------l~~~~--------~d~~~~vr~~~~~~l~~l~~~~~----------  176 (412)
                      .|+++|..+..... ++... .++..        +....        .+.+..++...++.+..++..+-          
T Consensus       266 ~A~ecL~~i~s~~~~~~~~~-~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~  344 (1204)
T 3a6p_A          266 GAAECLLIAVSRKGKLEDRK-PLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVE  344 (1204)
T ss_dssp             HHHHHHHHHHTCCSCHHHHG-GGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHHhCCCChhhHH-HHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            99999999886433 22211 12221        12221        22345666666666655542211          


Q ss_pred             hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc--h-hh---HHhhHHHHHHHHh------cCC----------
Q 015150          177 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-DL---LSQSLLPAIVELA------EDR----------  234 (412)
Q Consensus       177 ~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~--~-~~---~~~~~~~~l~~~~------~d~----------  234 (412)
                      .......+++.+..+..+++..+-..+...+..+.+...  . +.   +...+++.+...+      .+.          
T Consensus       345 ~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~  424 (1204)
T 3a6p_A          345 TPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRF  424 (1204)
T ss_dssp             CCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhc
Confidence            111235778888888888888887777776666655432  1 11   2233334431100      100          


Q ss_pred             -----------CchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC-------------------------chhHHH
Q 015150          235 -----------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-------------------------KVYSIR  278 (412)
Q Consensus       235 -----------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-------------------------~~~~vr  278 (412)
                                 .+..|......+..++...+. ...+.+.+.+...+.+                         +.+...
T Consensus       425 D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~-~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  503 (1204)
T 3a6p_A          425 DFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK-TSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQW  503 (1204)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHH
Confidence                       123466666666666554432 2233344444333322                         223344


Q ss_pred             HHHHHHHHHHHHHh---C-hhhhhhhhHHHHHhhh---cCCchHHHHHHHHHHHHhccccchh-HHHHhhHHHHHhhcCC
Q 015150          279 DAAANNVKRLAEEF---G-PDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKD  350 (412)
Q Consensus       279 ~~a~~~l~~l~~~~---~-~~~~~~~~l~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~il~~l~~~l~d  350 (412)
                      ++....+..+.+.+   . .+.....+++.++..+   +..++.+|...+.+++.+...+... .+...++..++..+.+
T Consensus       504 ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~  583 (1204)
T 3a6p_A          504 EAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTF  583 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhcc
Confidence            44444455444433   1 1111112455555542   3346789999999999988776643 3566677777766665


Q ss_pred             ------------CCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCC---CccHHHHHHHHHHHhHHhh
Q 015150          351 ------------RVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP---DVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       351 ------------~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~---~~~vr~~a~~al~~~~~~~  409 (412)
                                  .+.++|..++.++..++...++.  .+.+.+...+..++...   +..=+....+|+..++..+
T Consensus       584 ~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~  659 (1204)
T 3a6p_A          584 ETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQF  659 (1204)
T ss_dssp             CTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGG
T ss_pred             CCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccC
Confidence                        23479999999999998876653  23455566555544322   2445566667777765443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.05  E-value=3.1e-11  Score=90.42  Aligned_cols=122  Identities=16%  Similarity=0.232  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS  104 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~  104 (412)
                      ...-.+.+..+++|+++.+|..|+..++.+..    .    . .+.+..+++|+++.||..++.+|+.+..        .
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~   72 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------E   72 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence            33445566667788888888777777664432    1    1 3666777778888888888888877652        3


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhc
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGM  171 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l  171 (412)
                      ..++.+..+++|+++.||..++.+|+.+..        ...++.+..+++|+++.||..++.+++.+
T Consensus        73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            456777777778888888888888877652        23456677777777778888777776643

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.05  E-value=5.6e-07  Score=92.14  Aligned_cols=404  Identities=13%  Similarity=0.043  Sum_probs=229.4

Q ss_pred             chhHHHHHHHHHHHHHH----hhh---hhhHHHHHHHHHHhcc---CCchHHHHHHHHhHHHHhhccCchhhhhhhHHHH
Q 015150            2 PMVRRSAATNLGKFAAT----VEA---AHLKSEIMSIFEELTQ---DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVI   71 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~----~~~---~~~~~~l~~~l~~l~~---~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l   71 (412)
                      +.||..++..|.+.++.    ++.   ..+.+.+++.+.....   ++...+|...+.++..++..--++ .++.+++.+
T Consensus        61 ~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-~Wp~ll~~L  139 (1204)
T 3a6p_A           61 AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-HWPDMLIEL  139 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-cchHHHHHH
Confidence            57899999999888764    222   2345556666544322   145778999999999999874343 467888888


Q ss_pred             HhhccCCChHHHHHHHHHHHHHHHHhCC-CCc---------------ccchHHHHHHhcCC-------------------
Q 015150           72 VNFSQDKSWRVRYMVANQLYELCEAVGP-EPT---------------RSDVVPAYVRLLRD-------------------  116 (412)
Q Consensus        72 ~~l~~d~~~~vR~~~~~~l~~l~~~~~~-~~~---------------~~~l~~~l~~~l~d-------------------  116 (412)
                      .++++. +...+..++..|..+.+.... +..               .+++++.+...+.+                   
T Consensus       140 ~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~  218 (1204)
T 3a6p_A          140 DTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQ  218 (1204)
T ss_dssp             HHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHH
T ss_pred             HHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence            888765 556788899999988765321 110               11345555544433                   


Q ss_pred             ChHHHHHHHHHHHHHHHHhhCHHHHHH---hhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh-hHH---HHhh----H
Q 015150          117 NEAEVRIAAAGKVTKICRILNPELAIQ---HILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DAT---IEQL----L  185 (412)
Q Consensus       117 ~~~~vr~~a~~~l~~l~~~~~~~~~~~---~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-~~~---~~~l----~  185 (412)
                      ++..++..+++++..+....+...+.+   .+++.+..++.+  +.+|..+++++..++..-.+ +..   ...+    +
T Consensus       219 ~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l  296 (1204)
T 3a6p_A          219 ANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAM  296 (1204)
T ss_dssp             HHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHH
Confidence            234577778888877766666554433   277777776664  67899999999998864322 111   1111    1


Q ss_pred             HHHHHhh--------cccChHHHHHHHHHHHHHHHhhc----------hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhh
Q 015150          186 PIFLSLL--------KDEFPDVRLNIISKLDQVNQVIG----------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  247 (412)
Q Consensus       186 ~~l~~~l--------~d~~~~vr~~~~~~l~~i~~~~~----------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~  247 (412)
                      ..+....        .|++.++++...+.+..++..+.          .......+++.+..+..+++..+-..++..+.
T Consensus       297 ~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~  376 (1204)
T 3a6p_A          297 HYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWG  376 (1204)
T ss_dssp             HHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHH
Confidence            1222222        23345666665555555442211          11123577888999988888777777777776


Q ss_pred             HHHhhhC--h-hh---HHHHHHHHHHH---Hhc---Cc--------------h-------hHHHHHHHHHHHHHHHHhCh
Q 015150          248 LLASQLG--V-GF---FDDKLGALCMQ---WLK---DK--------------V-------YSIRDAAANNVKRLAEEFGP  294 (412)
Q Consensus       248 ~l~~~~~--~-~~---~~~~l~~~l~~---~l~---d~--------------~-------~~vr~~a~~~l~~l~~~~~~  294 (412)
                      .+.+...  . +.   +...+++.+..   -+.   +.              +       .+.|......+..++... +
T Consensus       377 ~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~-p  455 (1204)
T 3a6p_A          377 ALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD-P  455 (1204)
T ss_dssp             HHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC-H
T ss_pred             HHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC-H
Confidence            6655432  1 11   33445555522   111   00              0       123444444444444332 2


Q ss_pred             hhhhhhhHHHHHhhhc-------------------------CCchHHHHHHHHHHHHhccccch----hHHHHhhHHHHH
Q 015150          295 DWAMQHIVPQVLEMIN-------------------------NPHYLYRMTILQAISLLAPVMGS----EITCSQLLPVVI  345 (412)
Q Consensus       295 ~~~~~~~l~~l~~~~~-------------------------~~~~~~r~~~~~~l~~l~~~~~~----~~~~~~il~~l~  345 (412)
                      ......+.+.+...+.                         ++.|...++....+..+...+..    +.....+.|.++
T Consensus       456 ~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll  535 (1204)
T 3a6p_A          456 KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELL  535 (1204)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence            2122222233322111                         23466677766666666544311    111112344444


Q ss_pred             hhc---CCCCchHHHHHHHHHHHHhhhhchH-HHHhhHHHHHHhhcCC------------CCccHHHHHHHHHHHhHHhh
Q 015150          346 NAS---KDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSED------------PDVDVRFFATQALQSKDQVM  409 (412)
Q Consensus       346 ~~l---~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d------------~~~~vr~~a~~al~~~~~~~  409 (412)
                      ..+   +..+|.+|...+.+++.+...+... .+...++..+...+.|            .+.+||..|+.++..++..+
T Consensus       536 ~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~  615 (1204)
T 3a6p_A          536 QMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY  615 (1204)
T ss_dssp             HHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence            432   3457889999999998887765432 2334444544443334            24589999999999998876


Q ss_pred             h
Q 015150          410 M  410 (412)
Q Consensus       410 ~  410 (412)
                      +
T Consensus       616 ~  616 (1204)
T 3a6p_A          616 P  616 (1204)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.86  E-value=7.4e-08  Score=76.75  Aligned_cols=139  Identities=16%  Similarity=0.123  Sum_probs=103.2

Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH-hcCCChHHHHHHHHHHHHHHHHhhCHHHHH
Q 015150           64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR-LLRDNEAEVRIAAAGKVTKICRILNPELAI  142 (412)
Q Consensus        64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  142 (412)
                      ...+++++..+.+|+...||..++..|+.. .      ...++++.+.. +..|+.+.||..+..+++.++...+++   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            456888888888888889998888877766 2      12668888887 778888999998888888888644443   


Q ss_pred             HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          143 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       143 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                       ..++.+...+.|++..||+.+.+..-..+.........+.++|.+..+..|++..||++...+|..+.+.
T Consensus       139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence             2567777888888999998888775332222112223456788888888888888888888888887765

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.75  E-value=1.2e-06  Score=86.77  Aligned_cols=347  Identities=10%  Similarity=0.037  Sum_probs=199.8

Q ss_pred             hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccC---c---hhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHH--
Q 015150           22 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE---P---QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYE--   92 (412)
Q Consensus        22 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~---~---~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~--   92 (412)
                      +...+.+.+.+..+..|++.....+|+++++.+.....   .   +..+..+.|++...+. +-+++....=..++.-  
T Consensus       503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~  582 (997)
T 1vsy_5          503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLP  582 (997)
T ss_dssp             CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence            45567788888999888887777788899998887532   2   3455668888777666 2222111111111111  


Q ss_pred             ----------HHHHh---------CCCC-----------------------cccchHHHHHHhcCCChHHHHHHHHHHHH
Q 015150           93 ----------LCEAV---------GPEP-----------------------TRSDVVPAYVRLLRDNEAEVRIAAAGKVT  130 (412)
Q Consensus        93 ----------l~~~~---------~~~~-----------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  130 (412)
                                +.+.+         +.+.                       ....++..+.  ++++...||+.....|.
T Consensus       583 ~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~  660 (997)
T 1vsy_5          583 AVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLT  660 (997)
T ss_dssp             HHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHH
T ss_pred             cCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHH
Confidence                      11111         0000                       0122333333  67788999999999998


Q ss_pred             HHHHhhC------H----------------------HHHHHhhhhhHHHh---cc---C--C-----cHH--HHHHHHHH
Q 015150          131 KICRILN------P----------------------ELAIQHILPCVKEL---SS---D--S-----SQH--VRSALATV  167 (412)
Q Consensus       131 ~l~~~~~------~----------------------~~~~~~~~~~l~~~---~~---d--~-----~~~--vr~~~~~~  167 (412)
                      .+....-      .                      ..+.+.+...+.++   -.   +  +     +..  .-.+++..
T Consensus       661 ~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~w  740 (997)
T 1vsy_5          661 TLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYW  740 (997)
T ss_dssp             HHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHH
T ss_pred             HHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHH
Confidence            7765431      0                      11111111111111   00   1  0     111  12233333


Q ss_pred             HHhcCcccChhH---HH-HhhHHHHHHhhcccCh-HHHHH-HHHHHHHHHHhhchhhHHhhHHHHHHHHhc-CCCchHHH
Q 015150          168 IMGMAPILGKDA---TI-EQLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRL  240 (412)
Q Consensus       168 l~~l~~~~~~~~---~~-~~l~~~l~~~l~d~~~-~vr~~-~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~  240 (412)
                      +...........   +. ..++|.+.++.++++. ++... +...+..+....-.....+.++..+.+..+ +++| .|.
T Consensus       741 l~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~  819 (997)
T 1vsy_5          741 IKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTK  819 (997)
T ss_dssp             HHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHH
T ss_pred             HHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHH
Confidence            333322111110   11 1255555555555443 55544 444455554333233333556666666565 6899 999


Q ss_pred             HHHHHhhHHHhh----hChhhHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC----
Q 015150          241 AIIEYIPLLASQ----LGVGFFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN----  311 (412)
Q Consensus       241 ~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~----  311 (412)
                      .++..+..+.-.    ++.+ -...+...+..+|.|+. .+||+.|..+|+.++...+.......++..+.+.+..    
T Consensus       820 ~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~  898 (997)
T 1vsy_5          820 LQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYT  898 (997)
T ss_dssp             HHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccc
Confidence            998887766542    1332 23568888999999999 9999999999999997652322233455555544422    


Q ss_pred             --------CchHHHHHHHHHHHHhccccchh----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH
Q 015150          312 --------PHYLYRMTILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  373 (412)
Q Consensus       312 --------~~~~~r~~~~~~l~~l~~~~~~~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~  373 (412)
                              .+-..|-+++-.|+++...++-.    .+.+.++..|....+|+.+ ++.++-++++.+-.+..+.
T Consensus       899 ~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~  971 (997)
T 1vsy_5          899 SKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADT  971 (997)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTT
T ss_pred             cccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchh
Confidence                    11257889999999998777644    4777888888888888765 9999999999998766554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.61  E-value=4e-05  Score=67.61  Aligned_cols=256  Identities=15%  Similarity=0.153  Sum_probs=115.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHH
Q 015150            3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRV   82 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~v   82 (412)
                      ..++-|++.|..+.+.++.  ..+.-+..+..++.|++..+|..|++.|..+++.    +..+.+..++.++++..++..
T Consensus        43 k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E  116 (507)
T 3u0r_A           43 KEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAE  116 (507)
T ss_dssp             HHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHH
Confidence            3444555555555554432  2233334444445555555555555555555543    234455555555555544444


Q ss_pred             HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH----HHHHHhhhhhHHHhccCCcH
Q 015150           83 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQ  158 (412)
Q Consensus        83 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~  158 (412)
                      +..+-++|-.+...-.    ..-+...+.++.+ .++.+|..++.-|..-...++.    .+....+...+.+.++|-+.
T Consensus       117 ~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~  191 (507)
T 3u0r_A          117 FNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG  191 (507)
T ss_dssp             HHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred             HHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence            4444444444433110    0111111222222 2345565555555333222222    23344455555666655443


Q ss_pred             HHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhc-----c-cChHHHHHHHHHHHHHHHhhch----hhHH----hhHH
Q 015150          159 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-----D-EFPDVRLNIISKLDQVNQVIGI----DLLS----QSLL  224 (412)
Q Consensus       159 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d-~~~~vr~~~~~~l~~i~~~~~~----~~~~----~~~~  224 (412)
                      .-=......+..+- .++.....+.+++.+.....     + .+++.-...+.++......+..    ..+.    +.++
T Consensus       192 ~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIl  270 (507)
T 3u0r_A          192 EEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVL  270 (507)
T ss_dssp             HHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhc
Confidence            22233334443322 12222223566666665422     1 2455555555555555544432    2222    3334


Q ss_pred             HHHHHHhcC-CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHh
Q 015150          225 PAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  270 (412)
Q Consensus       225 ~~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  270 (412)
                      |.+..+-.. .....+...++.+..++...|........++.+...|
T Consensus       271 P~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L  317 (507)
T 3u0r_A          271 PNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL  317 (507)
T ss_dssp             GGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred             cchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence            433322221 1223677888899999988883333333444444433

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.55  E-value=0.0001  Score=68.11  Aligned_cols=304  Identities=16%  Similarity=0.193  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCC--
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP--  101 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~--  101 (412)
                      .+.+-.+..++.+..-.+=|+.|+..|..+++..+.+....-+-+++..+-+| .|..+-+.+++.|..+....+.+.  
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~   99 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE   99 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc
Confidence            33344444555555566668888888888887765442222233333334444 455666666777655543211100  


Q ss_pred             -------------------cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHH---HH--HhhhhhHHHhccCCc
Q 015150          102 -------------------TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AI--QHILPCVKELSSDSS  157 (412)
Q Consensus       102 -------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~~~~~l~~~~~d~~  157 (412)
                                         ..++-++.+..+++..+..+|..++++|..++..-+...   +.  ..-++.+..+++|+.
T Consensus       100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r  179 (651)
T 3grl_A          100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR  179 (651)
T ss_dssp             --------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS
T ss_pred             ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch
Confidence                               023568889999999999999999999999998765531   22  246788899999999


Q ss_pred             HHHHHHHHHHHHhcCcccC---hhHHHHhhHHHHHHhhcccCh----HHHHHHHHHHHHHHHhhc--hhhH-HhhHHHHH
Q 015150          158 QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVIG--IDLL-SQSLLPAI  227 (412)
Q Consensus       158 ~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~----~vr~~~~~~l~~i~~~~~--~~~~-~~~~~~~l  227 (412)
                      ..+|..++..+..+...-.   +-...+..++.+.+++..+..    .|...++..+..+.+.-.  ...+ ....+|.+
T Consensus       180 E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L  259 (651)
T 3grl_A          180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRM  259 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGG
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence            9999999999998875321   112224566777777776543    676777777777776532  1112 22345555


Q ss_pred             HHHhcC----CCchHHH--H---HHHHhhHHHhhhCh---------hhHHHHHHHHHHHHhcCc--hhHHHHHHHHHHHH
Q 015150          228 VELAED----RHWRVRL--A---IIEYIPLLASQLGV---------GFFDDKLGALCMQWLKDK--VYSIRDAAANNVKR  287 (412)
Q Consensus       228 ~~~~~d----~~~~vr~--~---~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~  287 (412)
                      ..+++.    ..|.-+.  .   ++..+..+...-+.         ..+...+++.+++++..+  ...++..|+.+++.
T Consensus       260 ~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~  339 (651)
T 3grl_A          260 KPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSE  339 (651)
T ss_dssp             GGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence            555542    2354222  1   22233333222121         112223556666665544  56799999999999


Q ss_pred             HHHHhCh--hhhh----------hhhHHHHHhhhcCC-chHHHHHHHHHHHHhc
Q 015150          288 LAEEFGP--DWAM----------QHIVPQVLEMINNP-HYLYRMTILQAISLLA  328 (412)
Q Consensus       288 l~~~~~~--~~~~----------~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~  328 (412)
                      ++.....  +.+.          ..++..++.+.++. ...+|.+++.++..+.
T Consensus       340 ~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          340 VIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             HHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            8864321  2221          12344445555543 4889999999998775

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.38  E-value=0.00028  Score=62.35  Aligned_cols=71  Identities=20%  Similarity=0.222  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhccccchhHH----HHhhHHHHHhhcC-CCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhh
Q 015150          316 YRMTILQAISLLAPVMGSEIT----CSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVEL  386 (412)
Q Consensus       316 ~r~~~~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l  386 (412)
                      ...++-.++..++...+...|    ..+++|.+-.+-. ++.+..+...++++..++...+..    ...+.+...|...
T Consensus       241 lI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~y  320 (507)
T 3u0r_A          241 LLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEY  320 (507)
T ss_dssp             HHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHH
Confidence            334444444444544444334    4455553332222 122347889999999999888732    2334444444443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.37  E-value=0.00013  Score=67.43  Aligned_cols=288  Identities=12%  Similarity=0.117  Sum_probs=169.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccC-CchHHHHHHHHhHHHHhhccCchh--------------------
Q 015150            4 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQD--------------------   62 (412)
Q Consensus         4 vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~i~~~~~~~~--------------------   62 (412)
                      =|++|+..|..+++.++.......+-+++..+-+| ++.++-+.+++.|..+...-..+.                    
T Consensus        38 DRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f  117 (651)
T 3grl_A           38 DRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIF  117 (651)
T ss_dssp             HHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHH
Confidence            48999999999988766433222233444444444 244555667777766554322110                    


Q ss_pred             -hhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC-----cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh
Q 015150           63 -CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL  136 (412)
Q Consensus        63 -~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  136 (412)
                       ....-++.+..+++..+..+|..+++.|..++..-+...     ..+.-++.++.+++|....+|..++..|..+.+.-
T Consensus       118 ~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n  197 (651)
T 3grl_A          118 IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN  197 (651)
T ss_dssp             HHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC
Confidence             123357778889999999999999999999987544321     12346888999999999999999999999998743


Q ss_pred             CHH---HHHHhhhhhHHHhccCCcH----HHHHHHHHHHHhcCccc--ChhHHH-HhhHHHHHHhhcccC----hH--HH
Q 015150          137 NPE---LAIQHILPCVKELSSDSSQ----HVRSALATVIMGMAPIL--GKDATI-EQLLPIFLSLLKDEF----PD--VR  200 (412)
Q Consensus       137 ~~~---~~~~~~~~~l~~~~~d~~~----~vr~~~~~~l~~l~~~~--~~~~~~-~~l~~~l~~~l~d~~----~~--vr  200 (412)
                      .+-   ...+..++.+..++..+..    .|-.-+...+..+...-  ....+. ...+|.+..+++.++    |.  ..
T Consensus       198 ~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~  277 (651)
T 3grl_A          198 GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKV  277 (651)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHH
Confidence            221   2234466777766654332    45455556666665432  122222 244566666665322    11  22


Q ss_pred             HHHHHHHHHHHHhhch------------hhHHhhHHHHHHHHhcCC--CchHHHHHHHHhhHHHhhhCh--hhH------
Q 015150          201 LNIISKLDQVNQVIGI------------DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGV--GFF------  258 (412)
Q Consensus       201 ~~~~~~l~~i~~~~~~------------~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~--~~~------  258 (412)
                      .++...+.-+.-.+.+            ......+++.+.+++...  ...+|..++.+++.+......  +.+      
T Consensus       278 ~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp  357 (651)
T 3grl_A          278 TNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAP  357 (651)
T ss_dssp             HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEES
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCC
Confidence            2211122222111111            112344667777776554  457888888888877654321  111      


Q ss_pred             ----HHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHH
Q 015150          259 ----DDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEE  291 (412)
Q Consensus       259 ----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~  291 (412)
                          .+.++..++.++++. ...+|.+|+.++..+...
T Consensus       358 ~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~  395 (651)
T 3grl_A          358 SNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK  395 (651)
T ss_dssp             SSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             CCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence                123455556666554 477999999999887743

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.36  E-value=0.00061  Score=65.59  Aligned_cols=148  Identities=9%  Similarity=0.017  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--hhhhh-hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP  101 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~-l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~  101 (412)
                      ...++|++.. ++++++..|..|+.++..++..-...  ..... +.+++..++.|++..||.+++.+|.+++...+.+.
T Consensus        33 ~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           33 EDKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            3457888876 67788899999999999998632111  12223 45567788999999999999999999987655332


Q ss_pred             ----cccchHHHHHHhcCCCh---------------------HHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhc
Q 015150          102 ----TRSDVVPAYVRLLRDNE---------------------AEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS  153 (412)
Q Consensus       102 ----~~~~l~~~l~~~l~d~~---------------------~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~  153 (412)
                          ....+++.+..+++...                     +.+-..++.+|..+++.-...   ......+|.+...+
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence                33456666666543211                     123334555666665543221   11223455555544


Q ss_pred             c---CCcHHHHHHHHHHHHhcCc
Q 015150          154 S---DSSQHVRSALATVIMGMAP  173 (412)
Q Consensus       154 ~---d~~~~vr~~~~~~l~~l~~  173 (412)
                      .   .....++.++++++..+.+
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~  214 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSE  214 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhc
Confidence            2   2346788888888887654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.31  E-value=0.0001  Score=59.99  Aligned_cols=183  Identities=16%  Similarity=0.080  Sum_probs=104.0

Q ss_pred             HHHHHHHhcCCCc--hHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHh-Ch--h
Q 015150          224 LPAIVELAEDRHW--RVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GP--D  295 (412)
Q Consensus       224 ~~~l~~~~~d~~~--~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~--~  295 (412)
                      +|.+.+++.++++  .++..++..+..++..-..   .......+|.+.++|++++..+++.|+.+|..+...- ..  .
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4555566665555  5555555555555432211   1112234577777777777777777777777766421 11  1


Q ss_pred             hhhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccch-hHHHHhhHHHHHhhcC----------------CCCchHHH
Q 015150          296 WAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASK----------------DRVPNIKF  357 (412)
Q Consensus       296 ~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~il~~l~~~l~----------------d~~~~vR~  357 (412)
                      ......+|.+.+++. .+++.+++.++.+|..++..-.. ..+.+.-+|.|.+.+.                ..++.|+.
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~  169 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY  169 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence            112346677777776 35667777777677666543222 1233344565555431                12568999


Q ss_pred             HHHHHHHHHhhhhch--HHHH--hhHHHHHHhhc------CCCCccHHHHHHHHHHHhH
Q 015150          358 NVAKVLQSLIPIVDQ--SVVE--KSIRPCLVELS------EDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       358 ~~~~~l~~l~~~~~~--~~~~--~~i~~~l~~l~------~d~~~~vr~~a~~al~~~~  406 (412)
                      .+..+|..++..-..  ....  ..+++.|..++      .+++...+.++..+|..+.
T Consensus       170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs  228 (233)
T 3tt9_A          170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS  228 (233)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence            999999999753111  1111  23555555542      4567788899999888764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.20  E-value=6.4e-05  Score=61.21  Aligned_cols=126  Identities=15%  Similarity=0.081  Sum_probs=87.8

Q ss_pred             cchHHHHHHhcCCChH--HHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCccc--C
Q 015150          104 SDVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL--G  176 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~  176 (412)
                      .-.+|.+.+++.++++  .++..|+..+..++..-++   .......+|.+.+++..+++.++..++.++..++..-  .
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            3457888898887776  8888888888887754322   2334457899999999999999999999999997521  1


Q ss_pred             hhH-HHHhhHHHHHHhhcc-cChHHHHHHHHHHHHHHHhhc-hhhHHhhHHHHHHH
Q 015150          177 KDA-TIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVE  229 (412)
Q Consensus       177 ~~~-~~~~l~~~l~~~l~d-~~~~vr~~~~~~l~~i~~~~~-~~~~~~~~~~~l~~  229 (412)
                      +.. ....-+|.+.+++.+ .+.+++..++.+|..+...-. ...+....+|.+.+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~  142 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTE  142 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHH
Confidence            111 224678999999974 688999999888887764321 22222334555544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.08  E-value=0.0017  Score=62.49  Aligned_cols=149  Identities=17%  Similarity=0.164  Sum_probs=92.3

Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCC--CcccchH-HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH-
Q 015150           64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVV-PAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-  139 (412)
Q Consensus        64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-  139 (412)
                      .+.++|++.. ++++++..|..++.+|+.++..-...  .....++ +.+..++.|++.+||..|+.+|..++..-+.+ 
T Consensus        33 ~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           33 EDKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            3468887765 67889999999999999998521111  1223444 55677899999999999999999998776654 


Q ss_pred             ---HHHHhhhhhHHHhccCC--------------c-------HHHHHHHHHHHHhcCcccCh---hHHHHhhHHHHHHhh
Q 015150          140 ---LAIQHILPCVKELSSDS--------------S-------QHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLL  192 (412)
Q Consensus       140 ---~~~~~~~~~l~~~~~d~--------------~-------~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l  192 (412)
                         .+...+++.+..++...              .       +.+...++..+..++..-..   .......+|.+...+
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence               23344666665543211              1       11222334444444432211   111234556666655


Q ss_pred             cc---cChHHHHHHHHHHHHHHHh
Q 015150          193 KD---EFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       193 ~d---~~~~vr~~~~~~l~~i~~~  213 (412)
                      .+   ...+++..++.+|..+...
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~d  215 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSED  215 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhcc
Confidence            33   2367999999998887654

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=97.96  E-value=0.0015  Score=65.03  Aligned_cols=379  Identities=7%  Similarity=-0.046  Sum_probs=198.9

Q ss_pred             hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHh----hccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHh
Q 015150           22 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG----KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV   97 (412)
Q Consensus        22 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~----~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~   97 (412)
                      +.++..+...+.+- ++.++.-+..-+..+..+.    +.++ +...+.+.+.+..+..|.+..-...+++.++-+....
T Consensus       462 ~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn~~-~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gs  539 (997)
T 1vsy_5          462 REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSGFC-ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGS  539 (997)
T ss_dssp             HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTTTC-CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcc
Confidence            34555555554321 1222222333344444444    3344 3467889999999999988888999999998887643


Q ss_pred             CCC------CcccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHH------------------------------H
Q 015150           98 GPE------PTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE------------------------------L  140 (412)
Q Consensus        98 ~~~------~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~------------------------------~  140 (412)
                      ..-      ..++.+.|.+...+. +-.++....-..++..+....++.                              .
T Consensus       540 K~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~  619 (997)
T 1vsy_5          540 KFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIY  619 (997)
T ss_dssp             SSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence            321      134567888888877 455444444433333332221110                              0


Q ss_pred             H--------------HHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC----------------------------hh
Q 015150          141 A--------------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----------------------------KD  178 (412)
Q Consensus       141 ~--------------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----------------------------~~  178 (412)
                      .              ...++..+.  +.++...||..+...+..+....-                            .+
T Consensus       620 ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  697 (997)
T 1vsy_5          620 MLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPE  697 (997)
T ss_dssp             HHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCH
T ss_pred             HHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcc
Confidence            0              011122222  577889999999988876543220                            01


Q ss_pred             HHHHhhHHHHHHhh---c---c--cChHHHHHH---HHHHH-HHHHhhchh------hHHhh-HHHHHHHHhcCCCc-hH
Q 015150          179 ATIEQLLPIFLSLL---K---D--EFPDVRLNI---ISKLD-QVNQVIGID------LLSQS-LLPAIVELAEDRHW-RV  238 (412)
Q Consensus       179 ~~~~~l~~~l~~~l---~---d--~~~~vr~~~---~~~l~-~i~~~~~~~------~~~~~-~~~~l~~~~~d~~~-~v  238 (412)
                      ...+.+...+.++-   .   +  +....+...   .+.+- .+...++..      .+... ++|.+..+.++++- +.
T Consensus       698 ~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL  777 (997)
T 1vsy_5          698 KVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCAL  777 (997)
T ss_dssp             HHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHH
Confidence            11111211221111   0   0  010111111   11111 111111111      01112 55555555554433 22


Q ss_pred             HHH-HHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHh----ChhhhhhhhHHHHHhhhcCC
Q 015150          239 RLA-IIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEF----GPDWAMQHIVPQVLEMINNP  312 (412)
Q Consensus       239 r~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~l~~l~~~~~~~  312 (412)
                      ... +..++..++...-.....+.++..+.+..+ +++| +|..++..+..+.-..    +.+ -...+...+..++.|+
T Consensus       778 ~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~  855 (997)
T 1vsy_5          778 ASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNE  855 (997)
T ss_dssp             TTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCS
T ss_pred             HhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCC
Confidence            222 223333333322222233334444444444 5788 9999988887766421    222 2356888889999999


Q ss_pred             c-hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC--CC----------chHHHHHHHHHHHHhhhhch----HHH
Q 015150          313 H-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD--RV----------PNIKFNVAKVLQSLIPIVDQ----SVV  375 (412)
Q Consensus       313 ~-~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d--~~----------~~vR~~~~~~l~~l~~~~~~----~~~  375 (412)
                      . ..||+.|..+|+.+....+.......++..+.+.+..  ..          ...|-+++-.|+.+...+.=    +..
T Consensus       856 q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w  935 (997)
T 1vsy_5          856 QFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPW  935 (997)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcc
Confidence            9 9999999999999976541311223444444444422  01          13455566666666655421    335


Q ss_pred             HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          376 EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       376 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      .+.++..|....+||.+ |+..+.++++.+-+
T Consensus       936 ~P~~l~~La~~~~~~~~-i~~tvk~tlseFkr  966 (997)
T 1vsy_5          936 IPKNLSNLSSWARTSGM-TGNAAKNTISEFKK  966 (997)
T ss_dssp             HHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence            56677777777888776 99999999988764

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.59  E-value=0.0057  Score=61.82  Aligned_cols=134  Identities=11%  Similarity=0.000  Sum_probs=83.8

Q ss_pred             hHHHHHHHHhcC----CCchHHHHHHHHhhHHHhhhC------hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 015150          222 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  291 (412)
Q Consensus       222 ~~~~~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  291 (412)
                      .++..+..++++    .++.+|..++-+++.++....      .....+.+...+.+.+...+.+-+..++++||.+.. 
T Consensus       391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-  469 (1056)
T 1lsh_A          391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-  469 (1056)
T ss_dssp             HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence            344555555544    456788888888887776441      112234566666666777777778888888887653 


Q ss_pred             hChhhhhhhhHHHHHhhhc-------CCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHH
Q 015150          292 FGPDWAMQHIVPQVLEMIN-------NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ  364 (412)
Q Consensus       292 ~~~~~~~~~~l~~l~~~~~-------~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~  364 (412)
                             ...++.+.+++.       +...++|.+|+.++..+....+ +.+.+.+++.+.+  .+..+++|.+|+..|-
T Consensus       470 -------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-~~v~~il~~i~~n--~~e~~EvRiaA~~~Lm  539 (1056)
T 1lsh_A          470 -------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-RKVQEIVLPIFLN--VAIKSELRIRSCIVFF  539 (1056)
T ss_dssp             -------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-HHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred             -------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-HHHHHHHHHHhcC--CCCChHHHHHHHHHHH
Confidence                   224455555542       2235789999999999874322 1233344444433  4567899999998886


Q ss_pred             HH
Q 015150          365 SL  366 (412)
Q Consensus       365 ~l  366 (412)
                      ..
T Consensus       540 ~t  541 (1056)
T 1lsh_A          540 ES  541 (1056)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.36  E-value=0.0076  Score=60.91  Aligned_cols=225  Identities=10%  Similarity=0.016  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh-CHHHHHHhhhhhHHHhccCCcH
Q 015150           80 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPELAIQHILPCVKELSSDSSQ  158 (412)
Q Consensus        80 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~~~~d~~~  158 (412)
                      ...|....++|+..+.        ..-+..+.+++.+.+-...+ |...+....... +.....+.+.+++..--...++
T Consensus       339 ~~~r~~~lDal~~aGT--------~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~  409 (1056)
T 1lsh_A          339 KDYRRWILDAVPAMAT--------SEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRP  409 (1056)
T ss_dssp             HHHHHHHHHHHHHHCS--------HHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCH
T ss_pred             HHHHHHHHHHhHhcCC--------HHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCH
Confidence            5567766666666543        23445555555543322222 444444332222 2222332232222221122567


Q ss_pred             HHHHHHHHHHHhcCcccC------hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhc
Q 015150          159 HVRSALATVIMGMAPILG------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  232 (412)
Q Consensus       159 ~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~  232 (412)
                      .+|.++.-+++.++....      .....+.+...+.+.+...+.+-+..++++|+.++.-        ..++.+.+++.
T Consensus       410 ~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--------~~l~~l~~~l~  481 (1056)
T 1lsh_A          410 ILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--------NSIKKIQRFLP  481 (1056)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--------GGHHHHHTTST
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--------hHHHHHHHhhc
Confidence            889988888888764321      1112344555555566666777778888888888642        23455555543


Q ss_pred             -------CCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHhChhhhhhhhHH
Q 015150          233 -------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP  303 (412)
Q Consensus       233 -------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~  303 (412)
                             +...++|.+++.+|..+....     ...+.+++++..  .+.+.++|.+|+..|-..   ...    ...+.
T Consensus       482 ~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~----~~~l~  549 (1056)
T 1lsh_A          482 GQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVFFES---KPS----VALVS  549 (1056)
T ss_dssp             TSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCC----HHHHH
T ss_pred             CccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH---CcC----HHHHH
Confidence                   223578999999998887532     223555556656  456788999998776321   111    12233


Q ss_pred             HHHhhh-cCCchHHHHHHHHHHHHhccccch
Q 015150          304 QVLEMI-NNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       304 ~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      .+...+ .+++.+++......+..++..-.+
T Consensus       550 ~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          550 MVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            333322 346677777777777777655433

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=97.22  E-value=0.065  Score=44.07  Aligned_cols=160  Identities=16%  Similarity=0.146  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCccc
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS  104 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~  104 (412)
                      .+.+..++.+.-...+ ..+...+.-...++-.-.+. ..+.+++-++.+..|++..+|+.++..+...+..  +.....
T Consensus        14 ~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~   89 (257)
T 3gs3_A           14 RAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLP   89 (257)
T ss_dssp             HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHH
T ss_pred             HHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            4556666665555444 36655555555555443344 6788888888888899999999999999988843  233445


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCcccChhHHHHh
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDATIEQ  183 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  183 (412)
                      ..++.+..+++|+++.|-+.++.+...+-+             .+.+.+ .+++..-  ..-.++..+          ..
T Consensus        90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~-------------~~l~~i~~~~~~~~--~~~~~W~~m----------~~  144 (257)
T 3gs3_A           90 HVINVVSMLLRDNSAQVIKRVIQACGSIYK-------------NGLQYLCSLMEPGD--SAEQAWNIL----------SL  144 (257)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH-------------HHHHHHTTSSSCCH--HHHHHHHHH----------HH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------------HHHHHHhcCCCCcc--hHHHHHHHH----------HH
Confidence            678888889999999999999988876433             333222 2221100  011111111          12


Q ss_pred             hHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                      +...+.+..+..+..+|..+++.+..+...
T Consensus       145 lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~  174 (257)
T 3gs3_A          145 IKAQILDMIDNENDGIRTNAIKFLEGVVVL  174 (257)
T ss_dssp             HHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence            333444455556777888888887777643

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.95  E-value=0.12  Score=42.58  Aligned_cols=130  Identities=12%  Similarity=0.097  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchH
Q 015150          276 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNI  355 (412)
Q Consensus       276 ~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~v  355 (412)
                      +.+-..+....+++-.-.+ .+.+.+++.++.+..+++..+|...+..+...+..  ...+...+++.+..+++|+++.|
T Consensus        30 ~~kl~~L~qa~el~~~~dp-~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V  106 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCA-ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV  106 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHHccCH-hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence            3455555555554432222 24566666666666666677777777776665521  22355666777777777777777


Q ss_pred             HHHHHHHHHHHhhhh-------ch-----HH---HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          356 KFNVAKVLQSLIPIV-------DQ-----SV---VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       356 R~~~~~~l~~l~~~~-------~~-----~~---~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      .+.++.+.+.+++..       +.     +.   ....+...+.......+..||.++.+.+..+...
T Consensus       107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~  174 (257)
T 3gs3_A          107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL  174 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence            777777666665432       00     11   1133444444555556788999999999988743

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.75  E-value=0.25  Score=43.13  Aligned_cols=251  Identities=18%  Similarity=0.176  Sum_probs=122.6

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhh
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL  184 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  184 (412)
                      .++..+.+.-...+ ..|-..+.-+..+.-+-.+ .....++|.+..+..|++..||..++..+.+.+..  +.......
T Consensus        26 ~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~  101 (386)
T 3o2t_A           26 RVVDLLNQAALITN-DSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKL  101 (386)
T ss_dssp             HHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred             HHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            34444443333232 2344444444443333222 23345556666666666666666666666655431  12223455


Q ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCc-hHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150          185 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFDDKLG  263 (412)
Q Consensus       185 ~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~  263 (412)
                      ++.+..+++|+++.|.+.++.+.+.+-+.         ++..+.   ++++. ..-.   ..+..          ...+.
T Consensus       102 l~~L~~LL~d~d~~V~K~~I~~~tslYpl---------~f~~i~---~~~~~~~~~e---~~W~~----------m~~lK  156 (386)
T 3o2t_A          102 IANLNMLLRDENVNVVKKAILTMTQLYKV---------ALQWMV---KSRVISELQE---ACWDM----------VSAMA  156 (386)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHH---------HHHHHH---HC-CCCHHHH---HHHHH----------HHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHH---------HHHHHh---cCCCcchhHH---HHHHH----------HHHHH
Confidence            55566666666666666666555544211         111111   11110 0000   01111          12233


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHhChh------------h--------------------hhhhhHHHHHhhhcC
Q 015150          264 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD------------W--------------------AMQHIVPQVLEMINN  311 (412)
Q Consensus       264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------------~--------------------~~~~~l~~l~~~~~~  311 (412)
                      ..++..+...+..||..+++.+..++......            .                    -...++..++..+.+
T Consensus       157 ~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~  236 (386)
T 3o2t_A          157 GDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVH  236 (386)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcc
Confidence            44555667778889999999888887544210            0                    012366667776665


Q ss_pred             C--chHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCC--------CchHHHHHHHHHHHHhhhhchHHHHhhHHH
Q 015150          312 P--HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQSVVEKSIRP  381 (412)
Q Consensus       312 ~--~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--------~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~  381 (412)
                      +  +...-.+++.+++.++..=+  .+...+++.+..+-...        ...||+..--.|..+.+.-....+...|..
T Consensus       237 ~~iss~~l~a~lnsLa~Iak~RP--~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~  314 (386)
T 3o2t_A          237 PAISSINLTTALGSLANIARQRP--MFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITT  314 (386)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHH
Confidence            3  23344566666666654221  36777888777653211        122444444455555443333345566666


Q ss_pred             HHHhh
Q 015150          382 CLVEL  386 (412)
Q Consensus       382 ~l~~l  386 (412)
                      .|..+
T Consensus       315 ~L~~L  319 (386)
T 3o2t_A          315 LLVDL  319 (386)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            66554

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.08  E-value=0.66  Score=40.56  Aligned_cols=104  Identities=19%  Similarity=0.259  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccc
Q 015150           26 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD  105 (412)
Q Consensus        26 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  105 (412)
                      +.+..++.+.-...+ ..+...+.-...++-+-.+ .....+++.++++..|++..+|+.++..|++.+..  .......
T Consensus        25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~  100 (386)
T 3o2t_A           25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLK  100 (386)
T ss_dssp             HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            445555544433222 2455455555554443333 36778999999999999999999999999988863  2223466


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKIC  133 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~  133 (412)
                      +++.+..+++|+++.|-+.++.+...+-
T Consensus       101 ~l~~L~~LL~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          101 LIANLNMLLRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            7888888999999999999998887653

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=95.80  E-value=0.36  Score=37.63  Aligned_cols=111  Identities=10%  Similarity=0.055  Sum_probs=71.1

Q ss_pred             CchHHHHHHHHhhHHHhhh--ChhhHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHHhCh--hhhhhhhHHHHHh
Q 015150          235 HWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKD---KVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLE  307 (412)
Q Consensus       235 ~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~  307 (412)
                      ++..-...+.....+...-  .-+.+..+++|.++.++-.   ....+|+.|+..++.++..++.  ..+...+...+.+
T Consensus        59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k  138 (196)
T 4atg_A           59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG  138 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence            3443333444444444322  2345667788888877521   1127999999999999999876  3445667777777


Q ss_pred             hhcCCc--hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcC
Q 015150          308 MINNPH--YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK  349 (412)
Q Consensus       308 ~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~  349 (412)
                      .+.|++  ...+-.|+..+..+    |.+.+..-++|.+-.+.+
T Consensus       139 ~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP~l~~~~~  178 (196)
T 4atg_A          139 VWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIREHAEEYKR  178 (196)
T ss_dssp             HHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHHHHHHHHH
T ss_pred             HHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhcCHHHHHH
Confidence            777754  66677777777765    455555566677766554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.66  E-value=0.86  Score=38.66  Aligned_cols=208  Identities=12%  Similarity=0.125  Sum_probs=128.2

Q ss_pred             HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh------hH--HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150          181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  252 (412)
Q Consensus       181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~------~~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  252 (412)
                      ...++..+...+..=+.+.|+.+...+..+.+.-..+      -+  .+.++..+....++++...-.+.  .+-..++.
T Consensus        76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir~  153 (341)
T 1upk_A           76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRH  153 (341)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTS
T ss_pred             HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHHh
Confidence            4566777777777777788888777777665432110      00  24556666666665553322221  11111110


Q ss_pred             --hChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhh---hhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150          253 --LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMTILQAI  324 (412)
Q Consensus       253 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~~l  324 (412)
                        +....+.....--+.++...++-+|-.-|+.++..+.....   .+++   .+.++....+++.++++.+|..++..|
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL  233 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  233 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence              00000111111235577888999999999999988875421   1222   235667777889999999999999999


Q ss_pred             HHhccccchhH------HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhh--chH------HHHhhHHHHHHhhcCCC
Q 015150          325 SLLAPVMGSEI------TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV--DQS------VVEKSIRPCLVELSEDP  390 (412)
Q Consensus       325 ~~l~~~~~~~~------~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~--~~~------~~~~~i~~~l~~l~~d~  390 (412)
                      |.+..--....      -...-+..+..+|+|++.+++..|..++..+...=  .++      .-.+.++..+.....|+
T Consensus       234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~  313 (341)
T 1upk_A          234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  313 (341)
T ss_dssp             HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99863222211      13346778889999999999999999888775421  111      12357888888888877

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=95.46  E-value=0.35  Score=38.85  Aligned_cols=131  Identities=6%  Similarity=-0.026  Sum_probs=91.2

Q ss_pred             HHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 015150           30 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVP  108 (412)
Q Consensus        30 ~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  108 (412)
                      .++..+..++.-+.|..|+..++.......+     .-++.+..++. ..+|.+--..+.+++.+...     ....+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence            5566677778888899888888776544433     33445555554 35687777666666666543     2344678


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150          109 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  174 (412)
Q Consensus       109 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  174 (412)
                      .+.+.+.|++..+|..|+..+....+...    ...+++.+..++.|++..||.++.+.|..++..
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l~~~~~~~----~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQLMLKEKTN----QDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            88899999999999999887643332212    234567777788999999999999999888754

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=94.94  E-value=0.32  Score=35.82  Aligned_cols=97  Identities=10%  Similarity=0.048  Sum_probs=61.4

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  306 (412)
                      +.+++|..-..++..+..     ++ .-....+..+.+.++..++.+...|+..+..++++.|..+.    ...++..+.
T Consensus        18 l~~~dw~~ileicD~I~~-----~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~   91 (140)
T 3ldz_A           18 NTAEDWGLILDICDKVGQ-----SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS   91 (140)
T ss_dssp             SSSCCHHHHHHHHHHHTT-----ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHC-----CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence            345677765555554431     11 11233566677778888888888899999999998887654    234555555


Q ss_pred             hhhcCCchHHHHHHHHHHHHhccccch
Q 015150          307 EMINNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       307 ~~~~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      .++...+..||...+..+......++.
T Consensus        92 ~l~~~~~~~Vk~kil~li~~W~~~f~~  118 (140)
T 3ldz_A           92 NVLNKGHPKVCEKLKALMVEWTDEFKN  118 (140)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence            555545566777777766666655443

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=94.86  E-value=1.3  Score=35.93  Aligned_cols=30  Identities=17%  Similarity=-0.045  Sum_probs=15.6

Q ss_pred             hHHHHHHhhcccChHHHHHHHHHHHHHHHh
Q 015150          184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQV  213 (412)
Q Consensus       184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~  213 (412)
                      +.+.+...+.|++..||++...+|..++..
T Consensus       167 ~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~  196 (232)
T 3jxy_A          167 LFWIIGQLHSSKEFFIQKAIGWVLREYAKT  196 (232)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence            344444455555555555555555555543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=93.99  E-value=1.4  Score=32.74  Aligned_cols=98  Identities=8%  Similarity=-0.001  Sum_probs=67.4

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  306 (412)
                      +.+++|..-..++..+..=.      .-....+..+.+.+++.++.+...|+..+..++++.|..+.    ...++..+.
T Consensus        24 l~~~dw~~ileicD~I~~~~------~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~   97 (149)
T 3g2s_A           24 NKELDWASINGFCEQLNEDF------EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELI   97 (149)
T ss_dssp             CSSCCHHHHHHHHHHGGGSS------SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHCCC------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence            34567776665555543211      11233566677788899999999999999999999997654    346777777


Q ss_pred             hhhcC------CchHHHHHHHHHHHHhccccchh
Q 015150          307 EMINN------PHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       307 ~~~~~------~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      +++.+      .+..||...+..+......++.+
T Consensus        98 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~  131 (149)
T 3g2s_A           98 KVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE  131 (149)
T ss_dssp             HHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            77654      35678888888888877666543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.92  E-value=2.6  Score=35.77  Aligned_cols=186  Identities=8%  Similarity=0.018  Sum_probs=118.0

Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-Chhh-----H--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGF-----F--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  291 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~-----~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  291 (412)
                      ...++..+...+..-++..|..+...+..+.+.- |...     +  .+.++..++..-.+++..  ..+-.-|.++++.
T Consensus        76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diA--l~~G~mLRecir~  153 (341)
T 1upk_A           76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIA--LNCGIMLRECIRH  153 (341)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTH--HHHHHHHHHHHTS
T ss_pred             HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhH--hHHHHHHHHHHHh
Confidence            3567777777788888888888888877776543 2110     0  144555666655544332  1122222222221


Q ss_pred             h--ChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc---hhH---HHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150          292 F--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEI---TCSQLLPVVINASKDRVPNIKFNVAKVL  363 (412)
Q Consensus       292 ~--~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l  363 (412)
                      -  ..-.+....+..+.+....++..+-.-|...+..+.....   .++   -++.+...+-+++.++++-+|+.+++.|
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL  233 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  233 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence            0  0001122344566677888888888877777777654321   122   1446777788899999999999999999


Q ss_pred             HHHhhhhchHHH------HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          364 QSLIPIVDQSVV------EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       364 ~~l~~~~~~~~~------~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      |.+...-....+      ...-+..+..++.|+.+.++..|-+.+..++.
T Consensus       234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence            999754322211      24567788888999999999999999988765

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=93.52  E-value=0.52  Score=35.01  Aligned_cols=75  Identities=12%  Similarity=0.108  Sum_probs=60.0

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~  368 (412)
                      ...+..+.+.++++++.+...++..+..+.+.+|..+    ....++..+.+.+.+      ..+.||..++..+..+..
T Consensus        47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            4566777888889999999999999999999888763    244577777877764      467899999999999998


Q ss_pred             hhchH
Q 015150          369 IVDQS  373 (412)
Q Consensus       369 ~~~~~  373 (412)
                      .+...
T Consensus       127 ~f~~~  131 (149)
T 3g2s_A          127 GLPEE  131 (149)
T ss_dssp             HCTTC
T ss_pred             HhCCC
Confidence            77653

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=93.34  E-value=1.2  Score=33.71  Aligned_cols=97  Identities=11%  Similarity=0.078  Sum_probs=62.2

Q ss_pred             cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150          232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE  307 (412)
Q Consensus       232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~  307 (412)
                      .+++|..-..++..+..=     . .-....+..+.+.++..++.+...|+..|..++++.|..+.    ...++..+..
T Consensus        29 ~~~Dw~~~leicD~I~~~-----~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~  102 (163)
T 1x5b_A           29 TTEDWSLIMDICDKVGST-----P-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA  102 (163)
T ss_dssp             SSCCHHHHHHHHHHHHHS-----S-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhCC-----C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence            456777655555444321     1 11233555667778888889999999999999998887654    2456666655


Q ss_pred             hhcC-CchHHHHHHHHHHHHhccccchh
Q 015150          308 MINN-PHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       308 ~~~~-~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      ++.. .+..||..++..+......++.+
T Consensus       103 l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A          103 VIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5553 44677777777777776655543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=93.10  E-value=1.7  Score=32.14  Aligned_cols=96  Identities=6%  Similarity=0.044  Sum_probs=65.9

Q ss_pred             cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150          232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE  307 (412)
Q Consensus       232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~  307 (412)
                      .+++|..-..++..+..-.  .|    ....+..+.+.++++++.+...|+..|..++++.|..+.    ...++..+..
T Consensus        15 ~~~dw~~~leicD~I~~~~--~~----~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~k   88 (148)
T 1mhq_A           15 SEQDWSAIQNFCEQVNTDP--NG----PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK   88 (148)
T ss_dssp             SSCCHHHHHHHHHHHHHSS--HH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcCC--cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence            4567776555554443211  11    233555677778899999999999999999999987654    3467777777


Q ss_pred             hhcC------CchHHHHHHHHHHHHhccccch
Q 015150          308 MINN------PHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       308 ~~~~------~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      ++.+      .+..||..++..+...+..++.
T Consensus        89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (148)
T 1mhq_A           89 VLSPKYLGSWATGKVKGRVIEILFSWTVWFPE  120 (148)
T ss_dssp             TTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            7653      3567888888888887766654

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=92.93  E-value=1.4  Score=33.62  Aligned_cols=87  Identities=16%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~  368 (412)
                      ...+-.+.+.+++++..+...++..+..+.+.+|..+    ....++..+.+++..      ..+.||..++..+..+..
T Consensus        49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4466677777888888888899999988888888653    234566667776652      357899999999999988


Q ss_pred             hhchHHHHhhHHHHHHh
Q 015150          369 IVDQSVVEKSIRPCLVE  385 (412)
Q Consensus       369 ~~~~~~~~~~i~~~l~~  385 (412)
                      .++...........|+.
T Consensus       129 ~f~~~~~i~~~y~~Lk~  145 (171)
T 1juq_A          129 ALPEEAKIKDAYHMLKR  145 (171)
T ss_dssp             HCTTCHHHHHHHHHHHH
T ss_pred             HcCCCcHHHHHHHHHHH
Confidence            87654333334444433

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=92.71  E-value=2.4  Score=33.89  Aligned_cols=132  Identities=8%  Similarity=-0.001  Sum_probs=85.5

Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhhhhhH
Q 015150          224 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIV  302 (412)
Q Consensus       224 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l  302 (412)
                      ...+..+..++.-..|..++..+.......     .+.-++.+..++. ..+|.+....+.+++.++...     ...+.
T Consensus        57 ~~~~~~L~~s~~~E~r~la~~~l~~~~~~~-----~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~  126 (220)
T 2b6c_A           57 CQEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELP  126 (220)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHH
T ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHH
Confidence            366667777777777887777766543322     2346666666665 456777777666666666532     23355


Q ss_pred             HHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150          303 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  369 (412)
Q Consensus       303 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  369 (412)
                      +.+.....+++.-+|..++..+  + .. ..+...+.+++.+...+.|+..=||+++.++|..++..
T Consensus       127 ~~i~~W~~s~~~w~rR~ai~~~--l-~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          127 TIFALFYGAENFWNRRVALNLQ--L-ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHTT--T-TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHH--H-HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            7778888888855555444432  2 22 22223456677777788999999999999999999875

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=92.66  E-value=2.3  Score=31.48  Aligned_cols=75  Identities=15%  Similarity=0.120  Sum_probs=60.7

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~  368 (412)
                      ...+..+.+.++++++.+...++..+..+...+|..+    ....++..+.+.+.+      ..+.||..++..+..++.
T Consensus        37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4566777788889999999999999999999998763    245678888887764      367899999999999998


Q ss_pred             hhchH
Q 015150          369 IVDQS  373 (412)
Q Consensus       369 ~~~~~  373 (412)
                      .+...
T Consensus       117 ~f~~~  121 (148)
T 1mhq_A          117 WFPED  121 (148)
T ss_dssp             HCTTC
T ss_pred             HcCCC
Confidence            87654

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=92.41  E-value=3.1  Score=32.37  Aligned_cols=142  Identities=12%  Similarity=0.087  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhccc------ChHHHHHHHHHHHHHHHh--hchhhHHhhHHHHHHHH
Q 015150          159 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE------FPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVEL  230 (412)
Q Consensus       159 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------~~~vr~~~~~~l~~i~~~--~~~~~~~~~~~~~l~~~  230 (412)
                      ..|..+.+.+..=.   |    .+.++|.|..++.++      +...-...++....+..+  +..+.+...++|.+..+
T Consensus        23 ~~r~~aL~sL~~D~---g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEKES---G----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHHCS---S----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC---C----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            34666666654322   1    357888888776542      233333344444444433  22355667788888776


Q ss_pred             hcCC--Cc-hHHHHHHHHhhHHHhhhCh--hhHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHHhChhhhhhhhHH
Q 015150          231 AEDR--HW-RVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWAMQHIVP  303 (412)
Q Consensus       231 ~~d~--~~-~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~l~  303 (412)
                      +-.+  .+ .+|..++..++.++...|.  ....+.+...+.+.+.|++  ......|+..+..    +|.+....-++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhc
Confidence            5221  12 7999999999999999876  4466778888888887764  4466666665544    666666666778


Q ss_pred             HHHhhhcC
Q 015150          304 QVLEMINN  311 (412)
Q Consensus       304 ~l~~~~~~  311 (412)
                      .+..+.++
T Consensus       172 ~l~~~~~~  179 (196)
T 4atg_A          172 HAEEYKRT  179 (196)
T ss_dssp             HHHHHHHH
T ss_pred             CHHHHHHH
Confidence            87766543

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=92.27  E-value=1.8  Score=33.02  Aligned_cols=97  Identities=7%  Similarity=0.078  Sum_probs=68.4

Q ss_pred             cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHHh
Q 015150          232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE  307 (412)
Q Consensus       232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~  307 (412)
                      .+++|..-..++..+..=.  .|    ....+..+.+.++..++.+...|+..|..++++.|..+.    ...++..+..
T Consensus        27 ~~~Dw~~ileicD~I~~~~--~~----~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k  100 (171)
T 1juq_A           27 RQEDWEYIIGFCDQINKEL--EG----PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK  100 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHST--TH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcCC--cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence            4567776555555443211  11    233556677788899999999999999999999887654    3467777777


Q ss_pred             hhcC------CchHHHHHHHHHHHHhccccchh
Q 015150          308 MINN------PHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       308 ~~~~------~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      ++..      .+..||..+++.+......++..
T Consensus       101 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~  133 (171)
T 1juq_A          101 VVSPKYLGDRVSEKVKTKVIELLYSWTMALPEE  133 (171)
T ss_dssp             HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HhccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            7652      34789999999999988777654

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=92.20  E-value=2.5  Score=30.92  Aligned_cols=73  Identities=14%  Similarity=0.073  Sum_probs=35.9

Q ss_pred             hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhC
Q 015150           65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN  137 (412)
Q Consensus        65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  137 (412)
                      .+....+.+.++++++.+...++..|..++..+|.    +....+++..+..+++..++.||..+...+..++..+.
T Consensus        41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~  117 (140)
T 3ldz_A           41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK  117 (140)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence            34444455555555555555555555555554441    22222333333333334455666666666666555543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=91.63  E-value=2.1  Score=34.43  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=65.5

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  306 (412)
                      +.+++|..=..++..+..  ...|    ....+..+.+.++..++.+...|+..|..++++.|..+.    ...++..+.
T Consensus        21 ~~~~dw~~ileicD~I~~--~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~   94 (226)
T 3zyq_A           21 LLETDWESILQICDLIRQ--GDTQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELK   94 (226)
T ss_dssp             CSSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhC--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHH
Confidence            345677766555555431  1112    234666777888899999999999999999999987654    245555555


Q ss_pred             hhhcC-CchHHHHHHHHHHHHhccccchh
Q 015150          307 EMINN-PHYLYRMTILQAISLLAPVMGSE  334 (412)
Q Consensus       307 ~~~~~-~~~~~r~~~~~~l~~l~~~~~~~  334 (412)
                      .+++. .+..||..++..+...+..+..+
T Consensus        95 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~  123 (226)
T 3zyq_A           95 DLLKRQVEVNVRNKILYLIQAWAHAFRNE  123 (226)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            55432 44678888888888777665443

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=90.52  E-value=1.4  Score=32.15  Aligned_cols=70  Identities=10%  Similarity=0.134  Sum_probs=47.8

Q ss_pred             HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHh------hHHHHHHhhc--------CCCCccHHHHHHHH
Q 015150          336 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEK------SIRPCLVELS--------EDPDVDVRFFATQA  401 (412)
Q Consensus       336 ~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~------~i~~~l~~l~--------~d~~~~vr~~a~~a  401 (412)
                      +...+++.+.+.|+++.++++..+++.|..++.. |.+.+..      .++..+....        +|+-..||..|.+.
T Consensus        46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~-Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl  124 (140)
T 1vdy_A           46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK-SGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET  124 (140)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh-CCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence            4578999999999999999999999999999854 3333322      2222222221        22335699999888


Q ss_pred             HHHhH
Q 015150          402 LQSKD  406 (412)
Q Consensus       402 l~~~~  406 (412)
                      +..+.
T Consensus       125 ~~ll~  129 (140)
T 1vdy_A          125 ISAIF  129 (140)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87664

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=90.29  E-value=4.4  Score=32.71  Aligned_cols=160  Identities=14%  Similarity=0.013  Sum_probs=90.8

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhc-cCCcHHHHHHHH-HHHHhcCcccChhHHHHh
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRSALA-TVIMGMAPILGKDATIEQ  183 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~-~~l~~l~~~~~~~~~~~~  183 (412)
                      ....+.++..++..+.|..|+..+....+...++.     ++.+...+ ...+|.+-...+ ..++.+...     ..+.
T Consensus        62 ~~~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~-----~p~~  131 (232)
T 3jxy_A           62 FQIIIRELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLK-----HPEL  131 (232)
T ss_dssp             HHHHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH-----CGGG
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHccCCChHHHHHhhHHHHHHHHHH-----CHHH
Confidence            34567777788888899988888875544443331     12222222 356787766553 333433321     0122


Q ss_pred             hHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHH
Q 015150          184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  263 (412)
Q Consensus       184 l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  263 (412)
                      ..+.+.....+++..+|..++..+-.   ...... ...+++.+.....|+..-|+.++..+|..++...     .+.+.
T Consensus       132 ~~~~l~~W~~s~~~w~rR~ai~~~l~---~~~~~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~-----p~~v~  202 (232)
T 3jxy_A          132 ISAYIPKWIASDNIWLQRAAILFQLK---YKQKMD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTN-----PDVVW  202 (232)
T ss_dssp             GGGTHHHHHHSSCHHHHHHHHHTTTT---CGGGCC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHH---HHhCCC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhC-----HHHHH
Confidence            45667777778888777776654321   111111 1345666777888888999999888887776543     22344


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHH
Q 015150          264 ALCMQWLKDKVYSIRDAAANNVK  286 (412)
Q Consensus       264 ~~l~~~l~d~~~~vr~~a~~~l~  286 (412)
                      +.+.+.  .-....+..|++.++
T Consensus       203 ~fl~~~--~l~~~~~r~A~k~l~  223 (232)
T 3jxy_A          203 EYVQNN--ELAPLSKREAIKHIK  223 (232)
T ss_dssp             HHHHHS--CCCHHHHHHHTTTTH
T ss_pred             HHHHHC--CCCHHHHHHHHHhcc
Confidence            444432  223344444555443

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=89.98  E-value=5  Score=30.26  Aligned_cols=76  Identities=12%  Similarity=0.086  Sum_probs=45.2

Q ss_pred             hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCC-ChHHHHHHHHHHHHHHHHhhCH
Q 015150           64 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP  138 (412)
Q Consensus        64 ~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~  138 (412)
                      ..+....+.+.++++++.+...++..|..++..+|.    +....+++..+..+++. .++.||..++..+..++..+..
T Consensus        50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~  129 (163)
T 1x5b_A           50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK  129 (163)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            345556666666667777777777777777666552    23333344444444433 4567777777777777766544


Q ss_pred             H
Q 015150          139 E  139 (412)
Q Consensus       139 ~  139 (412)
                      +
T Consensus       130 ~  130 (163)
T 1x5b_A          130 D  130 (163)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=87.23  E-value=1.8  Score=38.80  Aligned_cols=57  Identities=12%  Similarity=0.051  Sum_probs=41.7

Q ss_pred             chHHHHHHHHhHHHHhhccCchhh---hhhhHHHHHhhccCCChHHHHHHHHHHHHHHHH
Q 015150           40 QDSVRLLAVEGCGALGKLLEPQDC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCEA   96 (412)
Q Consensus        40 ~~~~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~   96 (412)
                      ++.+-.-||.-+|.++++.|....   .-..-..+++++++++++||..|+.++.++...
T Consensus       418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~  477 (480)
T 1ho8_A          418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY  477 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            566777888889999888776421   112556678888888888888888888877643

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=87.20  E-value=7.7  Score=29.00  Aligned_cols=95  Identities=15%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhChhhhh----hhhHHH-H
Q 015150          232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQ-V  305 (412)
Q Consensus       232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~l~~-l  305 (412)
                      .+++|..-..++..+..    - . .-....+..+.+.++ ..++.+...|+..+..++++.|..+..    ..++.. +
T Consensus        30 ~~~Dw~~~leicD~I~~----~-~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~L  103 (157)
T 1elk_A           30 QSEDWALNMEICDIINE----T-E-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVL  103 (157)
T ss_dssp             SSCCHHHHHHHHHHHHH----S-S-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHhC----C-C-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHH
Confidence            35677765555554432    1 1 112335556677776 578888999999999999998876542    346665 4


Q ss_pred             Hhhhc---CCchHHHHHHHHHHHHhccccc
Q 015150          306 LEMIN---NPHYLYRMTILQAISLLAPVMG  332 (412)
Q Consensus       306 ~~~~~---~~~~~~r~~~~~~l~~l~~~~~  332 (412)
                      ...+.   ++...||..+++.+......++
T Consensus       104 vk~~~~k~~~~~~Vk~kil~li~~W~~~f~  133 (157)
T 1elk_A          104 VRTILPKNNPPTIVHDKVLNLIQSWADAFR  133 (157)
T ss_dssp             HHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence            55553   2345778888887777765554

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=86.82  E-value=16  Score=32.14  Aligned_cols=251  Identities=10%  Similarity=0.081  Sum_probs=123.8

Q ss_pred             CCcHHHHHHHHHHHHhcCcc--cC----hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHH-Hhhchh-hHHhhHHHH
Q 015150          155 DSSQHVRSALATVIMGMAPI--LG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN-QVIGID-LLSQSLLPA  226 (412)
Q Consensus       155 d~~~~vr~~~~~~l~~l~~~--~~----~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~-~~~~~~-~~~~~~~~~  226 (412)
                      |++|.--..+.+.+..+...  +.    +..+...++-.+..+++.+|+.-|...-..|..+- +..+-. .+.+.+-..
T Consensus        95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni  174 (403)
T 3fga_B           95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI  174 (403)
T ss_dssp             CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            45565555555555444322  11    12222344555666677777777766655555542 222211 111222222


Q ss_pred             HHHHhcCCC-chHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHHhChhhhhhhh
Q 015150          227 IVELAEDRH-WRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI  301 (412)
Q Consensus       227 l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~  301 (412)
                      +.++.-+.. ..--..+++.++.+...+..   +.....+...++.+-+.+... --.+...++..+++.-  ..+...+
T Consensus       175 f~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD--p~L~~~v  252 (403)
T 3fga_B          175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEPV  252 (403)
T ss_dssp             HHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC--GGGHHHH
T ss_pred             HHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC--chhHHHH
Confidence            333222211 11112355566666655531   112222333333333333222 1123333444444321  1223445


Q ss_pred             HHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHH---HhhHHHHHhhcCCCCchHHHHHHHHHH--HHhhhhc--hHH
Q 015150          302 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---SQLLPVVINASKDRVPNIKFNVAKVLQ--SLIPIVD--QSV  374 (412)
Q Consensus       302 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~il~~l~~~l~d~~~~vR~~~~~~l~--~l~~~~~--~~~  374 (412)
                      +..+++..--.+..-....+.-+..+.+.++.+.+.   ..++..+..++++++..|-..|+....  .+...+.  ...
T Consensus       253 i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~  332 (403)
T 3fga_B          253 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAK  332 (403)
T ss_dssp             HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHH
T ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHH
Confidence            555555444556666677888888888888876543   345556677788888877776664431  1111111  123


Q ss_pred             HHhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHH
Q 015150          375 VEKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       375 ~~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ..+.+.|.|.+ ..+.=+..||..+..++..+.+
T Consensus       333 IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e  366 (403)
T 3fga_B          333 ILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  366 (403)
T ss_dssp             HHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            34556666655 3455577799988888887654

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=86.51  E-value=3.9  Score=29.38  Aligned_cols=94  Identities=16%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhh
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS  378 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~  378 (412)
                      ..++|.|+..++|.||.+-...+..+..+         .+.++|.+.+.+++.+..-+.-   .+..+...+.. .....
T Consensus        30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~yw---il~~lv~~~~~-~~~~~   96 (134)
T 3ut4_A           30 EPIIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWKYW---VIKLMIPYLIY-PNKQL   96 (134)
T ss_dssp             HHHHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHHHH---HHHHHGGGCCH-HHHHH
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHHHH---HHHHHHHcCCH-HHHHH
Confidence            34666777777777776666665555542         2344555555544433333222   22223322222 23345


Q ss_pred             HHHHHHhhcCCC-----CccHHHHHHHHHHHh
Q 015150          379 IRPCLVELSEDP-----DVDVRFFATQALQSK  405 (412)
Q Consensus       379 i~~~l~~l~~d~-----~~~vr~~a~~al~~~  405 (412)
                      +.|.|.++...|     ..+|...|...|..+
T Consensus        97 l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~  128 (134)
T 3ut4_A           97 VKSELERLSSLEIINEDIREIVNLSKDYLHFY  128 (134)
T ss_dssp             HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence            666666654443     334666666665554

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=86.43  E-value=11  Score=30.13  Aligned_cols=95  Identities=12%  Similarity=0.188  Sum_probs=57.9

Q ss_pred             cCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHH----HhhhhhHHH
Q 015150           76 QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI----QHILPCVKE  151 (412)
Q Consensus        76 ~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~~~l~~  151 (412)
                      .++||..=...+..+.    .  ......+.+..+.+-+++.++.+...|+..|..+.++.|.....    ..++..+.+
T Consensus        22 ~~~dw~~ileicD~I~----~--~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~   95 (226)
T 3zyq_A           22 LETDWESILQICDLIR----Q--GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD   95 (226)
T ss_dssp             SSCCHHHHHHHHHHHH----T--TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHh----C--CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence            4567755444444332    1  22234677888888889999999999999999999988875221    112333333


Q ss_pred             hc-cCCcHHHHHHHHHHHHhcCcccC
Q 015150          152 LS-SDSSQHVRSALATVIMGMAPILG  176 (412)
Q Consensus       152 ~~-~d~~~~vr~~~~~~l~~l~~~~~  176 (412)
                      ++ ...+..|+..+.+.+..-+..+.
T Consensus        96 l~~~~~~~~Vk~kil~li~~W~~~f~  121 (226)
T 3zyq_A           96 LLKRQVEVNVRNKILYLIQAWAHAFR  121 (226)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHhC
Confidence            33 23455677766666655554443

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=85.93  E-value=6.4  Score=29.42  Aligned_cols=74  Identities=12%  Similarity=0.134  Sum_probs=54.6

Q ss_pred             hhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchhHH----HHhhHHH-HHhhcC---CCCchHHHHHHHHHHHHhhh
Q 015150          299 QHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPV-VINASK---DRVPNIKFNVAKVLQSLIPI  369 (412)
Q Consensus       299 ~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~----~~~il~~-l~~~l~---d~~~~vR~~~~~~l~~l~~~  369 (412)
                      ...+..+.+.++ +++..+...++..+..+.+.+|..+.    ...++.. +.+.+.   ++...||..++..+..+...
T Consensus        52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~  131 (157)
T 1elk_A           52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA  131 (157)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            456667777776 47888889999999999988887632    3345665 556553   34458999999999999887


Q ss_pred             hch
Q 015150          370 VDQ  372 (412)
Q Consensus       370 ~~~  372 (412)
                      ++.
T Consensus       132 f~~  134 (157)
T 1elk_A          132 FRS  134 (157)
T ss_dssp             HTT
T ss_pred             cCC
Confidence            754

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=84.38  E-value=22  Score=31.74  Aligned_cols=252  Identities=11%  Similarity=0.082  Sum_probs=128.4

Q ss_pred             cCCcHHHHHHHHHHHHhcCcc--c----ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHh-hch-hhHHhhHHH
Q 015150          154 SDSSQHVRSALATVIMGMAPI--L----GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-IGI-DLLSQSLLP  225 (412)
Q Consensus       154 ~d~~~~vr~~~~~~l~~l~~~--~----~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~-~~~-~~~~~~~~~  225 (412)
                      .|++|.--..+.+.+..+...  +    .+..+...++-.+..+++.+|+.-|...-..|..+-.. .+- ..+.+.+-.
T Consensus       127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n  206 (449)
T 2npp_B          127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN  206 (449)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356776666666666555322  2    23334455667777788888888887766666665322 221 122223333


Q ss_pred             HHHHHhcCC-CchHHHHHHHHhhHHHhhhC---hhhHHHHHHHHHHHHhcCchhHH-HHHHHHHHHHHHHHhChhhhhhh
Q 015150          226 AIVELAEDR-HWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSI-RDAAANNVKRLAEEFGPDWAMQH  300 (412)
Q Consensus       226 ~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~  300 (412)
                      .+.++.-+. ...--..+++.++.+...+.   ++.....+...++.+.+.+.... -.+...++..+++.-  ..+...
T Consensus       207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD--p~L~~~  284 (449)
T 2npp_B          207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP  284 (449)
T ss_dssp             HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred             HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC--cHhHHH
Confidence            333333221 11111234555555555443   12222223333344333332221 122333444444321  122344


Q ss_pred             hHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHH---HhhHHHHHhhcCCCCchHHHHHHHHHH--HHhhhhc--hH
Q 015150          301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---SQLLPVVINASKDRVPNIKFNVAKVLQ--SLIPIVD--QS  373 (412)
Q Consensus       301 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~il~~l~~~l~d~~~~vR~~~~~~l~--~l~~~~~--~~  373 (412)
                      ++..+++..--.+..-...++.-+..+.+.++...+.   ..++..+..++++++..|-..|+..+.  .+...+.  ..
T Consensus       285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~  364 (449)
T 2npp_B          285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA  364 (449)
T ss_dssp             HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchh
Confidence            5555555444455555667888888888888776544   345666777788888777766664432  1111111  11


Q ss_pred             HHHhhHHHHHHh-hcCCCCccHHHHHHHHHHHhHH
Q 015150          374 VVEKSIRPCLVE-LSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       374 ~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ...+.+.|.|.+ ..++=+..||..+..++..+.+
T Consensus       365 ~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e  399 (449)
T 2npp_B          365 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  399 (449)
T ss_dssp             HHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred             hhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            223344444544 2444566789888888876554

>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17

Probab=81.76  E-value=19  Score=29.01  Aligned_cols=67  Identities=15%  Similarity=0.080  Sum_probs=34.8

Q ss_pred             hHHHHHHhcCCChHHHHHHHHH----HHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcC
Q 015150          106 VVPAYVRLLRDNEAEVRIAAAG----KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA  172 (412)
Q Consensus       106 l~~~l~~~l~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~  172 (412)
                      ..+.+.+.+.|++.-+|..++.    .+..+.....++.....++..+...+.|++..|+.++.++|..++
T Consensus       109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~g  179 (235)
T 1t06_A          109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVA  179 (235)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence            4455556666666666666665    333311111122333445555555666666666666666665544

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=80.79  E-value=20  Score=28.56  Aligned_cols=33  Identities=12%  Similarity=0.151  Sum_probs=14.6

Q ss_pred             hHHHHHhhhcCCchHHHHHHHHHHHHhccccch
Q 015150          301 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       301 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      .+..+.+.+++++..+..-++..+..+...+|.
T Consensus        43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~   75 (220)
T 1dvp_A           43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA   75 (220)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH
Confidence            333444444444444444444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-65
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-24
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	9e-24
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-23
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-23
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-22
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-19
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-19
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-18
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-14
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	8e-13
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-04
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-08
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	4e-10
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	1e-08
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.002
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-10
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-08
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	3e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-08
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-07
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-05
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	8e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	4e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.002
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	0.002

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  217 bits (553), Expect = 1e-65
 Identities = 230/407 (56%), Positives = 308/407 (75%), Gaps = 4/407 (0%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
           PMVRR+AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D  A ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEV
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297

Query: 122 RIAAAGKVTKICRILNPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 177
           R AA+ KV + C  L+ +      +  ILPC+KEL SD++QHV+SALA+VIMG++PILGK
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357

Query: 178 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 237
           D TIE LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WR
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417

Query: 238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 297
           VRLAIIEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA
Sbjct: 418 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 477

Query: 298 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 357
              I+P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++F
Sbjct: 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 537

Query: 358 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404
           NVAK LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL  
Sbjct: 538 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (258), Expect = 1e-24
 Identities = 50/222 (22%), Positives = 97/222 (43%)

Query: 29  MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 88
           + +F    +D+   VRL  +     + +++  +     +LP IV  ++D  WRVR  +  
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 424

Query: 89  QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 148
            +  L   +G E     +    +  L D+   +R AA   + K+      E A   I+P 
Sbjct: 425 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 484

Query: 149 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 208
           V  +S D +   R      I  ++ + G+D T + +LP  L +  D   +VR N+   L 
Sbjct: 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544

Query: 209 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 250
           ++  ++    L   + P + +L +D+   V+    E + +L+
Sbjct: 545 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 9e-24
 Identities = 92/402 (22%), Positives = 171/402 (42%), Gaps = 6/402 (1%)

Query: 4   VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
           +R ++   L   A  +     +SE++    +   D+ D V L   E  G    L+   + 
Sbjct: 26  LRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQLGTFTTLVGGPEY 84

Query: 64  VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
           V  +LP + + +  +   VR      L  +     P    +  VP   RL   +    R 
Sbjct: 85  VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 144

Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
           +A G  +     ++  +    +    + L SD +  VR A A+ +   A +L  D    +
Sbjct: 145 SACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
           ++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + 
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 244 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQ 299
           +    L   +G       L       +KD    +R AA++ VK   E    D      M 
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 359
            I+P + E++++ +   +  +   I  L+P++G + T   LLP+ +   KD  P ++ N+
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 360 AKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 401
              L  +  ++    + +S+ P +VEL+ED    VR    + 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (250), Expect = 1e-23
 Identities = 51/271 (18%), Positives = 105/271 (38%), Gaps = 2/271 (0%)

Query: 114 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 173
           LR+ + ++R+ +  K++ I   L  E     +LP + +   D  + V  ALA  +     
Sbjct: 19  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 77

Query: 174 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 233
           ++G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 78  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 137

Query: 234 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 293
             +  R +      +   ++      + L         D    +R AAA+ +   A+   
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAE-LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 196

Query: 294 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 353
            D     I+P    + ++     R+  ++A   +A ++  E   + ++P +  A++D+  
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256

Query: 354 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLV 384
            +++ VA     L   V   + +  + P   
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQ 287

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-23
 Identities = 66/339 (19%), Positives = 130/339 (38%), Gaps = 2/339 (0%)

Query: 29  MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 88
           +++  +  +++   +RL +++    +   L  +   + +LP + +   D+   V   +A 
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70

Query: 89  QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 148
           QL      VG       ++P    L    E  VR  A   +  I    +P     H +P 
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130

Query: 149 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 208
           VK L+           A  +  +       A   +L   F +L  D+ P VR    SKL 
Sbjct: 131 VKRLAGGDW-FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189

Query: 209 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 268
           +  +V+ +D +   ++P    LA D    VRL  +E    +A  L     +  +     Q
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ 249

Query: 269 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 328
             +DK + +R   A+    L +  GP+     +VP    ++ +     R      +    
Sbjct: 250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309

Query: 329 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 367
             + ++   + ++  ++   K+ V +   +V   L S+I
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI 348

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (237), Expect = 4e-22
 Identities = 79/403 (19%), Positives = 159/403 (39%), Gaps = 5/403 (1%)

Query: 4   VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
           V  + A  LG F   V        ++   E L   ++  VR  AVE   A+     P D 
Sbjct: 64  VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDL 123

Query: 64  VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 123
            AH +P++   +    W      A  L+ +C        ++++   +  L  D+   VR 
Sbjct: 124 EAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR 182

Query: 124 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 183
           AAA K+ +  ++L  +     I+P    L+SD    VR       + +A +L ++     
Sbjct: 183 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242

Query: 184 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 243
           ++P      +D+   VR  +  K  ++ + +G ++    L+PA   L +D    VR A  
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302

Query: 244 EYIPLLASQLGVGFFD----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 299
             +      L     +     ++     + + D    ++ A A+ +  L+   G D  ++
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362

Query: 300 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 359
           H++P  L  + +     R+ I+  +  +  V+G       LLP ++  ++D    ++  +
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422

Query: 360 AKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 402
            + +  L   +     ++ +    +    D    +R  AT  L
Sbjct: 423 IEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNL 465

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (217), Expect = 2e-19
 Identities = 33/172 (19%), Positives = 65/172 (37%)

Query: 1   MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
              VR +    +   A  +       ++ S+      D   ++R  A      L +    
Sbjct: 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 120
           +   A I+P ++  S D ++  R      +  L E  G + T   ++P  +R+  D  A 
Sbjct: 475 EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVAN 534

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 172
           VR   A  + KI  IL+       + P +++L+ D    V+      +  ++
Sbjct: 535 VRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (215), Expect = 3e-19
 Identities = 51/278 (18%), Positives = 121/278 (43%)

Query: 51  CGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY 110
           C  L         ++ ILP I     D +  V+  +A+ +  L   +G + T   ++P +
Sbjct: 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 368

Query: 111 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMG 170
           +  L+D   EVR+     +  +  ++      Q +LP + EL+ D+   VR A+   +  
Sbjct: 369 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428

Query: 171 MAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 230
           +A  LG +   E+L  + ++ L D    +R    S L ++ +  G +    +++P ++ +
Sbjct: 429 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 488

Query: 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 290
           + D ++  R+  +  I +L+   G       +    ++   D V ++R   A +++++  
Sbjct: 489 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548

Query: 291 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 328
                     + P + ++  +     +    +A+++L+
Sbjct: 549 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 5e-18
 Identities = 49/264 (18%), Positives = 110/264 (41%)

Query: 26  SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM 85
           S+I+   +EL  D    V+         L  +L   + + H+LP+ +   +D+   VR  
Sbjct: 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 382

Query: 86  VANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 145
           + + L  + E +G       ++PA V L  D +  VR+A    +  +   L  E   + +
Sbjct: 383 IISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL 442

Query: 146 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS 205
                    D    +R A  + +  +    GK+     ++P  L++  D     R+  + 
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLF 502

Query: 206 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 265
            ++ +++V G D+ ++ +LP ++ +A D    VR  + + +  +   L       ++  +
Sbjct: 503 CINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI 562

Query: 266 CMQWLKDKVYSIRDAAANNVKRLA 289
             +  +D+   ++  A   +  L+
Sbjct: 563 LEKLTQDQDVDVKYFAQEALTVLS 586

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 53/403 (13%), Positives = 133/403 (33%), Gaps = 21/403 (5%)

Query: 26  SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM 85
            +++ +  +L +D    V+ LAV+  G L   +  +  V  I+  +         ++R +
Sbjct: 44  RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDI 102

Query: 86  VANQLYELCEAVGPEPTRSDVVPAYVR---------LLRDNEAEVRIAAAGKVTKICRIL 136
            +  L  +   + P  + S +     +         + +  +  V++ A   +  +    
Sbjct: 103 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162

Query: 137 NPELAIQH--ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 194
              L   H  IL C+    +     VR      +  +    G    ++ +  +   L K+
Sbjct: 163 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN 222

Query: 195 EFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 252
           +        I  +  +++  G  +      ++P +V+        +R   I+       +
Sbjct: 223 DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 282

Query: 253 LGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN 310
                      +  +C+++L        D    +   +  + G D              +
Sbjct: 283 CPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGS--DDEYSDDD 340

Query: 311 NPHYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 368
           +  +  R    + +  +       +      + P +I+  K+R  N+K +V     SL+ 
Sbjct: 341 DMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL- 399

Query: 369 IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 411
              + V      P  +E  E P   ++      +++  + M  
Sbjct: 400 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE 442

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 8e-13
 Identities = 42/239 (17%), Positives = 87/239 (36%), Gaps = 21/239 (8%)

Query: 4    VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 63
            +R  A  +LG+    ++ +    E+ S+  E      + V+  A    G++         
Sbjct: 831  IRLLALLSLGEVGHHIDLSGQL-ELKSVILEAFSSPSEEVKSAASYALGSISV-----GN 884

Query: 64   VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAE 120
            +   LP ++        + +Y++ + L E+  +      +P   ++    ++     E  
Sbjct: 885  LPEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEG 943

Query: 121  VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--D 178
             R   A  + K+  I    L     LP +K      S + RS++ T +        +  D
Sbjct: 944  TRNVVAECLGKLTLIDPETL-----LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPID 998

Query: 179  ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDR 234
              ++  +  FL  L+D   +VR   +   +           DLL   +LP +    + R
Sbjct: 999  PLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT-VLPHLYNETKVR 1056

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 3e-11
 Identities = 58/420 (13%), Positives = 126/420 (30%), Gaps = 26/420 (6%)

Query: 2    PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE-- 59
             + R +    L   A +     L+  +      L    + + R L +    AL  L++  
Sbjct: 619  EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 678

Query: 60   ----PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRL 113
                    +  +L  +     +    V  M  + L  L +            ++   + L
Sbjct: 679  SDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGL 738

Query: 114  LRD-------NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALAT 166
            +R          A +    A  VT    +   +L      P   + ++ + +    ++A 
Sbjct: 739  VRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAK 798

Query: 167  VIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 226
             +  +     K+        I           +RL  +  L +V   I +    + L   
Sbjct: 799  CVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLE-LKSV 857

Query: 227  IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 286
            I+E        V+ A    +  ++      +    L  +  Q    + Y +  +    + 
Sbjct: 858  ILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQP--KRQYLLLHSLKEIIS 915

Query: 287  RLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN 346
              +      +    I   +L+         R  + + +  L  +         LLP +  
Sbjct: 916  SASVVGLKPYVEN-IWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-----LLPRLKG 969

Query: 347  ASKDRVPNIKFNVAKVLQSLIPIVDQSVVE--KSIRPCLVELSEDPDVDVRFFATQALQS 404
                     + +V   ++  I    Q +    K+     ++  EDPD++VR  A     S
Sbjct: 970  YLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1029

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 300 HIVPQVLEMINNPHYLYR-------MTILQAISLLAPVMGSEITCSQLLPVVINASKDRV 352
           + +  +LE + +    +R       MT LQ  S+       + +  +++ +++   +D+ 
Sbjct: 3   YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKL----DDDSERKVVKMILKLLEDKN 58

Query: 353 PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 404
             ++    K L  L+  V +  VE +I   L          +R  ++  L++
Sbjct: 59  GEVQNLAVKCLGPLVSKVKEYQVE-TIVDTLCTNMLSDKEQLRDISSIGLKT 109

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 57.4 bits (138), Expect = 4e-10
 Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 62/240 (25%)

Query: 76  QDKSWRVRYM-VANQLY----ELCEAVGPEP--------TRSDVVPAYVRLLRDNEAEVR 122
            D    V      ++ +     L      +P         R   V A   L+RD++  VR
Sbjct: 24  GDACVAVESGRQIDRFFRNNPHLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVR 83

Query: 123 IAAAG-------------KVTKICRILNPELAIQHILPCVK-----ELSSDSSQHVRSAL 164
            A A              +  ++   +   L ++ +            +    +     L
Sbjct: 84  RAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRL 143

Query: 165 ATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 224
              +      + K             + +D  P+VR  + S+L                 
Sbjct: 144 FRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR---------------G 188

Query: 225 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN 284
             ++EL  D  W VRLA +E+  L A                ++ L +    +R A A  
Sbjct: 189 DDLLELLHDPDWTVRLAAVEHASLEA----------------LRELDEPDPEVRLAIAGR 232

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 52.8 bits (126), Expect = 1e-08
 Identities = 35/207 (16%), Positives = 58/207 (28%), Gaps = 49/207 (23%)

Query: 19  VEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCG--ALGKLLEPQD-------CVAHILP 69
             A  ++   +     L +D  + VR           L  L+  +D            L 
Sbjct: 58  RRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLE 117

Query: 70  VIVNFSQDKSWRVRYMVANQLYELC---------EAVGPEPTRSDVVPAYVRLLRDNEAE 120
            +   + D+ + VR  V  ++               V     +     +   + +D E E
Sbjct: 118 QLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPE 177

Query: 121 VRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 180
           VR   A ++                   + EL  D    VR A                 
Sbjct: 178 VRRIVASRL---------------RGDDLLELLHDPDWTVRLAAV--------------- 207

Query: 181 IEQLLPIFLSLLKDEFPDVRLNIISKL 207
            E      L  L +  P+VRL I  +L
Sbjct: 208 -EHASLEALRELDEPDPEVRLAIAGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 33/268 (12%), Positives = 71/268 (26%), Gaps = 79/268 (29%)

Query: 137 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 196
           NP LA+Q++        +D     R+              + + +E L P    L++D  
Sbjct: 43  NPHLAVQYL--------ADPFWERRAIAV-----------RYSPVEALTP----LIRDSD 79

Query: 197 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY--IPLLASQLG 254
             VR  +  +L +                 +  L  D    VR+ + +   +  L     
Sbjct: 80  EVVRRAVAYRLPR---------------EQLSALMFDEDREVRITVADRLPLEQLEQMAA 124

Query: 255 VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY 314
              +  +   +           +RD      K +A+    +         +  M  +P  
Sbjct: 125 DRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEES--------LGLMTQDPEP 176

Query: 315 LYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 374
             R  +   +                   ++    D    ++    +             
Sbjct: 177 EVRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVE------------- 208

Query: 375 VEKSIRPCLVELSEDPDVDVRFFATQAL 402
                    +   ++PD +VR      L
Sbjct: 209 ---HASLEALRELDEPDPEVRLAIAGRL 233

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 54/424 (12%), Positives = 131/424 (30%), Gaps = 43/424 (10%)

Query: 4   VRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 60
            R  +   L              +   I S       D    +R         +    E 
Sbjct: 62  TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 121

Query: 61  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-------SDVVPAYVRL 113
           Q+    +LP + +    + +         L ++CE               + ++P +++ 
Sbjct: 122 QN-WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF 180

Query: 114 LRDNEAEVRIAAAGKVTKICRILNPELAIQH--ILPCVKELSSDSSQHVRSALATVIMGM 171
            + +  ++R  A   V +        L +        +  L+ D    VR  +   ++ +
Sbjct: 181 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVML 240

Query: 172 APILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 229
             +        +  ++   L   +D+  +V L        + +      +    LP ++ 
Sbjct: 241 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIP 300

Query: 230 LAEDRHWRVRLAII---------EYIPLLASQLGVGFFDDKLGALCM------------- 267
           +  +      + II         E IP     +   F   +  A                
Sbjct: 301 VLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDD 360

Query: 268 ---QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI 324
                     +++R  +A  +  LA  +  D  + HI+P + E++ +  ++ + + +  +
Sbjct: 361 EIDDDDTISDWNLRKCSAAALDVLANVY-RDELLPHILPLLKELLFHHEWVVKESGILVL 419

Query: 325 SLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPC 382
             +A      +     +L+P +I    D+   ++      L      V     +  ++P 
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479

Query: 383 LVEL 386
           + EL
Sbjct: 480 MTEL 483

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 35/241 (14%)

Query: 27  EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV 86
            I+          Q    L+  +  G L   +         + +++     K W +    
Sbjct: 519 YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK-WNMLKDE 577

Query: 87  ANQLYELCEAVG------PEPTRSDVVPAYVRLLR--------------------DNEAE 120
              L+ L E +                P Y R +                       + +
Sbjct: 578 DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKD 637

Query: 121 VRIAAAGKVTKICRILN----PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG 176
             I A   ++ +   L       +A  +IL  + +   D    VR +   ++  +     
Sbjct: 638 FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF 697

Query: 177 KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAE 232
           +     I   +PI  + L  EF  V  N    + +++  +GI++      +L  +VE+  
Sbjct: 698 QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIIN 757

Query: 233 D 233
            
Sbjct: 758 R 758

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 10/231 (4%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
             VR +A  NL K  +            ++F    +  +  +  +A++G      + + +
Sbjct: 230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 289

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
             +A          +      ++     L  L   +    T+ D          D++   
Sbjct: 290 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND-------DDDDWN 342

Query: 122 RIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT- 180
              AAG    +      +  + H+LP +KE   +     R A       +          
Sbjct: 343 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 402

Query: 181 --IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 229
             + Q +P  + L+KD    VR      + ++ +++    ++   L  +++
Sbjct: 403 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 453

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 50/368 (13%), Positives = 110/368 (29%), Gaps = 43/368 (11%)

Query: 22  AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR 81
             +K+ ++      T     + + +A   C  +     P+     +  V    S +    
Sbjct: 88  REVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKE 147

Query: 82  VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILNP- 138
                   + +  +    +   ++++ A ++ +R  E    V++AA   +          
Sbjct: 148 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 207

Query: 139 ---ELAIQHILPCVKELSSDSSQHVRSALATVI---MGMAPILGKDATIEQLLPIFLSLL 192
              E     I+  V E +      VR A    +   M +     +      L  I +  +
Sbjct: 208 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 267

Query: 193 KDEFPDVRLNIISKLDQVNQVIGIDLLS-----------------------QSLLPAIVE 229
           K +  +V L  I     V        +                        Q L+P + +
Sbjct: 268 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 327

Query: 230 LAEDR-------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 282
               +        W    A    + LLA+          L  +  + +K+  +  RDAA 
Sbjct: 328 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI-KEHIKNPDWRYRDAAV 386

Query: 283 NNVKRLAEEFGPDWAMQH---IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ 339
                + E   P          +P ++E++ +P  + R T    +  +  ++        
Sbjct: 387 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 446

Query: 340 LLPVVINA 347
            L  ++  
Sbjct: 447 YLAPLLQC 454

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 38/285 (13%), Positives = 81/285 (28%), Gaps = 20/285 (7%)

Query: 35  LTQDDQDSVRLLAVEGCGALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQL 90
             ++  ++V+L A        +  +           I+ V+   +Q    RVR      L
Sbjct: 181 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 240

Query: 91  YELCEAVGP--EPTRSDV-VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 147
            ++        E           +  ++ +  EV +      + +C              
Sbjct: 241 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 300

Query: 148 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 207
                   +S+         ++           + Q L        D+  +        L
Sbjct: 301 EQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDDDWNPCKAAGVCL 351

Query: 208 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC- 266
             +      D++   L P I E  ++  WR R A +     +            +     
Sbjct: 352 MLLATCCEDDIVPHVL-PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 410

Query: 267 --MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI 309
             ++ +KD    +RD AA  V R+ E           +  +L+ +
Sbjct: 411 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 3/119 (2%)

Query: 79  SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 138
                   A     L      +     V+P     +++ +   R AA      I     P
Sbjct: 339 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 398

Query: 139 ELAIQH---ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 194
                     +P + EL  D S  VR   A  +  +  +L + A  +  L   L  L +
Sbjct: 399 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 5   RRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV 64
              AA       AT     +   ++   +E  ++     R  AV   G + +  EP    
Sbjct: 343 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK 402

Query: 65  AH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL 114
                 +P ++   +D S  VR   A  +  +CE +         +   ++ L
Sbjct: 403 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 27/205 (13%), Positives = 73/205 (35%), Gaps = 14/205 (6%)

Query: 24  LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH------ILPVIVNFSQD 77
           L   +     +LT +D  S++ L       L  ++              +        + 
Sbjct: 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK 609

Query: 78  KSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 135
            S  +   V   +  L  ++G   E       P  ++ L   ++ V I A G +  I   
Sbjct: 610 DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669

Query: 136 LNPELA--IQHILPCVKEL--SSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFL 189
           L  +       ++  + ++  + ++ + ++ A+ +V   +A  +G D    +  ++ + +
Sbjct: 670 LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729

Query: 190 SLLKDEFPDVRLNIISKLDQVNQVI 214
           +    +  +  L  +    +V + +
Sbjct: 730 AAQNTKPENGTLEALDYQIKVLEAV 754

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 44/369 (11%), Positives = 106/369 (28%), Gaps = 43/369 (11%)

Query: 26  SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM 85
           +E   + E        ++RL +      L KL          L   V   ++     R +
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSET---QLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60

Query: 86  VANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 145
            A  L     +     T+        ++  + + +++                     + 
Sbjct: 61  AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIK--------------------TNA 100

Query: 146 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD-VRLNII 204
           L  +          + +A A +I  +A I        +L+ I +     E P+ V+   +
Sbjct: 101 LTAL----VSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASL 156

Query: 205 SKLDQVNQVIGIDLLSQ-----SLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGF 257
             L  + +       +      ++L AIV+ A+       VRLA +  +      +    
Sbjct: 157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM 216

Query: 258 FDDKLGALCMQW----LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH 313
             +      MQ      + +   ++ AA   + ++  ++                I    
Sbjct: 217 EREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK 276

Query: 314 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 373
                     +   + +   EI  +  L     +               ++ ++P +   
Sbjct: 277 SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQS----PLQSYNFALSSIKDVVPNLLNL 332

Query: 374 VVEKSIRPC 382
           +  ++  P 
Sbjct: 333 LTRQNEDPE 341

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 43/294 (14%), Positives = 92/294 (31%), Gaps = 45/294 (15%)

Query: 111 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMG 170
            RLL D+ +  RI++A    ++ ++   + A++  +    E  SD +   R   A ++  
Sbjct: 25  FRLLDDHNSLKRISSA----RVLQLRGGQDAVRLAI----EFCSDKNYIRRDIGAFILGQ 76

Query: 171 MAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 230
           +     K         +    L D+   VR   I    Q  +     + S  ++      
Sbjct: 77  IKI--CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 290
           A D+   VR A    I        +         + +    +       A A N+ +   
Sbjct: 133 AFDKSTNVRRATAFAIS------VINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 186

Query: 291 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 350
               D  ++ +  +  E+                              ++L V+ +  K 
Sbjct: 187 SDIRDCFVEMLQDKNEEVRIEAIIGLSY----------------RKDKRVLSVLCDELKK 230

Query: 351 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQALQ 403
               +  ++ +    L         +K++ P L   L +  D ++   A   L+
Sbjct: 231 --NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 43/263 (16%), Positives = 75/263 (28%), Gaps = 40/263 (15%)

Query: 2   PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 61
            + R S+A  L              + + +  E   D     R +     G +    + +
Sbjct: 33  SLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 84

Query: 62  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEV 121
           D V +IL        DKS  VR        + C+          +V        D    V
Sbjct: 85  DNVFNIL--NNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQITAFDKSTNV 140

Query: 122 RIAAAGKVTKICRILNPELAIQ-----------------HILPCVKELSSDSSQHVRSAL 164
           R A A  ++ I       L I                  +I         D    +    
Sbjct: 141 RRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK 200

Query: 165 ATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 224
              +   A I       +++L +    LK     V  +II    +        L  ++LL
Sbjct: 201 NEEVRIEAIIGLSYRKDKRVLSVLCDELKK--NTVYDDIIEAAGE--------LGDKTLL 250

Query: 225 PAIVE-LAEDRHWRVRLAIIEYI 246
           P +   L +     +  + I+ +
Sbjct: 251 PVLDTMLYKFDDNEIITSAIDKL 273

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 33/269 (12%), Positives = 79/269 (29%), Gaps = 15/269 (5%)

Query: 103 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI---QHILPCVKEL--SSDSS 157
            +  +P   +LL D +  V   AA  V ++ +      AI     ++  +     +++  
Sbjct: 15  ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74

Query: 158 QHVRSALATVIMGMAPILGKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLD---QVNQV 213
           +  R    T+        G  A  +   +P  + +L      V    I+ L       + 
Sbjct: 75  ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 214 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS------QLGVGFFDDKLGALCM 267
             + +     L  +V L    + +      + + +LA        + +     +     M
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 268 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLL 327
           +    +      +    V  +     P       +  +   + +P        L  +  L
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 328 APVMGSEITCSQLLPVVINASKDRVPNIK 356
           +     +     LL  ++        N+ 
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVV 283

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.91
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.9
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.89
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.89
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.88
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.88
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.88
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.86
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.84
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.79
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.79
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.77
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.73
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.72
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.62
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.55
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.44
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.39
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.31
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.3
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.17
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.1
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.99
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.98
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.27
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.18
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.22
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	95.91
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.46
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	93.6
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	93.0
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	92.69
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	92.53
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	90.88
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	90.62
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	89.85
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	89.84
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	88.55
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	83.64
d1w9ca_	321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	80.79

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-47  Score=362.17  Aligned_cols=406  Identities=57%  Similarity=0.940  Sum_probs=381.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCCh
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW   80 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~   80 (412)
                      +|.||+.++..++.+++..+.+..+..++|.+..+.+|+++.+|..|+.++..++..++.+.....++|.+.++++|++|
T Consensus       177 ~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~  256 (588)
T d1b3ua_         177 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW  256 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSH
T ss_pred             CHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccH
Confidence            47899999999999999888888888999999999999999999999999999999998888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH----HHHHhhhhhHHHhccCC
Q 015150           81 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDS  156 (412)
Q Consensus        81 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~  156 (412)
                      .||..++++|+.++..++.+....+++|.+..+++|++++||..++..++.+++.++..    .+.+.++|.+....+|.
T Consensus       257 ~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~  336 (588)
T d1b3ua_         257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA  336 (588)
T ss_dssp             HHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS
T ss_pred             HHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            99999999999999988877766789999999999999999999999999999876543    45677899999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCc
Q 015150          157 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW  236 (412)
Q Consensus       157 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~  236 (412)
                      ++.||..++.++..++..+|.+...+.++|.+...++|+++++|..++.+++.+...++...+.+.++|.+....+|.+|
T Consensus       337 ~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~  416 (588)
T d1b3ua_         337 NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW  416 (588)
T ss_dssp             CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSH
T ss_pred             ChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccH
Confidence            99999999999999998899888888999999999999999999999999999999888887788999999999999999


Q ss_pred             hHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHH
Q 015150          237 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY  316 (412)
Q Consensus       237 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~  316 (412)
                      ++|.+++..++.++..+|.+.+.+.+.|.+..++.|+.+.||.+|+.+++.+++.+|.++..+.++|.+.+..++++|.+
T Consensus       417 ~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~  496 (588)
T d1b3ua_         417 RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLH  496 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHH
Confidence            99999999999999999998888899999999999999999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHH
Q 015150          317 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF  396 (412)
Q Consensus       317 r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~  396 (412)
                      |.+++.+++.+.+.++.+.+.++++|.++++++|++++||..++++++.+...+++..+.+.+.|.+.++.+|+|.+||.
T Consensus       497 R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~~D~d~dVr~  576 (588)
T d1b3ua_         497 RMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKY  576 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999999988888899999999999999999999999999999999988888889999999999999999999


Q ss_pred             HHHHHHHHhH
Q 015150          397 FATQALQSKD  406 (412)
Q Consensus       397 ~a~~al~~~~  406 (412)
                      .|.+|++.+.
T Consensus       577 ~A~~al~~l~  586 (588)
T d1b3ua_         577 FAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999999874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-42  Score=325.22  Aligned_cols=408  Identities=22%  Similarity=0.325  Sum_probs=305.7

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChH
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR   81 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~   81 (412)
                      +.||.+|+++++.++...+++.+...+.|++..+..+++...|..|+..++.++...++. ....+++.+.++++|+++.
T Consensus       101 ~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~-~~~~l~~~~~~l~~D~~~~  179 (588)
T d1b3ua_         101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPM  179 (588)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHhccCCHH
Confidence            578999999999999888877778889999999999888888999999999998877654 5677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHH
Q 015150           82 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVR  161 (412)
Q Consensus        82 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr  161 (412)
                      ||+.++..++.++...+.+.....++|.+..+++|+++.||..++.++..++...+++...+.++|.+..+++|++|.||
T Consensus       180 VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr  259 (588)
T d1b3ua_         180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVR  259 (588)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHH
Confidence            99999999999999888777778899999999999999999999999999999999888888899999999999999999


Q ss_pred             HHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh----hHHhhHHHHHHHHhcCCCch
Q 015150          162 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWR  237 (412)
Q Consensus       162 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~----~~~~~~~~~l~~~~~d~~~~  237 (412)
                      ..++++++.++..++.+.....++|.+..+++|+++++|..++.+++.++..++.+    ...+.++|.+....+|.+|.
T Consensus       260 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~  339 (588)
T d1b3ua_         260 YMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQH  339 (588)
T ss_dssp             HHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHH
T ss_pred             HHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChH
Confidence            99999999999988888777889999999999999999999999999988776532    23355667777777777777


Q ss_pred             HHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHH
Q 015150          238 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR  317 (412)
Q Consensus       238 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r  317 (412)
                      +|..++..+..++..+|.....+.+.|.+...++|++++||..++.+++.+...+|.+...+.++|.+.+..+|++|++|
T Consensus       340 vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r  419 (588)
T d1b3ua_         340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR  419 (588)
T ss_dssp             HHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHH
Confidence            77777666666666655554445555555555555555555555555555555444444444444444444444445555


Q ss_pred             HHHHHHHHHh---------------------------------------ccccchhHHHHhhHHHHHhhcCCCCchHHHH
Q 015150          318 MTILQAISLL---------------------------------------APVMGSEITCSQLLPVVINASKDRVPNIKFN  358 (412)
Q Consensus       318 ~~~~~~l~~l---------------------------------------~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~  358 (412)
                      .+++.+++.+                                       ...+|.++....++|.+..+++|+++.+|.+
T Consensus       420 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~  499 (588)
T d1b3ua_         420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMT  499 (588)
T ss_dssp             HHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            5555554444                                       4444444444444555555555555555555


Q ss_pred             HHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          359 VAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       359 ~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      ++.+++.+...++.+.+.+.++|.+.++++|++++||..++++++.+....+
T Consensus       500 ~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~  551 (588)
T d1b3ua_         500 TLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence            5555555554444445556677777777777777888877777777766543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.3e-23  Score=204.99  Aligned_cols=408  Identities=16%  Similarity=0.122  Sum_probs=286.1

Q ss_pred             chhHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhh-
Q 015150            2 PMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNF-   74 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l-   74 (412)
                      +.||+.+++++..+....+..  .....+++.+...+.|+++.+|..|++.+..+++.-..    ....+.+.|.+... 
T Consensus       227 ~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~  306 (888)
T d1qbkb_         227 PEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGM  306 (888)
T ss_dssp             SSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSS
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            678999999998877654431  12344666666778888999999998877666542100    00111122211110 


Q ss_pred             -----------------------------------------------------------ccCCChHHHHHHHHHHHHHHH
Q 015150           75 -----------------------------------------------------------SQDKSWRVRYMVANQLYELCE   95 (412)
Q Consensus        75 -----------------------------------------------------------~~d~~~~vR~~~~~~l~~l~~   95 (412)
                                                                                 ..+..|.+|+.+..+|..++.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~  386 (888)
T d1qbkb_         307 KYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLAN  386 (888)
T ss_dssp             CCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTT
T ss_pred             hcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhh
Confidence                                                                       001236689999998888887


Q ss_pred             HhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCc
Q 015150           96 AVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAP  173 (412)
Q Consensus        96 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  173 (412)
                      ..+++. .+.++|.+.+.+.+++|.+|.+|+.+++.+++...+.  .+...++|.+...++|+++.||..++++++.++.
T Consensus       387 ~~~~~i-l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~  465 (888)
T d1qbkb_         387 VYRDEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH  465 (888)
T ss_dssp             TCCSSS-HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHH
T ss_pred             hhHHHH-HHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            666554 4678888889999999999999999999988755433  2345688889999999999999999999999886


Q ss_pred             ccCh---hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh--hHHhhHHHHHHHHhcCCCchHHHHHHHHhhH
Q 015150          174 ILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  248 (412)
Q Consensus       174 ~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~  248 (412)
                      .+..   +.+...+++.+...+.|+++.||.+++.++..+.+..+..  .+.+.+++.+...+.+.+.+.+..+..+++.
T Consensus       466 ~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~  545 (888)
T d1qbkb_         466 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGT  545 (888)
T ss_dssp             HHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5532   2334567888888889999999999999999998776642  2345667777777777776777666666666


Q ss_pred             HHhhhChhh----HHHHHHHHHHHHhc-----------------------------------------------------
Q 015150          249 LASQLGVGF----FDDKLGALCMQWLK-----------------------------------------------------  271 (412)
Q Consensus       249 l~~~~~~~~----~~~~l~~~l~~~l~-----------------------------------------------------  271 (412)
                      ++...+...    +.+.++|.+....+                                                     
T Consensus       546 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  625 (888)
T d1qbkb_         546 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN  625 (888)
T ss_dssp             HHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            665443321    22233333322211                                                     


Q ss_pred             -------CchhHHHHHHHHHHHHHHHHhChhh---h-hhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHH
Q 015150          272 -------DKVYSIRDAAANNVKRLAEEFGPDW---A-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCS  338 (412)
Q Consensus       272 -------d~~~~vr~~a~~~l~~l~~~~~~~~---~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~  338 (412)
                             +.+.++...++..++.+++.+|...   . ...+++.+...+.+.++.+|+.+...++.++..++..  .+.+
T Consensus       626 ~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~  705 (888)
T d1qbkb_         626 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA  705 (888)
T ss_dssp             HCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                   1123334444445555555554421   1 1236777888888999999999999999998877765  5788


Q ss_pred             hhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCCCc--cHHHHHHHHHHHhHHhhh
Q 015150          339 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDV--DVRFFATQALQSKDQVMM  410 (412)
Q Consensus       339 ~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~--~vr~~a~~al~~~~~~~~  410 (412)
                      .++|.+.+.++++.+.|+..+++++|.++...|.+  .+.+.+++.|.+.+++++.  .|+.+++.++|.++...+
T Consensus       706 ~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p  781 (888)
T d1qbkb_         706 DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP  781 (888)
T ss_dssp             HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCH
Confidence            89999999999999999999999999999888765  3556788888887776554  499999999999876543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.3e-21  Score=189.01  Aligned_cols=403  Identities=17%  Similarity=0.136  Sum_probs=296.2

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhccCCCh
Q 015150            3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSW   80 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~d~~~   80 (412)
                      .+|+.++.+++.++..++. .+.+.+++.+.+.++++++..|.+|+.+++.+++...+  ....+.++|.+...++|+++
T Consensus       372 ~~r~~a~~~L~~l~~~~~~-~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~  450 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA  450 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCS-SSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCH
T ss_pred             hHHHHHHHHHhhHhhhhHH-HHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCH
Confidence            4688899999888876664 45678999999999999999999999999999876543  23456688999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhhhhHHHhccC
Q 015150           81 RVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD  155 (412)
Q Consensus        81 ~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d  155 (412)
                      .||..++.++++++.......   +...+++.+...+.|+++.||..|+.++..+.+..++.  ++...+++.+...+.+
T Consensus       451 ~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~  530 (888)
T d1qbkb_         451 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK  530 (888)
T ss_dssp             HHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh
Confidence            999999999999998765443   34568888999999999999999999999999877654  3456677788888888


Q ss_pred             CcHHHHHHHHHHHHhcCcccChh----HHHHhhHHHHHHhh---cccChHHHHHHHHHHHHHHHhhchhhH------Hhh
Q 015150          156 SSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLL------SQS  222 (412)
Q Consensus       156 ~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l---~d~~~~vr~~~~~~l~~i~~~~~~~~~------~~~  222 (412)
                      .....+..+..+++.++...+..    ...+.++|.+....   .+++. .+...+.+++.+...++....      .+.
T Consensus       531 ~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~  609 (888)
T d1qbkb_         531 YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQR  609 (888)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Confidence            78888888888888777655433    34456666665543   23333 334566777777766653211      111


Q ss_pred             HHHHHHHH-------------hcCCCchHHHHHHHHhhHHHhhhChhhH--H--HHHHHHHHHHhcCchhHHHHHHHHHH
Q 015150          223 LLPAIVEL-------------AEDRHWRVRLAIIEYIPLLASQLGVGFF--D--DKLGALCMQWLKDKVYSIRDAAANNV  285 (412)
Q Consensus       223 ~~~~l~~~-------------~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~--~~l~~~l~~~l~d~~~~vr~~a~~~l  285 (412)
                      ++..+...             ....+......+...++.+++.+|....  .  ..+.+.+...++|.++.||+.|+..+
T Consensus       610 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~ll  689 (888)
T d1qbkb_         610 CVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALL  689 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHH
Confidence            12221111             1234556677777888888887775431  1  23788889999999999999999999


Q ss_pred             HHHHHHhChh--hhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCC--chHHHHH
Q 015150          286 KRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV--PNIKFNV  359 (412)
Q Consensus       286 ~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~--~~vR~~~  359 (412)
                      +.+....+..  .+.+.++|.+.+.+.++.+.++..+++++|.++..+|.+  +|.+.+++.+...+++++  .+|+..+
T Consensus       690 gdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~  769 (888)
T d1qbkb_         690 GDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENT  769 (888)
T ss_dssp             HHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHH
Confidence            9999877654  235678889999999999999999999999999888765  577889999999998754  4589999


Q ss_pred             HHHHHHHhhhhchHH--HHhhHHH-HHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          360 AKVLQSLIPIVDQSV--VEKSIRP-CLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       360 ~~~l~~l~~~~~~~~--~~~~i~~-~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +.++|.++...+...  +.+.+++ .+..+..-.|.+-+..+..++..+.+
T Consensus       770 ~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~  820 (888)
T d1qbkb_         770 AITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMIS  820 (888)
T ss_dssp             HHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence            999999987655432  3344444 44444333455556666666666554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.1e-20  Score=167.81  Aligned_cols=380  Identities=15%  Similarity=0.164  Sum_probs=273.8

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccC-CchHHHHHHHHhHHHHhhccCc--------------hhhhhh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP--------------QDCVAH   66 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~i~~~~~~--------------~~~~~~   66 (412)
                      +.+|..|-+.+..+...-++ .+...+..+   +.++ .+..+|..|+..+.+......+              +..+..
T Consensus        14 ~~~r~~A~~~L~~~~~~~~~-~~~~~l~~i---l~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~   89 (458)
T d1ibrb_          14 RLELEAAQKFLERAAVENLP-TFLVELSRV---LANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARRE   89 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCch-HHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHH
Confidence            57899999999988874322 222222222   3333 3467999998888766654321              223455


Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC--ChHHHHHHHHHHHHHHHHhhCHHH---H
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPEL---A  141 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~---~  141 (412)
                      +...+.+...+++..+| .++.+++.++........++++++.+.+.+.+  .++.++..++.++..+.....+..   .
T Consensus        90 i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  168 (458)
T d1ibrb_          90 VKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK  168 (458)
T ss_dssp             HHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG
T ss_pred             HHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhh
Confidence            77777777777766544 56788888877665556678899999988754  457889999999999887765542   3


Q ss_pred             HHhhhhhHHHhcc--CCcHHHHHHHHHHHHhcCcccCh----hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc
Q 015150          142 IQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  215 (412)
Q Consensus       142 ~~~~~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~  215 (412)
                      ...+++.+...+.  +.+..+|..++.++..+......    ......+.+.+...+.++++++|..+..++..+++..+
T Consensus       169 ~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~  248 (458)
T d1ibrb_         169 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  248 (458)
T ss_dssp             HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence            3446677777664  46789999999999988865533    22334567778888899999999999999999987755


Q ss_pred             hh---hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC-----------------------hhhHHHHHHHHHHHH
Q 015150          216 ID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-----------------------VGFFDDKLGALCMQW  269 (412)
Q Consensus       216 ~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-----------------------~~~~~~~l~~~l~~~  269 (412)
                      ..   .+.+.+.+.+.....+.+..++..++..+..+++...                       .....+.+.|.+...
T Consensus       249 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  328 (458)
T d1ibrb_         249 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  328 (458)
T ss_dssp             GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhh
Confidence            32   2223345556667788888999988888877764321                       011234566666665


Q ss_pred             hc-------CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHh
Q 015150          270 LK-------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQ  339 (412)
Q Consensus       270 l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~  339 (412)
                      +.       |.++.+|..+..++..+....|.+ ..+.+++.+.+.+.+++|.+|.+++.+++.+++.+..+   .+...
T Consensus       329 ~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~  407 (458)
T d1ibrb_         329 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ  407 (458)
T ss_dssp             TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTT
T ss_pred             hhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHH
Confidence            43       445679999999999999988766 45678899999999999999999999999999766543   46788


Q ss_pred             hHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHHHH-hhHHHHHHhhc
Q 015150          340 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE-KSIRPCLVELS  387 (412)
Q Consensus       340 il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~-~~i~~~l~~l~  387 (412)
                      ++|.+...++|+++.||.+|+++++.++..++..... ..+.|.+..++
T Consensus       408 i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         408 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  456 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence            9999999999999999999999999999877654332 33444444443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.6e-19  Score=177.51  Aligned_cols=409  Identities=15%  Similarity=0.182  Sum_probs=257.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCc-hHHHHHHHHhHHHHhhccCch--hhhh---hhHHHHHhhc
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEPQ--DCVA---HILPVIVNFS   75 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~r~~a~~~l~~i~~~~~~~--~~~~---~l~~~l~~l~   75 (412)
                      +.||..++.+++.++....++..|+++++.+...+++++ +.+|..++.+++.+++..++.  ....   .+++.+.+..
T Consensus       109 ~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~  188 (861)
T d2bpta1         109 PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGA  188 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999865555568899998888776554 567889999999998876542  1222   3444444433


Q ss_pred             --cCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH--HHHHh-hh
Q 015150           76 --QDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQH-IL  146 (412)
Q Consensus        76 --~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~-~~  146 (412)
                        .+.+..+|..++.++..+...+....    ....+++.+.+.++++++.+|..++.++..+++..++.  .+... +.
T Consensus       189 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~  268 (861)
T d2bpta1         189 QSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALY  268 (861)
T ss_dssp             STTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHH
T ss_pred             hcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              45778999999999998876544222    23456777888899999999999999999998876543  22222 33


Q ss_pred             hhHHHhccCCcHHHHHHHHHHHHhcCcccCh-------------------hHHHHhhHHHHHHhhc-------ccChHHH
Q 015150          147 PCVKELSSDSSQHVRSALATVIMGMAPILGK-------------------DATIEQLLPIFLSLLK-------DEFPDVR  200 (412)
Q Consensus       147 ~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~l~-------d~~~~vr  200 (412)
                      +......++.++.+|..+.+.+..++.....                   ......++|.+...+.       +++..+|
T Consensus       269 ~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~  348 (861)
T d2bpta1         269 ALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVS  348 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHH
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHH
Confidence            3444556788888998888777655432100                   1112344555544442       1234567


Q ss_pred             HHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh---HHHHHHHHHHHHhcCchhHH
Q 015150          201 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSI  277 (412)
Q Consensus       201 ~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~v  277 (412)
                      ..+...+..+....+...+ +.+.+.+.....+.+|+.|.+++..++.+....+...   +.+.++|.+.+.+.|+++.|
T Consensus       349 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~v  427 (861)
T d2bpta1         349 MSAGACLQLFAQNCGNHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQV  427 (861)
T ss_dssp             HHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHHHHhhcchhhh-hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhh
Confidence            7777777776666554322 4445555555566666666666666655555443322   22345555566666666666


Q ss_pred             HHHHHHHHHHHHHHhChhh-------------------------------------------------------------
Q 015150          278 RDAAANNVKRLAEEFGPDW-------------------------------------------------------------  296 (412)
Q Consensus       278 r~~a~~~l~~l~~~~~~~~-------------------------------------------------------------  296 (412)
                      |.+++.+++.+.+.++...                                                             
T Consensus       428 r~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (861)
T d2bpta1         428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA  507 (861)
T ss_dssp             HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHH
Confidence            6666665555544322100                                                             


Q ss_pred             --------------------------------------------------------------------------------
Q 015150          297 --------------------------------------------------------------------------------  296 (412)
Q Consensus       297 --------------------------------------------------------------------------------  296 (412)
                                                                                                      
T Consensus       508 ~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  587 (861)
T d2bpta1         508 NRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS  587 (861)
T ss_dssp             TCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcc
Confidence                                                                                            


Q ss_pred             ------hhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          297 ------AMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       297 ------~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                            +.+.+++.+.+.+. .+++.+|..++.+++.++..+|.+  .|.+.++|.+...++|.++.||..++.+++.++
T Consensus       588 ~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~  667 (861)
T d2bpta1         588 PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS  667 (861)
T ss_dssp             GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                  00001111111111 223456666677777776666654  466778888888888888888888888888887


Q ss_pred             hhhchH--HHHhhHHHHHHhhcCCC--CccHHHHHHHHHHHhHHhhhC
Q 015150          368 PIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS  411 (412)
Q Consensus       368 ~~~~~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~~~~~~~~  411 (412)
                      ...+..  .+.+.+++.+...+.++  +.++|..+..+++.++..+|+
T Consensus       668 ~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~  715 (861)
T d2bpta1         668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             HHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            776654  34556777776655443  457888888888888877764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-20  Score=190.93  Aligned_cols=408  Identities=14%  Similarity=0.167  Sum_probs=302.8

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCch--------hhhhhhHHHHH
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--------DCVAHILPVIV   72 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~--------~~~~~l~~~l~   72 (412)
                      +|.||..|+++++.++...+.+. ...+++.+...+.+++...|..+..++..+...++..        .....+.+.+.
T Consensus        58 ~~~Vq~~A~k~l~~l~~~~~~~~-~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~  136 (1207)
T d1u6gc_          58 NGEVQNLAVKCLGPLVSKVKEYQ-VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT  136 (1207)
T ss_dssp             SHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCcHhh-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence            37899999999999998877654 4556777666666777788998888888887766532        12233555555


Q ss_pred             hh-ccCCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhH
Q 015150           73 NF-SQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV  149 (412)
Q Consensus        73 ~l-~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  149 (412)
                      .. .+..++.+|..++..++.+...++...  ....+++.+...++|+++.||+.|+.+++.++.+.+.+.+.. +++.+
T Consensus       137 ~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~~l  215 (1207)
T d1u6gc_         137 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVD-LIEHL  215 (1207)
T ss_dssp             HHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTT-HHHHH
T ss_pred             HhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHH
Confidence            44 455788999999999999999888654  345688888889999999999999999999998887764332 33433


Q ss_pred             H-HhccCCcHHHHHHHHHHHHhcCcccChhH--HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhh--HHhhHH
Q 015150          150 K-ELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLL  224 (412)
Q Consensus       150 ~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~~~  224 (412)
                      . .+..+.++.+|..++.+++.++...|...  ....++|.+.+.++++++++|..++.++..+....+.+.  ....++
T Consensus       216 l~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii  295 (1207)
T d1u6gc_         216 LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII  295 (1207)
T ss_dssp             HHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHH
Confidence            3 34466777788888899998887666543  236789999999999999999999999999887654321  112222


Q ss_pred             HHHH-------------------------------------HHhcCCCchHHHHHHHHhhHHHhhhChh--hHHHHHHHH
Q 015150          225 PAIV-------------------------------------ELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGAL  265 (412)
Q Consensus       225 ~~l~-------------------------------------~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~  265 (412)
                      +.+.                                     ....|..|++|..+++++..+....+..  .+...+.|.
T Consensus       296 ~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~  375 (1207)
T d1u6gc_         296 NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPA  375 (1207)
T ss_dssp             HHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHH
T ss_pred             HHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            2111                                     1134568999999999999998776542  234557888


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHhChh---------------------hhhhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150          266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPD---------------------WAMQHIVPQVLEMINNPHYLYRMTILQAI  324 (412)
Q Consensus       266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---------------------~~~~~~l~~l~~~~~~~~~~~r~~~~~~l  324 (412)
                      +...+.|.++.||..++.++..+....+..                     .....+++.+.+.+.+.+..+|..++..+
T Consensus       376 L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l  455 (1207)
T d1u6gc_         376 LISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNML  455 (1207)
T ss_dssp             HHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            899999999999999999999988765321                     11234667777788899999999999999


Q ss_pred             HHhccccchh--HHHHhhHHHHHhhcCCCCc--hHHHHHHHHHHHHhhhhchH---HHHhhHHHHHHhhcCCCCccHHHH
Q 015150          325 SLLAPVMGSE--ITCSQLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFF  397 (412)
Q Consensus       325 ~~l~~~~~~~--~~~~~il~~l~~~l~d~~~--~vR~~~~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~  397 (412)
                      ..+....+..  .+...+++.+...+.|+..  .+|..++..+..+....+++   .+...+.+.+.....|+...++..
T Consensus       456 ~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~  535 (1207)
T d1u6gc_         456 TELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE  535 (1207)
T ss_dssp             HHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHH
Confidence            9988766543  4667788888888887644  57888999999888766654   345678888888899999999999


Q ss_pred             HHHHHHHhHHhhh
Q 015150          398 ATQALQSKDQVMM  410 (412)
Q Consensus       398 a~~al~~~~~~~~  410 (412)
                      +..+++.+...++
T Consensus       536 al~~~~~l~~~l~  548 (1207)
T d1u6gc_         536 ALLVTQQLVKVIR  548 (1207)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998887654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-20  Score=190.54  Aligned_cols=376  Identities=15%  Similarity=0.147  Sum_probs=282.2

Q ss_pred             HHhccCCchHHHHHHHHhHHHHhhccC---chhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHH
Q 015150           33 EELTQDDQDSVRLLAVEGCGALGKLLE---PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPA  109 (412)
Q Consensus        33 ~~l~~~~~~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~  109 (412)
                      .+-++|+++.+|.+|+..|........   ++.....+++.++++++|+++.||..++++|+.++...+.+. ...+++.
T Consensus         9 l~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~-~~~l~~~   87 (1207)
T d1u6gc_           9 LEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ-VETIVDT   87 (1207)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH-HHHHHHH
T ss_pred             HHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh-HHHHHHH
Confidence            334788899999999988877664321   234566799999999999999999999999999988765433 3567888


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHhhCHH--------HHHHhhhhhHHHhc-cCCcHHHHHHHHHHHHhcCcccChhH-
Q 015150          110 YVRLLRDNEAEVRIAAAGKVTKICRILNPE--------LAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDA-  179 (412)
Q Consensus       110 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~-  179 (412)
                      +...+.+++..+|..+..++..+...++..        .....+++.+.... +..++.+|..++..++.+...+|... 
T Consensus        88 L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~  167 (1207)
T d1u6gc_          88 LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV  167 (1207)
T ss_dssp             HHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT
T ss_pred             HHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhH
Confidence            888788888999999999998887766432        23344555555544 55788999999999998887776432 


Q ss_pred             -HHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHH-HHhcCCCchHHHHHHHHhhHHHhhhChhh
Q 015150          180 -TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGVGF  257 (412)
Q Consensus       180 -~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  257 (412)
                       ....+++.+...+.++++.||..++.+++.++...+.+.+ ..+++.+. .+..+.++.+|..++.+++.+++..|...
T Consensus       168 ~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~  246 (1207)
T d1u6gc_         168 NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI  246 (1207)
T ss_dssp             TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGG
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhh
Confidence             2456888888899999999999999999999988776554 34444444 45567788888889999999998877643


Q ss_pred             --HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhh--hhhhhHHHHHh--------------------------
Q 015150          258 --FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLE--------------------------  307 (412)
Q Consensus       258 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~--------------------------  307 (412)
                        +.+.++|.+.+.+++++.++|+.++.++..+....+.+.  ....+++.+..                          
T Consensus       247 ~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~  326 (1207)
T d1u6gc_         247 GEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD  326 (1207)
T ss_dssp             TTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------------
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccc
Confidence              236689999999999999999999999999987665321  11222222221                          


Q ss_pred             -----------hhcCCchHHHHHHHHHHHHhccccchh--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch--
Q 015150          308 -----------MINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--  372 (412)
Q Consensus       308 -----------~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~--  372 (412)
                                 ...+.+|.+|.+++.+++.+....+..  .+...++|.+...+.|++++||..++.+++.+....+.  
T Consensus       327 ~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~  406 (1207)
T d1u6gc_         327 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQ  406 (1207)
T ss_dssp             ---------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC-
T ss_pred             hhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchh
Confidence                       123467999999999999998766643  46778999999999999999999999999988654321  


Q ss_pred             -------------------HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          373 -------------------SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       373 -------------------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                                         ......+++.+.+...+++..+|..+...+..+....+
T Consensus       407 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~  463 (1207)
T d1u6gc_         407 SWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP  463 (1207)
T ss_dssp             -----------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred             hhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcc
Confidence                               12234577777888899999999999999999887654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7.8e-18  Score=165.27  Aligned_cols=402  Identities=13%  Similarity=0.098  Sum_probs=287.4

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccC--CchHHHHHHHHhHHHHhhccC---------------chhhh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD--DQDSVRLLAVEGCGALGKLLE---------------PQDCV   64 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~--~~~~~r~~a~~~l~~i~~~~~---------------~~~~~   64 (412)
                      +.+|+.|-+.|..+.....+ .    ++..+...+.+  .+..+|..|+..+.+......               +.+.+
T Consensus        19 ~~~r~~Ae~~L~~~~~~~~~-~----~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~   93 (861)
T d2bpta1          19 QNIRLTSETQLKKLSNDNFL-Q----FAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAK   93 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHCHH-H----HHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCch-H----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHH
Confidence            67899999999887654222 2    23333333433  346789999888776554321               12234


Q ss_pred             hhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-hHHHHHHHHHHHHHHHHhhCHH--HH
Q 015150           65 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE--LA  141 (412)
Q Consensus        65 ~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~  141 (412)
                      ..+...+.+.+.+++..+|..++.+++.++..-.++..|+++++.+.+.+.++ ...+|..++.++..+++..++.  ..
T Consensus        94 ~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          94 NQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            45666777778899999999999999999987655556889999999988754 4678999999999998776543  11


Q ss_pred             ---HHhhhhhHHHhc--cCCcHHHHHHHHHHHHhcCcccChh----HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHH
Q 015150          142 ---IQHILPCVKELS--SDSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  212 (412)
Q Consensus       142 ---~~~~~~~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~  212 (412)
                         ...+++.+.+.+  .+.+..+|..+..++..+...++..    .....+++.+...++++++++|..+..++..++.
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence               122333333332  4678899999999999887766443    2334567778888899999999999999999987


Q ss_pred             hhchhh---HHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh-------------------hhHHHHHHHHHHHHh
Q 015150          213 VIGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-------------------GFFDDKLGALCMQWL  270 (412)
Q Consensus       213 ~~~~~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~l  270 (412)
                      ..+...   +.+.+.+......++.++.+|..++..+..++.....                   ......+.|.+...+
T Consensus       254 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l  333 (861)
T d2bpta1         254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL  333 (861)
T ss_dssp             HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            765321   1122333445566788899999988888776543210                   112345667777665


Q ss_pred             c-------CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhh
Q 015150          271 K-------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQL  340 (412)
Q Consensus       271 ~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~i  340 (412)
                      .       +..+.+|..+..++..+....+.+ ....+.+.+.....+.+|..|.+++.+++.+....+..   .+.+.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~  412 (861)
T d2bpta1         334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQA  412 (861)
T ss_dssp             TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHHHhhcchh-hhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence            4       345679999999999999888755 34556777778888999999999999999999877764   466789


Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHhhhhchHH----HHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          341 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       341 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      +|.+.+.+.|+++.||..++++++.+...+++..    ....+++.+.....+ ++.++..+..++..+...+.
T Consensus       413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~  485 (861)
T d2bpta1         413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLA  485 (861)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999988776542    234455555554443 56788888888888776553

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-18  Score=158.69  Aligned_cols=375  Identities=14%  Similarity=0.116  Sum_probs=265.5

Q ss_pred             HHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC--CChHHHHHHHHHHHHHHHHhC-------
Q 015150           28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVG-------   98 (412)
Q Consensus        28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d--~~~~vR~~~~~~l~~l~~~~~-------   98 (412)
                      +.+++..++ +++..+|..|-+.+..+...-+     +..+..+...+.|  .+..+|..++-.|.+......       
T Consensus         2 l~~il~~~~-s~d~~~r~~A~~~L~~~~~~~~-----~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~   75 (458)
T d1ibrb_           2 LITILEKTV-SPDRLELEAAQKFLERAAVENL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   75 (458)
T ss_dssp             HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHHHh-CcCHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence            455655555 5677899999999988886522     2334444444333  457899999888876653221       


Q ss_pred             -------CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhcc--CCcHHHHHHHHHHHH
Q 015150           99 -------PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS--DSSQHVRSALATVIM  169 (412)
Q Consensus        99 -------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~--d~~~~vr~~~~~~l~  169 (412)
                             .+.....+.+.+.+.+.+++..+| .++.++..++....+......+++.+...+.  +.++.++..++.+++
T Consensus        76 ~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  154 (458)
T d1ibrb_          76 QQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG  154 (458)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             hhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence                   112234566677778888776555 4566777766653333222346666766654  356788888999888


Q ss_pred             hcCcccChhH---HHHhhHHHHHHhhcc--cChHHHHHHHHHHHHHHHhhch----hhHHhhHHHHHHHHhcCCCchHHH
Q 015150          170 GMAPILGKDA---TIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGI----DLLSQSLLPAIVELAEDRHWRVRL  240 (412)
Q Consensus       170 ~l~~~~~~~~---~~~~l~~~l~~~l~d--~~~~vr~~~~~~l~~i~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~  240 (412)
                      .+....+...   ....+++.+...+.+  .+.++|..+++++..+......    ......+.+.+.....++++++|.
T Consensus       155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (458)
T d1ibrb_         155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV  234 (458)
T ss_dssp             HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHH
Confidence            8776554332   335677888777764  4578999999999988765432    233455778888889999999999


Q ss_pred             HHHHHhhHHHhhhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh-----------------------
Q 015150          241 AIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-----------------------  294 (412)
Q Consensus       241 ~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----------------------  294 (412)
                      .++..+..+++..+..   ...+.+.+.+.....+.+..++..++..+..+.+....                       
T Consensus       235 ~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
T d1ibrb_         235 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA  314 (458)
T ss_dssp             HHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHH
Confidence            9999999998876542   12333555666677888899999999888877653210                       


Q ss_pred             hhhhhhhHHHHHhhhc-------CCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 015150          295 DWAMQHIVPQVLEMIN-------NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  367 (412)
Q Consensus       295 ~~~~~~~l~~l~~~~~-------~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~  367 (412)
                      ....+.+.|.+.+...       +.+|.+|.++..++..++..+|.+ +.+.++|.+.+.++++++.+|.+++.+++.++
T Consensus       315 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~  393 (458)
T d1ibrb_         315 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL  393 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            0112344555555433       345789999999999999888765 57889999999999999999999999999998


Q ss_pred             hhhchH---HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHhhh
Q 015150          368 PIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       368 ~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  410 (412)
                      ....++   .+...++|.+...++|+++.||..|+.+++.+++.++
T Consensus       394 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         394 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             SSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence            754433   3567899999999999999999999999999998775

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.7e-18  Score=153.78  Aligned_cols=373  Identities=12%  Similarity=0.105  Sum_probs=270.1

Q ss_pred             HHhccCCchHHHHHHHHhHHHHhhccCc----hhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCC---CCccc
Q 015150           33 EELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP---EPTRS  104 (412)
Q Consensus        33 ~~l~~~~~~~~r~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~---~~~~~  104 (412)
                      .+.+.++++..+..|+..+..+...-..    ......++|.+.+++++ +++.+|..++.+|..++.....   .....
T Consensus        19 v~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~   98 (434)
T d1q1sc_          19 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG   98 (434)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhc
Confidence            3457777888999999999887654332    22344588999998865 5678999999999998742211   11234


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhccCCc-----HHHHHHHHHHHHhcCccc-
Q 015150          105 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMAPIL-  175 (412)
Q Consensus       105 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~l~~~~-  175 (412)
                      ..+|.+.+++.+++..++..|+.+|..++.....   .......++.+..++...+     ......++.++..+.... 
T Consensus        99 ~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (434)
T d1q1sc_          99 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  178 (434)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCT
T ss_pred             cchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhccc
Confidence            6899999999999999999999999998753221   1234456777777664322     122334455566655432 


Q ss_pred             --ChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHH
Q 015150          176 --GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  250 (412)
Q Consensus       176 --~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~  250 (412)
                        ........++|.+..++++++++++..++.++..+......   ......++|.+.++++++++.++..++..+..++
T Consensus       179 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~  258 (434)
T d1q1sc_         179 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV  258 (434)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHH
Confidence              22233467889999999999999999999999988654221   1123457899999999999999999999988876


Q ss_pred             hhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150          251 SQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAI  324 (412)
Q Consensus       251 ~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l  324 (412)
                      .....   ......+++.+..++++++.++|..++.++..+......   ......++|.+...+.++++.+|..++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l  338 (434)
T d1q1sc_         259 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI  338 (434)
T ss_dssp             TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHH
Confidence            53211   122234566788899999999999999999988753211   122356889999999999999999999999


Q ss_pred             HHhccccchhH----HHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc----hHHH-----HhhHHHHHHhhcCCCC
Q 015150          325 SLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSVV-----EKSIRPCLVELSEDPD  391 (412)
Q Consensus       325 ~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~----~~~~-----~~~i~~~l~~l~~d~~  391 (412)
                      +.++...+.+.    ....+++.+..++++++++++..+++++..+.....    .+.+     ....++.+..+.++++
T Consensus       339 ~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n  418 (434)
T d1q1sc_         339 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN  418 (434)
T ss_dssp             HHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSS
T ss_pred             HHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCC
Confidence            99987655442    244578999999999999999999999998865322    1122     2345677888999999


Q ss_pred             ccHHHHHHHHHHHh
Q 015150          392 VDVRFFATQALQSK  405 (412)
Q Consensus       392 ~~vr~~a~~al~~~  405 (412)
                      .+|+..|.+.+...
T Consensus       419 ~~i~~~a~~il~~~  432 (434)
T d1q1sc_         419 ESVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888753

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.1e-17  Score=158.34  Aligned_cols=400  Identities=15%  Similarity=0.143  Sum_probs=288.1

Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhccC--------------chhhhhh
Q 015150            2 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLE--------------PQDCVAH   66 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~~~--------------~~~~~~~   66 (412)
                      +.+|++|-+.|..+...-.+ .+...+..+   +.++. +..+|..|+-.+.+......              +++.+..
T Consensus        15 ~~~r~~Ae~~L~~~~~~~~~-~f~~~L~~i---~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~   90 (876)
T d1qgra_          15 RLELEAAQKFLERAAVENLP-TFLVELSRV---LANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARRE   90 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcChh-HHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHH
Confidence            47899999999887764322 223333333   33333 45789999988887664311              1234556


Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHHHHHHHHhhCHHHH---
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPELA---  141 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~---  141 (412)
                      +...+.+.+.+++. +|..++.+++.++..--+...|++++|.+.+.+.++  ...+|..++.++..+++...++..   
T Consensus        91 ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~  169 (876)
T d1qgra_          91 VKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK  169 (876)
T ss_dssp             HHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG
T ss_pred             HHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            77777777777654 566788999999876444445889999999987544  478999999999999988776533   


Q ss_pred             HHhhhhhHHHhcc--CCcHHHHHHHHHHHHhcCcccChh----HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc
Q 015150          142 IQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  215 (412)
Q Consensus       142 ~~~~~~~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~  215 (412)
                      .+.+++.+...+.  +.+..+|..+..++..........    .....+++.+...+.++++++|..+.+++..+.....
T Consensus       170 ~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~  249 (876)
T d1qgra_         170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  249 (876)
T ss_dssp             HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence            3446677776663  466889999999988776654332    2334567777888889999999999999999987754


Q ss_pred             hh---hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhC-----------------------hhhHHHHHHHHHHHH
Q 015150          216 ID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-----------------------VGFFDDKLGALCMQW  269 (412)
Q Consensus       216 ~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-----------------------~~~~~~~l~~~l~~~  269 (412)
                      ..   .+.+.+.+.+.....+.+..++..++..+..++....                       .....+.+.|.+...
T Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  329 (876)
T d1qgra_         250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  329 (876)
T ss_dssp             GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHH
Confidence            32   1223455666667778888888877776666654210                       112334566666665


Q ss_pred             hc-------CchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHh
Q 015150          270 LK-------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQ  339 (412)
Q Consensus       270 l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~  339 (412)
                      +.       +..+.+|.+|..++..+....+.+ ..+.+++.+.+.+.+++|..|.+++..++.+...++..   .+...
T Consensus       330 ~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~  408 (876)
T d1qgra_         330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ  408 (876)
T ss_dssp             TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHH
T ss_pred             HHhcccccccccchHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            43       345569999999999999887655 35668888889999999999999999999998776654   45678


Q ss_pred             hHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          340 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       340 il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      +++.+...+.|+++.||.+++++++.++..++..    .+.+.+++.+...+++ ++.|+..+..++..+...
T Consensus       409 ~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~  480 (876)
T d1qgra_         409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999998776543    2345566666666544 688999999999887764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.1e-17  Score=161.32  Aligned_cols=288  Identities=17%  Similarity=0.146  Sum_probs=186.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC--chHHHHHHHHhHHHHhhccCchh---hhhhhHHHHHhhcc-
Q 015150            3 MVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD--QDSVRLLAVEGCGALGKLLEPQD---CVAHILPVIVNFSQ-   76 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~~l~~l~~-   76 (412)
                      .+|+.++.+++.++..--+...|++++|.+.+.+.++  .+.+|..++.++..+++.+.++.   ....+++.+.+.+. 
T Consensus       104 ~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~  183 (876)
T d1qgra_         104 YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK  183 (876)
T ss_dssp             SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcC
Confidence            3466678888888876434345888999888877554  35689999999999988776543   34557777777664 


Q ss_pred             -CCChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhh
Q 015150           77 -DKSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPC  148 (412)
Q Consensus        77 -d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~  148 (412)
                       +++..+|..+++++.........    ......+++.+...+.++++.+|..+++++..+.+..++.   .....+.+.
T Consensus       184 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~  263 (876)
T d1qgra_         184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI  263 (876)
T ss_dssp             TCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHH
T ss_pred             cCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence             45678999999998877654332    1223457777888889999999999999999998766442   112234445


Q ss_pred             HHHhccCCcHHHHHHHHHHHHhcCcccC-----------------------hhHHHHhhHHHHHHhhc-------ccChH
Q 015150          149 VKELSSDSSQHVRSALATVIMGMAPILG-----------------------KDATIEQLLPIFLSLLK-------DEFPD  198 (412)
Q Consensus       149 l~~~~~d~~~~vr~~~~~~l~~l~~~~~-----------------------~~~~~~~l~~~l~~~l~-------d~~~~  198 (412)
                      +.....+.+..++..++..+..++....                       .....+.++|.+...+.       +++..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  343 (876)
T d1qgra_         264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN  343 (876)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCC
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccch
Confidence            5555666777777776665554432110                       01122344455444432       12345


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhh---HHHHHHHHHHHHhcCchh
Q 015150          199 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVY  275 (412)
Q Consensus       199 vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~  275 (412)
                      +|..+...+..+....+.+. .+.+++.+.+.+.+++|+.|.+++..++.+....+...   +...+++.+...+.|+++
T Consensus       344 ~~~~a~~~l~~l~~~~~~~~-~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~  422 (876)
T d1qgra_         344 PCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV  422 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCcc
Confidence            77777777777776655443 35666777777777777777777766666655443322   234566666677777777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015150          276 SIRDAAANNVKRLAEE  291 (412)
Q Consensus       276 ~vr~~a~~~l~~l~~~  291 (412)
                      .||.+++.+++.+.+.
T Consensus       423 ~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         423 VVRDTAAWTVGRICEL  438 (876)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777776666553

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1e-16  Score=147.79  Aligned_cols=377  Identities=10%  Similarity=0.075  Sum_probs=276.6

Q ss_pred             HHHHHHhccCCchHHHHHHHHhHHHHhhcc--Cc--hhhhhhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHHhCC---C
Q 015150           29 MSIFEELTQDDQDSVRLLAVEGCGALGKLL--EP--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E  100 (412)
Q Consensus        29 ~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~--~~--~~~~~~l~~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~---~  100 (412)
                      ++.+...+.+++...+..|+..+..+...-  ++  ......++|.+.++++ +.+..++..++.+|+.++.....   .
T Consensus        78 l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~  157 (503)
T d1wa5b_          78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  157 (503)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344444567777777778888887766431  11  2234557888888876 56788999999999998752211   1


Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccC-
Q 015150          101 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG-  176 (412)
Q Consensus       101 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-  176 (412)
                      .....++|.+..++++++.+++..|+.+++.++.....   ......+++.+..++.+.+..++..+++++..++.... 
T Consensus       158 ~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~  237 (503)
T d1wa5b_         158 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  237 (503)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc
Confidence            12245789999999999999999999999998764322   23344578889999999999999999999998875432 


Q ss_pred             --hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhch---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHh
Q 015150          177 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  251 (412)
Q Consensus       177 --~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~  251 (412)
                        .......++|.+..++.+++++++..++.++..+......   ..+...+++.+..++.++++.++..++.+++.++.
T Consensus       238 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~  317 (503)
T d1wa5b_         238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  317 (503)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHH
Confidence              2234467899999999999999999999999988754221   12334678889999999999999999999988875


Q ss_pred             hhChh---hHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHH
Q 015150          252 QLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAIS  325 (412)
Q Consensus       252 ~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~  325 (412)
                      ..+..   .....+++.+..++.++++.+|..++.+++.++....   .......++|.+...+.+.++.++..+++++.
T Consensus       318 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~  397 (503)
T d1wa5b_         318 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  397 (503)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHH
Confidence            43221   1223467888999999999999999999998864211   11223568899999999999999999999999


Q ss_pred             Hhccccch--h----HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---------HH-----HHhhHHHHHHh
Q 015150          326 LLAPVMGS--E----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------SV-----VEKSIRPCLVE  385 (412)
Q Consensus       326 ~l~~~~~~--~----~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---------~~-----~~~~i~~~l~~  385 (412)
                      .++.....  +    .....+++.+...++..++.+...++.++..+......         ..     -....+..+..
T Consensus       398 nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~  477 (503)
T d1wa5b_         398 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN  477 (503)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHH
Confidence            98754332  1    12455788899999988999999999998887642211         01     11245666778


Q ss_pred             hcCCCCccHHHHHHHHHHHh
Q 015150          386 LSEDPDVDVRFFATQALQSK  405 (412)
Q Consensus       386 l~~d~~~~vr~~a~~al~~~  405 (412)
                      +.++++.+|+..|...+...
T Consensus       478 Lq~~~~~~i~~~A~~il~~~  497 (503)
T d1wa5b_         478 CQQNENDKIYEKAYKIIETY  497 (503)
T ss_dssp             GGGCSCHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHH
Confidence            88999999999988877653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.1e-16  Score=144.73  Aligned_cols=366  Identities=10%  Similarity=0.080  Sum_probs=261.6

Q ss_pred             chhHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHhcc-CCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHh
Q 015150            2 PMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVN   73 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~   73 (412)
                      +.++..|+.++.++......    ......++|.+.++++ ++++.+|..|+.+|..++..-+.   .......+|.+.+
T Consensus        27 ~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~  106 (434)
T d1q1sc_          27 LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS  106 (434)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhh
Confidence            56788899999888753321    1233447788888875 44577999999999999865332   1234558899999


Q ss_pred             hccCCChHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCChH-----HHHHHHHHHHHHHHHhh---CHHHHH
Q 015150           74 FSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEA-----EVRIAAAGKVTKICRIL---NPELAI  142 (412)
Q Consensus        74 l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~~~~---~~~~~~  142 (412)
                      ++++++..++..++.+|++++....   ........++.+..++...+.     .....+..++..++...   ......
T Consensus       107 ~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  186 (434)
T d1q1sc_         107 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV  186 (434)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhh
Confidence            9999999999999999999874211   111223456677777654432     22233444555554432   122445


Q ss_pred             HhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChh---HHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc---h
Q 015150          143 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---I  216 (412)
Q Consensus       143 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~---~  216 (412)
                      ..++|.+..++.+.++.++..++.++..++......   .....++|.+.++++++++.++..++..+..++..-+   .
T Consensus       187 ~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~  266 (434)
T d1q1sc_         187 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ  266 (434)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHH
Confidence            668899999999999999999999999987653221   1124688999999999999999999999998875322   1


Q ss_pred             hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150          217 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG  293 (412)
Q Consensus       217 ~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  293 (412)
                      ..+...+++.+..++.+++..+|..++..+..++.....   ......++|.++..+.++++.+|..|+.+++.+....+
T Consensus       267 ~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~  346 (434)
T d1q1sc_         267 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT  346 (434)
T ss_dssp             HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCC
Confidence            223456678889999999999999999999888753221   11234478889999999999999999999999987765


Q ss_pred             hhhh----hhhhHHHHHhhhcCCchHHHHHHHHHHHHhcccc---ch-hHHH-----HhhHHHHHhhcCCCCchHHHHHH
Q 015150          294 PDWA----MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---GS-EITC-----SQLLPVVINASKDRVPNIKFNVA  360 (412)
Q Consensus       294 ~~~~----~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~-~~~~-----~~il~~l~~~l~d~~~~vR~~~~  360 (412)
                      .+..    ...+++.+..++.++++.++..++.++..+....   +. +.+.     ...++.+..+..++++++|..+.
T Consensus       347 ~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~  426 (434)
T d1q1sc_         347 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL  426 (434)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence            5432    3457889999999999999999999998886432   21 1221     12456666777889999999999


Q ss_pred             HHHHHHh
Q 015150          361 KVLQSLI  367 (412)
Q Consensus       361 ~~l~~l~  367 (412)
                      +.+.+.+
T Consensus       427 ~il~~~f  433 (434)
T d1q1sc_         427 NLIEKYF  433 (434)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            8887653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-15  Score=141.81  Aligned_cols=404  Identities=12%  Similarity=0.065  Sum_probs=270.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhhh-h--HHHHHHHHHHhccC-CchHHHHHHHHhHHHHhhccCc--hhhhhhhHHHHHhhc
Q 015150            2 PMVRRSAATNLGKFAATVEAAH-L--KSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFS   75 (412)
Q Consensus         2 ~~vR~~a~~~l~~~~~~~~~~~-~--~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~   75 (412)
                      +.+|+.++..++.++....... +  ...+++.+..++.+ +++.++..|+.++..++..-..  .......+|.+..++
T Consensus        31 ~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL  110 (529)
T d1jdha_          31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML  110 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHh
Confidence            5689999999999986433222 1  23467777777754 5677899999999988753211  223344788999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhH
Q 015150           76 QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCV  149 (412)
Q Consensus        76 ~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l  149 (412)
                      .++++.++..++.+|.+++.......   .....+|.+..+++++++.++..++.++..++..-.+.   ......++.+
T Consensus       111 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L  190 (529)
T d1jdha_         111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL  190 (529)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHH
Confidence            99999999999999999987544321   23457899999999999999999999999987542211   2233356666


Q ss_pred             HHhc-cCCcHHHHHHHHHHHHhcCcccCh--hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHH
Q 015150          150 KELS-SDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  226 (412)
Q Consensus       150 ~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~  226 (412)
                      ..++ ....+.++..++..+..++..-..  .......++.+..++.+.+..++..++.++..+.............++.
T Consensus       191 ~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~  270 (529)
T d1jdha_         191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGT  270 (529)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchh
Confidence            6666 345678888888888887643222  1223467788889999999999999888888776543332223567899


Q ss_pred             HHHHhcCCCchHHHHHHHHhhHHHhhhCh--h-hHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHHhChh------
Q 015150          227 IVELAEDRHWRVRLAIIEYIPLLASQLGV--G-FFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPD------  295 (412)
Q Consensus       227 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~------  295 (412)
                      +.++++++++.++..++..+..++..-..  . ......++.+...+  ..+.+.++..++.++..+.......      
T Consensus       271 Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~  350 (529)
T d1jdha_         271 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA  350 (529)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHH
T ss_pred             hhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhh
Confidence            99999999999999988888877632111  0 11122445555544  2445678888888887765322111      


Q ss_pred             hhhhhhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccch-----------------------------------------
Q 015150          296 WAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGS-----------------------------------------  333 (412)
Q Consensus       296 ~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~-----------------------------------------  333 (412)
                      ......++.+...+.+++ +.+...++.++..++..-..                                         
T Consensus       351 i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~  430 (529)
T d1jdha_         351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV  430 (529)
T ss_dssp             HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTB
T ss_pred             HHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhccc
Confidence            112234555666555433 45555555555544321100                                         


Q ss_pred             ----------------------h--HHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhc
Q 015150          334 ----------------------E--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELS  387 (412)
Q Consensus       334 ----------------------~--~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~  387 (412)
                                            .  ......++.+..++.++++.+|..++.+|..+...-...  ......++.|..++
T Consensus       431 ~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll  510 (529)
T d1jdha_         431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL  510 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGG
T ss_pred             chHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHh
Confidence                                  0  001225567888888888889999999998886432111  23455778888888


Q ss_pred             CCCCccHHHHHHHHHHHh
Q 015150          388 EDPDVDVRFFATQALQSK  405 (412)
Q Consensus       388 ~d~~~~vr~~a~~al~~~  405 (412)
                      .++++.||..+..+|..+
T Consensus       511 ~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         511 HSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             GCSSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999988765

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=9.3e-17  Score=135.82  Aligned_cols=252  Identities=19%  Similarity=0.140  Sum_probs=186.1

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHH
Q 015150          107 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP  186 (412)
Q Consensus       107 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  186 (412)
                      .+.+.++++|+++.||..|+..|+.++.        +..+|.+.++++|+++.||..++.+++.+....+..   ....+
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~~~~   89 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DNVFN   89 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cchHH
Confidence            4567788899999999999999887653        246788888899999999999999998886543322   12223


Q ss_pred             -HHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHH
Q 015150          187 -IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  265 (412)
Q Consensus       187 -~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  265 (412)
                       .+..+++|+++.||..++.+++.+.....  ...+.+++.+...+.|+++.+|..++..++.+..        +...+.
T Consensus        90 ~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~~  159 (276)
T d1oyza_          90 ILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL  159 (276)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHHH
Confidence             34445788899999999999988876432  2235678888888999999999988877665432        224556


Q ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHH
Q 015150          266 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI  345 (412)
Q Consensus       266 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~  345 (412)
                      +..++.+.++.++..+...++.....      .....+.+...+.++++.+|..++.+++.+.        ....+|.++
T Consensus       160 l~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--------~~~~~~~L~  225 (276)
T d1oyza_         160 LINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVLC  225 (276)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHHH
T ss_pred             HHHhcccccchhhhhHHHHHHhhhcc------ccccchhhhhhhhhhhhhhhhhhccccchhh--------hhhhHHHHH
Confidence            77778899999998887766543321      2345566777888999999999999988764        235677788


Q ss_pred             hhcCCCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhc-CCCCccHHHHHHHHHH
Q 015150          346 NASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS-EDPDVDVRFFATQALQ  403 (412)
Q Consensus       346 ~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~  403 (412)
                      +.+.|+  .||..++.+|+.+..        +..+|.|..++ ++.|.+||..|.++|+
T Consensus       226 ~~l~d~--~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         226 DELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHhCCh--HHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            888764  589999999998863        46788888754 4467899999998875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2e-16  Score=133.72  Aligned_cols=253  Identities=15%  Similarity=0.068  Sum_probs=177.8

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL  146 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  146 (412)
                      -.+.+.++++|+++.||..++..|+.+..        +..+|.+.++++|+++.||..|+.+|+.+........   ...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~---~~~   88 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED---NVF   88 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH---HHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc---chH
Confidence            44456788888999999999998887642        4578888888899999999999888887654322221   122


Q ss_pred             hh-HHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHH
Q 015150          147 PC-VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  225 (412)
Q Consensus       147 ~~-l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~  225 (412)
                      +. +..+++|+++.||..++.+++.+...-.  .....+++.+...+.|+++.+|..++.+++.+..        +..++
T Consensus        89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~  158 (276)
T d1oyza_          89 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  158 (276)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHH
Confidence            32 3345678889999999888887764321  1234677888888888888999888777766542        23456


Q ss_pred             HHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHH
Q 015150          226 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV  305 (412)
Q Consensus       226 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l  305 (412)
                      .+..++.+.++.++......+......      .....+.+...+.+.+..+|..+..+++.+.        ....+|.+
T Consensus       159 ~l~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--------~~~~~~~L  224 (276)
T d1oyza_         159 LLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVL  224 (276)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHH
T ss_pred             HHHHhcccccchhhhhHHHHHHhhhcc------ccccchhhhhhhhhhhhhhhhhhccccchhh--------hhhhHHHH
Confidence            677778888888888776655433221      1235566777788999999999888876532        23466777


Q ss_pred             HhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCC-CCchHHHHHHHHHH
Q 015150          306 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQ  364 (412)
Q Consensus       306 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~  364 (412)
                      .+.+.|++  +|..++.+++.+..        +..+|.+.+.+.+ ++..||..++++|.
T Consensus       225 ~~~l~d~~--vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         225 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhCChH--HHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            77777654  78889999988752        3567777776655 56889999888774

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=2e-15  Score=138.96  Aligned_cols=342  Identities=13%  Similarity=0.091  Sum_probs=257.1

Q ss_pred             hHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhCHH--
Q 015150           67 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE--  139 (412)
Q Consensus        67 l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--  139 (412)
                      -++.+.+..++.+...+..++..+.++...-....    ....++|.+..+++ +.++.++..|+.+|..++...+..  
T Consensus        77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~  156 (503)
T d1wa5b_          77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  156 (503)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            45556667778888888888888877653211111    22457899999887 556889999999999987643222  


Q ss_pred             -HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccCh---hHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhc
Q 015150          140 -LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  215 (412)
Q Consensus       140 -~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~  215 (412)
                       .....++|.+..++++++..++..++++++.++..-..   ......+++.+..++.+.++.++..++.++..++....
T Consensus       157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~  236 (503)
T d1wa5b_         157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK  236 (503)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCc
Confidence             33445889999999999999999999999998753211   12234678889999999999999999999998876533


Q ss_pred             h---hhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 015150          216 I---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  289 (412)
Q Consensus       216 ~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  289 (412)
                      .   ......++|.+..++.+.++.++..++.++..++.....   ......+.+.+..++.+++..++..++.+++.+.
T Consensus       237 ~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~  316 (503)
T d1wa5b_         237 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV  316 (503)
T ss_dssp             SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHH
Confidence            2   223467899999999999999999999999888753321   1223446788889999999999999999999887


Q ss_pred             HHhCh---hhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchh---HHHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150          290 EEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVL  363 (412)
Q Consensus       290 ~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~vR~~~~~~l  363 (412)
                      ...+.   ......+++.+..++.+++..+|..++++++.++......   .....++|.++..+.+..+.+|..+++++
T Consensus       317 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l  396 (503)
T d1wa5b_         317 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI  396 (503)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHH
Confidence            53221   1123457889999999999999999999999997543221   23467889999999999999999999999


Q ss_pred             HHHhhhhch--H----HHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhHHh
Q 015150          364 QSLIPIVDQ--S----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  408 (412)
Q Consensus       364 ~~l~~~~~~--~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  408 (412)
                      ..+......  +    .....+++.+..++...|.++...+.+++..+...
T Consensus       397 ~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~  447 (503)
T d1wa5b_         397 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM  447 (503)
T ss_dssp             HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            999764322  1    12356788888888889999999999998887643

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-14  Score=135.03  Aligned_cols=371  Identities=13%  Similarity=0.039  Sum_probs=256.6

Q ss_pred             hHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchh---hhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhC-
Q 015150           24 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD---CVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVG-   98 (412)
Q Consensus        24 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~-   98 (412)
                      .....+|.+.+++++++..+|..|+..+..++..-....   ....+++.+..++.+ .+..++..++.+|..++..-. 
T Consensus        14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~   93 (529)
T d1jdha_          14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence            344567888889999999999999999999986532211   123467777777654 568899999999998864211 


Q ss_pred             -CCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150           99 -PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  174 (412)
Q Consensus        99 -~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  174 (412)
                       ........+|.+..+++++++.++..|+.+|..++...+..   ......+|.+..+++++++.++..++.++..++..
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh
Confidence             11123456899999999999999999999999998764432   33556889999999999999999999999988643


Q ss_pred             cCh---hHHHHhhHHHHHHhhcc-cChHHHHHHHHHHHHHHHhhc--hhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhH
Q 015150          175 LGK---DATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  248 (412)
Q Consensus       175 ~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~~~~~l~~i~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~  248 (412)
                      -..   .......++.+..++.. +.+.++..+...+..+...-.  ........++.+..++.+++.+++..++.++..
T Consensus       174 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~  253 (529)
T d1jdha_         174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHh
Confidence            211   11123456777777754 456788888888877754322  122234567888999999999999999999888


Q ss_pred             HHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh--h-hhhhhhHHHHHhhhc--CCchHHHHHHHHH
Q 015150          249 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--D-WAMQHIVPQVLEMIN--NPHYLYRMTILQA  323 (412)
Q Consensus       249 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~~--~~~~~~r~~~~~~  323 (412)
                      ++............++.+.+++.+++..++..|+.+++.+...-..  . ......++.+...+.  .++..++..++.+
T Consensus       254 ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~a  333 (529)
T d1jdha_         254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             HHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHH
Confidence            8765544334456889999999999999999999999887632111  1 112345566665553  3457788899999


Q ss_pred             HHHhccccchh------HHHHhhHHHHHhhcCCCC-chHHHHHHHHHHHHhhhhchH--HHHhhHHHHHHhhcCCCCccH
Q 015150          324 ISLLAPVMGSE------ITCSQLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDV  394 (412)
Q Consensus       324 l~~l~~~~~~~------~~~~~il~~l~~~l~d~~-~~vR~~~~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~v  394 (412)
                      +..++......      ......++.+..++.++. ..++..++.++..++..-...  ......+|.+..++.+.+.++
T Consensus       334 L~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~  413 (529)
T d1jdha_         334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT  413 (529)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHH
Confidence            99887544322      123345778888887654 457778888898886543321  233456666666654444433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2e-11  Score=109.62  Aligned_cols=378  Identities=11%  Similarity=0.039  Sum_probs=216.0

Q ss_pred             HHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCC---CC
Q 015150           28 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EP  101 (412)
Q Consensus        28 l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~  101 (412)
                      .+|.+.++++++++.++..|+..|+.++..-+.   .......+|.+.++++++++.+|..++.+|.+++.....   ..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            367888889999999999999999999865332   123344688999999999999999999999999732111   11


Q ss_pred             cccchHHHHHHhc-CCChHHHHHHHHHHHHHHHHhhCHH-H-HHHhhhhhHHHh---------------ccCCcHHHHHH
Q 015150          102 TRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPE-L-AIQHILPCVKEL---------------SSDSSQHVRSA  163 (412)
Q Consensus       102 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-~-~~~~~~~~l~~~---------------~~d~~~~vr~~  163 (412)
                      .....++.+..++ ++.++.+|..+..++..++...... . ....+.+.+..+               ....+..++..
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            1223466676655 4677899999999999998754322 1 111122222211               23457788888


Q ss_pred             HHHHHHhcCcccChhHH---HHhhHHHHHHhhcccC------hHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHH----
Q 015150          164 LATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEF------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL----  230 (412)
Q Consensus       164 ~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~------~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~----  230 (412)
                      ++.++..+.........   ...+++.+..++++..      ......+...+...........  ......+...    
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV--PTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS--CCHHHHHHHTC---
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHhhhhhh
Confidence            88888777643221111   1245566655554211      1111122222221111110000  0000111000    


Q ss_pred             ---------hcCCCchHHHH-HHHHhhHHHhhh--ChhhHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHHhCh---
Q 015150          231 ---------AEDRHWRVRLA-IIEYIPLLASQL--GVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP---  294 (412)
Q Consensus       231 ---------~~d~~~~vr~~-~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---  294 (412)
                               +.......... ....+.......  .........++.+...+. ..++.++..+...+..+......   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                     00000000000 000000000000  011122345555555543 45667788777777776532211   


Q ss_pred             ----hh-hhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccch-hHHHHhhHHHHHhhcCC------CCchHHHHHHHH
Q 015150          295 ----DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKD------RVPNIKFNVAKV  362 (412)
Q Consensus       295 ----~~-~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d------~~~~vR~~~~~~  362 (412)
                          .. .....+|.+.+.+.++++.+|..++.+++.++..... +.+....+|.++..+.+      +.++++..++.+
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHH
Confidence                11 1235789999999999999999999999999754332 23455677778877753      235699999999


Q ss_pred             HHHHhhhhchH---HHHhhHHHHHHhhcC-CCCccHHHHHHHHHHHhHH
Q 015150          363 LQSLIPIVDQS---VVEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       363 l~~l~~~~~~~---~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~~~~  407 (412)
                      +..+.....+.   ......++.|..++. +.+.+++..|..+|..++.
T Consensus       401 L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            99987543321   233456788888654 4567899999999998753

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.44  E-value=1.9e-14  Score=115.30  Aligned_cols=184  Identities=19%  Similarity=0.284  Sum_probs=120.5

Q ss_pred             HhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHH
Q 015150           72 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE  151 (412)
Q Consensus        72 ~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  151 (412)
                      ..++.||.+.+|..+++.       .        -+..+..+++|+++.||..+++.|+               .+.+..
T Consensus        48 ~~~l~~p~~e~Ra~Aa~~-------a--------~~~~L~~Ll~D~d~~VR~~AA~~Lp---------------~~~L~~   97 (233)
T d1lrva_          48 VQYLADPFWERRAIAVRY-------S--------PVEALTPLIRDSDEVVRRAVAYRLP---------------REQLSA   97 (233)
T ss_dssp             GGGTTCSSHHHHHHHHTT-------S--------CGGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGGG
T ss_pred             HHHhcCCcHHHHHHHHhc-------C--------CHHHHHHHhcCCCHHHHHHHHHHcC---------------HHHHHH
Confidence            356778888888666531       1        0234556788888888888876543               245667


Q ss_pred             hccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHh
Q 015150          152 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  231 (412)
Q Consensus       152 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~  231 (412)
                      ++.|+++.||..++..+.               .+.+..+++|+++.||..+++.+       +.        +.+..+.
T Consensus        98 L~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~-------~~--------~~L~~L~  147 (233)
T d1lrva_          98 LMFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  147 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HhcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhcc-------ch--------hHHHHHh
Confidence            778888888888776431               12345567888888888877542       11        2233466


Q ss_pred             cCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcC
Q 015150          232 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN  311 (412)
Q Consensus       232 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~  311 (412)
                      +|+++.||..++..++       .        +.+..+++|+++.||..++..++       .        +.+..+++|
T Consensus       148 ~D~d~~VR~~aA~~~~-------~--------~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D  197 (233)
T d1lrva_         148 RDEDRQVRKLVAKRLP-------E--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD  197 (233)
T ss_dssp             TCSCHHHHHHHHHHSC-------G--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHhcC-------H--------HHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhC
Confidence            7888888887765432       1        23556678888888888776542       1        345667788


Q ss_pred             CchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHH
Q 015150          312 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK  361 (412)
Q Consensus       312 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~  361 (412)
                      ++|.||.++++.+                -+.++..|.|+++.||..+++
T Consensus       198 ~d~~VR~aaae~~----------------~~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         198 PDWTVRLAAVEHA----------------SLEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SSHHHHHHHHHHS----------------CHHHHHHCCCCCHHHHHHHHC
T ss_pred             CCHHHHHHHHHhc----------------cHHHHHHhCCCCHHHHHHHHH
Confidence            8888888776432                123455677888888877764

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.39  E-value=7.4e-14  Score=111.85  Aligned_cols=183  Identities=21%  Similarity=0.238  Sum_probs=108.9

Q ss_pred             HHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH
Q 015150           33 EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR  112 (412)
Q Consensus        33 ~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  112 (412)
                      ..++.|++.++|..|++       +.+.        ..+..+++|+++.||..++..|+               .+.+..
T Consensus        48 ~~~l~~p~~e~Ra~Aa~-------~a~~--------~~L~~Ll~D~d~~VR~~AA~~Lp---------------~~~L~~   97 (233)
T d1lrva_          48 VQYLADPFWERRAIAVR-------YSPV--------EALTPLIRDSDEVVRRAVAYRLP---------------REQLSA   97 (233)
T ss_dssp             GGGTTCSSHHHHHHHHT-------TSCG--------GGGGGGTTCSSHHHHHHHHTTSC---------------SGGGGG
T ss_pred             HHHhcCCcHHHHHHHHh-------cCCH--------HHHHHHhcCCCHHHHHHHHHHcC---------------HHHHHH
Confidence            34677888888866643       2221        23556778888888888776442               134566


Q ss_pred             hcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhh
Q 015150          113 LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL  192 (412)
Q Consensus       113 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  192 (412)
                      +++|+++.||..+...+.               .+.+..++.|+++.||..++..+.               .+.+..++
T Consensus        98 L~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~~---------------~~~L~~L~  147 (233)
T d1lrva_          98 LMFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIP---------------PGRLFRFM  147 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHSC---------------GGGGGGTT
T ss_pred             HhcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhccc---------------hhHHHHHh
Confidence            777888888877765431               245556677888888877765421               02234456


Q ss_pred             cccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC
Q 015150          193 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD  272 (412)
Q Consensus       193 ~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  272 (412)
                      +|++++||..++..+       +        .+.+..+.+|+++.||..++..++       .        +.+..+++|
T Consensus       148 ~D~d~~VR~~aA~~~-------~--------~~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D  197 (233)
T d1lrva_         148 RDEDRQVRKLVAKRL-------P--------EESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD  197 (233)
T ss_dssp             TCSCHHHHHHHHHHS-------C--------GGGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHhc-------C--------HHHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhC
Confidence            677777777665432       1        123344566777777776665442       1        234455667


Q ss_pred             chhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHH
Q 015150          273 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTIL  321 (412)
Q Consensus       273 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~  321 (412)
                      +++.||.+++..++.                .++..+.|+++.||.++.
T Consensus       198 ~d~~VR~aaae~~~~----------------~ll~~L~D~d~~VR~aA~  230 (233)
T d1lrva_         198 PDWTVRLAAVEHASL----------------EALRELDEPDPEVRLAIA  230 (233)
T ss_dssp             SSHHHHHHHHHHSCH----------------HHHHHCCCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHhccH----------------HHHHHhCCCCHHHHHHHH
Confidence            777777777666652                123344566666766654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.31  E-value=1.8e-13  Score=97.66  Aligned_cols=110  Identities=17%  Similarity=0.216  Sum_probs=92.2

Q ss_pred             hcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcC
Q 015150          270 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK  349 (412)
Q Consensus       270 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~  349 (412)
                      |+|+++.||..|+.+|+.+    |+     ..++.+.+.+.|+++.+|..++.+++.+.        ....+|.+..+++
T Consensus         1 L~D~~~~VR~~A~~aL~~~----~~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM----GD-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC----SS-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh----CH-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhc
Confidence            5789999999999988753    32     34567788899999999999999998764        2356788889999


Q ss_pred             CCCchHHHHHHHHHHHHhhhhchHHHHhhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 015150          350 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  404 (412)
Q Consensus       350 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  404 (412)
                      |+++.||..++.+|+.+..        +...|.|..+++|+++.||..|..+|.+
T Consensus        64 d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             cchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence            9999999999999998854        4678889999999999999999998864

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=2.1e-08  Score=98.72  Aligned_cols=402  Identities=12%  Similarity=0.126  Sum_probs=222.4

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCC-chHHHHHHHHhHHHHhhc-cC--------chhhhhhhHHH
Q 015150            1 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKL-LE--------PQDCVAHILPV   70 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~i~~~-~~--------~~~~~~~l~~~   70 (412)
                      +|.+|+.|-+.|..+-+.   +.+...++.+   +.+++ +..+|..|+-.+.+.... +.        +++.+..+...
T Consensus        16 ~~~~~k~Ae~~L~~~~~~---p~f~~~L~~i---~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~   89 (959)
T d1wa5c_          16 IASTAKTSERNLRQLETQ---DGFGLTLLHV---IASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKE   89 (959)
T ss_dssp             SGGGHHHHHHHHHHHHTS---TTHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHcC---CCHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHH
Confidence            478899999988876432   2344444444   23333 456999998888766653 32        23345556666


Q ss_pred             HHhhccCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCH-----H------
Q 015150           71 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-----E------  139 (412)
Q Consensus        71 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~------  139 (412)
                      +.+.+.+++..+|...+.+++.++..-.++ .|++++|.+.+.++++++..+..++.++..+.+....     +      
T Consensus        90 ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~-~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~  168 (959)
T d1wa5c_          90 IVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIK  168 (959)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhCcc-ccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHH
Confidence            666666778899999999999999876553 4889999999999998888999999999888765321     1      


Q ss_pred             HHHHhhhhhHHHhc--------cCCc------------------------------------------------------
Q 015150          140 LAIQHILPCVKELS--------SDSS------------------------------------------------------  157 (412)
Q Consensus       140 ~~~~~~~~~l~~~~--------~d~~------------------------------------------------------  157 (412)
                      .+...+.+.+..++        +...                                                      
T Consensus       169 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  248 (959)
T d1wa5c_         169 LVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLE  248 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhccccccc
Confidence            11111112111111        0000                                                      


Q ss_pred             -----------HHHHHHHHHHHHhcCcccChh--HHHHhhHHHHHHhhc-----ccChHHHHHHHHHHHHHHHhhchh--
Q 015150          158 -----------QHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID--  217 (412)
Q Consensus       158 -----------~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~-----d~~~~vr~~~~~~l~~i~~~~~~~--  217 (412)
                                 ..++..++..+..+....+..  ...+.+++.+.+.+.     .....+...++..+..+.......  
T Consensus       249 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  328 (959)
T d1wa5c_         249 DPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEI  328 (959)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGG
T ss_pred             CchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHH
Confidence                       012222222222222111110  001122222222221     123445555555555444321110  


Q ss_pred             ----hHHhhHH-HHHHHH-----------------------hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHH
Q 015150          218 ----LLSQSLL-PAIVEL-----------------------AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  269 (412)
Q Consensus       218 ----~~~~~~~-~~l~~~-----------------------~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  269 (412)
                          .....++ +.+...                       -.+..+..|.++...+..++...+.. ..+.+.+.+...
T Consensus       329 ~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~-~~~~~~~~i~~~  407 (959)
T d1wa5c_         329 FNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-VTNIFLAHMKGF  407 (959)
T ss_dssp             GCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence                0111111 111111                       11223456778888888887766543 223344444433


Q ss_pred             h----c--CchhHHHHHHHHHHHHHHHHhChh-----------hhhhhhHHHHHhhh---cCCchHHHHHHHHHHHHhcc
Q 015150          270 L----K--DKVYSIRDAAANNVKRLAEEFGPD-----------WAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAP  329 (412)
Q Consensus       270 l----~--d~~~~vr~~a~~~l~~l~~~~~~~-----------~~~~~~l~~l~~~~---~~~~~~~r~~~~~~l~~l~~  329 (412)
                      +    .  +.++..|.++...++.+....+..           .+.+.+.+.+...+   .++...+|..++..++.++.
T Consensus       408 ~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~  487 (959)
T d1wa5c_         408 VDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRN  487 (959)
T ss_dssp             HHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGG
T ss_pred             HHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHh
Confidence            3    2  456778999988888776422110           01122222222222   34557799999999999998


Q ss_pred             ccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhch----------H---HHHhhHHHHHHhhcCCCCccH--
Q 015150          330 VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----------S---VVEKSIRPCLVELSEDPDVDV--  394 (412)
Q Consensus       330 ~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~----------~---~~~~~i~~~l~~l~~d~~~~v--  394 (412)
                      ....+ ....+++.+++.+.|+++.||..++.++..+......          +   .+.+.++..+...+.+.....  
T Consensus       488 ~~~~~-~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~  566 (959)
T d1wa5c_         488 QLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK  566 (959)
T ss_dssp             GSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH
T ss_pred             hccHH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhh
Confidence            77665 5678999999999999999999999999999764321          1   122334444444333333332  


Q ss_pred             ---HHHHHHHHHHhHHhhhC
Q 015150          395 ---RFFATQALQSKDQVMMS  411 (412)
Q Consensus       395 ---r~~a~~al~~~~~~~~~  411 (412)
                         ...+..++..+....++
T Consensus       567 ~~~~~~ll~~l~~ii~~~~~  586 (959)
T d1wa5c_         567 LAENEFLMRSIFRVLQTSED  586 (959)
T ss_dssp             HTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence               23477777777666553

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.17  E-value=1.2e-12  Score=93.25  Aligned_cols=84  Identities=19%  Similarity=0.146  Sum_probs=36.9

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcccChhHHHHhhHHH
Q 015150          108 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI  187 (412)
Q Consensus       108 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  187 (412)
                      +.+.+.++|+++.||..++.+|+.+..        ...+|.+..+++|+++.||..++.+++.+..        ....|.
T Consensus        25 ~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--------~~~~~~   88 (111)
T d1te4a_          25 EPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAA   88 (111)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc--------cchHHH
Confidence            334444445555555555444443221        1123444444444455555555554444321        133344


Q ss_pred             HHHhhcccChHHHHHHHHHH
Q 015150          188 FLSLLKDEFPDVRLNIISKL  207 (412)
Q Consensus       188 l~~~l~d~~~~vr~~~~~~l  207 (412)
                      +..+++|+++.||..++.+|
T Consensus        89 L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          89 MEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHTTSCCTHHHHHHHHHG
T ss_pred             HHHHHcCCCHHHHHHHHHHH
Confidence            44444444455554444443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.8e-09  Score=95.19  Aligned_cols=364  Identities=9%  Similarity=0.021  Sum_probs=198.7

Q ss_pred             CchhHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCc---hhhhhhhHHHHHhh
Q 015150            1 MPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNF   74 (412)
Q Consensus         1 ~~~vR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l   74 (412)
                      +|.||..++.+|+.++..-+.   .......+|.+.++++++++.+|..|+.+|..++...++   .......++.+.++
T Consensus        15 ~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~   94 (457)
T d1xm9a1          15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL   94 (457)
T ss_dssp             CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHH
Confidence            488999999999999853221   223344678888999999999999999999999854332   11122245556554


Q ss_pred             c-cCCChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHh----------------cCCChHHHHHHHHHHHHHHHHhh
Q 015150           75 S-QDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRL----------------LRDNEAEVRIAAAGKVTKICRIL  136 (412)
Q Consensus        75 ~-~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~----------------l~d~~~~vr~~a~~~l~~l~~~~  136 (412)
                      + ++.++.+|..++.++..++....... ....-++.+...                ....+..++..++.++..++...
T Consensus        95 l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~  174 (457)
T d1xm9a1          95 LRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD  174 (457)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSH
T ss_pred             HhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCc
Confidence            4 56788999999999999886422111 011112222221                13346788888888887765432


Q ss_pred             CHHHH---HHhhhhhHHHhccCC------cHHHHHHHHHHHHhcCcccChhHHHHhhHHHHHHhhcccChHHHHHHHHHH
Q 015150          137 NPELA---IQHILPCVKELSSDS------SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL  207 (412)
Q Consensus       137 ~~~~~---~~~~~~~l~~~~~d~------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l  207 (412)
                      .....   ...+++.+..++++.      ...........+..........  .......+.....+  ..........+
T Consensus       175 ~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~  250 (457)
T d1xm9a1         175 AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE--VPTRYRQLEYNARN--AYTEKSSTGCF  250 (457)
T ss_dssp             HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH--SCCHHHHHHHTC---------------
T ss_pred             hHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHhhhhh--hhhHHHhhhhh
Confidence            22111   112344444443211      1111111222222111110000  00000000000000  00000000001


Q ss_pred             HHH------------HHhh------chhhHHhhHHHHHHHHhc-CCCchHHHHHHHHhhHHHhhhChhh--------HHH
Q 015150          208 DQV------------NQVI------GIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGF--------FDD  260 (412)
Q Consensus       208 ~~i------------~~~~------~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~--------~~~  260 (412)
                      ...            ....      .........++.+..+.. ..++.++......+..+........        ...
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  330 (457)
T d1xm9a1         251 SNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKE  330 (457)
T ss_dssp             ---------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTS
T ss_pred             hhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHc
Confidence            000            0000      001112344565655544 4456677777766666654322110        112


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhCh-hhhhhhhHHHHHhhhcC------CchHHHHHHHHHHHHhccccch
Q 015150          261 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-DWAMQHIVPQVLEMINN------PHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       261 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~~~~------~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      ..+|.+.++++++++.++..++.+++.+...... +.+.+..++.+...+.+      ++..++..++.++..++...+.
T Consensus       331 ~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~  410 (457)
T d1xm9a1         331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ  410 (457)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH
T ss_pred             CChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHH
Confidence            3578889999999999999999999998754322 22334566777766643      3467999999999998754432


Q ss_pred             h---HHHHhhHHHHHhhcCC-CCchHHHHHHHHHHHHhh
Q 015150          334 E---ITCSQLLPVVINASKD-RVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       334 ~---~~~~~il~~l~~~l~d-~~~~vR~~~~~~l~~l~~  368 (412)
                      .   ......++.+.+++.+ .++.++.+|+.+|..++.
T Consensus       411 ~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         411 LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            2   2333577888888765 467899999999998864

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.1e-06  Score=86.30  Aligned_cols=405  Identities=10%  Similarity=0.078  Sum_probs=224.8

Q ss_pred             hhHHHHHHHHHHHHHHh-h--------hhhhHHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHh
Q 015150            3 MVRRSAATNLGKFAATV-E--------AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN   73 (412)
Q Consensus         3 ~vR~~a~~~l~~~~~~~-~--------~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~   73 (412)
                      .+|..|+-.|.+..+.. .        ++.....+-..+...+.+++..+|...+.+++.+++.-.++ .++.+++.+.+
T Consensus        52 ~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~-~Wp~ll~~l~~  130 (959)
T d1wa5c_          52 STRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSDLAS  130 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc-ccHHHHHHHHH
Confidence            58999999998887752 1        12233444444444455667789999999999999864443 57899999999


Q ss_pred             hccCCChHHHHHHHHHHHHHHHHhCCCCcc-----------cchHHHHHHhc-------CC-Ch----------------
Q 015150           74 FSQDKSWRVRYMVANQLYELCEAVGPEPTR-----------SDVVPAYVRLL-------RD-NE----------------  118 (412)
Q Consensus        74 l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~-----------~~l~~~l~~~l-------~d-~~----------------  118 (412)
                      .++++++..+..++.++..+++........           ..+.+.+..++       .. ..                
T Consensus       131 ~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (959)
T d1wa5c_         131 RLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLI  210 (959)
T ss_dssp             TCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence            999988888999999998888655322111           11112111111       10 00                


Q ss_pred             -------------------------------------------------HHHHHHHHHHHHHHHHhhCHH--HHHHhhhh
Q 015150          119 -------------------------------------------------AEVRIAAAGKVTKICRILNPE--LAIQHILP  147 (412)
Q Consensus       119 -------------------------------------------------~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~  147 (412)
                                                                       ..+|...+..+..+.+..+..  .+.+.+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~  290 (959)
T d1wa5c_         211 KLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQ  290 (959)
T ss_dssp             HHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                                                             012222233333222222111  11122222


Q ss_pred             hHHHhc-----cCCcHHHHHHHHHHHHhcCccc------ChhHHHHhhH-HHHHHhhc-----------c----------
Q 015150          148 CVKELS-----SDSSQHVRSALATVIMGMAPIL------GKDATIEQLL-PIFLSLLK-----------D----------  194 (412)
Q Consensus       148 ~l~~~~-----~d~~~~vr~~~~~~l~~l~~~~------~~~~~~~~l~-~~l~~~l~-----------d----------  194 (412)
                      .+.+.+     ......+...++..+..+....      ........++ +.+...+.           |          
T Consensus       291 ~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~  370 (959)
T d1wa5c_         291 ITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE  370 (959)
T ss_dssp             HHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhh
Confidence            222221     2234455555555555544321      1111111111 11111110           0          


Q ss_pred             --cChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHh------cCCCchHHHHHHHHhhHHHhhhCh-----------
Q 015150          195 --EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA------EDRHWRVRLAIIEYIPLLASQLGV-----------  255 (412)
Q Consensus       195 --~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~------~d~~~~vr~~~~~~l~~l~~~~~~-----------  255 (412)
                        .....|..+...+..++...+... .+.+.+.+...+      .+.+|+.|.+++..++.+....+.           
T Consensus       371 ~~~~~~~r~~a~~ll~~l~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~  449 (959)
T d1wa5c_         371 GSDTDTRRRACTDFLKELKEKNEVLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNL  449 (959)
T ss_dssp             C----CHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTT
T ss_pred             hcccccHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccch
Confidence              112356666667777766554332 234444444333      246899999999888887643211           


Q ss_pred             hhHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc
Q 015150          256 GFFDDKLGALCMQWL---KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG  332 (412)
Q Consensus       256 ~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~  332 (412)
                      ..+.+.+.+.+...+   .++...+|..++..++.+.....++. ...+++.+...+.+++..+|..++.++..+.....
T Consensus       450 ~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~-~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~  528 (959)
T d1wa5c_         450 LNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (959)
T ss_dssp             CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             hhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhc
Confidence            112333444333333   44567799999999999887766553 46789999999999999999999999999976433


Q ss_pred             h----------h---HHHHhhHHHHHhhcCCCCchHH-----HHHHHHHHHHhhhhchH--HHHhhH----HHHHHhhcC
Q 015150          333 S----------E---ITCSQLLPVVINASKDRVPNIK-----FNVAKVLQSLIPIVDQS--VVEKSI----RPCLVELSE  388 (412)
Q Consensus       333 ~----------~---~~~~~il~~l~~~l~d~~~~vR-----~~~~~~l~~l~~~~~~~--~~~~~i----~~~l~~l~~  388 (412)
                      .          +   ++.+.++..++..+.+......     ..+..++..+...++..  .+...+    .+.+....+
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~  608 (959)
T d1wa5c_         529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK  608 (959)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT
T ss_pred             ccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1          1   3455566666666655443322     34777777777666543  222333    333444444


Q ss_pred             C-CCccHHHHHHHHHHHhHHhhh
Q 015150          389 D-PDVDVRFFATQALQSKDQVMM  410 (412)
Q Consensus       389 d-~~~~vr~~a~~al~~~~~~~~  410 (412)
                      + .+......+.++++.+....|
T Consensus       609 ~~~~~~~~~~~~e~l~~l~~~~~  631 (959)
T d1wa5c_         609 NPSNPRFTHYTFESIGAILNYTQ  631 (959)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTSC
T ss_pred             CccchHHHHHHHHHHHHHHHhcC
Confidence            4 334566667777777665443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7.4e-09  Score=85.67  Aligned_cols=139  Identities=18%  Similarity=0.153  Sum_probs=70.6

Q ss_pred             HHhcCchhHHHHHHHHHHHHHHHHhCh---hhhhhhhHHHHHhhhc-CCchHHHHHHHHHHHHhccccchh---HHHHhh
Q 015150          268 QWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE---ITCSQL  340 (412)
Q Consensus       268 ~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~i  340 (412)
                      .+++++++++|..|+..++.+......   .......+|.+..++. +++..+|..++.+++.++......   ......
T Consensus        66 ~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~g  145 (264)
T d1xqra1          66 RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG  145 (264)
T ss_dssp             TTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhh
Confidence            345555556666666666655542211   1112345555555553 344555666666666555433221   223344


Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHhhhhch---HHHHhhHHHHHHhhcCCCCccHHHHHHHHHHHhH
Q 015150          341 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  406 (412)
Q Consensus       341 l~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  406 (412)
                      ++.+.+.+.++++.++..++.++..+...-..   .......+|.|..+++++++++|..+..++..+.
T Consensus       146 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~  214 (264)
T d1xqra1         146 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV  214 (264)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            55555666666666666666666655433221   1222345556666556666666666666665554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=4e-08  Score=81.14  Aligned_cols=175  Identities=10%  Similarity=0.075  Sum_probs=124.4

Q ss_pred             ChHHHHHHHHHHHHHHHHhhCHHH--HHHhhhh-hHHHhccCCcHHHHHHHHHHHHhcCcccCh---hHHHHhhHHHHHH
Q 015150          117 NEAEVRIAAAGKVTKICRILNPEL--AIQHILP-CVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLS  190 (412)
Q Consensus       117 ~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~-~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~  190 (412)
                      .+.+.|..|+..|..+++..+...  .....++ .+..+++++++.+|..++.+++.++..-..   .......+|.+.+
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            346777888888877776433221  1112234 444577888899999999999988864321   1223467888888


Q ss_pred             hhc-ccChHHHHHHHHHHHHHHHhhchh---hHHhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhCh---hhHHHHHH
Q 015150          191 LLK-DEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLG  263 (412)
Q Consensus       191 ~l~-d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~  263 (412)
                      ++. +.++.+|..++.++..++......   ......++.+.+++.+.+..++..++..+..++...+.   .......+
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            885 567889999999999987654321   22345678888999999999999999998888765322   11233468


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 015150          264 ALCMQWLKDKVYSIRDAAANNVKRLAEE  291 (412)
Q Consensus       264 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~  291 (412)
                      |.+..+++++++.+|..|+.+|+.+...
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            8899999999999999999999988753

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.27  E-value=7.3e-05  Score=62.81  Aligned_cols=228  Identities=10%  Similarity=0.021  Sum_probs=127.2

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHHHHHHHHhh-CHHHHHHhhhhhHHHhccCCc
Q 015150           79 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPELAIQHILPCVKELSSDSS  157 (412)
Q Consensus        79 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~~~~d~~  157 (412)
                      .+..|....++++..+.        ..-+..+.+++.+..-..- .+...+..++... +.....+.+.+.+..--...+
T Consensus        70 ~~~~r~~~lDal~~~GT--------~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~  140 (336)
T d1lsha1          70 QKDYRRWILDAVPAMAT--------SEALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRESLSYARELLNTSFIRNR  140 (336)
T ss_dssp             SHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTC
T ss_pred             ChhHHHHHHHHHHHhCC--------HHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccc
Confidence            35567777777766553        3345556665544332222 2333444443332 223333333333322222257


Q ss_pred             HHHHHHHHHHHHhcCcccC------hhHHHHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchhhHHhhHHHHHHHHh
Q 015150          158 QHVRSALATVIMGMAPILG------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  231 (412)
Q Consensus       158 ~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~~~~~l~~~~  231 (412)
                      +.+|..+.-++|.++...-      .+...+.+...+.+..+..+.+.+..++++|+.++.        +..++.+..++
T Consensus       141 ~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~i~~l~~~l  212 (336)
T d1lsha1         141 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQRFL  212 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHTTS
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------HhHHHHHHHHh
Confidence            8899999988888765421      112223444555555555666666677778877752        23455555555


Q ss_pred             cC-------CCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHH
Q 015150          232 ED-------RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ  304 (412)
Q Consensus       232 ~d-------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~  304 (412)
                      .+       ....+|.+++.++..+.... +....+.+++++.+  .+.+.++|.+|+..+-..    .+.   ...+..
T Consensus       213 ~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t----~P~---~~~l~~  282 (336)
T d1lsha1         213 PGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFES----KPS---VALVSM  282 (336)
T ss_dssp             TTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHT----CCC---HHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhc----CCC---HHHHHH
Confidence            43       24578999999998876543 33344455555554  345678998887776431    111   223344


Q ss_pred             HHhhh-cCCchHHHHHHHHHHHHhccccch
Q 015150          305 VLEMI-NNPHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       305 l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      +...+ .+++.+|+......+..++..-.+
T Consensus       283 i~~~l~~E~~~QV~sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         283 VAVRLRREPNLQVASFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence            44333 567788888888888887765443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.18  E-value=0.00011  Score=61.64  Aligned_cols=121  Identities=10%  Similarity=-0.015  Sum_probs=69.4

Q ss_pred             CchHHHHHHHHhhHHHhhhC------hhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhhhhhHHHHHhh
Q 015150          235 HWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM  308 (412)
Q Consensus       235 ~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~  308 (412)
                      ++.+|..+.-.++.++...-      ...+.+.+...+.+..+..+.+-+..++++||.+..        ...++.+..+
T Consensus       140 ~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~i~~l~~~  211 (336)
T d1lsha1         140 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQRF  211 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHTT
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------HhHHHHHHHH
Confidence            45566666656655554321      122233445555555555566666667777775431        2344555555


Q ss_pred             hcC-------CchHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHH
Q 015150          309 INN-------PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  366 (412)
Q Consensus       309 ~~~-------~~~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l  366 (412)
                      +.+       ....+|.++++++..+....+ ....+.+++.+.+  .+..+++|.+|+..+-..
T Consensus       212 l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p-~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t  273 (336)
T d1lsha1         212 LPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-RKVQEIVLPIFLN--VAIKSELRIRSCIVFFES  273 (336)
T ss_dssp             STTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-HHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHT
T ss_pred             hcccccccccccHHHHHHHHHHHHHhhhcCc-HHHHHHHHHHHcC--CCCChHHHHHHHHHHHhc
Confidence            533       246788888888888765432 2344555555554  345678888888777554

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.21  Score=39.93  Aligned_cols=208  Identities=11%  Similarity=0.111  Sum_probs=128.0

Q ss_pred             HHhhHHHHHHhhcccChHHHHHHHHHHHHHHHhhchh------hH--HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhh
Q 015150          181 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  252 (412)
Q Consensus       181 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~i~~~~~~~------~~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  252 (412)
                      ...++..+...+..=+.+.|+.+...++.+.+.-...      -+  .+.++..+....++++...-.+  ..+...++.
T Consensus        67 ~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G--~mLREcik~  144 (330)
T d1upka_          67 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCG--IMLRECIRH  144 (330)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHH--HHHHHHHTS
T ss_pred             HhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhh--HHHHHHHhh
Confidence            3466666666666667788888777777765432110      00  2345666666666655433222  112221111


Q ss_pred             h--ChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC---hhhh---hhhhHHHHHhhhcCCchHHHHHHHHHH
Q 015150          253 L--GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMTILQAI  324 (412)
Q Consensus       253 ~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~~l~~l~~~~~~~~~~~r~~~~~~l  324 (412)
                      -  ..-.+...-+--+.++..-++-+|-..|+.++..+.....   .+++   .+.++..+..++.++++.+|..++..+
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLL  224 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  224 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            0  0001111112234567888999999999999988875431   2222   245666777888999999999999999


Q ss_pred             HHhccccchhHH------HHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhhhc--hHH------HHhhHHHHHHhhcCCC
Q 015150          325 SLLAPVMGSEIT------CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSV------VEKSIRPCLVELSEDP  390 (412)
Q Consensus       325 ~~l~~~~~~~~~------~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~--~~~------~~~~i~~~l~~l~~d~  390 (412)
                      +.+..--....+      ...-+..+..+++|++.+++..|..++..+...=.  ++.      -.+.++..+....+|.
T Consensus       225 gelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~  304 (330)
T d1upka_         225 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  304 (330)
T ss_dssp             HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCC
Confidence            998632222211      23567788899999999999999988887754321  221      1357788888877775

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.91  E-value=0.2  Score=38.13  Aligned_cols=136  Identities=7%  Similarity=-0.004  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHhHHHHhhccCchhhhhhhHHHHHhhccC-CChHHHHHHHHHHHHHHHHhCCCCcc
Q 015150           25 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTR  103 (412)
Q Consensus        25 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~~~~  103 (412)
                      .+.+..++..+.+++.-+.|..|+..+.........     ..++.+..++.+ .+|.+--..+..++.....     ..
T Consensus        48 ~~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~-----~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~-----~~  117 (213)
T d2b6ca1          48 KEKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HL  117 (213)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SG
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHccCccHHHHHHHHHHHHHHHHH-----hh
Confidence            345666777778888888899888888777665433     335666666554 4576666555544332221     12


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCHHHHHHhhhhhHHHhccCCcHHHHHHHHHHHHhcCcc
Q 015150          104 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  174 (412)
Q Consensus       104 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~  174 (412)
                      +...+.+.....|++.-+|..|+.....+.+....    ..++..+..+..|++..||.++.+.|..++..
T Consensus       118 ~~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~~----~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         118 TELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQ----DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             GGHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcccH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            45667888889999988888887766544333332    23566777788899999999999999888754

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.9  Score=36.23  Aligned_cols=186  Identities=8%  Similarity=0.027  Sum_probs=120.3

Q ss_pred             HhhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhh-Chh-----hH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 015150          220 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-----FF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  291 (412)
Q Consensus       220 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~-----~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  291 (412)
                      ..+++..+...+..-++..|..+...+..+.+.- |..     .+  .+.++..++....+++..  ..+-.-|.++++.
T Consensus        67 ~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiA--l~~G~mLREcik~  144 (330)
T d1upka_          67 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIA--LNCGIMLRECIRH  144 (330)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTH--HHHHHHHHHHHTS
T ss_pred             HhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchh--hhhhHHHHHHHhh
Confidence            3556777777778888889998888888776543 211     01  134666666666554433  2222223333321


Q ss_pred             hC--hhhhhhhhHHHHHhhhcCCchHHHHHHHHHHHHhccccc---hhH---HHHhhHHHHHhhcCCCCchHHHHHHHHH
Q 015150          292 FG--PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEI---TCSQLLPVVINASKDRVPNIKFNVAKVL  363 (412)
Q Consensus       292 ~~--~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~---~~~~il~~l~~~l~d~~~~vR~~~~~~l  363 (412)
                      -.  .-.+...-+..+.++...++..+-.-|...+..+.....   .++   -++.+...+-+++.++++-+|..+++.|
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLL  224 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  224 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            10  011123345566677888888888888888877754332   222   2455777777889999999999999999


Q ss_pred             HHHhhhhchHHH------HhhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          364 QSLIPIVDQSVV------EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       364 ~~l~~~~~~~~~------~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      +.+...-....+      ...-+..+..+++|...+++..|-+.+..++.
T Consensus       225 gelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         225 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence            999754333211      14557778888999999999999999887765

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.75  Score=32.24  Aligned_cols=96  Identities=7%  Similarity=0.019  Sum_probs=62.0

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  306 (412)
                      +.+++|..-..++..+..     .+. -....+..+.+-+++.++.+...|+..+..++++.|..+.    ...++..+.
T Consensus        21 l~~~dw~~ileicD~I~~-----~~~-~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~   94 (145)
T d1ujka_          21 NKELDWASINGFCEQLNE-----DFE-GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELI   94 (145)
T ss_dssp             CSSCCHHHHHHHHHHHTS-----STT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhC-----CCc-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHH
Confidence            345677655555554431     111 1233555566778888888888899988888888887654    345666676


Q ss_pred             hhhcC------CchHHHHHHHHHHHHhccccc
Q 015150          307 EMINN------PHYLYRMTILQAISLLAPVMG  332 (412)
Q Consensus       307 ~~~~~------~~~~~r~~~~~~l~~l~~~~~  332 (412)
                      +.+..      .+..|+...+..+......++
T Consensus        95 kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          95 KVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            66653      345788888888877766554

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.00  E-value=0.28  Score=34.55  Aligned_cols=97  Identities=12%  Similarity=0.088  Sum_probs=62.1

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  306 (412)
                      ..++||..-..++..+..  ...|+    ...+..+.+.++++++.+...|+..+..++++.|..+.    ...++..+.
T Consensus        18 ~~~~dw~~il~icD~I~~--~~~~~----k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~   91 (145)
T d1dvpa1          18 RLEPDWPSILLICDEINQ--KDVTP----KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFS   91 (145)
T ss_dssp             CSSCCHHHHHHHHHHHHT--TSSCH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhC--CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHH
Confidence            456777766666655531  11122    23555667778889999999999999999998877543    234555555


Q ss_pred             hhhcC-CchHHHHHHHHHHHHhccccch
Q 015150          307 EMINN-PHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       307 ~~~~~-~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      .++.. ++..+|..+++.+...+..++.
T Consensus        92 ~l~~~~~~~~Vk~kil~li~~W~~~f~~  119 (145)
T d1dvpa1          92 SFLESTPHENVRQKMLELVQTWAYAFRS  119 (145)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            54433 3456777777777776665544

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.69  E-value=1.4  Score=33.11  Aligned_cols=134  Identities=8%  Similarity=0.013  Sum_probs=85.2

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHHhChhhhhh
Q 015150          221 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQ  299 (412)
Q Consensus       221 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~  299 (412)
                      +.+...+..+..++.-..|..++..+.......     .+..++.+..++.+ ++|++....+..++......     .+
T Consensus        49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~-----~~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~-----~~  118 (213)
T d2b6ca1          49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LT  118 (213)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GG
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHh-----hh
Confidence            555666677777777778888877765554432     23466777777765 45667776655554433221     23


Q ss_pred             hhHHHHHhhhcCCc-hHHHHHHHHHHHHhccccchhHHHHhhHHHHHhhcCCCCchHHHHHHHHHHHHhhh
Q 015150          300 HIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  369 (412)
Q Consensus       300 ~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~vR~~~~~~l~~l~~~  369 (412)
                      ...+.+....++.+ |..|.+.+..+..     ..+...+.++..+...+.|+..-||+++.++|..++..
T Consensus       119 ~~~~~l~~w~~s~~~w~rR~aiv~~l~~-----~~~~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         119 ELPTIFALFYGAENFWNRRVALNLQLML-----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             GHHHHHHHHTTCSSHHHHHHHHHTTTTC-----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHH-----HHcccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            45577777888777 5555544433221     11112345677778888999999999999999999864

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=1.2  Score=31.48  Aligned_cols=97  Identities=5%  Similarity=0.048  Sum_probs=64.8

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhh----hhhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  306 (412)
                      +.++||..-..++..+..     ... -....+..+.+-++..++.+...|+..+..+++++|..+.    ...++..+.
T Consensus        15 l~~~dw~~ileicD~In~-----~~~-~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~   88 (151)
T d1juqa_          15 NRQEDWEYIIGFCDQINK-----ELE-GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI   88 (151)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----STT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhc-----CCc-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHH
Confidence            355778766666655542     111 1233555667778888888999999999999998887654    345666777


Q ss_pred             hhhcC------CchHHHHHHHHHHHHhccccch
Q 015150          307 EMINN------PHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       307 ~~~~~------~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      +++..      .+..|+...+..+...+..++.
T Consensus        89 kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~~  121 (151)
T d1juqa_          89 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE  121 (151)
T ss_dssp             HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHcccCCCCcccHHHHHHHHHHHHHHHHHccc
Confidence            66653      2456888888888877766543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.88  E-value=1.3  Score=30.89  Aligned_cols=72  Identities=11%  Similarity=0.064  Sum_probs=32.0

Q ss_pred             hhHHHHHhhccCCChHHHHHHHHHHHHHHHHhC----CCCcccchHHHHHHhcC-CChHHHHHHHHHHHHHHHHhhC
Q 015150           66 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG----PEPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILN  137 (412)
Q Consensus        66 ~l~~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~  137 (412)
                      .....+.+.++++++.+...++..|..++..+|    .+....+++..+..+++ .+...||..++..+..++..+.
T Consensus        42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            344444444455555555555555555544433    11222233333333332 2244555555555555555443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=1.8  Score=30.05  Aligned_cols=97  Identities=5%  Similarity=0.019  Sum_probs=64.0

Q ss_pred             hcCCCchHHHHHHHHhhHHHhhhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhhh----hhhHHHHH
Q 015150          231 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM----QHIVPQVL  306 (412)
Q Consensus       231 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~~l~~l~  306 (412)
                      ..+++|..-..++..+..     ++. -....+..+.+-++++++.+...|+..+..++++.|..+..    ..++..+.
T Consensus        14 ~~~~dw~~il~icD~I~~-----~~~-~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~   87 (143)
T d1mhqa_          14 MSEQDWSAIQNFCEQVNT-----DPN-GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI   87 (143)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----SSH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc-----CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            345677665555555431     111 12235555677788889999999999999999998876542    45666777


Q ss_pred             hhhcC------CchHHHHHHHHHHHHhccccch
Q 015150          307 EMINN------PHYLYRMTILQAISLLAPVMGS  333 (412)
Q Consensus       307 ~~~~~------~~~~~r~~~~~~l~~l~~~~~~  333 (412)
                      +++..      .+..||..++..+...+..++.
T Consensus        88 ~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~  120 (143)
T d1mhqa_          88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE  120 (143)
T ss_dssp             HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            66653      3466888888888777766554

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=2.2  Score=29.67  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHH----HHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~  368 (412)
                      ...+-.+.+.++++++.+...++..+..+...+|..+.    ...++..+.+++.+      ..+.||..++..+..++.
T Consensus        37 k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            44666777778889999999999999999999987642    44677777777754      357799999999999998


Q ss_pred             hhchHHHHhhHHHHHH
Q 015150          369 IVDQSVVEKSIRPCLV  384 (412)
Q Consensus       369 ~~~~~~~~~~i~~~l~  384 (412)
                      .+..+.-...+...|+
T Consensus       117 ~f~~~~~~~~~y~~Lk  132 (143)
T d1mhqa_         117 WFPEDIKIRDAYQMLK  132 (143)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             HcCCCchHHHHHHHHH
Confidence            8765432233344443

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.84  E-value=2.2  Score=29.71  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=57.5

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhH----HHHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~  368 (412)
                      ...+..+.+.+.+++..+...++..+..+...+|..+    ....++..+.+.+.+      ....||..++..+..++.
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            4566677777888888888899999999999998764    244577777777654      456899999999999988


Q ss_pred             hhch
Q 015150          369 IVDQ  372 (412)
Q Consensus       369 ~~~~  372 (412)
                      .+..
T Consensus       124 ~fp~  127 (145)
T d1ujka_         124 GLPE  127 (145)
T ss_dssp             HCTT
T ss_pred             HCCC
Confidence            7744

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=2.8  Score=29.33  Aligned_cols=87  Identities=16%  Similarity=0.117  Sum_probs=62.4

Q ss_pred             hhhHHHHHhhhcCCchHHHHHHHHHHHHhccccchhHH----HHhhHHHHHhhcCC------CCchHHHHHHHHHHHHhh
Q 015150          299 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP  368 (412)
Q Consensus       299 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~vR~~~~~~l~~l~~  368 (412)
                      ...+-.+.+.+++++..+...++..+..+...+|..+.    ...++..+.+++.+      ..+.||..++..+..++.
T Consensus        38 k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~  117 (151)
T d1juqa_          38 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  117 (151)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHH
Confidence            45666777778888888888899999999988887642    33566777776654      256799999999999998


Q ss_pred             hhchHHHHhhHHHHHHh
Q 015150          369 IVDQSVVEKSIRPCLVE  385 (412)
Q Consensus       369 ~~~~~~~~~~i~~~l~~  385 (412)
                      .+........+...|..
T Consensus       118 ~f~~~~~~~~~Y~~Lk~  134 (151)
T d1juqa_         118 ALPEEAKIKDAYHMLKR  134 (151)
T ss_dssp             HCTTCHHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHH
Confidence            87644333344444443

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.64  E-value=12  Score=31.66  Aligned_cols=56  Identities=18%  Similarity=0.180  Sum_probs=40.3

Q ss_pred             CchHHHHHHHHHHHHhhhhchH--HHH-hhHHHHHHhhcCCCCccHHHHHHHHHHHhHH
Q 015150          352 VPNIKFNVAKVLQSLIPIVDQS--VVE-KSIRPCLVELSEDPDVDVRFFATQALQSKDQ  407 (412)
Q Consensus       352 ~~~vR~~~~~~l~~l~~~~~~~--~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  407 (412)
                      ++.+-..|+.=+|+++..++..  ... -..-..+.++++++|++||..|..|++.+..
T Consensus       415 D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         415 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             CcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4455566777778887776543  111 1356677888899999999999999998764

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.79  E-value=12  Score=29.84  Aligned_cols=135  Identities=13%  Similarity=0.204  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhcCcccCh-hHHHHhhHHHHHH-hhcc---cChHHHH-HHHHHHHHHHHhhchhh------HHhhHHHH
Q 015150          159 HVRSALATVIMGMAPILGK-DATIEQLLPIFLS-LLKD---EFPDVRL-NIISKLDQVNQVIGIDL------LSQSLLPA  226 (412)
Q Consensus       159 ~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~-~l~d---~~~~vr~-~~~~~l~~i~~~~~~~~------~~~~~~~~  226 (412)
                      .+++...+.+......... +...+.++|.+.+ .+.|   ..|+.|. .+++.+..+...++...      +.+.++..
T Consensus        44 ~iKkeiLkLi~t~i~~~~d~~~v~~~~i~pl~~~vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~  123 (321)
T d1w9ca_          44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC  123 (321)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3444555555544443322 2233445544443 3333   3466663 45556666666555321      11222222


Q ss_pred             HHHHhcC---CCchHHHHHHHHhhHHHhhhChhhHH------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhC
Q 015150          227 IVELAED---RHWRVRLAIIEYIPLLASQLGVGFFD------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG  293 (412)
Q Consensus       227 l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  293 (412)
                      ...+.++   +.|..|....+.+..+....-...+.      ..++..+...+++++.+|...++..+..++....
T Consensus       124 Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~  199 (321)
T d1w9ca_         124 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA  199 (321)
T ss_dssp             HHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHh
Confidence            2333443   35667777766666666665554443      2234444445566666676666666666665553