Citrus Sinensis ID: 015178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENPNFCPVWIQA
Secondary Structure (PSIPRED)
cccEEccccccccccccccEEEEccccHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccEEEEEEEHHHEEHHcccccccccHHHHHccccccccccccccEEEccccccHHHHHHHHHccccEEEEEccccccccccccccccccccccEEEccHHHHHHHHHHcccccccccccccccccccccccEEEEEcccHHHHHHHHHHHccccccEEEEEcccccEEEEccccccccccHHHHHHHHHccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEEcccEEEEEEEHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccHHHHcccccccEEcccccHHHHHHHHHHHHcccccEEEEccccccccccccEEEEccccccccEEEEEEEEEHHHHHHHHHcccccccHHHHHcccHHHHccccccEEEEEccccHHHHHHHHHHccccEEEEEccccccccccccccccccccccEEEccHHHHHHHHHHHHHHccccccccHHHccccccccEEEEccccHHHHHHHHHHHHcccccEEEEEccccEEEEEEcHcHHcHccHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHccccEEEEEccccEEEEEEEHHHHHHHHHHHHHHHccccccccccEEEEc
Coil and Loop (DISEMBL)
MAVRLLSvgvsdlcigkpalrslsVSSSTVADALSALKRLNESYISVwscdhsapkrkattadiddhhqdsaacrCIGKVCMVDIISFLCkeenllnpesalqdpvsvllpeasgvirhlepsaSLLEAVDLLLGGvqnlviplpagtklqpkpslkstfhndseycwLTQEDLIRYFLNCigllsptpnqpinslnivddagifaiqydepaafaipLIAQSHINQTSVALvdeegrlvgdispfsfnsCDETVAAAMVTLSAGDlmaymdcgrppkDLVRLVKQRLEEKSMVGFLELMEddleissgscpdssssddesstgsaqsvrsrgysarvvhrseailchpwSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSmakaenpnfcpvwiqa
Flexible Loop (DISEMBL)
mavrllsvgvsdlcigkpalrslsvssSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGScpdssssddesstgsaqsvrsrgysARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLrsmakaenpnfcpvwiqa
Low Complexity Region (SEG)
MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEIssgscpdssssddesstgsaqsVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENPNFCPVWIQA
Disordered region (IsUnstruct)
****LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDH***************HQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTK*********TFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLEL************************************ARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENPNFCPVWI**
Disordered Region (DISOPRED)
**VR**SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSA**************QDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVI***********************YCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVK***********************************************************ILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR************CPVWIQA
Disordered Region (DISEMBL)
MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLE********************************VVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENPNFCPVWIQA
Disordered Region (DISPRO)
**V*LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPA***************NDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELM*****************************************SEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENPNFCPVWIQA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENPNFCPVWIQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
Q84WQ5	391	CBS domain-containing pro	no	no	0.900	0.948	0.413	4e-76
Q8GZA4	425	CBS domain-containing pro	no	no	0.883	0.856	0.257	4e-20
Q8GXI9	357	SNF1-related protein kina	no	no	0.441	0.509	0.24	8e-06

>sp|Q84WQ5|CBSX5_ARATH CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2

 Score =  285 bits (729), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/414 (41%), Positives = 255/414 (61%), Gaps = 43/414 (10%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MA+ LLS  VSDLC+GKP LR LS SSS+V+DA++ALK   ++++SVW+C+H        
Sbjct: 1   MALSLLSYNVSDLCLGKPPLRCLSSSSSSVSDAIAALKSSEDTFLSVWNCNHD------- 53

Query: 61  TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHL 120
               DD++ +   C C+GK+ M D+I  L K+ +  +   AL   VSVLLP+   ++ H+
Sbjct: 54  ----DDNNTE---CECLGKISMADVICHLSKDHD--HSLCALNSSVSVLLPKTRSIVLHV 104

Query: 121 EPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDS------------EYCW 168
           +PS SL+EA+DL++ G QNL++P+        KP  K   HND+             +CW
Sbjct: 105 QPSCSLIEAIDLIIKGAQNLIVPI------HTKPYTKKKQHNDNVSVTTTTHSNGQRFCW 158

Query: 169 LTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDA-GIFAIQYDEPAAFAIPLIAQSHINQ 227
           +TQED+I++ L  I   SP P   ++ L +++    + A+ Y   A+  +  ++ +   Q
Sbjct: 159 ITQEDIIQFLLGFIAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQ 218

Query: 228 TSVALVDEEG-----RLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282
           TSVA+VD EG      L+G+ISP +   CDET AAA+ TLSAGDLMAY+D   PP+ LV+
Sbjct: 219 TSVAVVDGEGDDPFTSLIGEISPMTLTCCDETAAAAVATLSAGDLMAYIDGANPPESLVQ 278

Query: 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS 342
           +V+ RLE+K ++G + L +     S+ S     SS++E+   +    RS   SAR+  +S
Sbjct: 279 IVRNRLEDKGLIGLMSLFDSLSSYSTSS---GYSSEEEAPVRTTSYGRSMSSSARMARKS 335

Query: 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396
           EAI+C+P SSLMAV++QA+A RV+Y WVVE+D   VG+VTF  +L+V R  L +
Sbjct: 336 EAIVCNPKSSLMAVMIQAVAHRVNYAWVVEKDGCFVGMVTFVDILKVFRKFLEN 389

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GZA4|CBSX6_ARATH CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana GN=CBSX6 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 188/428 (43%), Gaps = 64/428 (14%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MA   L   V DL +GKP +      + TV  A+ A+    E  I VW        RK T
Sbjct: 1   MASVFLYHVVGDLTVGKPEMVEF-YETETVESAIRAIGESTECGIPVW--------RKRT 51

Query: 61  TADIDDHHQDSA--ACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIR 118
           T  +    ++S     R +G +  +DI++FL K E  L  E A++ PVS ++   + +++
Sbjct: 52  TPSLPGFVENSEMRQQRFVGILNSLDIVAFLAKTE-CLQEEKAMKIPVSEVVSPDNTLLK 110

Query: 119 HLEPSASLLEAVDLLLGGVQNLVIP--------------LPAGTKLQP------------ 152
            ++P   L++A++++  GV+ L++P              L  G  L+             
Sbjct: 111 QVDPGTRLIDALEMMKQGVRRLLVPKSVVWRGMSKRFSILYNGKWLKNSENSSSSSGLSA 170

Query: 153 ----KPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQ 208
               +P+   T   D ++C L++ED+IR+ +  +G L+P P   I++L I++    F I+
Sbjct: 171 DSTNRPTTSMTSSRD-KFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNF-IE 228

Query: 209 YDEPAAFAI--PLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGD 266
              PA  A   PL   S I        +++ +++G+IS      CD   AA  +      
Sbjct: 229 ASLPAIEATRRPLCDPSAIAVLEQTENEQQFKIIGEISASKLWKCDYLAAAWALANLYAG 288

Query: 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSA 326
                         V  V+  +  +S   FL+      E  +G+  ++       S G  
Sbjct: 289 ------------QFVMGVEDNMSSRSFSDFLQTSFPGGE-QNGTATNAKKFSSR-SIGFN 334

Query: 327 QSVRSRGYSARVVH--RSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDC--TLVGIVT 382
            +  +R    R ++  RS  + C   SSL AV+ Q L+ R ++VWV E D    LVG+V 
Sbjct: 335 PTSPTRLSIGRSMYRGRSAPLTCKTSSSLAAVMAQMLSHRATHVWVTEADSDDVLVGVVG 394

Query: 383 FTGMLRVI 390
           +  +L  +
Sbjct: 395 YGEILTAV 402

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXI9|PV42B_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b OS=Arabidopsis thaliana GN=PV42B PE=2 SV=1

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 18/200 (9%)

Query: 66  DHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLL---PEASGVIRHLEP 122
           D    SA  + IG V M+D+++ +  ++     +  +  PVS ++   PE    +  L P
Sbjct: 67  DKQSGSARKQYIGMVTMLDVVAHIAGDDGESGLDKKMAAPVSSIIGHCPEGLS-LWSLNP 125

Query: 123 SASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCI 182
           + S+++ +++L  G+  +++PL + T+    P L     + S Y  L+Q DLI +F +  
Sbjct: 126 NTSIMDCMEMLSKGIHRVLVPLDSNTENITGPEL---VESASAYAMLSQMDLISFFFDQS 182

Query: 183 GLLSPTPNQPINSLNIVDDAGIF---------AIQYDEPAAF-AIPLIAQSHINQTSVAL 232
             L    +  +  L+ + +  +          AIQ    A   A+P++  S   +    L
Sbjct: 183 SQLHGILSHTVTDLSAIHNTVLALTSQARVKDAIQCMSIAMLNAVPIVEASGEGEDHKQL 242

Query: 233 VDEEG-RLVGDISPFSFNSC 251
           VD +  R+VG  S      C
Sbjct: 243 VDGKNRRVVGTFSASDLKGC 262

Plays redundant role with PV42a in regulating male gametogenesis and pollen tube guidance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
255556011	396	conserved hypothetical protein [Ricinus	0.941	0.979	0.601	1e-125
224079247	394	predicted protein [Populus trichocarpa]	0.944	0.987	0.571	1e-119
449457825	398	PREDICTED: CBS domain-containing protein	0.934	0.967	0.568	1e-115
225470342	384	PREDICTED: CBS domain-containing protein	0.922	0.989	0.567	1e-114
224125284	391	predicted protein [Populus trichocarpa]	0.939	0.989	0.552	1e-111
225461389	394	PREDICTED: CBS domain-containing protein	0.927	0.969	0.521	1e-104
356549353	398	PREDICTED: CBS domain-containing protein	0.936	0.969	0.540	1e-104
449434344	397	PREDICTED: CBS domain-containing protein	0.934	0.969	0.507	1e-103
224128366	411	predicted protein [Populus trichocarpa]	0.961	0.963	0.481	1e-102
356555172	395	PREDICTED: LOW QUALITY PROTEIN: CBS doma	0.941	0.982	0.523	1e-102

>gi|255556011|ref|XP_002519040.1| conserved hypothetical protein [Ricinus communis] gi|223541703|gb|EEF43251.1| conserved hypothetical protein [Ricinus communis]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/404 (60%), Positives = 307/404 (75%), Gaps = 16/404 (3%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MAV LL+  VSDLC+GKPALRSLSVS+ TVA+ALS LKR ++ Y+SVWSCDH+  K    
Sbjct: 1   MAVSLLAREVSDLCLGKPALRSLSVSA-TVAEALSGLKRSDDPYLSVWSCDHNNKKNYIN 59

Query: 61  TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVS-VLLPEASGVIRH 119
                    +S  CRCIGK+CMVDIISFLCKEENL N   ALQ+P+S VL+ +  G++R 
Sbjct: 60  NN------NNSNECRCIGKICMVDIISFLCKEENLKNLPRALQEPLSSVLVSKVYGLVRP 113

Query: 120 LEPSASLLEAVDLLLGGVQNLVIPLPA---GTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176
           LEP ASLLEA+DL+L G QNLVIP+ +     KL  + S  ST HN+ EYCWLTQED+IR
Sbjct: 114 LEPHASLLEAIDLILEGAQNLVIPVHSPFTRKKLIHRTSSYSTLHNNREYCWLTQEDIIR 173

Query: 177 YFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE 236
           Y LNCIGL SP PN  + SLNI+D   I A+ YDEPA+ A+PLI+QS + QTSVA++D E
Sbjct: 174 YLLNCIGLFSPIPNHTVESLNIIDTESILAVCYDEPASSALPLISQSLVKQTSVAILDIE 233

Query: 237 GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGF 296
           G+L+G+ISP++ NSCDE VAAA+ TLSAG+LMAY+DCG PP+DL+RLVK+RLEE+++   
Sbjct: 234 GKLIGEISPYTLNSCDELVAAAIATLSAGELMAYVDCGDPPEDLIRLVKERLEERNLEIV 293

Query: 297 LELMEDDLEI---SSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSL 353
           LELME++  I   SS     SSSSD+E   G + S   RG+S RV  R++AI+C PWSSL
Sbjct: 294 LELMEEESGISSSSSSFSSFSSSSDEEFGLGKSGSF--RGHSTRVARRTDAIVCFPWSSL 351

Query: 354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397
           +AV++QA++ R SYVWVVEED TLVG+VTFTGML+V R+R++SM
Sbjct: 352 VAVMIQAISHRASYVWVVEEDGTLVGVVTFTGMLKVFRERVKSM 395

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079247|ref|XP_002305808.1| predicted protein [Populus trichocarpa] gi|222848772|gb|EEE86319.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/401 (57%), Positives = 293/401 (73%), Gaps = 12/401 (2%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MA  +LS  VSDLC+GKPAL SLSVS+ TV +ALSALKR  + ++SVWSCD         
Sbjct: 1   MAASILSHEVSDLCLGKPALSSLSVSA-TVGEALSALKRFGDLFLSVWSCDQHHRCNSPR 59

Query: 61  TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLL-PEASGVIRH 119
           +  +D      A C+CIGKVC+ D+I FL KEENL NP  ALQ+PVS+LL  + SG++RH
Sbjct: 60  SIKVD-----FAECKCIGKVCLADVICFLSKEENLKNPGKALQEPVSLLLNSKVSGLVRH 114

Query: 120 LEPSASLLEAVDLLLGGVQNLVIPLP---AGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176
           LEP ASLLEA+DL+L G QNLVIPL       KL  K +  ST HN+ EYCWLTQED++R
Sbjct: 115 LEPHASLLEAIDLILEGAQNLVIPLHNPFTRKKLISKSTANSTLHNNREYCWLTQEDIVR 174

Query: 177 YFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE 236
           Y LN IGL SPTPN  I SLNI+D    F + YD+PAA  +PLI+QS + QTSVA++D +
Sbjct: 175 YLLNSIGLFSPTPNHTIESLNIIDTESFFTVHYDDPAA--LPLISQSLVKQTSVAILDAD 232

Query: 237 GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGF 296
           G+L+G+ISPF+ N CDETVAAA+ TLSAG+LMAY++CG PP+DL+ LVK+RLEE+++   
Sbjct: 233 GKLIGEISPFTLNFCDETVAAAIATLSAGELMAYIECGDPPEDLIMLVKERLEERNLGPA 292

Query: 297 LELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAV 356
           L+L+E++  I S S   S SS  +   G  +S R  G SARV   +E I+C+PWSSL+AV
Sbjct: 293 LDLIEEESGILSSSSDSSYSSSSDEEFGMVRSGRIAGNSARVGRSTETIVCYPWSSLVAV 352

Query: 357 IMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397
           ++QAL+ R SY WV+EED TLVG VTF GM++V+R+RLRSM
Sbjct: 353 MIQALSHRSSYTWVIEEDGTLVGGVTFAGMIKVLRERLRSM 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457825|ref|XP_004146648.1| PREDICTED: CBS domain-containing protein CBSX5-like [Cucumis sativus] gi|449527799|ref|XP_004170897.1| PREDICTED: CBS domain-containing protein CBSX5-like [Cucumis sativus]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/410 (56%), Positives = 296/410 (72%), Gaps = 25/410 (6%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSC-DHSAPKRKA 59
           MA  LL+  VSDLC+GKPALRS+S+S+ T+ADALS L +++E YISVWSC DHS+ K   
Sbjct: 1   MAASLLACEVSDLCLGKPALRSISISA-TLADALSILTKIDEGYISVWSCGDHSSSK--- 56

Query: 60  TTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRH 119
             AD D H      CRC+GKVCMVDII FLC++ENLL P   LQ P+SVL+PE   ++RH
Sbjct: 57  --ADSDLH------CRCVGKVCMVDIICFLCRQENLLQPAIGLQSPISVLIPEGFELVRH 108

Query: 120 LEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQP---KPSLK---STFHNDSEYCWLTQED 173
           LEP ASL+EA+DL+  GV NLVIP+      +    K SL    S+ HND EYCWL  ED
Sbjct: 109 LEPHASLMEAIDLIHDGVHNLVIPIKMSISKRKNILKKSLANSISSLHNDQEYCWLAPED 168

Query: 174 LIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALV 233
           +IRY LN IGL S T   PINS NI+D   I A++YDE A   +PLI+Q+ I+Q+SVA+V
Sbjct: 169 IIRYLLNSIGLFSTTAANPINSFNIIDTNNILAVRYDESALSILPLISQALIHQSSVAIV 228

Query: 234 DEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSM 293
           D + +L+G+ISPF+ N CDETV AA+ TL+AG+LM Y+DCG PP DLV+LVK+RLEEK++
Sbjct: 229 DLDDKLIGEISPFTLNFCDETVVAAIATLTAGELMGYIDCGGPPDDLVQLVKERLEEKNL 288

Query: 294 VGFLELMEDD-LEISSGSCPDSSSSDDESSTGSAQSVRSR-----GYSARVVHRSEAILC 347
              LE +E++ L ISS S    SSSDDE   GS+ S   R     GYSARV+ RSEAI+C
Sbjct: 289 EAVLEWVEEESLTISSSSSSICSSSDDEFGCGSSSSGSGRSGRICGYSARVMRRSEAIVC 348

Query: 348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397
           +PW+SL+AV++QALA RVSY+WV++ED TL G VTF  +L V RDRL+ +
Sbjct: 349 YPWNSLVAVMIQALAHRVSYMWVIQEDGTLAGTVTFPSLLAVFRDRLKFL 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470342|ref|XP_002269338.1| PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/402 (56%), Positives = 296/402 (73%), Gaps = 22/402 (5%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MAV LL   VSDLC+GKPALRSL VS+ TVADAL+ALKR  ++Y+SVWSCDH++   K+ 
Sbjct: 1   MAVSLLGHEVSDLCLGKPALRSLPVSA-TVADALAALKRSGDAYLSVWSCDHTSKINKS- 58

Query: 61  TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHL 120
                 H +D   CRCIGK+CMVD++ FLC+E+NL  P  ALQ P+S+LLP+  G++RHL
Sbjct: 59  ------HLED---CRCIGKICMVDVVCFLCREDNLSCPSDALQSPLSLLLPKVPGLVRHL 109

Query: 121 EPSASLLEAVDLLLGGVQNLVIPLPAGT----KLQPKPSLKSTFHNDSEYCWLTQEDLIR 176
           +P++ LLEA+DL+L G QN+VIP+ + T    KL PKPS  ST HN  E+CWLTQED++R
Sbjct: 110 KPNSRLLEAIDLMLEGAQNIVIPIQSRTNPRKKLVPKPSFNSTLHNGVEFCWLTQEDVVR 169

Query: 177 YFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE 236
           + LN IG  SP P   I SLNI+D   I ++ Y +PA+ A+  I+QS INQTSVA++D+E
Sbjct: 170 FLLNSIGSFSPLPGLTIESLNIIDTENIPSVYYHDPASSALTAISQSLINQTSVAVLDQE 229

Query: 237 GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGF 296
            +LVG+ISPF+   CDETVAAA+ TLSAGDLMAY+DCG PP+DLV+LVK RLEE+ +  F
Sbjct: 230 NKLVGEISPFTLACCDETVAAAIATLSAGDLMAYIDCGGPPEDLVQLVKARLEERKLGAF 289

Query: 297 LELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAV 356
           L+LM+++          SSSS  +   G  +   S  YSAR+  RSEAI+C+PWSSLMAV
Sbjct: 290 LDLMDEEFSY-------SSSSSSDEEFGFGRRGGSGKYSARMARRSEAIVCYPWSSLMAV 342

Query: 357 IMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMA 398
           ++QALA RVSYVWV+EED +L GIVTF+G+ +V R  LR+ A
Sbjct: 343 MIQALAHRVSYVWVIEEDWSLAGIVTFSGIFKVFRQHLRTQA 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125284|ref|XP_002329767.1| predicted protein [Populus trichocarpa] gi|222870829|gb|EEF07960.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/402 (55%), Positives = 290/402 (72%), Gaps = 15/402 (3%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MAV +LS  VSDLC+GKPAL SLS +S+TV DALSALKR  + ++SVWSCDH        
Sbjct: 1   MAVSILSNEVSDLCLGKPALSSLS-ASATVGDALSALKRSGDLFLSVWSCDHLHHCNSPI 59

Query: 61  TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLL-PEASGVIRH 119
           +  +D        C+C+GKVC+VD+I FL  EENL NP  ALQ+PVSVLL  +  G++RH
Sbjct: 60  SIQVDFEE-----CKCVGKVCLVDVICFLSVEENLKNPGKALQEPVSVLLNSKVPGLVRH 114

Query: 120 LEPSASLLEAVDLLLGGVQNLVIPLP---AGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176
           LEP A    A+D +LGG  NLVIPL       KL  K +  ST HN+ EYCWL QED+IR
Sbjct: 115 LEPHAR--HAIDAILGGALNLVIPLRNPFTRKKLVYKSAANSTLHNNREYCWLAQEDIIR 172

Query: 177 YFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE 236
           Y LN IGL SPTPN  I SL ++     F + YD+PA+ A+PLI+QS I QTSVA++D +
Sbjct: 173 YLLNSIGLFSPTPNHTIESLGLIYSESFFTVHYDDPASSALPLISQSLIKQTSVAILDTD 232

Query: 237 GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGF 296
           G+L+G+ISPF+ N CDETVAAA+ TLSAG+LMAY+DC  PP+DL+RLVK+RLEE+++   
Sbjct: 233 GKLIGEISPFTLNFCDETVAAAIATLSAGELMAYIDCRDPPEDLLRLVKERLEERNLGPA 292

Query: 297 LELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAV 356
           L+L+E++  ISS S   SSSSD+E   G +  V   G+SA V   ++  +C+PWSSL+AV
Sbjct: 293 LDLIEEESGISSLS-SYSSSSDEEFGMGRSGGV--SGHSAGVRGTAQTTVCYPWSSLVAV 349

Query: 357 IMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMA 398
           ++QAL+ RVS  WV+EED TL+G+VTF GM++V+R+RL+SMA
Sbjct: 350 MIQALSHRVSCTWVIEEDGTLLGVVTFAGMIKVLRERLKSMA 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461389|ref|XP_002284800.1| PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera] gi|302143038|emb|CBI20333.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/410 (52%), Positives = 289/410 (70%), Gaps = 28/410 (6%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MA  LL+  VSDLC+GKPALRSLS+S+ TV +ALSALK   +S+ISVWSCDHSA      
Sbjct: 1   MAFSLLAHVVSDLCLGKPALRSLSISA-TVGEALSALKTSEDSFISVWSCDHSA------ 53

Query: 61  TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHL 120
             +I D       CRC+GK+CMVD++ +LCK++NLL+P SAL+ PVS LLP   G++ H+
Sbjct: 54  --NIQDE------CRCVGKICMVDVVCYLCKDDNLLSPSSALKSPVSDLLPNIPGLVMHV 105

Query: 121 EPSASLLEAVDLLLGGVQNLVIPLPAGT------KLQPKPSLK-STFHNDSEYCWLTQED 173
           EP +SLLEA+DL+L G QNLV+P+ +        KL  KP    +T H   EYCWLTQED
Sbjct: 106 EPHSSLLEAIDLILQGAQNLVVPIRSSISNSSRRKLYQKPQTSPTTMHKGCEYCWLTQED 165

Query: 174 LIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALV 233
           ++RY L+ IGLLSP    PI++L I+D   + AI Y  PA+ ++P I +S  +QTSVA+V
Sbjct: 166 VVRYLLSSIGLLSPIAALPIDTLRIID-TDVLAINYHSPASSSLPAILRSLRDQTSVAVV 224

Query: 234 DEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSM 293
           DE G L+G+ISPF+   CDETVAAA+ TLS+GDLM+Y+DCG PP+++V+ VK RL+++++
Sbjct: 225 DENGALIGEISPFTLACCDETVAAAITTLSSGDLMSYIDCGGPPEEIVKTVKTRLKQRNL 284

Query: 294 VGFLELMEDDLEISSGSCPDSSSSDDESSTGSA-----QSVRSRGYSARVVHRSEAILCH 348
            G LE    D   +S     SS  +   S  +A     +  RS  YSAR+V R+EAI+CH
Sbjct: 285 EGMLEEFALDSSSTSSLSASSSDEESSPSPKTALYRPGKYSRSSSYSARMVRRAEAIVCH 344

Query: 349 PWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMA 398
           P SSL+AV++QA+A RV+YVWV+E+DC L GIVTF+ ML++ R+ L+SMA
Sbjct: 345 PGSSLVAVMIQAIAHRVNYVWVIEDDCCLAGIVTFSSMLKIFREHLQSMA 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549353|ref|XP_003543058.1| PREDICTED: CBS domain-containing protein CBSX5-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/405 (54%), Positives = 286/405 (70%), Gaps = 19/405 (4%)

Query: 2   AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATT 61
           A RL    +SDLC+GKP LRSLSV   TVADAL+ALKR++++Y+SVW+C+HS  +++   
Sbjct: 3   AARLSGHELSDLCLGKPPLRSLSVRD-TVADALAALKRIDDTYVSVWNCNHSFIRKQ--Q 59

Query: 62  ADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGV-IRHL 120
             I    Q    C CIGKVCMVDII FL K +NL +P +A   P+S LL + S V +RHL
Sbjct: 60  PQIKSQEQLQCCCTCIGKVCMVDIICFLSKPQNLSSPSAAFLSPISALLHDNSAVLVRHL 119

Query: 121 EPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKST--FHND-SEYCWLTQEDLIRY 177
            P+ASLLEA+D++  GVQNLVIP+    ++Q + SL S    HND + YCWLTQED+ RY
Sbjct: 120 PPTASLLEAIDVMHEGVQNLVIPI----QIQFE-SLNSNNVHHNDNTTYCWLTQEDVFRY 174

Query: 178 FLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG 237
            LN IG+ SPTP  PIN+L ++D   +FA+ YD+PA+  + L+A S + Q+S+A+VD  G
Sbjct: 175 LLNSIGVFSPTPGNPINTLGVIDTQNLFAVCYDDPASSILDLLALSLLYQSSIAIVDPNG 234

Query: 238 RLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEK-SMVGF 296
           +  G+ISP   NSCDE+V  A+ TLSAGDL AY+DCG PP+DLV+LVK+R++EK      
Sbjct: 235 KFGGEISPVMLNSCDESVVPAIATLSAGDLTAYIDCGGPPEDLVQLVKERVKEKVEEQNL 294

Query: 297 LELMEDDLE----ISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSS 352
           LEL+ D+       S  S   S SSD+E  +G  ++ +  GYSARV  RSEAI+C+ WSS
Sbjct: 295 LELLGDETTGTGLTSWSSFSSSCSSDEEFCSG--KNWKLGGYSARVGRRSEAIVCYRWSS 352

Query: 353 LMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397
           L+AV++QALA RVSYVWVVEED TL GIVTF GML+V RD L+SM
Sbjct: 353 LVAVMIQALAHRVSYVWVVEEDGTLTGIVTFQGMLKVFRDHLKSM 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434344|ref|XP_004134956.1| PREDICTED: CBS domain-containing protein CBSX5-like [Cucumis sativus]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/408 (50%), Positives = 278/408 (68%), Gaps = 23/408 (5%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MAVRLL   +SD+C+GKPAL S+S+S+ T+ADALSALK+L E+YISVW+C     K  + 
Sbjct: 1   MAVRLLDHQLSDICLGKPALTSISLSA-TLADALSALKKLGENYISVWNCSSHYSKSSSH 59

Query: 61  TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHL 120
                        CRCIGK+ ++D++ FLCKEENL  P  ALQ  VSVL+P    ++RHL
Sbjct: 60  YD-----------CRCIGKISVLDVVLFLCKEENLSQPALALQSSVSVLIPPVPVLVRHL 108

Query: 121 EPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKST-------FHNDSEYCWLTQED 173
           EP ASL+EA+DLLL G QNLV+P+   T  + +  +           HN  EYCW+TQED
Sbjct: 109 EPHASLMEAIDLLLEGAQNLVVPIQTRTSAKSREKVLEVVAPFDCPLHNGLEYCWITQED 168

Query: 174 LIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALV 233
           +IRY LN IGL SPT   P+NSLN +D   I A+ YD+PA  A+PL++Q+ I+Q+S+A+V
Sbjct: 169 IIRYLLNSIGLFSPTSITPVNSLNAIDTVNILALHYDDPALSALPLLSQAIIHQSSIAIV 228

Query: 234 DEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSM 293
           D +G+L+G+ISP + NS DET+ AA+VTLSAG+LMAY++C  PP+ LV+LVK RLE +++
Sbjct: 229 DSDGKLIGEISPLTLNSFDETITAAIVTLSAGELMAYVNCNDPPEYLVQLVKDRLEGRNL 288

Query: 294 VGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRS---RGYSARVVHR-SEAILCHP 349
            G LE +E++  +S+ S   S  S        +   RS   R  S R V R SE  +C+P
Sbjct: 289 RGLLEWVEEESAMSAMSSCSSFCSSSSDDDSGSWWGRSGKLRKCSTRQVRRSSEVAVCNP 348

Query: 350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397
            SSL+AV++QALA RV Y+WV EED  LVGI+TFT ML+V  +RL+SM
Sbjct: 349 RSSLVAVMIQALALRVPYMWVTEEDECLVGIITFTSMLKVFHERLKSM 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128366|ref|XP_002329144.1| predicted protein [Populus trichocarpa] gi|222869813|gb|EEF06944.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/413 (48%), Positives = 284/413 (68%), Gaps = 17/413 (4%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MAV LL+  VSDLC+GKPALRSL++++ T+A+AL ALK  ++++ISVW+CDH+A      
Sbjct: 1   MAVSLLAHEVSDLCLGKPALRSLALTT-TIAEALFALKNSDDNFISVWNCDHAAKTNNDY 59

Query: 61  TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHL 120
             + ++   D   C+C+GKV MVD++ +LCK+ENLL P  AL+ PVSVLLPE  G++ H+
Sbjct: 60  KGNCEEEGCDVCECKCVGKVSMVDVVCYLCKDENLLFPSDALKAPVSVLLPEIPGMVVHV 119

Query: 121 EPSASLLEAVDLLLGGVQNLVIPLPAGT----KLQPKPSLKS-TFHNDSEYCWLTQEDLI 175
           EP++SLLEA+DL+L G +NLV+P+        K   K S+ S T HN  E+CWLTQED+I
Sbjct: 120 EPTSSLLEAIDLILQGAKNLVVPIKTRYSTRRKQHQKLSITSPTIHNGREFCWLTQEDII 179

Query: 176 RYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE 235
           R+FL  IGL +P P   I++L I+       I Y  PA   +  I++S  ++TSVA++D 
Sbjct: 180 RFFLGSIGLFAPLPALSIDTLGII-STEFLTIDYHSPAISELEAISRSLADETSVAVIDS 238

Query: 236 EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVG 295
           +G L+G++SPF+   CD++VAAA+ TLS+GDLMAY+DCG PP+DLV++V +RL+E+ +  
Sbjct: 239 DGILIGELSPFTLACCDDSVAAAITTLSSGDLMAYIDCGGPPEDLVKVVMERLKERGLEA 298

Query: 296 FLELMEDDLEISSGSCPDSSSSDDESSTG----------SAQSVRSRGYSARVVHRSEAI 345
            L+   +    S+ S   S SS  +  +           S +  RS  YSAR+V R+EAI
Sbjct: 299 MLQEFTNSSCYSTTSSCQSQSSSSDEESASSTPVSTLHRSGKYSRSMSYSARMVRRAEAI 358

Query: 346 LCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMA 398
           +CHP SSL+AV++QA+A RV+YVWV+E+DC+LVGIV F  ML+V R+ L  MA
Sbjct: 359 VCHPKSSLVAVMIQAIAHRVNYVWVIEDDCSLVGIVRFYDMLKVFRESLEDMA 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555172|ref|XP_003545910.1| PREDICTED: LOW QUALITY PROTEIN: CBS domain-containing protein CBSX5-like [Glycine max]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/403 (52%), Positives = 283/403 (70%), Gaps = 15/403 (3%)

Query: 1   MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
           MA RL    +SDLC+GKP LR+LSV   TVADAL+ALKR++++Y+SVW+C+HS  +++  
Sbjct: 1   MAARLSGHELSDLCLGKPPLRALSVRD-TVADALAALKRIDDTYVSVWNCNHSFIRKQQP 59

Query: 61  TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGV-IRH 119
                   Q+   C CIGKVCM+DII FL K ++L +P +AL  P+S  L + S V + H
Sbjct: 60  QI----QSQNQCCCTCIGKVCMLDIICFLSKPQSLSSPSAALHSPISAALQDNSAVLVLH 115

Query: 120 LEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL 179
           L PSASLLEA+D++  GVQNLVIP+    +++   S     +N++ YCWLTQED++RY L
Sbjct: 116 LPPSASLLEAIDVMQEGVQNLVIPIQ--NQVESLDSNNVHHNNNTTYCWLTQEDVLRYLL 173

Query: 180 NCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRL 239
           N IG+ SPTP  PIN+L ++D   +FA+ YD+PA+  + L+A S I Q+SVA+VD  G+ 
Sbjct: 174 NSIGVFSPTPGNPINTLGVIDTKNLFAVCYDDPASSILDLLALSLIYQSSVAIVDPNGKF 233

Query: 240 VGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEK-SMVGFLE 298
            G+ISP   NS DE+V  A+ TLSAGDL AY+DCG PP+DLV+LVK+R++EK      LE
Sbjct: 234 GGEISPVMLNSYDESVVPAIATLSAGDLTAYIDCGGPPEDLVQLVKERVKEKVEEQNMLE 293

Query: 299 LMEDDLEISS----GSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLM 354
           L+ D+   +      S   S SSD+E  +G  ++ +  GYSARV  RSEAI+CH WSSL+
Sbjct: 294 LLGDETTRTGLTSWSSFSSSCSSDEEFCSG--KNWKLGGYSARVGRRSEAIVCHRWSSLV 351

Query: 355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397
           AV++QAL+ RVSYVWVVEED TL GIVTF GML+V RD L+SM
Sbjct: 352 AVMIQALSHRVSYVWVVEEDGTLTGIVTFQGMLKVFRDHLKSM 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2123999	391	CBSX5 "AT4G27460" [Arabidopsis	0.915	0.964	0.409	3.4e-77
TAIR|locus:2164027	408	AT5G53750 "AT5G53750" [Arabido	0.922	0.931	0.413	1.1e-76
TAIR|locus:2206265	425	CBSX6 "AT1G65320" [Arabidopsis	0.300	0.291	0.294	2.4e-21
TAIR|locus:2037853	352	AT1G15330 "AT1G15330" [Arabido	0.371	0.434	0.227	2.3e-06

TAIR|locus:2123999 CBSX5 "AT4G27460" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 167/408 (40%), Positives = 248/408 (60%)

Query:     1 MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
             MA+ LLS  VSDLC+GKP LR LS SSS+V+DA++ALK   ++++SVW+C+H        
Sbjct:     1 MALSLLSYNVSDLCLGKPPLRCLSSSSSSVSDAIAALKSSEDTFLSVWNCNHD------- 53

Query:    61 TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHL 120
                 DD++ +   C C+GK+ M D+I  L K+ +  +   AL   VSVLLP+   ++ H+
Sbjct:    54 ----DDNNTE---CECLGKISMADVICHLSKDHD--HSLCALNSSVSVLLPKTRSIVLHV 104

Query:   121 EPSASLLEAVDLLLGGVQNLVIPL---PAGTKLQPKP--SLKSTFH-NDSEYCWLTQEDL 174
             +PS SL+EA+DL++ G QNL++P+   P   K Q     S+ +T H N   +CW+TQED+
Sbjct:   105 QPSCSLIEAIDLIIKGAQNLIVPIHTKPYTKKKQHNDNVSVTTTTHSNGQRFCWITQEDI 164

Query:   175 IRYFLNCIGLLSPTPNQPINSLNIVDDAG-IFAIQYDEPAAFAIPLIAQSHINQTSVALV 233
             I++ L  I   SP P   ++ L +++    + A+ Y   A+  +  ++ +   QTSVA+V
Sbjct:   165 IQFLLGFIAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQTSVAVV 224

Query:   234 DEEG-----RLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRL 288
             D EG      L+G+ISP +   CDET AAA+ TLSAGDLMAY+D   PP+ LV++V+ RL
Sbjct:   225 DGEGDDPFTSLIGEISPMTLTCCDETAAAAVATLSAGDLMAYIDGANPPESLVQIVRNRL 284

Query:   289 EEKSMVGFLELMEDDLEIXXXXXXXXXXXXXXXXXXXXXXVRSRGYSARVVHRSEAILCH 348
             E+K ++G + L +    +                       RS   SAR+  +SEAI+C+
Sbjct:   285 EDKGLIGLMSLFDS---LSSYSTSSGYSSEEEAPVRTTSYGRSMSSSARMARKSEAIVCN 341

Query:   349 PWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396
             P SSLMAV++QA+A RV+Y WVVE+D   VG+VTF  +L+V R  L +
Sbjct:   342 PKSSLMAVMIQAVAHRVNYAWVVEKDGCFVGMVTFVDILKVFRKFLEN 389

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164027 AT5G53750 "AT5G53750" [Arabidopsis thaliana (taxid:3702)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 173/418 (41%), Positives = 260/418 (62%)

Query:     1 MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
             MA+ LLS  +SDLCIGKP LR LSV+++TVADA++ALK  +E +++VWSC+H        
Sbjct:     1 MALTLLSHELSDLCIGKPPLRCLSVATATVADAIAALKSSDEPFLTVWSCNH-------- 52

Query:    61 TADIDDHHQDSAACRCIGKVCMVDIISFLCK-EENLLNPESALQDPVSVLLPEASGVIRH 119
                 D+   D+  C C+GK+CM D+I +L K + N+L+  SA    VSVLLP++  ++ H
Sbjct:    53 ----DEKTDDNDKCECLGKICMADVICYLSKFDNNVLSLSSAFDASVSVLLPKSRALVVH 108

Query:   120 LEPSASLLEAVDLLLGGVQNLVIPLPAGT---KLQPKPSLK-----------STFHNDS- 164
             ++ S SL+EA+DL++ G QNL++P+   +   + Q +  LK           ST H +S 
Sbjct:   109 VQSSCSLIEAIDLIIKGAQNLIVPIHTKSITKRRQQQKLLKRNVVVSLTNATSTTHKNSR 168

Query:   165 EYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAG-IFAIQYDEPAAFAIPLIAQS 223
             E+CW+TQED+IR+ L+ I + SP P+  I+ L +++    I A+ Y   AA A+  I+++
Sbjct:   169 EFCWITQEDIIRFLLDSISVFSPLPSLSISDLGVINSTHTILAVDYYSSAASAVSAISRA 228

Query:   224 HINQTSVALV----DEEGR---LVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRP 276
              ++  SVA+V    D+E     L+G+ISP +   CDET  AA+ TLSAGDLM+Y+D   P
Sbjct:   229 ILDNVSVAVVGKGCDQEDPCMVLIGEISPMTLACCDETAVAAVATLSAGDLMSYIDGSGP 288

Query:   277 PKDLVRLVKQRLEEKSMVGFLELMEDDLEIXXXXXXXXXXXXXXXXXXXXXXVRSRGYSA 336
             P+ LV +V+ RLE+K MVG + L+ D L +                       RS   +A
Sbjct:   289 PESLVGVVRNRLEDKGMVGLISLI-DSLSLSSGSSSDEESPAGKTRMTSSYG-RSVSSAA 346

Query:   337 RVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL 394
             R+  +S AI+C+  SSLMAV++QA+A RVSYVWV++ED  L+G+VTF  +L++ R+ L
Sbjct:   347 RMARKSVAIVCNRKSSLMAVMIQAIAHRVSYVWVIDEDGCLIGMVTFVDILKLFREFL 404

GO:0003674 "molecular_function" evidence=ND

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2206265 CBSX6 "AT1G65320" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
 Identities = 40/136 (29%), Positives = 72/136 (52%)

Query:    10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQ 69
             V DL +GKP +      + TV  A+ A+    E  I VW        RK TT  +    +
Sbjct:    10 VGDLTVGKPEMVEF-YETETVESAIRAIGESTECGIPVW--------RKRTTPSLPGFVE 60

Query:    70 DSAAC--RCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLL 127
             +S     R +G +  +DI++FL K E  L  E A++ PVS ++   + +++ ++P   L+
Sbjct:    61 NSEMRQQRFVGILNSLDIVAFLAKTE-CLQEEKAMKIPVSEVVSPDNTLLKQVDPGTRLI 119

Query:   128 EAVDLLLGGVQNLVIP 143
             +A++++  GV+ L++P
Sbjct:   120 DALEMMKQGVRRLLVP 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2037853 AT1G15330 "AT1G15330" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 36/158 (22%), Positives = 78/158 (49%)

Query:    77 IGKVCMVDIISFLCKEE-NLLNPESALQDPVSVLLPEA-SGV-IRHLEPSASLLEAVDLL 133
             IG + M+DI++ +  E+ NL + +  +   VS ++     G+ +  L P+ S+LE +++ 
Sbjct:    84 IGILTMLDILAHIAGEDSNLSDLDRKMSSQVSSIIGHCLEGLSLWTLNPNTSVLECMEVF 143

Query:   134 LGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNC-IGLLSPTPNQP 192
               G+   ++P+ +  +     +      + S Y  LTQ DL+R+  +     L    ++ 
Sbjct:   144 SKGIHRALVPVESSIESNNTIAGVELIESASAYKMLTQMDLLRFLKDHHFDDLKTVLSRS 203

Query:   193 INSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSV 230
             I+ L  V+D+ ++AI      + AI ++  + +N   +
Sbjct:   204 ISDLGAVNDS-VYAITERTTVSNAINVMKGALLNAVPI 240

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0003006 "developmental process involved in reproduction" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0048443 "stamen development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00040536 hypothetical protein (395 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	2e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	4e-04
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	0.003

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 20/128 (15%)

Query: 120 LEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL 179
           +  +ASL +A+++L  G  + V    A T+ +          +      L+Q  L+ +  
Sbjct: 6   VPSTASLFQAIEILGSGGIHRV----AVTEEE----------SGEVIGILSQRRLVEFLW 51

Query: 180 NCIGL---LSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE 236
                   L P    P+  L I     + +I  D+P   A+ L+    I  +SVA+VD +
Sbjct: 52  ENARSFPGLDPLYPIPLRDLTIGTSD-VISINGDQPLIDALHLMHNEGI--SSVAVVDNQ 108

Query: 237 GRLVGDIS 244
           G L+G+IS
Sbjct: 109 GNLIGNIS 116

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRV 389
             I C P S+L  VI + +A +V  VWVV+E+   +G++T T ++ +
Sbjct: 80  PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 342 SEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGM-LRVIRDRLRSMAKA 400
           ++     P +++         +RVS V V+ +   LVGI T   + LRV+       A+ 
Sbjct: 1   TKPATVSPTTTVQEAAKLMREKRVSCVLVM-DGNKLVGIFTSKDIALRVV-------AQG 52

Query: 401 ENPNFCPV 408
            +P    V
Sbjct: 53  LDPESTLV 60

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.97
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.8
COG2524	294	Predicted transcriptional regulator, contains C-te	99.74
COG2524	294	Predicted transcriptional regulator, contains C-te	99.68
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.63
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.61
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.6
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.57
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.55
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.54
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.53
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.51
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.51
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.49
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.49
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.49
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.49
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.45
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.45
COG2905	610	Predicted signal-transduction protein containing c	99.45
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.45
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.44
COG3620	187	Predicted transcriptional regulator with C-termina	99.44
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.43
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.43
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.43
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.43
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.42
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.42
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.42
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.42
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.41
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.41
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.41
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.41
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.4
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.4
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.4
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.4
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.4
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.39
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.39
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.39
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.39
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.38
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.38
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.38
COG0517	117	FOG: CBS domain [General function prediction only]	99.38
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.37
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.37
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.37
COG3620	187	Predicted transcriptional regulator with C-termina	99.37
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.36
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.36
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.36
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.35
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.35
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.35
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.35
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.34
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.34
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.34
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.34
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.34
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.33
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.33
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.33
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.33
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.33
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.32
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.32
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.32
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.31
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.31
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.31
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.31
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.31
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.31
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.3
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.3
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.29
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.29
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.29
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.29
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.28
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.28
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.28
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.27
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.27
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.26
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.26
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.25
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.25
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.25
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.24
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.23
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.23
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.23
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.23
COG2905	610	Predicted signal-transduction protein containing c	99.22
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.22
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.21
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.21
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.2
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.2
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.2
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.19
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.18
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.18
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.18
COG4109	432	Predicted transcriptional regulator containing CBS	99.17
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.17
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.17
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.16
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.16
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.16
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.15
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.15
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.15
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.15
COG0517	117	FOG: CBS domain [General function prediction only]	99.14
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.14
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.13
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.13
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.13
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.13
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.12
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.12
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.11
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.11
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.11
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.11
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.11
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.1
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.1
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.1
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.1
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.09
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.08
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.08
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.07
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.07
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.06
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.06
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.06
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.06
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.05
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.05
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.05
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.05
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.04
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.04
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.03
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.03
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.02
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.02
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.02
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.01
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.01
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.99
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.99
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.97
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.97
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.95
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.95
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.92
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.92
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.91
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.91
PRK11573	413	hypothetical protein; Provisional	98.91
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.9
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.89
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.85
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.85
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.78
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.75
PRK11573	413	hypothetical protein; Provisional	98.74
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.72
COG4109	432	Predicted transcriptional regulator containing CBS	98.65
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.62
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.6
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.49
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.4
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.3
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.23
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.22
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.22
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.17
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.93
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	97.82
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.7
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.66
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.63
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	97.6
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.59
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	97.58
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.3
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.28
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.88
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.49
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	95.28
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.82
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	91.09
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	89.62
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	80.17

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.97  E-value=9.6e-31  Score=264.62  Aligned_cols=290  Identities=23%  Similarity=0.341  Sum_probs=225.7

Q ss_pred             cccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178            2 AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC   81 (412)
Q Consensus         2 ~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt   81 (412)
                      +.|+..+++.+++....+++.++. ..++.+|+++|..++..++||||.+                     .++++|+++
T Consensus        60 ~~~~~~~~~~~~~p~~~~l~~~d~-~~~v~~a~~~l~~~~~~~~p~~~~~---------------------~~~~~g~~~  117 (381)
T KOG1764|consen   60 SKFMKSHTCYDLLPTSSKLVVFDT-KLSVKKAFNALVQNGVRAAPLWDSK---------------------KQQFVGMLT  117 (381)
T ss_pred             HHHHhccCcccccCCcceeEEeeC-CCcHHHHHHHHHhhceeeeccccCc---------------------cceeEEEEE
Confidence            357889999999988889999999 9999999999999999999999975                     368999999


Q ss_pred             hHHHHHHhhhcccC-CCccc---------ccCCchhhhccCC-CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCC
Q 015178           82 MVDIISFLCKEENL-LNPES---------ALQDPVSVLLPEA-SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTK  149 (412)
Q Consensus        82 ~~Dil~~l~~~~~l-~~~~~---------~l~~~V~dvm~~~-~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~  149 (412)
                      +.|++.++...... .+...         ....++..+.... ..++..+.|..++.+++..+. +++||+||.+.    
T Consensus       118 ~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~----  193 (381)
T KOG1764|consen  118 ITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDP----  193 (381)
T ss_pred             HHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecc----
Confidence            99999988752110 00000         1123444444433 344599999999999999888 99999999863    


Q ss_pred             CCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcC--CCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCC
Q 015178          150 LQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLL--SPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQ  227 (412)
Q Consensus       150 ~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l--~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~  227 (412)
                                 +.+.+.+++||..|++|++.+...+  ..++.+++.+|++++.+++..+..++|+.+|+++|.+.++  
T Consensus       194 -----------~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~i--  260 (381)
T KOG1764|consen  194 -----------ETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRI--  260 (381)
T ss_pred             -----------cccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCc--
Confidence                       2246788999999999999976554  4677899999999986669999999999999999999999  


Q ss_pred             ceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhccc
Q 015178          228 TSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEIS  307 (412)
Q Consensus       228 s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  307 (412)
                      +++||||..|+.+|+||..|+.+.-           ...         ....+...        .+...+.   .     
T Consensus       261 s~lpvV~~~g~~v~~~s~~Dv~~l~-----------~~~---------~~~~~~~~--------~l~~~~~---~-----  304 (381)
T KOG1764|consen  261 SALPVVDENGKKVGNYSRFDVIHLA-----------REG---------TYNNLDLS--------CLSEALS---H-----  304 (381)
T ss_pred             CcceEEcCCCceecceehhhhhhhh-----------hcC---------ccCccchh--------HHHHHhh---h-----
Confidence            9999999999999997766666521           110         00000000        0010000   0     


Q ss_pred             CCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHH
Q 015178          308 SGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGML  387 (412)
Q Consensus       308 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL  387 (412)
                                                   ......+++||++.+||.+++++|+++++||+||||++|+++||||++||+
T Consensus       305 -----------------------------~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil  355 (381)
T KOG1764|consen  305 -----------------------------RPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDIL  355 (381)
T ss_pred             -----------------------------cccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHH
Confidence                                         011234599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 015178          388 RVIRDRLR  395 (412)
Q Consensus       388 ~~l~~~~~  395 (412)
                      .++.....
T Consensus       356 ~~l~~~p~  363 (381)
T KOG1764|consen  356 SYLVLTPS  363 (381)
T ss_pred             HHHHhCcc
Confidence            99987644

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.80  E-value=1.3e-19  Score=172.51  Aligned_cols=229  Identities=17%  Similarity=0.261  Sum_probs=164.3

Q ss_pred             ccCCCcccccCCchhhhcc-----CC-CC-ceEecCCCCcHHHHHHHHhcCCceeeecCCCCCC----C---CCCC----
Q 015178           93 ENLLNPESALQDPVSVLLP-----EA-SG-VIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTK----L---QPKP----  154 (412)
Q Consensus        93 ~~l~~~~~~l~~~V~dvm~-----~~-~~-~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~----~---~~~~----  154 (412)
                      ++++++..+..  ..-+|+     .. ++ ++++|-.++-++-.+.+++|+.-|..+|..-...    +   ++.|    
T Consensus       124 rcLHPPsgAvA--LtavlgGpav~~~g~~F~l~Pval~SliLv~~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rv  201 (382)
T COG3448         124 RCLHPPSGAVA--LTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRV  201 (382)
T ss_pred             cCCCCCchHHH--HHHHhcCcccccCCCCceehhhhhhhHHHHHHHHHHHHHhcCCCCCccCCCcccccCCCCCCchhcc
Confidence            55655554433  444454     12 33 5889999999999999999888888888631111    0   1111    


Q ss_pred             CCC-----cccCCCCeeeeecHHHHHHHHHHc-cCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCc
Q 015178          155 SLK-----STFHNDSEYCWLTQEDLIRYFLNC-IGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQT  228 (412)
Q Consensus       155 ~~~-----~~~~~~~~v~iITq~DIv~~l~~~-~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s  228 (412)
                      +++     +.......+-.|+..|+-+.|.+. ..++.. ...++.+-+||+++ |+++++++++.+|.++|.+|++  +
T Consensus       202 gfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R-~~~~LtcadIMSrd-Vvtv~~~ts~dhA~~ll~~H~i--k  277 (382)
T COG3448         202 GFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRR-RMGELTCADIMSRD-VVTVSTDTSIDHARKLLQEHRI--K  277 (382)
T ss_pred             CCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHH-HhccccHHHhcCcc-ceecCCcCChHHHHHHHHHcCc--c
Confidence            121     233334455589999999988763 111110 02234444689999 9999999999999999999999  9


Q ss_pred             eeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccC
Q 015178          229 SVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISS  308 (412)
Q Consensus       229 ~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  308 (412)
                      ++||+|++.+++|+                   ++.+||.+....     ..    +++|         ..+.       
T Consensus       278 aLPV~d~~~rl~Gi-------------------Vt~~dl~~~a~~-----~p----~qrl---------r~~~-------  313 (382)
T COG3448         278 ALPVLDEHRRLVGI-------------------VTQRDLLKHARP-----SP----FQRL---------RFLR-------  313 (382)
T ss_pred             cccccccccceeee-------------------eeHHHHhhccCc-----ch----HHHh---------hccC-------
Confidence            99999999999999                   667777764321     01    1122         0011       


Q ss_pred             CCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          309 GSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       309 ~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                                              ...++.+|+.++.|+.|+++..+.+..+.+.+.|++||+|++|+++||||++|+|.
T Consensus       314 ------------------------~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDlia  369 (382)
T COG3448         314 ------------------------PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIA  369 (382)
T ss_pred             ------------------------CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHH
Confidence                                    11246789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 015178          389 VIRDRLR  395 (412)
Q Consensus       389 ~l~~~~~  395 (412)
                      ++++...
T Consensus       370 al~r~~~  376 (382)
T COG3448         370 ALYRNWS  376 (382)
T ss_pred             HHHHHHH
Confidence            9998654

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.74  E-value=7.8e-18  Score=157.83  Aligned_cols=128  Identities=19%  Similarity=0.292  Sum_probs=109.1

Q ss_pred             CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhc
Q 015178          183 GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTL  262 (412)
Q Consensus       183 ~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~l  262 (412)
                      ..+..++..++.+  +|+++ ++++.+++|+.+|.++|.++++  ++.||+|++ +++|+                   +
T Consensus       164 ~~m~siPk~~V~~--~~s~~-~i~v~~d~tl~eaak~f~~~~i--~GaPVvd~d-k~vGi-------------------i  218 (294)
T COG2524         164 SKMVSIPKEKVKN--LMSKK-LITVRPDDTLREAAKLFYEKGI--RGAPVVDDD-KIVGI-------------------I  218 (294)
T ss_pred             eeeeecCcchhhh--hccCC-ceEecCCccHHHHHHHHHHcCc--cCCceecCC-ceEEE-------------------E
Confidence            3456677888886  69999 9999999999999999999999  999999976 99999                   6


Q ss_pred             CHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC
Q 015178          263 SAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS  342 (412)
Q Consensus       263 s~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~  342 (412)
                      |.+|+...+..+.            +                                            ...+.++|++
T Consensus       219 t~~dI~~aia~g~------------~--------------------------------------------~~kV~~~M~k  242 (294)
T COG2524         219 TLSDIAKAIANGN------------L--------------------------------------------DAKVSDYMRK  242 (294)
T ss_pred             EHHHHHHHHHcCC------------c--------------------------------------------cccHHHHhcc
Confidence            6777765432110            0                                            0124578999


Q ss_pred             CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       343 ~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      +++|++.|..+.+|+++|..+++.||-|+|++|+++||||++|||+.++
T Consensus       243 ~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         243 NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999876

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.68  E-value=1.9e-16  Score=148.58  Aligned_cols=120  Identities=16%  Similarity=0.210  Sum_probs=108.1

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      ..+|.++|  +++++++.+ ++|+.+|.+.+++++|.++||+|.                       ++++||+|..||.
T Consensus       171 k~~V~~~~--s~~~i~v~~-d~tl~eaak~f~~~~i~GaPVvd~-----------------------dk~vGiit~~dI~  224 (294)
T COG2524         171 KEKVKNLM--SKKLITVRP-DDTLREAAKLFYEKGIRGAPVVDD-----------------------DKIVGIITLSDIA  224 (294)
T ss_pred             cchhhhhc--cCCceEecC-CccHHHHHHHHHHcCccCCceecC-----------------------CceEEEEEHHHHH
Confidence            45688898  588999999 999999999999999999999994                       5899999999999


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      ..+++.        .++.+|+++|.++   +++++.++.+++|+++|. +|++|+.|.+.                +++.
T Consensus       225 ~aia~g--------~~~~kV~~~M~k~---vitI~eDe~i~dAir~M~~~nVGRLlV~ds----------------~gkp  277 (294)
T COG2524         225 KAIANG--------NLDAKVSDYMRKN---VITINEDEDIYDAIRLMNKNNVGRLLVTDS----------------NGKP  277 (294)
T ss_pred             HHHHcC--------CccccHHHHhccC---CceEcCchhHHHHHHHHHhcCcceEEEEcc----------------CCcE
Confidence            998863        2457899999977   999999999999999999 99999999863                3788


Q ss_pred             eeeecHHHHHHHHH
Q 015178          166 YCWLTQEDLIRYFL  179 (412)
Q Consensus       166 v~iITq~DIv~~l~  179 (412)
                      +||||.+||++.|+
T Consensus       278 vGiITrTDIL~~ia  291 (294)
T COG2524         278 VGIITRTDILTRIA  291 (294)
T ss_pred             EEEEehHHHHHHhh
Confidence            99999999999875

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.63  E-value=2.9e-15  Score=123.25  Aligned_cols=93  Identities=23%  Similarity=0.296  Sum_probs=82.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR  282 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~  282 (412)
                      ++++.+++++.+|++.|.++++  +++||+|++ |+++|+                   +|..|+.+.            
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~~~~~~Gi-------------------vt~~Dl~~~------------   49 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGI--RSAPLWDSRKQQFVGM-------------------LTITDFILI------------   49 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCC--ceEEEEeCCCCEEEEE-------------------EEHHHHhhh------------
Confidence            8899999999999999999999  999999975 899999                   556665431            


Q ss_pred             HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178          283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA  362 (412)
Q Consensus       283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~  362 (412)
                                                                               +.  +++++|++++.+++++|.+
T Consensus        50 ---------------------------------------------------------~~--~~~v~~~~~l~~a~~~m~~   70 (98)
T cd04618          50 ---------------------------------------------------------LR--LVSIHPERSLFDAALLLLK   70 (98)
T ss_pred             ---------------------------------------------------------ee--eEEeCCCCcHHHHHHHHHH
Confidence                                                                     01  6789999999999999999


Q ss_pred             cCCcEEEEEeCC-CcEEEEEehHHHHH
Q 015178          363 RRVSYVWVVEED-CTLVGIVTFTGMLR  388 (412)
Q Consensus       363 ~~ihrl~VVD~~-~~lvGIVT~~DIL~  388 (412)
                      ++++++||+|++ |+++|+||++||++
T Consensus        71 ~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          71 NKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             CCCCEeeEEECCCCCceEEeehhhhhc
Confidence            999999999987 89999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.61  E-value=9.8e-15  Score=121.77  Aligned_cols=108  Identities=21%  Similarity=0.249  Sum_probs=89.5

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.+++++.+|++.|.+.+.  +.+||+|++|+++|+                   ++..|++.....          
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~dl~~~~~~----------   51 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGA--RAVVVVDEENKVLGQ-------------------VTLSDLLEIGPN----------   51 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCC--CEEEEEcCCCCEEEE-------------------EEHHHHHhhccc----------
Confidence            7889999999999999999988  999999999999999                   566776542100          


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                    + ..                               ..++.++|..++.++.+++++.+++++|.++
T Consensus        52 --------------~-~~-------------------------------~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~   85 (111)
T cd04603          52 --------------D-YE-------------------------------TLKVCEVYIVPVPIVYCDSKVTDLLRIFRET   85 (111)
T ss_pred             --------------c-cc-------------------------------ccChhheeecCCcEECCCCcHHHHHHHHHHc
Confidence                          0 00                               0013356778889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||||++|+++|+||.+|+++
T Consensus        86 ~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          86 EPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             CCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            9999999999899999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.3e-14  Score=122.47  Aligned_cols=117  Identities=21%  Similarity=0.319  Sum_probs=90.4

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.++++  +++||+|++|+++|+                   ++.+|++.+...+. ....   
T Consensus         3 ~~~i~~~~~l~~a~~~~~~~~~--~~~pVv~~~~~~~Gi-------------------v~~~dl~~~~~~~~-~~~~---   57 (120)
T cd04641           3 IATARPDTPLIDVLDMLVERRV--SALPIVDENGKVVDV-------------------YSRFDVINLAKEGA-YNNL---   57 (120)
T ss_pred             cEEEcCCCCHHHHHHHHHHcCC--CeeeEECCCCeEEEE-------------------EeHHHHHHHHhcCc-cccc---
Confidence            7899999999999999999999  999999999999999                   66777765321100 0000   


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                          .  ..+...   +                                  ....+|..++.++.+++++.+++++|.++
T Consensus        58 ----~--~~~~~~---~----------------------------------~~~~~~~~~~~~v~~~~~l~~~~~~m~~~   94 (120)
T cd04641          58 ----D--LTVGEA---L----------------------------------ERRSQDFEGVRTCSPDDCLRTIFDLIVKA   94 (120)
T ss_pred             ----c--CCHHHH---H----------------------------------hhcccCCCCCeEEcCCCcHHHHHHHHHhc
Confidence                0  000000   0                                  01234567889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +++++||||++|+++|+||+.|+++
T Consensus        95 ~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          95 RVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CccEEEEECCCCCEEEEEEHHHhhc
Confidence            9999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.57  E-value=7.7e-15  Score=140.10  Aligned_cols=132  Identities=15%  Similarity=0.160  Sum_probs=109.9

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      +...+|+|||  ++++++++. ++++.+|.++|.+|+|+.+||.|+                      +.+++|||+.+|
T Consensus       242 ~~~LtcadIM--SrdVvtv~~-~ts~dhA~~ll~~H~ikaLPV~d~----------------------~~rl~GiVt~~d  296 (382)
T COG3448         242 MGELTCADIM--SRDVVTVST-DTSIDHARKLLQEHRIKALPVLDE----------------------HRRLVGIVTQRD  296 (382)
T ss_pred             hccccHHHhc--CccceecCC-cCChHHHHHHHHHcCccccccccc----------------------ccceeeeeeHHH
Confidence            4567899999  689999999 999999999999999999999996                      468999999999


Q ss_pred             HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178           85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND  163 (412)
Q Consensus        85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~  163 (412)
                      ++.+..- ...+.....-...|+.+|+   .++.++.++++..+++-.|. .|.|.+||++.                .|
T Consensus       297 l~~~a~~-~p~qrlr~~~~~~vk~imt---~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~----------------~g  356 (382)
T COG3448         297 LLKHARP-SPFQRLRFLRPPTVKGIMT---TPVVTVRPDTPAVELVPRLADEGLHALPVLDA----------------AG  356 (382)
T ss_pred             HhhccCc-chHHHhhccCCCccccccc---CcceeecCCCcHHHHHHHhhcCCcceeeEEcC----------------CC
Confidence            9886432 1111112222456999998   44899999999999999999 89999999864                47


Q ss_pred             CeeeeecHHHHHHHHHHc
Q 015178          164 SEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       164 ~~v~iITq~DIv~~l~~~  181 (412)
                      +++|||||+|++..++++
T Consensus       357 ~lvGIvsQtDliaal~r~  374 (382)
T COG3448         357 KLVGIVSQTDLIAALYRN  374 (382)
T ss_pred             cEEEEeeHHHHHHHHHHH
Confidence            899999999999988874

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.55  E-value=1.8e-14  Score=153.21  Aligned_cols=287  Identities=17%  Similarity=0.139  Sum_probs=175.6

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      .+|+|+|.  ++++++++ ++++.+|++.|.++++..+||+|.                      +++++|+|+..||..
T Consensus        68 ~~V~dim~--~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~----------------------~g~l~Givt~~di~~  122 (546)
T PRK14869         68 PQVRDLEI--DKPVTVSP-DTSLKEAWNLMDENNVKTLPVVDE----------------------EGKLLGLVSLSDLAR  122 (546)
T ss_pred             CcHHHhcC--CCCcEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCEEEEEEEHHHHHH
Confidence            68999994  68999999 999999999999999999999995                      368999999999999


Q ss_pred             HhhhcccCCCcccccCCchhh--------------------------------hccCC-CCceEecCCCCcHHHHHHHHh
Q 015178           88 FLCKEENLLNPESALQDPVSV--------------------------------LLPEA-SGVIRHLEPSASLLEAVDLLL  134 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~d--------------------------------vm~~~-~~~~~tV~~~~sL~~ai~lm~  134 (412)
                      ++.+.... +.-+....++.+                                ++..- ++.++.+.....+..  ..+.
T Consensus       123 ~~~~~~~~-~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~--~ai~  199 (546)
T PRK14869        123 AYMDILDP-EILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQL--AAIE  199 (546)
T ss_pred             HHHhhcch-hhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHH--HHHH
Confidence            76642110 000001111111                                11111 233454433333222  2233


Q ss_pred             cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCC-CCcEEEEeCCCcH
Q 015178          135 GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVD-DAGIFAIQYDEPA  213 (412)
Q Consensus       135 ~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~-~~~v~tv~~~~~~  213 (412)
                      .|+..++|........    ..-....+..+..|.|+.|..+....    +.  ...++++  +|+ ++ ++++++++++
T Consensus       200 ~~~~~lIlt~g~~~~~----~v~~la~~~~i~ii~t~~dt~~t~~~----l~--~~~~V~~--iM~~~~-~~~~~~~~~~  266 (546)
T PRK14869        200 AGVRLLIITGGAPVSE----DVLELAKENGVTVISTPYDTFTTARL----IN--QSIPVSY--IMTTED-LVTFSKDDYL  266 (546)
T ss_pred             cCCCEEEECCCCCCCH----HHHHHHHhCCCeEEEecccHHHHHHH----hh--cCCCHHH--hccCCC-cEEECCCCcH
Confidence            7888887764322110    00011123456679999999987654    11  1345665  688 77 9999999999


Q ss_pred             HHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhh
Q 015178          214 AFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSM  293 (412)
Q Consensus       214 ~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~  293 (412)
                      .+|.+.|.++++  +.+||||++|+++|+||..||.....+           .+. .++.....    +         ..
T Consensus       267 ~~~~~~m~~~~~--~~~PVvd~~g~lvGiit~~dl~~~~~~-----------~~i-LVD~~e~~----q---------~~  319 (546)
T PRK14869        267 EDVKEVMLKSRY--RSYPVVDEDGKVVGVISRYHLLSPVRK-----------KVI-LVDHNEKS----Q---------AV  319 (546)
T ss_pred             HHHHHHHHhcCC--CceEEEcCCCCEEEEEEHHHhhccccC-----------ceE-EEcCcccc----c---------cc
Confidence            999999999999  999999999999999665555442110           000 01100000    0         00


Q ss_pred             hHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe---CCCCcHHHHHHHHHHcCCcEEEE
Q 015178          294 VGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC---HPWSSLMAVIMQALARRVSYVWV  370 (412)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~---~~~~sl~~v~~~m~~~~ihrl~V  370 (412)
                      ..+    ..                .+.-..  -..+    ..+++++..++++   ...++..-+++.|.++++...|+
T Consensus       320 ~~~----~~----------------~~i~~i--iDHH----~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~  373 (546)
T PRK14869        320 EGI----EE----------------AEILEI--IDHH----RLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPE  373 (546)
T ss_pred             cch----hh----------------ceEEEE--ecCC----ccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHH
Confidence            000    00                000000  0000    1234566665544   33556667888889999998888


Q ss_pred             EeCCCcEEEEEehHHHHHH
Q 015178          371 VEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       371 VD~~~~lvGIVT~~DIL~~  389 (412)
                      +.. ..+.||+|.|+.++.
T Consensus       374 ia~-~ll~gIlsDT~~f~~  391 (546)
T PRK14869        374 IAG-LLLAAILSDTLLFKS  391 (546)
T ss_pred             HHH-HHHHHHHHHhcCccC
Confidence            865 479999999998754

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=8.7e-14  Score=116.42  Aligned_cols=111  Identities=20%  Similarity=0.265  Sum_probs=90.2

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      |.++.+++++.+|++.|.+++.  ..+||+|++|+++|+                   ++..|++.....          
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~g~~~G~-------------------vt~~dl~~~~~~----------   51 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGI--DLVVVCDPHGKLAGV-------------------LTKTDVVRQMGR----------   51 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCC--CEEEEECCCCCEEEE-------------------EehHHHHHHHhh----------
Confidence            7889999999999999999998  999999999999999                   556666542200          


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                      ...        .    .               ...++.++|..+++++++++++.++++.|.++
T Consensus        52 ----------------~~~--------~----~---------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~   88 (114)
T cd04619          52 ----------------CGG--------P----G---------------CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQR   88 (114)
T ss_pred             ----------------cCC--------C----c---------------ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHc
Confidence                            000        0    0               00113456778899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||++|+++
T Consensus        89 ~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          89 GLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             CCCeEEEECCCCcEEEEEEhHhhcc
Confidence            9999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=9.3e-14  Score=113.52  Aligned_cols=94  Identities=16%  Similarity=0.371  Sum_probs=83.3

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.+++++.+|++.|.++++  +.+||+|++|+++|+                   ++.+|++..             
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~-------------   48 (96)
T cd04614           3 VPTVWEETPLPVAVRIMELANV--KALPVLDDDGKLSGI-------------------ITERDLIAK-------------   48 (96)
T ss_pred             ccEeCCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEE-------------------EEHHHHhcC-------------
Confidence            7889999999999999999999  999999999999999                   556665430             


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                                                ..+.++.+++++.+++++|.++
T Consensus        49 ----------------------------------------------------------~~~~~v~~~~~l~~a~~~m~~~   70 (96)
T cd04614          49 ----------------------------------------------------------SEVVTATKRTTVSECAQKMKRN   70 (96)
T ss_pred             ----------------------------------------------------------CCcEEecCCCCHHHHHHHHHHh
Confidence                                                                      0167899999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      +++++||+|++|+++|+||++||+++
T Consensus        71 ~~~~lpVv~~~~~~~Giit~~di~~~   96 (96)
T cd04614          71 RIEQIPIINGNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             CCCeeeEECCCCcEEEEEEHHHhhcC
Confidence            99999999988899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=1.8e-13  Score=116.56  Aligned_cols=123  Identities=30%  Similarity=0.509  Sum_probs=89.8

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.++++  +++||+|++|+++|+                   ++..|++.....+..       
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~--~~i~V~d~~~~~~Gi-------------------v~~~dl~~~~~~~~~-------   54 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNI--SGLPVVDEKGKLIGN-------------------ISASDLKGLLLSPDD-------   54 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCC--CcccEECCCCcEEEE-------------------EEHHHhhhhhcCcch-------
Confidence            7889999999999999999998  999999999999999                   556666553211000       


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                         .. ........+ +.                 .+       .     ..+...|..+++++.+++++.+++++|.++
T Consensus        55 ---~~-~~~~~~~~~-~~-----------------~~-------~-----~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~  100 (126)
T cd04642          55 ---LL-LYRTITFKE-LS-----------------EK-------F-----TDSDGVKSRPLITCTPSSTLKEVITKLVAN  100 (126)
T ss_pred             ---hh-cccchhhhh-hh-----------------hh-------c-----ccccccccCCCeEECCCCcHHHHHHHHHHh
Confidence               00 000000000 00                 00       0     001234667899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +++++||||++|+++|+||.+||++
T Consensus       101 ~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642         101 KVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CCcEEEEECCCCCEEEEEEHHHHhc
Confidence            9999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=1.6e-13  Score=115.46  Aligned_cols=110  Identities=22%  Similarity=0.273  Sum_probs=88.1

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.++++  +.+||+|++|+++|+                   ++..|++.......        
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------vt~~dl~~~~~~~~--------   53 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDV--GSLFVVDEDGDLVGV-------------------VSRKDLLKASIGGA--------   53 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEE-------------------EEHHHHHHHHHcCC--------
Confidence            7889999999999999999999  999999998999999                   56667655210000        


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeCCCCcHHHHHHHHH
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCHPWSSLMAVIMQAL  361 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~~~~sl~~v~~~m~  361 (412)
                                    + .                               ....+.++|.+  ++.++++++++.+++++|.
T Consensus        54 --------------~-~-------------------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~   87 (118)
T cd04617          54 --------------D-L-------------------------------QKVPVGVIMTRMPNITTTTPEESVLEAAKKLI   87 (118)
T ss_pred             --------------C-c-------------------------------cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHH
Confidence                          0 0                               00012345653  6889999999999999999


Q ss_pred             HcCCcEEEEEeCC---CcEEEEEehHHHHH
Q 015178          362 ARRVSYVWVVEED---CTLVGIVTFTGMLR  388 (412)
Q Consensus       362 ~~~ihrl~VVD~~---~~lvGIVT~~DIL~  388 (412)
                      +++++++||||++   |+++|+||++||++
T Consensus        88 ~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          88 EHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            9999999999987   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.49  E-value=1.7e-13  Score=136.67  Aligned_cols=115  Identities=20%  Similarity=0.262  Sum_probs=94.7

Q ss_pred             CCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178          198 IVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR  275 (412)
Q Consensus       198 i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~  275 (412)
                      +|++  + ++++++++++.+|++.|.++++  +.+||+|++|+++|+                   +|.+|+++....+ 
T Consensus       207 im~~~~~-~~~v~~~~sl~~a~~~~~~~~~--~~~vVvd~~g~lvGi-------------------vt~~Dl~~~~~~~-  263 (326)
T PRK10892        207 IMHTGDE-IPHVSKTASLRDALLEITRKNL--GMTVICDDNMKIEGI-------------------FTDGDLRRVFDMG-  263 (326)
T ss_pred             HhCCCCC-CeEECCCCCHHHHHHHHHhcCC--CeEEEEcCCCcEEEE-------------------EecHHHHHHHhcC-
Confidence            6876  6 9999999999999999999988  999999999999999                   5667765422100 


Q ss_pred             CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHH
Q 015178          276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMA  355 (412)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~  355 (412)
                                                         .+                  ....++.++|+++++++.+++++.+
T Consensus       264 -----------------------------------~~------------------~~~~~v~~im~~~~~~v~~~~~l~~  290 (326)
T PRK10892        264 -----------------------------------ID------------------LRQASIADVMTPGGIRVRPGILAVD  290 (326)
T ss_pred             -----------------------------------CC------------------cccCCHHHhcCCCCEEECCCCCHHH
Confidence                                               00                  0001245788999999999999999


Q ss_pred             HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      ++++|.+++++++||+|+ |+++||||++||+++
T Consensus       291 a~~~m~~~~~~~lpVv~~-~~lvGiit~~dil~~  323 (326)
T PRK10892        291 ALNLMQSRHITSVLVADG-DHLLGVLHMHDLLRA  323 (326)
T ss_pred             HHHHHHHCCCcEEEEeeC-CEEEEEEEhHHhHhc
Confidence            999999999999999985 799999999999975

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.49  E-value=6.3e-14  Score=119.88  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=90.4

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.++++  +.+||+|++|+++|+                   ++..|++....           
T Consensus         4 ~~~v~~~~~v~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------i~~~dl~~~~~-----------   51 (124)
T cd04608           4 PVTVLPTVTCAEAIEILKEKGF--DQLPVVDESGKILGM-------------------VTLGNLLSSLS-----------   51 (124)
T ss_pred             CEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEE-------------------EEHHHHHHHHH-----------
Confidence            7889999999999999999998  999999998999999                   56677664210           


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH---
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA---  360 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m---  360 (412)
                                       ...       .                   ..+.++.++|++++++|++++++.+++++|   
T Consensus        52 -----------------~~~-------~-------------------~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~   88 (124)
T cd04608          52 -----------------SGK-------V-------------------QPSDPVSKALYKQFKRVNKNDTLGKLSRILETD   88 (124)
T ss_pred             -----------------Hhc-------c-------------------CCCCcHHHHhhccceecCCCCCHHHHHhhcccC
Confidence                             000       0                   001135678999999999999999999965   


Q ss_pred             ------HHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          361 ------LARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       361 ------~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                            .+++.+++||+|++|+++||||++||++++
T Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          89 AFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             CceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence                  344789999999889999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=3.3e-13  Score=112.59  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=90.1

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR  282 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~  282 (412)
                      +.++.+++++.+|++.|.++++  +.+||+|++ |+++|+                   ++.+|+++.+...        
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~~G~-------------------v~~~dl~~~~~~~--------   53 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGV--SSLVVEKRRESDAYGI-------------------VTMRDILKKVVAE--------   53 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCC--CEEEEEECCCCcEEEE-------------------EehHHHHHHHHhC--------
Confidence            7889999999999999999988  999999987 899999                   6777776532000        


Q ss_pred             HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178          283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA  362 (412)
Q Consensus       283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~  362 (412)
                                          .       .     .             ....++.++|..++.++++++++.+++++|.+
T Consensus        54 --------------------~-------~-----~-------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~   88 (114)
T cd04630          54 --------------------G-------R-----D-------------PDRVNVYEIMTKPLISVSPDMDIKYCARLMER   88 (114)
T ss_pred             --------------------C-------C-----C-------------CCccCHHHHhcCCCeeECCCCCHHHHHHHHHH
Confidence                                0       0     0             00011345677789999999999999999999


Q ss_pred             cCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          363 RRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       363 ~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      ++.+++||+|+ |+++|+||+.||+++
T Consensus        89 ~~~~~~~Vvd~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          89 TNIRRAPVVEN-NELIGIISLTDIFLA  114 (114)
T ss_pred             cCCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence            99999999998 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.49  E-value=3.4e-13  Score=113.77  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=92.8

Q ss_pred             CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178          201 DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL  280 (412)
Q Consensus       201 ~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~  280 (412)
                      ++ +.++.++.++.++++.|.+++.  +.+||+|++|+++|+                   ++.+|++.+......    
T Consensus         2 ~~-~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~Gi-------------------v~~~~l~~~~~~~~~----   55 (124)
T cd04600           2 RD-VVTVTPDTSLEEAWALLRRHRI--KALPVVDGDRRLVGI-------------------VTQRDLLRHARPDGR----   55 (124)
T ss_pred             CC-cEEeCCCCCHHHHHHHHHHcCC--ceeeEECCCCCEEEE-------------------EEHHHHHhhhccccc----
Confidence            34 8889999999999999999988  999999988999999                   556666543211000    


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178          281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA  360 (412)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m  360 (412)
                                   ......+..             .              .....+.++|..+++++.+++++.+++++|
T Consensus        56 -------------~~~~~~~~~-------------~--------------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~   95 (124)
T cd04600          56 -------------RPLRGRLRG-------------R--------------DKPETVGDIMSPPVVTVRPDTPIAELVPLL   95 (124)
T ss_pred             -------------chhhhhhhc-------------c--------------cccccHHHhccCCCeeeCCCCcHHHHHHHH
Confidence                         000000000             0              001123457788999999999999999999


Q ss_pred             HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      .+++.+++||+|++|+++|+||..|++++
T Consensus        96 ~~~~~~~~~Vv~~~g~~~Gvit~~di~~~  124 (124)
T cd04600          96 ADGGHHHVPVVDEDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             HhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence            99999999999988999999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.45  E-value=8.6e-13  Score=110.12  Aligned_cols=111  Identities=19%  Similarity=0.247  Sum_probs=89.8

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.+.+.  +.+||+|++|+++|+                   ++..|++......         
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~dl~~~~~~~---------   52 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKH--GSALVVDRDGGVVGI-------------------ITLPDLLRALEAD---------   52 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCC--cEEEEEcCCCCEEEE-------------------EEHHHHHHHHhcc---------
Confidence            6788999999999999999988  999999999999999                   6677776532100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                         ..           ..               ...+.++|..++++|.+++++.+++++|.++
T Consensus        53 -------------------~~-----------~~---------------~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~   87 (115)
T cd04593          53 -------------------EA-----------GE---------------PSAVDEVATPPLLTVHPDEPLAHALDRMASR   87 (115)
T ss_pred             -------------------cc-----------cc---------------cccHHHhccCCceEECCCCCHHHHHHHHHHc
Confidence                               00           00               0012345677899999999999999999999


Q ss_pred             CCcEEEEEeCC--CcEEEEEehHHHHHH
Q 015178          364 RVSYVWVVEED--CTLVGIVTFTGMLRV  389 (412)
Q Consensus       364 ~ihrl~VVD~~--~~lvGIVT~~DIL~~  389 (412)
                      +.+++||+|++  |+++|+||++||+++
T Consensus        88 ~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          88 GLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             CCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence            99999999987  799999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.45  E-value=6.4e-13  Score=132.03  Aligned_cols=121  Identities=14%  Similarity=0.214  Sum_probs=98.1

Q ss_pred             CCcccccCCCCC-cEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178          191 QPINSLNIVDDA-GIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA  269 (412)
Q Consensus       191 ~~i~~L~i~~~~-~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~  269 (412)
                      .+|++  +|.++ ++.++++++++.+|++.|.+++.  +.+||+|++|+++|+                   ++..|+++
T Consensus       197 ~~V~~--im~~~~~~~~v~~~~sv~~a~~~~~~~~~--~~~~Vvd~~g~~iG~-------------------vt~~dl~~  253 (321)
T PRK11543        197 NKVHH--LMRRDDAIPQVALTASVMDAMLELSRTGL--GLVAVCDAQQQVQGV-------------------FTDGDLRR  253 (321)
T ss_pred             hHHHH--HhccCCCCcEeCCCCCHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------ecHHHHHH
Confidence            34444  56654 38899999999999999999988  999999999999999                   66777765


Q ss_pred             hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178          270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP  349 (412)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~  349 (412)
                      .+..+.                                         .              ....+.++|+++++++.+
T Consensus       254 ~~~~~~-----------------------------------------~--------------~~~~v~~im~~~~~~v~~  278 (321)
T PRK11543        254 WLVGGG-----------------------------------------A--------------LTTPVNEAMTRGGTTLQA  278 (321)
T ss_pred             HHhCCC-----------------------------------------C--------------cCCcHHHhcCCCCEEECC
Confidence            321000                                         0              001245678889999999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      ++++.+++++|.++++.++||||++|+++|+||+.||+++
T Consensus       279 ~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        279 QSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            9999999999999999999999988999999999999875

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.45  E-value=3.1e-13  Score=139.02  Aligned_cols=117  Identities=21%  Similarity=0.300  Sum_probs=99.6

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      .++.+ .+++++.+++.+|.+.|.++|+  +++.++|++|++.||                   +|.+|+++.+      
T Consensus       154 ~~~~~-~~~v~~~~~i~~aa~km~~~gv--~s~v~l~~~~~~~GI-------------------vT~~dl~~~v------  205 (610)
T COG2905         154 VKTLP-AVTVSPQASIQDAARKMKDEGV--SSLVVLDDSGPLLGI-------------------VTRKDLRSRV------  205 (610)
T ss_pred             HhcCC-CcccCccCcHHHHHHHHHhcCC--CeEEEEcCCCCccce-------------------eehHHHHHHH------
Confidence            46677 9999999999999999999999  999999999999999                   6677776643      


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                            +..+                          ++...+|.++|+.|++++.+++-+-+|+
T Consensus       206 ----------------------~~~g--------------------------~~~~~~V~evmT~p~~svd~~~~~feAm  237 (610)
T COG2905         206 ----------------------IADG--------------------------RSKTQKVSEVMTSPVISVDRGDFLFEAM  237 (610)
T ss_pred             ----------------------HhcC--------------------------CCcccchhhhhccCceeecCcchHHHHH
Confidence                                  1100                          0011236789999999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      -.|.+++||||||+++ |+++||||.+|||+.+.
T Consensus       238 l~m~r~~I~hl~V~e~-gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         238 LMMLRNRIKHLPVTED-GQPLGILTLTDILRLFS  270 (610)
T ss_pred             HHHHHhCCceeeeecC-CeeeEEeeHHHHHHhhC
Confidence            9999999999999986 89999999999999886

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.45  E-value=1.2e-12  Score=108.92  Aligned_cols=109  Identities=22%  Similarity=0.273  Sum_probs=88.3

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      .+++.+++++.+|++.|.+++.  +.++|+|++|+++|+                   ++.+|++.....          
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~dl~~~~~~----------   52 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNAL--RIVLVVDENGRLLGT-------------------VTDGDIRRALLK----------   52 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCc--CEEEEECCCCCEEEE-------------------EEcHHHHHHHhc----------
Confidence            6778999999999999999988  999999999999999                   566666542100          


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                        ..            ..               ...+.++|..++.++.+++++.+++++|.++
T Consensus        53 ------------------~~------------~~---------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~   87 (113)
T cd04607          53 ------------------GL------------SL---------------DDPVSEVMNRNPITAKVGSSREEILALMRER   87 (113)
T ss_pred             ------------------CC------------Cc---------------CCCHHHhhcCCCEEEcCCCCHHHHHHHHHHC
Confidence                              00            00               0012346777889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||||++|+++|+||.+||+.
T Consensus        88 ~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          88 SIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCEEEEECCCCCEEEEEEhHHhcc
Confidence            9999999998899999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.6e-12  Score=110.12  Aligned_cols=117  Identities=19%  Similarity=0.215  Sum_probs=87.3

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR  282 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~  282 (412)
                      +.++.+++++.+|++.|.++++  +.+||+|++ |+++|+                   ++..|++++...+        
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~~Gi-------------------v~~~dl~~~~~~~--------   53 (123)
T cd04627           3 FIPVPSTASLFQAIEILGSGGI--HRVAVTEEESGEVIGI-------------------LSQRRLVEFLWEN--------   53 (123)
T ss_pred             ceecCCCCCHHHHHHHHhhCCc--ceEEEEeCCCCcEEEE-------------------EEHHHHHHHHHHh--------
Confidence            7889999999999999999988  999999997 999999                   5566665532100        


Q ss_pred             HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178          283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA  362 (412)
Q Consensus       283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~  362 (412)
                          ..........    ...                             ......+|..++.++++++++.+++++|.+
T Consensus        54 ----~~~~~~~~~~----~~~-----------------------------~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~   96 (123)
T cd04627          54 ----ARSFPGLDPL----YPI-----------------------------PLRDLTIGTSDVISINGDQPLIDALHLMHN   96 (123)
T ss_pred             ----HHhccchhhh----hhh-----------------------------hhhhcccCcCCceEeCCCCCHHHHHHHHHH
Confidence                0000000000    000                             000123467889999999999999999999


Q ss_pred             cCCcEEEEEeCCCcEEEEEehHHH
Q 015178          363 RRVSYVWVVEEDCTLVGIVTFTGM  386 (412)
Q Consensus       363 ~~ihrl~VVD~~~~lvGIVT~~DI  386 (412)
                      ++++++||+|++|+++|+||.+||
T Consensus        97 ~~~~~lpVvd~~~~~vGiit~~di  120 (123)
T cd04627          97 EGISSVAVVDNQGNLIGNISVTDV  120 (123)
T ss_pred             cCCceEEEECCCCcEEEEEeHHHh
Confidence            999999999998999999999997

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.44  E-value=5.9e-13  Score=116.93  Aligned_cols=121  Identities=17%  Similarity=0.251  Sum_probs=98.5

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      .++..||  ..++|++.+ ++++.+|+++|.++||+-+||.+.                       +++||-||+.||++
T Consensus        65 ita~~iM--~spvv~v~p-dDsi~~vv~lM~~~g~SQlPVi~~-----------------------~k~VGsItE~~iv~  118 (187)
T COG3620          65 ITAKTIM--HSPVVSVSP-DDSISDVVNLMRDKGISQLPVIEE-----------------------DKVVGSITENDIVR  118 (187)
T ss_pred             EeHhhhc--cCCeeEECc-hhhHHHHHHHHHHcCCccCceeeC-----------------------CeeeeeecHHHHHH
Confidence            4678888  478999999 999999999999999999999994                       68999999999999


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC  167 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~  167 (412)
                      .+.+..     +..-...|+++|+..   |.+|+++++|.. +..+..+..-++|+                 ++|+.+|
T Consensus       119 ~~le~~-----e~i~~~~vr~vM~e~---fP~Vs~~~~l~v-I~~LL~~~~AVlV~-----------------e~G~~vG  172 (187)
T COG3620         119 ALLEGM-----ESIRSLRVREVMGEP---FPTVSPDESLNV-ISQLLEEHPAVLVV-----------------ENGKVVG  172 (187)
T ss_pred             HHhccc-----cchhhhhHHHHhcCC---CCcCCCCCCHHH-HHHHHhhCCeEEEE-----------------eCCceEE
Confidence            988742     122346699999855   999999999854 44444444556665                 3478999


Q ss_pred             eecHHHHHHHHHH
Q 015178          168 WLTQEDLIRYFLN  180 (412)
Q Consensus       168 iITq~DIv~~l~~  180 (412)
                      |||+.||++++.+
T Consensus       173 IITk~DI~k~~~~  185 (187)
T COG3620         173 IITKADIMKLLAG  185 (187)
T ss_pred             EEeHHHHHHHHhc
Confidence            9999999999864

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.43  E-value=9.9e-13  Score=137.22  Aligned_cols=113  Identities=28%  Similarity=0.288  Sum_probs=96.8

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|.++ ++++.+++++.+|+++|.++++  +++||+|++|+++|+                   ++.+|+... +.    
T Consensus        94 iMi~~-pvtv~~d~tv~eA~~~m~~~~~--s~l~VVD~~gklvGI-------------------VT~rDL~~~-~~----  146 (479)
T PRK07807         94 LVFDT-PVTLSPDDTVGDALALLPKRAH--GAVVVVDEEGRPVGV-------------------VTEADCAGV-DR----  146 (479)
T ss_pred             ccccC-CeEECCCCCHHHHHHHHHhcCC--ceEEEECCCCeEEEE-------------------EeHHHHhcC-cc----
Confidence            57778 9999999999999999999999  999999999999999                   556665331 00    


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                                                             ..++.++|+.+++++++++++.+++
T Consensus       147 -------------------------------------------------------~~~V~diMt~~~itV~~d~sL~eAl  171 (479)
T PRK07807        147 -------------------------------------------------------FTQVRDVMSTDLVTLPAGTDPREAF  171 (479)
T ss_pred             -------------------------------------------------------CCCHHHhccCCceEECCCCcHHHHH
Confidence                                                                   0012356888999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ++|.+++++++||||++|+++|+||++||+++...
T Consensus       172 ~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~  206 (479)
T PRK07807        172 DLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY  206 (479)
T ss_pred             HHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            99999999999999988999999999999997654

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.1e-12  Score=107.83  Aligned_cols=96  Identities=22%  Similarity=0.372  Sum_probs=83.2

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      .++++++ ++|+.+|++.|.++++.++||+|++                     +++++|++|..|+.+.+.        
T Consensus         2 ~~~~v~~-~~~l~~a~~~~~~~~~~~~~Vvd~~---------------------~~~~~Givt~~Dl~~~~~--------   51 (98)
T cd04618           2 KLVVFDT-KLPVKKAFNALVENGIRSAPLWDSR---------------------KQQFVGMLTITDFILILR--------   51 (98)
T ss_pred             eEEEECC-CCcHHHHHHHHHHcCCceEEEEeCC---------------------CCEEEEEEEHHHHhhhee--------
Confidence            4789999 9999999999999999999999953                     258999999999987531        


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                                        +.++.++++|.+|++.|. ++++++||++++               +++.+|+||++|++++
T Consensus        52 ------------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------~~~~~giit~~d~~~~   98 (98)
T cd04618          52 ------------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS---------------TGTGLYILTSRRILKF   98 (98)
T ss_pred             ------------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC---------------CCCceEEeehhhhhcC
Confidence                              468999999999999999 999999998632               2578999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.6e-12  Score=112.98  Aligned_cols=132  Identities=20%  Similarity=0.226  Sum_probs=92.2

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++++++++.+|++.|.++++  +++||+|++|+++|+                   ++..|++.+..... ...... 
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~--~~l~V~d~~~~~~Gi-------------------v~~~dl~~~~~~~~-~~~~~~-   59 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGV--GRVIVVDDNGKPVGV-------------------ITYRDLAFAEFEDN-ERGLPK-   59 (135)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCC--CcceEECCCCCEEEE-------------------EeHHHHHHHhhccc-ccccch-
Confidence            7889999999999999999988  999999999999999                   45555554321000 000000 


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                       +.+.           |....      .    ...+       +.....+.++.++|..++.++.+++++.++++.|.++
T Consensus        60 -~~~~-----------~~~~~------~----~~~~-------~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~  110 (135)
T cd04621          60 -KSIK-----------MKRKA------G----QKRY-------RYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEA  110 (135)
T ss_pred             -hhhh-----------hhhhc------c----cccc-------cccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHc
Confidence             0000           00000      0    0000       0001112245678888999999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ |+++|+||++||++
T Consensus       111 ~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621         111 NISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             CCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            9999999998 89999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.7e-12  Score=107.52  Aligned_cols=108  Identities=14%  Similarity=0.191  Sum_probs=87.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.+++++.++.+|++.|.++++  +.+||+|++|+++|+                   ++..|++.+....         
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~dl~~~~~~~---------   52 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNT--NEIIVKDNEEKLKGV-------------------VTFTDILDLDLFE---------   52 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCC--CeEEEEcCCCCEEEE-------------------EehHHhHHHHhhc---------
Confidence            7789999999999999999988  999999998999999                   5666665431000         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                         .        .   .                                ..++.++|.+++.++.+++++.++++.|.++
T Consensus        53 ---~--------~---~--------------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~   86 (111)
T cd04626          53 ---S--------F---L--------------------------------EKKVFNIVSQDVFYVNEEDTIDEALDIMREK   86 (111)
T ss_pred             ---c--------c---c--------------------------------cCcHHHHhcCCcEEEcCCCcHHHHHHHHHHc
Confidence               0        0   0                                0012345677889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ |+++|+||+.||+.
T Consensus        87 ~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          87 QIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             CCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            9999999998 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.42  E-value=2.8e-12  Score=105.80  Aligned_cols=106  Identities=22%  Similarity=0.298  Sum_probs=88.4

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.++.++.+|++.|.+++.  +.+||+|++|+++|+                   ++..|++.....+         
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~~l~~~~~~~---------   53 (110)
T cd04605           4 VVTISEDASIKEAAKLMIEENI--NHLPVVDEDGRLVGI-------------------VTSWDISKAVARD---------   53 (110)
T ss_pred             CEEECCCCCHHHHHHHHHhCCC--ceEEEECCCCcEEEE-------------------EeHHHHHHHHhhC---------
Confidence            7889999999999999999988  999999999999999                   6677775422100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                               .                                        ..+.++|..++.++.+++++.++++.|.++
T Consensus        54 ---------~----------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   84 (110)
T cd04605          54 ---------K----------------------------------------KSVEDIMTRNVITATPDEPIDVAARKMERH   84 (110)
T ss_pred             ---------c----------------------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHh
Confidence                     0                                        001234567889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||+.||++
T Consensus        85 ~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          85 NISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             CCCEEeEECCCCcEEEEEEHHHhhh
Confidence            9999999999899999999999965

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.42  E-value=1e-12  Score=109.50  Aligned_cols=108  Identities=20%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             EEEEeCCCcHHHHHHHHHhcC-CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSH-INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR  282 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~  282 (412)
                      +.++++++++.+|++.|.+++ .  +.+||+|++|+++|+                   ++..|++.....         
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~dl~~~~~~---------   52 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQ--RRFVVVDNEGRYVGI-------------------ISLADLRAIPTS---------   52 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCc--eeEEEEcCCCcEEEE-------------------EEHHHHHHHHHh---------
Confidence            788999999999999997775 7  999999998999999                   567776652100         


Q ss_pred             HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc--CCceEeCCCCcHHHHHHHH
Q 015178          283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR--SEAILCHPWSSLMAVIMQA  360 (412)
Q Consensus       283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~--~~vvt~~~~~sl~~v~~~m  360 (412)
                                     . ..                               ..++.++|.  .+++++.+++++.++++.|
T Consensus        53 ---------------~-~~-------------------------------~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~   85 (114)
T cd04801          53 ---------------Q-WA-------------------------------QTTVIQVMTPAAKLVTVLSEESLAEVLKLL   85 (114)
T ss_pred             ---------------h-cc-------------------------------ccchhhhhcccccceEECCCCcHHHHHHHH
Confidence                           0 00                               000122343  2367999999999999999


Q ss_pred             HHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          361 LARRVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      .+++.+++||+|++|+++||||..||++
T Consensus        86 ~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          86 EEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            9999999999998889999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.42  E-value=2.9e-12  Score=105.08  Aligned_cols=103  Identities=19%  Similarity=0.250  Sum_probs=86.2

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.+++++.++.+|++.|.+.+.  +.+||+|++|+++|+                   ++..|++....           
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~--~~~~v~d~~g~~~Gi-------------------v~~~dl~~~~~-----------   50 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDSDL--RALTVVDADGQPLGF-------------------VTRREAARASG-----------   50 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhcCC--CEEEEECCCCCEEEE-------------------EeHHHHHHhcc-----------
Confidence            6789999999999999999988  999999988999999                   56666654110           


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                    .                                    ++.++|...+.++.+++++.+++++|.++
T Consensus        51 --------------~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (106)
T cd04582          51 --------------G------------------------------------CCGDHAEPFKVTVSVDDDLRIVLSRMFAH   80 (106)
T ss_pred             --------------c------------------------------------chhhhcccCCEEECCCCCHHHHHHHHHHC
Confidence                          0                                    01123556678899999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +++++||+|++|+++|+||+.|+++
T Consensus        81 ~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          81 DMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             CCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.42  E-value=2e-12  Score=106.79  Aligned_cols=104  Identities=17%  Similarity=0.218  Sum_probs=87.2

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.+++.  +.+||+|++|+++|+                   ++..|++....     +     
T Consensus         4 ~~~~~~~~~~~~a~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~~l~~~~~-----~-----   52 (108)
T cd04596           4 TGYLTTTDTVKDWHELNKETGH--SRFPVVDEKNKVVGI-------------------VTSKDVAGKDP-----D-----   52 (108)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCC--CceeEECCCCeEEEE-------------------ecHHHHhcccc-----c-----
Confidence            7889999999999999999988  999999999999999                   55666543100     0     


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                                        .++.++|..++.++.+++++.+++++|.++
T Consensus        53 --------------------------------------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~   82 (108)
T cd04596          53 --------------------------------------------------TTIEKVMTKNPITVNPKTSVASVAHMMIWE   82 (108)
T ss_pred             --------------------------------------------------ccHHHHhcCCCeEECCCCCHHHHHHHHHHc
Confidence                                                              001234556788999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||+.|+++
T Consensus        83 ~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          83 GIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             CCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            9999999998899999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=2e-12  Score=107.58  Aligned_cols=114  Identities=16%  Similarity=0.274  Sum_probs=88.1

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++++++++.+|++.|.++++  +.+||+|++|+++|+                   ++.+|++++.... ...     
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~~~~~-~~~-----   55 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKHGY--SAIPVLDKEGKYVGT-------------------ISLTDILWKLKGL-ENL-----   55 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHCCC--ceeeeECCCCcEEEE-------------------EeHHHHHHHhhcc-Cch-----
Confidence            8899999999999999999998  999999998999999                   6677776543100 000     


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                 .. ..+.                               ..++.++|..++.++.+++++.++++.|.++
T Consensus        56 -----------~~-~~~~-------------------------------~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~   92 (116)
T cd04643          56 -----------DL-ERLV-------------------------------DLKVIDVMNTDVPVIIDDADIEEILHLLIDQ   92 (116)
T ss_pred             -----------hH-HHHh-------------------------------CCcHHHHhcCCCceecCCCCHHHHHHHHhcC
Confidence                       00 0000                               0012346777899999999999999999886


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      +  .+||+|++|+++|+||..|++++
T Consensus        93 ~--~~~Vv~~~~~~~Gvit~~dil~~  116 (116)
T cd04643          93 P--FLPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             C--ceeEEeCCCeEEEEEEHHHhhcC
Confidence            5  59999998999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=1.4e-12  Score=111.11  Aligned_cols=116  Identities=18%  Similarity=0.202  Sum_probs=84.6

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.++++  ..+||+|++|+++|+                   ++..|++....           
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~~~-----------   50 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGV--RLLLVVDSDDNFIGV-------------------ITAVDLLGEEP-----------   50 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHcCC--cEEEEEcCCCcEEEE-------------------EEHHHHhhChh-----------
Confidence            7789999999999999999988  999999988999999                   55666654100           


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe------CCCCcHHHHH
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC------HPWSSLMAVI  357 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~------~~~~sl~~v~  357 (412)
                          +     ...   ....             .  .          +...++.++|+++.+++      .+++++.+++
T Consensus        51 ----~-----~~~---~~~~-------------~--~----------~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l   93 (126)
T cd04640          51 ----I-----KRI---QEGG-------------I--S----------RSELTVADVMTPKEDLKALDLEELENASVGDVV   93 (126)
T ss_pred             ----h-----HHH---HHcC-------------C--C----------chheEHHHhcCchhhhccccHHHhccCcHHHHH
Confidence                0     000   0000             0  0          00011345666554333      3688999999


Q ss_pred             HHHHHcCCcEEEEEeCC-CcEEEEEehHHHHH
Q 015178          358 MQALARRVSYVWVVEED-CTLVGIVTFTGMLR  388 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~-~~lvGIVT~~DIL~  388 (412)
                      ++|.+++.+++||||++ |+++|+||++||++
T Consensus        94 ~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          94 ETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            99999999999999987 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=3.4e-12  Score=105.33  Aligned_cols=110  Identities=25%  Similarity=0.348  Sum_probs=89.0

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +++++++.++.+|++.|.+++.  +.+||+|++++++|+                   ++..|++..+...         
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~Gi-------------------v~~~~l~~~~~~~---------   52 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEKNI--GAVVVVDDGGRLVGI-------------------FSERDIVRKVALR---------   52 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEE-------------------EehHHHHHHHhhc---------
Confidence            7889999999999999999988  999999988999999                   5677766532100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                       ..             ..              ....+.++|..++.++.+++++.++++.|.++
T Consensus        53 -----------------~~-------------~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~   88 (113)
T cd04623          53 -----------------GA-------------SA--------------LDTPVSEIMTRNVITVTPDDTVDEAMALMTER   88 (113)
T ss_pred             -----------------CC-------------Cc--------------cccCHHHhcCCCcEEECCCCcHHHHHHHHHHc
Confidence                             00             00              00113456777899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ |+++|+||..||++
T Consensus        89 ~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          89 RFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             CCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            9999999998 89999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.41  E-value=1.5e-12  Score=112.21  Aligned_cols=132  Identities=28%  Similarity=0.371  Sum_probs=90.5

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.++.++.+|++.|.+++.  ..+||+|++|+++|+|                   +..|++.+...... +.    
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~Vvd~~~~~~Gvi-------------------~~~dl~~~~~~~~~-~~----   57 (135)
T cd04586           4 VVTVSPETSVAEAARLMLDNHI--SGLPVVDDDGRLVGIV-------------------SEGDLLRRAELGTE-RR----   57 (135)
T ss_pred             CEEeCCCCCHHHHHHHHHHcCC--CCceEECCCCCEEEEe-------------------eHHHHHHHhcccCc-ch----
Confidence            8889999999999999999988  9999999989999995                   45555443211000 00    


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                      ...++   .+....+....                        .+.+.....+.++|..+++++.+++++.+++..|.++
T Consensus        58 ~~~~~---~~~~~~~~~~~------------------------~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~  110 (135)
T cd04586          58 RARWL---DLLAGAEELAA------------------------AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEH  110 (135)
T ss_pred             hhhHH---HHhcchHHHHH------------------------HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHc
Confidence            00010   00000000000                        0000001124567778899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      +.+++||+| +|+++||||+.|++++
T Consensus       111 ~~~~l~Vvd-~g~~~Gvit~~di~~~  135 (135)
T cd04586         111 RIKRVPVVR-GGRLVGIVSRADLLRA  135 (135)
T ss_pred             CCCccCEec-CCEEEEEEEhHhhhcC
Confidence            999999999 7999999999999863

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.40  E-value=3.9e-12  Score=104.49  Aligned_cols=105  Identities=29%  Similarity=0.344  Sum_probs=87.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.++.++.+|++.|.++++  ..+||+|++|+++|+                   ++..|++.....+         
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~dl~~~~~~~---------   53 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDKKV--DSLLVVDKDNKLLGI-------------------VSLESLEQAYKEA---------   53 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHCCC--ceEEEEcCCCcEEEE-------------------EEHHHHHHHhhcC---------
Confidence            7789999999999999999988  999999998999999                   6677765421000         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                                        .++.++|...+.++.+++++.++++.|.++
T Consensus        54 --------------------------------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   83 (109)
T cd04583          54 --------------------------------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKR   83 (109)
T ss_pred             --------------------------------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHc
Confidence                                                              001234567788999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||.+|+++
T Consensus        84 ~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          84 GPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             CCceeeEECCCCeEEEEEehHHhhc
Confidence            9999999999899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=2.1e-12  Score=109.03  Aligned_cols=122  Identities=25%  Similarity=0.379  Sum_probs=91.6

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR  282 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~  282 (412)
                      +.++.++.++.+|+++|.+.+.  ..+||+|++ |+++|+                   ++..|++.++......+.   
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~i~V~d~~~~~~~G~-------------------v~~~dl~~~~~~~~~~~~---   58 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRNGF--RRLPVVDEGTGKLVGI-------------------ITATDILKYLGGGEKFNK---   58 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCc--ccceeEeCCCCEEEEE-------------------EEHHHHHHHhhccchhcc---
Confidence            7889999999999999999988  999999987 999999                   567777654321100000   


Q ss_pred             HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178          283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA  362 (412)
Q Consensus       283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~  362 (412)
                           .   ....                            +.    .....++.++|..++++|.+++++.++++.|.+
T Consensus        59 -----~---~~~~----------------------------~~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~   98 (125)
T cd04631          59 -----I---KTGN----------------------------GL----EAINEPVRSIMTRNVITITPDDSIKDAAELMLE   98 (125)
T ss_pred             -----c---cccc----------------------------cc----hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHH
Confidence                 0   0000                            00    000112345677889999999999999999999


Q ss_pred             cCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          363 RRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       363 ~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      ++.+++||+|++|+++|+||..||+++
T Consensus        99 ~~~~~~~V~~~~~~~~Gvit~~di~~~  125 (125)
T cd04631          99 KRVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             cCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence            999999999987899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.2e-12  Score=107.44  Aligned_cols=119  Identities=24%  Similarity=0.349  Sum_probs=91.1

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.+.++  +.+||+|++|+++|+                   ++..|++.+.......+     
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~G~-------------------v~~~~l~~~~~~~~~~~-----   56 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRI--RHLPVVNEDGKLVGL-------------------LTQRDLLRAALSSLSDN-----   56 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCc--ccccEECCCCCEEEE-------------------EEHHHHHHHhccccccc-----
Confidence            7889999999999999999999  999999998999999                   56677665321000000     


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                               ..   +                            ...+.....+.++|..+++++.+++++.++++.|.++
T Consensus        57 ---------~~---~----------------------------~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (122)
T cd04803          57 ---------GE---E----------------------------SLTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVEN   96 (122)
T ss_pred             ---------cc---c----------------------------ccccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHc
Confidence                     00   0                            0000001123456778899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||..|+++
T Consensus        97 ~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          97 KIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            9999999999889999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.7e-12  Score=105.66  Aligned_cols=110  Identities=23%  Similarity=0.237  Sum_probs=88.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.++++  +.+||+|++|+++|+                   ++..|+++....+         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~vvd~~~~~~G~-------------------v~~~dl~~~~~~~---------   52 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGS--RALPVVDDKKRLVGI-------------------ITRYDVLSYALES---------   52 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCC--ceEeEEcCCCCEEEE-------------------EEHHHHHHhhhhh---------
Confidence            6778999999999999999988  999999998999999                   5667765421000         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                    +.+.                               ..++.++|..++.++.+++++.++++.|.++
T Consensus        53 --------------~~~~-------------------------------~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~   87 (113)
T cd04615          53 --------------EELK-------------------------------DAKVREVMNSPVITIDANDSIAKARWLMSNN   87 (113)
T ss_pred             --------------hhhc-------------------------------CCcHHHhccCCceEECCCCcHHHHHHHHHHc
Confidence                          0000                               0012346777899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||..||++
T Consensus        88 ~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          88 NISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             CCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999999899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=5.1e-12  Score=104.59  Aligned_cols=109  Identities=17%  Similarity=0.316  Sum_probs=89.4

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.+++++.++.+|++.|.+.+.  +.+||+|++|+++|+                   ++..|++..+..+         
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~~l~~~~~~~---------   52 (112)
T cd04624           3 VVTVDPDTSIREAAKLMAEENV--GSVVVVDPDERPIGI-------------------VTERDIVRAVAAG---------   52 (112)
T ss_pred             CeEECCCCcHHHHHHHHHHcCC--CEEEEECCCCCEEEE-------------------eeHHHHHHHHhcc---------
Confidence            6789999999999999999988  999999998999999                   6677776532100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                      ..                              ...++.++|..++.++.+++++.+++++|.++
T Consensus        53 ----------------~~------------------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   86 (112)
T cd04624          53 ----------------ID------------------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKN   86 (112)
T ss_pred             ----------------CC------------------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHc
Confidence                            00                              00012345677899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +++.+||+|++|+++|+||..|+++
T Consensus        87 ~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          87 NIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             CccEEEEEcCCCcEEEEEEHHHhcc
Confidence            9999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.39  E-value=3.2e-12  Score=105.84  Aligned_cols=110  Identities=21%  Similarity=0.289  Sum_probs=89.4

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++++++++.++++.|.+.+.  +.+||+|++|+++|+                   ++..+++.++...         
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~~i~~~~~~~---------   53 (114)
T cd04604           4 LPLVSPDTSLKDALLEMSRKGL--GMTAVVDEDGRLVGI-------------------FTDGDLRRALEKG---------   53 (114)
T ss_pred             ccccCCCCcHHHHHHHHHhcCc--cEEEEEcCCCCEEEE-------------------echHHHHHHHhcc---------
Confidence            6778999999999999988887  999999998999999                   6667766532100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                      ..                             +...++.++|..++.++.+++++.+++++|.++
T Consensus        54 ----------------~~-----------------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   88 (114)
T cd04604          54 ----------------LD-----------------------------ILTLPVADVMTRNPKTIDPDALAAEALELMEEN   88 (114)
T ss_pred             ----------------Cc-----------------------------cccCCHHHhhccCCeEECCCCcHHHHHHHHHHc
Confidence                            00                             000113456777889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||..||++
T Consensus        89 ~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          89 KITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             CCCEEEEECCCCCEEEEEEHHHhhc
Confidence            9999999998899999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=2.6e-12  Score=107.99  Aligned_cols=120  Identities=20%  Similarity=0.262  Sum_probs=89.3

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++++++++.+|++.|.+.+.  +.+||+|++|+++|+++                   ..|++.........+..   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~-------------------~~~l~~~~~~~~~~~~~---   58 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLESGF--TGLPVVQKAGELIGIIT-------------------RRDIIRAGSVRTSVEDQ---   58 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCC--CcccEECCCCcEEEEEE-------------------cHHHHhhccccccccch---
Confidence            7889999999999999999988  99999999899999955                   44444310000000000   


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                         ..           ..                            .....++.++|.++++++.+++++.++++.|.++
T Consensus        59 ---~~-----------~~----------------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   96 (122)
T cd04635          59 ---QR-----------TQ----------------------------TKASPTVEKIMSTPVYSVTPDDSIATAVELMLEH   96 (122)
T ss_pred             ---hh-----------hh----------------------------hhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHc
Confidence               00           00                            0000113456778899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      +.+++||+|++|+++|+||..|++++
T Consensus        97 ~~~~~~Vvd~~g~~~Gvit~~dl~~~  122 (122)
T cd04635          97 DIGRLPVVNEKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             CCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence            99999999998999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.39  E-value=6.5e-12  Score=103.81  Aligned_cols=107  Identities=21%  Similarity=0.290  Sum_probs=87.4

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR  282 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~  282 (412)
                      ++++.++.++.+|++.|.++++  +.+||+|++ |+++|+                   ++..|++.+.....       
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~--~~~~v~~~~~~~~~G~-------------------v~~~~l~~~~~~~~-------   54 (111)
T cd04590           3 IVALDADDTLEEILELIAESGH--SRFPVYDGDLDNIIGV-------------------VHVKDLLRALAEGE-------   54 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCC--ceEEEECCCCceEEEE-------------------EEHHHHHHHHHcCC-------
Confidence            8899999999999999999988  999999998 999999                   66777765321000       


Q ss_pred             HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178          283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA  362 (412)
Q Consensus       283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~  362 (412)
                                 .                                .      .++.+++ .++.++.+++++.++++.|.+
T Consensus        55 -----------~--------------------------------~------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~   84 (111)
T cd04590          55 -----------E--------------------------------D------LDLRDLL-RPPLFVPESTPLDDLLEEMRK   84 (111)
T ss_pred             -----------C--------------------------------c------CCHHHHh-cCCeecCCCCcHHHHHHHHHh
Confidence                       0                                0      0011233 467899999999999999999


Q ss_pred             cCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          363 RRVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       363 ~~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      ++.+++||+|++|+++|+||++|+++
T Consensus        85 ~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          85 ERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             cCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            99999999999899999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=2.7e-12  Score=106.51  Aligned_cols=112  Identities=23%  Similarity=0.263  Sum_probs=88.8

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.++.++.+|++.|.+.+.  +.+||+|++|+++|+                   ++..|+++.+...         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~G~-------------------v~~~~l~~~~~~~---------   52 (114)
T cd04629           3 PVTFTPDMSVTEAVEKLLKSKI--SGGPVVDDNGNLVGF-------------------LSEQDCLKQLLES---------   52 (114)
T ss_pred             CeEeCCCCCHHHHHHHHHhcCC--CCccEECCCCeEEEE-------------------eehHHHHHHhhhh---------
Confidence            7789999999999999998888  999999999999999                   5666665422000         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                         .            ....            .                ...+.++|..+++++.+++++.++++.|.++
T Consensus        53 ---~------------~~~~------------~----------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~   89 (114)
T cd04629          53 ---S------------YHCD------------G----------------VATVRDIMTTEVLTVSPDDSIVDLAQLMLKA   89 (114)
T ss_pred             ---h------------hccC------------C----------------CccHHHHhccCceEECCCCcHHHHHHHHHHh
Confidence               0            0000            0                0113456777889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      +.+++||+|+ |+++|+||..||+++
T Consensus        90 ~~~~~~Vv~~-~~~~Gvit~~di~~~  114 (114)
T cd04629          90 KPKRYPVVDD-GKLVGQISRRDVLRA  114 (114)
T ss_pred             CCCccCEEEC-CEEEEEEEHHHHhcC
Confidence            9999999998 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=4.4e-12  Score=105.67  Aligned_cols=110  Identities=20%  Similarity=0.306  Sum_probs=86.2

Q ss_pred             EEEEeCCCcHHHHHHHHHhcC-CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSH-INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR  282 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~  282 (412)
                      +.++.++.++.+|++.|.+++ .  +.++|+| +|+++|+                   ++..|++.+...+        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~-~~~~~G~-------------------v~~~dl~~~~~~~--------   52 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDS--SCVLVVE-KGRLLGI-------------------FTERDIVRLTAIG--------   52 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCC--ceEEEcC-CCcEEEE-------------------EeHHHHHHHHhcC--------
Confidence            678999999999999998887 5  6777777 5899999                   6777776532100        


Q ss_pred             HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC--CcHHHHHHHH
Q 015178          283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW--SSLMAVIMQA  360 (412)
Q Consensus       283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~--~sl~~v~~~m  360 (412)
                                                  .    ...              ..++.++|..+++++.++  +++.+++++|
T Consensus        53 ----------------------------~----~~~--------------~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~   86 (115)
T cd04620          53 ----------------------------K----DLS--------------DLPIGEVMTQPVVTLQESEIQDIFTALSLF   86 (115)
T ss_pred             ----------------------------C----Ccc--------------ccCHHHhcCCCcEEEecccccCHHHHHHHH
Confidence                                        0    000              011234677788899987  6899999999


Q ss_pred             HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      .+++.+++||+|++|+++|+||++|++++
T Consensus        87 ~~~~~~~~pVvd~~~~~~Gvit~~dl~~~  115 (115)
T cd04620          87 RQHQIRHLPVLDDQGQLIGLVTAESIRQV  115 (115)
T ss_pred             HHhCCceEEEEcCCCCEEEEEEhHHhhcC
Confidence            99999999999998999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=4e-12  Score=105.09  Aligned_cols=108  Identities=24%  Similarity=0.247  Sum_probs=88.4

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ..++.+++++.+|++.|.+.+.  +.+||+|++|+++|+                   ++..|++.++...         
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~--~~~~V~~~~~~~~G~-------------------v~~~~l~~~~~~~---------   52 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQ--HEFPVVDGDGHLVGL-------------------LTRDDLIRALAEG---------   52 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCC--CcceEECCCCcEEEE-------------------eeHHHHHHHHHhc---------
Confidence            6788999999999999998888  999999998999999                   5667765532100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                       ..                              ..++.++|..+++++.+++++.++++.|.++
T Consensus        53 -----------------~~------------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~   85 (111)
T cd04639          53 -----------------GP------------------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQG   85 (111)
T ss_pred             -----------------CC------------------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhc
Confidence                             00                              0012345667889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||..|+.+
T Consensus        86 ~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          86 GAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CCceeeEEcCCCCEEEEEEHHHhhc
Confidence            9999999998889999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=3.4e-12  Score=108.65  Aligned_cols=123  Identities=26%  Similarity=0.358  Sum_probs=89.5

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|+++|.+.++  +++||+|++|+++|+                   +|..|++.++.....       
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~G~-------------------it~~dl~~~~~~~~~-------   54 (128)
T cd04632           3 VITVREDDSVGKAINVLREHGI--SRLPVVDDNGKLTGI-------------------VTRHDIVDFVVRDRD-------   54 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCC--CEEEEECCCCcEEEE-------------------EEHHHHHHHHhhhhh-------
Confidence            7789999999999999999999  999999999999999                   556666543210000       


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                       +....  +.....+.+                               ....+.++|..++++|.+++++.+++..|.++
T Consensus        55 -~~~~~--~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~  100 (128)
T cd04632          55 -KARTG--DRSGEKERM-------------------------------LDLPVYDAMSSPVITASPNDSVRDAVDRMLEN  100 (128)
T ss_pred             -hcchh--hhhhhhhhh-------------------------------ccCcHHHHhcCCCceECCCCcHHHHHHHHHhC
Confidence             00000  000000000                               00123467888999999999999999999999


Q ss_pred             CCcEEEEEe--CCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVE--EDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD--~~~~lvGIVT~~DIL~  388 (412)
                      +.+.+||++  ++|+++|+||..||++
T Consensus       101 ~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632         101 DDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            999999985  4689999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.38  E-value=6.2e-12  Score=104.62  Aligned_cols=111  Identities=21%  Similarity=0.403  Sum_probs=91.1

Q ss_pred             CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCc
Q 015178          199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPK  278 (412)
Q Consensus       199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~  278 (412)
                      +.++ ++++.+++++.+|+.+|.++++  +++||++.. +++|+                   +|.+|++.....+.   
T Consensus         5 ~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~~v~~~~-~l~Gi-------------------it~~di~~~~~~~~---   58 (117)
T COG0517           5 MTKD-VITVKPDTSVRDALLLMSENGV--SAVPVVDDG-KLVGI-------------------ITERDILRALAAGG---   58 (117)
T ss_pred             ccCC-CEEECCCCcHHHHHHHHHHcCC--CEEEEeeCC-EEEEE-------------------EEHHHHHHHHhccC---
Confidence            4456 9999999999999999999999  999999753 79999                   66788776431100   


Q ss_pred             hhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHH
Q 015178          279 DLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIM  358 (412)
Q Consensus       279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~  358 (412)
                                                           .   .      .      .++.++|+.+++++.+++++.++++
T Consensus        59 -------------------------------------~---~------~------~~v~~v~~~~~~~~~~~~~~~~~~~   86 (117)
T COG0517          59 -------------------------------------K---R------L------LPVKEVMTKPVVTVDPDTPLEEALE   86 (117)
T ss_pred             -------------------------------------C---c------c------ccHHHhccCCcEEECCCCCHHHHHH
Confidence                                                 0   0      0      0134578889999999999999999


Q ss_pred             HHHH-cCCcEEEEEeCCC-cEEEEEehHHHH
Q 015178          359 QALA-RRVSYVWVVEEDC-TLVGIVTFTGML  387 (412)
Q Consensus       359 ~m~~-~~ihrl~VVD~~~-~lvGIVT~~DIL  387 (412)
                      .|.+ ++++++||+|+++ +++|+||++|++
T Consensus        87 ~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          87 LMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            9999 7999999999986 999999999974

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.37  E-value=4.9e-12  Score=104.57  Aligned_cols=110  Identities=24%  Similarity=0.296  Sum_probs=90.2

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.+.++  +.+||+|++|+++|+                   ++..|++.+....         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~G~-------------------v~~~~l~~~~~~~---------   52 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHSPE--NNFPVVDDDGRLVGI-------------------VSLDDIREILFDP---------   52 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhCCC--cceeEECCCCCEEEE-------------------EEHHHHHHHHhcc---------
Confidence            7889999999999999999988  999999998999999                   6677776532100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                         ..           .                   +            ..++.++|..++.++.+++++.++++.|.+.
T Consensus        53 ---~~-----------~-------------------~------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   87 (114)
T cd04613          53 ---SL-----------Y-------------------D------------LVVASDIMTKPPVVVYPEDSLEDALKKFEDS   87 (114)
T ss_pred             ---cc-----------c-------------------c------------cEEHHHhccCCCcEEcCCCCHHHHHHHHhhC
Confidence               00           0                   0            0113456778899999999999999999999


Q ss_pred             CCcEEEEEeC-CCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEE-DCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~-~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ +++++|+||..|+++
T Consensus        88 ~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          88 DYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             CccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            9999999998 789999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=4e-12  Score=107.61  Aligned_cols=116  Identities=26%  Similarity=0.425  Sum_probs=88.4

Q ss_pred             ceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcC---CCCCCC
Q 015178          116 VIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLL---SPTPNQ  191 (412)
Q Consensus       116 ~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l---~~l~~~  191 (412)
                      ++.++.+++++.+|++.|. ++++++||++.+               .++.+|+||+.|+++++.++....   ......
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~---------------~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~   66 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE---------------SGEVIGILSQRRLVEFLWENARSFPGLDPLYPI   66 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCC---------------CCcEEEEEEHHHHHHHHHHhHHhccchhhhhhh
Confidence            4778999999999999999 788999997531               156789999999999875432111   110001


Q ss_pred             CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccC
Q 015178          192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFN  249 (412)
Q Consensus       192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~  249 (412)
                      .+....++..+ +.++.+++++.+|++.|.++++  +.+||+|++|+++|+||..|++
T Consensus        67 ~~~~~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~--~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          67 PLRDLTIGTSD-VISINGDQPLIDALHLMHNEGI--SSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             hhhhcccCcCC-ceEeCCCCCHHHHHHHHHHcCC--ceEEEECCCCcEEEEEeHHHhh
Confidence            12222356777 9999999999999999999999  9999999989999997655554

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=5.2e-12  Score=106.43  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=88.7

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++++.+|++.|.++++.++||++.                      +++++|+++..||+.++.+.. ..  
T Consensus         2 ~~~~i~~-~~~l~~a~~~~~~~~~~~~pVv~~----------------------~~~~~Giv~~~dl~~~~~~~~-~~--   55 (120)
T cd04641           2 NIATARP-DTPLIDVLDMLVERRVSALPIVDE----------------------NGKVVDVYSRFDVINLAKEGA-YN--   55 (120)
T ss_pred             CcEEEcC-CCCHHHHHHHHHHcCCCeeeEECC----------------------CCeEEEEEeHHHHHHHHhcCc-cc--
Confidence            5789999 999999999999999999999985                      368999999999998754321 10  


Q ss_pred             ccccCCchhhhcc-CC--CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHH
Q 015178           99 ESALQDPVSVLLP-EA--SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDL  174 (412)
Q Consensus        99 ~~~l~~~V~dvm~-~~--~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DI  174 (412)
                        ....++.+.|. ..  ..++.++.+++++.++++.|. ++++++||+++                +++++|+||++|+
T Consensus        56 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----------------~~~~~Givt~~di  117 (120)
T cd04641          56 --NLDLTVGEALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE----------------NKRVEGIISLSDI  117 (120)
T ss_pred             --cccCCHHHHHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC----------------CCCEEEEEEHHHh
Confidence              11122332211 11  123789999999999999999 89999999863                2568999999999


Q ss_pred             HHH
Q 015178          175 IRY  177 (412)
Q Consensus       175 v~~  177 (412)
                      ++|
T Consensus       118 ~~~  120 (120)
T cd04641         118 LQF  120 (120)
T ss_pred             hcC
Confidence            875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.37  E-value=5.4e-12  Score=110.95  Aligned_cols=135  Identities=19%  Similarity=0.303  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178          171 QEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS  250 (412)
Q Consensus       171 q~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~  250 (412)
                      -..|+++|.++.+       ..+..-.+|+++ ++.+.+++++.+|+++|+++++  |-+||+++ +++||-        
T Consensus        50 ~k~Il~aL~e~e~-------~~ita~~iM~sp-vv~v~pdDsi~~vv~lM~~~g~--SQlPVi~~-~k~VGs--------  110 (187)
T COG3620          50 VKRILEALEEAEK-------TRITAKTIMHSP-VVSVSPDDSISDVVNLMRDKGI--SQLPVIEE-DKVVGS--------  110 (187)
T ss_pred             HHHHHHHHHHhhc-------ceEeHhhhccCC-eeEECchhhHHHHHHHHHHcCC--ccCceeeC-Ceeeee--------
Confidence            3556666655432       222333479999 9999999999999999999999  99999987 799999        


Q ss_pred             cchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcccccccccccc
Q 015178          251 CDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVR  330 (412)
Q Consensus       251 ~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  330 (412)
                                 +|+.|+.+..-                         +-++.                            
T Consensus       111 -----------ItE~~iv~~~l-------------------------e~~e~----------------------------  126 (187)
T COG3620         111 -----------ITENDIVRALL-------------------------EGMES----------------------------  126 (187)
T ss_pred             -----------ecHHHHHHHHh-------------------------ccccc----------------------------
Confidence                       45666554210                         00000                            


Q ss_pred             ccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          331 SRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       331 ~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      .++..++++|..+..++.|+.++..+-.++-.|  ..+-|++ +|+++||||..||++.+.
T Consensus       127 i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e-~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         127 IRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVE-NGKVVGIITKADIMKLLA  184 (187)
T ss_pred             hhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEe-CCceEEEEeHHHHHHHHh
Confidence            001125678999999999999997665555443  3566775 589999999999998765

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.36  E-value=7.6e-12  Score=104.54  Aligned_cols=119  Identities=23%  Similarity=0.286  Sum_probs=89.2

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.++.++.+|++.|.+.++  ..+||+|+ |+++|+                   ++..|++.+......       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------i~~~~l~~~~~~~~~-------   53 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENSI--RRLPVVDR-GKLVGI-------------------VTDRDLKLASPSKAT-------   53 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCCc--ceeeEecC-CeEEEE-------------------EeHHHHHHhhhcccc-------
Confidence            7789999999999999999988  99999998 999999                   555665543210000       


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                         ..   ..... . +                          .   ....++.++|.++++++.+++++.+++..|.++
T Consensus        54 ---~~---~~~~~-~-~--------------------------~---~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   96 (122)
T cd04585          54 ---TL---DIWEL-Y-Y--------------------------L---LSKIKVSDIMTRDPITVSPDASVEEAAELMLER   96 (122)
T ss_pred             ---cc---cchhh-h-h--------------------------h---hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHc
Confidence               00   00000 0 0                          0   001123456778899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||..||++
T Consensus        97 ~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          97 KISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             CCCceeEECCCCcEEEEEEHHHhhh
Confidence            9999999998899999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.36  E-value=1e-11  Score=102.35  Aligned_cols=108  Identities=22%  Similarity=0.297  Sum_probs=88.5

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.+.+.  ..+||+|+ |+++|+                   ++..|++++...+         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~~l~~~~~~~---------   51 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRI--SSIVVVDD-GRPLGI-------------------VTERDILRLLASG---------   51 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCC--CEEEEeeC-CEEEEE-------------------EeHHHHHHHHhcC---------
Confidence            6789999999999999999888  99999987 899999                   6677776532100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                      .               .               ...++.++|..+++++.+++++.++++.|.+.
T Consensus        52 ----------------~---------------~---------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~   85 (111)
T cd04611          52 ----------------P---------------D---------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREH   85 (111)
T ss_pred             ----------------C---------------C---------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHc
Confidence                            0               0               00112345677899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||+.||++
T Consensus        86 ~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          86 GIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCeEEEEECCCCcEEEEEEhHHhhc
Confidence            9999999999899999999999986

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.36  E-value=6.7e-12  Score=103.91  Aligned_cols=110  Identities=13%  Similarity=0.199  Sum_probs=87.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.+++++.+|++.|.+++.  +.+||+|+ |+++|+                   ++..|++....           
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~dl~~~~~-----------   49 (113)
T cd04587           3 PATVSPTTTVQEAAKLMREKRV--SCVLVMDG-NKLVGI-------------------FTSKDIALRVV-----------   49 (113)
T ss_pred             CeEeCCCCCHHHHHHHHHHcCC--CeEEEEEC-CEEEEE-------------------EEhHHHHHHHH-----------
Confidence            7789999999999999999988  99999998 999999                   56677653210           


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                       ...       .        +      ..    ..++.++|..++.++.+++++.++++.|.++
T Consensus        50 -----------------~~~-------~--------~------~~----~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~   87 (113)
T cd04587          50 -----------------AQG-------L--------D------PE----STLVERVMTPNPVCATSDTPVLEALHLMVQG   87 (113)
T ss_pred             -----------------hcC-------C--------C------cC----cCCHHHhcCCCCeEEcCCCCHHHHHHHHHHc
Confidence                             000       0        0      00    0113456777899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||..||+.
T Consensus        88 ~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          88 KFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCCcccEECCCCCEEEEEEHHHhcc
Confidence            9999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.35  E-value=4.2e-12  Score=133.25  Aligned_cols=108  Identities=13%  Similarity=0.114  Sum_probs=88.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL  280 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~  280 (412)
                      .+++++++++.+|+++|.++++  +++||+|+   +|+++|+|                   |.+|++....        
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~--~~vpVVD~~~~~gkLvGIV-------------------T~~DLr~~~~--------  157 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGH--STVAVTEDGTAHGKLLGIV-------------------TSRDYRISRM--------  157 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCC--CeEEEEeCCCcCCEEEEEE-------------------EcHHhhcccc--------
Confidence            4689999999999999999999  99999997   58999994                   5555532100        


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeCCCCcHHHHHH
Q 015178          281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCHPWSSLMAVIM  358 (412)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~~~~sl~~v~~  358 (412)
                            .            .                                ..++.++|+.  +++++++++++.++++
T Consensus       158 ------~------------~--------------------------------~~~V~dIMt~~~~~itv~~d~~l~eAl~  187 (502)
T PRK07107        158 ------S------------L--------------------------------DTKVKDFMTPFEKLVTANEGTTLKEAND  187 (502)
T ss_pred             ------C------------C--------------------------------CCCHHHHhCCCCCeEEECCCCcHHHHHH
Confidence                  0            0                                0113456765  7899999999999999


Q ss_pred             HHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          359 QALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       359 ~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      +|.++++++|||||++++|+|+||++||++.-
T Consensus       188 lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        188 IIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             HHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            99999999999999989999999999999864

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.35  E-value=7.7e-12  Score=102.90  Aligned_cols=105  Identities=24%  Similarity=0.332  Sum_probs=83.1

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.++++.|.+++.  +++||+|++|+++|+++                   ..|++.....    .     
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~-------------------~~~l~~~~~~----~-----   53 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGI--SGLPVVDDDGKLVGIVT-------------------NRDLRFETDL----D-----   53 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCC--ceEEEEcCCCEEEEEEE-------------------hhHeeecccC----C-----
Confidence            7789999999999999999988  99999999899999955                   4444321000    0     


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC-CCcHHHHHHHHHH
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP-WSSLMAVIMQALA  362 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~-~~sl~~v~~~m~~  362 (412)
                                                                        .++.++|..++..+.+ ++++.+++++|.+
T Consensus        54 --------------------------------------------------~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~   83 (110)
T cd04601          54 --------------------------------------------------KPVSEVMTPENLLTTVEGTSLEEALELLHE   83 (110)
T ss_pred             --------------------------------------------------CCHHHhcccCceEEecCCCCHHHHHHHHHH
Confidence                                                              0012344455566666 9999999999999


Q ss_pred             cCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          363 RRVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       363 ~~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      ++.+++||+|++|+++|+||.+|+++
T Consensus        84 ~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          84 HKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             hCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            99999999998899999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.35  E-value=6.3e-12  Score=103.98  Aligned_cols=103  Identities=26%  Similarity=0.294  Sum_probs=82.9

Q ss_pred             EEeCCCcHHHHHHHHHhcC-----CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178          206 AIQYDEPAAFAIPLIAQSH-----INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL  280 (412)
Q Consensus       206 tv~~~~~~~~a~~~m~~~~-----i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~  280 (412)
                      ++.+++++.++++.|.+++     .  ..+||+|++|+++|+                   ++..|++..-     .+  
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvd~~~~~~G~-------------------v~~~~l~~~~-----~~--   52 (109)
T cd04606           1 AVREDWTVGEALEYLRRNADDPETI--YYIYVVDEEGRLLGV-------------------VSLRDLLLAD-----PD--   52 (109)
T ss_pred             CccccCcHHHHHHHHHhccCcccce--eEEEEECCCCCEEEE-------------------EEHHHHhcCC-----Cc--
Confidence            3578899999999998876     5  689999988999999                   4555554310     00  


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178          281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA  360 (412)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m  360 (412)
                                                                           .++.++|..++.++.+++++.++++.|
T Consensus        53 -----------------------------------------------------~~v~~~~~~~~~~i~~~~~~~~~~~~~   79 (109)
T cd04606          53 -----------------------------------------------------TPVSDIMDTDVISVSADDDQEEVARLF   79 (109)
T ss_pred             -----------------------------------------------------chHHHHhCCCCeEEcCCCCHHHHHHHH
Confidence                                                                 001234556789999999999999999


Q ss_pred             HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      .+++.+++||+|++|+++|+||..|++++
T Consensus        80 ~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          80 EKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            99999999999988999999999999976

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.35  E-value=1.8e-11  Score=100.91  Aligned_cols=107  Identities=23%  Similarity=0.307  Sum_probs=88.0

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++++++++.+|++.|.++++  +.+||+|+ |+++|+                   ++..|+++....+.        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~-------------------v~~~~l~~~~~~~~--------   52 (110)
T cd04588           3 LITLNPNATLREAARLFNTHHI--HGAPVVDD-GKLVGI-------------------VTLSDIAHAIARGL--------   52 (110)
T ss_pred             cEEECCCCCHHHHHHHHHHcCC--CEEEEeeC-CEEEEE-------------------EEHHHHHHHHhccc--------
Confidence            7889999999999999999988  99999998 999999                   56677665321000        


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                      .          .      ..+.++|..++.++.+++++.+++++|.++
T Consensus        53 --------------------------------~----------~------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~   84 (110)
T cd04588          53 --------------------------------E----------L------AKVKDVMTKDVITIDEDEQLYDAIRLMNKH   84 (110)
T ss_pred             --------------------------------c----------c------cCHHHHhcCCceEECCCCCHHHHHHHHHhc
Confidence                                            0          0      012345667889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||..||++
T Consensus        85 ~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          85 NVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             CCCEEEEECCCCCEEEEEEhHHhhc
Confidence            9999999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.34  E-value=1.3e-11  Score=101.91  Aligned_cols=108  Identities=24%  Similarity=0.362  Sum_probs=87.0

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.+++++.++.+|.+.|.+++.  +.+||+|+ |+++|+                   ++..|++.+....         
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~i~V~~~-~~~~G~-------------------v~~~~l~~~~~~~---------   51 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEHRV--SSLLVVDD-GRLVGI-------------------VTDRDLRNRVVAE---------   51 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCC--CeEEEEEC-CEEEEE-------------------EEhHHHHHHHhcc---------
Confidence            7889999999999999999988  99999998 899999                   5566665421000         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                              +       ..               .               ..++.++|..+++++.+++++.+++++|.++
T Consensus        52 --------~-------~~---------------~---------------~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~   86 (111)
T cd04800          52 --------G-------LD---------------P---------------DTPVSEVMTAPPITIPPDATVFEALLLMLER   86 (111)
T ss_pred             --------C-------CC---------------c---------------cCCHHHHhCCCCeEECCCCcHHHHHHHHHHc
Confidence                    0       00               0               0112346677899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ |+++|+||..||++
T Consensus        87 ~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          87 GIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             CCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            9999999998 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.2e-11  Score=106.05  Aligned_cols=129  Identities=21%  Similarity=0.321  Sum_probs=89.8

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.+.+.  +++||+|++|+++|+|+                   ..|++.+...........  
T Consensus         3 ~~~v~~~~~l~~~~~~~~~~~~--~~~~V~d~~~~~~G~i~-------------------~~~l~~~~~~~~~~~~~~--   59 (132)
T cd04636           3 VITVKKDDTLRDVVEILLTGKI--SGVPVVDNEGRVVGIVS-------------------EGDLIRKIYKGKGLFYVT--   59 (132)
T ss_pred             CeEeCCCCcHHHHHHHHHHhCC--CccceECCCCCEEEEEe-------------------HHHHHHHHhccCCccccc--
Confidence            7889999999999999999988  99999999999999954                   555544321100000000  


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                              ..... . +                .. +     ....+....++.++|.++++.+.+++++.+++..|.++
T Consensus        60 --------~~~~~-~-~----------------~~-~-----~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~  107 (132)
T cd04636          60 --------LLYSV-I-F----------------LD-E-----SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKK  107 (132)
T ss_pred             --------ccccc-c-c----------------cc-h-----HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHC
Confidence                    00000 0 0                00 0     00000001124567778899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ |+++|+||..|+++
T Consensus       108 ~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636         108 NIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            9999999998 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.34  E-value=1.5e-11  Score=101.67  Aligned_cols=106  Identities=26%  Similarity=0.320  Sum_probs=86.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++..+.++.+|.+.|.+.+.  +.+||+|+ |+++|+                   ++..|++.....+         
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------v~~~dl~~~~~~~---------   52 (110)
T cd04595           4 VKTVRPEATIEEARELLLRYGH--TALPVVEG-GRVVGI-------------------ISRRDVEKALRHG---------   52 (110)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCC--CeeeEeeC-CEEEEE-------------------EEHHHHHHHHhcc---------
Confidence            7889999999999999998888  99999998 999999                   5667765422100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                      ..                               ..++.++|..+++++.+++++.+++++|.++
T Consensus        53 ----------------~~-------------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   85 (110)
T cd04595          53 ----------------LG-------------------------------HAPVKDYMSTDVVTVPPDTPLSEVQELMVEH   85 (110)
T ss_pred             ----------------cc-------------------------------cCcHHHHhcCCCEEECCCCcHHHHHHHHHHc
Confidence                            00                               0012345677899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+| +|+++|+||+.||++
T Consensus        86 ~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          86 DIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             CCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            999999999 689999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.34  E-value=1.3e-11  Score=101.64  Aligned_cols=108  Identities=23%  Similarity=0.324  Sum_probs=88.0

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.+++++.++++.|.+.+.  +.+||+|+ |+++|+                   ++..|+......+         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~-------------------v~~~dl~~~~~~~---------   51 (111)
T cd04612           3 VVTVPVDLTVDEVLALMFGERH--RGYPVVDD-GRLVGI-------------------VTLADIRRVPAEG---------   51 (111)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCC--CcceEeeC-CeEEEE-------------------EEHHHHHHHHhcC---------
Confidence            7789999999999999999988  99999998 999999                   6677765421100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                         .            ..                               ...+.+.|..++.++.+++++.+++++|.++
T Consensus        52 ---~------------~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   85 (111)
T cd04612          52 ---R------------EA-------------------------------TVLVGDVMTRDPVTASPDETLRDALKRMAER   85 (111)
T ss_pred             ---c------------cc-------------------------------ccCHHHhccCCCeEECCCCCHHHHHHHHHhC
Confidence               0            00                               0002245677899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||..||++
T Consensus        86 ~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          86 DIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             CCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            9999999998899999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.34  E-value=1.4e-11  Score=100.98  Aligned_cols=103  Identities=26%  Similarity=0.392  Sum_probs=85.3

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++..+.++.++++.|.+.+.  +.+||+|+ ++++|+                   ++..|++..-     ..     
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~-~~~~g~-------------------v~~~~l~~~~-----~~-----   51 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKETGH--DGFPVVDN-GKVVGI-------------------VSARDLLGKD-----PD-----   51 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHcCC--CeeeEeEC-CEEEEE-------------------EEHHHhhccC-----cc-----
Confidence            7889999999999999988888  89999997 899999                   5555654310     00     


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                                        .++.++|...+.++.+++++.++++.|.++
T Consensus        52 --------------------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   81 (107)
T cd04610          52 --------------------------------------------------ETVEEIMSKDLVVAVPEMDIMDAARVMFRT   81 (107)
T ss_pred             --------------------------------------------------ccHHHhCCCCCeEECCCCCHHHHHHHHHHh
Confidence                                                              001234566789999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+|+..||++
T Consensus        82 ~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          82 GISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             CCCeEeEECCCCeEEEEEEHHHhhc
Confidence            9999999999899999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.33  E-value=2.6e-11  Score=129.15  Aligned_cols=190  Identities=17%  Similarity=0.175  Sum_probs=127.8

Q ss_pred             CCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHc
Q 015178          103 QDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       103 ~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~  181 (412)
                      ..+|+++|...   ++++++++++.+|+++|. ++++++||+++                +++.+|+||..|+.+++.+.
T Consensus        67 ~~~V~dim~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~g~l~Givt~~di~~~~~~~  127 (546)
T PRK14869         67 KPQVRDLEIDK---PVTVSPDTSLKEAWNLMDENNVKTLPVVDE----------------EGKLLGLVSLSDLARAYMDI  127 (546)
T ss_pred             CCcHHHhcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCEEEEEEEHHHHHHHHHhh
Confidence            46799999855   899999999999999999 89999999863                35789999999999976642


Q ss_pred             cC--cCCCC---------------C------CCCccc-----------ccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCC
Q 015178          182 IG--LLSPT---------------P------NQPINS-----------LNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQ  227 (412)
Q Consensus       182 ~~--~l~~l---------------~------~~~i~~-----------L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~  227 (412)
                      ..  .+...               .      ......           ++.+.++.++.+.....   ....+.++++  
T Consensus       128 ~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d---~~~~ai~~~~--  202 (546)
T PRK14869        128 LDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRED---IQLAAIEAGV--  202 (546)
T ss_pred             cchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHH---HHHHHHHcCC--
Confidence            11  01100               0      000000           11233332555533332   3445777888  


Q ss_pred             ceeEEEcCCC------------cEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhH
Q 015178          228 TSVALVDEEG------------RLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVG  295 (412)
Q Consensus       228 s~vpVVd~~g------------~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~  295 (412)
                      +++.|.....            .+.++                   .|..|.....                        
T Consensus       203 ~~lIlt~g~~~~~~v~~la~~~~i~ii-------------------~t~~dt~~t~------------------------  239 (546)
T PRK14869        203 RLLIITGGAPVSEDVLELAKENGVTVI-------------------STPYDTFTTA------------------------  239 (546)
T ss_pred             CEEEECCCCCCCHHHHHHHHhCCCeEE-------------------EecccHHHHH------------------------
Confidence            8887775432            12222                   1111211100                        


Q ss_pred             HHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-CCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCC
Q 015178          296 FLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-SEAILCHPWSSLMAVIMQALARRVSYVWVVEED  374 (412)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~  374 (412)
                        ..+                              ....++.++|+ ++++++++++++.++.++|.+++++++||||++
T Consensus       240 --~~l------------------------------~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~  287 (546)
T PRK14869        240 --RLI------------------------------NQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED  287 (546)
T ss_pred             --HHh------------------------------hcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC
Confidence              000                              01234678898 899999999999999999999999999999999


Q ss_pred             CcEEEEEehHHHHHHHH
Q 015178          375 CTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       375 ~~lvGIVT~~DIL~~l~  391 (412)
                      |+++|+||+.|+++...
T Consensus       288 g~lvGiit~~dl~~~~~  304 (546)
T PRK14869        288 GKVVGVISRYHLLSPVR  304 (546)
T ss_pred             CCEEEEEEHHHhhcccc
Confidence            99999999999998654

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.33  E-value=1.2e-11  Score=103.26  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=83.2

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL  280 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~  280 (412)
                      +.++.+++++.+|++.|.++++  +.+||+|+   +|+++|+                   ++..|++.....       
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~~~~G~-------------------v~~~dl~~~~~~-------   55 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKKGF--SGIPVTEDGKSGGKLLGI-------------------VTSRDIDFLTDS-------   55 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHcCC--CceEEeeCCCcCCEEEEE-------------------EEhHHhhhhhcc-------
Confidence            6788999999999999999988  99999997   7899999                   445555421000       


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC--CCcHHHHHH
Q 015178          281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP--WSSLMAVIM  358 (412)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~--~~sl~~v~~  358 (412)
                                                         .                 .++.++|..+..++.+  ++++.++++
T Consensus        56 -----------------------------------~-----------------~~v~~~~~~~~~~~~~~~~~~l~~~l~   83 (114)
T cd04602          56 -----------------------------------E-----------------TPLSEVMTPREVLVVAPTGITLEEANE   83 (114)
T ss_pred             -----------------------------------C-----------------CCHHHhcCCCceEEECCCCCCHHHHHH
Confidence                                               0                 0012345555666655  999999999


Q ss_pred             HHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          359 QALARRVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       359 ~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      .|.+++.+++||||++|+++|+||++||++
T Consensus        84 ~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          84 ILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             HHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.33  E-value=9.9e-12  Score=130.63  Aligned_cols=113  Identities=19%  Similarity=0.077  Sum_probs=93.8

Q ss_pred             CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178          199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR  275 (412)
Q Consensus       199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~  275 (412)
                      |.++ ++++++++|+.+|+++|.++++  +++||+|+   +|+++|+                   +|..|++.....  
T Consensus       106 mi~d-pvtV~pd~tV~dA~~lm~~~~~--~~lpVvD~~~~~GklvGI-------------------VT~~DL~~v~~~--  161 (505)
T PLN02274        106 FVSD-PVVKSPSSTISSLDELKASRGF--SSVCVTETGTMGSKLLGY-------------------VTKRDWDFVNDR--  161 (505)
T ss_pred             ccCC-CeeeCCCCcHHHHHHHHHhcCC--ceEEEEeCCCcCCeEEEE-------------------EEHHHHhhcccc--
Confidence            5567 9999999999999999999999  99999997   4899999                   556666431000  


Q ss_pred             CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC--ceEeCCCCcH
Q 015178          276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE--AILCHPWSSL  353 (412)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~--vvt~~~~~sl  353 (412)
                                                                               ..++.++|+++  ++++.+++++
T Consensus       162 ---------------------------------------------------------~~~V~eIMt~~~~lvtv~~~~sL  184 (505)
T PLN02274        162 ---------------------------------------------------------ETKLSEVMTSDDDLVTAPAGIDL  184 (505)
T ss_pred             ---------------------------------------------------------CCcHHHHhccCCCcEEECCCCCH
Confidence                                                                     00123466655  8999999999


Q ss_pred             HHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       354 ~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      .++++.|.+++++++||||++++++|+||++||++.+..
T Consensus       185 ~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        185 EEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            999999999999999999999999999999999988763

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.33  E-value=9.1e-12  Score=133.44  Aligned_cols=124  Identities=19%  Similarity=0.185  Sum_probs=99.8

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      .++++  +|+++ +.++++++++.++++.|.+++.  +.+||+|++|+++|+                   ++.+|+++.
T Consensus       447 ~~V~d--im~~~-~~~v~~~~tl~ea~~~l~~~~~--~~~~VvD~~g~lvGi-------------------Vt~~dL~~~  502 (574)
T PRK01862        447 TQMRE--LIQPA-QTVVPPTASVADMTRVFLEYPV--KYLYVVDDDGRFRGA-------------------VALKDITSD  502 (574)
T ss_pred             CcHHH--HhcCC-CceeCCCCCHHHHHHHHHhCCC--ceEEEEcCCCeEEEE-------------------EEHHHHHHH
Confidence            34554  68888 8899999999999999999988  999999999999999                   566776542


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW  350 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~  350 (412)
                      ...                            +..           ..               +.++.++|++++.+++++
T Consensus       503 l~~----------------------------~~~-----------~~---------------~~~v~dim~~~~~~v~~d  528 (574)
T PRK01862        503 LLD----------------------------KRD-----------TT---------------DKTAADYAHTPFPLLTPD  528 (574)
T ss_pred             hhc----------------------------ccc-----------cc---------------cchHHHhccCCCeeECCC
Confidence            100                            000           00               011345788889999999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEEeCC--CcEEEEEehHHHHHHHHH
Q 015178          351 SSLMAVIMQALARRVSYVWVVEED--CTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       351 ~sl~~v~~~m~~~~ihrl~VVD~~--~~lvGIVT~~DIL~~l~~  392 (412)
                      +++.+++++|.+++.+++||||++  ++++|+||++|+++++.+
T Consensus       529 ~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        529 MPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999999999987  489999999999999865

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.33  E-value=1.2e-11  Score=123.27  Aligned_cols=123  Identities=17%  Similarity=0.185  Sum_probs=101.8

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI   85 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di   85 (412)
                      ..++|+|+|...++++++++ ++|+.+|++.|.++++..+||+|.                      +++++|+||..|+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~-~~sl~~a~~~~~~~~~~~~vVvd~----------------------~g~lvGivt~~Dl  256 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSK-TASLRDALLEITRKNLGMTVICDD----------------------NMKIEGIFTDGDL  256 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECC-CCCHHHHHHHHHhcCCCeEEEEcC----------------------CCcEEEEEecHHH
Confidence            45679999963238999999 999999999999999988888885                      3689999999999


Q ss_pred             HHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178           86 ISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDS  164 (412)
Q Consensus        86 l~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~  164 (412)
                      .+.+.....      ....+|+++|...   ++++.+++++.+|++.|. ++++++||+++                 ++
T Consensus       257 ~~~~~~~~~------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-----------------~~  310 (326)
T PRK10892        257 RRVFDMGID------LRQASIADVMTPG---GIRVRPGILAVDALNLMQSRHITSVLVADG-----------------DH  310 (326)
T ss_pred             HHHHhcCCC------cccCCHHHhcCCC---CEEECCCCCHHHHHHHHHHCCCcEEEEeeC-----------------CE
Confidence            875433111      1236799999855   889999999999999999 99999999742                 46


Q ss_pred             eeeeecHHHHHHH
Q 015178          165 EYCWLTQEDLIRY  177 (412)
Q Consensus       165 ~v~iITq~DIv~~  177 (412)
                      ++|+||+.||++.
T Consensus       311 lvGiit~~dil~~  323 (326)
T PRK10892        311 LLGVLHMHDLLRA  323 (326)
T ss_pred             EEEEEEhHHhHhc
Confidence            8999999999874

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.32  E-value=1.9e-11  Score=127.21  Aligned_cols=121  Identities=22%  Similarity=0.221  Sum_probs=99.8

Q ss_pred             CCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHh-----cCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcC
Q 015178          189 PNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQ-----SHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLS  263 (412)
Q Consensus       189 ~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~-----~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls  263 (412)
                      ...++++  +|+++ ++++.++.++.+|++.|++     +++  ..++|+|++++++|+                   ++
T Consensus       129 ~e~tvg~--iMt~~-~~~v~~~~tv~eal~~l~~~~~~~~~~--~~v~Vvd~~~~l~Gv-------------------V~  184 (449)
T TIGR00400       129 SDDSAGR--IMTIE-YVELKEDYTVGKALDYIRRVAKTKEDI--YTLYVTNESKHLKGV-------------------LS  184 (449)
T ss_pred             CcchHHH--hCcCc-eEEECCCCcHHHHHHHHHhcCCCccce--eEEEEECCCCeEEEE-------------------EE
Confidence            3456665  68888 9999999999999999986     455  789999999999999                   55


Q ss_pred             HhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC
Q 015178          264 AGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE  343 (412)
Q Consensus       264 ~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~  343 (412)
                      .+|++..-     .                                                       +.+++++|+++
T Consensus       185 l~dLl~a~-----~-------------------------------------------------------~~~v~~im~~~  204 (449)
T TIGR00400       185 IRDLILAK-----P-------------------------------------------------------EEILSSIMRSS  204 (449)
T ss_pred             HHHHhcCC-----C-------------------------------------------------------CCcHHHHhCCC
Confidence            66654310     0                                                       00134567788


Q ss_pred             ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          344 AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       344 vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      ++++++++++.++++.|.+++.+.+||||++|+++|+||..|+++.+.++
T Consensus       205 ~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       205 VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999998764

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=1.9e-11  Score=101.19  Aligned_cols=110  Identities=17%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.+++.  +.+||+|+ |+++|+                   ++..|++...            
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~-------------------i~~~~l~~~~------------   48 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDV--GALPVCEN-DRLVGI-------------------VTDRDIVVRA------------   48 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCC--CEEEEeeC-CEEEEE-------------------EEhHHHHHHH------------
Confidence            7889999999999999999988  99999998 999999                   5556654210            


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                          +            ...       ..   ..               ..++.++|...+.++.+++++.++++.|.++
T Consensus        49 ----~------------~~~-------~~---~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   87 (113)
T cd04622          49 ----V------------AEG-------RD---PD---------------TTTVGDVMTRGVVTVTEDDDVDEAARLMREH   87 (113)
T ss_pred             ----h------------hcc-------CC---cc---------------cCCHHHhccCCccEECCCCCHHHHHHHHHHc
Confidence                0            000       00   00               0013456777899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|+||..|+++
T Consensus        88 ~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          88 QVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999998899999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=1.9e-11  Score=101.22  Aligned_cols=110  Identities=21%  Similarity=0.360  Sum_probs=85.7

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.+++++.+|++.|.+++.  +.++|.++ |+++|+                   ++..|++......         
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~-------------------v~~~dl~~~~~~~---------   51 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDL--GSLVVMER-GELVGL-------------------LTFREVLQAMAQH---------   51 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCC--CeEEEeeC-CEEEEE-------------------EEHHHHHHHHHhc---------
Confidence            7889999999999999988877  88877754 899999                   6677776532100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                              +.. .                                   ...++.++|..++.++.+++++.+++++|.++
T Consensus        52 --------~~~-~-----------------------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~   87 (112)
T cd04625          52 --------GAG-V-----------------------------------LDTTVRAIMNPEPIVASPDDSIDEVRRLMVER   87 (112)
T ss_pred             --------CCc-h-----------------------------------hcCCHHHHhCCCCeEECCCCCHHHHHHHHHHc
Confidence                    000 0                                   00113456777889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      +.+++||+|+ |+++|+||.+||+++
T Consensus        88 ~~~~l~Vv~~-~~~~Gvvt~~dl~~~  112 (112)
T cd04625          88 HLRYLPVLDG-GTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCeeeEEEC-CEEEEEEEHHHhhcC
Confidence            9999999985 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.31  E-value=2.3e-11  Score=99.30  Aligned_cols=102  Identities=21%  Similarity=0.238  Sum_probs=83.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.+++++.++++.|.+++.  +.+||+| +|+++|+                   ++..|++.....          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d-~~~~~Gi-------------------v~~~~l~~~~~~----------   50 (105)
T cd04599           3 PITIDPLDSVGRAARLMEKHRI--GGLPVVE-DGKLVGI-------------------ITSRDVRRAHPN----------   50 (105)
T ss_pred             CEEECCCCcHHHHHHHHHHcCC--CEEEEEE-CCEEEEE-------------------EehHHhhccccc----------
Confidence            6789999999999999999988  9999998 5899999                   556665441100          


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                                        ..+.++|..++.++.+++++.+++++|.++
T Consensus        51 --------------------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   80 (105)
T cd04599          51 --------------------------------------------------RLVADAMTREVVTISPEASLLEAKRLMEEK   80 (105)
T ss_pred             --------------------------------------------------CCHHHHccCCCEEECCCCCHHHHHHHHHHc
Confidence                                                              001224556789999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +..++||+|+ |+++|+||..||+.
T Consensus        81 ~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          81 KIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             CCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            9999999998 89999999999973

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.31  E-value=3.1e-11  Score=99.90  Aligned_cols=108  Identities=16%  Similarity=0.152  Sum_probs=86.7

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.++.++.+|++.|.+++.  +.++|+|+ |+++|+                   ++..|++.....+         
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------v~~~~l~~~~~~~---------   51 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGA--DALLVRDG-DPRLGI-------------------VTRTDLLDAVLLD---------   51 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCC--CEEEEecC-CeEEEE-------------------EEHHHHHHHHHcC---------
Confidence            6788999999999999999988  99999998 899999                   5666765421000         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                      ...             ...++.++|..+++++.+++++.++++.|.++
T Consensus        52 --------------------------------~~~-------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~   86 (111)
T cd04589          52 --------------------------------GLP-------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRH   86 (111)
T ss_pred             --------------------------------CCC-------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHh
Confidence                                            000             00113356777899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ |+++|+||..|+++
T Consensus        87 ~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          87 RIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             CccEEEEeeC-CEEEEEEEhHHhhc
Confidence            9999999986 89999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3e-11  Score=101.62  Aligned_cols=119  Identities=18%  Similarity=0.245  Sum_probs=89.0

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.++.++.+|++.|.++++  +++||+|+ |+++|+                   ++..|++.........+     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------v~~~~l~~~~~~~~~~~-----   55 (122)
T cd04637           3 VVTVEMDDRLEEVREIFEKHKF--HHLLVVED-NELVGV-------------------ISDRDYLKAISPFLGTA-----   55 (122)
T ss_pred             ceEeCCCCCHHHHHHHHHhCCC--CEEEEEeC-CeEEEE-------------------EEHHHHHHHHHHHhccc-----
Confidence            7889999999999999999999  99999997 899999                   55666654321000000     


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                         +      ....+....                              ..++.++|..+++++.+++++.++++.|.++
T Consensus        56 ---~------~~~~~~~~~------------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   96 (122)
T cd04637          56 ---G------ETEKDLATL------------------------------NRRAHQIMTRDPITVSPDTPVDEASKLLLEN   96 (122)
T ss_pred             ---c------chHHHHHHH------------------------------HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHc
Confidence               0      000000000                              0012345777899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|++|+.|+++
T Consensus        97 ~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          97 SISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             CCCeEeEECCCCCEEEEEEHHHhhh
Confidence            9999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.31  E-value=2.1e-11  Score=100.21  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             EEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHH
Q 015178          205 FAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLV  284 (412)
Q Consensus       205 ~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~  284 (412)
                      +++.++.++.+|++.|.+.++  +.+||+|+ |+++|+                   ++..|++....            
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------v~~~~l~~~~~------------   49 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDL--LSLPVVDY-NKFLGA-------------------VYLKDIENATY------------   49 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCC--cEEEEEEC-CEEEEE-------------------EEHHHHhhhcc------------
Confidence            457899999999999999988  99999998 999999                   55666543100            


Q ss_pred             HHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcC
Q 015178          285 KQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARR  364 (412)
Q Consensus       285 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~  364 (412)
                                   .                                    ++.++|..+++++.+++++.+++..|.+++
T Consensus        50 -------------~------------------------------------~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~   80 (104)
T cd04594          50 -------------G------------------------------------DVVDYIVRGIPYVRLTSTAEEAWEVMMKNK   80 (104)
T ss_pred             -------------c------------------------------------chhhhhhcCCcEEcCCCCHHHHHHHHHHcC
Confidence                         0                                    011235566889999999999999999999


Q ss_pred             CcEEEEEeCCCcEEEEEehHHHHH
Q 015178          365 VSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       365 ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      .+++||+| +|+++|+||+.||++
T Consensus        81 ~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          81 TRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             cceEEEEE-CCEEEEEEEHHHhhc
Confidence            99999998 489999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.31  E-value=2.3e-11  Score=101.36  Aligned_cols=109  Identities=9%  Similarity=0.122  Sum_probs=90.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++++++. ++++.+|++.|.+++..++||+|.                      +++++|+++..|+.+...+       
T Consensus         2 ~~~~v~~-~~~l~~a~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~dl~~~~~~-------   51 (111)
T cd04603           2 QTVSVNC-ENPLREAIKMINELGARAVVVVDE----------------------ENKVLGQVTLSDLLEIGPN-------   51 (111)
T ss_pred             ceEEeCC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCCEEEEEEHHHHHhhccc-------
Confidence            3678889 999999999999999999999995                      3689999999999873211       


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                       .....++.++|...   +.++.+++++.+|++.|. ++.+++||+++                +++++|+||+.|++++
T Consensus        52 -~~~~~~v~~~~~~~---~~~v~~~~~l~~al~~m~~~~~~~lpVvd~----------------~~~~~Giit~~di~~~  111 (111)
T cd04603          52 -DYETLKVCEVYIVP---VPIVYCDSKVTDLLRIFRETEPPVVAVVDK----------------EGKLVGTIYERELLRF  111 (111)
T ss_pred             -cccccChhheeecC---CcEECCCCcHHHHHHHHHHcCCCeEEEEcC----------------CCeEEEEEEhHHhhcC
Confidence             11235788999644   789999999999999999 89999999863                2568999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.31  E-value=1.5e-11  Score=128.28  Aligned_cols=113  Identities=21%  Similarity=0.187  Sum_probs=94.6

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|.++ ++++.+++++.+|+++|.++++  +.+||+|+ ++++|+                   +|.+|+... +.    
T Consensus        93 im~~~-pvtv~p~~tI~eA~~lm~~~~~--~~~vVvD~-gklvGI-------------------VT~rDL~~~-~~----  144 (475)
T TIGR01303        93 LVLDT-PITLAPHDTVSDAMALIHKRAH--GAAVVILE-DRPVGL-------------------VTDSDLLGV-DR----  144 (475)
T ss_pred             ccccC-CeEECCCCCHHHHHHHHHhcCC--eEEEEEEC-CEEEEE-------------------EEHHHhhcC-CC----
Confidence            46677 8999999999999999999998  99999985 799999                   556665321 00    


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                                                             ..++.++|+.+++++.+++++.+++
T Consensus       145 -------------------------------------------------------~~~V~dIMt~~litv~~~~sL~eAl  169 (475)
T TIGR01303       145 -------------------------------------------------------FTQVRDIMSTDLVTAPADTEPRKAF  169 (475)
T ss_pred             -------------------------------------------------------CCCHHHHccCCceEeCCCCcHHHHH
Confidence                                                                   0012356888999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      ++|.+++++++||||++|+++|+||++||+++....
T Consensus       170 ~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       170 DLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             HHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            999999999999999889999999999999976543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.30  E-value=2.2e-11  Score=104.13  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=90.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++++++++ +.|+.+|++.|.++++..+||+|.                      +++++|+++..|++..+.+...   
T Consensus         2 ~~~~~v~~-~~~v~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Gii~~~dl~~~~~~~~~---   55 (124)
T cd04608           2 KAPVTVLP-TVTCAEAIEILKEKGFDQLPVVDE----------------------SGKILGMVTLGNLLSSLSSGKV---   55 (124)
T ss_pred             CCCEEECC-CCCHHHHHHHHHHcCCCEEEEEcC----------------------CCCEEEEEEHHHHHHHHHHhcc---
Confidence            45788999 999999999999999999999985                      3579999999999987654221   


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh----------cCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL----------GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC  167 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~----------~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~  167 (412)
                         ....+|+++|...   +.++.+++++.++.++|.          .+.++++|++                ++++++|
T Consensus        56 ---~~~~~v~~im~~~---~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----------------~~~~~~G  113 (124)
T cd04608          56 ---QPSDPVSKALYKQ---FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE----------------KQEKPIG  113 (124)
T ss_pred             ---CCCCcHHHHhhcc---ceecCCCCCHHHHHhhcccCCceEEEeccccccccccc----------------cccceEE
Confidence               1246899999865   889999999999999653          2445555443                3368999


Q ss_pred             eecHHHHHHHH
Q 015178          168 WLTQEDLIRYF  178 (412)
Q Consensus       168 iITq~DIv~~l  178 (412)
                      |||..|+++++
T Consensus       114 ivt~~Dl~~~~  124 (124)
T cd04608         114 IVTKIDLLSYI  124 (124)
T ss_pred             EEehhHhhhhC
Confidence            99999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.30  E-value=2.5e-11  Score=127.56  Aligned_cols=113  Identities=22%  Similarity=0.257  Sum_probs=95.2

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|..+ ++++.+++++.+|+++|.++++  +.+||+|++++++|+                   ++.+|++...+.    
T Consensus        92 im~~~-~v~i~~~~tv~ea~~~m~~~~~--~~lpVvd~~g~lvGi-------------------Vt~~DL~~~~~~----  145 (486)
T PRK05567         92 GVVTD-PVTVTPDTTLAEALALMARYGI--SGVPVVDENGKLVGI-------------------ITNRDVRFETDL----  145 (486)
T ss_pred             cccCC-CeEeCCCCCHHHHHHHHHHhCC--CEEEEEccCCEEEEE-------------------EEHHHhhhcccC----
Confidence            46677 9999999999999999999999  999999999999999                   556666431000    


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-CCceEeCCCCcHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-SEAILCHPWSSLMAV  356 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~~vvt~~~~~sl~~v  356 (412)
                                                                             ...+.++|+ ++++++.+++++.++
T Consensus       146 -------------------------------------------------------~~~V~dim~~~~~v~v~~~~sl~ea  170 (486)
T PRK05567        146 -------------------------------------------------------SQPVSEVMTKERLVTVPEGTTLEEA  170 (486)
T ss_pred             -------------------------------------------------------CCcHHHHcCCCCCEEECCCCCHHHH
Confidence                                                                   001234566 689999999999999


Q ss_pred             HHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          357 IMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       357 ~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      +++|.+++++.+||+|++|+++|+||+.||++.+.
T Consensus       171 l~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        171 LELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence            99999999999999999999999999999998863

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=2.1e-11  Score=102.25  Aligned_cols=118  Identities=25%  Similarity=0.334  Sum_probs=87.3

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.+++++.+|++.|.++++  +++||+|+ |+++|+                   ++..|++.........+..   
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~--~~i~V~~~-~~~~G~-------------------v~~~~l~~~~~~~~~~~~~---   57 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDI--SRLPVIEG-GKLVGI-------------------VTEKDIADALRSFRPLVRD---   57 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCC--CeeEEEEC-CEEEEE-------------------EchHHHHHhhhhhhhcccc---
Confidence            7789999999999999999988  99999997 999999                   4555555422100000000   


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                        ..+     .   .                               .....++.++|..++.++.+++++.+++++|.++
T Consensus        58 --~~~-----~---~-------------------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   96 (121)
T cd04633          58 --RHQ-----E---R-------------------------------RIRNLPVSDIMTRPVITIEPDTSVSDVASLMLEN   96 (121)
T ss_pred             --hhh-----h---h-------------------------------hhhccCHHHHccCCceEECCCCcHHHHHHHHHHc
Confidence              000     0   0                               0000123446777899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ |+++|+||..|+++
T Consensus        97 ~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          97 NIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             CCCcccEEEC-CEEEEEEEHHHhhc
Confidence            9999999998 89999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.29  E-value=8.4e-11  Score=120.97  Aligned_cols=160  Identities=11%  Similarity=0.095  Sum_probs=123.6

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      -|..++|+|+|....++++++. ++|++++++.+.+++.+++||++.+                     .++++||++..
T Consensus       187 ~l~~~~v~diMtpr~~v~~l~~-~~~~~e~~~~~~~~~~sR~PV~~~~---------------------~d~ivGiv~~k  244 (408)
T TIGR03520       187 SFGNTDTKQVMRPRLDIFALDI-ETSFSEIIPKIIENGYSRIPVYKET---------------------IDNITGVLYIK  244 (408)
T ss_pred             ccCCCEeeeeCCchHhEEEEEC-CCCHHHHHHHHHhCCCCEEEEEcCC---------------------CCceEEEEEHH
Confidence            4678999999976568999999 9999999999999999999999853                     35799999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      |++.++.+ +         ..+++++|.    +++.|.+++++.++++.|. ++.|..+|+++                .
T Consensus       245 Dll~~~~~-~---------~~~l~~~~~----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE----------------~  294 (408)
T TIGR03520       245 DLLPHLNK-K---------NFDWQSLLR----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE----------------Y  294 (408)
T ss_pred             HHHhHhcc-C---------CCCHHHHcC----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC----------------C
Confidence            99976532 0         134677775    2689999999999999999 77888888753                2


Q ss_pred             CCeeeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI  220 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m  220 (412)
                      |+..||||.+||++.+.... ++... ....+..   .... .+.+....++.+..+.|
T Consensus       295 G~~~GiVT~eDileeivgei~de~d~-~~~~i~~---~~~~-~~~v~G~~~l~~l~~~l  348 (408)
T TIGR03520       295 GGTSGLVTLEDIIEEIVGDISDEFDD-EDLIYSK---IDDN-NYVFEGKTSLKDFYKIL  348 (408)
T ss_pred             CCEEEEEEHHHHHHHHhCCCCCcCCc-CccceEE---eCCC-eEEEEeccCHHHHHHHh
Confidence            56889999999999885321 22211 1111221   2233 78899999999998888

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.29  E-value=2e-11  Score=127.09  Aligned_cols=112  Identities=21%  Similarity=0.278  Sum_probs=94.1

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC---CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE---GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG  274 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~  274 (412)
                      .+.++ ++++.+++++.+|+++|.++++  +++||+|++   ++++|+                   ++.+|++..... 
T Consensus        85 ~~~~~-~vtl~~~~tv~eal~~m~~~~~--s~lpVvd~~~~~~~lvGI-------------------Vt~rDL~~~~~~-  141 (450)
T TIGR01302        85 GIISD-PVTISPETTVADVLELMERKGI--SGIPVVEDGDMTGKLVGI-------------------ITKRDIRFVKDK-  141 (450)
T ss_pred             ceecC-ceEeCCCCCHHHHHHHHHHcCC--CEEEEEeCCCCCCeEEEE-------------------EEHHHHhhhhcC-
Confidence            35567 9999999999999999999999  999999987   799999                   556666431000 


Q ss_pred             CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-CCceEeCCCCcH
Q 015178          275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-SEAILCHPWSSL  353 (412)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~~vvt~~~~~sl  353 (412)
                                                                                ..++.++|+ .+++++.+++++
T Consensus       142 ----------------------------------------------------------~~~V~dvm~~~~~~~V~~~~sl  163 (450)
T TIGR01302       142 ----------------------------------------------------------GKPVSEVMTREEVITVPEGIDL  163 (450)
T ss_pred             ----------------------------------------------------------CCCHHHhhCCCCCEEECCCCcH
Confidence                                                                      001234566 489999999999


Q ss_pred             HHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       354 ~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      .++++.|.+++++++||||++|+++|+||+.||++.+
T Consensus       164 ~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       164 EEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             HHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            9999999999999999999999999999999999986

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=4.4e-11  Score=98.94  Aligned_cols=109  Identities=24%  Similarity=0.314  Sum_probs=86.8

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++++++++.+|++.|.+++.  +.+||+|++ +++|+                   ++..|++..+..+         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~~~G~-------------------v~~~dl~~~~~~~---------   51 (112)
T cd04802           3 VITVDPDTTVYEAANIMTENNI--GRLIVVDNE-KPVGI-------------------ITERDLVKKVVSR---------   51 (112)
T ss_pred             cEEECCCCCHHHHHHHHHHCCC--CEEEEEECC-EEEEE-------------------EEHHHHHHHHhhc---------
Confidence            7789999999999999999988  999999975 99999                   6677776532000         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                    . ..              .               ...++.++|..++.++.+++++.+++++|.++
T Consensus        52 --------------~-~~--------------~---------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   87 (112)
T cd04802          52 --------------N-LK--------------P---------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKH   87 (112)
T ss_pred             --------------c-CC--------------c---------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHc
Confidence                          0 00              0               00113456777899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||||++ +++|+||+.|+++
T Consensus        88 ~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          88 GIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             CCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            99999999975 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.28  E-value=4.5e-11  Score=122.96  Aligned_cols=125  Identities=17%  Similarity=0.249  Sum_probs=101.6

Q ss_pred             CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178          190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD  266 (412)
Q Consensus       190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D  266 (412)
                      ..++++  +|++  + +++++.++++.++++.|.+++.  +.+||.+++ ++++|+                   ++.+|
T Consensus       190 ~~~v~d--iMtpr~~-v~~l~~~~~~~e~~~~~~~~~~--sR~PV~~~~~d~ivGi-------------------v~~kD  245 (408)
T TIGR03520       190 NTDTKQ--VMRPRLD-IFALDIETSFSEIIPKIIENGY--SRIPVYKETIDNITGV-------------------LYIKD  245 (408)
T ss_pred             CCEeee--eCCchHh-EEEEECCCCHHHHHHHHHhCCC--CEEEEEcCCCCceEEE-------------------EEHHH
Confidence            445665  6885  5 9999999999999999999999  999999875 589999                   67888


Q ss_pred             hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178          267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL  346 (412)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt  346 (412)
                      ++.+...+    .             .                                         ...++| +++++
T Consensus       246 ll~~~~~~----~-------------~-----------------------------------------~l~~~~-~~~~~  266 (408)
T TIGR03520       246 LLPHLNKK----N-------------F-----------------------------------------DWQSLL-REPYF  266 (408)
T ss_pred             HHhHhccC----C-------------C-----------------------------------------CHHHHc-CCCeE
Confidence            87543100    0             0                                         011234 46789


Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178          347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM  397 (412)
Q Consensus       347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~  397 (412)
                      +++++++.+++++|.+++.|..+|||+.|.++||||..||++.+..+....
T Consensus       267 Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de  317 (408)
T TIGR03520       267 VPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDE  317 (408)
T ss_pred             eCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCc
Confidence            999999999999999999999999999999999999999999998765543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.28  E-value=4.4e-11  Score=117.78  Aligned_cols=127  Identities=18%  Similarity=0.311  Sum_probs=101.6

Q ss_pred             CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178          190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD  266 (412)
Q Consensus       190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D  266 (412)
                      ..++++  +|++  + ++++.+++++.++++.+.+++.  +.+||++++ ++++|+                   ++.+|
T Consensus        66 ~~~V~d--iMtpr~~-i~~l~~~~sl~e~~~~i~~~~~--sr~PV~~~~~d~iiGi-------------------v~~kD  121 (292)
T PRK15094         66 DQRVRD--IMIPRSQ-MITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHIEGI-------------------LMAKD  121 (292)
T ss_pred             CCEEeE--EccchHH-EEEEeCCCCHHHHHHHHHhcCC--cEEEEecCCCCcEEEE-------------------EEHHH
Confidence            456665  6876  5 9999999999999999999998  999999876 699999                   67788


Q ss_pred             hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178          267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL  346 (412)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt  346 (412)
                      ++.+.....                                         .               ...+.++|+ ++++
T Consensus       122 ll~~~~~~~-----------------------------------------~---------------~~~l~~l~r-~~~~  144 (292)
T PRK15094        122 LLPFMRSDA-----------------------------------------E---------------AFSMDKVLR-QAVV  144 (292)
T ss_pred             HHhHhhccC-----------------------------------------C---------------cCCHHHHcC-CCcC
Confidence            765321000                                         0               000123454 4568


Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178          347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM  397 (412)
Q Consensus       347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~  397 (412)
                      +.+++++.+++++|.+++.|.++|||+.|.++|+||+.||+..+...+...
T Consensus       145 V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de  195 (292)
T PRK15094        145 VPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDE  195 (292)
T ss_pred             cCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccc
Confidence            999999999999999999999999999899999999999999999766543

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=5.9e-11  Score=99.17  Aligned_cols=111  Identities=16%  Similarity=0.232  Sum_probs=92.3

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      .+.+++. ++|+.+|++.|.+++...+||+|.+                      ++++|+++..|+.+.+....     
T Consensus         2 ~~~~v~~-~~~l~~a~~~~~~~~~~~~~Vvd~~----------------------g~~~G~vt~~dl~~~~~~~~-----   53 (114)
T cd04619           2 RLAKIDV-NATLQRAAKILGEPGIDLVVVCDPH----------------------GKLAGVLTKTDVVRQMGRCG-----   53 (114)
T ss_pred             ceEEECC-CCcHHHHHHHHHhcCCCEEEEECCC----------------------CCEEEEEehHHHHHHHhhcC-----
Confidence            3677888 9999999999999999999999963                      57999999999998765311     


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                      ......++.++|...   +.++.+++++.+|++.|. ++.+++||+++                +++++|+||+.|+++
T Consensus        54 ~~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~~~~~Gvi~~~dl~~  113 (114)
T cd04619          54 GPGCTAPVENVMTRA---VVSCRPGDLLHDVWQVMKQRGLKNIPVVDE----------------NARPLGVLNARDALK  113 (114)
T ss_pred             CCcccCCHHHHhcCC---CeeECCCCCHHHHHHHHHHcCCCeEEEECC----------------CCcEEEEEEhHhhcc
Confidence            012246799999755   889999999999999999 89999999863                256899999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=4.9e-11  Score=100.30  Aligned_cols=115  Identities=18%  Similarity=0.177  Sum_probs=92.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ +.++.+|++.|.++++.++||+|.                      +++++|+|+..||.+.+.....    
T Consensus         2 ~~~~~~~-~~~~~~a~~~~~~~~~~~~~V~d~----------------------~~~~~Givt~~dl~~~~~~~~~----   54 (118)
T cd04617           2 PPVVVRE-NTSVYDAIVTLFLEDVGSLFVVDE----------------------DGDLVGVVSRKDLLKASIGGAD----   54 (118)
T ss_pred             CCEEECC-CCCHHHHHHHHHHcCCCEEEEEcC----------------------CCCEEEEEEHHHHHHHHHcCCC----
Confidence            5688999 999999999999999999999995                      3579999999999987653111    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                        ....+++++|... ..+.++++++++.++++.|. ++++++||+++..             ..++++|+||++|+++
T Consensus        55 --~~~~~~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~-------------~~~~l~Gvit~~~l~~  117 (118)
T cd04617          55 --LQKVPVGVIMTRM-PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVD-------------EGLEVIGRITKTNITK  117 (118)
T ss_pred             --ccCCCHHHHhCCC-CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCC-------------ccceEEEEEEhhheec
Confidence              1135688888631 12789999999999999999 8999999986421             0157899999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.27  E-value=4.3e-11  Score=125.65  Aligned_cols=113  Identities=12%  Similarity=0.109  Sum_probs=93.4

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC---CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE---GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG  274 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~  274 (412)
                      .+..+ ++++++++++.+|+++|.++++  +++||+|++   |+++|+                   ++..|++. ... 
T Consensus       101 g~i~d-pvtv~pd~tv~eA~~lm~~~~~--s~vpVvd~~~~~gkLvGI-------------------Vt~~DL~~-~~~-  156 (495)
T PTZ00314        101 GFIMD-PYVLSPNHTVADVLEIKEKKGF--SSILITVDGKVGGKLLGI-------------------VTSRDIDF-VKD-  156 (495)
T ss_pred             ccccC-CeecCCCCCHHHHHHHHHHcCC--cEEEEEeCCccCCeEEEE-------------------EEHHHHhh-ccc-
Confidence            34566 8999999999999999999999  999999974   799999                   55666642 100 


Q ss_pred             CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeCCCCc
Q 015178          275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCHPWSS  352 (412)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~~~~s  352 (412)
                        .                                                       ..++.++|++  ++++++++++
T Consensus       157 --~-------------------------------------------------------~~~V~diMt~~~~lvtv~~~~s  179 (495)
T PTZ00314        157 --K-------------------------------------------------------STPVSEVMTPREKLVVGNTPIS  179 (495)
T ss_pred             --C-------------------------------------------------------CCCHHHhhCCcCCceEeCCCCC
Confidence              0                                                       0012346766  8999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          353 LMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       353 l~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      +.+++++|.+++++++||||++++++|+||++||++...
T Consensus       180 l~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        180 LEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             HHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence            999999999999999999999999999999999998754

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.26  E-value=4.8e-11  Score=97.96  Aligned_cols=107  Identities=21%  Similarity=0.329  Sum_probs=83.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.++++  +.+||+|+ |+++|+                   ++..|++.......        
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~dl~~~~~~~~--------   52 (110)
T cd04609           3 VVSVAPDDTVSQAIERMREYGV--SQLPVVDD-GRVVGS-------------------IDESDLLDALIEGK--------   52 (110)
T ss_pred             cEEECCCCcHHHHHHHHHHcCC--ceeeEeeC-CeeEEE-------------------EeHHHHHHHHhccc--------
Confidence            7789999999999999999998  99999998 999999                   66777765321000        


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                       .                  ++           ..++.++|..+++++.+++++.+++++|.+ 
T Consensus        53 -----------------~------------------~~-----------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-   85 (110)
T cd04609          53 -----------------A------------------KF-----------SLPVREVMGEPLPTVDPDAPIEELSELLDR-   85 (110)
T ss_pred             -----------------c------------------cc-----------CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-
Confidence                             0                  00           001234567788999999999999988887 


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      . +.+||||++|+++|+||++||++
T Consensus        86 ~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          86 G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             C-CceeEEecCCeEEEEEeHHHhhc
Confidence            3 45789998899999999999986

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=8.2e-11  Score=95.66  Aligned_cols=110  Identities=27%  Similarity=0.408  Sum_probs=88.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.++++.|.+++.  +.+||+|++++++|+                   ++.+|++.+....         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~G~-------------------v~~~~l~~~~~~~---------   52 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGI--SGLPVVDDDGRLVGI-------------------VTERDLLRALAEG---------   52 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCC--ceEEEECCCCCEEEE-------------------EeHHHHHHHHHhc---------
Confidence            7788999999999999999988  999999998999999                   6677776532100         


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                          .           ..                  +      .      ..+.++|..+++++.+++++.++++.|.++
T Consensus        53 ----~-----------~~------------------~------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (113)
T cd02205          53 ----G-----------LD------------------P------L------VTVGDVMTRDVVTVSPDTSLEEAAELMLEH   87 (113)
T ss_pred             ----c-----------CC------------------c------c------ccHHHHhcCCceecCCCcCHHHHHHHHHHc
Confidence                0           00                  0      0      001234667889999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|++|+++|++|..|+++
T Consensus        88 ~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          88 GIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             CCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            9999999999999999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=9.9e-11  Score=97.55  Aligned_cols=111  Identities=16%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++++.+|++.|.++++..+||.+.+                     .++++|+++..|+++++...+.    
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~~G~v~~~dl~~~~~~~~~----   55 (114)
T cd04630           2 NVVTIDG-LATVAEALQLMKEHGVSSLVVEKRR---------------------ESDAYGIVTMRDILKKVVAEGR----   55 (114)
T ss_pred             CcEEECC-CCcHHHHHHHHHHcCCCEEEEEECC---------------------CCcEEEEEehHHHHHHHHhCCC----
Confidence            5788999 9999999999999999999999852                     1589999999999987654211    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                       .....++.++|...   ++++.+++++.++++.|. ++.+++||+++                 ++++|+||..|+++
T Consensus        56 -~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----------------~~~~Gvi~~~dl~~  113 (114)
T cd04630          56 -DPDRVNVYEIMTKP---LISVSPDMDIKYCARLMERTNIRRAPVVEN-----------------NELIGIISLTDIFL  113 (114)
T ss_pred             -CCCccCHHHHhcCC---CeeECCCCCHHHHHHHHHHcCCCEeeEeeC-----------------CEEEEEEEHHHhhc
Confidence             11235799999644   889999999999999999 79999999753                 46889999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.25  E-value=2e-10  Score=113.08  Aligned_cols=162  Identities=12%  Similarity=0.103  Sum_probs=122.5

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      |..++|+++|....++++++. ++|++++++.+.+++.+.+||++.+                     .++++|+|+..|
T Consensus        64 l~~~~V~diMtpr~~i~~l~~-~~sl~e~~~~i~~~~~sr~PV~~~~---------------------~d~iiGiv~~kD  121 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKR-NQTLDECLDVIIESAHSRFPVISED---------------------KDHIEGILMAKD  121 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeC-CCCHHHHHHHHHhcCCcEEEEecCC---------------------CCcEEEEEEHHH
Confidence            567899999974447999999 9999999999999999999999853                     257999999999


Q ss_pred             HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178           85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND  163 (412)
Q Consensus        85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~  163 (412)
                      ++.++.....        ..++.++|..    .+.+.+++++.++++.|. ++.|.++|+++                .|
T Consensus       122 ll~~~~~~~~--------~~~l~~l~r~----~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe----------------~G  173 (292)
T PRK15094        122 LLPFMRSDAE--------AFSMDKVLRQ----AVVVPESKRVDRMLKEFRSQRYHMAIVIDE----------------FG  173 (292)
T ss_pred             HHhHhhccCC--------cCCHHHHcCC----CcCcCCCCcHHHHHHHHHhcCCEEEEEEeC----------------CC
Confidence            9976532110        1347788853    458999999999999999 88999999863                25


Q ss_pred             CeeeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178          164 SEYCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI  220 (412)
Q Consensus       164 ~~v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m  220 (412)
                      ..+|+||.+||++.+.... ++........+..   .... .+.+...+++.+..+.+
T Consensus       174 ~viGiVTleDIle~ivGei~de~d~~~~~~i~~---~~~~-~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        174 GVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ---LSRH-TWTVRALASIEDFNEAF  227 (292)
T ss_pred             CEEEEeEHHHHHHHHhCCCccccccccccccEE---eCCC-eEEEEeccCHHHHHHHh
Confidence            6889999999999886532 2222111112222   2233 78899999998777776

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.25  E-value=5.5e-11  Score=118.16  Aligned_cols=121  Identities=17%  Similarity=0.214  Sum_probs=102.9

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      .++|+++|..+++++++++ ++|+.+|++.|.+++...+||+|.                      +++++|+|+..|+.
T Consensus       196 ~~~V~~im~~~~~~~~v~~-~~sv~~a~~~~~~~~~~~~~Vvd~----------------------~g~~iG~vt~~dl~  252 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVAL-TASVMDAMLELSRTGLGLVAVCDA----------------------QQQVQGVFTDGDLR  252 (321)
T ss_pred             HhHHHHHhccCCCCcEeCC-CCCHHHHHHHHHHcCCCEEEEEcC----------------------CCcEEEEecHHHHH
Confidence            6789999964445999999 999999999999999999999995                      36899999999998


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      +.+....       ....++.++|...   +.++.+++++.+|++.|. +++.++||+++                ++++
T Consensus       253 ~~~~~~~-------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~~~l  306 (321)
T PRK11543        253 RWLVGGG-------ALTTPVNEAMTRG---GTTLQAQSRAIDAKEILMKRKITAAPVVDE----------------NGKL  306 (321)
T ss_pred             HHHhCCC-------CcCCcHHHhcCCC---CEEECCCCCHHHHHHHHHHcCCCEEEEEcC----------------CCeE
Confidence            8765321       1246799999755   789999999999999999 99999999863                2468


Q ss_pred             eeeecHHHHHH
Q 015178          166 YCWLTQEDLIR  176 (412)
Q Consensus       166 v~iITq~DIv~  176 (412)
                      +|+||+.|+++
T Consensus       307 vGvIt~~di~~  317 (321)
T PRK11543        307 TGAINLQDFYQ  317 (321)
T ss_pred             EEEEEHHHHHh
Confidence            99999999986

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=8.9e-11  Score=102.64  Aligned_cols=140  Identities=21%  Similarity=0.278  Sum_probs=89.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ++++.+++++.+|++.|.+.++  +++||+|+ |+++|+                   ++.+|++.++......+.+...
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~Vvd~-~~~~G~-------------------v~~~dl~~~~~~~~~~~~~~~~   60 (143)
T cd04634           3 PITCNADDTISDAARLLRENKI--SGAPVLDG-GKLVGI-------------------VSESDILKLLVTHDPSGNLWLP   60 (143)
T ss_pred             cEEecCCCCHHHHHHHHHHcCC--CcceEeEC-CeEEEE-------------------ecHHHHHHHHHhccCccccccC
Confidence            7889999999999999999998  99999998 999999                   5566665433110000000000


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                      -........+..++.+-...             .         ........++.++|..++.++.+++++.+++..|.++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~-------------~---------~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~  118 (143)
T cd04634          61 SPLELIELPLREFINWEETK-------------R---------ALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRH  118 (143)
T ss_pred             CcceeeeccchheeehHHHH-------------H---------HHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHc
Confidence            00000000000000000000             0         0000001224567788899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ |+++|+||..|+++
T Consensus       119 ~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634         119 KIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            9999999998 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.23  E-value=1.1e-10  Score=121.84  Aligned_cols=122  Identities=22%  Similarity=0.158  Sum_probs=104.0

Q ss_pred             ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178            3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM   82 (412)
Q Consensus         3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~   82 (412)
                      ..++..+++++|.  ++++++++ ++|+.+|++.|.+++++++||+|.                      +++++|||+.
T Consensus        84 ~~l~~VKv~~iMi--~~pvtv~~-d~tv~eA~~~m~~~~~s~l~VVD~----------------------~gklvGIVT~  138 (479)
T PRK07807         84 EVVAWVKSRDLVF--DTPVTLSP-DDTVGDALALLPKRAHGAVVVVDE----------------------EGRPVGVVTE  138 (479)
T ss_pred             HHHhhcccccccc--cCCeEECC-CCCHHHHHHHHHhcCCceEEEECC----------------------CCeEEEEEeH
Confidence            4567788899985  67899999 999999999999999999999995                      3689999999


Q ss_pred             HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccC
Q 015178           83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFH  161 (412)
Q Consensus        83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~  161 (412)
                      .|+...  .          ...+|+++|+..   +++++++++|.+|+++|. ++++++||+++                
T Consensus       139 rDL~~~--~----------~~~~V~diMt~~---~itV~~d~sL~eAl~lM~~~~i~~LPVVD~----------------  187 (479)
T PRK07807        139 ADCAGV--D----------RFTQVRDVMSTD---LVTLPAGTDPREAFDLLEAARVKLAPVVDA----------------  187 (479)
T ss_pred             HHHhcC--c----------cCCCHHHhccCC---ceEECCCCcHHHHHHHHHhcCCCEEEEEcC----------------
Confidence            998321  0          125799999865   899999999999999999 99999999863                


Q ss_pred             CCCeeeeecHHHHHHHHHH
Q 015178          162 NDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       162 ~~~~v~iITq~DIv~~l~~  180 (412)
                      +++++|+||+.||++....
T Consensus       188 ~g~lvGIIT~~DIl~~~~~  206 (479)
T PRK07807        188 DGRLVGVLTRTGALRATIY  206 (479)
T ss_pred             CCeEEEEEEHHHHHHHhhC
Confidence            2578999999999998764

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.23  E-value=2e-10  Score=116.87  Aligned_cols=195  Identities=20%  Similarity=0.208  Sum_probs=147.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++++.+.+ ..++-+|...|+++++.++||.|.+                     .+.+.+++|..=|++|+........
T Consensus       162 ~~~~~i~p-~~s~l~~~~~l~~~~~~rvpv~d~~---------------------~~~v~~ilt~~rIl~~l~~~~~~~~  219 (381)
T KOG1764|consen  162 PPFVSISP-ESSLLDAVLLLIKSRIHRVPVIDPE---------------------TGEVLYILTQRRILKFLWLNGRLLP  219 (381)
T ss_pred             CCceeecC-cHHHHHHHHHHHhCCccceeeeccc---------------------ccceeeehhHHHHHHHHHHhhcccc
Confidence            45599999 9999999999999999999999943                     2589999999999999875322222


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                      ....+..++.++---..+.+..+..++++.+|+..|. +++..+||++.                .+..+|.++..|+..
T Consensus       220 ~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~----------------~g~~v~~~s~~Dv~~  283 (381)
T KOG1764|consen  220 LPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE----------------NGKKVGNYSRFDVIH  283 (381)
T ss_pred             cHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC----------------CCceecceehhhhhh
Confidence            3344556666654211234789999999999999999 99999999864                244589999999988


Q ss_pred             HHHHc-cCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhH
Q 015178          177 YFLNC-IGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETV  255 (412)
Q Consensus       177 ~l~~~-~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~  255 (412)
                      ...+. ...+.....+......-+.+++|+++.++.++..++..|..+++  ..+.|||++|+++|+             
T Consensus       284 l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~v--HRl~VVd~~~~l~Gv-------------  348 (381)
T KOG1764|consen  284 LAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRV--HRLWVVDEDGVLVGV-------------  348 (381)
T ss_pred             hhhcCccCccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCc--eEEEEEcCCCcEEEE-------------
Confidence            77653 11121110011111111233459999999999999999999999  999999999999999             


Q ss_pred             HHhhhhcCHhhhhhhh
Q 015178          256 AAAMVTLSAGDLMAYM  271 (412)
Q Consensus       256 ~~~~~~ls~~Dl~~~~  271 (412)
                            +|.+|++.++
T Consensus       349 ------vSLsDil~~l  358 (381)
T KOG1764|consen  349 ------ISLSDILSYL  358 (381)
T ss_pred             ------eeHHHHHHHH
Confidence                  6688888765

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=1.2e-10  Score=99.04  Aligned_cols=119  Identities=22%  Similarity=0.313  Sum_probs=92.5

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhccc---C
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEEN---L   95 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~---l   95 (412)
                      +++.+++ +.|+.+|++.|.++++..+||+++                      +++++|+++..|+...+.....   .
T Consensus         2 ~~~~i~~-~~~~~~~~~~~~~~~~~~~~Vv~~----------------------~~~~~G~it~~dl~~~~~~~~~~~~~   58 (128)
T cd04632           2 DVITVRE-DDSVGKAINVLREHGISRLPVVDD----------------------NGKLTGIVTRHDIVDFVVRDRDKART   58 (128)
T ss_pred             CceEeCC-CCCHHHHHHHHHHcCCCEEEEECC----------------------CCcEEEEEEHHHHHHHHhhhhhhcch
Confidence            4678888 999999999999999999999996                      3689999999999876543110   0


Q ss_pred             C----CcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeec
Q 015178           96 L----NPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLT  170 (412)
Q Consensus        96 ~----~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iIT  170 (412)
                      .    ........++.++|...   ++++.+++++.++++.|. ++.+.+||...+              ++++++|+||
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~--------------~~~~~~Gvit  121 (128)
T cd04632          59 GDRSGEKERMLDLPVYDAMSSP---VITASPNDSVRDAVDRMLENDDSSVVVVTPD--------------DDTKVVGILT  121 (128)
T ss_pred             hhhhhhhhhhccCcHHHHhcCC---CceECCCCcHHHHHHHHHhCCCCeEeEeccC--------------CCCcEEEEEE
Confidence            0    01112346788999744   889999999999999999 788888886421              2367899999


Q ss_pred             HHHHHHH
Q 015178          171 QEDLIRY  177 (412)
Q Consensus       171 q~DIv~~  177 (412)
                      ..|++++
T Consensus       122 ~~di~~~  128 (128)
T cd04632         122 KKDVLRA  128 (128)
T ss_pred             hHhhhcC
Confidence            9999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.23  E-value=8.2e-11  Score=98.53  Aligned_cols=119  Identities=28%  Similarity=0.375  Sum_probs=88.6

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++++++++.+|++.|.+.+.  +.+||+|++|+++|+                   ++..|++.....          
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~~l~~~~~~----------   51 (121)
T cd04584           3 VVTITPTTTIAEALELMREHKI--RHLPVVDEEGRLVGI-------------------VTDRDLRDASPS----------   51 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHcCC--CcccEECCCCcEEEE-------------------EEHHHHHHHhhh----------
Confidence            7789999999999999999988  999999999999999                   556665542100          


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                         .+........ ...                               ...++.++|..+++++.+++++.++++.|.++
T Consensus        52 ---~~~~~~~~~~-~~~-------------------------------~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~   96 (121)
T cd04584          52 ---PFTTLSEHEL-YLL-------------------------------LKMPVKEIMTKDVITVHPLDTVEEAALLMREH   96 (121)
T ss_pred             ---hcccchhhhh-hhh-------------------------------cCcCHHHHhhCCCeEECCCCcHHHHHHHHHHc
Confidence               0000000000 000                               00113456777899999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      +.+++||+|+ |+++|+||..||+++
T Consensus        97 ~~~~~~V~~~-~~~~Gvv~~~di~~~  121 (121)
T cd04584          97 RIGCLPVVED-GRLVGIITETDLLRT  121 (121)
T ss_pred             CCCeEEEeeC-CEEEEEEEHHHhhcC
Confidence            9999999998 899999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.22  E-value=3.8e-11  Score=123.82  Aligned_cols=123  Identities=19%  Similarity=0.235  Sum_probs=105.2

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      +.+++++.  .+.++|++ .+|+.+|...|.++|++++-|++.+                      +...||||..|+..
T Consensus       149 trv~~~~~--~~~~~v~~-~~~i~~aa~km~~~gv~s~v~l~~~----------------------~~~~GIvT~~dl~~  203 (610)
T COG2905         149 TRVGEVKT--LPAVTVSP-QASIQDAARKMKDEGVSSLVVLDDS----------------------GPLLGIVTRKDLRS  203 (610)
T ss_pred             HHHHHHhc--CCCcccCc-cCcHHHHHHHHHhcCCCeEEEEcCC----------------------CCccceeehHHHHH
Confidence            55777774  56899999 9999999999999999999999853                      56999999999999


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      .+...+.      ....||+++|+.   |+++|++++-+.+||-+|. ++|||+||.                 ++|+++
T Consensus       204 ~v~~~g~------~~~~~V~evmT~---p~~svd~~~~~feAml~m~r~~I~hl~V~-----------------e~gq~~  257 (610)
T COG2905         204 RVIADGR------SKTQKVSEVMTS---PVISVDRGDFLFEAMLMMLRNRIKHLPVT-----------------EDGQPL  257 (610)
T ss_pred             HHHhcCC------Ccccchhhhhcc---CceeecCcchHHHHHHHHHHhCCceeeee-----------------cCCeee
Confidence            8764322      235789999994   5999999999999999999 999999997                 347889


Q ss_pred             eeecHHHHHHHHHHc
Q 015178          167 CWLTQEDLIRYFLNC  181 (412)
Q Consensus       167 ~iITq~DIv~~l~~~  181 (412)
                      ||||.+||++.+..|
T Consensus       258 Gilt~~dIl~l~s~~  272 (610)
T COG2905         258 GILTLTDILRLFSQN  272 (610)
T ss_pred             EEeeHHHHHHhhCCC
Confidence            999999999988654

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.22  E-value=9.6e-11  Score=97.09  Aligned_cols=99  Identities=20%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL  280 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~  280 (412)
                      +..+.+++++.++.+.|.+.+.  +.+||+|+   +|+++|+                   ++..|+.....        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~~~~G~-------------------v~~~dl~~~~~--------   54 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSH--NGFPVVDSTEESPRLVGY-------------------ILRSQLVVALK--------   54 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCC--CCcceEcCCCCCCEEEEE-------------------EeHHHHHHHHH--------
Confidence            7788999999999999999988  99999998   6899999                   56666654210        


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178          281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA  360 (412)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m  360 (412)
                                                                               .+|..++.++.+++++.++++.|
T Consensus        55 ---------------------------------------------------------~~m~~~~~~v~~~~~l~~~~~~~   77 (105)
T cd04591          55 ---------------------------------------------------------NYIDPSPFTVSPRTSLEKVHQLF   77 (105)
T ss_pred             ---------------------------------------------------------HhccCCCceECCCCcHHHHHHHH
Confidence                                                                     02456688999999999999999


Q ss_pred             HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      .+++.+++||++ +|+++|+||++|++++
T Consensus        78 ~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          78 RKLGLRHLLVVD-EGRLVGIITRKDLLKA  105 (105)
T ss_pred             HHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence            999999999996 5899999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=2e-10  Score=94.64  Aligned_cols=111  Identities=20%  Similarity=0.233  Sum_probs=92.0

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++++++. +.++.+|++.|.+++...+||.+.                      +++++|+++..|++..+.....    
T Consensus         2 ~~~~i~~-~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~~Giv~~~~l~~~~~~~~~----   54 (113)
T cd04623           2 DVITVRP-DATVAEAAKLMAEKNIGAVVVVDD----------------------GGRLVGIFSERDIVRKVALRGA----   54 (113)
T ss_pred             CCEEECC-CCcHHHHHHHHHHcCCCeEEEECC----------------------CCCEEEEEehHHHHHHHhhcCC----
Confidence            5678899 999999999999999999999995                      3589999999999987764211    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                       .....++.++|...   +.++.+++++.++++.|. ++.+++||+++                 ++.+|+||..|+++|
T Consensus        55 -~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-----------------~~~~Gvit~~di~~~  113 (113)
T cd04623          55 -SALDTPVSEIMTRN---VITVTPDDTVDEAMALMTERRFRHLPVVDG-----------------GKLVGIVSIGDVVKA  113 (113)
T ss_pred             -CccccCHHHhcCCC---cEEECCCCcHHHHHHHHHHcCCCEeEEEeC-----------------CEEEEEEEHHHhhcC
Confidence             11135688998654   889999999999999999 88899998752                 468899999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.21  E-value=2e-10  Score=96.70  Aligned_cols=117  Identities=18%  Similarity=0.230  Sum_probs=93.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      +++++++. ++++.+|++.|.+++...+||++.                      .++++|+++..|+..++........
T Consensus         2 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~~Giv~~~~l~~~~~~~~~~~~   58 (124)
T cd04600           2 RDVVTVTP-DTSLEEAWALLRRHRIKALPVVDG----------------------DRRLVGIVTQRDLLRHARPDGRRPL   58 (124)
T ss_pred             CCcEEeCC-CCCHHHHHHHHHHcCCceeeEECC----------------------CCCEEEEEEHHHHHhhhcccccchh
Confidence            57889999 999999999999999999999985                      3689999999999887653211000


Q ss_pred             ---c-ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHH
Q 015178           98 ---P-ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQE  172 (412)
Q Consensus        98 ---~-~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~  172 (412)
                         . ...-..+++++|...   +.++.+++++.++++.|. ++.+++||+++                +++.+|+||+.
T Consensus        59 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~g~~~Gvit~~  119 (124)
T cd04600          59 RGRLRGRDKPETVGDIMSPP---VVTVRPDTPIAELVPLLADGGHHHVPVVDE----------------DRRLVGIVTQT  119 (124)
T ss_pred             hhhhhcccccccHHHhccCC---CeeeCCCCcHHHHHHHHHhcCCCceeEEcC----------------CCCEEEEEEhH
Confidence               0 001134688888755   889999999999999999 88999999863                35789999999


Q ss_pred             HHHH
Q 015178          173 DLIR  176 (412)
Q Consensus       173 DIv~  176 (412)
                      |+++
T Consensus       120 di~~  123 (124)
T cd04600         120 DLIA  123 (124)
T ss_pred             Hhhc
Confidence            9975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=1.5e-10  Score=96.18  Aligned_cols=115  Identities=19%  Similarity=0.205  Sum_probs=90.3

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++++++. ++|+.+|++.|.++++..+||+|.                      .++++|+++..|+++++...... +.
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~Giv~~~dl~~~~~~~~~~-~~   57 (116)
T cd04643           2 EVAYVQD-TNTLRHALLVLTKHGYSAIPVLDK----------------------EGKYVGTISLTDILWKLKGLENL-DL   57 (116)
T ss_pred             CcEEECC-CCcHHHHHHHHHHCCCceeeeECC----------------------CCcEEEEEeHHHHHHHhhccCch-hH
Confidence            4788999 999999999999999999999995                      36899999999999987642110 00


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                      ....+.+++++|...   +.++.+++++.+|++.|... ..+||+++                +++.+|+||+.|++++
T Consensus        58 ~~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~~~~~-~~~~Vv~~----------------~~~~~Gvit~~dil~~  116 (116)
T cd04643          58 ERLVDLKVIDVMNTD---VPVIIDDADIEEILHLLIDQ-PFLPVVDD----------------DGIFIGIITRREILKA  116 (116)
T ss_pred             HHHhCCcHHHHhcCC---CceecCCCCHHHHHHHHhcC-CceeEEeC----------------CCeEEEEEEHHHhhcC
Confidence            001256799999755   88999999999999999842 35787642                3578899999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.20  E-value=1.1e-10  Score=125.03  Aligned_cols=130  Identities=18%  Similarity=0.184  Sum_probs=107.8

Q ss_pred             ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178            3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM   82 (412)
Q Consensus         3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~   82 (412)
                      ..+..++++|+|.  ++.+++++ ++++.+|++.|.+++...+||+|+                      +++++|+++.
T Consensus       442 ~~L~~~~V~dim~--~~~~~v~~-~~tl~ea~~~l~~~~~~~~~VvD~----------------------~g~lvGiVt~  496 (574)
T PRK01862        442 ERLRTTQMRELIQ--PAQTVVPP-TASVADMTRVFLEYPVKYLYVVDD----------------------DGRFRGAVAL  496 (574)
T ss_pred             hHHhhCcHHHHhc--CCCceeCC-CCCHHHHHHHHHhCCCceEEEEcC----------------------CCeEEEEEEH
Confidence            4577889999994  56788999 999999999999999999999995                      3689999999


Q ss_pred             HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccC
Q 015178           83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFH  161 (412)
Q Consensus        83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~  161 (412)
                      .|+.+.+...+.      ....++.++|...   +.++++++++.+|++.|. ++.+++||++++              +
T Consensus       497 ~dL~~~l~~~~~------~~~~~v~dim~~~---~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~--------------~  553 (574)
T PRK01862        497 KDITSDLLDKRD------TTDKTAADYAHTP---FPLLTPDMPLGDALEHFMAFQGERLPVVESE--------------A  553 (574)
T ss_pred             HHHHHHhhcccc------cccchHHHhccCC---CeeECCCCCHHHHHHHHHhcCCCeeeeEeCC--------------C
Confidence            999886643211      1135789999755   789999999999999999 899999998642              1


Q ss_pred             CCCeeeeecHHHHHHHHHH
Q 015178          162 NDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       162 ~~~~v~iITq~DIv~~l~~  180 (412)
                      +++.+|+||+.|+++.+.+
T Consensus       554 ~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        554 SPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCeEEEEEEHHHHHHHHHh
Confidence            2468999999999998764

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=9.8e-11  Score=99.60  Aligned_cols=112  Identities=17%  Similarity=0.213  Sum_probs=84.8

Q ss_pred             eEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCC----
Q 015178          117 IRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQ----  191 (412)
Q Consensus       117 ~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~----  191 (412)
                      +.++++++++.++++.|. +++..+||+++                +++.+|++|+.|+.++......... ....    
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~----------------~~~~~Giv~~~dl~~~~~~~~~~~~-~~~~~~~~   65 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNISGLPVVDE----------------KGKLIGNISASDLKGLLLSPDDLLL-YRTITFKE   65 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCCCcccEECC----------------CCcEEEEEEHHHhhhhhcCcchhhc-ccchhhhh
Confidence            678999999999999998 78899998753                3678999999999987643211100 0000    


Q ss_pred             ---Cc-ccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCcc
Q 015178          192 ---PI-NSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSF  248 (412)
Q Consensus       192 ---~i-~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl  248 (412)
                         .+ .....+..+ +.++.+++++.+|+++|.++++  +.+||+|++|+++|+||..||
T Consensus        66 ~~~~~~~~~~~~~~~-~~~v~~~~~l~~a~~~~~~~~~--~~l~Vvd~~~~~~Giit~~di  123 (126)
T cd04642          66 LSEKFTDSDGVKSRP-LITCTPSSTLKEVITKLVANKV--HRVWVVDEEGKPIGVITLTDI  123 (126)
T ss_pred             hhhhcccccccccCC-CeEECCCCcHHHHHHHHHHhCC--cEEEEECCCCCEEEEEEHHHH
Confidence               01 112345666 8999999999999999999999  999999998999999554443

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.19  E-value=2.9e-10  Score=94.76  Aligned_cols=112  Identities=17%  Similarity=0.220  Sum_probs=91.7

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +..++++ ++++.+|++.|.++++..+||.|.                      +++++|+++..||...+.+...    
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~dl~~~~~~~~~----   54 (115)
T cd04593           2 PPPVLSA-TTPLREAAEQLIESKHGSALVVDR----------------------DGGVVGIITLPDLLRALEADEA----   54 (115)
T ss_pred             CCcEeCC-CCCHHHHHHHHHhCCCcEEEEEcC----------------------CCCEEEEEEHHHHHHHHhcccc----
Confidence            4677888 999999999999999999999995                      3689999999999987654211    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                        ....+++++|...   +.++.+++++.++++.|. ++.+++||+++.              ..++++|+||++||++
T Consensus        55 --~~~~~~~~~~~~~---~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~--------------~~~~~~Gvit~~di~~  114 (115)
T cd04593          55 --GEPSAVDEVATPP---LLTVHPDEPLAHALDRMASRGLRQLPVVDRG--------------NPGQVLGLLTRENVLL  114 (115)
T ss_pred             --cccccHHHhccCC---ceEECCCCCHHHHHHHHHHcCCceeeEEeCC--------------CCCeEEEEEEhHHhhc
Confidence              1134588888755   889999999999999999 899999998642              1257899999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.18  E-value=1.7e-10  Score=96.46  Aligned_cols=112  Identities=21%  Similarity=0.272  Sum_probs=86.1

Q ss_pred             EEEEeCCCcHHHHHHHHHhcC-CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSH-INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR  282 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~  282 (412)
                      +.++++++++.+|++.|.+.+ +  +.+||+|+ |+++|+                   ++..|++.....         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vvd~-~~~~G~-------------------v~~~~l~~~~~~---------   51 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDPDL--SALAVVDD-GRPVGL-------------------IMREALMELLST---------   51 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCCCc--cEEEEEEC-CeeEEE-------------------EEHHHHHHHHhc---------
Confidence            677899999999999998876 7  99999999 999999                   567777643210         


Q ss_pred             HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178          283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA  362 (412)
Q Consensus       283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~  362 (412)
                          ..     ..  +...                               ...+.++|..++++|.+++++.+++..|.+
T Consensus        52 ----~~-----~~--~~~~-------------------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~   89 (119)
T cd04598          52 ----PY-----GR--ALYG-------------------------------KKPVSEVMDPDPLIVEADTPLEEVSRLATG   89 (119)
T ss_pred             ----hh-----hH--HHHc-------------------------------CCcHHHhcCCCcEEecCCCCHHHHHHHHHc
Confidence                00     00  0000                               011345678889999999999999999999


Q ss_pred             cCCcEE---EEEeCCCcEEEEEehHHHHH
Q 015178          363 RRVSYV---WVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       363 ~~ihrl---~VVD~~~~lvGIVT~~DIL~  388 (412)
                      ++.+++   +||+++|+++|+||..|+++
T Consensus        90 ~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          90 RDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            987544   68988899999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.18  E-value=6.1e-11  Score=87.32  Aligned_cols=55  Identities=25%  Similarity=0.304  Sum_probs=52.4

Q ss_pred             cccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          337 RVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       337 ~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      +++|+++++++++++++.++++.|.+++++++||+|++|+++|+||++||++++.
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            4678899999999999999999999999999999999999999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.18  E-value=3.8e-10  Score=93.32  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=90.7

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +.++++. +.++.+|++.|.+++...+||.|.                       ++++|+++..|++..+.+...    
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~~~~~----   53 (111)
T cd04589           2 PPLIVDA-STSIRDAARLMREHGADALLVRDG-----------------------DPRLGIVTRTDLLDAVLLDGL----   53 (111)
T ss_pred             CCEEECC-CCcHHHHHHHHHHcCCCEEEEecC-----------------------CeEEEEEEHHHHHHHHHcCCC----
Confidence            4678888 999999999999999999999994                       479999999999987653211    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                        ....+++++|...   +.++.+++++.++++.|. ++.+++||+++                 ++++|+||+.|+++|
T Consensus        54 --~~~~~i~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~G~it~~dl~~~  111 (111)
T cd04589          54 --PSSTPVGEIATFP---LITVDPDDFLFNALLLMTRHRIHRVVVREG-----------------GEVVGVLEQTDLLSF  111 (111)
T ss_pred             --CCCCCHHHHhCCC---cEEECCCCcHHHHHHHHHHhCccEEEEeeC-----------------CEEEEEEEhHHhhcC
Confidence              1246788998754   889999999999999999 88999999742                 467899999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.17  E-value=1.3e-10  Score=113.79  Aligned_cols=111  Identities=17%  Similarity=0.237  Sum_probs=93.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      ...+.+++++.+-.++-.+.+.  +..||||+..+++|+                   +|.+|+..--    +.      
T Consensus       200 ~~yL~~~d~v~d~~~l~~kt~~--sRfPVvn~~~kvvGv-------------------Vt~rDv~~~~----~~------  248 (432)
T COG4109         200 TSYLRETDTVEDWLDLVEKTGH--SRFPVVNRSMKVVGV-------------------VTMRDVLDKK----PS------  248 (432)
T ss_pred             ceeccccccHHHHHHHHHHcCC--CccceecccceEEEE-------------------EEehhhhcCC----CC------
Confidence            6668888999999999899998  999999999999999                   6677765410    00      


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                                        .+...+|++.++|+.+.+|++.++.+|+-.
T Consensus       249 --------------------------------------------------t~ieKVMtknp~tv~~~tsVAsvaq~MiwE  278 (432)
T COG4109         249 --------------------------------------------------TTIEKVMTKNPITVRAKTSVASVAQMMIWE  278 (432)
T ss_pred             --------------------------------------------------ccHHHHhccCCeeecccchHHHHHHHHHhc
Confidence                                                              011236899999999999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      ++.-+||||++.+|+||||++|+|+++...+.
T Consensus       279 ~iem~PVv~~n~~llGiitR~dvlk~lq~~q~  310 (432)
T COG4109         279 GIEMLPVVDSNNTLLGIITRQDVLKSLQMIQR  310 (432)
T ss_pred             cceeeeEEcCCceEEEEEEHHHHHHHHHHhcc
Confidence            99999999999999999999999999876544

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.17  E-value=1.2e-10  Score=112.52  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=87.2

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|.++++.++.+++++.+|++.|.+.++  +.+||+|++|+++|+                   ++..|+++....    
T Consensus       160 im~~~~~~~v~~~~~v~~a~~~~~~~~~--~~~~Vvd~~g~~~Gi-------------------vt~~dl~~~~~~----  214 (268)
T TIGR00393       160 LMQTTDLPLIAPTTSFKDALLEMSEKRL--GSAIVCDENNQLVGV-------------------FTDGDLRRALLG----  214 (268)
T ss_pred             HhCCCCCCcCCCCCcHHHHHHHHhhcCC--cEEEEEeCCCCEEEE-------------------EEcHHHHHHHhc----
Confidence            4554337789999999999999999988  999999999999999                   566666542100    


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                               +       .                   ....++.++|.++++++.+++++.+++
T Consensus       215 -------------------------~-------~-------------------~~~~~v~~im~~~~~~v~~~~~l~~a~  243 (268)
T TIGR00393       215 -------------------------G-------G-------------------SLKSEVRDFMTLGPKTFKLDALLLEAL  243 (268)
T ss_pred             -------------------------C-------C-------------------cccCcHHHhCCCCCeEECCCCcHHHHH
Confidence                                     0       0                   000124567888899999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEe
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVT  382 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT  382 (412)
                      ++|.+++++++||+|++|+++|+|+
T Consensus       244 ~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       244 EFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             HHHHHcCCcEEEEECCCCeEEEEEC
Confidence            9999999999999999899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.17  E-value=4.4e-10  Score=93.36  Aligned_cols=108  Identities=23%  Similarity=0.195  Sum_probs=90.0

Q ss_pred             eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCcc
Q 015178           20 LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPE   99 (412)
Q Consensus        20 lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~   99 (412)
                      .++++. ++++.+|++.|.++++..+||.+.                      +++++|+++..|++..+.+..      
T Consensus         4 ~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~dl~~~~~~~~------   54 (113)
T cd04607           4 QLLVSP-DASILDALRKIDKNALRIVLVVDE----------------------NGRLLGTVTDGDIRRALLKGL------   54 (113)
T ss_pred             ceEECC-CCCHHHHHHHHHhcCcCEEEEECC----------------------CCCEEEEEEcHHHHHHHhcCC------
Confidence            467888 999999999999999999999985                      368999999999987665321      


Q ss_pred             cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178          100 SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus       100 ~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                       ....++.++|...   +.++.+++++.++++.|. ++.+++||+++                +++++|+||++||+.
T Consensus        55 -~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvit~~di~~  112 (113)
T cd04607          55 -SLDDPVSEVMNRN---PITAKVGSSREEILALMRERSIRHLPILDE----------------EGRVVGLATLDDLLS  112 (113)
T ss_pred             -CcCCCHHHhhcCC---CEEEcCCCCHHHHHHHHHHCCCCEEEEECC----------------CCCEEEEEEhHHhcc
Confidence             1245688998644   789999999999999999 88999999863                256899999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=2.4e-10  Score=97.95  Aligned_cols=116  Identities=16%  Similarity=0.211  Sum_probs=92.2

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++++.+|++.|.+++..++||+|.                      +++++|+++..||++++.........
T Consensus         2 ~~~~v~~-~~~l~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~i~~~~l~~~~~~~~~~~~~   58 (132)
T cd04636           2 DVITVKK-DDTLRDVVEILLTGKISGVPVVDN----------------------EGRVVGIVSEGDLIRKIYKGKGLFYV   58 (132)
T ss_pred             CCeEeCC-CCcHHHHHHHHHHhCCCccceECC----------------------CCCEEEEEeHHHHHHHHhccCCcccc
Confidence            4678899 999999999999999999999995                      35899999999999887542111100


Q ss_pred             --------------ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178           99 --------------ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND  163 (412)
Q Consensus        99 --------------~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~  163 (412)
                                    ......+++++|...   +..+.+++++.++++.|. ++.+++||.++                 +
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----------------~  118 (132)
T cd04636          59 TLLYSVIFLDESKIKKLLGKKVEEIMTKK---VITVDEDTTIEDVARIMSKKNIKRLPVVDD-----------------G  118 (132)
T ss_pred             cccccccccchHHHHHHcCCCHHHhccCC---ceEECCCCcHHHHHHHHHHCCCCeeEEEEC-----------------C
Confidence                          001113788888754   789999999999999998 88999999742                 4


Q ss_pred             CeeeeecHHHHHHH
Q 015178          164 SEYCWLTQEDLIRY  177 (412)
Q Consensus       164 ~~v~iITq~DIv~~  177 (412)
                      +.+|++|+.|+++|
T Consensus       119 ~~iGvit~~dl~~~  132 (132)
T cd04636         119 KLVGIISRGDIIRS  132 (132)
T ss_pred             EEEEEEEHHHhhcC
Confidence            68899999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=3.6e-10  Score=95.31  Aligned_cols=118  Identities=18%  Similarity=0.296  Sum_probs=93.8

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC-
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN-   97 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~-   97 (412)
                      +++++++ ++++.+|++.|.++++..+||+|.+                     .++++|+++..|+..++.+...... 
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~i~V~d~~---------------------~~~~~G~v~~~dl~~~~~~~~~~~~~   59 (125)
T cd04631           2 DVVTVPP-TTPIMEAAKIMVRNGFRRLPVVDEG---------------------TGKLVGIITATDILKYLGGGEKFNKI   59 (125)
T ss_pred             CceEeCC-CCcHHHHHHHHHHcCcccceeEeCC---------------------CCEEEEEEEHHHHHHHhhccchhccc
Confidence            5788899 9999999999999999999999952                     1689999999999988764211100 


Q ss_pred             ----cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHH
Q 015178           98 ----PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQE  172 (412)
Q Consensus        98 ----~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~  172 (412)
                          .......++.++|...   +.++++++++.++++.|. ++.+.++|.++                ++..+|+||..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----------------~~~~~Gvit~~  120 (125)
T cd04631          60 KTGNGLEAINEPVRSIMTRN---VITITPDDSIKDAAELMLEKRVGGLPVVDD----------------DGKLVGIVTER  120 (125)
T ss_pred             cccccchhhhcCHHHHhcCC---ceEeCCCCcHHHHHHHHHHcCCceEEEEcC----------------CCcEEEEEEHH
Confidence                0012345788888755   899999999999999999 88889998753                25688999999


Q ss_pred             HHHHH
Q 015178          173 DLIRY  177 (412)
Q Consensus       173 DIv~~  177 (412)
                      ||+++
T Consensus       121 di~~~  125 (125)
T cd04631         121 DLLKA  125 (125)
T ss_pred             HhhcC
Confidence            99864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.16  E-value=6.6e-11  Score=123.19  Aligned_cols=177  Identities=20%  Similarity=0.241  Sum_probs=135.6

Q ss_pred             CCchhhhccCCCCceEecCCCCcHHHHHHHHhc------CCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178          103 QDPVSVLLPEASGVIRHLEPSASLLEAVDLLLG------GVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus       103 ~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~------gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                      ..+++++|+.+   +.+++++.++.++++.|.+      ++..++|+++                +++.+|+|+..|++.
T Consensus       130 e~tvg~iMt~~---~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~----------------~~~l~GvV~l~dLl~  190 (449)
T TIGR00400       130 DDSAGRIMTIE---YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE----------------SKHLKGVLSIRDLIL  190 (449)
T ss_pred             cchHHHhCcCc---eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC----------------CCeEEEEEEHHHHhc
Confidence            36799999866   8999999999999999962      3445565542                356889999999864


Q ss_pred             HHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHH
Q 015178          177 YFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVA  256 (412)
Q Consensus       177 ~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~  256 (412)
                      .          ....++++  +|.++ ++++.+++++.+|++.|.++++  .++||||++|+++|+              
T Consensus       191 a----------~~~~~v~~--im~~~-~~~v~~~~~~~eal~~m~~~~~--~~lpVVD~~g~lvGi--------------  241 (449)
T TIGR00400       191 A----------KPEEILSS--IMRSS-VFSIVGVNDQEEVARLIQKYDF--LAVPVVDNEGRLVGI--------------  241 (449)
T ss_pred             C----------CCCCcHHH--HhCCC-CeeECCCCCHHHHHHHHHHcCC--CEEeEEcCCCeEEEE--------------
Confidence            1          01335655  68888 9999999999999999999999  999999999999999              


Q ss_pred             HhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccc
Q 015178          257 AAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSA  336 (412)
Q Consensus       257 ~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a  336 (412)
                           +|..|++..+...                 .-                                           
T Consensus       242 -----It~~Dil~~l~~~-----------------~~-------------------------------------------  256 (449)
T TIGR00400       242 -----VTVDDIIDVIQSE-----------------AT-------------------------------------------  256 (449)
T ss_pred             -----EEHHHHHHHHHhh-----------------hH-------------------------------------------
Confidence                 6677877643100                 00                                           


Q ss_pred             cccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178          337 RVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM  397 (412)
Q Consensus       337 ~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~  397 (412)
                      .++|+...+++.+++.+..++.+|.++|+..++|.    .+.|++| ..++..+.+.+.+.
T Consensus       257 ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~l~~~  312 (449)
T TIGR00400       257 EDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDLLLSL  312 (449)
T ss_pred             HHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHHHHHH
Confidence            12333445556677889999999999999999884    7899999 88988877665543

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=3e-10  Score=92.62  Aligned_cols=93  Identities=14%  Similarity=0.144  Sum_probs=80.9

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++++.+|++.|.+++++.+||+|+                      +++++|+++..|+.....        
T Consensus         2 ~~~~v~~-~~~i~~a~~~~~~~~~~~~~V~d~----------------------~~~~~Giv~~~dl~~~~~--------   50 (96)
T cd04614           2 NVPTVWE-ETPLPVAVRIMELANVKALPVLDD----------------------DGKLSGIITERDLIAKSE--------   50 (96)
T ss_pred             CccEeCC-CCcHHHHHHHHHHcCCCeEEEECC----------------------CCCEEEEEEHHHHhcCCC--------
Confidence            5678899 999999999999999999999995                      368999999999987310        


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                                        ++++++++++.+|++.|. ++.+++||.++                +++++|+||++|+++
T Consensus        51 ------------------~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~----------------~~~~~Giit~~di~~   95 (96)
T cd04614          51 ------------------VVTATKRTTVSECAQKMKRNRIEQIPIING----------------NDKLIGLLRDHDLLK   95 (96)
T ss_pred             ------------------cEEecCCCCHHHHHHHHHHhCCCeeeEECC----------------CCcEEEEEEHHHhhc
Confidence                              478999999999999998 99999999863                256889999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=5e-10  Score=91.92  Aligned_cols=103  Identities=19%  Similarity=0.326  Sum_probs=84.4

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.++.++.++++.|.+.+.  +.+||+|++|+++|+                   ++..|++....     +.    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~-------------------v~~~~l~~~~~-----~~----   52 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKV--SGVPVVKKSGELVGI-------------------ITRKDLLRNPE-----EE----   52 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCC--CeEEEEcCCCcEEEE-------------------EEHHHHHhccc-----cc----
Confidence            7889999999999999999988  999999988999999                   55666543100     00    


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                                         ...++|..++.++.+++++.+++.+|.++
T Consensus        53 ---------------------------------------------------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~   81 (106)
T cd04638          53 ---------------------------------------------------QLALLMTRDPPTVSPDDDVKEAAKLMVEN   81 (106)
T ss_pred             ---------------------------------------------------hHHHHhcCCCceECCCCCHHHHHHHHHHc
Confidence                                                               00123456788899999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.+++||+|+ |+++|+||..|+++
T Consensus        82 ~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          82 NIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            9999999996 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.15  E-value=4.7e-10  Score=93.32  Aligned_cols=108  Identities=15%  Similarity=0.210  Sum_probs=84.6

Q ss_pred             eEecCCCCcHHHHHHHHh-cC-CceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcc
Q 015178          117 IRHLEPSASLLEAVDLLL-GG-VQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPIN  194 (412)
Q Consensus       117 ~~tV~~~~sL~~ai~lm~-~g-v~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~  194 (412)
                      +.++++++++.+|++.|. ++ .++++|+++                +++.+|+||..|+++......      ...++.
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~----------------~~~~~G~v~~~dl~~~~~~~~------~~~~v~   60 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDN----------------EGRYVGIISLADLRAIPTSQW------AQTTVI   60 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEEcC----------------CCcEEEEEEHHHHHHHHHhhc------cccchh
Confidence            678999999999999987 54 788888753                357889999999998764311      123444


Q ss_pred             cccCCCC-CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178          195 SLNIVDD-AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS  250 (412)
Q Consensus       195 ~L~i~~~-~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~  250 (412)
                      +  +|.. ..+.++.+++++.+|++.|.+++.  +.+||+|++|+++|+||..||.+
T Consensus        61 ~--~~~~~~~~~~v~~~~~l~~a~~~~~~~~~--~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          61 Q--VMTPAAKLVTVLSEESLAEVLKLLEEQGL--DELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             h--hhcccccceEECCCCcHHHHHHHHHHCCC--CeeEEEcCCCcEEEEEeccceec
Confidence            4  3542 126789999999999999999999  99999998899999977666643

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=4.3e-10  Score=92.83  Aligned_cols=109  Identities=21%  Similarity=0.237  Sum_probs=91.1

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +.+++.+ ++|+.+|++.|.+++...+||++.                      .++++|+++..|+.+++.+..     
T Consensus         2 ~~~~v~~-~~~i~e~~~~~~~~~~~~~~V~~~----------------------~~~~~G~v~~~~l~~~~~~~~-----   53 (111)
T cd04639           2 HFETLSP-ADTLDDAADALLATTQHEFPVVDG----------------------DGHLVGLLTRDDLIRALAEGG-----   53 (111)
T ss_pred             CceEcCC-CCcHHHHHHHHHHcCCCcceEECC----------------------CCcEEEEeeHHHHHHHHHhcC-----
Confidence            4567888 999999999999999999999995                      368999999999998776421     


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                         ...++.++|...   +.++.+++++.++++.|. ++.+++||+++                +++.+|+||..|+.++
T Consensus        54 ---~~~~v~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----------------~~~~~G~it~~dl~~~  111 (111)
T cd04639          54 ---PDAPVRGVMRRD---FPTVSPSATLDAVLRLMQQGGAPAVPVVDG----------------SGRLVGLVTLENVGEL  111 (111)
T ss_pred             ---CCCcHHHHhcCC---CcEECCCCcHHHHHHHHHhcCCceeeEEcC----------------CCCEEEEEEHHHhhcC
Confidence               135799999754   889999999999999999 78999999853                2568899999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.14  E-value=4.2e-10  Score=93.46  Aligned_cols=105  Identities=22%  Similarity=0.377  Sum_probs=86.2

Q ss_pred             eEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCccc
Q 015178          117 IRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINS  195 (412)
Q Consensus       117 ~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~  195 (412)
                      +.++.++.++.+|.++|. +++++++|...                 .+++|++|..|+++.+........     ++.+
T Consensus         9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-----------------~~l~Giit~~di~~~~~~~~~~~~-----~v~~   66 (117)
T COG0517           9 VITVKPDTSVRDALLLMSENGVSAVPVVDD-----------------GKLVGIITERDILRALAAGGKRLL-----PVKE   66 (117)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----------------CEEEEEEEHHHHHHHHhccCCccc-----cHHH
Confidence            789999999999999999 89999988742                 258899999999999875321110     3433


Q ss_pred             ccCCCCCcEEEEeCCCcHHHHHHHHHh-cCCCCceeEEEcCCC-cEeeeecCCcc
Q 015178          196 LNIVDDAGIFAIQYDEPAAFAIPLIAQ-SHINQTSVALVDEEG-RLVGDISPFSF  248 (412)
Q Consensus       196 L~i~~~~~v~tv~~~~~~~~a~~~m~~-~~i~~s~vpVVd~~g-~lvG~IS~~dl  248 (412)
                        +|+.+ ++++++++++.+|++.|.+ +++  +++||+|+++ +++|++|..|+
T Consensus        67 --v~~~~-~~~~~~~~~~~~~~~~m~~~~~~--~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          67 --VMTKP-VVTVDPDTPLEEALELMVERHKI--RRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             --hccCC-cEEECCCCCHHHHHHHHHHHcCc--CeEEEEECCCCeEEEEEEHHHc
Confidence              57677 9999999999999999999 799  9999999986 99999664443

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=5.8e-10  Score=96.79  Aligned_cols=115  Identities=12%  Similarity=0.175  Sum_probs=91.7

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCC--
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLL--   96 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~--   96 (412)
                      ++++++. ++++.+|++.|.++++..+||+|.                      .++++|+++..|+++++.......  
T Consensus         2 ~~~~v~~-~~~~~~a~~~~~~~~~~~l~V~d~----------------------~~~~~Giv~~~dl~~~~~~~~~~~~~   58 (135)
T cd04621           2 DIATVHP-EHSLLHVVDEMEKNGVGRVIVVDD----------------------NGKPVGVITYRDLAFAEFEDNERGLP   58 (135)
T ss_pred             CceEeCC-CCcHHHHHHHHHHcCCCcceEECC----------------------CCCEEEEEeHHHHHHHhhcccccccc
Confidence            3577888 999999999999999999999995                      368999999999998775311000  


Q ss_pred             -----------C----cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178           97 -----------N----PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF  160 (412)
Q Consensus        97 -----------~----~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~  160 (412)
                                 .    .......+++++|...   +.++.+++++.++++.|. ++.+++||+++               
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---------------  120 (135)
T cd04621          59 KKSIKMKRKAGQKRYRYVKEVPLVAEDIMTEE---IITVSPNDDVVDAAKLMLEANISGLPVVDN---------------  120 (135)
T ss_pred             hhhhhhhhhcccccccccccccccHHHhcCCC---CeEECCCCCHHHHHHHHHHcCCCEEEEEeC---------------
Confidence                       0    0011245799999754   789999999999999998 88899999742               


Q ss_pred             CCCCeeeeecHHHHHH
Q 015178          161 HNDSEYCWLTQEDLIR  176 (412)
Q Consensus       161 ~~~~~v~iITq~DIv~  176 (412)
                        ++++|+||+.|+++
T Consensus       121 --~~~~Gvit~~di~~  134 (135)
T cd04621         121 --DNIVGVITKTDICR  134 (135)
T ss_pred             --CEEEEEEEHHHHhh
Confidence              46889999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.13  E-value=4.4e-10  Score=92.76  Aligned_cols=112  Identities=16%  Similarity=0.148  Sum_probs=91.8

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++++++++ ++++.+|++.|.++++..+||+|.                      +++++|+++..|+.+++.+....  
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~~G~v~~~~l~~~~~~~~~~--   55 (114)
T cd04613           1 RDVVTIPE-DTPLNELLDVIAHSPENNFPVVDD----------------------DGRLVGIVSLDDIREILFDPSLY--   55 (114)
T ss_pred             CCceeeCC-CCcHHHHHHHHHhCCCcceeEECC----------------------CCCEEEEEEHHHHHHHHhccccc--
Confidence            35778999 999999999999999999999995                      36899999999999876532110  


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                          -..++.++|...   +.++.+++++.++++.|. .+.+++||++.+               .++.+|++|+.|+++
T Consensus        56 ----~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------~~~~~Gvvt~~di~~  113 (114)
T cd04613          56 ----DLVVASDIMTKP---PVVVYPEDSLEDALKKFEDSDYEQLPVVDDD---------------PGKLLGILSRSDLLS  113 (114)
T ss_pred             ----ccEEHHHhccCC---CcEEcCCCCHHHHHHHHhhCCccEeeEEeCC---------------CCEEEEEEEhHHhhc
Confidence                125788999755   789999999999999999 888899987531               256889999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.13  E-value=1.1e-09  Score=90.21  Aligned_cols=108  Identities=17%  Similarity=0.239  Sum_probs=90.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      +++++++. ++++.+|++.|.++++.++||.+.                       ++++|+++..|+++...+...   
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~~l~~~~~~~~~---   53 (110)
T cd04588           1 KPLITLNP-NATLREAARLFNTHHIHGAPVVDD-----------------------GKLVGIVTLSDIAHAIARGLE---   53 (110)
T ss_pred             CCcEEECC-CCCHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEHHHHHHHHhcccc---
Confidence            35788999 999999999999999999999994                       479999999999987553211   


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                           ..++.++|...   +.++.+++++.++++.|. .+.+.+||+++                +++.+|+||..|+++
T Consensus        54 -----~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~i~~~dl~~  109 (110)
T cd04588          54 -----LAKVKDVMTKD---VITIDEDEQLYDAIRLMNKHNVGRLIVTDD----------------EGRPVGIITRTDILR  109 (110)
T ss_pred             -----ccCHHHHhcCC---ceEECCCCCHHHHHHHHHhcCCCEEEEECC----------------CCCEEEEEEhHHhhc
Confidence                 15688888644   889999999999999999 88899999753                256889999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.13  E-value=1.1e-09  Score=114.30  Aligned_cols=121  Identities=17%  Similarity=0.132  Sum_probs=102.0

Q ss_pred             ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178            3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM   82 (412)
Q Consensus         3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~   82 (412)
                      ..++..+++++|.  ++.+++++ ++|+.+|++.|.+++++++||+|.                       ++++||||.
T Consensus        83 e~v~~VKv~eim~--~~pvtv~p-~~tI~eA~~lm~~~~~~~~vVvD~-----------------------gklvGIVT~  136 (475)
T TIGR01303        83 QTVAFVKSRDLVL--DTPITLAP-HDTVSDAMALIHKRAHGAAVVILE-----------------------DRPVGLVTD  136 (475)
T ss_pred             HHHhhcchhhccc--cCCeEECC-CCCHHHHHHHHHhcCCeEEEEEEC-----------------------CEEEEEEEH
Confidence            4566778889985  56799999 999999999999999999999983                       579999999


Q ss_pred             HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccC
Q 015178           83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFH  161 (412)
Q Consensus        83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~  161 (412)
                      .|+...        +    ...+++++|+..   ++++.+++++.+|+++|. ++++++||+++                
T Consensus       137 rDL~~~--------~----~~~~V~dIMt~~---litv~~~~sL~eAl~lM~~~~i~~LPVVD~----------------  185 (475)
T TIGR01303       137 SDLLGV--------D----RFTQVRDIMSTD---LVTAPADTEPRKAFDLLEHAPRDVAPLVDA----------------  185 (475)
T ss_pred             HHhhcC--------C----CCCCHHHHccCC---ceEeCCCCcHHHHHHHHHHcCCCEEEEEcC----------------
Confidence            997321        0    135799999855   899999999999999999 89999999863                


Q ss_pred             CCCeeeeecHHHHHHHHHH
Q 015178          162 NDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       162 ~~~~v~iITq~DIv~~l~~  180 (412)
                      +++++|+||+.||++....
T Consensus       186 ~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       186 DGTLAGILTRTGALRATIY  204 (475)
T ss_pred             CCeEEEEEEHHHHHHHHhC
Confidence            2568899999999997754

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.13  E-value=3.9e-10  Score=117.37  Aligned_cols=114  Identities=16%  Similarity=0.189  Sum_probs=90.2

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|.++ +.++.+++++.+|++.|.++++  +.+||+|++|+++|+                   ++..|++..+..    
T Consensus       340 im~~~-~~~v~~~~tl~ea~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~~~~~----  393 (454)
T TIGR01137       340 LHLPA-PVTVHPTETVGDAIEILREYGF--DQLPVVTEAGKVLGS-------------------VTLRELLSALFA----  393 (454)
T ss_pred             hCcCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCeEEEE-------------------EEHHHHHHHHhc----
Confidence            57788 9999999999999999999988  999999998999999                   667777653210    


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                              ..       .     .              .+.++.++|..++.++++++++.+++
T Consensus       394 ------------------------~~-------~-----~--------------~~~~v~~im~~~~~~v~~~~~l~~a~  423 (454)
T TIGR01137       394 ------------------------GK-------A-----N--------------PDDAVSKVMSKKFIQIGEGEKLSDLS  423 (454)
T ss_pred             ------------------------cC-------C-----C--------------cCCCHHHhcCCCCeEECCcCcHHHHH
Confidence                                    00       0     0              00123457888889999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      .+|.+++   .+||+++|+++||||++||++++
T Consensus       424 ~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       424 KFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             HHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence            9998754   45666678999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=9.7e-10  Score=90.84  Aligned_cols=110  Identities=10%  Similarity=0.178  Sum_probs=89.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      .+.++++ ++++.+|++.|.+++...+||.+                       +++++|+++..|+..++.+...    
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~~-----------------------~~~~~G~v~~~dl~~~~~~~~~----   53 (112)
T cd04625           2 TIYTVAP-ETLLSEAVATMAEQDLGSLVVME-----------------------RGELVGLLTFREVLQAMAQHGA----   53 (112)
T ss_pred             CcEEECC-CCcHHHHHHHHHHcCCCeEEEee-----------------------CCEEEEEEEHHHHHHHHHhcCC----
Confidence            4678899 99999999999999988888776                       3689999999999987764210    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                       .....++.++|...   +.++.+++++.++++.|. ++.+++||+++                 ++.+|+||..|++++
T Consensus        54 -~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-----------------~~~~Gvvt~~dl~~~  112 (112)
T cd04625          54 -GVLDTTVRAIMNPE---PIVASPDDSIDEVRRLMVERHLRYLPVLDG-----------------GTLLGVISFHDVAKA  112 (112)
T ss_pred             -chhcCCHHHHhCCC---CeEECCCCCHHHHHHHHHHcCCCeeeEEEC-----------------CEEEEEEEHHHhhcC
Confidence             01135799999644   788999999999999999 88999999742                 468899999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=4.5e-10  Score=93.01  Aligned_cols=112  Identities=13%  Similarity=0.129  Sum_probs=91.6

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++++.+|++.|.++++.++||++.                      +++++|+++..|+++.+.+....   
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~~G~v~~~~l~~~~~~~~~~---   55 (114)
T cd04629           2 NPVTFTP-DMSVTEAVEKLLKSKISGGPVVDD----------------------NGNLVGFLSEQDCLKQLLESSYH---   55 (114)
T ss_pred             CCeEeCC-CCCHHHHHHHHHhcCCCCccEECC----------------------CCeEEEEeehHHHHHHhhhhhhc---
Confidence            5678899 999999999999999999999985                      36899999999999877542110   


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                       .....++.++|...   +..+.+++++.++++.|. ++.+++||+++                 +..+|+||+.||+++
T Consensus        56 -~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~Gvit~~di~~~  114 (114)
T cd04629          56 -CDGVATVRDIMTTE---VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-----------------GKLVGQISRRDVLRA  114 (114)
T ss_pred             -cCCCccHHHHhccC---ceEECCCCcHHHHHHHHHHhCCCccCEEEC-----------------CEEEEEEEHHHHhcC
Confidence             11245788998644   788999999999999999 88888988742                 467899999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=7.3e-10  Score=93.01  Aligned_cols=111  Identities=23%  Similarity=0.346  Sum_probs=86.7

Q ss_pred             ceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCC-----CCC
Q 015178          116 VIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLS-----PTP  189 (412)
Q Consensus       116 ~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~-----~l~  189 (412)
                      ++.++.+++++.++++.|. .+++++||.++                +++.+|++|..|+.+++..+.....     ...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~   65 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE----------------DGKLVGLLTQRDLLRAALSSLSDNGEESLTKER   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC----------------CCCEEEEEEHHHHHHHhcccccccccccccccc
Confidence            3678999999999999999 88899998753                2578899999999998754221100     112


Q ss_pred             CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCc
Q 015178          190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFS  247 (412)
Q Consensus       190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~d  247 (412)
                      ..++.+  ++..+ +.++.+++++.++++.|.+++.  ..+||+|++|+++|+||..|
T Consensus        66 ~~~v~~--~~~~~-~~~v~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~Gvit~~d  118 (122)
T cd04803          66 DVPVAE--VMKTD-VLTVTPDTPLREAAEIMVENKI--GCLPVVDDKGTLVGIITRSD  118 (122)
T ss_pred             CcCHHH--hhCCC-CeEeCCCCcHHHHHHHHHHcCC--CeEEEEcCCCCEEEEEEHHH
Confidence            334443  56677 8999999999999999999998  99999998899999955333

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.11  E-value=1.3e-09  Score=114.52  Aligned_cols=167  Identities=17%  Similarity=0.155  Sum_probs=122.7

Q ss_pred             hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178           10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL   89 (412)
Q Consensus        10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l   89 (412)
                      +.++|.  ++++++++ ++|+.+|++.|.++++..+||+|.                      +++++|+|+..|+....
T Consensus        89 ~~dim~--~~~v~i~~-~~tv~ea~~~m~~~~~~~lpVvd~----------------------~g~lvGiVt~~DL~~~~  143 (486)
T PRK05567         89 SESGVV--TDPVTVTP-DTTLAEALALMARYGISGVPVVDE----------------------NGKLVGIITNRDVRFET  143 (486)
T ss_pred             hhhccc--CCCeEeCC-CCCHHHHHHHHHHhCCCEEEEEcc----------------------CCEEEEEEEHHHhhhcc
Confidence            567774  67899999 999999999999999999999995                      36899999999986421


Q ss_pred             hhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178           90 CKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW  168 (412)
Q Consensus        90 ~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i  168 (412)
                                 ....++.++|.  ..+++++.+++++.++++.|. ++++.+||+++                .++.+|+
T Consensus       144 -----------~~~~~V~dim~--~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe----------------~g~lvGi  194 (486)
T PRK05567        144 -----------DLSQPVSEVMT--KERLVTVPEGTTLEEALELLHEHRIEKLPVVDD----------------NGRLKGL  194 (486)
T ss_pred             -----------cCCCcHHHHcC--CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----------------CCcEEEE
Confidence                       12357999997  123889999999999999999 89999999864                3578999


Q ss_pred             ecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeee
Q 015178          169 LTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDI  243 (412)
Q Consensus       169 ITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~I  243 (412)
                      ||..||++.+.. ...    ....-..|  .-.. .+.+.++  -.++++.|.+.++  .. .++|. +|+..|++
T Consensus       195 IT~~DLl~~~~~-p~a----~~d~~g~l--~V~a-ai~~~~~--~~e~a~~L~~agv--dv-ivvD~a~g~~~~vl  257 (486)
T PRK05567        195 ITVKDIEKAEEF-PNA----CKDEQGRL--RVGA-AVGVGAD--NEERAEALVEAGV--DV-LVVDTAHGHSEGVL  257 (486)
T ss_pred             EEhHHhhhhhhC-CCc----ccccCCCE--EEEe-ecccCcc--hHHHHHHHHHhCC--CE-EEEECCCCcchhHH
Confidence            999999998632 000    00000111  1112 3333332  2788999999999  75 46664 57776763

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.11  E-value=1.3e-09  Score=89.89  Aligned_cols=109  Identities=22%  Similarity=0.241  Sum_probs=90.5

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      +++++++. +.++.+|++.|.++++..+||.+.                       ++++|+++..|+..++...+.   
T Consensus         1 ~~~~~v~~-~~~~~~~~~~~~~~~~~~i~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~---   53 (111)
T cd04800           1 RPPVTCSP-DTTIREAARLMTEHRVSSLLVVDD-----------------------GRLVGIVTDRDLRNRVVAEGL---   53 (111)
T ss_pred             CCCEEECC-CCcHHHHHHHHHHcCCCeEEEEEC-----------------------CEEEEEEEhHHHHHHHhccCC---
Confidence            35778899 999999999999999999999994                       479999999999986553211   


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                         ....++.++|...   +..+.++++|.++++.|. ++.+++||++.                 ++.+|++|..|+++
T Consensus        54 ---~~~~~i~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~Giit~~di~~  110 (111)
T cd04800          54 ---DPDTPVSEVMTAP---PITIPPDATVFEALLLMLERGIHHLPVVDD-----------------GRLVGVISATDLLR  110 (111)
T ss_pred             ---CccCCHHHHhCCC---CeEECCCCcHHHHHHHHHHcCCCeeeEeEC-----------------CEEEEEEEHHHhhc
Confidence               1235688888654   889999999999999999 88999998742                 46789999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=8.8e-10  Score=91.09  Aligned_cols=108  Identities=16%  Similarity=0.215  Sum_probs=89.7

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++.++. ++++.+|++.|.++++..+||++.                      .++++|+++..|+..+.....     
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~dl~~~~~~~~-----   53 (111)
T cd04626           2 DFPTIDE-DASIREALHEMLKYNTNEIIVKDN----------------------EEKLKGVVTFTDILDLDLFES-----   53 (111)
T ss_pred             CceEECC-CccHHHHHHHHHHhCCCeEEEEcC----------------------CCCEEEEEehHHhHHHHhhcc-----
Confidence            4678889 999999999999999999999985                      368999999999987654311     


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                        ....++.++|...   +.++.+++++.+|++.|. ++.+++||+++                 +..+|+||..|+++
T Consensus        54 --~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~G~it~~di~~  110 (111)
T cd04626          54 --FLEKKVFNIVSQD---VFYVNEEDTIDEALDIMREKQIGRLPVVDD-----------------NKLIGVVRTKDILD  110 (111)
T ss_pred             --cccCcHHHHhcCC---cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-----------------CEEEEEEEhHHhcc
Confidence              1245788888644   889999999999999999 89999999742                 45789999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.11  E-value=1.3e-09  Score=89.37  Aligned_cols=105  Identities=15%  Similarity=0.224  Sum_probs=88.9

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +..++++ ++++.+|++.|.++++..+||++.                      .++++|+++..|++.....       
T Consensus         3 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~dl~~~~~~-------   52 (109)
T cd04583           3 NPVTITP-DRTLAEAIKLMRDKKVDSLLVVDK----------------------DNKLLGIVSLESLEQAYKE-------   52 (109)
T ss_pred             CCEEECC-CCCHHHHHHHHHHCCCceEEEEcC----------------------CCcEEEEEEHHHHHHHhhc-------
Confidence            4677889 999999999999999999999995                      2589999999999876422       


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                          ..++.++|...   +..+++++++.++++.|. ++.+++||+++                +++.+|++|..|+++
T Consensus        53 ----~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~----------------~g~~~Gvit~~~l~~  108 (109)
T cd04583          53 ----AKSLEDIMLED---VFTVQPDASLRDVLGLVLKRGPKYVPVVDE----------------DGKLVGLITRSSLVD  108 (109)
T ss_pred             ----CCcHhHhhcCC---ceEECCCCcHHHHHHHHHHcCCceeeEECC----------------CCeEEEEEehHHhhc
Confidence                24688888755   789999999999999999 79999999853                256889999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.10  E-value=5.8e-10  Score=95.99  Aligned_cols=116  Identities=16%  Similarity=0.157  Sum_probs=92.0

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccC--
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENL--   95 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l--   95 (412)
                      ++++++++ ++++.+|++.|.++++.++||+|+                      .++++|+++..|+..++......  
T Consensus         2 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~Vvd~----------------------~~~~~Gvi~~~dl~~~~~~~~~~~~   58 (135)
T cd04586           2 TDVVTVSP-ETSVAEAARLMLDNHISGLPVVDD----------------------DGRLVGIVSEGDLLRRAELGTERRR   58 (135)
T ss_pred             CCCEEeCC-CCCHHHHHHHHHHcCCCCceEECC----------------------CCCEEEEeeHHHHHHHhcccCcchh
Confidence            56888999 999999999999999999999995                      36899999999998865432100  


Q ss_pred             -------CCcc-------cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178           96 -------LNPE-------SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF  160 (412)
Q Consensus        96 -------~~~~-------~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~  160 (412)
                             ....       .....++.++|...   +.++.+++++.++++.|. ++.+++||++ .              
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~--------------  120 (135)
T cd04586          59 ARWLDLLAGAEELAAAFVRSHGRKVADVMTRP---VVTVGEDTPLAEVAELMEEHRIKRVPVVR-G--------------  120 (135)
T ss_pred             hhHHHHhcchHHHHHHHHHhcCCCHHHHhCCC---ceEeCCCCcHHHHHHHHHHcCCCccCEec-C--------------
Confidence                   0000       01235688888644   889999999999999999 8999999975 1              


Q ss_pred             CCCCeeeeecHHHHHH
Q 015178          161 HNDSEYCWLTQEDLIR  176 (412)
Q Consensus       161 ~~~~~v~iITq~DIv~  176 (412)
                        ++.+|+||+.|+++
T Consensus       121 --g~~~Gvit~~di~~  134 (135)
T cd04586         121 --GRLVGIVSRADLLR  134 (135)
T ss_pred             --CEEEEEEEhHhhhc
Confidence              46889999999976

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=1.5e-09  Score=89.75  Aligned_cols=109  Identities=18%  Similarity=0.267  Sum_probs=91.1

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++.+++. ++++.+|++.|.++++..+||.|.                      +++++|+++..|+++++....     
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~~l~~~~~~~~-----   53 (112)
T cd04624           2 PVVTVDP-DTSIREAAKLMAEENVGSVVVVDP----------------------DERPIGIVTERDIVRAVAAGI-----   53 (112)
T ss_pred             CCeEECC-CCcHHHHHHHHHHcCCCEEEEECC----------------------CCCEEEEeeHHHHHHHHhccC-----
Confidence            4678899 999999999999999999999985                      368999999999998776422     


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                        ..+.++.++|...   +.++.+++++.++++.|. ++.+.+||+++                .++..|++|..|+++
T Consensus        54 --~~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~----------------~g~~~Gilt~~dl~~  111 (112)
T cd04624          54 --DLDTPVSEIMTRD---LVTVDPDEPVAEAAKLMRKNNIRHHLVVDK----------------GGELVGVISIRDLVR  111 (112)
T ss_pred             --CCccCHHHhccCC---CEEECCCCcHHHHHHHHHHcCccEEEEEcC----------------CCcEEEEEEHHHhcc
Confidence              1245688888644   889999999999999999 78899998753                256789999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.10  E-value=1.7e-09  Score=89.03  Aligned_cols=107  Identities=15%  Similarity=0.192  Sum_probs=89.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++++++++ +.|+.+|++.|.+++...+||.|.                      .++++|+++..|++..+...     
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~~~~-----   53 (110)
T cd04605           2 RPVVTISE-DASIKEAAKLMIEENINHLPVVDE----------------------DGRLVGIVTSWDISKAVARD-----   53 (110)
T ss_pred             CCCEEECC-CCCHHHHHHHHHhCCCceEEEECC----------------------CCcEEEEEeHHHHHHHHhhC-----
Confidence            46788999 999999999999999999999985                      36899999999998765431     


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                           ..++.++|...   +.++.+++++.++++.|. ++.+++||++.                +++.+|+||+.|+++
T Consensus        54 -----~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~G~v~~~di~~  109 (110)
T cd04605          54 -----KKSVEDIMTRN---VITATPDEPIDVAARKMERHNISALPVVDA----------------ENRVIGIITSEDISK  109 (110)
T ss_pred             -----ccCHHHhcCCC---CeEECCCCcHHHHHHHHHHhCCCEEeEECC----------------CCcEEEEEEHHHhhh
Confidence                 13488888644   789999999999999999 88899999753                357889999999965

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=1.3e-09  Score=90.63  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=87.1

Q ss_pred             CeEEEecCCchHHHHHHHHHhcC-CceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           19 ALRSLSVSSSTVADALSALKRLN-ESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~-I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      +.++++. +.|+.+|++.|.+++ ...+||.+.                       ++++|+++..|++..+.+...   
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~---   54 (115)
T cd04620           2 HPLTVTP-DTPVADAIALMSQQGDSSCVLVVEK-----------------------GRLLGIFTERDIVRLTAIGKD---   54 (115)
T ss_pred             CCeEeCC-CCcHHHHHHHHHhcCCCceEEEcCC-----------------------CcEEEEEeHHHHHHHHhcCCC---
Confidence            4567888 999999999999988 677888872                       579999999999987653211   


Q ss_pred             cccccCCchhhhccCCCCceEecCCC--CcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPS--ASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDL  174 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~--~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DI  174 (412)
                         ....++.++|...   +.++.++  +++.+|++.|. ++.+++||+++                +++++|+||+.|+
T Consensus        55 ---~~~~~i~~~~~~~---~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~----------------~~~~~Gvit~~dl  112 (115)
T cd04620          55 ---LSDLPIGEVMTQP---VVTLQESEIQDIFTALSLFRQHQIRHLPVLDD----------------QGQLIGLVTAESI  112 (115)
T ss_pred             ---ccccCHHHhcCCC---cEEEecccccCHHHHHHHHHHhCCceEEEEcC----------------CCCEEEEEEhHHh
Confidence               1135788888644   7788877  78999999999 88999999863                2578999999999


Q ss_pred             HH
Q 015178          175 IR  176 (412)
Q Consensus       175 v~  176 (412)
                      ++
T Consensus       113 ~~  114 (115)
T cd04620         113 RQ  114 (115)
T ss_pred             hc
Confidence            86

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.09  E-value=1.8e-09  Score=89.13  Aligned_cols=108  Identities=18%  Similarity=0.201  Sum_probs=89.0

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++++++. ++++.+|++.|.++++..+||++.+                     .++++|+++..|+++++.+...    
T Consensus         2 ~~~~i~~-~~~i~~a~~~~~~~~~~~~~v~~~~---------------------~~~~~G~v~~~~l~~~~~~~~~----   55 (111)
T cd04590           2 DIVALDA-DDTLEEILELIAESGHSRFPVYDGD---------------------LDNIIGVVHVKDLLRALAEGEE----   55 (111)
T ss_pred             ceEEEcC-CCCHHHHHHHHhhCCCceEEEECCC---------------------CceEEEEEEHHHHHHHHHcCCC----
Confidence            4788999 9999999999999999999999853                     1689999999999998753210    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                          ..++.++|. .   +.++.+++++.++++.|. ++.+++||+++                .++++|+||++|+++
T Consensus        56 ----~~~~~~~~~-~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvit~~di~~  110 (111)
T cd04590          56 ----DLDLRDLLR-P---PLFVPESTPLDDLLEEMRKERSHMAIVVDE----------------YGGTAGLVTLEDILE  110 (111)
T ss_pred             ----cCCHHHHhc-C---CeecCCCCcHHHHHHHHHhcCCcEEEEEEC----------------CCCEEEEeEHHHhhc
Confidence                145766663 2   688999999999999999 89999999853                256899999999974

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.08  E-value=1.5e-09  Score=88.99  Aligned_cols=109  Identities=22%  Similarity=0.329  Sum_probs=87.9

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++++++. ++++.+|++.|.++++..+||++.                       ++++|+++..|+.+.+.+...    
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~dl~~~~~~~~~----   53 (110)
T cd04609           2 DVVSVAP-DDTVSQAIERMREYGVSQLPVVDD-----------------------GRVVGSIDESDLLDALIEGKA----   53 (110)
T ss_pred             CcEEECC-CCcHHHHHHHHHHcCCceeeEeeC-----------------------CeeEEEEeHHHHHHHHhcccc----
Confidence            4678889 999999999999999999999994                       479999999999998754211    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                        ....++.++|...   +.++.+++++.++.++|.+. +.+||+++                +++++|+||++||++|
T Consensus        54 --~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~-~~~~vv~~----------------~~~~~Gvvt~~di~~~  110 (110)
T cd04609          54 --KFSLPVREVMGEP---LPTVDPDAPIEELSELLDRG-NVAVVVDE----------------GGKFVGIITRADLLKY  110 (110)
T ss_pred             --ccCcCHHHHhcCC---CceeCCCCcHHHHHHHHHhC-CceeEEec----------------CCeEEEEEeHHHhhcC
Confidence              1245688888654   78899999999999999873 44666642                2568899999999876

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.08  E-value=1.7e-09  Score=90.12  Aligned_cols=116  Identities=20%  Similarity=0.151  Sum_probs=91.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhccc-CCC
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEEN-LLN   97 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~-l~~   97 (412)
                      ++.+++. ++++.+|++.|.++++..+||+|.                       ++++|+++..|++.++..... ...
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~i~~~~l~~~~~~~~~~~~~   57 (122)
T cd04585           2 NPITVTP-DTSLMEALKLMKENSIRRLPVVDR-----------------------GKLVGIVTDRDLKLASPSKATTLDI   57 (122)
T ss_pred             CCEEeCC-CCcHHHHHHHHHhCCcceeeEecC-----------------------CeEEEEEeHHHHHHhhhcccccccc
Confidence            4678899 999999999999999999999994                       579999999999987653110 000


Q ss_pred             cc--c-ccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHH
Q 015178           98 PE--S-ALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQED  173 (412)
Q Consensus        98 ~~--~-~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~D  173 (412)
                      ..  . .-..++.++|...   +.++.+++++.+++..|. ++.+++||+++                .+..+|+||..|
T Consensus        58 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvvt~~d  118 (122)
T cd04585          58 WELYYLLSKIKVSDIMTRD---PITVSPDASVEEAAELMLERKISGLPVVDD----------------QGRLVGIITESD  118 (122)
T ss_pred             hhhhhhhcccCHHHhccCC---CeEeCCCCcHHHHHHHHHHcCCCceeEECC----------------CCcEEEEEEHHH
Confidence            00  0 0135688888754   889999999999999999 88999999853                256889999999


Q ss_pred             HHHH
Q 015178          174 LIRY  177 (412)
Q Consensus       174 Iv~~  177 (412)
                      ++++
T Consensus       119 i~~~  122 (122)
T cd04585         119 LFRA  122 (122)
T ss_pred             hhhC
Confidence            9863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=2.2e-09  Score=88.90  Aligned_cols=109  Identities=15%  Similarity=0.219  Sum_probs=89.5

Q ss_pred             eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCcc
Q 015178           20 LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPE   99 (412)
Q Consensus        20 lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~   99 (412)
                      ...+.+ ++++.+|++.|.+++...+||+|.                      .++++|+++..|+.+.+.+.+.     
T Consensus         3 ~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~----------------------~~~~~G~v~~~dl~~~~~~~~~-----   54 (113)
T cd04615           3 PSCVVL-NTDIARAVAEMYTSGSRALPVVDD----------------------KKRLVGIITRYDVLSYALESEE-----   54 (113)
T ss_pred             CEEeeC-CCcHHHHHHHHHHcCCceEeEEcC----------------------CCCEEEEEEHHHHHHhhhhhhh-----
Confidence            467788 999999999999999999999995                      3589999999999875443211     


Q ss_pred             cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178          100 SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus       100 ~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                       ....++.++|...   +.++.+++++.++++.|. ++.+++||+++                +++.+|+||..|+++
T Consensus        55 -~~~~~i~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----------------~g~~~Gvvt~~dl~~  112 (113)
T cd04615          55 -LKDAKVREVMNSP---VITIDANDSIAKARWLMSNNNISRLPVLDD----------------KGKVGGIVTEDDILR  112 (113)
T ss_pred             -hcCCcHHHhccCC---ceEECCCCcHHHHHHHHHHcCCCeeeEECC----------------CCeEEEEEEHHHhhc
Confidence             1235788888644   889999999999999999 88899999853                357899999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.07  E-value=2.3e-09  Score=88.44  Aligned_cols=107  Identities=18%  Similarity=0.265  Sum_probs=90.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      +++++++. +.++.+|.+.|.+++...+||.|.                       ++++|+++..|+...+...     
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~dl~~~~~~~-----   52 (110)
T cd04595           2 SPVKTVRP-EATIEEARELLLRYGHTALPVVEG-----------------------GRVVGIISRRDVEKALRHG-----   52 (110)
T ss_pred             CCceEeCC-CCcHHHHHHHHHHcCCCeeeEeeC-----------------------CEEEEEEEHHHHHHHHhcc-----
Confidence            57889999 999999999999999999999994                       4799999999998765321     


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                         ....++.++|...   +.++.+++++.++++.|. ++.+++||+++                 ++.+|+||+.|+++
T Consensus        53 ---~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----------------~~~~Gvvt~~di~~  109 (110)
T cd04595          53 ---LGHAPVKDYMSTD---VVTVPPDTPLSEVQELMVEHDIGRVPVVED-----------------GRLVGIVTRTDLLR  109 (110)
T ss_pred             ---cccCcHHHHhcCC---CEEECCCCcHHHHHHHHHHcCCCeeEEEeC-----------------CEEEEEEEhHHhhc
Confidence               1246788999754   789999999999999999 88999998741                 46789999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.06  E-value=9.9e-10  Score=95.62  Aligned_cols=117  Identities=15%  Similarity=0.121  Sum_probs=76.9

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      +.++.+++++.+|++.|.++++  +++||+|++|+++|+                   ++..|++.+.........    
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~--~~~~VvD~~g~l~Gi-------------------vt~~Dl~~~~~~~~~~~~----   57 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQ--SCVLVVDSDDFLEGI-------------------LTLGDIQRFLFTNKTTRV----   57 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCC--CEEEEECCCCeEEEE-------------------EEHHHHHHHHhhcccccc----
Confidence            7889999999999999999988  999999999999999                   667776654311000000    


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                              ....  +.+....           ....++     . .   ...+.+.|+.+++++++++++.+|++.|.++
T Consensus        58 --------~~~~--~~~~~~~-----------~~v~~i-----~-~---~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~  107 (133)
T cd04592          58 --------QPED--ETKQTNT-----------CLVSSV-----C-T---KGISYGGQECGLWTCTPDTDLTTAKKLMEAK  107 (133)
T ss_pred             --------ccch--hhccccc-----------ccHHHH-----h-h---hhhhhcccCCCCEEECCCCCHHHHHHHHHHc
Confidence                    0000  0000000           000000     0 0   0001123467899999999999999999999


Q ss_pred             CCcEEEEEeCCC
Q 015178          364 RVSYVWVVEEDC  375 (412)
Q Consensus       364 ~ihrl~VVD~~~  375 (412)
                      +++++||+|+++
T Consensus       108 ~~~~lPVvd~~~  119 (133)
T cd04592         108 GVKQLPVVKRGV  119 (133)
T ss_pred             CCCcCCEecCCc
Confidence            999999999753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=1.7e-09  Score=90.86  Aligned_cols=116  Identities=14%  Similarity=0.177  Sum_probs=92.2

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++++.+|++.|.++++..+||+|.                       ++++|+++..|+.+.+.+.......
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~~~~~~~~~   57 (122)
T cd04637           2 RVVTVEM-DDRLEEVREIFEKHKFHHLLVVED-----------------------NELVGVISDRDYLKAISPFLGTAGE   57 (122)
T ss_pred             CceEeCC-CCCHHHHHHHHHhCCCCEEEEEeC-----------------------CeEEEEEEHHHHHHHHHHHhccccc
Confidence            4678899 999999999999999999999994                       4799999999999876531100000


Q ss_pred             --c--cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHH
Q 015178           99 --E--SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQED  173 (412)
Q Consensus        99 --~--~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~D  173 (412)
                        .  .....++.++|...   ++.+.+++++.++++.|. ++.+++||+++                +++.+|++|..|
T Consensus        58 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~----------------~~~~~Gvit~~d  118 (122)
T cd04637          58 TEKDLATLNRRAHQIMTRD---PITVSPDTPVDEASKLLLENSISCLPVVDE----------------NGQLIGIITWKD  118 (122)
T ss_pred             hHHHHHHHHhHHHHhhcCC---CeeeCCCCcHHHHHHHHHHcCCCeEeEECC----------------CCCEEEEEEHHH
Confidence              0  11235688888755   889999999999999999 88899999753                256889999999


Q ss_pred             HHHH
Q 015178          174 LIRY  177 (412)
Q Consensus       174 Iv~~  177 (412)
                      +++|
T Consensus       119 ll~~  122 (122)
T cd04637         119 LLKY  122 (122)
T ss_pred             hhhC
Confidence            9875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.06  E-value=1.7e-09  Score=89.38  Aligned_cols=111  Identities=24%  Similarity=0.260  Sum_probs=91.6

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++.++++ ++++.+|++.|.+.+...+||.+.                      +++++|+++..|+...+.+....   
T Consensus         3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~~i~~~~~~~~~~---   56 (114)
T cd04604           3 ALPLVSP-DTSLKDALLEMSRKGLGMTAVVDE----------------------DGRLVGIFTDGDLRRALEKGLDI---   56 (114)
T ss_pred             cccccCC-CCcHHHHHHHHHhcCccEEEEEcC----------------------CCCEEEEechHHHHHHHhccCcc---
Confidence            4567888 999999999999999999999995                      36899999999999887642211   


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                         ...++.++|...   +.++.+++++.++++.|. ++.+++||++.                +++.+|+||..||+++
T Consensus        57 ---~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~----------------~~~~iG~it~~di~~~  114 (114)
T cd04604          57 ---LTLPVADVMTRN---PKTIDPDALAAEALELMEENKITALPVVDD----------------NGRPVGVLHIHDLLRA  114 (114)
T ss_pred             ---ccCCHHHhhccC---CeEECCCCcHHHHHHHHHHcCCCEEEEECC----------------CCCEEEEEEHHHhhcC
Confidence               124799999754   678999999999999999 88899999853                2578999999999763

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=1.5e-09  Score=90.93  Aligned_cols=115  Identities=22%  Similarity=0.275  Sum_probs=91.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCC--
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLL--   96 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~--   96 (412)
                      +++++++ ++|+.+|++.|.++++..+||++.                       ++++|+++..|+...+.......  
T Consensus         2 ~~~~i~~-~~~~~~~~~~l~~~~~~~i~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~~~~~   57 (121)
T cd04633           2 PVITVSP-DDRVSHARRLMLDHDISRLPVIEG-----------------------GKLVGIVTEKDIADALRSFRPLVRD   57 (121)
T ss_pred             CCEEECC-CCcHHHHHHHHHHcCCCeeEEEEC-----------------------CEEEEEEchHHHHHhhhhhhhcccc
Confidence            5678899 999999999999999999999993                       58999999999998765321100  


Q ss_pred             -Ccccc-cCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHH
Q 015178           97 -NPESA-LQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQED  173 (412)
Q Consensus        97 -~~~~~-l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~D  173 (412)
                       ..... ...++.++|...   +.++.+++++.++++.|. .+.+++||+++                 ++.+|+||..|
T Consensus        58 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~Gvi~~~d  117 (121)
T cd04633          58 RHQERRIRNLPVSDIMTRP---VITIEPDTSVSDVASLMLENNIGGLPVVDD-----------------GKLVGIVTRTD  117 (121)
T ss_pred             hhhhhhhhccCHHHHccCC---ceEECCCCcHHHHHHHHHHcCCCcccEEEC-----------------CEEEEEEEHHH
Confidence             00011 135688888654   889999999999999998 88999998752                 46889999999


Q ss_pred             HHHH
Q 015178          174 LIRY  177 (412)
Q Consensus       174 Iv~~  177 (412)
                      +++|
T Consensus       118 l~~~  121 (121)
T cd04633         118 ILRY  121 (121)
T ss_pred             hhcC
Confidence            9874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.05  E-value=3.1e-09  Score=87.82  Aligned_cols=110  Identities=16%  Similarity=0.158  Sum_probs=89.5

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++++.+|++.|.+++...+||.+.                       ++++|+++..|++..+...+.    
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~dl~~~~~~~~~----   53 (113)
T cd04587           2 KPATVSP-TTTVQEAAKLMREKRVSCVLVMDG-----------------------NKLVGIFTSKDIALRVVAQGL----   53 (113)
T ss_pred             CCeEeCC-CCCHHHHHHHHHHcCCCeEEEEEC-----------------------CEEEEEEEhHHHHHHHHhcCC----
Confidence            4677888 999999999999999999999983                       479999999999876553211    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                       .....++.++|...   +.++.+++++.++++.|. ++.+++||+++                +++++|+||..|++.
T Consensus        54 -~~~~~~v~~i~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~----------------~~~~~Gvvs~~dl~~  112 (113)
T cd04587          54 -DPESTLVERVMTPN---PVCATSDTPVLEALHLMVQGKFRHLPVVDK----------------SGQVVGLLDVTKLTH  112 (113)
T ss_pred             -CcCcCCHHHhcCCC---CeEEcCCCCHHHHHHHHHHcCCCcccEECC----------------CCCEEEEEEHHHhcc
Confidence             11136799998644   789999999999999999 88899998753                256899999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.05  E-value=3.7e-09  Score=86.88  Aligned_cols=108  Identities=25%  Similarity=0.347  Sum_probs=90.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++.++++ +.++.+|++.|.+++...+||.+.                       ++++|+++..|+.++..+...    
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~----   53 (111)
T cd04611           2 QILTCPP-DTSLAEAASRMRERRISSIVVVDD-----------------------GRPLGIVTERDILRLLASGPD----   53 (111)
T ss_pred             CceEECC-CCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEeHHHHHHHHhcCCC----
Confidence            4677888 999999999999999999999983                       589999999999988754210    


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                         ...+++++|...   +.++.+++++.++++.|. .+.+.++|+++                +++.+|+||+.|+++
T Consensus        54 ---~~~~v~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~----------------~~~~~Gvi~~~di~~  110 (111)
T cd04611          54 ---LQTPVGEVMSSP---LLTVPADTSLYDARQLMREHGIRHLVVVDD----------------DGELLGLLSQTDLLQ  110 (111)
T ss_pred             ---CCcCHHHhcCCC---ceEECCCCCHHHHHHHHHHcCCeEEEEECC----------------CCcEEEEEEhHHhhc
Confidence               246788988654   789999999999999999 88889998753                256789999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.05  E-value=1.4e-09  Score=113.21  Aligned_cols=124  Identities=21%  Similarity=0.280  Sum_probs=100.9

Q ss_pred             ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178            3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM   82 (412)
Q Consensus         3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~   82 (412)
                      ++|+.++++++|.  ++++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+.
T Consensus       330 ~~l~~~~v~~im~--~~~~~v~~-~~tl~ea~~~m~~~~~~~~~Vvd~----------------------~~~~~Givt~  384 (454)
T TIGR01137       330 DVLKNATVKDLHL--PAPVTVHP-TETVGDAIEILREYGFDQLPVVTE----------------------AGKVLGSVTL  384 (454)
T ss_pred             HHhccCCHHHhCc--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCeEEEEEEH
Confidence            5688899999994  67999999 999999999999999999999985                      3689999999


Q ss_pred             HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      .|+++.+.+...      ....++.++|...   +.++++++++.++++.|...  +.+|+.+                +
T Consensus       385 ~dl~~~~~~~~~------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~~~~~--~~~vV~~----------------~  437 (454)
T TIGR01137       385 RELLSALFAGKA------NPDDAVSKVMSKK---FIQIGEGEKLSDLSKFLEKN--SSAIVTE----------------E  437 (454)
T ss_pred             HHHHHHHhccCC------CcCCCHHHhcCCC---CeEECCcCcHHHHHHHHHHC--CeeEEEE----------------C
Confidence            999987754211      1235799999754   78999999999999999842  2344432                2


Q ss_pred             CCeeeeecHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYF  178 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l  178 (412)
                      ++++|+||..||+++|
T Consensus       438 g~liGvvt~~dll~~l  453 (454)
T TIGR01137       438 GKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CEEEEEEEHHHHHHhh
Confidence            5688999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.05  E-value=2.9e-09  Score=87.58  Aligned_cols=110  Identities=17%  Similarity=0.171  Sum_probs=90.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++++.+++ ++++.+|++.|.++++..+||.+.                       ++++|+++..|+........ .  
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~-~--   53 (111)
T cd04612           1 PDVVTVPV-DLTVDEVLALMFGERHRGYPVVDD-----------------------GRLVGIVTLADIRRVPAEGR-E--   53 (111)
T ss_pred             CCCEEeCC-CCcHHHHHHHHHHcCCCcceEeeC-----------------------CeEEEEEEHHHHHHHHhcCc-c--
Confidence            45788999 999999999999999999999994                       47999999999988654311 0  


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                          ...++.++|...   +.++.+++++.++++.|. ++.+.+||.++                +++.+|+||..|+++
T Consensus        54 ----~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~it~~di~~  110 (111)
T cd04612          54 ----ATVLVGDVMTRD---PVTASPDETLRDALKRMAERDIGRLPVVDD----------------SGRLVGIVSRSDLLR  110 (111)
T ss_pred             ----cccCHHHhccCC---CeEECCCCCHHHHHHHHHhCCCCeeeEEcC----------------CCCEEEEEEHHHhhh
Confidence                013577888644   889999999999999999 78999999853                256889999999976


Q ss_pred             H
Q 015178          177 Y  177 (412)
Q Consensus       177 ~  177 (412)
                      +
T Consensus       111 ~  111 (111)
T cd04612         111 A  111 (111)
T ss_pred             C
Confidence            3

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=4e-09  Score=87.14  Aligned_cols=110  Identities=16%  Similarity=0.183  Sum_probs=89.0

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH-HhhhcccCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS-FLCKEENLL   96 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~-~l~~~~~l~   96 (412)
                      ++++++++ ++++.+|++.|.+++...+||.+.                       ++++|+++..|++. .+.....  
T Consensus         1 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~i~~~~l~~~~~~~~~~--   54 (113)
T cd04622           1 RDVVTVSP-DDTIREAARLMREHDVGALPVCEN-----------------------DRLVGIVTDRDIVVRAVAEGRD--   54 (113)
T ss_pred             CCCEEECC-CCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEhHHHHHHHhhccCC--
Confidence            35788999 999999999999999999999994                       58999999999974 3332111  


Q ss_pred             CcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHH
Q 015178           97 NPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLI  175 (412)
Q Consensus        97 ~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv  175 (412)
                          ....++.++|...   +.++.+++++.++++.|. ++.+++||.++                +++.+|+||..|++
T Consensus        55 ----~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~it~~di~  111 (113)
T cd04622          55 ----PDTTTVGDVMTRG---VVTVTEDDDVDEAARLMREHQVRRLPVVDD----------------DGRLVGIVSLGDLA  111 (113)
T ss_pred             ----cccCCHHHhccCC---ccEECCCCCHHHHHHHHHHcCCCeeeEECC----------------CCcEEEEEEHHHhh
Confidence                1123488998755   788999999999999999 88999999753                25688999999997


Q ss_pred             H
Q 015178          176 R  176 (412)
Q Consensus       176 ~  176 (412)
                      +
T Consensus       112 ~  112 (113)
T cd04622         112 R  112 (113)
T ss_pred             c
Confidence            5

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.04  E-value=2.5e-09  Score=87.50  Aligned_cols=99  Identities=16%  Similarity=0.244  Sum_probs=80.3

Q ss_pred             eEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCccc
Q 015178          117 IRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINS  195 (412)
Q Consensus       117 ~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~  195 (412)
                      +.+++++.++.+|++.|. ++.++++|.++                +++.+|++|..|+.+...           .++.+
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~----------------~g~~~Giv~~~dl~~~~~-----------~~~~~   55 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDSDLRALTVVDA----------------DGQPLGFVTRREAARASG-----------GCCGD   55 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhcCCCEEEEECC----------------CCCEEEEEeHHHHHHhcc-----------cchhh
Confidence            678999999999999988 77888888752                357889999999987421           12333


Q ss_pred             ccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCc
Q 015178          196 LNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFS  247 (412)
Q Consensus       196 L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~d  247 (412)
                        +|.+. +.++.+++++.+|++.|.++++  ..+||+|++|+++|+||..|
T Consensus        56 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~Gvi~~~~  102 (106)
T cd04582          56 --HAEPF-KVTVSVDDDLRIVLSRMFAHDM--SWLPCVDEDGRYVGEVTQRS  102 (106)
T ss_pred             --hcccC-CEEECCCCCHHHHHHHHHHCCC--CeeeEECCCCcEEEEEEHHH
Confidence              46666 7889999999999999999999  99999999899999955333

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.03  E-value=4.4e-09  Score=86.90  Aligned_cols=110  Identities=19%  Similarity=0.256  Sum_probs=90.2

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++++++++ ++++.+|++.|.+++...+||++.                       ++++|+++..|++.++...+.   
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~---   53 (112)
T cd04802           1 KNVITVDP-DTTVYEAANIMTENNIGRLIVVDN-----------------------EKPVGIITERDLVKKVVSRNL---   53 (112)
T ss_pred             CCcEEECC-CCCHHHHHHHHHHCCCCEEEEEEC-----------------------CEEEEEEEHHHHHHHHhhccC---
Confidence            35778899 999999999999999999999993                       489999999999987653210   


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                        .....++.++|...   +..+.+++++.++++.|. ++.+.+||+++                 ++.+|+||..|+++
T Consensus        54 --~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~Gvi~~~di~~  111 (112)
T cd04802          54 --KPREVPVGEVMSTP---LITIDPNASLNEAAKLMAKHGIKRLPVVDD-----------------DELVGIVTTTDIVM  111 (112)
T ss_pred             --CcccCCHHHhcCCC---cEEECCCCCHHHHHHHHHHcCCCeeEEeeC-----------------CEEEEEEEhhhhhc
Confidence              11235688888654   789999999999999999 88889999753                 25789999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.03  E-value=1.3e-09  Score=92.80  Aligned_cols=114  Identities=16%  Similarity=0.177  Sum_probs=86.5

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH-----hhhcc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF-----LCKEE   93 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~-----l~~~~   93 (412)
                      +.++++. ++++.+|++.|.++++..+||.|.                      +++++|+++..|+...     +.+..
T Consensus         2 ~~~~v~~-~~~i~~a~~~~~~~~~~~~~V~d~----------------------~~~~~Giv~~~dl~~~~~~~~~~~~~   58 (126)
T cd04640           2 KPIVIPA-DTSIDEALELMIKHGVRLLLVVDS----------------------DDNFIGVITAVDLLGEEPIKRIQEGG   58 (126)
T ss_pred             CCeEECC-CCcHHHHHHHHHHcCCcEEEEEcC----------------------CCcEEEEEEHHHHhhChhhHHHHHcC
Confidence            3678889 999999999999999999999995                      3689999999999862     22210


Q ss_pred             cCCCcccccCCchhhhccCCCCceEec----CCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178           94 NLLNPESALQDPVSVLLPEASGVIRHL----EPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW  168 (412)
Q Consensus        94 ~l~~~~~~l~~~V~dvm~~~~~~~~tV----~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i  168 (412)
                           ......+++++|... -....+    .+++++.++++.|. ++.+++||++++               ++.++|+
T Consensus        59 -----~~~~~~~v~~im~~~-~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~---------------~~~~~G~  117 (126)
T cd04640          59 -----ISRSELTVADVMTPK-EDLKALDLEELENASVGDVVETLKASGRQHALVVDRE---------------HHQIRGI  117 (126)
T ss_pred             -----CCchheEHHHhcCch-hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC---------------CCEEEEE
Confidence                 011246699999643 011233    36899999999999 899999998631               1468899


Q ss_pred             ecHHHHHH
Q 015178          169 LTQEDLIR  176 (412)
Q Consensus       169 ITq~DIv~  176 (412)
                      ||.+||++
T Consensus       118 it~~di~~  125 (126)
T cd04640         118 ISTSDIAR  125 (126)
T ss_pred             EeHHHHhh
Confidence            99999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.02  E-value=1.9e-09  Score=113.33  Aligned_cols=123  Identities=18%  Similarity=0.132  Sum_probs=98.0

Q ss_pred             chhccccCC-CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            9 GVSDLCIGK-PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         9 ~v~dl~~~~-~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      .|.+++.+. ...+++++ ++|+.+|++.|.+++++.+||+|....                   +++++||||..||..
T Consensus        95 kVk~~~~g~i~~~~tV~p-d~tl~eAl~~m~~~~~~~vpVVD~~~~-------------------~gkLvGIVT~~DLr~  154 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTP-DNTLADVLDLKEKTGHSTVAVTEDGTA-------------------HGKLLGIVTSRDYRI  154 (502)
T ss_pred             HHHHHhcCCcCCCCEeCC-CCcHHHHHHHHHhcCCCeEEEEeCCCc-------------------CCEEEEEEEcHHhhc
Confidence            466776422 23468999 999999999999999999999995211                   368999999999853


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      .  .        ...+.+|+++|+.. .+++++.+++++.+|+++|. ++++++||+++                +++++
T Consensus       155 ~--~--------~~~~~~V~dIMt~~-~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~----------------~g~Lv  207 (502)
T PRK07107        155 S--R--------MSLDTKVKDFMTPF-EKLVTANEGTTLKEANDIIWDHKLNTLPIVDK----------------NGNLV  207 (502)
T ss_pred             c--c--------cCCCCCHHHHhCCC-CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCeEE
Confidence            2  1        12357899999842 23889999999999999999 99999999863                25689


Q ss_pred             eeecHHHHHHHH
Q 015178          167 CWLTQEDLIRYF  178 (412)
Q Consensus       167 ~iITq~DIv~~l  178 (412)
                      |+||..|+++..
T Consensus       208 GIIT~~Dilk~~  219 (502)
T PRK07107        208 YLVFRKDYDSHK  219 (502)
T ss_pred             EEEEhHHHHhcc
Confidence            999999999964

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.02  E-value=3.3e-09  Score=88.97  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=90.9

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++++++. ++++.+|++.|.+++..++||+|.                      .++++|+++..|++..........+.
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~~~~~~~~~~   58 (122)
T cd04635           2 EPVTCTP-DDPVSKVWDLMLESGFTGLPVVQK----------------------AGELIGIITRRDIIRAGSVRTSVEDQ   58 (122)
T ss_pred             CCEEeCC-CCcHHHHHHHHHHcCCCcccEECC----------------------CCcEEEEEEcHHHHhhccccccccch
Confidence            5788999 999999999999999999999985                      36899999999998753211000000


Q ss_pred             ---ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHH
Q 015178           99 ---ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDL  174 (412)
Q Consensus        99 ---~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DI  174 (412)
                         ......++.++|...   +.++.+++++.++++.|. ++.+++||+++                .++.+|++|..|+
T Consensus        59 ~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----------------~g~~~Gvit~~dl  119 (122)
T cd04635          59 QRTQTKASPTVEKIMSTP---VYSVTPDDSIATAVELMLEHDIGRLPVVNE----------------KDQLVGIVDRHDV  119 (122)
T ss_pred             hhhhhhccCcHHHHhcCC---CeeECCCCCHHHHHHHHHHcCCCeeeEEcC----------------CCcEEEEEEhHHh
Confidence               001245688888644   889999999999999999 89999999853                2568999999999


Q ss_pred             HH
Q 015178          175 IR  176 (412)
Q Consensus       175 v~  176 (412)
                      ++
T Consensus       120 ~~  121 (122)
T cd04635         120 LK  121 (122)
T ss_pred             hc
Confidence            75

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.02  E-value=3.4e-09  Score=87.33  Aligned_cols=104  Identities=15%  Similarity=0.204  Sum_probs=88.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++.+++. ++++.+|++.|.+++...+||+|.                      .++++|+++..|+....         
T Consensus         3 ~~~~~~~-~~~~~~a~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~---------   50 (108)
T cd04596           3 DTGYLTT-TDTVKDWHELNKETGHSRFPVVDE----------------------KNKVVGIVTSKDVAGKD---------   50 (108)
T ss_pred             ccEEeCC-CCCHHHHHHHHHHcCCCceeEECC----------------------CCeEEEEecHHHHhccc---------
Confidence            4688899 999999999999999999999985                      36899999999997421         


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                         ...+++++|...   +.++.+++++.++++.|. ++.+.+||+++                +++.+|++|..|+++
T Consensus        51 ---~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~G~it~~di~~  107 (108)
T cd04596          51 ---PDTTIEKVMTKN---PITVNPKTSVASVAHMMIWEGIEMLPVVDD----------------NKKLLGIISRQDVLK  107 (108)
T ss_pred             ---ccccHHHHhcCC---CeEECCCCCHHHHHHHHHHcCCCeeeEEcC----------------CCCEEEEEEHHHhhc
Confidence               135788998644   789999999999999999 89999999753                357899999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.01  E-value=4.4e-09  Score=87.68  Aligned_cols=108  Identities=24%  Similarity=0.186  Sum_probs=85.7

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++++++. ++++.+|++.|.++++..+||+|....                   +++++|+++..|++.. ..       
T Consensus         3 ~~~~i~~-~~~~~~~~~~~~~~~~~~~~V~d~~~~-------------------~~~~~G~v~~~dl~~~-~~-------   54 (114)
T cd04602           3 DPSVLSP-DHTVADVLEIKEKKGFSGIPVTEDGKS-------------------GGKLLGIVTSRDIDFL-TD-------   54 (114)
T ss_pred             CCeEcCC-CCCHHHHHHHHHHcCCCceEEeeCCCc-------------------CCEEEEEEEhHHhhhh-hc-------
Confidence            4678888 999999999999999999999995211                   3689999999998642 11       


Q ss_pred             ccccCCchhhhccCCCCceEec--CCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHL--EPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLI  175 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV--~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv  175 (412)
                         ...+++++|...   ..++  .+++++.++++.|. ++.+++||+++                +++++|+||..|++
T Consensus        55 ---~~~~v~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~----------------~~~~~Gvit~~di~  112 (114)
T cd04602          55 ---SETPLSEVMTPR---EVLVVAPTGITLEEANEILRESKKGKLPIVND----------------DGELVALVTRSDLK  112 (114)
T ss_pred             ---cCCCHHHhcCCC---ceEEECCCCCCHHHHHHHHHhcCCCceeEECC----------------CCeEEEEEEHHHhh
Confidence               125688988644   4455  55999999999999 89999999853                25689999999997


Q ss_pred             H
Q 015178          176 R  176 (412)
Q Consensus       176 ~  176 (412)
                      +
T Consensus       113 ~  113 (114)
T cd04602         113 K  113 (114)
T ss_pred             c
Confidence            5

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.01  E-value=3.9e-09  Score=86.02  Aligned_cols=101  Identities=16%  Similarity=0.144  Sum_probs=85.7

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++++++. ++++.+|++.|.++++..+||+|.                       ++++|+++..|+....         
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~Giv~~~~l~~~~---------   48 (105)
T cd04599           2 DPITIDP-LDSVGRAARLMEKHRIGGLPVVED-----------------------GKLVGIITSRDVRRAH---------   48 (105)
T ss_pred             CCEEECC-CCcHHHHHHHHHHcCCCEEEEEEC-----------------------CEEEEEEehHHhhccc---------
Confidence            4677889 999999999999999999999982                       5899999999997631         


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLI  175 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv  175 (412)
                         ...++.++|...   +.++++++++.++++.|. ++..++||+++                 ++.+|+||..|++
T Consensus        49 ---~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~G~it~~~l~  103 (105)
T cd04599          49 ---PNRLVADAMTRE---VVTISPEASLLEAKRLMEEKKIERLPVLRE-----------------RKLVGIITKGTIA  103 (105)
T ss_pred             ---ccCCHHHHccCC---CEEECCCCCHHHHHHHHHHcCCCEeeEEEC-----------------CEEEEEEEHHHhc
Confidence               124588888644   889999999999999999 89999999752                 4678999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.99  E-value=3.2e-09  Score=87.17  Aligned_cols=106  Identities=23%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++.++++. ++++.+|++.|.+++..++||.|.                      +++++|+++..|+....        
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~--------   50 (110)
T cd04601           2 RDPITVSP-DATVAEALELMAEYGISGLPVVDD----------------------DGKLVGIVTNRDLRFET--------   50 (110)
T ss_pred             CCCeEeCC-CCcHHHHHHHHHHcCCceEEEEcC----------------------CCEEEEEEEhhHeeecc--------
Confidence            35678899 999999999999999999999995                      36899999999986421        


Q ss_pred             cccccCCchhhhccCCCCceEecCC-CCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEP-SASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLI  175 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~-~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv  175 (412)
                         ....++.++|...   +..+.+ ++++.++++.|. ++.+++||+++                .+..+|+||.+|++
T Consensus        51 ---~~~~~v~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvi~~~dil  108 (110)
T cd04601          51 ---DLDKPVSEVMTPE---NLLTTVEGTSLEEALELLHEHKIEKLPVVDD----------------EGKLKGLITVKDIE  108 (110)
T ss_pred             ---cCCCCHHHhcccC---ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC----------------CCCEEEEEEhhhhh
Confidence               1135788888643   455566 999999999999 88889999753                25689999999997


Q ss_pred             H
Q 015178          176 R  176 (412)
Q Consensus       176 ~  176 (412)
                      +
T Consensus       109 ~  109 (110)
T cd04601         109 K  109 (110)
T ss_pred             c
Confidence            5

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.99  E-value=1.3e-08  Score=107.16  Aligned_cols=114  Identities=16%  Similarity=0.016  Sum_probs=95.4

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++++++++ ++|+.+|++.|.++++.++||+|....                   .++++|+||..||.. +.       
T Consensus       108 ~dpvtV~p-d~tV~dA~~lm~~~~~~~lpVvD~~~~-------------------~GklvGIVT~~DL~~-v~-------  159 (505)
T PLN02274        108 SDPVVKSP-SSTISSLDELKASRGFSSVCVTETGTM-------------------GSKLLGYVTKRDWDF-VN-------  159 (505)
T ss_pred             CCCeeeCC-CCcHHHHHHHHHhcCCceEEEEeCCCc-------------------CCeEEEEEEHHHHhh-cc-------
Confidence            57899999 999999999999999999999985211                   268999999999853 21       


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                         ....||+++|+.. .+++++.+++++.+|+++|. ++++++||+++                +++++|+||+.||++
T Consensus       160 ---~~~~~V~eIMt~~-~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~----------------~g~LvGvITr~DIlk  219 (505)
T PLN02274        160 ---DRETKLSEVMTSD-DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE----------------DGELVDLVTRTDVKR  219 (505)
T ss_pred             ---ccCCcHHHHhccC-CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC----------------CCeEEEEEEHHHHHH
Confidence               1257899999733 23789999999999999999 99999999863                356899999999999


Q ss_pred             HHH
Q 015178          177 YFL  179 (412)
Q Consensus       177 ~l~  179 (412)
                      ++.
T Consensus       220 ~~~  222 (505)
T PLN02274        220 VKG  222 (505)
T ss_pred             Hhh
Confidence            875

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.97  E-value=1.1e-08  Score=83.05  Aligned_cols=111  Identities=24%  Similarity=0.267  Sum_probs=89.5

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++++++. ++++.+|++.|.+++...+||++.+                      ++++|+++..|++.++......   
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~G~v~~~~l~~~~~~~~~~---   55 (113)
T cd02205           2 DVVTVSP-DDTVAEALRLMLEHGISGLPVVDDD----------------------GRLVGIVTERDLLRALAEGGLD---   55 (113)
T ss_pred             CceEecC-CCCHHHHHHHHHhcCCceEEEECCC----------------------CCEEEEEeHHHHHHHHHhccCC---
Confidence            4677888 9999999999999999999999952                      5899999999999987642110   


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                         ....+.++|...   +..+.+++++.+++..|. ++.+.++|+++                +++.+|++|+.|++++
T Consensus        56 ---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~i~~~dl~~~  113 (113)
T cd02205          56 ---PLVTVGDVMTRD---VVTVSPDTSLEEAAELMLEHGIRRLPVVDD----------------EGRLVGIVTRSDILRA  113 (113)
T ss_pred             ---ccccHHHHhcCC---ceecCCCcCHHHHHHHHHHcCCCEEEEEcC----------------CCcEEEEEEHHHhhcC
Confidence               011266677644   788999999999999999 77899999853                2578899999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.97  E-value=6.5e-09  Score=90.49  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=81.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++++.+|++.|.++++.++||+|+                      +++++|+++..|+++++.........
T Consensus         2 ~~~~v~~-~~~l~ea~~~m~~~~~~~~~VvD~----------------------~g~l~Givt~~Dl~~~~~~~~~~~~~   58 (133)
T cd04592           2 KYIKVSP-TTTLKEALNLMLDEKQSCVLVVDS----------------------DDFLEGILTLGDIQRFLFTNKTTRVQ   58 (133)
T ss_pred             CceEECC-CCCHHHHHHHHHHcCCCEEEEECC----------------------CCeEEEEEEHHHHHHHHhhccccccc
Confidence            4688999 999999999999999999999996                      36899999999999988642211100


Q ss_pred             c-----cccCCchhhhccCC------CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCC
Q 015178           99 E-----SALQDPVSVLLPEA------SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTK  149 (412)
Q Consensus        99 ~-----~~l~~~V~dvm~~~------~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~  149 (412)
                      .     ......+.++|...      ..+++++.+++++.+|++.|. ++++++||+++..+.
T Consensus        59 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~~  121 (133)
T cd04592          59 PEDETKQTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVDR  121 (133)
T ss_pred             cchhhcccccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcCc
Confidence            0     00112355565311      134889999999999999999 999999999765443

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.95  E-value=4.9e-09  Score=101.36  Aligned_cols=103  Identities=21%  Similarity=0.211  Sum_probs=87.6

Q ss_pred             cchhccccCCCC-eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            8 VGVSDLCIGKPA-LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         8 ~~v~dl~~~~~~-lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      ++|+++|.  ++ .+++++ ++++.+|++.|.+.++..+||+|.                      +++++|+++..|+.
T Consensus       155 ~~v~~im~--~~~~~~v~~-~~~v~~a~~~~~~~~~~~~~Vvd~----------------------~g~~~Givt~~dl~  209 (268)
T TIGR00393       155 VKVKDLMQ--TTDLPLIAP-TTSFKDALLEMSEKRLGSAIVCDE----------------------NNQLVGVFTDGDLR  209 (268)
T ss_pred             hhHHHHhC--CCCCCcCCC-CCcHHHHHHHHhhcCCcEEEEEeC----------------------CCCEEEEEEcHHHH
Confidence            67999995  45 888999 999999999999999999999995                      36899999999998


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCC
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLP  145 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~  145 (412)
                      ..+...       .....+++++|...   +.++.+++++.+|++.|. ++++++||+++
T Consensus       210 ~~~~~~-------~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~  259 (268)
T TIGR00393       210 RALLGG-------GSLKSEVRDFMTLG---PKTFKLDALLLEALEFLERRKITSLVVVDD  259 (268)
T ss_pred             HHHhcC-------CcccCcHHHhCCCC---CeEECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence            865431       12357899999754   789999999999999999 89999999863

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.95  E-value=9.7e-09  Score=83.95  Aligned_cols=105  Identities=18%  Similarity=0.297  Sum_probs=87.7

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      +++++++. +.++.+|++.|.+++...+||.+.                       ++++|+++..||+..  .      
T Consensus         2 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~-----------------------~~~~g~v~~~~l~~~--~------   49 (107)
T cd04610           2 RDVITVSP-DNTVKDVIKLIKETGHDGFPVVDN-----------------------GKVVGIVSARDLLGK--D------   49 (107)
T ss_pred             CCcEEECC-CCcHHHHHHHHHHcCCCeeeEeEC-----------------------CEEEEEEEHHHhhcc--C------
Confidence            46788999 999999999999999999999983                       589999999998752  0      


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                          ...+++++|...   +.++.+++++.++++.|. ++.+++||+++                +++.+|+|+..|+++
T Consensus        50 ----~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~g~~~Gvi~~~di~~  106 (107)
T cd04610          50 ----PDETVEEIMSKD---LVVAVPEMDIMDAARVMFRTGISKLPVVDE----------------NNNLVGIITNTDVIR  106 (107)
T ss_pred             ----ccccHHHhCCCC---CeEECCCCCHHHHHHHHHHhCCCeEeEECC----------------CCeEEEEEEHHHhhc
Confidence                124688888644   788999999999999998 88899999753                257899999999986


Q ss_pred             H
Q 015178          177 Y  177 (412)
Q Consensus       177 ~  177 (412)
                      +
T Consensus       107 ~  107 (107)
T cd04610         107 S  107 (107)
T ss_pred             C
Confidence            3

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.92  E-value=7.3e-09  Score=107.09  Aligned_cols=132  Identities=23%  Similarity=0.281  Sum_probs=104.3

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCC---CceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHIN---QTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG  274 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~---~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~  274 (412)
                      +|+.+ .+++.++.|+.+|+..+++.+-.   ...+-|||++++++|+                   +|.++++.-    
T Consensus       137 ~Mt~e-~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gv-------------------vsl~~Ll~a----  192 (451)
T COG2239         137 IMTTE-FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGV-------------------VSLRDLLTA----  192 (451)
T ss_pred             cceee-eEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEE-------------------eeHHHHhcC----
Confidence            68889 99999999999999999853321   1899999999999999                   555555431    


Q ss_pred             CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHH
Q 015178          275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLM  354 (412)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~  354 (412)
                       +++.                                                       ..+++|.+.++++.++++..
T Consensus       193 -~~~~-------------------------------------------------------~i~~im~~~~~~V~~~~dqe  216 (451)
T COG2239         193 -EPDE-------------------------------------------------------LLKDLMEDDVVSVLADDDQE  216 (451)
T ss_pred             -CcHh-------------------------------------------------------HHHHHhcccceeecccCCHH
Confidence             0000                                                       12346778899999999999


Q ss_pred             HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH----Hhhccc-cC-CCCCcccc
Q 015178          355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR----LRSMAK-AE-NPNFCPVW  409 (412)
Q Consensus       355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~----~~~~~~-~~-~~~~~~~~  409 (412)
                      ++++.+.+++.-.+||||++++++|+||..|++..+.++    .+.|++ .+ .=-+||+|
T Consensus       217 evA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G~~~~~~~~~~v~  277 (451)
T COG2239         217 EVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAGPLDVPDLFASVL  277 (451)
T ss_pred             HHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcCCCCCchhccCHH
Confidence            999999999999999999999999999999999999765    445666 12 22467766

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.92  E-value=7.9e-09  Score=107.71  Aligned_cols=118  Identities=21%  Similarity=0.202  Sum_probs=97.0

Q ss_pred             hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178           10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL   89 (412)
Q Consensus        10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l   89 (412)
                      +.+++.  ++++++++ ++|+.+|++.|.+++++++||+|.+..                   .++++|+|+..|+....
T Consensus        82 ~~~~~~--~~~vtl~~-~~tv~eal~~m~~~~~s~lpVvd~~~~-------------------~~~lvGIVt~rDL~~~~  139 (450)
T TIGR01302        82 AENGII--SDPVTISP-ETTVADVLELMERKGISGIPVVEDGDM-------------------TGKLVGIITKRDIRFVK  139 (450)
T ss_pred             ccCcee--cCceEeCC-CCCHHHHHHHHHHcCCCEEEEEeCCCC-------------------CCeEEEEEEHHHHhhhh
Confidence            455654  57899999 999999999999999999999995310                   15899999999996421


Q ss_pred             hhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178           90 CKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW  168 (412)
Q Consensus        90 ~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i  168 (412)
                       .          ...+++++|..  .+++++.+++++.++++.|. ++.+++||+++                .++++|+
T Consensus       140 -~----------~~~~V~dvm~~--~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe----------------~G~lvGi  190 (450)
T TIGR01302       140 -D----------KGKPVSEVMTR--EEVITVPEGIDLEEALKVLHEHRIEKLPVVDK----------------NGELVGL  190 (450)
T ss_pred             -c----------CCCCHHHhhCC--CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC----------------CCcEEEE
Confidence             0          14679999972  13899999999999999999 89999999864                3678999


Q ss_pred             ecHHHHHHHH
Q 015178          169 LTQEDLIRYF  178 (412)
Q Consensus       169 ITq~DIv~~l  178 (412)
                      ||..||++.+
T Consensus       191 VT~~DIl~~~  200 (450)
T TIGR01302       191 ITMKDIVKRR  200 (450)
T ss_pred             EEhHHhhhcc
Confidence            9999999976

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.91  E-value=1.5e-08  Score=84.63  Aligned_cols=115  Identities=19%  Similarity=0.200  Sum_probs=89.9

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      ++.+++. ++++.+|++.|.+++...+||+|.                      +++++|+++..|++............
T Consensus         2 ~~~~~~~-~~~l~~a~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~~~~~~~~~~   58 (121)
T cd04584           2 DVVTITP-TTTIAEALELMREHKIRHLPVVDE----------------------EGRLVGIVTDRDLRDASPSPFTTLSE   58 (121)
T ss_pred             CCEEECC-CCCHHHHHHHHHHcCCCcccEECC----------------------CCcEEEEEEHHHHHHHhhhhcccchh
Confidence            5678899 999999999999999999999995                      36899999999998765421000000


Q ss_pred             ---ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHH
Q 015178           99 ---ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDL  174 (412)
Q Consensus        99 ---~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DI  174 (412)
                         ......++.++|...   ++++.+++++.++++.|. ++.+.+||.++                 ++.+|++|..||
T Consensus        59 ~~~~~~~~~~v~~~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-----------------~~~~Gvv~~~di  118 (121)
T cd04584          59 HELYLLLKMPVKEIMTKD---VITVHPLDTVEEAALLMREHRIGCLPVVED-----------------GRLVGIITETDL  118 (121)
T ss_pred             hhhhhhcCcCHHHHhhCC---CeEECCCCcHHHHHHHHHHcCCCeEEEeeC-----------------CEEEEEEEHHHh
Confidence               011235688888754   789999999999999998 78888988742                 467899999999


Q ss_pred             HH
Q 015178          175 IR  176 (412)
Q Consensus       175 v~  176 (412)
                      ++
T Consensus       119 ~~  120 (121)
T cd04584         119 LR  120 (121)
T ss_pred             hc
Confidence            75

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.91  E-value=1.5e-08  Score=83.15  Aligned_cols=99  Identities=12%  Similarity=0.063  Sum_probs=83.0

Q ss_pred             EEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCccc
Q 015178           21 RSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPES  100 (412)
Q Consensus        21 v~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~~  100 (412)
                      +++++ ++++.+|++.|.++++..+||+|.                       ++++|+++..|+....           
T Consensus         4 ~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~-----------   48 (104)
T cd04594           4 IKVKD-YDKVYEAKRIMIENDLLSLPVVDY-----------------------NKFLGAVYLKDIENAT-----------   48 (104)
T ss_pred             eEECC-CCCHHHHHHHHHHcCCcEEEEEEC-----------------------CEEEEEEEHHHHhhhc-----------
Confidence            56788 999999999999999999999994                       4799999999997631           


Q ss_pred             ccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178          101 ALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus       101 ~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                        ..++.++|...   ..++++++++.++++.|. ++.+++||+++                 ++.+|+||+.|+++
T Consensus        49 --~~~~~~~~~~~---~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-----------------~~~iGvit~~dl~~  103 (104)
T cd04594          49 --YGDVVDYIVRG---IPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-----------------GKFKGIVTLDSILD  103 (104)
T ss_pred             --ccchhhhhhcC---CcEEcCCCCHHHHHHHHHHcCcceEEEEEC-----------------CEEEEEEEHHHhhc
Confidence              13466777544   689999999999999999 88999999742                 46789999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PRK11573 hypothetical protein; Provisional

Probab=98.91  E-value=4e-08  Score=101.31  Aligned_cols=165  Identities=11%  Similarity=0.100  Sum_probs=119.5

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      -|..++|+|+|....++++++. ++|+.++++.+.+++.+.+||++.+                     .+.++|++...
T Consensus       183 ~l~~~~v~eiMtPr~~i~~l~~-~~~~~e~~~~~~~~~~SR~PVy~~~---------------------~D~IiGiv~~k  240 (413)
T PRK11573        183 DLEKVTVDDIMVPRNEIVGIDI-NDDWKSILRQLTHSPHGRIVLYRDS---------------------LDDAISMLRVR  240 (413)
T ss_pred             ccCCCChhhcCCccceEEEEEC-CCCHHHHHHHHHhCCCceEEEEcCC---------------------CCceEEEEEHH
Confidence            3678899999998889999999 9999999999999999999999853                     35799999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      |++.++.+....      -...+.+++.    |+..|.++.++.++++.|. ++.|=..|+++                -
T Consensus       241 Dll~~~~~~~~~------~~~~l~~~~r----~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE----------------y  294 (413)
T PRK11573        241 EAYRLMTEKKEF------TKENMLRAAD----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE----------------Y  294 (413)
T ss_pred             HHHHHhhccCcC------CHHHHHhhcc----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec----------------C
Confidence            999865431110      0112334442    3688999999999999999 55555555542                3


Q ss_pred             CCeeeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI  220 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m  220 (412)
                      |...|+||.+||+.-+.... ++........+..   ...+ .+.+....++.+.-+.+
T Consensus       295 G~~~GiVTleDilEeivGei~de~d~~~~~~i~~---~~~~-~~~v~G~~~l~d~~~~l  349 (413)
T PRK11573        295 GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTP---QNDG-SVIIDGTANVREINKAF  349 (413)
T ss_pred             CCeEEEeeHHHHHHHHhCCCCcccCcccccceEE---ecCC-EEEEEeeeEHHHHHHHh
Confidence            56789999999999876432 2222111111221   1233 78899999998888877

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.90  E-value=1e-08  Score=84.61  Aligned_cols=101  Identities=22%  Similarity=0.215  Sum_probs=83.1

Q ss_pred             EecCCchHHHHHHHHHhcC-----CceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           23 LSVSSSTVADALSALKRLN-----ESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        23 v~~~~~tv~~A~~~L~~~~-----I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      +++ ++|+.+|++.|.+++     ...+||+|.                      .++++|+++..|++..  .      
T Consensus         2 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vvd~----------------------~~~~~G~v~~~~l~~~--~------   50 (109)
T cd04606           2 VRE-DWTVGEALEYLRRNADDPETIYYIYVVDE----------------------EGRLLGVVSLRDLLLA--D------   50 (109)
T ss_pred             ccc-cCcHHHHHHHHHhccCcccceeEEEEECC----------------------CCCEEEEEEHHHHhcC--C------
Confidence            456 889999999999888     578999985                      3579999999998751  0      


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                          ...+++++|...   +..+.+++++.++++.|. ++.+.+||+++                +++.+|+||..|+++
T Consensus        51 ----~~~~v~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvit~~dll~  107 (109)
T cd04606          51 ----PDTPVSDIMDTD---VISVSADDDQEEVARLFEKYDLLALPVVDE----------------EGRLVGIITVDDVID  107 (109)
T ss_pred             ----CcchHHHHhCCC---CeEEcCCCCHHHHHHHHHHcCCceeeeECC----------------CCcEEEEEEhHHhhh
Confidence                135688888644   789999999999999999 88889999753                256899999999987


Q ss_pred             H
Q 015178          177 Y  177 (412)
Q Consensus       177 ~  177 (412)
                      .
T Consensus       108 ~  108 (109)
T cd04606         108 V  108 (109)
T ss_pred             h
Confidence            5

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.89  E-value=2.2e-08  Score=87.41  Aligned_cols=114  Identities=22%  Similarity=0.283  Sum_probs=89.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcc---cC
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEE---NL   95 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~---~l   95 (412)
                      ++++++. ++++.+|++.|.++++.++||++.                       ++++|+++..|+.+++....   .+
T Consensus         2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~Vvd~-----------------------~~~~G~v~~~dl~~~~~~~~~~~~~   57 (143)
T cd04634           2 NPITCNA-DDTISDAARLLRENKISGAPVLDG-----------------------GKLVGIVSESDILKLLVTHDPSGNL   57 (143)
T ss_pred             CcEEecC-CCCHHHHHHHHHHcCCCcceEeEC-----------------------CeEEEEecHHHHHHHHHhccCcccc
Confidence            5788999 999999999999999999999994                       47999999999998775321   00


Q ss_pred             CC--c---------------------ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCC
Q 015178           96 LN--P---------------------ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQ  151 (412)
Q Consensus        96 ~~--~---------------------~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~  151 (412)
                      ..  .                     ......++.++|...   +.++.+++++.+++..|. ++.+++||++.      
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------  128 (143)
T cd04634          58 WLPSPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKK---VITISPDASIEDAAELMVRHKIKRLPVVED------  128 (143)
T ss_pred             ccCCcceeeeccchheeehHHHHHHHHHHhcCCHHHHcCCC---CeEECCCCcHHHHHHHHHHcCCCEEEEEEC------
Confidence            00  0                     001234677777644   889999999999999999 88889998742      


Q ss_pred             CCCCCCcccCCCCeeeeecHHHHHH
Q 015178          152 PKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus       152 ~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                                 ++.+|+||..|+++
T Consensus       129 -----------~~~~Gvvt~~dl~~  142 (143)
T cd04634         129 -----------GRLVGIVTRGDIIE  142 (143)
T ss_pred             -----------CEEEEEEEHHHhhc
Confidence                       45789999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.85  E-value=1.5e-08  Score=106.53  Aligned_cols=119  Identities=24%  Similarity=0.149  Sum_probs=96.4

Q ss_pred             hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178           10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL   89 (412)
Q Consensus        10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l   89 (412)
                      ..+.++  .+.+++++ ++|+.+|+++|.++++..+||++.+..                   .++++|||+..||. +.
T Consensus        98 ~e~g~i--~dpvtv~p-d~tv~eA~~lm~~~~~s~vpVvd~~~~-------------------~gkLvGIVt~~DL~-~~  154 (495)
T PTZ00314         98 FENGFI--MDPYVLSP-NHTVADVLEIKEKKGFSSILITVDGKV-------------------GGKLLGIVTSRDID-FV  154 (495)
T ss_pred             cccccc--cCCeecCC-CCCHHHHHHHHHHcCCcEEEEEeCCcc-------------------CCeEEEEEEHHHHh-hc
Confidence            445554  46789999 999999999999999999999995311                   36899999999986 22


Q ss_pred             hhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178           90 CKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW  168 (412)
Q Consensus        90 ~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i  168 (412)
                      .          ....+|+++|+.. .+++++.+++++.+|+++|. ++++++||+++                ++.++|+
T Consensus       155 ~----------~~~~~V~diMt~~-~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~----------------~g~liGI  207 (495)
T PTZ00314        155 K----------DKSTPVSEVMTPR-EKLVVGNTPISLEEANEVLRESRKGKLPIVND----------------NGELVAL  207 (495)
T ss_pred             c----------cCCCCHHHhhCCc-CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC----------------CCcEEEE
Confidence            1          1246799999741 13889999999999999999 99999999864                3568899


Q ss_pred             ecHHHHHHHH
Q 015178          169 LTQEDLIRYF  178 (412)
Q Consensus       169 ITq~DIv~~l  178 (412)
                      ||.+||++..
T Consensus       208 IT~~DIl~~~  217 (495)
T PTZ00314        208 VSRSDLKKNR  217 (495)
T ss_pred             EEehHhhhcc
Confidence            9999999874

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.85  E-value=2.6e-08  Score=82.45  Aligned_cols=100  Identities=17%  Similarity=0.211  Sum_probs=81.4

Q ss_pred             ceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcc
Q 015178          116 VIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPIN  194 (412)
Q Consensus       116 ~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~  194 (412)
                      .+..+.+++++.++.+.|. .+..++||.+...             .+++.+|+|+..|+.+....              
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------------~~~~~~G~v~~~dl~~~~~~--------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-------------ESPRLVGYILRSQLVVALKN--------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCC-------------CCCEEEEEEeHHHHHHHHHH--------------
Confidence            3678899999999999998 6788888875310             03578899999999887642              


Q ss_pred             cccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccC
Q 015178          195 SLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFN  249 (412)
Q Consensus       195 ~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~  249 (412)
                         +|.++ +.++.+++++.++++.|.+++.  ..+||++ +|+++|+||..||.
T Consensus        56 ---~m~~~-~~~v~~~~~l~~~~~~~~~~~~--~~~pVv~-~~~~~Gvvt~~dl~  103 (105)
T cd04591          56 ---YIDPS-PFTVSPRTSLEKVHQLFRKLGL--RHLLVVD-EGRLVGIITRKDLL  103 (105)
T ss_pred             ---hccCC-CceECCCCcHHHHHHHHHHcCC--CEEEEEE-CCeEEEEEEhhhhh
Confidence               46667 8899999999999999999999  9999995 68999997655553

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.78  E-value=2.1e-08  Score=73.62  Aligned_cols=56  Identities=20%  Similarity=0.310  Sum_probs=51.2

Q ss_pred             hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178           10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL   89 (412)
Q Consensus        10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l   89 (412)
                      |+++|.  ++++++++ ++|+.+|++.|.++++.++||+|+                      +++++|+++..||++++
T Consensus         1 v~~~m~--~~~~~v~~-~~~l~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMT--PPPITVSP-DDSLEEALEIMRKNGISRLPVVDE----------------------DGKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSB--SSSEEEET-TSBHHHHHHHHHHHTSSEEEEEST----------------------TSBEEEEEEHHHHHHHH
T ss_pred             CeECCc--CCCEEEcC-cCcHHHHHHHHHHcCCcEEEEEec----------------------CCEEEEEEEHHHHHhhh
Confidence            578885  58999999 999999999999999999999996                      36899999999999987


Q ss_pred             h
Q 015178           90 C   90 (412)
Q Consensus        90 ~   90 (412)
                      .
T Consensus        56 ~   56 (57)
T PF00571_consen   56 L   56 (57)
T ss_dssp             H
T ss_pred             h
Confidence            5

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.75  E-value=9.8e-08  Score=79.60  Aligned_cols=112  Identities=22%  Similarity=0.167  Sum_probs=86.0

Q ss_pred             CeEEEecCCchHHHHHHHHHhcC-CceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           19 ALRSLSVSSSTVADALSALKRLN-ESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~-I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++.++++ ++++.+|++.|.+++ +..+||+|+                       ++++|+++..|++..+....   .
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Vvd~-----------------------~~~~G~v~~~~l~~~~~~~~---~   54 (119)
T cd04598           2 PAPTVSP-DTTVNDVLERFERDPDLSALAVVDD-----------------------GRPVGLIMREALMELLSTPY---G   54 (119)
T ss_pred             CcCccCC-CCcHHHHHHHHHhCCCccEEEEEEC-----------------------CeeEEEEEHHHHHHHHhchh---h
Confidence            4567888 999999999999887 999999995                       37999999999987654310   0


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCce---eeecCCCCCCCCCCCCCCcccCCCCeeeeecHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQN---LVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQED  173 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~R---l~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~D  173 (412)
                      .......++.++|...   +.++.+++++.+++..|. ++.++   .+|+++                .++.+|+||..|
T Consensus        55 ~~~~~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~----------------~~~~~Gvvs~~d  115 (119)
T cd04598          55 RALYGKKPVSEVMDPD---PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE----------------EGRYLGIGTVKD  115 (119)
T ss_pred             HHHHcCCcHHHhcCCC---cEEecCCCCHHHHHHHHHcCCcccccccEEEee----------------CCeEEEEEEHHH
Confidence            0001245799999755   889999999999999998 66543   355532                357899999999


Q ss_pred             HHH
Q 015178          174 LIR  176 (412)
Q Consensus       174 Iv~  176 (412)
                      +++
T Consensus       116 i~~  118 (119)
T cd04598         116 LLR  118 (119)
T ss_pred             Hhc
Confidence            975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11573 hypothetical protein; Provisional

Probab=98.74  E-value=2.5e-07  Score=95.42  Aligned_cols=130  Identities=13%  Similarity=0.139  Sum_probs=101.4

Q ss_pred             CCCcccccCCCC-CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178          190 NQPINSLNIVDD-AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDL  267 (412)
Q Consensus       190 ~~~i~~L~i~~~-~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl  267 (412)
                      .+++++  +|++ ..+++++.+.++.++++.+.+++.  +.+||.+++ ..++|+                   +..+|+
T Consensus       186 ~~~v~e--iMtPr~~i~~l~~~~~~~e~~~~~~~~~~--SR~PVy~~~~D~IiGi-------------------v~~kDl  242 (413)
T PRK11573        186 KVTVDD--IMVPRNEIVGIDINDDWKSILRQLTHSPH--GRIVLYRDSLDDAISM-------------------LRVREA  242 (413)
T ss_pred             CCChhh--cCCccceEEEEECCCCHHHHHHHHHhCCC--ceEEEEcCCCCceEEE-------------------EEHHHH
Confidence            556666  5663 239999999999999999999999  999999765 589999                   678887


Q ss_pred             hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178          268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC  347 (412)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~  347 (412)
                      +.+...+...              ....+                                        .++ .++++.+
T Consensus       243 l~~~~~~~~~--------------~~~~l----------------------------------------~~~-~r~~~~V  267 (413)
T PRK11573        243 YRLMTEKKEF--------------TKENM----------------------------------------LRA-ADEIYFV  267 (413)
T ss_pred             HHHhhccCcC--------------CHHHH----------------------------------------Hhh-ccCCeEe
Confidence            7532110000              00000                                        011 2578899


Q ss_pred             CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178          348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM  397 (412)
Q Consensus       348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~  397 (412)
                      +++.++.++++.|.+++.|=.-|||+-|..+|+||..||+..+.......
T Consensus       268 pe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de  317 (413)
T PRK11573        268 PEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTS  317 (413)
T ss_pred             CCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcc
Confidence            99999999999999999999999999999999999999999999776543

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.72  E-value=1.5e-07  Score=77.14  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=84.8

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++.. ++++.+|++.|.+++.+.+||++.                      +++++|+++..|++...   .     
T Consensus         2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~~g~v~~~~l~~~~---~-----   50 (106)
T cd04638           2 NVVYVTL-PGTRDDVLELLKEYKVSGVPVVKK----------------------SGELVGIITRKDLLRNP---E-----   50 (106)
T ss_pred             CcEEECC-CCCHHHHHHHHHHcCCCeEEEEcC----------------------CCcEEEEEEHHHHHhcc---c-----
Confidence            4788888 999999999999999999999995                      35799999999997521   0     


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                          ..++.++|...   +.++.+++++.+++..|. ++.+.+||+++                 ++.+|+||..|+++
T Consensus        51 ----~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----------------~~~~G~it~~d~~~  105 (106)
T cd04638          51 ----EEQLALLMTRD---PPTVSPDDDVKEAAKLMVENNIRRVPVVDD-----------------GKLVGIVTVADIVR  105 (106)
T ss_pred             ----cchHHHHhcCC---CceECCCCCHHHHHHHHHHcCCCEEEEEEC-----------------CEEEEEEEHHHhhc
Confidence                13477777644   788999999999999999 88999999752                 35789999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.65  E-value=1.4e-07  Score=92.89  Aligned_cols=119  Identities=16%  Similarity=0.248  Sum_probs=104.4

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      .+|.|+|..-.+...+.. +++|++=.++--+.|.+.-||+|.                      ..+++|+|+++|++.
T Consensus       188 ~~Vedi~~P~~~~~yL~~-~d~v~d~~~l~~kt~~sRfPVvn~----------------------~~kvvGvVt~rDv~~  244 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRE-TDTVEDWLDLVEKTGHSRFPVVNR----------------------SMKVVGVVTMRDVLD  244 (432)
T ss_pred             eeHHHhccccccceeccc-cccHHHHHHHHHHcCCCccceecc----------------------cceEEEEEEehhhhc
Confidence            358899976667899999 999999999999999999999995                      468999999999876


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      .-            -.+++.-+|+++   +++|.+.+|+..+...|. .|+.=+||+++                +.+.+
T Consensus       245 ~~------------~~t~ieKVMtkn---p~tv~~~tsVAsvaq~MiwE~iem~PVv~~----------------n~~ll  293 (432)
T COG4109         245 KK------------PSTTIEKVMTKN---PITVRAKTSVASVAQMMIWEGIEMLPVVDS----------------NNTLL  293 (432)
T ss_pred             CC------------CCccHHHHhccC---CeeecccchHHHHHHHHHhccceeeeEEcC----------------CceEE
Confidence            41            147899999987   899999999999999999 99999999974                35789


Q ss_pred             eeecHHHHHHHHHH
Q 015178          167 CWLTQEDLIRYFLN  180 (412)
Q Consensus       167 ~iITq~DIv~~l~~  180 (412)
                      |+||+.|+++.+..
T Consensus       294 GiitR~dvlk~lq~  307 (432)
T COG4109         294 GIITRQDVLKSLQM  307 (432)
T ss_pred             EEEEHHHHHHHHHH
Confidence            99999999998865

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.62  E-value=5.1e-07  Score=91.66  Aligned_cols=109  Identities=22%  Similarity=0.265  Sum_probs=88.5

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL  283 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~  283 (412)
                      .....++.+..++++.|..++.  ..+.|+|+++++.|.                   ++..++..+...+.        
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-------------------~~~~~~~~~~~~~~--------  302 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERV--DSLYVVDRQNKLVGV-------------------VDVESIKQARKKAQ--------  302 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCC--ceEEEEcCCCCEEEE-------------------EeHHHHHHHhhcCC--------
Confidence            4566778899999999999998  999999999999999                   55666655431100        


Q ss_pred             HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178          284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR  363 (412)
Q Consensus       284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~  363 (412)
                                                                         .+.+.+...+.++.++++|.+++..|.++
T Consensus       303 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (363)
T TIGR01186       303 ---------------------------------------------------GLQDVLIDDIYTVDAGTLLRETVRKVLKA  331 (363)
T ss_pred             ---------------------------------------------------chhhhhccCCceECCCCcHHHHHHHHHhC
Confidence                                                               01123445678899999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          364 RVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       364 ~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +.. +||||++|+++|+||+.++++++...
T Consensus       332 ~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       332 GIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             CCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence            999 99999999999999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.60  E-value=1.2e-06  Score=90.89  Aligned_cols=163  Identities=17%  Similarity=0.143  Sum_probs=116.7

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      -|.+++++++|....+++.++. +.+++++.+.+.+++.+.+||++.+                     .+.++|++...
T Consensus       202 ~l~~~~v~eiMtPR~~i~~l~~-~~~~~~~~~~~~~~~~SR~PV~~~~---------------------~D~iiGiv~~K  259 (429)
T COG1253         202 DLDDRTVREIMTPRTDIVALDL-TDTVEELIELILESGHSRIPVYDGD---------------------LDNIIGIVHVK  259 (429)
T ss_pred             ccCCcEeeeEeeecccEEEEcC-CCCHHHHHHHHHhCCCCeeeEEcCC---------------------CCcEEEEEEHH
Confidence            3678999999998789999999 9999999999999999999999932                     36799999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      |++.++...+. .   ......+        .|++.|.+..++.++++.|. ++.|=..|+++                -
T Consensus       260 dll~~~~~~~~-~---~~~~~~~--------~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE----------------y  311 (429)
T COG1253         260 DLLRALLDGQS-D---LDLRVLV--------RPPLFVPETLSLSDLLEEFREERTHMAIVVDE----------------Y  311 (429)
T ss_pred             HHHHHHhcCcc-c---cchhhcc--------cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc----------------C
Confidence            99999876322 0   0011112        14789999999999999999 55555555542                2


Q ss_pred             CCeeeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI  220 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m  220 (412)
                      |...|+||.+||+.-+.... ++.+......+-.   ...+ -+.+....++.+..+.+
T Consensus       312 G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~---~~~~-~~~v~G~~~l~e~~~~l  366 (429)
T COG1253         312 GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQ---RDDD-GWLVDGRVPLEELEELL  366 (429)
T ss_pred             CCeEEEeEHHHHHHHHhCCCcCcccccccccceE---ecCC-cEEEeccccHHHHHHHh
Confidence            57889999999999886432 1121100111111   1133 36788888887766665

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=1.1e-06  Score=90.20  Aligned_cols=105  Identities=16%  Similarity=0.174  Sum_probs=83.7

Q ss_pred             EeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHH
Q 015178          207 IQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQ  286 (412)
Q Consensus       207 v~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~  286 (412)
                      ..++.+..+|++.|..++.  ..+.|+|++++++|.                   ++..++......+.           
T Consensus       290 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-------------------~~~~~~~~~~~~~~-----------  337 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDR--EYGYVIERGNKFVGA-------------------VSIDSLKTALTQQQ-----------  337 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCC--ceEEEEcCCCcEEEE-------------------EeHHHHHhhhhcCC-----------
Confidence            4467789999999999999  999999999999999                   55666544221000           


Q ss_pred             HhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCc
Q 015178          287 RLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVS  366 (412)
Q Consensus       287 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ih  366 (412)
                                                                      ...+.+.....++.++++|.+++..|.++...
T Consensus       338 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (400)
T PRK10070        338 ------------------------------------------------GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA  369 (400)
T ss_pred             ------------------------------------------------chhhhhccCCceeCCCCCHHHHHHHHHhCCCc
Confidence                                                            00112345578899999999999999997766


Q ss_pred             EEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          367 YVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       367 rl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                       +||||++|+++|+||+.++++++..
T Consensus       370 -~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        370 -VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             -EEEECCCCcEEEEEEHHHHHHHHHh
Confidence             9999999999999999999999865

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.40  E-value=4.1e-06  Score=86.97  Aligned_cols=127  Identities=20%  Similarity=0.267  Sum_probs=100.2

Q ss_pred             CCCcccccCCCC-CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178          190 NQPINSLNIVDD-AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDISPFSFNSCDETVAAAMVTLSAGDL  267 (412)
Q Consensus       190 ~~~i~~L~i~~~-~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl  267 (412)
                      .+++++  +|++ ..++.+..+.++.++.+.+.+++.  |.+||.++ ...++|+                   +..+|+
T Consensus       205 ~~~v~e--iMtPR~~i~~l~~~~~~~~~~~~~~~~~~--SR~PV~~~~~D~iiGi-------------------v~~Kdl  261 (429)
T COG1253         205 DRTVRE--IMTPRTDIVALDLTDTVEELIELILESGH--SRIPVYDGDLDNIIGI-------------------VHVKDL  261 (429)
T ss_pred             CcEeee--EeeecccEEEEcCCCCHHHHHHHHHhCCC--CeeeEEcCCCCcEEEE-------------------EEHHHH
Confidence            556666  5663 349999999999999999999998  99999993 3589999                   678888


Q ss_pred             hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178          268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC  347 (412)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~  347 (412)
                      +.+...+.                . .                         .      ..        ... -++++.+
T Consensus       262 l~~~~~~~----------------~-~-------------------------~------~~--------~~~-~~~~~~V  284 (429)
T COG1253         262 LRALLDGQ----------------S-D-------------------------L------DL--------RVL-VRPPLFV  284 (429)
T ss_pred             HHHHhcCc----------------c-c-------------------------c------ch--------hhc-ccCCeEe
Confidence            77431100                0 0                         0      00        000 1378999


Q ss_pred             CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      ++..++.+++++|.+++.|=--|+|+-|...|+||..||+..+.-.+..
T Consensus       285 pet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~d  333 (429)
T COG1253         285 PETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPD  333 (429)
T ss_pred             cCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999999999976553

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.30  E-value=1.1e-06  Score=88.18  Aligned_cols=106  Identities=13%  Similarity=0.142  Sum_probs=86.5

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC---CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE---GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL  280 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~  280 (412)
                      ++.++|+.++.++++....+++  +++||.++.   +||||+||                   .+|+-.. .        
T Consensus       118 p~v~sp~~tvg~v~~~k~~~gF--~g~pvTe~g~~~~KLvG~vt-------------------srdi~f~-~--------  167 (503)
T KOG2550|consen  118 PIVISPTTTVGEVKEAKEKHGF--SGIPVTEDGKRGSKLVGIIT-------------------SRDIQFL-E--------  167 (503)
T ss_pred             CcccCCcccchhhhhhcccccc--cccccccCCcccceeEEEEe-------------------hhhhhhh-h--------
Confidence            6778999999999999999999  999999653   49999955                   4444221 0        


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178          281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA  360 (412)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m  360 (412)
                                           +.                             .....++|+...++...+.+|.++=+.+
T Consensus       168 ---------------------~~-----------------------------~~~~~~vmt~~~~~~~~gi~l~~~neiL  197 (503)
T KOG2550|consen  168 ---------------------DN-----------------------------SLLVSDVMTKNPVTGAQGITLKEANEIL  197 (503)
T ss_pred             ---------------------cc-----------------------------cchhhhhcccccccccccccHHHHHHHH
Confidence                                 00                             0012356888789999999999999999


Q ss_pred             HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      .+++-.++||||++|.||-||+++|+.+.
T Consensus       198 ~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  198 KKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             HhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            99999999999999999999999999875

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.23  E-value=3.7e-06  Score=57.59  Aligned_cols=47  Identities=23%  Similarity=0.339  Sum_probs=43.5

Q ss_pred             ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          344 AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       344 vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      +.++.+++++.++++.|.+++.+++||++++++++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            57789999999999999999999999999888999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.22  E-value=1.3e-05  Score=79.98  Aligned_cols=165  Identities=12%  Similarity=0.176  Sum_probs=115.6

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      |..+||+|+|....++..++. +++.++.++.+...--..+|||..+                     -+..+||+..+|
T Consensus       197 Le~~tV~DIMvpR~~i~~id~-d~~~e~iv~ql~~s~HtRiplyr~~---------------------~DnIiGvlh~r~  254 (423)
T COG4536         197 LENLTVSDIMVPRNEIIGIDI-DDPWEEIVRQLLHSPHTRIPLYRDD---------------------LDNIIGVLHVRD  254 (423)
T ss_pred             cccceeeeeeccccceeeecC-CCCHHHHHHHHhhCCCCceeeecCC---------------------hhHhhhhhhHHH
Confidence            568999999998889999999 9999999999999999999999854                     246999999999


Q ss_pred             HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178           85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDS  164 (412)
Q Consensus        85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~  164 (412)
                      +++.+.+.++..      +..+..+..    .+|.|+.+++|.+-+.-|.++-+|+-++.++               =|.
T Consensus       255 llr~l~e~~~~~------k~d~~~~a~----epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---------------YG~  309 (423)
T COG4536         255 LLRLLNEKNEFT------KEDILRAAD----EPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---------------YGD  309 (423)
T ss_pred             HHHHhhccCccc------HhHHHHHhc----CCeecCCCCcHHHHHHHHHHhcceEEEEEec---------------cCc
Confidence            999998754321      111222222    3699999999999999999555666444442               256


Q ss_pred             eeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178          165 EYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI  220 (412)
Q Consensus       165 ~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m  220 (412)
                      +.|+||-+||+.=+.   +.+.+.......++ .-..++-+-+..+.++.|.=+.|
T Consensus       310 i~GLVTLEDIlEEIV---Gdftde~d~~~~ev-~~q~dgs~iidGs~~iRdlNr~l  361 (423)
T COG4536         310 IQGLVTLEDILEEIV---GDFTDEHDTLAKEV-IPQSDGSFIIDGSANVRDLNRAL  361 (423)
T ss_pred             EEeeeeHHHHHHHHh---ccccccCcccchhh-cccCCCcEEEeCCCcHHHHHHhc
Confidence            789999999998664   22322212222221 11223345566677765544433

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.22  E-value=2.4e-06  Score=71.82  Aligned_cols=53  Identities=21%  Similarity=0.280  Sum_probs=49.5

Q ss_pred             ccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          336 ARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       336 a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      +.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..||.+
T Consensus        60 v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          60 VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             HHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            56788889999999999999999999999999999999899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.17  E-value=4e-06  Score=86.99  Aligned_cols=113  Identities=18%  Similarity=0.279  Sum_probs=90.9

Q ss_pred             CchhhhccCCCCceEecCCCCcHHHHHHHHh-c-----CCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178          104 DPVSVLLPEASGVIRHLEPSASLLEAVDLLL-G-----GVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus       104 ~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~-----gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                      ..++.+|+..   ++++.++.|+.+++..+. .     .+..+.|++                +.+++.|++|-++++..
T Consensus       132 ~taG~~Mt~e---~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD----------------~~~~L~Gvvsl~~Ll~a  192 (451)
T COG2239         132 DTAGRIMTTE---FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD----------------EKGKLLGVVSLRDLLTA  192 (451)
T ss_pred             hhhhccceee---eEEeccCcCHHHHHHHHHHhcccccccceEEEEC----------------CccceEEEeeHHHHhcC
Confidence            4577788766   999999999999998887 2     244455554                33578999999998632


Q ss_pred             HHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178          178 FLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS  250 (412)
Q Consensus       178 l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~  250 (412)
                                -+...+++  +|.+. ++++.+++...++.+++.++++  -++||||++++++|+||..|+..
T Consensus       193 ----------~~~~~i~~--im~~~-~~~V~~~~dqeevA~~~~~ydl--~a~PVVd~~~~LiG~itiDDiid  250 (451)
T COG2239         193 ----------EPDELLKD--LMEDD-VVSVLADDDQEEVARLFEKYDL--LAVPVVDEDNRLIGIITIDDIID  250 (451)
T ss_pred             ----------CcHhHHHH--Hhccc-ceeecccCCHHHHHHHHHHhCC--eecceECCCCceeeeeeHHHHHH
Confidence                      11334444  68888 9999999999999999999999  99999999999999988777765

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.93  E-value=1.8e-05  Score=79.45  Aligned_cols=163  Identities=12%  Similarity=0.072  Sum_probs=114.4

Q ss_pred             HHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcc-------cCCCcccccC-Cchh
Q 015178           36 ALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEE-------NLLNPESALQ-DPVS  107 (412)
Q Consensus        36 ~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~-------~l~~~~~~l~-~~V~  107 (412)
                      .|.++.-+..|.+.++                         ..-||+.+.-.+++..+       |-++..++.. +.|+
T Consensus        54 ~ltr~itl~tPlvsSp-------------------------MDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK  108 (503)
T KOG2550|consen   54 KLTRNITLNTPLVSSP-------------------------MDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVK  108 (503)
T ss_pred             hhhhcccccCceeccC-------------------------CcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHH
Confidence            4556667777999864                         33488888888776421       1111111111 2232


Q ss_pred             hhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCC
Q 015178          108 VLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLS  186 (412)
Q Consensus       108 dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~  186 (412)
                      ..-...-+..+...|++++.++++... +|+..+||..+..             -+.+++|+||-+|+ .|+.++     
T Consensus       109 ~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~-------------~~~KLvG~vtsrdi-~f~~~~-----  169 (503)
T KOG2550|consen  109 NYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK-------------RGSKLVGIITSRDI-QFLEDN-----  169 (503)
T ss_pred             HhhcccccCCcccCCcccchhhhhhcccccccccccccCCc-------------ccceeEEEEehhhh-hhhhcc-----
Confidence            222111123678899999999999888 9999999875432             24689999999997 454321     


Q ss_pred             CCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178          187 PTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS  250 (412)
Q Consensus       187 ~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~  250 (412)
                         ...+.+  +|+++ .++.....++.++=+++.+++-  ..+||||++|.+|-+|+..||++
T Consensus       170 ---~~~~~~--vmt~~-~~~~~~gi~l~~~neiL~~~kk--Gkl~iv~~~gelva~~~rtDl~k  225 (503)
T KOG2550|consen  170 ---SLLVSD--VMTKN-PVTGAQGITLKEANEILKKIKK--GKLPVVDDKGELVAMLSRTDLMK  225 (503)
T ss_pred             ---cchhhh--hcccc-cccccccccHHHHHHHHHhhhc--CCcceeccCCceeeeeehhhhhh
Confidence               122333  68888 7889999999999999999977  99999999999999999999966

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=97.82  E-value=7.6e-05  Score=70.28  Aligned_cols=125  Identities=16%  Similarity=0.260  Sum_probs=98.8

Q ss_pred             CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC-cEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG-RLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g-~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      .+++..|-... .+++..+.++.+.+..|.+..-  |..||+.++. .+.|+                   |-++||+.|
T Consensus        68 ~vrDiMIPRSQ-M~~l~~~~~l~~~l~~iiesaH--SRfPVi~edkD~v~GI-------------------L~AKDLL~~  125 (293)
T COG4535          68 RVRDIMIPRSQ-MITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHVEGI-------------------LLAKDLLPF  125 (293)
T ss_pred             hHhhhcccHHH-heeccccCCHHHHHHHHHHhcc--ccCCcccCCchhhhhh-------------------hhHHHHHHH
Confidence            34543333345 9999999999999999999987  9999998764 89998                   889999987


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW  350 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~  350 (412)
                      +...  .+                                 +|             .        .++ +=+|.+.++++
T Consensus       126 ~~~~--~~---------------------------------~F-------------~--------i~~-lLRPav~VPES  148 (293)
T COG4535         126 MRSD--AE---------------------------------PF-------------D--------IKE-LLRPAVVVPES  148 (293)
T ss_pred             hcCC--cc---------------------------------cc-------------c--------HHH-hcccceecccc
Confidence            5311  00                                 00             0        011 12678889999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      -.+...+..+..++.|--.|||+-|-+-|.||..|||..+.-.++
T Consensus       149 Krvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE  193 (293)
T COG4535         149 KRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE  193 (293)
T ss_pred             hhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999986655

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.70  E-value=0.00049  Score=70.03  Aligned_cols=107  Identities=15%  Similarity=0.141  Sum_probs=86.6

Q ss_pred             eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCcc
Q 015178           20 LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPE   99 (412)
Q Consensus        20 lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~   99 (412)
                      .+.... +.+..+|++.|..+++.++.|+|.                      ++++.|.++..++..|+...       
T Consensus       252 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~g~~~~~~~~~~~~~~-------  301 (363)
T TIGR01186       252 PITKTA-DKGPRSALQLMRDERVDSLYVVDR----------------------QNKLVGVVDVESIKQARKKA-------  301 (363)
T ss_pred             ceeecC-CCCHHHHHHHHHhcCCceEEEEcC----------------------CCCEEEEEeHHHHHHHhhcC-------
Confidence            345566 778999999999999999999996                      46899999999998886531       


Q ss_pred             cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHH
Q 015178          100 SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF  178 (412)
Q Consensus       100 ~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l  178 (412)
                          ..+.+.+...   +.++.++++|.+++..|. .+.. +||+++                +++.+|+||..++++.+
T Consensus       302 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~----------------~~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       302 ----QGLQDVLIDD---IYTVDAGTLLRETVRKVLKAGIK-VPVVDE----------------DQRLVGIVTRGSLVDAL  357 (363)
T ss_pred             ----CchhhhhccC---CceECCCCcHHHHHHHHHhCCCC-EEEECC----------------CCcEEEEEEHHHHHHHH
Confidence                2355555433   678999999999999999 5655 999864                36789999999999998


Q ss_pred             HH
Q 015178          179 LN  180 (412)
Q Consensus       179 ~~  180 (412)
                      ..
T Consensus       358 ~~  359 (363)
T TIGR01186       358 YD  359 (363)
T ss_pred             Hh
Confidence            65

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.66  E-value=0.0005  Score=70.86  Aligned_cols=106  Identities=14%  Similarity=0.100  Sum_probs=84.8

Q ss_pred             EEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCcccc
Q 015178           22 SLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESA  101 (412)
Q Consensus        22 ~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~~~  101 (412)
                      .... +.+..+|++.|.+++..++.|+|.                      .+++.|+++..|+..+..+          
T Consensus       289 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~g~~~~~~~~~~~~~----------  335 (400)
T PRK10070        289 RKTP-GFGPRSALKLLQDEDREYGYVIER----------------------GNKFVGAVSIDSLKTALTQ----------  335 (400)
T ss_pred             ccCC-CCCHHHHHHHHHhcCCceEEEEcC----------------------CCcEEEEEeHHHHHhhhhc----------
Confidence            3446 678999999999999999999996                      3689999999999876542          


Q ss_pred             cCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178          102 LQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       102 l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~  180 (412)
                       ..++.+.+...   +.++.++++|.+++..|...-..+||+++                +++.+|+||..++++.+..
T Consensus       336 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        336 -QQGLDAALIDA---PLAVDAQTPLSELLSHVGQAPCAVPVVDE----------------DQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             -CCchhhhhccC---CceeCCCCCHHHHHHHHHhCCCcEEEECC----------------CCcEEEEEEHHHHHHHHHh
Confidence             12355555433   67999999999999999954455888863                4678999999999999865

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.63  E-value=0.00011  Score=61.72  Aligned_cols=55  Identities=15%  Similarity=0.133  Sum_probs=48.9

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      .+++|+|.  +++.+++. ++++.+|++.|.++++..+||+|.                      +++++|+|+..||..
T Consensus        58 ~~v~dim~--~~~~~v~~-~~~l~~a~~~~~~~~~~~lpVvd~----------------------~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVIN--RKPVTARP-NDPLREALNLMHEHNIRTLPVVDD----------------------DGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcC--CCCCEECC-cCcHHHHHHHHHHcCCCEEEEECC----------------------CCeEEEEEEHHHhhc
Confidence            67999995  56888999 999999999999999999999995                      368999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=97.60  E-value=0.00079  Score=67.47  Aligned_cols=136  Identities=18%  Similarity=0.264  Sum_probs=102.6

Q ss_pred             CCCcccccCCC-CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178          190 NQPINSLNIVD-DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDL  267 (412)
Q Consensus       190 ~~~i~~L~i~~-~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl  267 (412)
                      .-+++|  +|. ++++..+..+++..+.++.+...-.  +.+|+-.++ ..++|+                   +-.+|+
T Consensus       199 ~~tV~D--IMvpR~~i~~id~d~~~e~iv~ql~~s~H--tRiplyr~~~DnIiGv-------------------lh~r~l  255 (423)
T COG4536         199 NLTVSD--IMVPRNEIIGIDIDDPWEEIVRQLLHSPH--TRIPLYRDDLDNIIGV-------------------LHVRDL  255 (423)
T ss_pred             cceeee--eeccccceeeecCCCCHHHHHHHHhhCCC--CceeeecCChhHhhhh-------------------hhHHHH
Confidence            345665  455 3349999999999999999998877  999998764 379998                   788888


Q ss_pred             hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178          268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC  347 (412)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~  347 (412)
                      +++....+.   +                    +..                       .+.|         .-.+++.+
T Consensus       256 lr~l~e~~~---~--------------------~k~-----------------------d~~~---------~a~epyFV  280 (423)
T COG4536         256 LRLLNEKNE---F--------------------TKE-----------------------DILR---------AADEPYFV  280 (423)
T ss_pred             HHHhhccCc---c--------------------cHh-----------------------HHHH---------HhcCCeec
Confidence            875422110   0                    000                       0000         11468999


Q ss_pred             CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhccccCCC
Q 015178          348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENP  403 (412)
Q Consensus       348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~~~~~~~  403 (412)
                      +..+++..-+.+|.+++-|-=-|||+=|.+.|+||+.|||..+.-.+.++....++
T Consensus       281 Pe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~  336 (423)
T COG4536         281 PEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAK  336 (423)
T ss_pred             CCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccch
Confidence            99999999999999999999999999999999999999999998777655544443

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.59  E-value=0.00013  Score=76.99  Aligned_cols=150  Identities=17%  Similarity=0.197  Sum_probs=93.8

Q ss_pred             cCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-----CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178          197 NIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-----GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM  271 (412)
Q Consensus       197 ~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-----g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~  271 (412)
                      ++|+++ |++++.-+.+...++.++..+-  .|.||||+.     +++.|+|=                   .+.++...
T Consensus       586 ev~~~p-vi~l~~~ekV~~Iv~vLk~t~H--ngFPVvd~~~~~~~~~l~GlIL-------------------Rshl~vlL  643 (762)
T KOG0474|consen  586 EVMSKP-VICLNRVEKVAVIVDVLKSTNH--NGFPVVDEPPSNEAGRLHGLIL-------------------RSHLLVLL  643 (762)
T ss_pred             hhccCC-eEEEechhhHHHHHHHHHhcCc--CCCccccCCCCccchhhhHHHH-------------------HHHHHHHH
Confidence            468888 9999999999999999999876  999999973     47778742                   22222211


Q ss_pred             cCC------CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCce
Q 015178          272 DCG------RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAI  345 (412)
Q Consensus       272 ~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vv  345 (412)
                      ..+      ....++..  +.+.   ..+.    +.+.      ..     .-++....+.....+.+.  ..+|...++
T Consensus       644 ~~~~f~~~~~~~~~~~~--~~~~---~~~d----~a~r------~~-----~i~dv~lt~~e~~~yvDl--~p~~n~sPy  701 (762)
T KOG0474|consen  644 KKRVFVEESRSTFDLPV--RRKF---TFRD----FAKR------EP-----SIEDVHLTSEEMEMYVDL--HPFMNPSPY  701 (762)
T ss_pred             HhhhhhccCccccCcch--hhcC---CHHH----hhhc------CC-----chhhhhcchHhHhhcccc--ccccCCCCc
Confidence            000      00000000  0000   0000    0000      00     000000000011122222  257888999


Q ss_pred             EeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          346 LCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       346 t~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      |+.+++|+..+...+.+-+.+|+.||+..++.+||+|+.|+.+.-
T Consensus       702 tV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  702 TVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR  746 (762)
T ss_pred             ccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence            999999999999999999999999999999999999999998654

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.00018  Score=67.85  Aligned_cols=156  Identities=13%  Similarity=0.110  Sum_probs=113.9

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      ...|+|+|+....+++++. +.++.+-+..+++..=+.-||...+                     .+.+.||+-..|++
T Consensus        66 dl~vrDiMIPRSQM~~l~~-~~~l~~~l~~iiesaHSRfPVi~ed---------------------kD~v~GIL~AKDLL  123 (293)
T COG4535          66 DLRVRDIMIPRSQMITLKR-NQTLDECLDVIIESAHSRFPVISED---------------------KDHVEGILLAKDLL  123 (293)
T ss_pred             HhhHhhhcccHHHheeccc-cCCHHHHHHHHHHhccccCCcccCC---------------------chhhhhhhhHHHHH
Confidence            4579999998778999999 9999999999999999999999865                     46899999999999


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      .|+..+...        ..+.+++.    |.+.|++.-.|...++-|. +.-|=..|+++                =|.+
T Consensus       124 ~~~~~~~~~--------F~i~~lLR----Pav~VPESKrvd~lLkeFR~~RnHMAIViDE----------------fGgV  175 (293)
T COG4535         124 PFMRSDAEP--------FDIKELLR----PAVVVPESKRVDRLLKEFRSQRNHMAIVIDE----------------FGGV  175 (293)
T ss_pred             HHhcCCccc--------ccHHHhcc----cceecccchhHHHHHHHHHhhcCceEEEEec----------------cCCe
Confidence            998753221        22666664    3477888888888889999 66666666643                2456


Q ss_pred             eeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHH
Q 015178          166 YCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFA  216 (412)
Q Consensus       166 v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a  216 (412)
                      -|.||-+||+..+..-+ +++..--...|+.   ..+. -++|.+-+++.+-
T Consensus       176 sGLVTIEDiLEqIVGdIEDE~Deee~~dI~~---ls~~-~~~VrALT~IedF  223 (293)
T COG4535         176 SGLVTIEDILEQIVGDIEDEYDEEEDADIRQ---LSRH-TWRVRALTEIEDF  223 (293)
T ss_pred             eeeEEHHHHHHHHhcccccccchhhhhhhHh---hcCC-ceEEEecccHHHH
Confidence            68999999999886532 2232211222332   2334 6777777775443

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.00045  Score=72.96  Aligned_cols=139  Identities=19%  Similarity=0.154  Sum_probs=99.5

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      ..++.+++|+|.  +++++++. -+.|+.....|...+=.+-||+|....+                 ..+++.|++=..
T Consensus       578 ~mr~L~a~ev~~--~pvi~l~~-~ekV~~Iv~vLk~t~HngFPVvd~~~~~-----------------~~~~l~GlILRs  637 (762)
T KOG0474|consen  578 YMRNLTAGEVMS--KPVICLNR-VEKVAVIVDVLKSTNHNGFPVVDEPPSN-----------------EAGRLHGLILRS  637 (762)
T ss_pred             HhhhhhHhhhcc--CCeEEEec-hhhHHHHHHHHHhcCcCCCccccCCCCc-----------------cchhhhHHHHHH
Confidence            357889999995  58999999 9999999999999999999999964321                 126899999998


Q ss_pred             HHHHHhhhc----c---cCC-Ccc------c-cc-CCchhhhc--------c--CC--CCc-eEecCCCCcHHHHHHHHh
Q 015178           84 DIISFLCKE----E---NLL-NPE------S-AL-QDPVSVLL--------P--EA--SGV-IRHLEPSASLLEAVDLLL  134 (412)
Q Consensus        84 Dil~~l~~~----~---~l~-~~~------~-~l-~~~V~dvm--------~--~~--~~~-~~tV~~~~sL~~ai~lm~  134 (412)
                      -++..+.+.    +   +.. +..      . +- ..++.|+-        .  ..  .+| .++|.+++++..+..+|.
T Consensus       638 hl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR  717 (762)
T KOG0474|consen  638 HLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFR  717 (762)
T ss_pred             HHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHH
Confidence            888866531    0   000 000      0 00 01233331        0  01  122 889999999999999999


Q ss_pred             -cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHH
Q 015178          135 -GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF  178 (412)
Q Consensus       135 -~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l  178 (412)
                       -|+|++.|+...                ...+||+|+.|+.++=
T Consensus       718 ~lGLRhLlVv~~~----------------~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  718 QLGLRHLLVVPKT----------------NRVVGILTRKDLARYR  746 (762)
T ss_pred             HhcceeEEEecCC----------------CceeEEEehhhhhhHH
Confidence             899999887532                3458899999999874

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.28  E-value=0.0008  Score=45.57  Aligned_cols=47  Identities=28%  Similarity=0.305  Sum_probs=41.7

Q ss_pred             eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178           20 LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL   89 (412)
Q Consensus        20 lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l   89 (412)
                      .++++. ++++.++++.|.++++..+||+++                      +++++|+++..|++..+
T Consensus         2 ~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSP-DTTLEEALELLREHGIRRLPVVDE----------------------EGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecC-CCcHHHHHHHHHHhCCCcccEECC----------------------CCeEEEEEEHHHHHHhh
Confidence            467888 999999999999999999999995                      25799999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.88  E-value=0.0089  Score=63.51  Aligned_cols=133  Identities=17%  Similarity=0.219  Sum_probs=85.8

Q ss_pred             EEEEeCC-CcHHHHHHHHHhcCCCCceeEEEcCC--CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178          204 IFAIQYD-EPAAFAIPLIAQSHINQTSVALVDEE--GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL  280 (412)
Q Consensus       204 v~tv~~~-~~~~~a~~~m~~~~i~~s~vpVVd~~--g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~  280 (412)
                      ..+++.+ +++.+...+|.+...  ++.|||=++  .+++|++...||..         +..++++...+...       
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~--sgfpvvl~~~sq~lvGfv~rr~l~~---------~i~~ar~~q~~~~~-------  619 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDF--SGFPVVLSEDSQRLVGFVLRRNLFL---------AILNARKIQSFIVT-------  619 (696)
T ss_pred             heeccccceeHHHHHHHHhhccc--CCceEEEccccceeEEEEchHHHHH---------HHhhhcccccccee-------
Confidence            6666666 999999999999988  999997443  59999955444332         11222222221100       


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcccccccc-ccccccCccccccccCCceEeCCCCcHHHHHHH
Q 015178          281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSA-QSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQ  359 (412)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~  359 (412)
                                ++.     .+.+.       .|      +.. .+.. ++      --+++|.-.++|++-.++...++.+
T Consensus       620 ----------~~~-----~f~~~-------~~------~~~-~~~~~~~------~lk~il~~tp~tv~d~tp~~~v~~~  664 (696)
T KOG0475|consen  620 ----------TSI-----YFNDP-------SP------SAV-AGIPSRL------DLKDILDMTPFTVTDLTPMETVVDL  664 (696)
T ss_pred             ----------ccc-----ccCCC-------Cc------ccc-CCCCCCc------CceeeccCCcccccccCcHHHHHHH
Confidence                      000     01110       00      000 0000 11      1235777889999999999999999


Q ss_pred             HHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          360 ALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       360 m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      +.+-+++.+-| +.+|++.|+||..|+|+..
T Consensus       665 F~~lg~~~~~v-~~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  665 FRKLGLRQILV-TKNGILLGIITKKDCLRHT  694 (696)
T ss_pred             HHhhCceEEEE-ccCCeeEeeeehHHHHHhh
Confidence            99999999975 5669999999999999864

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.49  E-value=0.02  Score=60.97  Aligned_cols=126  Identities=16%  Similarity=0.179  Sum_probs=92.1

Q ss_pred             cccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhc
Q 015178           13 LCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKE   92 (412)
Q Consensus        13 l~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~   92 (412)
                      .+...+.++.++..+.|++|...+|.+...++-||+-+..                    .++++|+++.+|+..-+...
T Consensus       551 p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~--------------------sq~lvGfv~rr~l~~~i~~a  610 (696)
T KOG0475|consen  551 PCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED--------------------SQRLVGFVLRRNLFLAILNA  610 (696)
T ss_pred             hhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccc--------------------cceeEEEEchHHHHHHHhhh
Confidence            3344446999999569999999999999999999997542                    47999999999998766521


Q ss_pred             ccC----CCcccccC-------------CchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCC
Q 015178           93 ENL----LNPESALQ-------------DPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKP  154 (412)
Q Consensus        93 ~~l----~~~~~~l~-------------~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~  154 (412)
                      ...    ........             ...+++|...   +.+|.-.++...++.+|. -|++...|.           
T Consensus       611 r~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~t---p~tv~d~tp~~~v~~~F~~lg~~~~~v~-----------  676 (696)
T KOG0475|consen  611 RKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDMT---PFTVTDLTPMETVVDLFRKLGLRQILVT-----------  676 (696)
T ss_pred             ccccccceecccccCCCCccccCCCCCCcCceeeccCC---cccccccCcHHHHHHHHHhhCceEEEEc-----------
Confidence            110    00000111             1255555544   778888899988999999 799999885           


Q ss_pred             CCCcccCCCCeeeeecHHHHHHHH
Q 015178          155 SLKSTFHNDSEYCWLTQEDLIRYF  178 (412)
Q Consensus       155 ~~~~~~~~~~~v~iITq~DIv~~l  178 (412)
                            ++|++.|+||..|++++.
T Consensus       677 ------~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  677 ------KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             ------cCCeeEeeeehHHHHHhh
Confidence                  347788999999999874

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.28  E-value=0.091  Score=52.28  Aligned_cols=51  Identities=20%  Similarity=0.282  Sum_probs=42.2

Q ss_pred             cCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          341 RSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       341 ~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ..++.++.+++.+.+.+..+.+...+ ++|||++++++|+|++..++.++..
T Consensus       334 ~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         334 IDDVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             cccccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHhc
Confidence            35577788888888888877766654 6799999999999999999999864

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.82  E-value=0.046  Score=56.06  Aligned_cols=50  Identities=12%  Similarity=0.219  Sum_probs=43.2

Q ss_pred             cCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          341 RSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       341 ~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ..+..++++++++.+++..+.+.. +-++|+|+ |+++|+|++.++|.++..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       332 EAAPTVINPDTLMRDVLAARHRTG-GAILLVEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             cccCcccCCCCcHHHHHHHHhcCC-CCeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence            346789999999999999888766 44889986 999999999999998863

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=91.09  E-value=1.3  Score=44.33  Aligned_cols=156  Identities=18%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             CCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhc---c
Q 015178           17 KPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKE---E   93 (412)
Q Consensus        17 ~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~---~   93 (412)
                      ++-+|++++   -+.+|+++=     ..+-+..                       .|++|-+=|...|+..-+.+   +
T Consensus       215 ~KTIvFitH---DLdEAlriG-----~rIaimk-----------------------dG~ivQ~Gtp~eIl~~PAndYV~~  263 (386)
T COG4175         215 KKTIVFITH---DLDEALRIG-----DRIAIMK-----------------------DGEIVQVGTPEEILLNPANDYVRD  263 (386)
T ss_pred             CCeEEEEec---CHHHHHhcc-----ceEEEec-----------------------CCeEEEeCCHHHHHcCccHHHHHH
Confidence            356888888   788888741     2233333                       47888888888887743321   0


Q ss_pred             cCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHH
Q 015178           94 NLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQE  172 (412)
Q Consensus        94 ~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~  172 (412)
                      -..+....---+..++|.. ..+...-.+...-..++..+. .+...+.+..                ..++.+|+++..
T Consensus       264 Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~----------------~~~~~~g~v~~~  326 (386)
T COG4175         264 FVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD----------------RGNKFVGVVSID  326 (386)
T ss_pred             HHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh----------------ccCceeeEEecc
Confidence            0000011111236666652 122222222233334455554 2322322221                224466777777


Q ss_pred             HHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeec
Q 015178          173 DLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDIS  244 (412)
Q Consensus       173 DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS  244 (412)
                      ++++.                    .+... +.++.+++++.+.+..+.+..   ..+||||++|+++|+|+
T Consensus       327 ~~~~~--------------------~~~~~-~~~v~~d~~~~~~~~~~~~~~---~p~aVvde~~r~vG~i~  374 (386)
T COG4175         327 SLVKA--------------------ALIDD-VLTVDADTPLSEILARIRQAP---CPVAVVDEDGRYVGIIS  374 (386)
T ss_pred             chhcc--------------------ccccc-ccccCccchHHHHHHHHhcCC---CceeEEcCCCcEEEEec
Confidence            76543                    13344 788999999988888887775   47899999999999954

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=89.62  E-value=0.54  Score=45.66  Aligned_cols=38  Identities=32%  Similarity=0.249  Sum_probs=33.5

Q ss_pred             cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178          352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRV  389 (412)
Q Consensus       352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~  389 (412)
                      ...+++..++..+..-+||||++|+++|+||+.|++..
T Consensus       271 ~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         271 VDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             hhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            34448888999999999999999999999999999864

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=80.17  E-value=2.3  Score=46.75  Aligned_cols=57  Identities=9%  Similarity=0.025  Sum_probs=51.1

Q ss_pred             ccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCC--cEEEEEehHHHHHHHHH
Q 015178          336 ARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDC--TLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       336 a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~--~lvGIVT~~DIL~~l~~  392 (412)
                      +.++|-+++..++.++|..|.-+.+..+.++-+|+||+..  -|+|.|.++.+.+.+-.
T Consensus       590 VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  590 VEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             eeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            6789999999999999999998888877799999999754  79999999999988865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-08
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-05
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-07
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-04
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-04

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 36/217 (16%), Positives = 77/217 (35%), Gaps = 26/217 (11%)

Query: 70  DSAACRCIGKVCMVDIISFLCKEENLLNPESA------LQDPVSVLLPEASGVIRHLEPS 123
           DS     +G + + D I+ L +       +        ++    V L ++   +  + P+
Sbjct: 75  DSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPN 134

Query: 124 ASLLEAVDLLLG-GVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCI 182
           ASL +AV  L+   +  L +  P                       LT + ++++    I
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVIDPESGNT---------------LYILTHKRILKFLKLFI 179

Query: 183 GLLSPTP--NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLV 240
                    ++ +  L I   A I  ++   P   A+ +  Q  +  +++ +VDE+GR+V
Sbjct: 180 TEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRV--SALPVVDEKGRVV 237

Query: 241 GDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277
              S F   +         + +S    + +       
Sbjct: 238 DIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEG 274

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 43/304 (14%), Positives = 96/304 (31%), Gaps = 38/304 (12%)

Query: 106 VSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDS 164
              L+P +S ++   + S  + +A   L+  GV+   +                      
Sbjct: 37  CYDLIPTSSKLV-VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSF-------------- 81

Query: 165 EYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFA---------IQYDEPAAF 215
               LT  D I   L+     +      +    I     ++          I  +     
Sbjct: 82  -VGMLTITDFIN-ILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFD 139

Query: 216 AIPLIAQSHINQTSVALVD-EEGRLVG-----DISPFSFNSCDETVAAAMVTLSAGDLMA 269
           A+  + ++ I+   + ++D E G  +       I  F      E      ++ S  +L  
Sbjct: 140 AVSSLIRNKIH--RLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQI 197

Query: 270 YMDCGR---PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSA 326
                         V +      +  +     + E    +   S  D  +   E +  + 
Sbjct: 198 GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL 257

Query: 327 QSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGM 386
               ++    R  +    + C+   +L A+I + +   V  + VV+E   + GIV+ + +
Sbjct: 258 DVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI 317

Query: 387 LRVI 390
           L+ +
Sbjct: 318 LQAL 321

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 34/207 (16%), Positives = 65/207 (31%), Gaps = 31/207 (14%)

Query: 70  DSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIR-------HLEP 122
           DS   R  G +   D I+ +    +  +    +       L +    +         + P
Sbjct: 70  DSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHP 129

Query: 123 SASLLEAVDLLLG-GVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNC 181
           S  L EA   +L      + +        +                 LTQ  ++++    
Sbjct: 130 SRPLFEACLKMLESRSGRIPLIDQDEETHREIV-----------VSVLTQYRILKFVALN 178

Query: 182 IGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVG 241
                     PI  LNI+    + + Q   P    I ++ Q  +  +SV ++DE G L+ 
Sbjct: 179 CRETHFL-KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV--SSVPIIDENGYLIN 235

Query: 242 DISPF---------SFNSCDETVAAAM 259
               +          +N    +V  A+
Sbjct: 236 VYEAYDVLGLIKGGIYNDLSLSVGEAL 262

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 23/209 (11%)

Query: 70  DSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHL--------- 120
           DS A +  G + M D ++ +       +   A+ +     L     V R +         
Sbjct: 62  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 121

Query: 121 -EPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL 179
             P  SL++A   +        IPL           + S          LTQ  ++++  
Sbjct: 122 VHPMHSLMDACLAMSKSRA-RRIPLIDVDGETGSEMIVSV---------LTQYRILKFIS 171

Query: 180 NCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRL 239
                 +     P+N + I   + +     +      I ++A+ +I+  +V +V+ EG L
Sbjct: 172 MNCKETAML-RVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNIS--AVPIVNSEGTL 228

Query: 240 VGDISPFSFNSCDETVAAAMVTLSAGDLM 268
           +            +    + + LS G+ +
Sbjct: 229 LNVYESVDVMHLIQDGDYSNLDLSVGEAL 257

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 33/247 (13%), Positives = 72/247 (29%), Gaps = 44/247 (17%)

Query: 169 LTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDD-------AGIFAIQYDEPAAFAIPLIA 221
           +T  D++ +                N L  +++         +  ++ +     AI    
Sbjct: 52  ITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFL 111

Query: 222 QSHINQTSVALVDEEGRLVGDIS-------PFSFNSCDETVAAAMVT-----------LS 263
             ++      +V++E +L+  I+              +E +   +               
Sbjct: 112 TKNVG--GAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKD 169

Query: 264 AGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESST 323
               M      R P      V   + E  +VG +     D  I       + +     + 
Sbjct: 170 VARTMVRNGFRRLP------V---VSEGRLVGIIT--STDF-IKLLGSDWAFNHMQTGNV 217

Query: 324 GSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTF 383
               +VR      R V     I       L  +    +   +  + VV+E+  + GI+T 
Sbjct: 218 REITNVRMEEIMKRDV-----ITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITE 272

Query: 384 TGMLRVI 390
             +L+  
Sbjct: 273 KDVLKYF 279

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 35/201 (17%), Positives = 59/201 (29%), Gaps = 68/201 (33%)

Query: 190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFN 249
             PI  LNI+    + + Q   P    I ++ Q  +  +SV ++DE G L+         
Sbjct: 7   KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV--SSVPIIDENGYLINVY------ 58

Query: 250 SCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSG 309
                         A D++  +  G    DL   V + L                     
Sbjct: 59  -------------EAYDVLGLIK-GGIYNDLSLSVGEAL--------------------- 83

Query: 310 SCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVW 369
                                      R         C     L  ++      RV   +
Sbjct: 84  -------------------------MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFF 118

Query: 370 VVEEDCTLVGIVTFTGMLRVI 390
           VV++   LVG++T + +L+ I
Sbjct: 119 VVDDVGRLVGVLTLSDILKYI 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	99.9
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.9
4esy_A	170	CBS domain containing membrane protein; structural	99.86
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.86
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.85
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.84
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.8
4esy_A	170	CBS domain containing membrane protein; structural	99.77
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.77
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.76
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.76
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.76
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.76
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.76
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.75
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.75
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.75
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.75
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.75
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.74
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.74
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.73
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.73
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.73
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.73
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.72
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.72
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.72
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.72
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.72
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.71
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.71
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.71
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.71
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.7
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.7
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.7
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.7
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.7
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.7
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.69
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.69
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.69
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.68
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.68
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.68
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.67
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.67
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.67
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.67
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.66
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.66
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.66
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.65
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.65
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.65
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.64
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.64
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.64
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.64
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.63
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.63
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.63
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.63
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.63
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.62
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.61
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.61
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.61
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.61
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.61
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.6
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.6
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.6
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.6
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.6
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.6
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.6
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.59
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.59
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.59
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.58
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.58
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.58
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.57
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.56
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.56
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.56
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.55
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.54
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.51
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.51
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.49
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.49
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.49
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.42
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.39
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.38
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.38
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.37
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.35
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.35
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.33
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.32
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.3
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.21
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.21
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.19
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.18
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.16
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.15
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.1
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.99
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.97
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.94
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.91
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.87
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.8
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.79
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.67
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.67

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=3.7e-37  Score=301.59  Aligned_cols=281  Identities=20%  Similarity=0.229  Sum_probs=215.9

Q ss_pred             ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178            3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM   82 (412)
Q Consensus         3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~   82 (412)
                      .||..++|+|+|..+.++++++. ++|+.+|+++|.+++++++||||++                     .++++|++|.
T Consensus        25 ~~l~~~~~~d~m~~~~~~v~v~~-~~sv~~a~~~m~~~~~~~~pV~d~~---------------------~~~lvGilt~   82 (323)
T 3t4n_C           25 KFLNSKTSYDVLPVSYRLIVLDT-SLLVKKSLNVLLQNSIVSAPLWDSK---------------------TSRFAGLLTT   82 (323)
T ss_dssp             HHHHHSBHHHHSCSEEEEEEEET-TSBHHHHHHHHHHTTCSCEEEEETT---------------------TTEEEEEECH
T ss_pred             HHHHhCchHhhCCCCCcEEEEcC-CCcHHHHHHHHHHcCCceEEEEeCC---------------------CCeEEEEEEH
Confidence            57899999999998889999999 9999999999999999999999964                     3589999999


Q ss_pred             HHHHHHhhhc----ccCCCcccccCCchhhhccCC---CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCC
Q 015178           83 VDIISFLCKE----ENLLNPESALQDPVSVLLPEA---SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKP  154 (412)
Q Consensus        83 ~Dil~~l~~~----~~l~~~~~~l~~~V~dvm~~~---~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~  154 (412)
                      .|++.++...    ............+++++|...   ..+++++.+++++.+|++.|. ++++++||+++....     
T Consensus        83 ~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~-----  157 (323)
T 3t4n_C           83 TDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET-----  157 (323)
T ss_dssp             HHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT-----
T ss_pred             HHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC-----
Confidence            9999977531    111001111123455555211   134889999999999999999 899999998643110     


Q ss_pred             CCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccC-CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEE
Q 015178          155 SLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNI-VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALV  233 (412)
Q Consensus       155 ~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i-~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV  233 (412)
                            ....++|+||+.|+++++..+... ......+++++++ |+++ ++++.+++++.+|++.|.++++  +++||+
T Consensus       158 ------~~~~l~Givt~~di~~~l~~~~~~-~~~~~~~v~~~~~~m~~~-~~~v~~~~~~~~~~~~m~~~~~--~~~pVv  227 (323)
T 3t4n_C          158 ------HREIVVSVLTQYRILKFVALNCRE-THFLKIPIGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRV--SSVPII  227 (323)
T ss_dssp             ------CCEEEEEEEEHHHHHHHHHHHCGG-GGGCCSBGGGTTCSBCTT-CCCBCTTSBHHHHHHHHHHHTC--SEEEEE
T ss_pred             ------CccceEEEecHHHHHHHHHhcCCc-hhhhhCcHHHcCCCCCCC-cEEECCCCcHHHHHHHHHHcCC--CEEEEE
Confidence                  011389999999999999865432 2334567887654 4466 9999999999999999999999  999999


Q ss_pred             cCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCC
Q 015178          234 DEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPD  313 (412)
Q Consensus       234 d~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  313 (412)
                      |++|+++|+|                   |.+|++.++..+                  ..   ...             
T Consensus       228 d~~~~~~Gii-------------------t~~dl~~~~~~~------------------~~---~~~-------------  254 (323)
T 3t4n_C          228 DENGYLINVY-------------------EAYDVLGLIKGG------------------IY---NDL-------------  254 (323)
T ss_dssp             CTTCBEEEEE-------------------ETTHHHHHHHTT------------------HH---HHT-------------
T ss_pred             CCCCeEEEEE-------------------eHHHHHHHHhhc------------------hh---hhc-------------
Confidence            9999999994                   566665543210                  00   000             


Q ss_pred             CCCCCccccccccccccccCccccccccC------CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHH
Q 015178          314 SSSSDDESSTGSAQSVRSRGYSARVVHRS------EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGML  387 (412)
Q Consensus       314 ~~~~~~e~~~~~~~~~~~~~~~a~~~m~~------~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL  387 (412)
                                         ..++.++|+.      ++++|++++++.+++++|.++++|++||||++|+++||||++||+
T Consensus       255 -------------------~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil  315 (323)
T 3t4n_C          255 -------------------SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL  315 (323)
T ss_dssp             -------------------TSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHH
T ss_pred             -------------------cCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHH
Confidence                               0112344554      799999999999999999999999999999889999999999999


Q ss_pred             HHHHH
Q 015178          388 RVIRD  392 (412)
Q Consensus       388 ~~l~~  392 (412)
                      +++..
T Consensus       316 ~~l~~  320 (323)
T 3t4n_C          316 KYILL  320 (323)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99975

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=9.4e-35  Score=285.80  Aligned_cols=296  Identities=17%  Similarity=0.154  Sum_probs=216.4

Q ss_pred             ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178            3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM   82 (412)
Q Consensus         3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~   82 (412)
                      .||.+++|+|+|..+.++++++. ++|+.+|+++|.+++++++||++.+                     .++++|+|+.
T Consensus        17 ~~l~~~~v~dim~~~~~vv~v~~-~~tv~~a~~~~~~~~~~~~pV~d~~---------------------~~~~vGiv~~   74 (334)
T 2qrd_G           17 AFIRSRTSYDVLPTSFRLIVFDV-TLFVKTSLSLLTLNNIVSAPLWDSE---------------------ANKFAGLLTM   74 (334)
T ss_dssp             HHHHHSBGGGGSCSEEEEEEEET-TSBHHHHHHHHHHHTCSCEEEEETT---------------------TTEEEEEECH
T ss_pred             HHHhcCchhhhCCCCCCEEEEcC-CCCHHHHHHHHHHcCCeEEEEEeCC---------------------CCeEEEEEEH
Confidence            46778999999987778999999 9999999999999999999999953                     2689999999


Q ss_pred             HHHHHHhhhc-c---cCCCcccccCCchhh-------hccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCC
Q 015178           83 VDIISFLCKE-E---NLLNPESALQDPVSV-------LLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKL  150 (412)
Q Consensus        83 ~Dil~~l~~~-~---~l~~~~~~l~~~V~d-------vm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~  150 (412)
                      .||+.++... +   +..........+++.       +|... ..++++.+++++.+|++.|. ++++++||+++.... 
T Consensus        75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~-~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~-  152 (334)
T 2qrd_G           75 ADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIP-PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET-  152 (334)
T ss_dssp             HHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSC-SSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT-
T ss_pred             HHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCC-CceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc-
Confidence            9999877531 0   000000111333333       35432 11389999999999999999 899999998642100 


Q ss_pred             CCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCccccc-CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCce
Q 015178          151 QPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLN-IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTS  229 (412)
Q Consensus       151 ~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~-i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~  229 (412)
                                +...++|+||+.||++++..+.... .....++++++ +|+++ ++++.+++++.+|++.|.++++  ++
T Consensus       153 ----------~~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~v~~l~~~m~~~-~~~v~~~~~~~~~~~~m~~~~~--~~  218 (334)
T 2qrd_G          153 ----------GSEMIVSVLTQYRILKFISMNCKET-AMLRVPLNQMTIGTWSN-LATASMETKVYDVIKMLAEKNI--SA  218 (334)
T ss_dssp             ----------TEEEEEEEEEHHHHHHHHHHHCGGG-GGCCCBGGGSSCSBCSS-CCCBCTTSBHHHHHHHHHHHTC--SE
T ss_pred             ----------CccceEEEeeHHHHHHHHHhhccch-hhhhCcHHHhCCcccCC-ceEECCCCcHHHHHHHHHHcCC--cE
Confidence                      0112899999999999987643221 12345677754 47777 9999999999999999999999  99


Q ss_pred             eEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCC
Q 015178          230 VALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSG  309 (412)
Q Consensus       230 vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  309 (412)
                      +||+|++|+++|+                   +|..|++.++..+. ..        .+                     
T Consensus       219 ~~Vvd~~~~~~Gi-------------------it~~dl~~~~~~~~-~~--------~~---------------------  249 (334)
T 2qrd_G          219 VPIVNSEGTLLNV-------------------YESVDVMHLIQDGD-YS--------NL---------------------  249 (334)
T ss_dssp             EEEECTTCBEEEE-------------------EETHHHHHHHTTSC-GG--------GG---------------------
T ss_pred             EEEEcCCCcEEEE-------------------EEHHHHHHHhhccc-cc--------cc---------------------
Confidence            9999998999999                   55667665432100 00        00                     


Q ss_pred             CCCCCCCCCccccccccccccccCcccccccc------CCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEeh
Q 015178          310 SCPDSSSSDDESSTGSAQSVRSRGYSARVVHR------SEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTF  383 (412)
Q Consensus       310 ~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~------~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~  383 (412)
                                             ..++.++|+      .++++|++++++.+++++|.+++++++||||++|+++||||+
T Consensus       250 -----------------------~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~  306 (334)
T 2qrd_G          250 -----------------------DLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSL  306 (334)
T ss_dssp             -----------------------GSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEH
T ss_pred             -----------------------cCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeH
Confidence                                   011234455      489999999999999999999999999999988999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCccccc
Q 015178          384 TGMLRVIRDRLRSMAKAENPNFCPVWI  410 (412)
Q Consensus       384 ~DIL~~l~~~~~~~~~~~~~~~~~~~~  410 (412)
                      +||++++.......  ...|.++..|-
T Consensus       307 ~dil~~~~~~~~~~--~~~~~~~~~~~  331 (334)
T 2qrd_G          307 ADILNYIIYDKTTT--PGVPEQTDNFE  331 (334)
T ss_dssp             HHHHHHHHSCCC-----------CCCC
T ss_pred             HHHHHHHHhccccC--CCCCccccchh
Confidence            99999998755432  22255555543

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=1.9e-34  Score=275.15  Aligned_cols=268  Identities=18%  Similarity=0.278  Sum_probs=209.9

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      +++++++. +++++++++ ++|+.+|+++|.+++++++||+|++                     .++++||+|..||+.
T Consensus         3 ~~v~~~i~-~~~~~~v~~-~~sl~~a~~~m~~~~~~~lpV~d~~---------------------~~~~~Givt~~di~~   59 (280)
T 3kh5_A            3 VRVMKIAQ-NKKIVTVYP-TTTIRKALMTMNENKYRRLPVVNAG---------------------NNKVVGIITSMDIVD   59 (280)
T ss_dssp             CBGGGTSC-CSCCCCBCT-TSBHHHHHHHHHHHCCCEEEEECTT---------------------TCBEEEEEEHHHHHH
T ss_pred             hhHHHHhc-CCCcEEECC-CCcHHHHHHHHHhCCCcEeeEEECC---------------------CCeEEEEEEHHHHHH
Confidence            35666654 458999999 9999999999999999999999952                     368999999999999


Q ss_pred             Hhhhcc--------cCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCc
Q 015178           88 FLCKEE--------NLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKS  158 (412)
Q Consensus        88 ~l~~~~--------~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~  158 (412)
                      ++....        ...+....++.+++++|...   ++++++++++.+|++.|. ++++++||+++             
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-------------  123 (280)
T 3kh5_A           60 FMGGGSKYNLIREKHERNFLAAINEPVREIMEEN---VITLKENADIDEAIETFLTKNVGGAPIVND-------------  123 (280)
T ss_dssp             HTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBCS---CCCEETTCBHHHHHHHHHHTTCSEEEEECT-------------
T ss_pred             HhcccchhhhhhhccccchhHHhhhhHHHhcCCC---CEEECCCCCHHHHHHHHHhCCCCEEEEEcC-------------
Confidence            885321        11111233467899999855   889999999999999999 89999999863             


Q ss_pred             ccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCc
Q 015178          159 TFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGR  238 (412)
Q Consensus       159 ~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~  238 (412)
                         +++.+|++|+.|+++++.....     ...++++  +|+++ ++++.+++++.+|++.|.++++  +.+||+ ++|+
T Consensus       124 ---~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~--~m~~~-~~~v~~~~~l~~~~~~~~~~~~--~~~~Vv-~~~~  189 (280)
T 3kh5_A          124 ---ENQLISLITERDVIRALLDKID-----ENEVIDD--YITRD-VIVATPGERLKDVARTMVRNGF--RRLPVV-SEGR  189 (280)
T ss_dssp             ---TCBEEEEEEHHHHHHHHGGGSC-----TTCBSGG--GCBCS-CCCBCTTCBHHHHHHHHHHHTC--SEEEEE-ETTE
T ss_pred             ---CCEEEEEEEHHHHHHHHhhcCC-----CCCCHHH--HhCCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEE-ECCE
Confidence               3678999999999998865321     1235554  67788 9999999999999999999999  999999 5789


Q ss_pred             EeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCC
Q 015178          239 LVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSD  318 (412)
Q Consensus       239 lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (412)
                      ++|+                   +|.+|++.++..+            +    ....    +...             . 
T Consensus       190 ~~Gi-------------------vt~~dl~~~~~~~------------~----~~~~----~~~~-------------~-  216 (280)
T 3kh5_A          190 LVGI-------------------ITSTDFIKLLGSD------------W----AFNH----MQTG-------------N-  216 (280)
T ss_dssp             EEEE-------------------EEHHHHHHHHTSH------------H----HHHH----HHSC-------------C-
T ss_pred             EEEE-------------------EEHHHHHHHHhhh------------h----hhhh----hccc-------------c-
Confidence            9999                   5677777654210            0    0000    0000             0 


Q ss_pred             ccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          319 DESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       319 ~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                               .......++.++|++++++|++++++.+++++|.+++++++||||++|+++|+||++||++++
T Consensus       217 ---------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          217 ---------VREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             ---------THHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred             ---------hhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence                     000011235678999999999999999999999999999999999999999999999999875

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=1.7e-34  Score=283.70  Aligned_cols=282  Identities=20%  Similarity=0.262  Sum_probs=216.5

Q ss_pred             cccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178            2 AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC   81 (412)
Q Consensus         2 ~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt   81 (412)
                      ..||..++|+|+|..++++++++. ++|+.+|+++|.+++++++||++.+                     .++++|+|+
T Consensus        29 ~~~l~~~~v~dim~p~~~v~~v~~-~~~v~~a~~~~~~~~~~~~pV~d~~---------------------~~~~vGivt   86 (330)
T 2v8q_E           29 TTFMKSHRCYDLIPTSSKLVVFDT-SLQVKKAFFALVTNGVRAAPLWDSK---------------------KQSFVGMLT   86 (330)
T ss_dssp             HHHHHHSBGGGGSCSEEEEEEEET-TSBHHHHHHHHHHHTCSEEEEEETT---------------------TTEEEEEEE
T ss_pred             HHHHHcCcHhhhccCCCcEEEEeC-CCcHHHHHHHHHHcCCcEEEEEeCC---------------------CCeEEEEEE
Confidence            457889999999976678999999 9999999999999999999999963                     258999999


Q ss_pred             hHHHHHHhhhcc-c----CCCcc----cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCC
Q 015178           82 MVDIISFLCKEE-N----LLNPE----SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQ  151 (412)
Q Consensus        82 ~~Dil~~l~~~~-~----l~~~~----~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~  151 (412)
                      ..|++.++.... .    .....    ..+..+++++|...   ++++.+++++.+|++.|. ++++++||+++      
T Consensus        87 ~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~---~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------  157 (330)
T 2v8q_E           87 ITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKP---LVCISPNASLFDAVSSLIRNKIHRLPVIDP------  157 (330)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCC---CCCBCTTSBHHHHHHHHHHHTCSCEEEECT------
T ss_pred             HHHHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCC---ceEeCCCCCHHHHHHHHHHCCCCeEEEEeC------
Confidence            999998775311 0    00000    01112345667644   899999999999999999 89999999863      


Q ss_pred             CCCCCCcccCCCCeeeeecHHHHHHHHHHccCc--CCCCCCCCcccccCCC-CCcEEEEeCCCcHHHHHHHHHhcCCCCc
Q 015178          152 PKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGL--LSPTPNQPINSLNIVD-DAGIFAIQYDEPAAFAIPLIAQSHINQT  228 (412)
Q Consensus       152 ~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~--l~~l~~~~i~~L~i~~-~~~v~tv~~~~~~~~a~~~m~~~~i~~s  228 (412)
                               ++++++|+||+.|+++++..+...  ...+...+++++.+|+ ++ ++++.+++++.+|++.|.++++  +
T Consensus       158 ---------~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~-~~~v~~~~~l~~~~~~m~~~~~--~  225 (330)
T 2v8q_E          158 ---------ESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN-IAMVRTTTPVYVALGIFVQHRV--S  225 (330)
T ss_dssp             ---------TTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSS-CCCEETTCBHHHHHHHHHHHCC--S
T ss_pred             ---------CCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcCC-ceEECCCCCHHHHHHHHHHcCC--C
Confidence                     136789999999999998765322  2233456777777777 67 9999999999999999999999  9


Q ss_pred             eeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccC
Q 015178          229 SVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISS  308 (412)
Q Consensus       229 ~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  308 (412)
                      .+||+|++|+++|+||                   .+|++.+...+. ...+         ...+..+   +.       
T Consensus       226 ~~~Vvd~~~~l~Giit-------------------~~dl~~~~~~~~-~~~~---------~~~v~~~---~~-------  266 (330)
T 2v8q_E          226 ALPVVDEKGRVVDIYS-------------------KFDVINLAAEKT-YNNL---------DVSVTKA---LQ-------  266 (330)
T ss_dssp             EEEEECTTSBEEEEEE-------------------GGGTGGGGGSSC-CCCC---------SSBHHHH---GG-------
T ss_pred             eEEEECCCCcEEEEEE-------------------HHHHHHHHhccc-cccc---------cCcHHHH---Hh-------
Confidence            9999998899999955                   444444321100 0000         0001111   10       


Q ss_pred             CCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          309 GSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       309 ~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                                                 ....|++++++|++++++.+++++|.+++++++||||++|+++||||++||++
T Consensus       267 ---------------------------~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~  319 (330)
T 2v8q_E          267 ---------------------------HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQ  319 (330)
T ss_dssp             ---------------------------GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred             ---------------------------ccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHH
Confidence                                       01134688999999999999999999999999999999899999999999999


Q ss_pred             HHHH
Q 015178          389 VIRD  392 (412)
Q Consensus       389 ~l~~  392 (412)
                      ++.+
T Consensus       320 ~~~~  323 (330)
T 2v8q_E          320 ALVL  323 (330)
T ss_dssp             HHHS
T ss_pred             HHHh
Confidence            8875

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=1.7e-34  Score=279.28  Aligned_cols=266  Identities=13%  Similarity=0.176  Sum_probs=214.6

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI   85 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di   85 (412)
                      ...+|+|+|.  ++++++++ ++|+.+|++.|.+++++++||+|  +                      +++||+|..||
T Consensus        18 ~~~~V~dim~--~~~~~v~~-~~~v~~a~~~m~~~~~~~~~V~d--~----------------------~l~GivT~~Di   70 (296)
T 3ddj_A           18 QGMNIETLMI--KNPPILSK-EDRLGSAFKKINEGGIGRIIVAN--E----------------------KIEGLLTTRDL   70 (296)
T ss_dssp             CCSSGGGTCE--ESCCEECT-TSBHHHHHHHTTGGGCCEEEEES--S----------------------SEEEEEEHHHH
T ss_pred             cccCHHHhcc--CCCcEECC-CccHHHHHHHHHHCCCceEEEEC--C----------------------eEEEEEeHHHH
Confidence            4678999996  57999999 99999999999999999999999  2                      69999999999


Q ss_pred             HHHhhhcccCCC----cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178           86 ISFLCKEENLLN----PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF  160 (412)
Q Consensus        86 l~~l~~~~~l~~----~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~  160 (412)
                      +.++........    .......+++++|...   ++++.+++++.+|++.|. ++++++||+++               
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---------------  132 (296)
T 3ddj_A           71 LSTVESYCKDSCSQGDLYHISTTPIIDYMTPN---PVTVYNTSDEFTAINIMVTRNFGSLPVVDI---------------  132 (296)
T ss_dssp             HGGGTTCC---CCHHHHHHHHTSBGGGTSEES---CCCEETTSCHHHHHHHHHHHTCSEEEEECT---------------
T ss_pred             HHHhcccccccccchhhHHHhcccHHHhccCC---CEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---------------
Confidence            998864221101    1123467899999855   889999999999999999 89999999853               


Q ss_pred             CCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEe
Q 015178          161 HNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLV  240 (412)
Q Consensus       161 ~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lv  240 (412)
                       +++++|+||..|+++++...      ....++++  +|+++ ++++.+++++.+|++.|.++++  +.+||+|++|+++
T Consensus       133 -~~~lvGivt~~dl~~~~~~~------~~~~~v~~--~m~~~-~~~v~~~~~l~~~~~~m~~~~~--~~~~Vvd~~~~~~  200 (296)
T 3ddj_A          133 -NDKPVGIVTEREFLLLYKDL------DEIFPVKV--FMSTK-VQTIYKEVRLDQAVKLMLRRGF--RRLPVIDDDNKVV  200 (296)
T ss_dssp             -TSCEEEEEEHHHHGGGGGGS------CCCCBHHH--HSBCS-CCCEETTSBHHHHHHHHHHHTC--SEEEEECTTSCEE
T ss_pred             -CCcEEEEEeHHHHHHhhhcc------cccccHHH--hhcCC-CeEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCEEE
Confidence             36789999999999876431      11345665  57788 9999999999999999999999  9999999999999


Q ss_pred             eeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcc
Q 015178          241 GDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDE  320 (412)
Q Consensus       241 G~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  320 (412)
                      |+                   +|..|++.++..                  .+..+    ...                 
T Consensus       201 Gi-------------------vt~~dl~~~~~~------------------~~~~~----~~~-----------------  222 (296)
T 3ddj_A          201 GI-------------------VTVVNAIKQLAK------------------AVDKL----DPD-----------------  222 (296)
T ss_dssp             EE-------------------EEHHHHHHHHHH------------------HHHHT----CTH-----------------
T ss_pred             EE-------------------EEHHHHHHHHHH------------------HHhhc----Chh-----------------
Confidence            99                   667777664310                  00000    000                 


Q ss_pred             ccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          321 SSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       321 ~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                               .....++.++|++++++|++++++.+++++|.+++++++||||++|+++||||++||++++.+...
T Consensus       223 ---------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~  288 (296)
T 3ddj_A          223 ---------YFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV  288 (296)
T ss_dssp             ---------HHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH
T ss_pred             ---------hhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhc
Confidence                     000123467888999999999999999999999999999999988999999999999999987654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=3.7e-33  Score=267.13  Aligned_cols=277  Identities=16%  Similarity=0.209  Sum_probs=187.1

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      |+++++|.  ++++++++ ++|+.+|++.|.++++.++||+|+                      +++++|+++..||+.
T Consensus         1 m~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~pV~d~----------------------~~~~~Giv~~~dl~~   55 (282)
T 2yzq_A            1 MRVKTIMT--QNPVTITL-PATRNYALELFKKYKVRSFPVVNK----------------------EGKLVGIISVKRILV   55 (282)
T ss_dssp             CBHHHHSE--ESCCCEES-SCC------------CCEEEEECT----------------------TCCEEEEEESSCC--
T ss_pred             CchHHhcc--CCCeEECC-CCcHHHHHHHHHHcCCCeEEEEcC----------------------CCcEEEEEEHHHHHh
Confidence            57899996  67899999 999999999999999999999995                      368999999999986


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      .+.            +.+++++|...   ++++++++++.+|++.|. ++++++||+++                +++.+
T Consensus        56 ~~~------------~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~----------------~~~~~  104 (282)
T 2yzq_A           56 NPD------------EEQLAMLVKRD---VPVVKENDTLKKAAKLMLEYDYRRVVVVDS----------------KGKPV  104 (282)
T ss_dssp             --------------------CCCBSC---CCEEETTSBHHHHHHHHHHHTCSEEEEECT----------------TSCEE
T ss_pred             hhc------------cCCHHHHcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCEEE
Confidence            542            35688999754   789999999999999999 89999999863                25789


Q ss_pred             eeecHHHHHH-HHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecC
Q 015178          167 CWLTQEDLIR-YFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISP  245 (412)
Q Consensus       167 ~iITq~DIv~-~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~  245 (412)
                      |+||+.|+++ ++.+. .   .....++++  +|+++ ++++.+++++.+|++.|.++++  +++||+|++|+++|+||.
T Consensus       105 Giit~~di~~~~~~~~-~---~~~~~~v~~--~m~~~-~~~v~~~~~l~~~~~~~~~~~~--~~l~Vvd~~~~~~Giit~  175 (282)
T 2yzq_A          105 GILTVGDIIRRYFAKS-E---KYKGVEIEP--YYQRY-VSIVWEGTPLKAALKALLLSNS--MALPVVDSEGNLVGIVDE  175 (282)
T ss_dssp             EEEEHHHHHHHTTTTC-S---GGGGCBSTT--TSBSC-CCCEETTSBHHHHHHHHHTCSS--SEEEEECTTSCEEEEEEG
T ss_pred             EEEEHHHHHHHHHhcc-C---CcccCcHHH--HhCCC-CEEECCCCCHHHHHHHHHHcCC--cEEEEEcCCCeEEEEEEH
Confidence            9999999998 76532 0   011334554  67777 9999999999999999999999  999999988999999777


Q ss_pred             CccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccc
Q 015178          246 FSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGS  325 (412)
Q Consensus       246 ~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  325 (412)
                      .||......        .     .+....  .-.+... ..++.......+   +..                       
T Consensus       176 ~dl~~~~~~--------~-----~~~~~~--~~~~~~~-~~~~~~~~~~~~---~~~-----------------------  213 (282)
T 2yzq_A          176 TDLLRDSEI--------V-----RIMKST--ELAASSE-EEWILESHPTLL---FEK-----------------------  213 (282)
T ss_dssp             GGGGGCGGG--------C-----C--------------------------------------------------------
T ss_pred             HHHhhhhhh--------h-----hhhccc--hhhhhhh-hhhhcccchHHH---HhH-----------------------
Confidence            666531100        0     111000  0000000 000000000000   000                       


Q ss_pred             cccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          326 AQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       326 ~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                       ........+++++|++++++|+|++++.+|+++|.+++++++||||++|+++||||++||++++.+
T Consensus       214 -~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          214 -FELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             ------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             -hhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence             000011234678999999999999999999999999999999999988899999999999987753

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.90  E-value=1.4e-23  Score=202.69  Aligned_cols=191  Identities=16%  Similarity=0.174  Sum_probs=156.4

Q ss_pred             cCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178          102 LQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       102 l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~  180 (412)
                      ...+|+++|...   ++++++++++.+|++.|. ++++++||.+                  ++++|++|+.||++++..
T Consensus        18 ~~~~V~dim~~~---~~~v~~~~~v~~a~~~m~~~~~~~~~V~d------------------~~l~GivT~~Di~~~~~~   76 (296)
T 3ddj_A           18 QGMNIETLMIKN---PPILSKEDRLGSAFKKINEGGIGRIIVAN------------------EKIEGLLTTRDLLSTVES   76 (296)
T ss_dssp             CCSSGGGTCEES---CCEECTTSBHHHHHHHTTGGGCCEEEEES------------------SSEEEEEEHHHHHGGGTT
T ss_pred             cccCHHHhccCC---CcEECCCccHHHHHHHHHHCCCceEEEEC------------------CeEEEEEeHHHHHHHhcc
Confidence            457899999855   899999999999999999 8999999974                  358899999999998743


Q ss_pred             ccC------cCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchh
Q 015178          181 CIG------LLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDET  254 (412)
Q Consensus       181 ~~~------~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~  254 (412)
                      ...      .+......++++  +|+++ ++++.+++++.+|+++|.++++  +++||+|++|+++|+            
T Consensus        77 ~~~~~~~~~~~~~~~~~~v~~--im~~~-~~~v~~~~~~~~a~~~m~~~~~--~~lpVvd~~~~lvGi------------  139 (296)
T 3ddj_A           77 YCKDSCSQGDLYHISTTPIID--YMTPN-PVTVYNTSDEFTAINIMVTRNF--GSLPVVDINDKPVGI------------  139 (296)
T ss_dssp             CC---CCHHHHHHHHTSBGGG--TSEES-CCCEETTSCHHHHHHHHHHHTC--SEEEEECTTSCEEEE------------
T ss_pred             cccccccchhhHHHhcccHHH--hccCC-CEEEcCCCCHHHHHHHHHHcCC--CEEEEEcCCCcEEEE------------
Confidence            110      000112455665  68888 9999999999999999999999  999999999999999            


Q ss_pred             HHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCc
Q 015178          255 VAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGY  334 (412)
Q Consensus       255 ~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  334 (412)
                             +|..|++.++...                         .                               ...
T Consensus       140 -------vt~~dl~~~~~~~-------------------------~-------------------------------~~~  156 (296)
T 3ddj_A          140 -------VTEREFLLLYKDL-------------------------D-------------------------------EIF  156 (296)
T ss_dssp             -------EEHHHHGGGGGGS-------------------------C-------------------------------CCC
T ss_pred             -------EeHHHHHHhhhcc-------------------------c-------------------------------ccc
Confidence                   6677776532100                         0                               001


Q ss_pred             cccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          335 SARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       335 ~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +++++|.++++++.+++++.+++++|.+++++++||+|++|+++|+||..||++++.+.
T Consensus       157 ~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~  215 (296)
T 3ddj_A          157 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA  215 (296)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             cHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence            24567888999999999999999999999999999999889999999999999998743

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.90  E-value=8.9e-23  Score=194.22  Aligned_cols=181  Identities=15%  Similarity=0.229  Sum_probs=147.0

Q ss_pred             ceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccC-------cCCC
Q 015178          116 VIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIG-------LLSP  187 (412)
Q Consensus       116 ~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~-------~l~~  187 (412)
                      +++++++++|+.+|+++|. ++++++||+++               ++++++|++|+.||++++.....       ....
T Consensus        13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~---------------~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~   77 (280)
T 3kh5_A           13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNA---------------GNNKVVGIITSMDIVDFMGGGSKYNLIREKHERN   77 (280)
T ss_dssp             CCCCBCTTSBHHHHHHHHHHHCCCEEEEECT---------------TTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTC
T ss_pred             CcEEECCCCcHHHHHHHHHhCCCcEeeEEEC---------------CCCeEEEEEEHHHHHHHhcccchhhhhhhccccc
Confidence            3899999999999999999 99999999863               13678999999999998743100       0010


Q ss_pred             ---CCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCH
Q 015178          188 ---TPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSA  264 (412)
Q Consensus       188 ---l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~  264 (412)
                         ....++++  +|+++ ++++.+++++.+|++.|.++++  +++||+|++|+++|+                   +|.
T Consensus        78 ~~~~~~~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~  133 (280)
T 3kh5_A           78 FLAAINEPVRE--IMEEN-VITLKENADIDEAIETFLTKNV--GGAPIVNDENQLISL-------------------ITE  133 (280)
T ss_dssp             HHHHTTSBGGG--TSBCS-CCCEETTCBHHHHHHHHHHTTC--SEEEEECTTCBEEEE-------------------EEH
T ss_pred             hhHHhhhhHHH--hcCCC-CEEECCCCCHHHHHHHHHhCCC--CEEEEEcCCCEEEEE-------------------EEH
Confidence               11346665  68888 9999999999999999999999  999999999999999                   667


Q ss_pred             hhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCc
Q 015178          265 GDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEA  344 (412)
Q Consensus       265 ~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~v  344 (412)
                      .|++.++...                         ..                              ...+++++|++++
T Consensus       134 ~dl~~~~~~~-------------------------~~------------------------------~~~~v~~~m~~~~  158 (280)
T 3kh5_A          134 RDVIRALLDK-------------------------ID------------------------------ENEVIDDYITRDV  158 (280)
T ss_dssp             HHHHHHHGGG-------------------------SC------------------------------TTCBSGGGCBCSC
T ss_pred             HHHHHHHhhc-------------------------CC------------------------------CCCCHHHHhCCCC
Confidence            8876642100                         00                              0012457888999


Q ss_pred             eEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          345 ILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       345 vt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      +++++++++.++++.|.+++++++||+ ++|+++|+||..||++++.
T Consensus       159 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          159 IVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             CCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHT
T ss_pred             eEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHh
Confidence            999999999999999999999999999 5689999999999999985

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.86  E-value=1.3e-21  Score=174.68  Aligned_cols=145  Identities=20%  Similarity=0.256  Sum_probs=105.6

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      -+|++  +|+++ ++++.+++|+.+|+++|.++++  +++||+|++|+++|+||..||.+.-..       .........
T Consensus        18 ~~V~d--iM~~~-v~~v~~~~tl~~a~~~m~~~~~--~~~pVvd~~g~lvGiit~~Dll~~~~~-------~~~~~~~~~   85 (170)
T 4esy_A           18 VPIRD--ILTSP-VVTVREDDTLDAVAKTMLEHQI--GCAPVVDQNGHLVGIITESDFLRGSIP-------FWIYEASEI   85 (170)
T ss_dssp             SBGGG--GCCSC-CCCEETTSBHHHHHHHHHHTTC--SEEEEECTTSCEEEEEEGGGGGGGTCC-------TTHHHHHHH
T ss_pred             CCHHH--hcCCC-CcEECCcCcHHHHHHHHHHcCC--eEEEEEcCCccEEEEEEHHHHHHHHhh-------ccccchhhh
Confidence            35665  79998 9999999999999999999999  999999999999999877777552200       000000000


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW  350 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~  350 (412)
                      ....             .   ...........                            ....++.++|+++++||+|+
T Consensus        86 ~~~~-------------~---~~~~~~~~~~~----------------------------~~~~~v~~im~~~~~tv~~~  121 (170)
T 4esy_A           86 LSRA-------------I---PAPEVEHLFET----------------------------GRKLTASAVMTQPVVTAAPE  121 (170)
T ss_dssp             HTTT-------------S---CHHHHHHHHHH----------------------------HTTCBHHHHCBCCSCCBCTT
T ss_pred             hhhc-------------c---chhhHHhhhcc----------------------------ccccchhhhcccCcccCCcc
Confidence            0000             0   00000000000                            01124678999999999999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      +++.+|+++|.++++|++||||+ |+++||||++||+++++.
T Consensus       122 ~~l~~a~~~m~~~~~~~lpVvd~-g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          122 DSVGSIADQMRRHGIHRIPVVQD-GVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             SBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHTTTSCC
T ss_pred             hhHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            99999999999999999999985 899999999999998864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.86  E-value=2.2e-21  Score=185.28  Aligned_cols=184  Identities=16%  Similarity=0.174  Sum_probs=143.1

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI   85 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di   85 (412)
                      .+.+++++|.  ++++++++ ++++.+|++.|.++++..+||+|.                      .++++|++|..|+
T Consensus        58 ~~~~v~~~m~--~~~~~v~~-~~~l~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Giit~~di  112 (282)
T 2yzq_A           58 DEEQLAMLVK--RDVPVVKE-NDTLKKAAKLMLEYDYRRVVVVDS----------------------KGKPVGILTVGDI  112 (282)
T ss_dssp             ------CCCB--SCCCEEET-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEEHHHH
T ss_pred             ccCCHHHHcC--CCCcEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCEEEEEEEHHHH
Confidence            3567899985  45889999 999999999999999999999995                      3589999999999


Q ss_pred             HH-HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178           86 IS-FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND  163 (412)
Q Consensus        86 l~-~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~  163 (412)
                      +. ++.+.+      .....+++++|...   ++++++++++.++++.|. ++++++||+++                ++
T Consensus       113 ~~~~~~~~~------~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----------------~~  167 (282)
T 2yzq_A          113 IRRYFAKSE------KYKGVEIEPYYQRY---VSIVWEGTPLKAALKALLLSNSMALPVVDS----------------EG  167 (282)
T ss_dssp             HHHTTTTCS------GGGGCBSTTTSBSC---CCCEETTSBHHHHHHHHHTCSSSEEEEECT----------------TS
T ss_pred             HHHHHhccC------CcccCcHHHHhCCC---CEEECCCCCHHHHHHHHHHcCCcEEEEEcC----------------CC
Confidence            99 766421      12256789999754   889999999999999999 88999999853                35


Q ss_pred             CeeeeecHHHHH------HHHHHcc---------------C-----cCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHH
Q 015178          164 SEYCWLTQEDLI------RYFLNCI---------------G-----LLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAI  217 (412)
Q Consensus       164 ~~v~iITq~DIv------~~l~~~~---------------~-----~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~  217 (412)
                      +++|+||..|++      +++..+.               .     ........++++  +|+++ ++++++++++.+|+
T Consensus       168 ~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~-~~~v~~~~~l~~a~  244 (282)
T 2yzq_A          168 NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE--IMTRD-VIVATPHMTVHEVA  244 (282)
T ss_dssp             CEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGG--TCBSS-CCCBCTTSBHHHHH
T ss_pred             eEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHH--hcCCC-CceeCCCCCHHHHH
Confidence            789999999999      6653100               0     001123456665  78888 99999999999999


Q ss_pred             HHHHhcCCCCceeEEEcCCCcEeeeec
Q 015178          218 PLIAQSHINQTSVALVDEEGRLVGDIS  244 (412)
Q Consensus       218 ~~m~~~~i~~s~vpVVd~~g~lvG~IS  244 (412)
                      ++|.++++  +.+||+|++|+++|+||
T Consensus       245 ~~m~~~~~--~~lpVvd~~~~lvGiit  269 (282)
T 2yzq_A          245 LKMAKYSI--EQLPVIRGEGDLIGLIR  269 (282)
T ss_dssp             HHHHHHTC--SEEEEEETTTEEEEEEE
T ss_pred             HHHHHcCc--ceeEEECCCCCEEEEEe
Confidence            99999999  99999998889999943

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.85  E-value=4.3e-21  Score=187.37  Aligned_cols=179  Identities=14%  Similarity=0.180  Sum_probs=144.0

Q ss_pred             CCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCC
Q 015178           17 KPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLL   96 (412)
Q Consensus        17 ~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~   96 (412)
                      .++++++++ ++++.+|++.|.++++.++||+|..+..                 ..++++|++|..||+.++...... 
T Consensus       121 ~~~~v~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~~~~-----------------~~~~l~Givt~~di~~~l~~~~~~-  181 (323)
T 3t4n_C          121 QLDTASIHP-SRPLFEACLKMLESRSGRIPLIDQDEET-----------------HREIVVSVLTQYRILKFVALNCRE-  181 (323)
T ss_dssp             ---CCCBCT-TSBHHHHHHHHHHHTCSEEEEEEECTTT-----------------CCEEEEEEEEHHHHHHHHHHHCGG-
T ss_pred             CCCceEeCC-CCcHHHHHHHHHhCCeeEEEEEecCCCC-----------------CccceEEEecHHHHHHHHHhcCCc-
Confidence            367899999 9999999999999999999999964320                 012499999999999998753211 


Q ss_pred             CcccccCCchhhh---ccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHH
Q 015178           97 NPESALQDPVSVL---LPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQE  172 (412)
Q Consensus        97 ~~~~~l~~~V~dv---m~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~  172 (412)
                        ......+|+++   |...   ++++.+++++.+|++.|. ++++++||+++                +++++|+||..
T Consensus       182 --~~~~~~~v~~~~~~m~~~---~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~----------------~~~~~Giit~~  240 (323)
T 3t4n_C          182 --THFLKIPIGDLNIITQDN---MKSCQMTTPVIDVIQMLTQGRVSSVPIIDE----------------NGYLINVYEAY  240 (323)
T ss_dssp             --GGGCCSBGGGTTCSBCTT---CCCBCTTSBHHHHHHHHHHHTCSEEEEECT----------------TCBEEEEEETT
T ss_pred             --hhhhhCcHHHcCCCCCCC---cEEECCCCcHHHHHHHHHHcCCCEEEEECC----------------CCeEEEEEeHH
Confidence              23456789999   7644   899999999999999999 89999999863                36789999999


Q ss_pred             HHHHHHHHccCcCCCCCCCCcccccCCCC------CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeee
Q 015178          173 DLIRYFLNCIGLLSPTPNQPINSLNIVDD------AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDI  243 (412)
Q Consensus       173 DIv~~l~~~~~~l~~l~~~~i~~L~i~~~------~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~I  243 (412)
                      |+++++......   ....++++  +|++      + ++++++++++.+|++.|.++++  ..+||||++|+++|+|
T Consensus       241 dl~~~~~~~~~~---~~~~~v~~--~m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~~~--~~l~Vvd~~~~l~Gii  309 (323)
T 3t4n_C          241 DVLGLIKGGIYN---DLSLSVGE--ALMRRSDDFEG-VYTCTKNDKLSTIMDNIRKARV--HRFFVVDDVGRLVGVL  309 (323)
T ss_dssp             HHHHHHHTTHHH---HTTSBHHH--HGGGSCTTCCC-CEEECTTCBHHHHHHHHHHSCC--CEEEEECTTSBEEEEE
T ss_pred             HHHHHHhhchhh---hccCCHHH--HHhhccccCCC-CEEECCCCCHHHHHHHHHHhCC--CEEEEECCCCcEEEEE
Confidence            999988653210   11345555  5665      6 9999999999999999999999  9999999999999993

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.84  E-value=1.3e-20  Score=184.69  Aligned_cols=202  Identities=15%  Similarity=0.156  Sum_probs=151.3

Q ss_pred             CchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHcc
Q 015178          104 DPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCI  182 (412)
Q Consensus       104 ~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~  182 (412)
                      .+|+++|... ..++++++++++.+|++.|. ++++++||.+++               .++.+|+||..|+++++....
T Consensus        35 ~~v~dim~p~-~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~---------------~~~~vGivt~~Dll~~l~~~~   98 (330)
T 2v8q_E           35 HRCYDLIPTS-SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK---------------KQSFVGMLTITDFINILHRYY   98 (330)
T ss_dssp             SBGGGGSCSE-EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT---------------TTEEEEEEEHHHHHHHHHHHH
T ss_pred             CcHhhhccCC-CcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC---------------CCeEEEEEEHHHHHHHHHHHH
Confidence            5799999422 34899999999999999999 999999998642               246899999999999876532


Q ss_pred             ---C-cCCCCCCCCcccc-----cCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeeecCCccCCcc
Q 015178          183 ---G-LLSPTPNQPINSL-----NIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDISPFSFNSCD  252 (412)
Q Consensus       183 ---~-~l~~l~~~~i~~L-----~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~IS~~dl~~~~  252 (412)
                         . ....+...+++.+     ++|+++ ++++.+++++.+|++.|.++++  +.+||+|+ +|+++|+          
T Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~~Gi----------  165 (330)
T 2v8q_E           99 KSALVQIYELEEHKIETWREVYLQDSFKP-LVCISPNASLFDAVSSLIRNKI--HRLPVIDPESGNTLYI----------  165 (330)
T ss_dssp             HHHTTTCCCGGGCBHHHHHHHHSSSSCCC-CCCBCTTSBHHHHHHHHHHHTC--SCEEEECTTTCCEEEE----------
T ss_pred             hccccchhHHhhccHHHHHHHHhhcccCC-ceEeCCCCCHHHHHHHHHHCCC--CeEEEEeCCCCcEEEE----------
Confidence               1 1111111222221     357888 9999999999999999999999  99999998 8999999          


Q ss_pred             hhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcccccccccccccc
Q 015178          253 ETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSR  332 (412)
Q Consensus       253 ~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  332 (412)
                               +|..|++.++..             ......+..+   +                                
T Consensus       166 ---------vt~~dl~~~~~~-------------~~~~~~~~~~---~--------------------------------  188 (330)
T 2v8q_E          166 ---------LTHKRILKFLKL-------------FITEFPKPEF---M--------------------------------  188 (330)
T ss_dssp             ---------ECHHHHHHHHHH-------------HSCSSSCCGG---G--------------------------------
T ss_pred             ---------EcHHHHHHHHHH-------------HhhccCchhh---h--------------------------------
Confidence                     667777764310             0000000000   0                                


Q ss_pred             Cccccc--ccc-CCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          333 GYSARV--VHR-SEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       333 ~~~a~~--~m~-~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      ...+.+  +|+ ++++++.+++++.++++.|.+++++++||+|++|+++|+||.+||++++.
T Consensus       189 ~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~  250 (330)
T 2v8q_E          189 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA  250 (330)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGG
T ss_pred             cCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHh
Confidence            001122  244 78999999999999999999999999999998899999999999998765

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.80  E-value=4.2e-19  Score=174.01  Aligned_cols=191  Identities=13%  Similarity=0.158  Sum_probs=148.9

Q ss_pred             ccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcc
Q 015178           14 CIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEE   93 (412)
Q Consensus        14 ~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~   93 (412)
                      |....+++++++ ++|+.+|++.|.++++..+||+|..+..                 ..+.++|++|..||+.++....
T Consensus       113 m~~~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~~~~~-----------------~~~~~~Givt~~dl~~~~~~~~  174 (334)
T 2qrd_G          113 GAIPPETIYVHP-MHSLMDACLAMSKSRARRIPLIDVDGET-----------------GSEMIVSVLTQYRILKFISMNC  174 (334)
T ss_dssp             TCSCSSCCCBCT-TSBHHHHHHHHHHSCCSEEEEEEEETTT-----------------TEEEEEEEEEHHHHHHHHHHHC
T ss_pred             ccCCCceeeeCC-CCcHHHHHHHHHHCCceEEEEEeCCCCc-----------------CccceEEEeeHHHHHHHHHhhc
Confidence            433334599999 9999999999999999999999963210                 0123999999999999886421


Q ss_pred             cCCCcccccCCchhhh---ccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeee
Q 015178           94 NLLNPESALQDPVSVL---LPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWL  169 (412)
Q Consensus        94 ~l~~~~~~l~~~V~dv---m~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iI  169 (412)
                      .   .......+|+++   |...   ++++.+++++.+|++.|. ++++++||+++                +++++|+|
T Consensus       175 ~---~~~~~~~~v~~l~~~m~~~---~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~----------------~~~~~Gii  232 (334)
T 2qrd_G          175 K---ETAMLRVPLNQMTIGTWSN---LATASMETKVYDVIKMLAEKNISAVPIVNS----------------EGTLLNVY  232 (334)
T ss_dssp             G---GGGGCCCBGGGSSCSBCSS---CCCBCTTSBHHHHHHHHHHHTCSEEEEECT----------------TCBEEEEE
T ss_pred             c---chhhhhCcHHHhCCcccCC---ceEECCCCcHHHHHHHHHHcCCcEEEEEcC----------------CCcEEEEE
Confidence            1   012245788885   7644   889999999999999999 89999999863                35789999


Q ss_pred             cHHHHHHHHHHccCcCCCCCCCCcccccCCCC------CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeee
Q 015178          170 TQEDLIRYFLNCIGLLSPTPNQPINSLNIVDD------AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDI  243 (412)
Q Consensus       170 Tq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~------~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~I  243 (412)
                      |..|+++++.....   .....++.+  +|++      + ++++++++++.+|++.|.++++  ..+||||++|+++|+ 
T Consensus       233 t~~dl~~~~~~~~~---~~~~~~v~~--~m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~~~--~~l~Vvd~~g~l~Gi-  303 (334)
T 2qrd_G          233 ESVDVMHLIQDGDY---SNLDLSVGE--ALLKRPANFDG-VHTCRATDRLDGIFDAIKHSRV--HRLFVVDENLKLEGI-  303 (334)
T ss_dssp             ETHHHHHHHTTSCG---GGGGSBHHH--HHTTCCTTCCC-CCEECTTCBHHHHHHHHHHSCC--CEEEEECTTCBEEEE-
T ss_pred             EHHHHHHHhhcccc---ccccCcHHH--HHhcccccCCC-CEEECCCCcHHHHHHHHHHcCC--CEEEEECCCCeEEEE-
Confidence            99999998754210   111344554  5664      6 9999999999999999999999  999999999999999 


Q ss_pred             cCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178          244 SPFSFNSCDETVAAAMVTLSAGDLMAYM  271 (412)
Q Consensus       244 S~~dl~~~~~~~~~~~~~ls~~Dl~~~~  271 (412)
                                        +|.+|++.++
T Consensus       304 ------------------it~~dil~~~  313 (334)
T 2qrd_G          304 ------------------LSLADILNYI  313 (334)
T ss_dssp             ------------------EEHHHHHHHH
T ss_pred             ------------------EeHHHHHHHH
Confidence                              6678887754

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.77  E-value=1.2e-19  Score=161.88  Aligned_cols=134  Identities=13%  Similarity=0.128  Sum_probs=110.4

Q ss_pred             cccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178            2 AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC   81 (412)
Q Consensus         2 ~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt   81 (412)
                      +..|++.+|+|+|.  ++++++++ ++|+.+|++.|.+++++++||+|+                      +|+++|+||
T Consensus        12 ~~~l~~~~V~diM~--~~v~~v~~-~~tl~~a~~~m~~~~~~~~pVvd~----------------------~g~lvGiit   66 (170)
T 4esy_A           12 ARAIRQVPIRDILT--SPVVTVRE-DDTLDAVAKTMLEHQIGCAPVVDQ----------------------NGHLVGIIT   66 (170)
T ss_dssp             HHHHHTSBGGGGCC--SCCCCEET-TSBHHHHHHHHHHTTCSEEEEECT----------------------TSCEEEEEE
T ss_pred             HHHHcCCCHHHhcC--CCCcEECC-cCcHHHHHHHHHHcCCeEEEEEcC----------------------CccEEEEEE
Confidence            44678899999994  68999999 999999999999999999999996                      368999999


Q ss_pred             hHHHHHHhhhcc----------cCCC------cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecC
Q 015178           82 MVDIISFLCKEE----------NLLN------PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPL  144 (412)
Q Consensus        82 ~~Dil~~l~~~~----------~l~~------~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~  144 (412)
                      ..||++.+....          ....      .......+++++|+..   +++++++++|.+|+++|. +|+|++||++
T Consensus        67 ~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~tv~~~~~l~~a~~~m~~~~~~~lpVvd  143 (170)
T 4esy_A           67 ESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTASAVMTQP---VVTAAPEDSVGSIADQMRRHGIHRIPVVQ  143 (170)
T ss_dssp             GGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCC---SCCBCTTSBHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHHHhhccccchhhhhhhccchhhHHhhhccccccchhhhcccC---cccCCcchhHHHHHHHHHHcCCcEEEEEE
Confidence            999988654210          0000      0112357899999865   899999999999999999 9999999985


Q ss_pred             CCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178          145 PAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~  180 (412)
                      +                 ++++||||++||+++|..
T Consensus       144 ~-----------------g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          144 D-----------------GVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             T-----------------TEEEEEEEHHHHTTTSCC
T ss_pred             C-----------------CEEEEEEEHHHHHHHHHh
Confidence            2                 578999999999998743

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.77  E-value=9.4e-19  Score=154.83  Aligned_cols=127  Identities=20%  Similarity=0.301  Sum_probs=100.0

Q ss_pred             CcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178          192 PINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA  269 (412)
Q Consensus       192 ~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~  269 (412)
                      ++++  +|+  .+ ++++.+++|+.+|+++|.++++  +++||+|++|+++|+                   +|.+|++.
T Consensus        16 ~~~~--iM~P~~~-v~~v~~~~t~~~a~~~m~~~~~--s~~pVvd~~~~lvGi-------------------it~~Di~~   71 (156)
T 3k6e_A           16 QEET--FLTPAKN-LAVLIDTHNADHATLLLSQMTY--TRVPVVTDEKQFVGT-------------------IGLRDIMA   71 (156)
T ss_dssp             TGGG--GEEETTS-SCCEETTSBHHHHHHHHTTSSS--SEEEEECC-CBEEEE-------------------EEHHHHHH
T ss_pred             cHHH--hCcchhH-eEEECCcCCHHHHHHHHHHcCC--cEEEEEcCCCcEEEE-------------------EEecchhh
Confidence            3444  455  45 9999999999999999999999  999999999999999                   66778776


Q ss_pred             hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178          270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP  349 (412)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~  349 (412)
                      +....                 ....  ..+                               ...++.++|++++++|++
T Consensus        72 ~~~~~-----------------~~~~--~~~-------------------------------~~~~v~~im~~~~~~v~~  101 (156)
T 3k6e_A           72 YQMEH-----------------DLSQ--EIM-------------------------------ADTDIVHMTKTDVAVVSP  101 (156)
T ss_dssp             HHHHH-----------------TCCH--HHH-------------------------------TTSBGGGTCBCSCCCBCT
T ss_pred             hhhhc-----------------cccc--ccc-------------------------------cccCHHHhhcCCceeccc
Confidence            43100                 0000  000                               012356789999999999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178          350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL  394 (412)
Q Consensus       350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~  394 (412)
                      ++++.+++++|.++++  +||||++|+++||||++||++++...+
T Consensus       102 ~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~~~  144 (156)
T 3k6e_A          102 DFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNALL  144 (156)
T ss_dssp             TCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHHHh
Confidence            9999999999998764  999999999999999999999997654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.76  E-value=2.3e-18  Score=149.53  Aligned_cols=122  Identities=13%  Similarity=0.184  Sum_probs=103.6

Q ss_pred             CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178          190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD  266 (412)
Q Consensus       190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D  266 (412)
                      ..++++  +|++  + ++++.+++++.+|++.|.++++  +++||+|++ |+++|+                   +|.+|
T Consensus        22 ~~~v~d--iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~d   77 (148)
T 3lv9_A           22 EKKIRE--IMVPRTD-MVCIYESDSEEKILAILKEEGV--TRYPVCRKNKDDILGF-------------------VHIRD   77 (148)
T ss_dssp             TCBGGG--TSEETTT-CCCEETTCCHHHHHHHHHHSCC--SEEEEESSSTTSEEEE-------------------EEHHH
T ss_pred             CCCHHH--ccccHHH-eEEECCCCCHHHHHHHHHHCCC--CEEEEEcCCCCcEEEE-------------------EEHHH
Confidence            456665  6887  7 9999999999999999999999  999999988 899999                   66788


Q ss_pred             hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178          267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL  346 (412)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt  346 (412)
                      ++....                            ..             .                ..++.++| +++++
T Consensus        78 l~~~~~----------------------------~~-------------~----------------~~~v~~~m-~~~~~   99 (148)
T 3lv9_A           78 LYNQKI----------------------------NE-------------N----------------KIELEEIL-RDIIY   99 (148)
T ss_dssp             HHHHHH----------------------------HH-------------S----------------CCCGGGTC-BCCEE
T ss_pred             HHHHHh----------------------------cC-------------C----------------CccHHHhc-CCCeE
Confidence            766320                            00             0                01245678 88999


Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +++++++.+++++|.+++++++||||++|+++||||+.||++++...
T Consensus       100 v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A          100 ISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             EETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred             ECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999998864

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.76  E-value=2e-18  Score=154.36  Aligned_cols=124  Identities=18%  Similarity=0.213  Sum_probs=103.5

Q ss_pred             CCCcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178          190 NQPINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD  266 (412)
Q Consensus       190 ~~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D  266 (412)
                      ..++++  +|+  .+ ++++++++++.+|++.|.++++  +++||+|++ |+++|+                   +|.+|
T Consensus        41 ~~~v~d--iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~d   96 (172)
T 3lhh_A           41 ERTISS--LMVPRSD-IVFLDLNLPLDANLRTVMQSPH--SRFPVCRNNVDDMVGI-------------------ISAKQ   96 (172)
T ss_dssp             --CTTT--TSEEGGG-CCCEETTSCHHHHHHHHHTCCC--SEEEEESSSTTSEEEE-------------------EEHHH
T ss_pred             CCCHHH--hCccHHH-eEEEcCCCCHHHHHHHHHhCCC--CEEEEEeCCCCeEEEE-------------------EEHHH
Confidence            445665  687  66 9999999999999999999999  999999988 899999                   66788


Q ss_pred             hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178          267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL  346 (412)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt  346 (412)
                      ++.....                            ..                             ..++.++| +++++
T Consensus        97 l~~~~~~----------------------------~~-----------------------------~~~v~~im-~~~~~  118 (172)
T 3lhh_A           97 LLSESIA----------------------------GE-----------------------------RLELVDLV-KNCNF  118 (172)
T ss_dssp             HHHHHHT----------------------------TC-----------------------------CCCGGGGC-BCCEE
T ss_pred             HHHHHhh----------------------------cC-----------------------------cccHHHHh-cCCeE
Confidence            7763210                            00                             01245788 89999


Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      +.+++++.+++.+|.+++++++||||++|+++||||++||++++...+.
T Consensus       119 v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~  167 (172)
T 3lhh_A          119 VPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFF  167 (172)
T ss_dssp             EETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC
T ss_pred             eCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCc
Confidence            9999999999999999999999999999999999999999999986543

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.76  E-value=1.6e-18  Score=148.92  Aligned_cols=121  Identities=17%  Similarity=0.241  Sum_probs=95.1

Q ss_pred             CCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178          198 IVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG  274 (412)
Q Consensus       198 i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~  274 (412)
                      +|+  ++ ++++.+++++.+|+++|.++++  +++||+|++ |+++|+                   +|.+|++.++..+
T Consensus         8 iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~--~~~pVvd~~~~~~vGi-------------------vt~~dl~~~~~~~   65 (136)
T 3lfr_A            8 IMVPRSQ-MISIKATQTPREFLPAVIDAAH--SRYPVIGESHDDVLGV-------------------LLAKDLLPLILKA   65 (136)
T ss_dssp             HSEEGGG-CCCEETTCCHHHHHHHHHHHCC--SEEEEESSSTTCEEEE-------------------EEGGGGGGGGGSS
T ss_pred             ccccHHH-EEEEcCCCCHHHHHHHHHhCCC--CEEEEEcCCCCcEEEE-------------------EEHHHHHHHHHhc
Confidence            577  45 8999999999999999999999  999999987 799999                   4556665432100


Q ss_pred             CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHH
Q 015178          275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLM  354 (412)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~  354 (412)
                      .                         ..                              ..++.++|+. ++++.+++++.
T Consensus        66 ~-------------------------~~------------------------------~~~v~~~m~~-~~~v~~~~~l~   89 (136)
T 3lfr_A           66 D-------------------------GD------------------------------SDDVKKLLRP-ATFVPESKRLN   89 (136)
T ss_dssp             S-------------------------GG------------------------------GCCGGGTCBC-CCEEETTCBHH
T ss_pred             c-------------------------CC------------------------------CcCHHHHcCC-CeEECCCCcHH
Confidence            0                         00                              0123467754 89999999999


Q ss_pred             HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      +++++|.+++++++||+|++|+++||||++||++++..++..
T Consensus        90 ~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~d  131 (136)
T 3lfr_A           90 VLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIED  131 (136)
T ss_dssp             HHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC------
T ss_pred             HHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999998875543

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.76  E-value=3.7e-18  Score=145.12  Aligned_cols=122  Identities=15%  Similarity=0.223  Sum_probs=99.4

Q ss_pred             CCCcccccCCCCC-cEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178          190 NQPINSLNIVDDA-GIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDL  267 (412)
Q Consensus       190 ~~~i~~L~i~~~~-~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl  267 (412)
                      ..++++  +|++. .++++.+++++.+|++.|.++++  +++||+|++ |+++|+                   +|.+|+
T Consensus         5 ~~~v~~--iM~~~~~v~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~~Gi-------------------vt~~dl   61 (130)
T 3i8n_A            5 DVPVTQ--VMTPRPVVFRVDATMTINEFLDKHKDTPF--SRPLVYSEQKDNIIGF-------------------VHRLEL   61 (130)
T ss_dssp             --CCTT--TSCCBCCCCEEETTSBHHHHHHHTTTCSC--SCCEEESSSTTCEEEE-------------------CCHHHH
T ss_pred             cCCHhh--CCCcHHHEEEEcCCCCHHHHHHHHHhCCC--CEEEEEeCCCCcEEEE-------------------EEHHHH
Confidence            345665  67732 27899999999999999999999  999999987 899999                   778888


Q ss_pred             hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178          268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC  347 (412)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~  347 (412)
                      +.....+                            .            .                ..++.++| ++++++
T Consensus        62 ~~~~~~~----------------------------~------------~----------------~~~v~~~m-~~~~~v   84 (130)
T 3i8n_A           62 FKMQQSG----------------------------S------------G----------------QKQLGAVM-RPIQVV   84 (130)
T ss_dssp             HHHHHTT----------------------------T------------T----------------TSBHHHHS-EECCEE
T ss_pred             HHHHhcC----------------------------C------------C----------------cCCHHHHh-cCCcCc
Confidence            7642100                            0            0                01234667 468999


Q ss_pred             CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      ++++++.+++++|.+++++++||||++|+++||||+.||++++.
T Consensus        85 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           85 LNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             ETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence            99999999999999999999999999999999999999999986

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.76  E-value=4e-18  Score=144.89  Aligned_cols=120  Identities=19%  Similarity=0.292  Sum_probs=97.4

Q ss_pred             CCcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178          191 QPINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDL  267 (412)
Q Consensus       191 ~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl  267 (412)
                      .++++  +|+  ++ ++++++++++.+|++.|.++++  +++||+|++ |+++|+                   +|.+|+
T Consensus         5 ~~v~d--iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~~Gi-------------------vt~~dl   60 (129)
T 3jtf_A            5 RTVAD--IMVPRSR-MDLLDISQPLPQLLATIIETAH--SRFPVYEDDRDNIIGI-------------------LLAKDL   60 (129)
T ss_dssp             CBHHH--HCEEGGG-CCCEETTSCHHHHHHHHHHSCC--SEEEEESSSTTCEEEE-------------------EEGGGG
T ss_pred             CCHHH--hCccHHH-eEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCcEEEE-------------------EEHHHH
Confidence            34554  577  56 8999999999999999999999  999999986 899999                   455666


Q ss_pred             hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178          268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC  347 (412)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~  347 (412)
                      +.+....                                                          ..+++++|+ +++++
T Consensus        61 ~~~~~~~----------------------------------------------------------~~~v~~~m~-~~~~v   81 (129)
T 3jtf_A           61 LRYMLEP----------------------------------------------------------ALDIRSLVR-PAVFI   81 (129)
T ss_dssp             GGGGTCT----------------------------------------------------------TSCGGGGCB-CCCEE
T ss_pred             HhHhccC----------------------------------------------------------CcCHHHHhC-CCeEe
Confidence            5432100                                                          001345664 58999


Q ss_pred             CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      .+++++.+++++|.+++++++||+|++|+++||||++||++++..+
T Consensus        82 ~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A           82 PEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             ETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence            9999999999999999999999999989999999999999998864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.75  E-value=9.7e-18  Score=147.60  Aligned_cols=135  Identities=15%  Similarity=0.196  Sum_probs=107.4

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      .++++  +|++. + ++.+++++.+|++.|.++++  +.+||+|++|+++|+                   +|..|++..
T Consensus        17 ~~v~~--im~~~-~-~v~~~~~~~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~~   71 (159)
T 3fv6_A           17 LQVKD--FQSIP-V-VIHENVSVYDAICTMFLEDV--GTLFVVDRDAVLVGV-------------------LSRKDLLRA   71 (159)
T ss_dssp             CBGGG--SCBCC-C-EEETTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE-------------------EEHHHHHHH
T ss_pred             CCHHH--HcCCC-E-EECCCCcHHHHHHHHHHCCC--CEEEEEcCCCcEEEE-------------------EeHHHHHHH
Confidence            35555  57654 5 99999999999999999999  999999999999999                   667777663


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCH  348 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~  348 (412)
                      +..+                            .             .             ....++.++|.+  ++++++
T Consensus        72 ~~~~----------------------------~-------------~-------------~~~~~v~~~m~~~~~~~~v~   97 (159)
T 3fv6_A           72 SIGQ----------------------------Q-------------E-------------LTSVPVHIIMTRMPNITVCR   97 (159)
T ss_dssp             HTSC----------------------------S-------------C-------------TTTCBGGGTSEETTSCCCBC
T ss_pred             hhcc----------------------------C-------------c-------------ccCcCHHHHHcCCCCcEEEC
Confidence            2100                            0             0             001124677887  899999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEEeCCC---cEEEEEehHHHHHHHHHHHhhccccCCCC
Q 015178          349 PWSSLMAVIMQALARRVSYVWVVEEDC---TLVGIVTFTGMLRVIRDRLRSMAKAENPN  404 (412)
Q Consensus       349 ~~~sl~~v~~~m~~~~ihrl~VVD~~~---~lvGIVT~~DIL~~l~~~~~~~~~~~~~~  404 (412)
                      +++++.+++++|.+++++++||||++|   +++||||++||++++.+.....+..++|.
T Consensus        98 ~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~~~~~~~~~~  156 (159)
T 3fv6_A           98 REDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSENEILLQHHH  156 (159)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHTTCCC-----
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhhcchhhhhcc
Confidence            999999999999999999999999988   99999999999999999888777777664

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.75  E-value=5e-18  Score=141.85  Aligned_cols=115  Identities=21%  Similarity=0.266  Sum_probs=99.6

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|+++ ++++.+++++.+|++.|.++++  +.+||+|++|+++|+                   ++..|++..+..    
T Consensus         6 im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~G~-------------------vt~~dl~~~~~~----   59 (122)
T 3kpb_A            6 ILSKP-PITAHSNISIMEAAKILIKHNI--NHLPIVDEHGKLVGI-------------------ITSWDIAKALAQ----   59 (122)
T ss_dssp             HCCSC-CCCEETTSBHHHHHHHHHHHTC--SCEEEECTTSBEEEE-------------------ECHHHHHHHHHT----
T ss_pred             hhCCC-CEEeCCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEE-------------------EEHHHHHHHHHh----
Confidence            67888 9999999999999999999999  999999999999999                   677887763210    


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                               .                             ..++.++|.++++++.+++++.+++
T Consensus        60 -------------------------~-----------------------------~~~v~~~~~~~~~~v~~~~~l~~~~   85 (122)
T 3kpb_A           60 -------------------------N-----------------------------KKTIEEIMTRNVITAHEDEPVDHVA   85 (122)
T ss_dssp             -------------------------T-----------------------------CCBGGGTSBSSCCCEETTSBHHHHH
T ss_pred             -------------------------c-----------------------------ccCHHHHhcCCCeEECCCCCHHHHH
Confidence                                     0                             0024567888999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ++|.+++++++||+|++|+++|+||+.||++++.+
T Consensus        86 ~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           86 IKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             HHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             HHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence            99999999999999999999999999999998764

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.75  E-value=7.5e-18  Score=143.99  Aligned_cols=130  Identities=18%  Similarity=0.349  Sum_probs=105.7

Q ss_pred             CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178          190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA  269 (412)
Q Consensus       190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~  269 (412)
                      ..++++  +|+++ ++++.+++++.+|++.|.++++  +++||+|++|+++|+                   +|..|++.
T Consensus         6 ~~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~   61 (138)
T 2yzi_A            6 KAPIKV--YMTKK-LLGVKPSTSVQEASRLMMEFDV--GSLVVINDDGNVVGF-------------------FTKSDIIR   61 (138)
T ss_dssp             TSBGGG--TCBCC-CCEECTTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE-------------------EEHHHHHH
T ss_pred             hhhHHH--HhcCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------EeHHHHHH
Confidence            345555  68888 9999999999999999999999  999999988999999                   66777753


Q ss_pred             -hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeC
Q 015178          270 -YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCH  348 (412)
Q Consensus       270 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~  348 (412)
                       ++..+                                    .                   ....++.++|.+++++++
T Consensus        62 ~~~~~~------------------------------------~-------------------~~~~~v~~~m~~~~~~v~   86 (138)
T 2yzi_A           62 RVIVPG------------------------------------L-------------------PYDIPVERIMTRNLITAN   86 (138)
T ss_dssp             HTTTTC------------------------------------C-------------------CTTSBGGGTCBCSCCEEE
T ss_pred             HHHhcC------------------------------------C-------------------cccCCHHHHhhCCCeEEC
Confidence             21100                                    0                   001224578889999999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhccc
Q 015178          349 PWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAK  399 (412)
Q Consensus       349 ~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~~~  399 (412)
                      +++++.+++++|.+++++++ |||++|+++|+||+.||++++.+.....+.
T Consensus        87 ~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~~~~  136 (138)
T 2yzi_A           87 VNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLETAIS  136 (138)
T ss_dssp             TTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCCC--
T ss_pred             CCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999 999889999999999999999876655543

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.75  E-value=1.2e-17  Score=141.75  Aligned_cols=127  Identities=18%  Similarity=0.246  Sum_probs=103.8

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      .++++  +|.++ ++++.+++++.+|++.|.++++  +++||+| +|+++|+                   +|..|++.+
T Consensus         4 ~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd-~~~~~Gi-------------------vt~~dl~~~   58 (133)
T 2ef7_A            4 EIVKE--YMKTQ-VISVTKDAKLNDIAKVMTEKNI--GSVIVVD-GNKPVGI-------------------ITERDIVKA   58 (133)
T ss_dssp             CBGGG--TSBCS-CCEEETTCBHHHHHHHHHHHTC--SEEEEEE-TTEEEEE-------------------EEHHHHHHH
T ss_pred             ccHHH--hccCC-CEEECCCCcHHHHHHHHHhcCC--CEEEEEE-CCEEEEE-------------------EcHHHHHHH
Confidence            34554  68888 9999999999999999999999  9999999 8999999                   667777653


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW  350 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~  350 (412)
                      ...+                                    .    .               ...++.++|.+++++|+++
T Consensus        59 ~~~~------------------------------------~----~---------------~~~~v~~~~~~~~~~v~~~   83 (133)
T 2ef7_A           59 IGKG------------------------------------K----S---------------LETKAEEFMTASLITIRED   83 (133)
T ss_dssp             HHTT------------------------------------C----C---------------TTCBGGGTSEECCCCEETT
T ss_pred             HhcC------------------------------------C----C---------------cccCHHHHcCCCCEEECCC
Confidence            2100                                    0    0               0112456788899999999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178          351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM  397 (412)
Q Consensus       351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~  397 (412)
                      +++.+++++|.+++++++||||++|+++|+||+.||++++.+....+
T Consensus        84 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~~l  130 (133)
T 2ef7_A           84 SPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETM  130 (133)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHHHh
Confidence            99999999999999999999998899999999999999998876543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.75  E-value=3.9e-18  Score=144.40  Aligned_cols=116  Identities=18%  Similarity=0.312  Sum_probs=93.8

Q ss_pred             CCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178          198 IVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG  274 (412)
Q Consensus       198 i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~  274 (412)
                      +|+  .+ ++++.+++++.+|++.|.++++  +++||+|++ |+++|+|                   |.+|++..+...
T Consensus         8 iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~vGiv-------------------t~~dl~~~~~~~   65 (127)
T 3nqr_A            8 IMIPRSQ-MITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHIEGIL-------------------MAKDLLPFMRSD   65 (127)
T ss_dssp             HSEEGGG-CCCEETTCCHHHHHHHHHHHCC--SEEEEESSSTTCEEEEE-------------------EGGGGGGGGSTT
T ss_pred             hcccHHH-eEEEcCCCCHHHHHHHHHhCCC--CEEEEEcCCCCcEEEEE-------------------EHHHHHHHHhcc
Confidence            576  45 8999999999999999999999  999999988 8999994                   556655432100


Q ss_pred             CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHH
Q 015178          275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLM  354 (412)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~  354 (412)
                                                               .               ...+++++|+ +++++++++++.
T Consensus        66 -----------------------------------------~---------------~~~~v~~~m~-~~~~v~~~~~l~   88 (127)
T 3nqr_A           66 -----------------------------------------A---------------EAFSMDKVLR-TAVVVPESKRVD   88 (127)
T ss_dssp             -----------------------------------------C---------------CCCCHHHHCB-CCCEEETTCBHH
T ss_pred             -----------------------------------------C---------------CCCCHHHHcC-CCeEECCCCcHH
Confidence                                                     0               0012345674 478999999999


Q ss_pred             HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      +++++|.+++++++||||++|+++||||++||++++..
T Consensus        89 ~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           89 RMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             HHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred             HHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            99999999999999999999999999999999998753

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.74  E-value=8.6e-18  Score=144.08  Aligned_cols=128  Identities=26%  Similarity=0.390  Sum_probs=100.6

Q ss_pred             CCCccccc-CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhh
Q 015178          190 NQPINSLN-IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLM  268 (412)
Q Consensus       190 ~~~i~~L~-i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~  268 (412)
                      .++++++. +|.++ ++++.+++++.+|++.|.++++  +++||+|++|+++|+                   +|..|++
T Consensus         7 ~~~v~~~~~~~~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~   64 (144)
T 2nyc_A            7 KIPIGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRV--SSVPIIDENGYLINV-------------------YEAYDVL   64 (144)
T ss_dssp             GSBGGGSSCCBCSS-CCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHHH
T ss_pred             hcchhhcCCCCCCC-ceEECCCCcHHHHHHHHHHcCc--ceeeEEcCCCcEEEE-------------------EcHHHHH
Confidence            56777765 45667 9999999999999999999999  999999988999999                   5677776


Q ss_pred             hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC------
Q 015178          269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS------  342 (412)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~------  342 (412)
                      .+...+.                        +..                             ...++.++|.+      
T Consensus        65 ~~~~~~~------------------------~~~-----------------------------~~~~v~~~m~~~~~~~~   91 (144)
T 2nyc_A           65 GLIKGGI------------------------YND-----------------------------LSLSVGEALMRRSDDFE   91 (144)
T ss_dssp             HHHHTC---------------------------------------------------------CCSBHHHHHHHCC----
T ss_pred             HHhcccc------------------------ccc-----------------------------CCccHHHHHhcCccccC
Confidence            5431100                        000                             00112344543      


Q ss_pred             CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       343 ~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      +++++.+++++.+++++|.+++++++||||++|+++|+||+.||++++.+
T Consensus        92 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           92 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             --CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            68999999999999999999999999999988999999999999999875

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.74  E-value=8e-18  Score=142.50  Aligned_cols=123  Identities=15%  Similarity=0.122  Sum_probs=102.8

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      -++++  +|+++ +.++.+++++.+|++.|.++++  +.+||+|+ |+++|+                   +|.+|+++.
T Consensus         5 ~~v~~--~m~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~-~~~~Gi-------------------vt~~dl~~~   59 (128)
T 3gby_A            5 VTFSY--LAETD-YPVFTLGGSTADAARRLAASGC--ACAPVLDG-ERYLGM-------------------VHLSRLLEG   59 (128)
T ss_dssp             CBGGG--GCBCC-SCCEETTSBHHHHHHHHHHHTC--SEEEEEET-TEEEEE-------------------EEHHHHHTT
T ss_pred             eEHHH--hhcCC-cceECCCCCHHHHHHHHHHCCC--cEEEEEEC-CEEEEE-------------------EEHHHHHHH
Confidence            34554  68888 9999999999999999999999  99999999 999999                   667777653


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW  350 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~  350 (412)
                      ...+                                    .    .               ...+++++|.+++++++++
T Consensus        60 ~~~~------------------------------------~----~---------------~~~~v~~~m~~~~~~v~~~   84 (128)
T 3gby_A           60 RKGW------------------------------------P----T---------------VKEKLGEELLETVRSYRPG   84 (128)
T ss_dssp             CSSS------------------------------------C----C---------------TTCBCCGGGCBCCCCBCTT
T ss_pred             HhhC------------------------------------C----c---------------ccCcHHHHccCCCcEECCC
Confidence            2100                                    0    0               0012456788999999999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +++.+++++|.+++++++||||++|+++|+||+.||++++.+.
T Consensus        85 ~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~  127 (128)
T 3gby_A           85 EQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER  127 (128)
T ss_dssp             SBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998753

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.73  E-value=2.3e-17  Score=141.88  Aligned_cols=122  Identities=11%  Similarity=0.082  Sum_probs=102.1

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC--cEeeeecCCccCCcchhHHHhhhhcCHhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG--RLVGDISPFSFNSCDETVAAAMVTLSAGDLM  268 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g--~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~  268 (412)
                      .++++  +|+++ ++++.+++++.+|++.|.++++  +.+||+|++|  +++|+                   +|..|++
T Consensus         5 ~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~~~Gi-------------------vt~~dl~   60 (141)
T 2rih_A            5 IRTSE--LLKRP-PVSLPETATIREVATELAKNRV--GLAVLTARDNPKRPVAV-------------------VSERDIL   60 (141)
T ss_dssp             CBGGG--GCCSC-CEEEETTCBHHHHHHHHHHHTC--SEEEEEETTEEEEEEEE-------------------EEHHHHH
T ss_pred             eEHHH--HhcCC-CeEeCCCCcHHHHHHHHHHcCC--CEEEEEcCCCcceeEEE-------------------EEHHHHH
Confidence            35555  68888 9999999999999999999999  9999999988  99999                   6677776


Q ss_pred             hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeC
Q 015178          269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCH  348 (412)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~  348 (412)
                      .++..+                                    .    .               ...++.++|.+++++|.
T Consensus        61 ~~~~~~------------------------------------~----~---------------~~~~v~~~m~~~~~~v~   85 (141)
T 2rih_A           61 RAVAQR------------------------------------L----D---------------LDGPAMPIANSPITVLD   85 (141)
T ss_dssp             HHHHTT------------------------------------C----C---------------TTSBSGGGCBCCCEEET
T ss_pred             HHHhcC------------------------------------C----C---------------CCCCHHHHcCCCCeEEc
Confidence            632100                                    0    0               01124578889999999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          349 PWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       349 ~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ++ ++.+++++|.+++++++||||++|+++|+||+.||++++..
T Consensus        86 ~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           86 TD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             TS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             CC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence            99 99999999999999999999988999999999999988765

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.73  E-value=6.4e-18  Score=145.97  Aligned_cols=139  Identities=20%  Similarity=0.269  Sum_probs=102.0

Q ss_pred             CcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178          192 PINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA  269 (412)
Q Consensus       192 ~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~  269 (412)
                      ++++  +|++  + ++++.+++++.+|++.|.++++  +++||+|++|+++|+||                   .+|++.
T Consensus         6 ~v~~--im~~~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~G~vt-------------------~~dl~~   61 (152)
T 4gqw_A            6 TVGE--FMTKKED-LHVVKPTTTVDEALELLVENRI--TGFPVIDEDWKLVGLVS-------------------DYDLLA   61 (152)
T ss_dssp             BGGG--TSEESTT-CCCBCTTSBHHHHHHHHHHTTC--SEEEEECTTCBEEEEEE-------------------HHHHTT
T ss_pred             Ehhh--ccCCCCC-CeEECCCCcHHHHHHHHHHcCC--ceEEEEeCCCeEEEEEE-------------------HHHHHH
Confidence            4554  6776  6 9999999999999999999999  99999999999999955                   555544


Q ss_pred             hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178          270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP  349 (412)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~  349 (412)
                      +.........             +..+...+.                            .....++.++|.++++++.+
T Consensus        62 ~~~~~~~~~~-------------~~~~~~~~~----------------------------~~~~~~v~~~m~~~~~~v~~  100 (152)
T 4gqw_A           62 LDSGDSTWKT-------------FNAVQKLLS----------------------------KTNGKLVGDLMTPAPLVVEE  100 (152)
T ss_dssp             CC----CCHH-------------HHHHHTC---------------------------------CCBHHHHSEESCCCEES
T ss_pred             hhcccCcccc-------------hHHHHHHHH----------------------------HhccccHHHhcCCCceEECC
Confidence            3211000000             000000000                            00112356789889999999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      ++++.+++++|.+++++++||||++|+++||||.+||++++.+...
T Consensus       101 ~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~  146 (152)
T 4gqw_A          101 KTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR  146 (152)
T ss_dssp             SSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC---
T ss_pred             CCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence            9999999999999999999999988999999999999999987544

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.73  E-value=9.2e-18  Score=143.13  Aligned_cols=119  Identities=14%  Similarity=0.109  Sum_probs=97.0

Q ss_pred             CCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178          198 IVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG  274 (412)
Q Consensus       198 i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~  274 (412)
                      +|++  + ++++.+++++.+|+++|.++++  +++||+|+ +|+++|+                   +|.+|++.....+
T Consensus         7 iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~--~~~pVv~~~~~~lvGi-------------------vt~~dl~~~~~~~   64 (130)
T 3hf7_A            7 IMVPRNE-IVGIDINDDWKSIVRQLTHSPH--GRIVLYRDSLDDAISM-------------------LRVREAYRLMTEK   64 (130)
T ss_dssp             HSEEGGG-CCEEETTSCHHHHHHHHHTCSS--SEEEEESSSGGGEEEE-------------------EEHHHHHHHHTSS
T ss_pred             hCccHHH-EEEEcCCCCHHHHHHHHHHCCC--CeEEEEcCCCCcEEEE-------------------EEHHHHHHHHhcc
Confidence            5753  5 9999999999999999999999  99999976 5899999                   6678877643211


Q ss_pred             CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHH
Q 015178          275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLM  354 (412)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~  354 (412)
                      ....                                                      ..++.++| ++++++.+++++.
T Consensus        65 ~~~~------------------------------------------------------~~~v~~~m-~~~~~v~~~~~l~   89 (130)
T 3hf7_A           65 KEFT------------------------------------------------------KEIMLRAA-DEIYFVPEGTPLS   89 (130)
T ss_dssp             SCCC------------------------------------------------------HHHHHHHS-BCCCEEETTCBHH
T ss_pred             Cccc------------------------------------------------------hhhHHHhc-cCCeEeCCCCcHH
Confidence            0000                                                      01134566 6789999999999


Q ss_pred             HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +++++|.+++++++||+|++|+++||||+.||++++..+
T Consensus        90 ~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           90 TQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             HHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred             HHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence            999999999999999999999999999999999998754

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.73  E-value=1.9e-17  Score=141.32  Aligned_cols=125  Identities=18%  Similarity=0.277  Sum_probs=102.9

Q ss_pred             CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhh-h
Q 015178          190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDL-M  268 (412)
Q Consensus       190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl-~  268 (412)
                      ..++++  +|+++ ++++.+++++.+|++.|.++++  +++||+|++|+++|+                   ++..|+ +
T Consensus         7 ~~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~   62 (138)
T 2p9m_A            7 NIKVKD--VMTKN-VITAKRHEGVVEAFEKMLKYKI--SSLPVIDDENKVIGI-------------------VTTTDIGY   62 (138)
T ss_dssp             TCBGGG--TSBCS-CCCEETTSBHHHHHHHHHHHTC--CEEEEECTTCBEEEE-------------------EEHHHHHH
T ss_pred             cCCHHH--hhcCC-ceEECCCCcHHHHHHHHHHCCC--cEEEEECCCCeEEEE-------------------EEHHHHHH
Confidence            445665  68888 9999999999999999999999  999999988999999                   667777 6


Q ss_pred             hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeC
Q 015178          269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCH  348 (412)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~  348 (412)
                      .++..+                                          .             ....++.++|.+++++++
T Consensus        63 ~~~~~~------------------------------------------~-------------~~~~~v~~~m~~~~~~v~   87 (138)
T 2p9m_A           63 NLIRDK------------------------------------------Y-------------TLETTIGDVMTKDVITIH   87 (138)
T ss_dssp             HHTTTC------------------------------------------C-------------CSSCBHHHHSCSSCCCEE
T ss_pred             HHHhhc------------------------------------------c-------------cCCcCHHHHhCCCcEEEC
Confidence            532100                                          0             001124567888999999


Q ss_pred             CCCcHHHHHHHHHHcC-----CcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          349 PWSSLMAVIMQALARR-----VSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       349 ~~~sl~~v~~~m~~~~-----ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +++++.+++++|.+++     ++++||+|++|+++|+||..||++++.++
T Consensus        88 ~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  137 (138)
T 2p9m_A           88 EDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI  137 (138)
T ss_dssp             TTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence            9999999999999999     99999999889999999999999988763

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.72  E-value=7.4e-18  Score=147.41  Aligned_cols=124  Identities=18%  Similarity=0.228  Sum_probs=101.0

Q ss_pred             CCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEE-cCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178          191 QPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALV-DEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD  266 (412)
Q Consensus       191 ~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV-d~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D  266 (412)
                      .++++  +|++  + ++++.+++++.+|++.|.++++  +++||+ |++ |+++|+                   +|.+|
T Consensus        20 ~~v~~--iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVv~d~~~~~lvGi-------------------vt~~d   75 (153)
T 3oco_A           20 KVASD--VMVDRTS-MSVVDVDETIADALLLYLEEQY--SRFPVTADNDKDKIIGY-------------------AYNYD   75 (153)
T ss_dssp             CBHHH--HSEEGGG-CCCEETTSBHHHHHHHHHHHCC--SEEEEEETTEEEEEEEE-------------------EEHHH
T ss_pred             CEeee--Eecchhh-eEEEcCCCCHHHHHHHHHhCCC--CEEEEEECCCCCcEEEE-------------------EEHHH
Confidence            34554  5775  6 9999999999999999999999  999999 654 899999                   66788


Q ss_pred             hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178          267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL  346 (412)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt  346 (412)
                      ++..+.                            ...                             ..+++++| +++++
T Consensus        76 l~~~~~----------------------------~~~-----------------------------~~~v~~~m-~~~~~   97 (153)
T 3oco_A           76 IVRQAR----------------------------IDD-----------------------------KAKISTIM-RDIVS   97 (153)
T ss_dssp             HHHHHH----------------------------HHT-----------------------------TSBGGGTC-BCCEE
T ss_pred             HHhHHh----------------------------cCC-----------------------------CCcHHHHh-CCCeE
Confidence            776321                            000                             01245678 89999


Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      +.+++++.+++.+|.+++++++||||++|+++||||++||++++...+..
T Consensus        98 v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~d  147 (153)
T 3oco_A           98 VPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRD  147 (153)
T ss_dssp             EETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC----
T ss_pred             ECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCC
Confidence            99999999999999999999999999999999999999999999876543

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.72  E-value=1.4e-17  Score=146.22  Aligned_cols=143  Identities=14%  Similarity=0.168  Sum_probs=105.7

Q ss_pred             CCCCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHh
Q 015178          188 TPNQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAG  265 (412)
Q Consensus       188 l~~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~  265 (412)
                      +...++++  +|++  + ++++.+++++.+|++.|.++++  +++||+|++|+++|+                   +|..
T Consensus        11 l~~~~v~~--im~~~~~-~~~v~~~~~l~~a~~~m~~~~~--~~~pVvd~~~~lvGi-------------------vt~~   66 (159)
T 1yav_A           11 LLEATVGQ--FMIEADK-VAHVQVGNNLEHALLVLTKTGY--TAIPVLDPSYRLHGL-------------------IGTN   66 (159)
T ss_dssp             CTTCBHHH--HSEEGGG-SCCEETTCBHHHHHHHHHHHCC--SEEEEECTTCBEEEE-------------------EEHH
T ss_pred             HhHhhHHH--HhCCccc-eEEECCCCcHHHHHHHHHhCCC--cEEEEECCCCCEEEE-------------------eEHH
Confidence            33456665  5776  7 9999999999999999999999  999999999999999                   6677


Q ss_pred             hhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCce
Q 015178          266 DLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAI  345 (412)
Q Consensus       266 Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vv  345 (412)
                      |++.+......                +                                 ...+....++.++|.++++
T Consensus        67 dl~~~~~~~~~----------------~---------------------------------~~~~~~~~~v~~~m~~~~~   97 (159)
T 1yav_A           67 MIMNSIFGLER----------------I---------------------------------EFEKLDQITVEEVMLTDIP   97 (159)
T ss_dssp             HHHHHHBCSSS----------------B---------------------------------CGGGTTTSBHHHHSBCSCC
T ss_pred             HHHHHhhhhcc----------------c---------------------------------chhhhccCCHHHhcCCCCc
Confidence            77664311000                0                                 0000111235678888999


Q ss_pred             EeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhccccCCCCC
Q 015178          346 LCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENPNF  405 (412)
Q Consensus       346 t~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~~~~~~~~~  405 (412)
                      ++.+++++.+++++|.++++  +||||++|+++|+||++||++++.+.........+|.|
T Consensus        98 ~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~~~~~~~~~~  155 (159)
T 1yav_A           98 RLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRSLNKEGGSHH  155 (159)
T ss_dssp             EEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-----------
T ss_pred             eEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHhhcccccccc
Confidence            99999999999999999987  99999889999999999999999998887777777664

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.72  E-value=1.1e-17  Score=148.15  Aligned_cols=134  Identities=17%  Similarity=0.215  Sum_probs=106.4

Q ss_pred             cCCCCCCCCcccccCCCC---CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhh
Q 015178          184 LLSPTPNQPINSLNIVDD---AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMV  260 (412)
Q Consensus       184 ~l~~l~~~~i~~L~i~~~---~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~  260 (412)
                      ....+...++++  +|++   + ++++.+++++.+|+++|.++++  +++||+|++|+++|+                  
T Consensus        17 ~~~~l~~~~v~d--im~~~~~~-~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi------------------   73 (165)
T 3fhm_A           17 LYFQGMATFVKD--LLDRKGRD-VVTVGPDVSIGEAAGTLHAHKI--GAVVVTDADGVVLGI------------------   73 (165)
T ss_dssp             CCCSSSSCBHHH--HHHHHCSC-CCEECTTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE------------------
T ss_pred             hhHhhhhcCHHH--HhccCCCC-CeEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCeEEEE------------------
Confidence            344455556665  5664   5 9999999999999999999999  999999999999999                  


Q ss_pred             hcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccc
Q 015178          261 TLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVH  340 (412)
Q Consensus       261 ~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m  340 (412)
                       +|..|++..+..             .    +        ..                            ....++.++|
T Consensus        74 -vt~~dl~~~~~~-------------~----~--------~~----------------------------~~~~~v~~~m   99 (165)
T 3fhm_A           74 -FTERDLVKAVAG-------------Q----G--------AA----------------------------SLQQSVSVAM   99 (165)
T ss_dssp             -EEHHHHHHHHHH-------------H----G--------GG----------------------------GGTSBGGGTS
T ss_pred             -EEHHHHHHHHHh-------------c----C--------Cc----------------------------cccCCHHHHh
Confidence             667777663210             0    0        00                            0012356788


Q ss_pred             cCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          341 RSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       341 ~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      .+++++|.+++++.+++++|.+++++++||||+ |+++||||+.||++++.+...
T Consensus       100 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~~  153 (165)
T 3fhm_A          100 TKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEIE  153 (165)
T ss_dssp             BSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC--
T ss_pred             cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999 999999999999999876443

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.72  E-value=3.4e-17  Score=144.77  Aligned_cols=132  Identities=11%  Similarity=0.124  Sum_probs=110.0

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI   85 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di   85 (412)
                      ...++.++|+...+++++++ ++|+.+|+++|.+++++++||+|.                      +++++|+||..||
T Consensus        13 l~~~~~~iM~P~~~v~~v~~-~~t~~~a~~~m~~~~~s~~pVvd~----------------------~~~lvGiit~~Di   69 (156)
T 3k6e_A           13 LLGQEETFLTPAKNLAVLID-THNADHATLLLSQMTYTRVPVVTD----------------------EKQFVGTIGLRDI   69 (156)
T ss_dssp             HHTTGGGGEEETTSSCCEET-TSBHHHHHHHHTTSSSSEEEEECC-----------------------CBEEEEEEHHHH
T ss_pred             hhccHHHhCcchhHeEEECC-cCCHHHHHHHHHHcCCcEEEEEcC----------------------CCcEEEEEEecch
Confidence            34578999988789999999 999999999999999999999985                      3689999999999


Q ss_pred             HHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178           86 ISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDS  164 (412)
Q Consensus        86 l~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~  164 (412)
                      +.++.....  ........+|+++|...   ++++++++++.+|+++|. ++  .+||+++                +|+
T Consensus        70 ~~~~~~~~~--~~~~~~~~~v~~im~~~---~~~v~~~~~l~~~~~~m~~~~--~lpVVd~----------------~g~  126 (156)
T 3k6e_A           70 MAYQMEHDL--SQEIMADTDIVHMTKTD---VAVVSPDFTITEVLHKLVDES--FLPVVDA----------------EGI  126 (156)
T ss_dssp             HHHHHHHTC--CHHHHTTSBGGGTCBCS---CCCBCTTCCHHHHHHHTTTSS--EEEEECT----------------TSB
T ss_pred             hhhhhhccc--ccccccccCHHHhhcCC---ceecccccHHHHHHHHHHHcC--CeEEEec----------------CCE
Confidence            998875321  12234568899999865   899999999999999999 54  4888753                368


Q ss_pred             eeeeecHHHHHHHHHHccC
Q 015178          165 EYCWLTQEDLIRYFLNCIG  183 (412)
Q Consensus       165 ~v~iITq~DIv~~l~~~~~  183 (412)
                      ++||||++||++.+....+
T Consensus       127 l~GiiT~~Dil~~~~~~~~  145 (156)
T 3k6e_A          127 FQGIITRKSILKAVNALLH  145 (156)
T ss_dssp             EEEEEEHHHHHHHHHHHSC
T ss_pred             EEEEEEHHHHHHHHHHHhc
Confidence            9999999999999876443

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.71  E-value=1.4e-16  Score=147.25  Aligned_cols=137  Identities=15%  Similarity=0.192  Sum_probs=103.9

Q ss_pred             CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhc---CCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178          190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQS---HINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGD  266 (412)
Q Consensus       190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~---~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D  266 (412)
                      ..++++  +|+++ ++++.+++++.+|++.|+++   ++  +.+||+|++|+++|+                   +|.+|
T Consensus        53 ~~~v~~--iM~~~-~~~v~~~~tv~eal~~~~~~~~~~~--~~~~Vvd~~~~lvGi-------------------vt~~d  108 (205)
T 3kxr_A           53 ENEIGR--YTDHQ-MLVLSDKATVAQAQRFFRRIELDCN--DNLFIVDEADKYLGT-------------------VRRYD  108 (205)
T ss_dssp             TTCGGG--GCBCC-CCEEETTCBHHHHHHHHHHCCCTTC--CEEEEECTTCBEEEE-------------------EEHHH
T ss_pred             cchHHh--hccCc-eEEECCCCcHHHHHHHHHhhCccCe--eEEEEEcCCCeEEEE-------------------EEHHH
Confidence            445665  78888 99999999999999999997   78  999999999999999                   55666


Q ss_pred             hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178          267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL  346 (412)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt  346 (412)
                      ++....                                                            ..+++++|++++++
T Consensus       109 ll~~~~------------------------------------------------------------~~~v~~im~~~~~~  128 (205)
T 3kxr_A          109 IFKHEP------------------------------------------------------------HEPLISLLSEDSRA  128 (205)
T ss_dssp             HTTSCT------------------------------------------------------------TSBGGGGCCSSCCC
T ss_pred             HHhCCC------------------------------------------------------------cchHHHHhcCCCeE
Confidence            653100                                                            01245688889999


Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh----hcccc--CCCCCccccc
Q 015178          347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR----SMAKA--ENPNFCPVWI  410 (412)
Q Consensus       347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~----~~~~~--~~~~~~~~~~  410 (412)
                      +++++++.+++++|.+++++++||||++|+++||||..||++.+.++..    .+++.  +.--|-|+|-
T Consensus       129 v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~ed~~~~~g~~~~~~~~~~~~~  198 (205)
T 3kxr_A          129 LTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEAQLMATAGMDESDDLFAPILK  198 (205)
T ss_dssp             EETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC---------------------
T ss_pred             ECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHH
Confidence            9999999999999999999999999999999999999999999987543    33332  3335666663

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.71  E-value=4e-17  Score=141.61  Aligned_cols=130  Identities=14%  Similarity=0.197  Sum_probs=102.6

Q ss_pred             CcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178          192 PINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA  269 (412)
Q Consensus       192 ~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~  269 (412)
                      ++++  +|+  .+ ++++.+++++.+|++.|.++++  +++||+|++|+++|+                   +|..|++.
T Consensus        16 ~v~~--im~~~~~-~~~v~~~~~l~~a~~~~~~~~~--~~~pVvd~~~~~~Gi-------------------vt~~dl~~   71 (150)
T 3lqn_A           16 FVKD--LMISSEK-VAHVQIGNGLEHALLVLVKSGY--SAIPVLDPMYKLHGL-------------------ISTAMILD   71 (150)
T ss_dssp             BHHH--HSEEGGG-SCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHHHH
T ss_pred             Chhh--cccCCCc-eEEECCCCcHHHHHHHHHHcCC--cEEEEECCCCCEEEE-------------------EEHHHHHH
Confidence            4444  576  45 8999999999999999999999  999999999999999                   66777776


Q ss_pred             hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178          270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP  349 (412)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~  349 (412)
                      .+.....                ..                                 .......++.++|.+++++|++
T Consensus        72 ~~~~~~~----------------~~---------------------------------~~~~~~~~v~~~m~~~~~~v~~  102 (150)
T 3lqn_A           72 GILGLER----------------IE---------------------------------FERLEEMKVEQVMKQDIPVLKL  102 (150)
T ss_dssp             HTBCSSS----------------BC---------------------------------GGGGGGCBGGGTCBSSCCEEET
T ss_pred             HHHhhcc----------------cc---------------------------------hhHHhcCCHHHHhcCCCceeCC
Confidence            4311000                00                                 0000112356789999999999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      ++++.+++++|.++++  +||||++|+++||||++||++++.+....
T Consensus       103 ~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~~  147 (150)
T 3lqn_A          103 EDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQ  147 (150)
T ss_dssp             TCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhHh
Confidence            9999999999999997  99999889999999999999999886653

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.71  E-value=4.2e-17  Score=143.78  Aligned_cols=133  Identities=18%  Similarity=0.200  Sum_probs=104.1

Q ss_pred             CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178          192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM  271 (412)
Q Consensus       192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~  271 (412)
                      ++++  +|+++ ++++.+++++.+|+++|.++++  +++||+|++|+++|+                   +|..|++.+.
T Consensus         6 ~v~d--im~~~-~~~v~~~~tl~~a~~~m~~~~~--~~~pVvd~~~~lvGi-------------------vt~~dl~~~~   61 (160)
T 2o16_A            6 KVED--MMTRH-PHTLLRTHTLNDAKHLMEALDI--RHVPIVDANKKLLGI-------------------VSQRDLLAAQ   61 (160)
T ss_dssp             BGGG--TSEES-CCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHHHHHH
T ss_pred             cHHH--HhcCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------EeHHHHHHHH
Confidence            4554  68888 9999999999999999999999  999999988999999                   5677776532


Q ss_pred             cCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCC
Q 015178          272 DCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWS  351 (412)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~  351 (412)
                      ..             .+     ...   ...                         .......++.++|.+++++|++++
T Consensus        62 ~~-------------~~-----~~~---~~~-------------------------~~~~~~~~v~~im~~~~~~v~~~~   95 (160)
T 2o16_A           62 ES-------------SL-----QRS---AQG-------------------------DSLAFETPLFEVMHTDVTSVAPQA   95 (160)
T ss_dssp             HH-------------HC-----C-------------------------------------CCCBHHHHSCSCEEEBCTTS
T ss_pred             HH-------------hh-----ccc---ccc-------------------------cchhcccCHHHHhcCCCeEECCCC
Confidence            10             00     000   000                         000011235678999999999999


Q ss_pred             cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      ++.+++++|.+++++++||||+ |+++||||+.||++++.+.+.
T Consensus        96 ~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~~  138 (160)
T 2o16_A           96 GLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLE  138 (160)
T ss_dssp             BHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHhc
Confidence            9999999999999999999998 999999999999999887544

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.71  E-value=1.7e-17  Score=147.77  Aligned_cols=150  Identities=17%  Similarity=0.257  Sum_probs=103.6

Q ss_pred             CCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178          198 IVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR  275 (412)
Q Consensus       198 i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~  275 (412)
                      +|++  + ++++.+++++.+|+++|.++++  +++||+|++|+++|+||..||.++.....   .......+.....  .
T Consensus         9 im~~~~~-~~~v~~~~~l~~a~~~m~~~~~--~~~pVvd~~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~--~   80 (180)
T 3sl7_A            9 FMTPRQN-LHVVKPSTSVDDALELLVEKKV--TGLPVIDDNWTLVGVVSDYDLLALDSISG---RSQNDTNLFPDVD--S   80 (180)
T ss_dssp             HSEEGGG-CCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEEEEHHHHTCC------------------------
T ss_pred             hcCCCCC-ceeeCCCCcHHHHHHHHHHcCC--CeEEEECCCCeEEEEEEHHHHHhhhhhcc---ccCCccccccccc--c
Confidence            5766  6 9999999999999999999999  99999999999999976666554210000   0000000000000  0


Q ss_pred             CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHH
Q 015178          276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMA  355 (412)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~  355 (412)
                      ...             .+..+...+.                            .....++.++|++++++|++++++.+
T Consensus        81 ~~~-------------~~~~~~~~~~----------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~  119 (180)
T 3sl7_A           81 TWK-------------TFNELQKLIS----------------------------KTYGKVVGDLMTPSPLVVRDSTNLED  119 (180)
T ss_dssp             CCC-------------SHHHHHHHHH----------------------------TTTTCBHHHHSEESCCCEETTSBHHH
T ss_pred             hhh-------------hhHHHHHHHh----------------------------ccccccHHHHhCCCceEeCCCCcHHH
Confidence            000             0000000000                            01123467889999999999999999


Q ss_pred             HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      ++++|.+++++++||||++|+++||||++||++++.+....
T Consensus       120 a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~~  160 (180)
T 3sl7_A          120 AARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRN  160 (180)
T ss_dssp             HHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhhh
Confidence            99999999999999999889999999999999999876553

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.70  E-value=5.2e-17  Score=136.01  Aligned_cols=117  Identities=16%  Similarity=0.200  Sum_probs=97.6

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|+++ ++++.+++++.+|++.|.++++  +.+||+| +|+++|+                   +|..|++.+...+   
T Consensus         6 ~m~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd-~~~~~G~-------------------it~~dl~~~~~~~---   59 (125)
T 1pbj_A            6 VMVTD-VDTIDITASLEDVLRNYVENAK--GSSVVVK-EGVRVGI-------------------VTTWDVLEAIAEG---   59 (125)
T ss_dssp             HCBCS-CCEEETTCBHHHHHHHHHHHCC--CEEEEEE-TTEEEEE-------------------EEHHHHHHHHHHT---
T ss_pred             hcCCC-ceEECCCCcHHHHHHHHHHcCC--CEEEEEe-CCeeEEE-------------------EeHHHHHHHHhcC---
Confidence            57777 9999999999999999999999  9999999 8999999                   6677776532100   


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                               .            .              ....++.++|.++++++.+++++.+++
T Consensus        60 -------------------------~------------~--------------~~~~~v~~~m~~~~~~v~~~~~l~~~~   88 (125)
T 1pbj_A           60 -------------------------D------------D--------------LAEVKVWEVMERDLVTISPRATIKEAA   88 (125)
T ss_dssp             -------------------------C------------C--------------TTTSBHHHHCBCGGGEECTTSCHHHHH
T ss_pred             -------------------------C------------c--------------ccccCHHHHcCCCCeEECCCCCHHHHH
Confidence                                     0            0              001124567888999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ++|.+++++++||+|+ |+++|+||+.||++++.+
T Consensus        89 ~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           89 EKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             HHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             HHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            9999999999999998 999999999999998865

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.70  E-value=9.5e-17  Score=140.09  Aligned_cols=131  Identities=15%  Similarity=0.136  Sum_probs=104.1

Q ss_pred             CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178          190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDL  267 (412)
Q Consensus       190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl  267 (412)
                      ..++++  +|.+  + ++++.+++++.+|++.|.++++  +++||+|++|+++|+                   +|..|+
T Consensus        10 ~~~v~~--im~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~Gi-------------------vt~~dl   65 (157)
T 2emq_A           10 QMTVKP--FLIPADK-VAHVQPGNYLDHALLVLTKTGY--SAIPVLDTSYKLHGL-------------------ISMTMM   65 (157)
T ss_dssp             CCBSTT--TCEEGGG-SCCBCTTSBHHHHHHHHHHSSS--SEEEEECTTCCEEEE-------------------EEHHHH
T ss_pred             hCcHHh--hccCCcc-ceEECCCCcHHHHHHHHHHCCc--eEEEEEcCCCCEEEE-------------------eeHHHH
Confidence            445555  5775  6 8999999999999999999999  999999998999999                   667777


Q ss_pred             hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178          268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC  347 (412)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~  347 (412)
                      +.+...+....                                                 .......++.++|.++++++
T Consensus        66 ~~~~~~~~~~~-------------------------------------------------~~~~~~~~v~~~m~~~~~~v   96 (157)
T 2emq_A           66 MDAILGLERIE-------------------------------------------------FERLETMKVEEVMNRNIPRL   96 (157)
T ss_dssp             HHHSBCSSSBC-------------------------------------------------GGGGGTCBGGGTCBCCCCEE
T ss_pred             HHHHhcccccc-------------------------------------------------hHHhcCCcHHHHhCCCCcee
Confidence            66432100000                                                 00001123567888999999


Q ss_pred             CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      ++++++.+++++|.++++  +||||++|+++|+||++||++++.+...
T Consensus        97 ~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~  142 (157)
T 2emq_A           97 RLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH  142 (157)
T ss_dssp             ETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred             cCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence            999999999999999988  9999988999999999999999987654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.70  E-value=5.7e-17  Score=140.98  Aligned_cols=120  Identities=23%  Similarity=0.327  Sum_probs=99.9

Q ss_pred             CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178          190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDL  267 (412)
Q Consensus       190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl  267 (412)
                      ..++++  +|++  + ++++.+++++.+|++.|.++++  +.+||+|++|+++|+                   +|..|+
T Consensus        27 ~~~v~d--im~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl   82 (149)
T 3k2v_A           27 LLRVND--IMHTGDE-IPHVGLQATLRDALLEITRKNL--GMTAICDDDMNIIGI-------------------FTDGDL   82 (149)
T ss_dssp             TSBGGG--TSBCGGG-SCEECTTCBHHHHHHHHHHHTS--SEEEEECTTCBEEEE-------------------EEHHHH
T ss_pred             ccCHHH--HhcCCCC-CeEECCCCcHHHHHHHHHhCCC--cEEEEECCCCcEEEE-------------------ecHHHH
Confidence            346665  6887  7 9999999999999999999999  999999999999999                   667777


Q ss_pred             hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178          268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC  347 (412)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~  347 (412)
                      +..+..+.                                            +          ....++.++|.+++++|
T Consensus        83 ~~~~~~~~--------------------------------------------~----------~~~~~v~~~m~~~~~~v  108 (149)
T 3k2v_A           83 RRVFDTGV--------------------------------------------D----------MRDASIADVMTRGGIRI  108 (149)
T ss_dssp             HHHHCSSS--------------------------------------------C----------CTTCBHHHHSEESCCEE
T ss_pred             HHHHhcCC--------------------------------------------C----------cccCcHHHHcCCCCeEE
Confidence            76431100                                            0          00123467888899999


Q ss_pred             CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178          348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLR  388 (412)
Q Consensus       348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~  388 (412)
                      ++++++.+++++|.+++++++||+|++ +++|+||+.||++
T Consensus       109 ~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          109 RPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             CTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            999999999999999999999999986 9999999999985

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.70  E-value=9.6e-17  Score=140.74  Aligned_cols=137  Identities=15%  Similarity=0.164  Sum_probs=102.1

Q ss_pred             CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCce-eEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTS-VALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~-vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      ++++  +|+++ ++++.+++++.+|++.|.++++  ++ +||+|++ +++|+                   +|..|++.+
T Consensus        17 ~v~~--im~~~-~~~v~~~~tl~ea~~~m~~~~~--~~~~~Vvd~~-~~vGi-------------------vt~~dl~~~   71 (157)
T 1o50_A           17 DVCK--LISLK-PTVVEEDTPIEEIVDRILEDPV--TRTVYVARDN-KLVGM-------------------IPVMHLLKV   71 (157)
T ss_dssp             HHTT--SSCCC-CEEECTTCBHHHHHHHHHHSTT--CCEEEEEETT-EEEEE-------------------EEHHHHHHH
T ss_pred             cHhh--cccCC-CceECCCCCHHHHHHHHHhCCC--CccEEEEECC-EEEEE-------------------EEHHHHHHH
Confidence            4443  68888 9999999999999999999999  99 9999988 99999                   556666553


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW  350 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~  350 (412)
                      ...             .+ ...+... ..+..                        ........++.++|.+ +++++++
T Consensus        72 ~~~-------------~~-~~~~~~~-~~~~~------------------------~~~~~~~~~v~~im~~-~~~v~~~  111 (157)
T 1o50_A           72 SGF-------------HF-FGFIPKE-ELIRS------------------------SMKRLIAKNASEIMLD-PVYVHMD  111 (157)
T ss_dssp             HHH-------------HH-HCCCC--------------------------------CCCCCSSCBHHHHCBC-CCCBCTT
T ss_pred             Hhh-------------hH-HhhhccH-HHHHH------------------------HHHHHcCCcHHHHcCC-CeEECCC
Confidence            210             00 0000000 00000                        0001112346788988 9999999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +++.+++++|.+++++++||||++|+++|+||+.||++++.+.
T Consensus       112 ~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~  154 (157)
T 1o50_A          112 TPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  154 (157)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            9999999999999999999999889999999999999998764

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.70  E-value=1.8e-17  Score=140.79  Aligned_cols=123  Identities=20%  Similarity=0.270  Sum_probs=99.9

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh-
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA-  269 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~-  269 (412)
                      .++++  +|.++ ++++.+++++.+|++.|.++++  +++||+|++|+++|+                   ++.+|++. 
T Consensus         8 ~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~~   63 (133)
T 1y5h_A            8 TTARD--IMNAG-VTCVGEHETLTAAAQYMREHDI--GALPICGDDDRLHGM-------------------LTDRDIVIK   63 (133)
T ss_dssp             CCHHH--HSEET-CCCEETTSBHHHHHHHHHHHTC--SEEEEECGGGBEEEE-------------------EEHHHHHHT
T ss_pred             cCHHH--HhcCC-ceEeCCCCCHHHHHHHHHHhCC--CeEEEECCCCeEEEE-------------------EeHHHHHHH
Confidence            35554  57777 9999999999999999999999  999999988999999                   66777763 


Q ss_pred             hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178          270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP  349 (412)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~  349 (412)
                      ++..+.                                        .              ....++.++|.++++++++
T Consensus        64 ~~~~~~----------------------------------------~--------------~~~~~v~~~m~~~~~~v~~   89 (133)
T 1y5h_A           64 GLAAGL----------------------------------------D--------------PNTATAGELARDSIYYVDA   89 (133)
T ss_dssp             TGGGTC----------------------------------------C--------------TTTSBHHHHHTTCCCCEET
T ss_pred             HHhcCC----------------------------------------C--------------ccccCHHHHhcCCCEEECC
Confidence            221000                                        0              0011245678889999999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ++++.+++++|.+++++++||+|+ |+++|+||+.||++++.+
T Consensus        90 ~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           90 NASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             TCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC-
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            999999999999999999999998 899999999999987653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.70  E-value=9.4e-17  Score=144.78  Aligned_cols=125  Identities=18%  Similarity=0.252  Sum_probs=103.8

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      .++++  +|+++ ++++++++++.+|+++|.++++  +++||+|++|+++|+                   ++..|++.+
T Consensus         9 ~~v~~--im~~~-~~~v~~~~~l~ea~~~~~~~~~--~~~pVvd~~g~~vGi-------------------vt~~dl~~~   64 (184)
T 1pvm_A            9 MRVEK--IMNSN-FKTVNWNTTVFDAVKIMNENHL--YGLVVKDDNGNDVGL-------------------LSERSIIKR   64 (184)
T ss_dssp             CBGGG--TSBTT-CCEEETTCBHHHHHHHHHHHTC--CEEEEECTTSCEEEE-------------------EEHHHHHHH
T ss_pred             cCHHH--hcCCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------EeHHHHHHH
Confidence            45665  68888 9999999999999999999999  999999988999999                   667777653


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW  350 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~  350 (412)
                      ...                            ..            .             .....+++++|.++++++.++
T Consensus        65 ~~~----------------------------~~------------~-------------~~~~~~v~~im~~~~~~v~~~   91 (184)
T 1pvm_A           65 FIP----------------------------RN------------K-------------KPDEVPIRLVMRKPIPKVKSD   91 (184)
T ss_dssp             TGG----------------------------GC------------C-------------CGGGSBGGGTSBSSCCEEETT
T ss_pred             Hhh----------------------------cc------------c-------------CcccCCHHHHhCCCCcEECCC
Confidence            210                            00            0             000123567888899999999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      +++.+++++|.+++++++||||++|+++|+||+.||++++..
T Consensus        92 ~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           92 YDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             CBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             CCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            999999999999999999999998999999999999988776

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.69  E-value=7.4e-17  Score=145.01  Aligned_cols=124  Identities=18%  Similarity=0.202  Sum_probs=101.4

Q ss_pred             CCCcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178          190 NQPINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD  266 (412)
Q Consensus       190 ~~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D  266 (412)
                      ..++++  +|+  ++ ++++.+++++.+|+++|.++++  +++||+|++ |+++|+                   ++.+|
T Consensus        35 ~~~v~d--iM~~~~~-v~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~D   90 (173)
T 3ocm_A           35 ERSIRS--IMTPRTD-VSWVNIDDDAATIRQQLTAAPH--SFFPVCRGSLDEVVGI-------------------GRAKD   90 (173)
T ss_dssp             TSCSTT--TSEEGGG-CCCEETTSCHHHHHHHHHHSSC--SEEEEESSSTTSEEEE-------------------EEHHH
T ss_pred             CCCHHH--hCCcHHH-eEEEeCCCCHHHHHHHHHhCCC--CEEEEEeCCCCCEEEE-------------------EEHHH
Confidence            345554  676  35 9999999999999999999999  999999987 899999                   66788


Q ss_pred             hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178          267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL  346 (412)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt  346 (412)
                      ++....                            ...                             ..++.  |.+++++
T Consensus        91 l~~~~~----------------------------~~~-----------------------------~~~v~--~~~~~~~  111 (173)
T 3ocm_A           91 LVADLI----------------------------TEG-----------------------------RVRRN--RLRDPII  111 (173)
T ss_dssp             HHHHHH----------------------------HHS-----------------------------SCCGG--GSBCCCE
T ss_pred             HHHHHh----------------------------cCC-----------------------------cchhH--hcCCCeE
Confidence            776320                            000                             00123  4478899


Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      +.+++++.+++.+|.+++++++||||++|+++||||+.||++++...+..
T Consensus       112 v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~d  161 (173)
T 3ocm_A          112 VHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPD  161 (173)
T ss_dssp             ECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCC
T ss_pred             ECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCC
Confidence            99999999999999999999999999999999999999999999875543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.69  E-value=1.1e-16  Score=136.32  Aligned_cols=118  Identities=14%  Similarity=0.198  Sum_probs=97.8

Q ss_pred             CCC---CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh-cC
Q 015178          198 IVD---DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM-DC  273 (412)
Q Consensus       198 i~~---~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~-~~  273 (412)
                      +|+   ++ ++++++++++.+|++.|.++++  +++||+| +|+++|+                   +|..|++..+ ..
T Consensus        11 im~~~~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd-~~~~~Gi-------------------vt~~dl~~~~~~~   67 (135)
T 2rc3_A           11 LLQEKGHT-VVAIGPDDSVFNAMQKMAADNI--GALLVMK-DEKLVGI-------------------LTERDFSRKSYLL   67 (135)
T ss_dssp             HHHHHCCC-CCEECTTSBHHHHHHHHHHHTC--SEEEEEE-TTEEEEE-------------------EEHHHHHHHGGGS
T ss_pred             HHhcCCCC-cEEECCCCcHHHHHHHHHhcCC--CEEEEEE-CCEEEEE-------------------EehHHHHHHHHHc
Confidence            576   67 9999999999999999999999  9999998 7899999                   6677776421 10


Q ss_pred             CCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcH
Q 015178          274 GRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSL  353 (412)
Q Consensus       274 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl  353 (412)
                      +                  ..                                    ....++.++|.++++++++++++
T Consensus        68 ~------------------~~------------------------------------~~~~~v~~~m~~~~~~v~~~~~l   93 (135)
T 2rc3_A           68 D------------------KP------------------------------------VKDTQVKEIMTRQVAYVDLNNTN   93 (135)
T ss_dssp             S------------------SC------------------------------------GGGSBGGGTSBCSCCCBCTTCBH
T ss_pred             C------------------CC------------------------------------cccCCHHHhccCCCeEECCCCcH
Confidence            0                  00                                    00123567888999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       354 ~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      .+++++|.+++++++||+| +|+++|+||+.||++++.++
T Consensus        94 ~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           94 EDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             HHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             HHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence            9999999999999999999 69999999999999998754

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.68  E-value=3.4e-16  Score=147.42  Aligned_cols=201  Identities=12%  Similarity=0.157  Sum_probs=126.6

Q ss_pred             cCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178          102 LQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       102 l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~  180 (412)
                      +..+|+++|...   ++++++++++.+|+++|. ++++++||+++                +++++|+||..|+++++..
T Consensus         5 ~~~~v~~im~~~---~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~----------------~~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A            5 VKLKVEDLEMDK---IAPLAPEVSLKMAWNIMRDKNLKSIPVADG----------------NNHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             CCCBGGGSCCBC---CCCBCTTCBHHHHHHHHHHTTCSEEEEECT----------------TCBEEEEEEHHHHHHHHHC
T ss_pred             ccCcHHHhcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCEEEEEEEHHHHHHHHHH
Confidence            457899999855   899999999999999999 89999999863                3678999999999998754


Q ss_pred             ccCc----------------C---------------C-----CCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcC
Q 015178          181 CIGL----------------L---------------S-----PTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSH  224 (412)
Q Consensus       181 ~~~~----------------l---------------~-----~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~  224 (412)
                      ....                +               +     ......+.  ..+..+.++ +..+  -.++.+.+.+++
T Consensus        66 ~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~--~~~~~~~iv-Ivgd--r~~~~~~~i~~~  140 (245)
T 3l2b_A           66 IWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLK--EFISEGDIA-IAGD--RAEIQAELIELK  140 (245)
T ss_dssp             CCCTTHHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGG--GTCCTTCEE-EECS--CHHHHHHHHHTT
T ss_pred             hhhhhhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHH--hcCCCCCEE-EECC--CHHHHHHHHHcC
Confidence            2100                0               0     00001111  123444244 3333  377899999999


Q ss_pred             CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhh
Q 015178          225 INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDL  304 (412)
Q Consensus       225 i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  304 (412)
                      +  +++.+.+... +-..     +..          .....++--...   +...+ .          ..   ...    
T Consensus       141 ~--~~liit~~~~-~~~~-----v~~----------~a~~~~~~~i~t---~~d~~-~----------~~---~~~----  181 (245)
T 3l2b_A          141 V--SLLIVTGGHT-PSKE-----IIE----------LAKKNNITVITT---PHDSF-T----------AS---RLI----  181 (245)
T ss_dssp             C--SEEEECTTCC-CCHH-----HHH----------HHHHHTCEEEEC---SSCHH-H----------HH---HHG----
T ss_pred             C--CEEEECCCCC-CCHH-----HHH----------HHHHcCCeEEEe---CCChH-H----------HH---HHH----
Confidence            9  9888875321 1000     000          000000000000   00000 0          00   000    


Q ss_pred             cccCCCCCCCCCCCccccccccccccccCcccccccc-CCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEeh
Q 015178          305 EISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-SEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTF  383 (412)
Q Consensus       305 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~  383 (412)
                                                ....+++++|+ ++++++++++++.+++++|.+++++++||||++|+++||||+
T Consensus       182 --------------------------~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~  235 (245)
T 3l2b_A          182 --------------------------VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIAR  235 (245)
T ss_dssp             --------------------------GGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEC
T ss_pred             --------------------------hcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEH
Confidence                                      00123678899 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 015178          384 TGMLRVIR  391 (412)
Q Consensus       384 ~DIL~~l~  391 (412)
                      .|++++..
T Consensus       236 ~dll~~~~  243 (245)
T 3l2b_A          236 FHLISTHK  243 (245)
T ss_dssp             C-------
T ss_pred             HHhhchhh
Confidence            99998754

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.68  E-value=2.5e-16  Score=146.01  Aligned_cols=114  Identities=17%  Similarity=0.210  Sum_probs=98.3

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|.++ ++++.+++++.+|+++|.++++  +++||+|++|+++|+|                   |.+|++....     
T Consensus        18 ~~~~~-~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~l~Giv-------------------t~~dl~~~~~-----   70 (213)
T 1vr9_A           18 WVTQD-FPMVEESATVRECLHRMRQYQT--NECIVKDREGHFRGVV-------------------NKEDLLDLDL-----   70 (213)
T ss_dssp             GCBSC-SCEEETTCBHHHHHHHHHHTTS--SEEEEECTTSBEEEEE-------------------EGGGGTTSCT-----
T ss_pred             hhcCC-CeEECCCCcHHHHHHHHHHCCC--CEEEEEcCCCEEEEEE-------------------EHHHHHhhcC-----
Confidence            68888 9999999999999999999999  9999999889999995                   4555543210     


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                                                             ..++.++|+++++++++++++.+++
T Consensus        71 -------------------------------------------------------~~~v~~im~~~~~~v~~~~~l~~a~   95 (213)
T 1vr9_A           71 -------------------------------------------------------DSSVFNKVSLPDFFVHEEDNITHAL   95 (213)
T ss_dssp             -------------------------------------------------------TSBSGGGCBCTTCCEETTSBHHHHH
T ss_pred             -------------------------------------------------------CCcHHHHccCCCEEECCCCcHHHHH
Confidence                                                                   0113567888999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      ++|.+++++++||||++|+++||||.+||++++...
T Consensus        96 ~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~  131 (213)
T 1vr9_A           96 LLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  131 (213)
T ss_dssp             HHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             HHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence            999999999999999889999999999999988754

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.68  E-value=5.2e-16  Score=134.54  Aligned_cols=126  Identities=13%  Similarity=0.136  Sum_probs=109.3

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      -|...+|+|+|....+++++++ ++|+.+|++.|.+++++++||+|.+                     .++++|+|+..
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~~---------------------~~~lvGivt~~   76 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYE-SDSEEKILAILKEEGVTRYPVCRKN---------------------KDDILGFVHIR   76 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEET-TCCHHHHHHHHHHSCCSEEEEESSS---------------------TTSEEEEEEHH
T ss_pred             ccCCCCHHHccccHHHeEEECC-CCCHHHHHHHHHHCCCCEEEEEcCC---------------------CCcEEEEEEHH
Confidence            3668899999975448999999 9999999999999999999999853                     15899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||+..+.+..         ..+++++| ..   +.++.+++++.+|++.|. ++++++||+++                +
T Consensus        77 dl~~~~~~~~---------~~~v~~~m-~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----------------~  127 (148)
T 3lv9_A           77 DLYNQKINEN---------KIELEEIL-RD---IIYISENLTIDKALERIRKEKLQLAIVVDE----------------Y  127 (148)
T ss_dssp             HHHHHHHHHS---------CCCGGGTC-BC---CEEEETTSBHHHHHHHHHHHTCSEEEEECT----------------T
T ss_pred             HHHHHHhcCC---------CccHHHhc-CC---CeEECCCCCHHHHHHHHHhcCCeEEEEEeC----------------C
Confidence            9999876531         57799999 55   789999999999999999 89999999863                3


Q ss_pred             CCeeeeecHHHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~  180 (412)
                      ++.+|+||..||++.+..
T Consensus       128 g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A          128 GGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             SSEEEEEEHHHHHHHHHH
T ss_pred             CCEEEEEEHHHHHHHHhC
Confidence            678999999999998864

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.67  E-value=2.4e-16  Score=138.47  Aligned_cols=116  Identities=17%  Similarity=0.293  Sum_probs=94.2

Q ss_pred             CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC-cEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178          190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG-RLVGDISPFSFNSCDETVAAAMVTLSAGD  266 (412)
Q Consensus       190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g-~lvG~IS~~dl~~~~~~~~~~~~~ls~~D  266 (412)
                      ..++++  +|++  + ++++++++++.+|++.|.++++  +++||+|+++ +++|+                   ++.+|
T Consensus        37 ~~~v~d--iM~~~~~-~~~v~~~~~i~~a~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~d   92 (156)
T 3oi8_A           37 DLEVRD--AMITRSR-MNVLKENDSIERITAYVIDTAH--SRFPVIGEDKDEVLGI-------------------LHAKD   92 (156)
T ss_dssp             TCBGGG--TCEEGGG-CCCEETTCCHHHHHHHHHHHCC--SEEEEESSSTTCEEEE-------------------EEGGG
T ss_pred             CCCHhh--eeeeHHH-eEEECCCCCHHHHHHHHHHCCC--CEEEEEcCCCCcEEEE-------------------EEHHH
Confidence            345665  6875  5 9999999999999999999999  9999999885 99999                   45566


Q ss_pred             hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178          267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL  346 (412)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt  346 (412)
                      ++.....                  +          .                             ..++.++|+ ++++
T Consensus        93 l~~~~~~------------------~----------~-----------------------------~~~v~~im~-~~~~  114 (156)
T 3oi8_A           93 LLKYMFN------------------P----------E-----------------------------QFHLKSILR-PAVF  114 (156)
T ss_dssp             GGGGSSC------------------G----------G-----------------------------GCCHHHHCB-CCCE
T ss_pred             HHHHHHc------------------C----------C-----------------------------cccHHHHcC-CCEE
Confidence            5543210                  0          0                             011345675 4899


Q ss_pred             eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHH
Q 015178          347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGML  387 (412)
Q Consensus       347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL  387 (412)
                      +++++++.+++++|.+++++++||||++|+++||||+.||+
T Consensus       115 v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          115 VPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             EETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             ECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            99999999999999999999999999999999999999986

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.67  E-value=1.8e-16  Score=134.71  Aligned_cols=126  Identities=16%  Similarity=0.167  Sum_probs=105.4

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      .|.+.+|+|+|...++++++++ ++|+.+|++.|.+++++++||+|.+                     .++++|+|+..
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~~---------------------~~~~~Givt~~   59 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDA-TMTINEFLDKHKDTPFSRPLVYSEQ---------------------KDNIIGFVHRL   59 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEET-TSBHHHHHHHTTTCSCSCCEEESSS---------------------TTCEEEECCHH
T ss_pred             CcCcCCHhhCCCcHHHEEEEcC-CCCHHHHHHHHHhCCCCEEEEEeCC---------------------CCcEEEEEEHH
Confidence            4678999999976567899999 9999999999999999999999953                     26899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||+..+.+..        ...+++++|. .   +.++.+++++.+|++.|. ++++++||+++                +
T Consensus        60 dl~~~~~~~~--------~~~~v~~~m~-~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~----------------~  111 (130)
T 3i8n_A           60 ELFKMQQSGS--------GQKQLGAVMR-P---IQVVLNNTALPKVFDQMMTHRLQLALVVDE----------------Y  111 (130)
T ss_dssp             HHHHHHHTTT--------TTSBHHHHSE-E---CCEEETTSCHHHHHHHHHHHTCCEEEEECT----------------T
T ss_pred             HHHHHHhcCC--------CcCCHHHHhc-C---CcCcCCCCcHHHHHHHHHHcCCeEEEEEcC----------------C
Confidence            9999876421        1467999994 2   689999999999999999 89999999863                3


Q ss_pred             CCeeeeecHHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFL  179 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~  179 (412)
                      ++++|+||..||++.+.
T Consensus       112 g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A          112 GTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             SCEEEEEEHHHHHHHHH
T ss_pred             CCEEEEEEHHHHHHHHc
Confidence            67899999999999875

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.67  E-value=2.3e-16  Score=136.81  Aligned_cols=135  Identities=16%  Similarity=0.152  Sum_probs=112.1

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      .|.+++|+|+|..+.+++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+||..
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~-~~~l~~a~~~~~~~~~~~~pVvd~----------------------~~~~~Givt~~   67 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQI-GNGLEHALLVLVKSGYSAIPVLDP----------------------MYKLHGLISTA   67 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEEEHH
T ss_pred             hhhcCChhhcccCCCceEEECC-CCcHHHHHHHHHHcCCcEEEEECC----------------------CCCEEEEEEHH
Confidence            4678999999975457999999 999999999999999999999995                      36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||+.++...... ........+|+++|...   ++++.+++++.+|++.|. +++  +||+++                +
T Consensus        68 dl~~~~~~~~~~-~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~----------------~  125 (150)
T 3lqn_A           68 MILDGILGLERI-EFERLEEMKVEQVMKQD---IPVLKLEDSFAKALEMTIDHPF--ICAVNE----------------D  125 (150)
T ss_dssp             HHHHHTBCSSSB-CGGGGGGCBGGGTCBSS---CCEEETTCBHHHHHHHHHHCSE--EEEECT----------------T
T ss_pred             HHHHHHHhhccc-chhHHhcCCHHHHhcCC---CceeCCCCCHHHHHHHHHhCCE--EEEECC----------------C
Confidence            999998643221 11233467899999855   889999999999999999 776  888853                3


Q ss_pred             CCeeeeecHHHHHHHHHHccC
Q 015178          163 DSEYCWLTQEDLIRYFLNCIG  183 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~~~  183 (412)
                      ++.+|+||+.||++++.+...
T Consensus       126 g~~~Giit~~dil~~l~~~~~  146 (150)
T 3lqn_A          126 GYFEGILTRRAILKLLNKKVR  146 (150)
T ss_dssp             CBEEEEEEHHHHHHHHHHHC-
T ss_pred             CcEEEEEEHHHHHHHHHHHhH
Confidence            679999999999999987543

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.67  E-value=2.3e-16  Score=134.45  Aligned_cols=125  Identities=9%  Similarity=0.109  Sum_probs=105.5

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      +.+|+|+|...++++++++ ++|+.+|++.|.+++++++||++.+                     +++++|+|+..||+
T Consensus         1 ~~~v~~iM~~~~~~~~v~~-~~~v~~a~~~m~~~~~~~~pVv~~~---------------------~~~lvGivt~~dl~   58 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDI-NDDWKSIVRQLTHSPHGRIVLYRDS---------------------LDDAISMLRVREAY   58 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEET-TSCHHHHHHHHHTCSSSEEEEESSS---------------------GGGEEEEEEHHHHH
T ss_pred             CcCHHHhCccHHHEEEEcC-CCCHHHHHHHHHHCCCCeEEEEcCC---------------------CCcEEEEEEHHHHH
Confidence            3579999975557999999 9999999999999999999999742                     36899999999999


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      +.+.+....      ...+++++|. .   ++++.+++++.+|++.|. ++++++||+++                ++++
T Consensus        59 ~~~~~~~~~------~~~~v~~~m~-~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~----------------~g~l  112 (130)
T 3hf7_A           59 RLMTEKKEF------TKEIMLRAAD-E---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDE----------------YGDI  112 (130)
T ss_dssp             HHHTSSSCC------CHHHHHHHSB-C---CCEEETTCBHHHHHHHHHHHCCCEEEEECT----------------TSCE
T ss_pred             HHHhccCcc------chhhHHHhcc-C---CeEeCCCCcHHHHHHHHHhcCCeEEEEEcC----------------CCCE
Confidence            987653211      1356899993 3   689999999999999999 89999999863                3678


Q ss_pred             eeeecHHHHHHHHH
Q 015178          166 YCWLTQEDLIRYFL  179 (412)
Q Consensus       166 v~iITq~DIv~~l~  179 (412)
                      +||||..||++.+.
T Consensus       113 vGiit~~Dil~~l~  126 (130)
T 3hf7_A          113 QGLVTVEDILEEIV  126 (130)
T ss_dssp             EEEEEHHHHHHHHH
T ss_pred             EEEeeHHHHHHHHh
Confidence            99999999999875

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.66  E-value=6e-16  Score=135.60  Aligned_cols=129  Identities=14%  Similarity=0.199  Sum_probs=98.9

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC--CCcEeeeecCCccCCcchhHHHhhhhcCHhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE--EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLM  268 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~  268 (412)
                      .++++  +|+++ ++++++++++.+|+++|.++++  +++||+|+  +|+++|+                   +|..|++
T Consensus        13 ~~v~d--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~pVvd~~~~~~~~Gi-------------------vt~~dl~   68 (164)
T 2pfi_A           13 VRVEH--FMNHS-ITTLAKDTPLEEVVKVVTSTDV--TEYPLVESTESQILVGI-------------------VQRAQLV   68 (164)
T ss_dssp             CBHHH--HCBCC-CCCEETTCBHHHHHHHHHTCCC--SEEEEESCTTTCBEEEE-------------------EEHHHHH
T ss_pred             CCHHH--HcCCC-CeEECCCCcHHHHHHHHHhCCC--CceeEEecCCCCEEEEE-------------------EEHHHHH
Confidence            44554  68888 9999999999999999999999  99999996  7899999                   5677776


Q ss_pred             hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC-----
Q 015178          269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE-----  343 (412)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~-----  343 (412)
                      .+...+.+                  ..   ..              .               ...++.++|..+     
T Consensus        69 ~~~~~~~~------------------~~---~~--------------~---------------~~~~v~~~m~~~~~~~~   98 (164)
T 2pfi_A           69 QALQAEPP------------------SR---AP--------------G---------------HQQCLQDILARGCPTEP   98 (164)
T ss_dssp             HHHHC------------------------------------------C---------------CCCBHHHHHHTTCCCBC
T ss_pred             HHHHhhcc------------------cc---CC--------------c---------------ccchhhhhhcccccccC
Confidence            54311000                  00   00              0               000122334333     


Q ss_pred             -ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178          344 -AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL  394 (412)
Q Consensus       344 -vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~  394 (412)
                       +++|++++++.+++++|.+++++++|||| +|+++||||++||++++.+..
T Consensus        99 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A           99 VTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             CCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHH
T ss_pred             CceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhh
Confidence             78999999999999999999999999999 689999999999999998754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.66  E-value=5.4e-16  Score=136.38  Aligned_cols=131  Identities=13%  Similarity=0.144  Sum_probs=110.3

Q ss_pred             cccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178            2 AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC   81 (412)
Q Consensus         2 ~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt   81 (412)
                      ..+|..++|+|+|.  + .+++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+
T Consensus        11 ~~~l~~~~v~~im~--~-~~~v~~-~~~~~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Givt   64 (159)
T 3fv6_A           11 ADKLKKLQVKDFQS--I-PVVIHE-NVSVYDAICTMFLEDVGTLFVVDR----------------------DAVLVGVLS   64 (159)
T ss_dssp             HHHHTTCBGGGSCB--C-CCEEET-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEE
T ss_pred             HHHHhhCCHHHHcC--C-CEEECC-CCcHHHHHHHHHHCCCCEEEEEcC----------------------CCcEEEEEe
Confidence            35678899999996  3 459999 999999999999999999999995                      368999999


Q ss_pred             hHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178           82 MVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF  160 (412)
Q Consensus        82 ~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~  160 (412)
                      ..||+..+....      .....+|+++|... .++++++++++|.+|++.|. ++++++||+++               
T Consensus        65 ~~dl~~~~~~~~------~~~~~~v~~~m~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---------------  122 (159)
T 3fv6_A           65 RKDLLRASIGQQ------ELTSVPVHIIMTRM-PNITVCRREDYVMDIAKHLIEKQIDALPVIKD---------------  122 (159)
T ss_dssp             HHHHHHHHTSCS------CTTTCBGGGTSEET-TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE---------------
T ss_pred             HHHHHHHhhccC------cccCcCHHHHHcCC-CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC---------------
Confidence            999999875422      12357899999751 13889999999999999999 99999999864               


Q ss_pred             CCC---CeeeeecHHHHHHHHHHc
Q 015178          161 HND---SEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       161 ~~~---~~v~iITq~DIv~~l~~~  181 (412)
                       ++   +++|+||..||++++.+-
T Consensus       123 -~g~~~~~vGiit~~dil~~l~~~  145 (159)
T 3fv6_A          123 -TDKGFEVIGRVTKTNMTKILVSL  145 (159)
T ss_dssp             -CSSSEEEEEEEEHHHHHHHHHHH
T ss_pred             -CCcceeEEEEEEHHHHHHHHHHH
Confidence             24   789999999999999873

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.66  E-value=1e-15  Score=129.81  Aligned_cols=127  Identities=12%  Similarity=0.149  Sum_probs=108.8

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      |.+.+++++|.  ++++++++ ++|+.+|++.|.++++.++||+| +                      ++++|+|+..|
T Consensus         1 l~~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd-~----------------------~~~~Givt~~d   54 (133)
T 2ef7_A            1 MEEEIVKEYMK--TQVISVTK-DAKLNDIAKVMTEKNIGSVIVVD-G----------------------NKPVGIITERD   54 (133)
T ss_dssp             CCCCBGGGTSB--CSCCEEET-TCBHHHHHHHHHHHTCSEEEEEE-T----------------------TEEEEEEEHHH
T ss_pred             CCcccHHHhcc--CCCEEECC-CCcHHHHHHHHHhcCCCEEEEEE-C----------------------CEEEEEEcHHH
Confidence            46789999995  56899999 99999999999999999999999 3                      58999999999


Q ss_pred             HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178           85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND  163 (412)
Q Consensus        85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~  163 (412)
                      ++.++....       ....+++++|...   +.++++++++.+|++.|. ++++++||+++                ++
T Consensus        55 l~~~~~~~~-------~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----------------~g  108 (133)
T 2ef7_A           55 IVKAIGKGK-------SLETKAEEFMTAS---LITIREDSPITGALALMRQFNIRHLPVVDD----------------KG  108 (133)
T ss_dssp             HHHHHHTTC-------CTTCBGGGTSEEC---CCCEETTSBHHHHHHHHHHHTCSEEEEECT----------------TS
T ss_pred             HHHHHhcCC-------CcccCHHHHcCCC---CEEECCCCCHHHHHHHHHHcCCCEEEEECC----------------CC
Confidence            998876521       1247899999754   889999999999999999 89999999863                36


Q ss_pred             CeeeeecHHHHHHHHHHccC
Q 015178          164 SEYCWLTQEDLIRYFLNCIG  183 (412)
Q Consensus       164 ~~v~iITq~DIv~~l~~~~~  183 (412)
                      +.+|+||..||++++.+...
T Consensus       109 ~~~Giit~~dll~~~~~~~~  128 (133)
T 2ef7_A          109 NLKGIISIRDITRAIDDMFE  128 (133)
T ss_dssp             CEEEEEEHHHHHHHHHHHC-
T ss_pred             eEEEEEEHHHHHHHHHHHHH
Confidence            78999999999999987544

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.65  E-value=3.1e-16  Score=137.13  Aligned_cols=118  Identities=14%  Similarity=0.236  Sum_probs=97.2

Q ss_pred             CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178          201 DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL  280 (412)
Q Consensus       201 ~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~  280 (412)
                      ++ ++++.+++++.+|++.|.++++  +.+||+| +|+++|+                   +|..|++..+..       
T Consensus        21 ~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~V~~-~~~~~Gi-------------------vt~~dl~~~~~~-------   70 (157)
T 4fry_A           21 RT-IYTVTKNDFVYDAIKLMAEKGI--GALLVVD-GDDIAGI-------------------VTERDYARKVVL-------   70 (157)
T ss_dssp             CC-CCEEETTSBHHHHHHHHHHHTC--SEEEEES-SSSEEEE-------------------EEHHHHHHHSGG-------
T ss_pred             CC-CeEECCCCcHHHHHHHHHHcCC--CEEEEee-CCEEEEE-------------------EEHHHHHHHHHh-------
Confidence            44 8999999999999999999999  9999965 7899999                   667777664210       


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178          281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA  360 (412)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m  360 (412)
                                           ..            .             .....++.++|.++++++.+++++.+++++|
T Consensus        71 ---------------------~~------------~-------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m  104 (157)
T 4fry_A           71 ---------------------QE------------R-------------SSKATRVEEIMTAKVRYVEPSQSTDECMALM  104 (157)
T ss_dssp             ---------------------GT------------C-------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHH
T ss_pred             ---------------------cc------------C-------------CccccCHHHHcCCCCcEECCCCcHHHHHHHH
Confidence                                 00            0             0001235678889999999999999999999


Q ss_pred             HHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          361 LARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      .+++++++||+| +|+++|+||+.||++++.....
T Consensus       105 ~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~  138 (157)
T 4fry_A          105 TEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQ  138 (157)
T ss_dssp             HHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC
T ss_pred             HHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHH
Confidence            999999999999 6899999999999999987544

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.65  E-value=7.9e-16  Score=137.47  Aligned_cols=126  Identities=15%  Similarity=0.137  Sum_probs=106.3

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      -|...+|+|+|...++++++++ ++|+.+|++.|.+++++++||+|.+                     .++++|+|+..
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~-~~~v~~a~~~m~~~~~~~~pVvd~~---------------------~~~lvGivt~~   95 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDL-NLPLDANLRTVMQSPHSRFPVCRNN---------------------VDDMVGIISAK   95 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEET-TSCHHHHHHHHHTCCCSEEEEESSS---------------------TTSEEEEEEHH
T ss_pred             ccCCCCHHHhCccHHHeEEEcC-CCCHHHHHHHHHhCCCCEEEEEeCC---------------------CCeEEEEEEHH
Confidence            3567889999975567999999 9999999999999999999999852                     16899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||+..+.+..         ..+|+++| ..   ++++.+++++.+|++.|. ++++++||+++                +
T Consensus        96 dl~~~~~~~~---------~~~v~~im-~~---~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----------------~  146 (172)
T 3lhh_A           96 QLLSESIAGE---------RLELVDLV-KN---CNFVPNSLSGMELLEHFRTTGSQMVFVVDE----------------Y  146 (172)
T ss_dssp             HHHHHHHTTC---------CCCGGGGC-BC---CEEEETTCCHHHHHHHHHHHTCSEEEEECT----------------T
T ss_pred             HHHHHHhhcC---------cccHHHHh-cC---CeEeCCCCCHHHHHHHHHHcCCeEEEEEeC----------------C
Confidence            9999876421         46799999 55   789999999999999999 89999999863                3


Q ss_pred             CCeeeeecHHHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~  180 (412)
                      ++++||||..||++.+..
T Consensus       147 g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          147 GDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             SCEEEEEEHHHHHHHHHT
T ss_pred             CCEEEEeeHHHHHHHHhC
Confidence            679999999999998864

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.65  E-value=1.2e-15  Score=129.96  Aligned_cols=129  Identities=19%  Similarity=0.278  Sum_probs=108.0

Q ss_pred             CcccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEE
Q 015178            1 MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKV   80 (412)
Q Consensus         1 ~~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGiv   80 (412)
                      |-.+|.+.+++++|.  ++++++++ ++|+.+|++.|.++++.++||+|+                      +++++|+|
T Consensus         1 ~~~~l~~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Giv   55 (138)
T 2p9m_A            1 MIDTLKNIKVKDVMT--KNVITAKR-HEGVVEAFEKMLKYKISSLPVIDD----------------------ENKVIGIV   55 (138)
T ss_dssp             ----CTTCBGGGTSB--CSCCCEET-TSBHHHHHHHHHHHTCCEEEEECT----------------------TCBEEEEE
T ss_pred             CccccccCCHHHhhc--CCceEECC-CCcHHHHHHHHHHCCCcEEEEECC----------------------CCeEEEEE
Confidence            456889999999995  57899999 999999999999999999999995                      36899999


Q ss_pred             ehHHH-HHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cC-----CceeeecCCCCCCCCCC
Q 015178           81 CMVDI-ISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GG-----VQNLVIPLPAGTKLQPK  153 (412)
Q Consensus        81 t~~Di-l~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~g-----v~Rl~V~~~~~~~~~~~  153 (412)
                      +..|+ +.++.+..       ....+++++|...   +.++++++++.+|++.|. ++     ++++||+++        
T Consensus        56 t~~dl~~~~~~~~~-------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~--------  117 (138)
T 2p9m_A           56 TTTDIGYNLIRDKY-------TLETTIGDVMTKD---VITIHEDASILEAIKKMDISGKKEEIINQLPVVDK--------  117 (138)
T ss_dssp             EHHHHHHHHTTTCC-------CSSCBHHHHSCSS---CCCEETTSBHHHHHHHHTCC-----CCCEEEEECT--------
T ss_pred             EHHHHHHHHHhhcc-------cCCcCHHHHhCCC---cEEECCCCCHHHHHHHHHhcCCccccccEEEEECC--------
Confidence            99999 88776421       2357899999755   889999999999999999 88     999999863        


Q ss_pred             CCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178          154 PSLKSTFHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       154 ~~~~~~~~~~~~v~iITq~DIv~~l~~  180 (412)
                              +++.+|+||..|+++++.+
T Consensus       118 --------~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A          118 --------NNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             --------TSBEEEEEEHHHHHHHHHH
T ss_pred             --------CCeEEEEEEHHHHHHHHHh
Confidence                    3678999999999998865

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.64  E-value=6.2e-16  Score=135.11  Aligned_cols=125  Identities=16%  Similarity=0.185  Sum_probs=108.1

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEe-ecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVW-SCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      |...+|+++|....+++++++ ++|+.+|++.|.+++++++||+ +.+                     .++++|+|+..
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVv~d~~---------------------~~~lvGivt~~   74 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDV-DETIADALLLYLEEQYSRFPVTADND---------------------KDKIIGYAYNY   74 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEET-TSBHHHHHHHHHHHCCSEEEEEETTE---------------------EEEEEEEEEHH
T ss_pred             cCCCEeeeEecchhheEEEcC-CCCHHHHHHHHHhCCCCEEEEEECCC---------------------CCcEEEEEEHH
Confidence            557889999964347999999 9999999999999999999999 532                     36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||+.++....         ..+|+++| ..   ++++.+++++.+|++.|. ++++++||+++                +
T Consensus        75 dl~~~~~~~~---------~~~v~~~m-~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----------------~  125 (153)
T 3oco_A           75 DIVRQARIDD---------KAKISTIM-RD---IVSVPENMKVPDVMEEMSAHRVPMAIVIDE----------------Y  125 (153)
T ss_dssp             HHHHHHHHHT---------TSBGGGTC-BC---CEEEETTSBHHHHHHHHHHTTCSCEEEECT----------------T
T ss_pred             HHHhHHhcCC---------CCcHHHHh-CC---CeEECCCCCHHHHHHHHHHcCCcEEEEEeC----------------C
Confidence            9999876521         46799999 55   799999999999999999 89999999863                3


Q ss_pred             CCeeeeecHHHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~  180 (412)
                      |+++|+||..||++.+..
T Consensus       126 g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A          126 GGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             SCEEEEECHHHHHHHHHC
T ss_pred             CCEEEEeeHHHHHHHHhc
Confidence            679999999999998864

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.64  E-value=5.6e-16  Score=138.63  Aligned_cols=151  Identities=14%  Similarity=0.157  Sum_probs=103.8

Q ss_pred             CCcccccCCCCCc---EEEE--eCCCcHHHHHHHHHhcCCCCceeEEE--cCCCcEeeeecCCccCCcchhHHHhhhhcC
Q 015178          191 QPINSLNIVDDAG---IFAI--QYDEPAAFAIPLIAQSHINQTSVALV--DEEGRLVGDISPFSFNSCDETVAAAMVTLS  263 (412)
Q Consensus       191 ~~i~~L~i~~~~~---v~tv--~~~~~~~~a~~~m~~~~i~~s~vpVV--d~~g~lvG~IS~~dl~~~~~~~~~~~~~ls  263 (412)
                      .++++  +|++..   ++++  .+++++.+|+++|.++++  +++||+  |++|+++|+                   +|
T Consensus        11 ~~v~d--im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~--~~~pVv~~d~~~~lvGi-------------------it   67 (185)
T 2j9l_A           11 TLAMD--VMKPRRNDPLLTVLTQDSMTVEDVETIISETTY--SGFPVVVSRESQRLVGF-------------------VL   67 (185)
T ss_dssp             CBHHH--HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCC--SEEEEESCTTTCBEEEE-------------------EE
T ss_pred             CcHHH--HhcccccCceEEEecCCCccHHHHHHHHHhcCC--CceeEEEECCCCeEEEE-------------------EE
Confidence            44554  566531   6778  999999999999999999  999999  788999999                   55


Q ss_pred             HhhhhhhhcCCCCCchhHHHHHHHhhhhhh-hHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC
Q 015178          264 AGDLMAYMDCGRPPKDLVRLVKQRLEEKSM-VGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS  342 (412)
Q Consensus       264 ~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~  342 (412)
                      ..|++.+...+            .....++ ......+..        .     . .+     .........++.++|.+
T Consensus        68 ~~dl~~~~~~~------------~~~~~~~~~~~~~~~~~--------~-----~-~~-----~~~~~~~~~~v~~im~~  116 (185)
T 2j9l_A           68 RRDLIISIENA------------RKKQDGVVSTSIIYFTE--------H-----S-PP-----LPPYTPPTLKLRNILDL  116 (185)
T ss_dssp             HHHHHHHHHHH------------HTSCSCCCTTCEEECSS--------S-----C-CC-----CCTTCCCCEECGGGEES
T ss_pred             HHHHHHHHHhh------------cccCCCccccceeeccc--------C-----C-cc-----cccccccCccHHHhhCc
Confidence            66666532100            0000000 000000000        0     0 00     00011123456788999


Q ss_pred             CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       343 ~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      ++++|++++++.+++++|.+++++++||+| +|+++||||+.||++++.+....
T Consensus       117 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~~~~  169 (185)
T 2j9l_A          117 SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQ  169 (185)
T ss_dssp             SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred             CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999 78999999999999999876543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.64  E-value=1.5e-15  Score=142.89  Aligned_cols=200  Identities=16%  Similarity=0.136  Sum_probs=127.7

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      ..+|+|+|.  ++++++++ ++++.+|++.|.+++++++||+|.                      +++++||+|..||+
T Consensus         6 ~~~v~~im~--~~~~~v~~-~~~~~~a~~~m~~~~~~~lpVvd~----------------------~~~l~Giit~~di~   60 (245)
T 3l2b_A            6 KLKVEDLEM--DKIAPLAP-EVSLKMAWNIMRDKNLKSIPVADG----------------------NNHLLGMLSTSNIT   60 (245)
T ss_dssp             CCBGGGSCC--BCCCCBCT-TCBHHHHHHHHHHTTCSEEEEECT----------------------TCBEEEEEEHHHHH
T ss_pred             cCcHHHhcC--CCCcEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCEEEEEEEHHHHH
Confidence            568999995  56899999 999999999999999999999995                      36899999999999


Q ss_pred             HHhhhcccCCCcccccC--------------------------------CchhhhccCC-CCceEecCCCCcHHHHHHHH
Q 015178           87 SFLCKEENLLNPESALQ--------------------------------DPVSVLLPEA-SGVIRHLEPSASLLEAVDLL  133 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~--------------------------------~~V~dvm~~~-~~~~~tV~~~~sL~~ai~lm  133 (412)
                      +++...... +......                                .+...++..- .+.++.+  +. -.++.+.+
T Consensus        61 ~~~~~~~~~-~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIv--gd-r~~~~~~~  136 (245)
T 3l2b_A           61 ATYMDIWDS-NILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIA--GD-RAEIQAEL  136 (245)
T ss_dssp             HHHHCCCCT-THHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEE--CS-CHHHHHHH
T ss_pred             HHHHHhhhh-hhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEE--CC-CHHHHHHH
Confidence            987532100 0000000                                0111111111 2333333  11 25666666


Q ss_pred             h-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCC-CCcEEEEeCCC
Q 015178          134 L-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVD-DAGIFAIQYDE  211 (412)
Q Consensus       134 ~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~-~~~v~tv~~~~  211 (412)
                      . +|+.-+++........    .......+.....+.|..|.........      ...++++  +|+ ++ ++++++++
T Consensus       137 i~~~~~~liit~~~~~~~----~v~~~a~~~~~~~i~t~~d~~~~~~~~~------~~~~v~~--im~~~~-~~~~~~~~  203 (245)
T 3l2b_A          137 IELKVSLLIVTGGHTPSK----EIIELAKKNNITVITTPHDSFTASRLIV------QSLPVDY--VMTKDN-LVAVSTDD  203 (245)
T ss_dssp             HHTTCSEEEECTTCCCCH----HHHHHHHHHTCEEEECSSCHHHHHHHGG------GGSBHHH--HSBCTT-CCCEETTS
T ss_pred             HHcCCCEEEECCCCCCCH----HHHHHHHHcCCeEEEeCCChHHHHHHHh------cCCceee--EecCCc-cEEECCCC
Confidence            6 8888776653211100    0000001122233666666555432211      1234555  688 77 99999999


Q ss_pred             cHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178          212 PAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS  250 (412)
Q Consensus       212 ~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~  250 (412)
                      ++.+|+++|.++++  +.+||||++|+++|+||..||.+
T Consensus       204 ~~~~~~~~m~~~~~--~~~pVvd~~~~~~Giit~~dll~  240 (245)
T 3l2b_A          204 LVEDVKVTMSETRY--SNYPVIDENNKVVGSIARFHLIS  240 (245)
T ss_dssp             BHHHHHHHHHHHCC--SEEEEECTTCBEEEEEECC----
T ss_pred             cHHHHHHHHHhcCC--ceEEEEcCCCeEEEEEEHHHhhc
Confidence            99999999999999  99999999999999977666654

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.64  E-value=5.2e-16  Score=131.21  Aligned_cols=123  Identities=15%  Similarity=0.139  Sum_probs=103.6

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      ..+|+|+|....+++++++ ++|+.+|++.|.+++++++||+|.+                     .++++|+|+..||+
T Consensus         2 ~~~v~diM~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~~---------------------~~~~vGivt~~dl~   59 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKR-NQTLDECLDVIIESAHSRFPVISED---------------------KDHIEGILMAKDLL   59 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEET-TCCHHHHHHHHHHHCCSEEEEESSS---------------------TTCEEEEEEGGGGG
T ss_pred             CcCHHHhcccHHHeEEEcC-CCCHHHHHHHHHhCCCCEEEEEcCC---------------------CCcEEEEEEHHHHH
Confidence            5689999964445999999 9999999999999999999999953                     25899999999999


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      +.+....        ...+++++|..    +.++.+++++.+|++.|. ++++++||+++                ++++
T Consensus        60 ~~~~~~~--------~~~~v~~~m~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~g~~  111 (127)
T 3nqr_A           60 PFMRSDA--------EAFSMDKVLRT----AVVVPESKRVDRMLKEFRSQRYHMAIVIDE----------------FGGV  111 (127)
T ss_dssp             GGGSTTC--------CCCCHHHHCBC----CCEEETTCBHHHHHHHHHHTTCCEEEEECT----------------TSCE
T ss_pred             HHHhccC--------CCCCHHHHcCC----CeEECCCCcHHHHHHHHHhcCCeEEEEEeC----------------CCCE
Confidence            8775321        24679999942    578999999999999999 89999999863                3679


Q ss_pred             eeeecHHHHHHHHH
Q 015178          166 YCWLTQEDLIRYFL  179 (412)
Q Consensus       166 v~iITq~DIv~~l~  179 (412)
                      +|+||..||++.+.
T Consensus       112 ~Giit~~dll~~l~  125 (127)
T 3nqr_A          112 SGLVTIEDILELIV  125 (127)
T ss_dssp             EEEEEHHHHHHHC-
T ss_pred             EEEEEHHHHHHHHh
Confidence            99999999999864

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=8.7e-16  Score=135.85  Aligned_cols=129  Identities=12%  Similarity=0.171  Sum_probs=111.2

Q ss_pred             cccccchhccccCC-CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178            4 RLLSVGVSDLCIGK-PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM   82 (412)
Q Consensus         4 ~~~~~~v~dl~~~~-~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~   82 (412)
                      .|..++|+|+|..+ ++++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+.
T Consensus        20 ~l~~~~v~dim~~~~~~~~~v~~-~~~l~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Givt~   76 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGRDVVTVGP-DVSIGEAAGTLHAHKIGAVVVTDA----------------------DGVVLGIFTE   76 (165)
T ss_dssp             SSSSCBHHHHHHHHCSCCCEECT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEEH
T ss_pred             hhhhcCHHHHhccCCCCCeEECC-CCCHHHHHHHHHHcCCCEEEEEcC----------------------CCeEEEEEEH
Confidence            57789999999743 46999999 999999999999999999999995                      3689999999


Q ss_pred             HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccC
Q 015178           83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFH  161 (412)
Q Consensus        83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~  161 (412)
                      .||++.+....     ......+|+++|...   ++++++++++.+|++.|. ++++++||+++                
T Consensus        77 ~dl~~~~~~~~-----~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------  132 (165)
T 3fhm_A           77 RDLVKAVAGQG-----AASLQQSVSVAMTKN---VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN----------------  132 (165)
T ss_dssp             HHHHHHHHHHG-----GGGGTSBGGGTSBSS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEET----------------
T ss_pred             HHHHHHHHhcC-----CccccCCHHHHhcCC---CeEECCCCcHHHHHHHHHHcCCCEEEEEEC----------------
Confidence            99999887532     123357899999855   889999999999999999 89999999853                


Q ss_pred             CCCeeeeecHHHHHHHHHH
Q 015178          162 NDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       162 ~~~~v~iITq~DIv~~l~~  180 (412)
                       ++++|+||..||++++.+
T Consensus       133 -g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A          133 -GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             -TEEEEEEEHHHHHHHTTC
T ss_pred             -CEEEEEEEHHHHHHHHHH
Confidence             578999999999999764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.63  E-value=1.3e-15  Score=129.22  Aligned_cols=123  Identities=13%  Similarity=0.159  Sum_probs=105.0

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI   85 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di   85 (412)
                      .+.+|+|+|...++++++++ ++|+.+|++.|.+++++++||++.+                     .++++|+|+..||
T Consensus         3 ~~~~v~diM~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~~---------------------~~~~~Givt~~dl   60 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDI-SQPLPQLLATIIETAHSRFPVYEDD---------------------RDNIIGILLAKDL   60 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEET-TSCHHHHHHHHHHSCCSEEEEESSS---------------------TTCEEEEEEGGGG
T ss_pred             CCCCHHHhCccHHHeEEECC-CCCHHHHHHHHHHcCCCEEEEEcCC---------------------CCcEEEEEEHHHH
Confidence            46789999975567999999 9999999999999999999999852                     2689999999999


Q ss_pred             HHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178           86 ISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDS  164 (412)
Q Consensus        86 l~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~  164 (412)
                      +.++..          ...+++++|..    ++++.+++++.+|++.|. ++++++||+++                +++
T Consensus        61 ~~~~~~----------~~~~v~~~m~~----~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~----------------~g~  110 (129)
T 3jtf_A           61 LRYMLE----------PALDIRSLVRP----AVFIPEVKRLNVLLREFRASRNHLAIVIDE----------------HGG  110 (129)
T ss_dssp             GGGGTC----------TTSCGGGGCBC----CCEEETTCBHHHHHHHHHTSSCCEEEEECC-----------------CC
T ss_pred             HhHhcc----------CCcCHHHHhCC----CeEeCCCCcHHHHHHHHHhcCCeEEEEEeC----------------CCC
Confidence            987642          14679999852    679999999999999999 89999999863                367


Q ss_pred             eeeeecHHHHHHHHHH
Q 015178          165 EYCWLTQEDLIRYFLN  180 (412)
Q Consensus       165 ~v~iITq~DIv~~l~~  180 (412)
                      ++|+||..||++.+..
T Consensus       111 ~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A          111 ISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             EEEEEEHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHhC
Confidence            8999999999998864

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.63  E-value=1.6e-15  Score=126.45  Aligned_cols=119  Identities=12%  Similarity=0.104  Sum_probs=104.0

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      ++|+++|.  ++++++++ ++|+.+|++.|.++++.++||+|+                      +++++|+|+..||+.
T Consensus         1 ~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~G~vt~~dl~~   55 (122)
T 3kpb_A            1 TLVKDILS--KPPITAHS-NISIMEAAKILIKHNINHLPIVDE----------------------HGKLVGIITSWDIAK   55 (122)
T ss_dssp             CBHHHHCC--SCCCCEET-TSBHHHHHHHHHHHTCSCEEEECT----------------------TSBEEEEECHHHHHH
T ss_pred             CchHHhhC--CCCEEeCC-CCcHHHHHHHHHHcCCCeEEEECC----------------------CCCEEEEEEHHHHHH
Confidence            57899995  57899999 999999999999999999999995                      368999999999999


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      ++...          ..+++++|...   +.++++++++.+|++.|. ++++++||+++                +++.+
T Consensus        56 ~~~~~----------~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----------------~g~~~  106 (122)
T 3kpb_A           56 ALAQN----------KKTIEEIMTRN---VITAHEDEPVDHVAIKMSKYNISGVPVVDD----------------YRRVV  106 (122)
T ss_dssp             HHHTT----------CCBGGGTSBSS---CCCEETTSBHHHHHHHHHHHTCSEEEEECT----------------TCBEE
T ss_pred             HHHhc----------ccCHHHHhcCC---CeEECCCCCHHHHHHHHHHhCCCeEEEECC----------------CCCEE
Confidence            87652          23799999755   889999999999999999 89999999863                36789


Q ss_pred             eeecHHHHHHHHHH
Q 015178          167 CWLTQEDLIRYFLN  180 (412)
Q Consensus       167 ~iITq~DIv~~l~~  180 (412)
                      |+||..||++++.+
T Consensus       107 Givt~~dl~~~l~~  120 (122)
T 3kpb_A          107 GIVTSEDISRLFGG  120 (122)
T ss_dssp             EEEEHHHHHHHHC-
T ss_pred             EEEeHHHHHHHhhc
Confidence            99999999999754

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.63  E-value=1.4e-15  Score=140.93  Aligned_cols=161  Identities=11%  Similarity=0.067  Sum_probs=102.5

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      .+++++|.  ++++++++ ++|+.+|+++|.++++.++||+|.                      +++++|+|+..|+..
T Consensus        13 ~~~~~~~~--~~~~~v~~-~~tv~ea~~~m~~~~~~~~pVvd~----------------------~~~l~Givt~~dl~~   67 (213)
T 1vr9_A           13 MKVKKWVT--QDFPMVEE-SATVRECLHRMRQYQTNECIVKDR----------------------EGHFRGVVNKEDLLD   67 (213)
T ss_dssp             CBGGGGCB--SCSCEEET-TCBHHHHHHHHHHTTSSEEEEECT----------------------TSBEEEEEEGGGGTT
T ss_pred             cCHHHhhc--CCCeEECC-CCcHHHHHHHHHHCCCCEEEEEcC----------------------CCEEEEEEEHHHHHh
Confidence            35788884  67899999 999999999999999999999995                      368999999999876


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      .+.            ..+|+++|...   ++++.+++++.+|+++|. ++++++||+++                +++++
T Consensus        68 ~~~------------~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~g~lv  116 (213)
T 1vr9_A           68 LDL------------DSSVFNKVSLP---DFFVHEEDNITHALLLFLEHQEPYLPVVDE----------------EMRLK  116 (213)
T ss_dssp             SCT------------TSBSGGGCBCT---TCCEETTSBHHHHHHHHHHCCCSEEEEECT----------------TCBEE
T ss_pred             hcC------------CCcHHHHccCC---CEEECCCCcHHHHHHHHHHhCCCEEEEEcC----------------CCEEE
Confidence            532            36799999855   889999999999999999 89999999863                26789


Q ss_pred             eeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC
Q 015178          167 CWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG  237 (412)
Q Consensus       167 ~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g  237 (412)
                      |+||..|+++.+..... ...          .+.+-.+.+.....++.+|.+.|.++++  +.++|++.+|
T Consensus       117 Giit~~Dil~~~~~~~~-~~~----------~~~~l~~~~~~~~~~l~~~~~~l~~~~~--~~l~V~~~~~  174 (213)
T 1vr9_A          117 GAVSLHDFLEALIEALA-MDV----------PGIRFSVLLEDKPGELRKVVDALALSNI--NILSVITTRS  174 (213)
T ss_dssp             EEEEHHHHHHHHHHSCC------------------------------------------------------
T ss_pred             EEEEHHHHHHHHHHHhc-CCC----------CcEEEEEEeCCCCccHHHHHHHHHHCCC--cEEEEEEEec
Confidence            99999999998865221 010          1111101122334569999999999999  9999987654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.62  E-value=8e-16  Score=131.90  Aligned_cols=125  Identities=16%  Similarity=0.151  Sum_probs=104.8

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      +.+|+|+|...++++++++ ++|+.+|++.|.+++++++||++.+                     .++++|+|+..||+
T Consensus         2 ~~~v~~iM~~~~~~~~v~~-~~~v~~a~~~m~~~~~~~~pVvd~~---------------------~~~~vGivt~~dl~   59 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKA-TQTPREFLPAVIDAAHSRYPVIGES---------------------HDDVLGVLLAKDLL   59 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEET-TCCHHHHHHHHHHHCCSEEEEESSS---------------------TTCEEEEEEGGGGG
T ss_pred             CCChHhccccHHHEEEEcC-CCCHHHHHHHHHhCCCCEEEEEcCC---------------------CCcEEEEEEHHHHH
Confidence            5689999975567999999 9999999999999999999999953                     25899999999999


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      +++.+.       .....+++++|.    +++++.+++++.+|++.|. ++++++||+++                ++++
T Consensus        60 ~~~~~~-------~~~~~~v~~~m~----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~----------------~g~l  112 (136)
T 3lfr_A           60 PLILKA-------DGDSDDVKKLLR----PATFVPESKRLNVLLREFRANHNHMAIVIDE----------------YGGV  112 (136)
T ss_dssp             GGGGSS-------SGGGCCGGGTCB----CCCEEETTCBHHHHHHHHHHHTCCEEEEECT----------------TSCE
T ss_pred             HHHHhc-------cCCCcCHHHHcC----CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC----------------CCCE
Confidence            887631       122467999995    2689999999999999999 89999999863                3679


Q ss_pred             eeeecHHHHHHHHHH
Q 015178          166 YCWLTQEDLIRYFLN  180 (412)
Q Consensus       166 v~iITq~DIv~~l~~  180 (412)
                      +|+||..||++.+..
T Consensus       113 vGiit~~Dil~~l~~  127 (136)
T 3lfr_A          113 AGLVTIEDVLEQIVG  127 (136)
T ss_dssp             EEEEEHHHHHTTC--
T ss_pred             EEEEEHHHHHHHHhC
Confidence            999999999987653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.61  E-value=3.5e-15  Score=126.95  Aligned_cols=128  Identities=13%  Similarity=0.109  Sum_probs=105.1

Q ss_pred             ccccc-chhccccCC-CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178            4 RLLSV-GVSDLCIGK-PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC   81 (412)
Q Consensus         4 ~~~~~-~v~dl~~~~-~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt   81 (412)
                      |...+ +++|+|..+ ++++++++ ++|+.+|++.|.++++.++||+| +                      ++++|+|+
T Consensus         1 ~~~~m~~v~~im~~~~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd-~----------------------~~~~Givt   56 (135)
T 2rc3_A            1 FQGHMKTVKHLLQEKGHTVVAIGP-DDSVFNAMQKMAADNIGALLVMK-D----------------------EKLVGILT   56 (135)
T ss_dssp             ----CCBHHHHHHHHCCCCCEECT-TSBHHHHHHHHHHHTCSEEEEEE-T----------------------TEEEEEEE
T ss_pred             CCccceeHHHHHhcCCCCcEEECC-CCcHHHHHHHHHhcCCCEEEEEE-C----------------------CEEEEEEe
Confidence            34456 899999522 57899999 99999999999999999999998 3                      58999999


Q ss_pred             hHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178           82 MVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF  160 (412)
Q Consensus        82 ~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~  160 (412)
                      ..||++++...+.     .....+++++|...   +.++++++++.+|++.|. ++++++||+++               
T Consensus        57 ~~dl~~~~~~~~~-----~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---------------  113 (135)
T 2rc3_A           57 ERDFSRKSYLLDK-----PVKDTQVKEIMTRQ---VAYVDLNNTNEDCMALITEMRVRHLPVLDD---------------  113 (135)
T ss_dssp             HHHHHHHGGGSSS-----CGGGSBGGGTSBCS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEET---------------
T ss_pred             hHHHHHHHHHcCC-----CcccCCHHHhccCC---CeEECCCCcHHHHHHHHHHhCCCEEEEEeC---------------
Confidence            9999976553211     12357899999755   889999999999999999 89999999852               


Q ss_pred             CCCCeeeeecHHHHHHHHHH
Q 015178          161 HNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       161 ~~~~~v~iITq~DIv~~l~~  180 (412)
                        ++.+|+||..||++++.+
T Consensus       114 --g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A          114 --GKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             --TEEEEEEEHHHHHHHHHC
T ss_pred             --CEEEEEEEHHHHHHHHHh
Confidence              468999999999998864

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.61  E-value=7.5e-15  Score=126.00  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=104.6

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCC--eEEEEEehHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAAC--RCIGKVCMVD   84 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~vGivt~~D   84 (412)
                      +++++|+|.  ++++++++ ++|+.+|++.|.++++.++||+|.                      ++  +++|+|+..|
T Consensus         4 ~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~~~Givt~~d   58 (141)
T 2rih_A            4 AIRTSELLK--RPPVSLPE-TATIREVATELAKNRVGLAVLTAR----------------------DNPKRPVAVVSERD   58 (141)
T ss_dssp             -CBGGGGCC--SCCEEEET-TCBHHHHHHHHHHHTCSEEEEEET----------------------TEEEEEEEEEEHHH
T ss_pred             ceEHHHHhc--CCCeEeCC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCcceeEEEEEHHH
Confidence            468999995  57999999 999999999999999999999995                      24  8999999999


Q ss_pred             HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178           85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND  163 (412)
Q Consensus        85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~  163 (412)
                      |+.++.+..       ....+++++|...   +.+++++ ++.+|++.|. ++++++||+++                ++
T Consensus        59 l~~~~~~~~-------~~~~~v~~~m~~~---~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~----------------~g  111 (141)
T 2rih_A           59 ILRAVAQRL-------DLDGPAMPIANSP---ITVLDTD-PVHVAAEKMRRHNIRHVVVVNK----------------NG  111 (141)
T ss_dssp             HHHHHHTTC-------CTTSBSGGGCBCC---CEEETTS-BHHHHHHHHHHHTCSEEEEECT----------------TS
T ss_pred             HHHHHhcCC-------CCCCCHHHHcCCC---CeEEcCC-CHHHHHHHHHHcCCeEEEEEcC----------------CC
Confidence            999876521       1257899999755   8999999 9999999999 89999999863                36


Q ss_pred             CeeeeecHHHHHHHHHH
Q 015178          164 SEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       164 ~~v~iITq~DIv~~l~~  180 (412)
                      +++|+||..||++.+..
T Consensus       112 ~~~Giit~~dll~~~~~  128 (141)
T 2rih_A          112 ELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             CEEEEEEHHHHHSCHHH
T ss_pred             cEEEEEEHHHHHHHHHH
Confidence            78999999999886654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.61  E-value=2.1e-15  Score=127.55  Aligned_cols=122  Identities=14%  Similarity=0.157  Sum_probs=105.3

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      +.+|+++|.  ++++++++ ++|+.+|++.|.++++.++||+|.                       ++++|+|+..||+
T Consensus         4 s~~v~~~m~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~-----------------------~~~~Givt~~dl~   57 (128)
T 3gby_A            4 SVTFSYLAE--TDYPVFTL-GGSTADAARRLAASGCACAPVLDG-----------------------ERYLGMVHLSRLL   57 (128)
T ss_dssp             TCBGGGGCB--CCSCCEET-TSBHHHHHHHHHHHTCSEEEEEET-----------------------TEEEEEEEHHHHH
T ss_pred             ceEHHHhhc--CCcceECC-CCCHHHHHHHHHHCCCcEEEEEEC-----------------------CEEEEEEEHHHHH
Confidence            678999995  56899999 999999999999999999999994                       5899999999999


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      +.+.+..       ....+++++|...   +.++.+++++.+|++.|. ++++++||+++                +++.
T Consensus        58 ~~~~~~~-------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~----------------~g~~  111 (128)
T 3gby_A           58 EGRKGWP-------TVKEKLGEELLET---VRSYRPGEQLFDNLISVAAAKCSVVPLADE----------------DGRY  111 (128)
T ss_dssp             TTCSSSC-------CTTCBCCGGGCBC---CCCBCTTSBGGGSHHHHHHCSSSEEEEECT----------------TCBE
T ss_pred             HHHhhCC-------cccCcHHHHccCC---CcEECCCCCHHHHHHHHHhCCCcEEEEECC----------------CCCE
Confidence            8765321       1136799999855   889999999999999999 89999999863                3678


Q ss_pred             eeeecHHHHHHHHHH
Q 015178          166 YCWLTQEDLIRYFLN  180 (412)
Q Consensus       166 v~iITq~DIv~~l~~  180 (412)
                      +|+||+.|+++++.+
T Consensus       112 ~Giit~~dll~~l~~  126 (128)
T 3gby_A          112 EGVVSRKRILGFLAE  126 (128)
T ss_dssp             EEEEEHHHHHHHHHT
T ss_pred             EEEEEHHHHHHHHHh
Confidence            999999999999864

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.61  E-value=6.1e-15  Score=140.67  Aligned_cols=53  Identities=15%  Similarity=0.083  Sum_probs=50.1

Q ss_pred             cccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          339 VHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       339 ~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      +|...++|+.++++|.+|+.+|...|++|+||++. |+||||||+.||++++..
T Consensus       194 ~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          194 RIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             CEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHC
T ss_pred             cccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence            58899999999999999999999999999999985 899999999999999874

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.61  E-value=1.6e-15  Score=130.84  Aligned_cols=133  Identities=18%  Similarity=0.153  Sum_probs=106.6

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI   85 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di   85 (412)
                      +..+|+|+|....+++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+..||
T Consensus         3 ~~~~v~~im~~~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~G~vt~~dl   59 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKP-TTTVDEALELLVENRITGFPVIDE----------------------DWKLVGLVSDYDL   59 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCT-TSBHHHHHHHHHHTTCSEEEEECT----------------------TCBEEEEEEHHHH
T ss_pred             ceEEhhhccCCCCCCeEECC-CCcHHHHHHHHHHcCCceEEEEeC----------------------CCeEEEEEEHHHH
Confidence            35789999975447999999 999999999999999999999995                      3689999999999


Q ss_pred             HHHhhhcccC-------CCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCC
Q 015178           86 ISFLCKEENL-------LNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLK  157 (412)
Q Consensus        86 l~~l~~~~~l-------~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~  157 (412)
                      +.++......       .........+++++|...   ++++.++++|.+|++.|. ++++++||+++            
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~------------  124 (152)
T 4gqw_A           60 LALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTPA---PLVVEEKTNLEDAAKILLETKYRRLPVVDS------------  124 (152)
T ss_dssp             TTCC----CCHHHHHHHTC-----CCBHHHHSEES---CCCEESSSBHHHHHHHHHHSSCCEEEEECT------------
T ss_pred             HHhhcccCcccchHHHHHHHHHhccccHHHhcCCC---ceEECCCCcHHHHHHHHHHCCCCEEEEECC------------
Confidence            8754421100       000122357899999855   789999999999999999 89999999863            


Q ss_pred             cccCCCCeeeeecHHHHHHHHHH
Q 015178          158 STFHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       158 ~~~~~~~~v~iITq~DIv~~l~~  180 (412)
                          +++++|+||..||++++.+
T Consensus       125 ----~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A          125 ----DGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             ----TSBEEEEEEHHHHHHHHHC
T ss_pred             ----CCcEEEEEEHHHHHHHHHh
Confidence                3678999999999999875

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.60  E-value=5.9e-15  Score=125.86  Aligned_cols=126  Identities=13%  Similarity=0.098  Sum_probs=106.7

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      .|...+++++|.  ++++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+..
T Consensus         3 ~l~~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Givt~~   57 (138)
T 2yzi_A            3 MDMKAPIKVYMT--KKLLGVKP-STSVQEASRLMMEFDVGSLVVIND----------------------DGNVVGFFTKS   57 (138)
T ss_dssp             CCTTSBGGGTCB--CCCCEECT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEEHH
T ss_pred             chhhhhHHHHhc--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCcEEEEEeHH
Confidence            466889999995  57899999 999999999999999999999995                      36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||++.+...+.      ....+++++|...   +.++++++++.+|++.|. ++++++ |+++                +
T Consensus        58 dl~~~~~~~~~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~----------------~  111 (138)
T 2yzi_A           58 DIIRRVIVPGL------PYDIPVERIMTRN---LITANVNTPLGEVLRKMAEHRIKHI-LIEE----------------E  111 (138)
T ss_dssp             HHHHHTTTTCC------CTTSBGGGTCBCS---CCEEETTSBHHHHHHHHHHHTCSEE-EEEE----------------T
T ss_pred             HHHHHHHhcCC------cccCCHHHHhhCC---CeEECCCCcHHHHHHHHHhcCCCEE-EECC----------------C
Confidence            99854432111      2357899999755   889999999999999999 899999 8752                3


Q ss_pred             CCeeeeecHHHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~  180 (412)
                      ++++|+||+.||++++.+
T Consensus       112 g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A          112 GKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             TEEEEEEEHHHHHHHHHC
T ss_pred             CCEEEEEEHHHHHHHHHH
Confidence            678999999999999875

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.60  E-value=4.7e-15  Score=129.61  Aligned_cols=125  Identities=18%  Similarity=0.174  Sum_probs=107.5

Q ss_pred             cchhccccCC----CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            8 VGVSDLCIGK----PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         8 ~~v~dl~~~~----~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      ++|+|+|..+    ++++++++ ++|+.+|++.|.++++.++||.+                       +++++|+|+..
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~V~~-----------------------~~~~~Givt~~   62 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTK-NDFVYDAIKLMAEKGIGALLVVD-----------------------GDDIAGIVTER   62 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEET-TSBHHHHHHHHHHHTCSEEEEES-----------------------SSSEEEEEEHH
T ss_pred             HHHHHHHhcccccCCCCeEECC-CCcHHHHHHHHHHcCCCEEEEee-----------------------CCEEEEEEEHH
Confidence            4699999765    67899999 99999999999999999999955                       36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||++++.....     .....+++++|...   +.++++++++.+|++.|. ++++++||+++                 
T Consensus        63 dl~~~~~~~~~-----~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-----------------  117 (157)
T 4fry_A           63 DYARKVVLQER-----SSKATRVEEIMTAK---VRYVEPSQSTDECMALMTEHRMRHLPVLDG-----------------  117 (157)
T ss_dssp             HHHHHSGGGTC-----CSSSCBHHHHSBSS---CCCBCTTSBHHHHHHHHHHHTCSEEEEEET-----------------
T ss_pred             HHHHHHHhccC-----CccccCHHHHcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEEC-----------------
Confidence            99998875321     12357899999865   889999999999999999 89999999852                 


Q ss_pred             CCeeeeecHHHHHHHHHHc
Q 015178          163 DSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~  181 (412)
                      ++++|+||+.||++++.+.
T Consensus       118 g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A          118 GKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             TEEEEEEEHHHHHHHHHTT
T ss_pred             CEEEEEEEHHHHHHHHHHH
Confidence            5689999999999999764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.60  E-value=5.7e-15  Score=123.46  Aligned_cols=121  Identities=15%  Similarity=0.253  Sum_probs=103.6

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      ++++|+|.  ++++++++ ++|+.+|++.|.++++.++||+| +                      ++++|+++..|++.
T Consensus         1 m~v~~~m~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd-~----------------------~~~~G~it~~dl~~   54 (125)
T 1pbj_A            1 MRVEDVMV--TDVDTIDI-TASLEDVLRNYVENAKGSSVVVK-E----------------------GVRVGIVTTWDVLE   54 (125)
T ss_dssp             -CHHHHCB--CSCCEEET-TCBHHHHHHHHHHHCCCEEEEEE-T----------------------TEEEEEEEHHHHHH
T ss_pred             CCHHHhcC--CCceEECC-CCcHHHHHHHHHHcCCCEEEEEe-C----------------------CeeEEEEeHHHHHH
Confidence            57899995  57899999 99999999999999999999999 3                      58999999999998


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      ++.+...      ....+++++|...   +.++++++++.+|++.|. ++++++||+++                 ++.+
T Consensus        55 ~~~~~~~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-----------------~~~~  108 (125)
T 1pbj_A           55 AIAEGDD------LAEVKVWEVMERD---LVTISPRATIKEAAEKMVKNVVWRLLVEED-----------------DEII  108 (125)
T ss_dssp             HHHHTCC------TTTSBHHHHCBCG---GGEECTTSCHHHHHHHHHHHTCSEEEEEET-----------------TEEE
T ss_pred             HHhcCCc------ccccCHHHHcCCC---CeEECCCCCHHHHHHHHHhcCCcEEEEEEC-----------------CEEE
Confidence            8765321      1257899999754   889999999999999999 89999999852                 5688


Q ss_pred             eeecHHHHHHHHHH
Q 015178          167 CWLTQEDLIRYFLN  180 (412)
Q Consensus       167 ~iITq~DIv~~l~~  180 (412)
                      |+||..|+++++.+
T Consensus       109 Gvit~~dl~~~l~~  122 (125)
T 1pbj_A          109 GVISATDILRAKMA  122 (125)
T ss_dssp             EEEEHHHHHHHHC-
T ss_pred             EEEEHHHHHHHHHh
Confidence            99999999998753

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.60  E-value=2.9e-15  Score=145.23  Aligned_cols=122  Identities=24%  Similarity=0.246  Sum_probs=102.8

Q ss_pred             CCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhc-----CCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcC
Q 015178          189 PNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQS-----HINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLS  263 (412)
Q Consensus       189 ~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~-----~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls  263 (412)
                      ...++++  +|+++ ++++.+++++.+|++.|.++     ++  +.+||||++|+++|+                   +|
T Consensus       135 ~~~~v~~--iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~--~~~pVvd~~~~lvGi-------------------vt  190 (286)
T 2oux_A          135 EDETAGA--IMTTE-FVSIVANQTVRSAMYVLKNQADMAETI--YYVYVVDQENHLVGV-------------------IS  190 (286)
T ss_dssp             CTTBHHH--HCBSC-CCEECSSSBHHHHHHHHHHHCSSCSCC--SEEEEECTTCBEEEE-------------------EE
T ss_pred             ChHHHHH--hCCCC-ceEECCCCcHHHHHHHHHHcccCccce--eEEEEEcCCCeEEEE-------------------EE
Confidence            3456665  68888 99999999999999999998     77  889999999999999                   55


Q ss_pred             HhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC
Q 015178          264 AGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE  343 (412)
Q Consensus       264 ~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~  343 (412)
                      ..|++....                                                            ..++.++|.++
T Consensus       191 ~~dll~~~~------------------------------------------------------------~~~v~~im~~~  210 (286)
T 2oux_A          191 LRDLIVNDD------------------------------------------------------------DTLIADILNER  210 (286)
T ss_dssp             HHHHTTSCT------------------------------------------------------------TSBHHHHSBSC
T ss_pred             HHHHHcCCC------------------------------------------------------------CCcHHHHcCCC
Confidence            666654100                                                            01134578888


Q ss_pred             ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178          344 AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL  394 (412)
Q Consensus       344 vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~  394 (412)
                      +++|++++++.+++.+|.+++++++||||++|+++||||..||++.+.+..
T Consensus       211 ~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          211 VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999988653

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.60  E-value=4.9e-15  Score=129.88  Aligned_cols=134  Identities=16%  Similarity=0.194  Sum_probs=109.7

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      .|..++|+++|..+.+++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+..
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~~pVvd~----------------------~~~lvGivt~~   66 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQV-GNNLEHALLVLTKTGYTAIPVLDP----------------------SYRLHGLIGTN   66 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEET-TCBHHHHHHHHHHHCCSEEEEECT----------------------TCBEEEEEEHH
T ss_pred             HHhHhhHHHHhCCccceEEECC-CCcHHHHHHHHHhCCCcEEEEECC----------------------CCCEEEEeEHH
Confidence            4668899999964337999999 999999999999999999999995                      36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||+.++...... ........+|+++|...   +.++.+++++.+|++.|. +++  +||+++                +
T Consensus        67 dl~~~~~~~~~~-~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~--lpVvd~----------------~  124 (159)
T 1yav_A           67 MIMNSIFGLERI-EFEKLDQITVEEVMLTD---IPRLHINDPIMKGFGMVINNGF--VCVEND----------------E  124 (159)
T ss_dssp             HHHHHHBCSSSB-CGGGTTTSBHHHHSBCS---CCEEETTSBHHHHHHHTTTCSE--EEEECT----------------T
T ss_pred             HHHHHhhhhccc-chhhhccCCHHHhcCCC---CceEcCCCCHHHHHHHHHhCCE--EEEEeC----------------C
Confidence            999987653221 11223457899999855   889999999999999999 665  888753                3


Q ss_pred             CCeeeeecHHHHHHHHHHcc
Q 015178          163 DSEYCWLTQEDLIRYFLNCI  182 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~~  182 (412)
                      ++++|+||+.||++++.+..
T Consensus       125 g~~vGiit~~dil~~~~~~~  144 (159)
T 1yav_A          125 QVFEGIFTRRVVLKELNKHI  144 (159)
T ss_dssp             CBEEEEEEHHHHHHHHHHHC
T ss_pred             CeEEEEEEHHHHHHHHHHHH
Confidence            67899999999999987643

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.60  E-value=6.5e-15  Score=128.38  Aligned_cols=135  Identities=16%  Similarity=0.185  Sum_probs=108.7

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      .|..++|+++|....+++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+..
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~----------------------~~~~~Givt~~   63 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQP-GNYLDHALLVLTKTGYSAIPVLDT----------------------SYKLHGLISMT   63 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCT-TSBHHHHHHHHHHSSSSEEEEECT----------------------TCCEEEEEEHH
T ss_pred             hHhhCcHHhhccCCccceEECC-CCcHHHHHHHHHHCCceEEEEEcC----------------------CCCEEEEeeHH
Confidence            4668899999964347899999 999999999999999999999995                      36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||+.++...... ........+++++|...   +.++++++++.+|++.|. +++  +||+++                +
T Consensus        64 dl~~~~~~~~~~-~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~----------------~  121 (157)
T 2emq_A           64 MMMDAILGLERI-EFERLETMKVEEVMNRN---IPRLRLDDSLMKAVGLIVNHPF--VCVEND----------------D  121 (157)
T ss_dssp             HHHHHSBCSSSB-CGGGGGTCBGGGTCBCC---CCEEETTSBHHHHHHHHHHSSE--EEEECS----------------S
T ss_pred             HHHHHHhccccc-chHHhcCCcHHHHhCCC---CceecCCCcHHHHHHHHhhCCE--EEEEcC----------------C
Confidence            999987642211 11123457899999855   889999999999999999 776  888753                3


Q ss_pred             CCeeeeecHHHHHHHHHHccC
Q 015178          163 DSEYCWLTQEDLIRYFLNCIG  183 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~~~  183 (412)
                      ++++|+||..||++++.....
T Consensus       122 g~~~Giit~~dil~~~~~~~~  142 (157)
T 2emq_A          122 GYFAGIFTRREVLKQLNKQLH  142 (157)
T ss_dssp             SSEEEEEEHHHHHHHHHHTTC
T ss_pred             CeEEEEEEHHHHHHHHHHHhh
Confidence            678999999999999987543

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.60  E-value=5.1e-15  Score=132.96  Aligned_cols=124  Identities=14%  Similarity=0.096  Sum_probs=105.7

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      |...+|+++|...++++++++ ++|+.+|++.|.+++++++||++.+                     .++++|+|+..|
T Consensus        33 l~~~~v~diM~~~~~v~~v~~-~~tv~ea~~~m~~~~~~~~pVvd~~---------------------~~~lvGivt~~D   90 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNI-DDDAATIRQQLTAAPHSFFPVCRGS---------------------LDEVVGIGRAKD   90 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEET-TSCHHHHHHHHHHSSCSEEEEESSS---------------------TTSEEEEEEHHH
T ss_pred             cCCCCHHHhCCcHHHeEEEeC-CCCHHHHHHHHHhCCCCEEEEEeCC---------------------CCCEEEEEEHHH
Confidence            567899999975567999999 9999999999999999999999853                     268999999999


Q ss_pred             HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178           85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND  163 (412)
Q Consensus        85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~  163 (412)
                      |+.++.+..         ..+++ +| ..   ++++.+++++.+|++.|. ++++++||+++                ++
T Consensus        91 l~~~~~~~~---------~~~v~-~~-~~---~~~v~~~~~l~~al~~m~~~~~~~~~Vvde----------------~g  140 (173)
T 3ocm_A           91 LVADLITEG---------RVRRN-RL-RD---PIIVHESIGILRLMDTLKRSRGQLVLVADE----------------FG  140 (173)
T ss_dssp             HHHHHHHHS---------SCCGG-GS-BC---CCEECGGGCHHHHHHHHHHSTTCCEEEECT----------------TC
T ss_pred             HHHHHhcCC---------cchhH-hc-CC---CeEECCCCcHHHHHHHHHHcCCeEEEEEeC----------------CC
Confidence            999876421         35677 44 33   689999999999999999 89999999863                36


Q ss_pred             CeeeeecHHHHHHHHHH
Q 015178          164 SEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       164 ~~v~iITq~DIv~~l~~  180 (412)
                      +++||||..||++.+..
T Consensus       141 ~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          141 AIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             CEEEEECHHHHHHHHHC
T ss_pred             CEEEEEeHHHHHHHHhC
Confidence            79999999999999864

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.59  E-value=7.9e-15  Score=129.14  Aligned_cols=131  Identities=17%  Similarity=0.206  Sum_probs=107.5

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI   85 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di   85 (412)
                      +.++|+|+|.  ++++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+..||
T Consensus         3 ~~~~v~dim~--~~~~~v~~-~~tl~~a~~~m~~~~~~~~pVvd~----------------------~~~lvGivt~~dl   57 (160)
T 2o16_A            3 LMIKVEDMMT--RHPHTLLR-THTLNDAKHLMEALDIRHVPIVDA----------------------NKKLLGIVSQRDL   57 (160)
T ss_dssp             CCCBGGGTSE--ESCCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEEEHHHH
T ss_pred             CcCcHHHHhc--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCcEEEEEeHHHH
Confidence            4678999995  57899999 999999999999999999999995                      3689999999999


Q ss_pred             HHHhhhccc-CC-CcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           86 ISFLCKEEN-LL-NPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        86 l~~l~~~~~-l~-~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      +.++..... .. ........+++++|...   +++++++++|.+|++.|. ++++++||+++                 
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----------------  117 (160)
T 2o16_A           58 LAAQESSLQRSAQGDSLAFETPLFEVMHTD---VTSVAPQAGLKESAIYMQKHKIGCLPVVAK-----------------  117 (160)
T ss_dssp             HHHHHHHCC---------CCCBHHHHSCSC---EEEBCTTSBHHHHHHHHHHTTCSCEEEEET-----------------
T ss_pred             HHHHHHhhcccccccchhcccCHHHHhcCC---CeEECCCCCHHHHHHHHHHhCCCEEEEEEC-----------------
Confidence            998764100 00 00112357899999855   899999999999999999 89999999852                 


Q ss_pred             CCeeeeecHHHHHHHHHHc
Q 015178          163 DSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~  181 (412)
                      ++++|+||..||++++.+.
T Consensus       118 g~lvGiit~~dil~~~~~~  136 (160)
T 2o16_A          118 DVLVGIITDSDFVTIAINL  136 (160)
T ss_dssp             TEEEEEECHHHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHHH
Confidence            5689999999999998763

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.59  E-value=6.6e-15  Score=141.79  Aligned_cols=120  Identities=21%  Similarity=0.256  Sum_probs=100.1

Q ss_pred             CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhc-----CCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCH
Q 015178          190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQS-----HINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSA  264 (412)
Q Consensus       190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~-----~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~  264 (412)
                      ..++++  +|+++ ++++.+++++.+|++.|.++     ++  +.+||+|++|+++|+                   ++.
T Consensus       134 ~~~v~~--iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~--~~~~Vvd~~~~lvGi-------------------vt~  189 (278)
T 2yvy_A          134 EDEAGG--LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETI--YYIYVVDEKGRLKGV-------------------LSL  189 (278)
T ss_dssp             TTBGGG--TCBSC-CCEECTTSBHHHHHHHHHHHTTTCSCS--SEEEEECTTCBEEEE-------------------EEH
T ss_pred             cchHHh--hcCCC-ceEECCCCcHHHHHHHHHHccCCccce--eEEEEECCCCCEEEE-------------------EEH
Confidence            345554  78888 99999999999999999987     78  999999999999999                   566


Q ss_pred             hhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCc
Q 015178          265 GDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEA  344 (412)
Q Consensus       265 ~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~v  344 (412)
                      +|++....                                                            ..++.++|.+++
T Consensus       190 ~dll~~~~------------------------------------------------------------~~~v~~im~~~~  209 (278)
T 2yvy_A          190 RDLIVADP------------------------------------------------------------RTRVAEIMNPKV  209 (278)
T ss_dssp             HHHHHSCT------------------------------------------------------------TCBSTTTSBSSC
T ss_pred             HHHhcCCC------------------------------------------------------------CCcHHHHhCCCC
Confidence            77654100                                                            011356788899


Q ss_pred             eEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          345 ILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       345 vt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      ++|++++++.+++++|.+++++++||||++|+++||||..||++.+.+.
T Consensus       210 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e  258 (278)
T 2yvy_A          210 VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  258 (278)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC---
T ss_pred             eEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998754

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.58  E-value=2e-15  Score=134.24  Aligned_cols=134  Identities=20%  Similarity=0.191  Sum_probs=106.8

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      .++|+|+|..+.+++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+..||+
T Consensus         3 ~~~v~dim~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~~pVvd~----------------------~~~~~Givt~~dl~   59 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKP-STSVDDALELLVEKKVTGLPVIDD----------------------NWTLVGVVSDYDLL   59 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEEEHHHHT
T ss_pred             ceeHHHhcCCCCCceeeCC-CCcHHHHHHHHHHcCCCeEEEECC----------------------CCeEEEEEEHHHHH
Confidence            3689999974447999999 999999999999999999999996                      36899999999998


Q ss_pred             HHhhhccc------C-------CC--------cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecC
Q 015178           87 SFLCKEEN------L-------LN--------PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPL  144 (412)
Q Consensus        87 ~~l~~~~~------l-------~~--------~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~  144 (412)
                      +++.....      +       +.        .......+++++|...   ++++.++++|.+|++.|. ++++++||++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  136 (180)
T 3sl7_A           60 ALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPS---PLVVRDSTNLEDAARLLLETKFRRLPVVD  136 (180)
T ss_dssp             CC-------------------CCCSHHHHHHHHHTTTTCBHHHHSEES---CCCEETTSBHHHHHHHHTTSTTCEEEEEC
T ss_pred             hhhhhccccCCcccccccccchhhhhHHHHHHHhccccccHHHHhCCC---ceEeCCCCcHHHHHHHHHHcCCCEEEEEC
Confidence            64321000      0       00        0112357899999855   789999999999999999 8999999986


Q ss_pred             CCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHcc
Q 015178          145 PAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCI  182 (412)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~  182 (412)
                      +                +++++|+||+.||++++.+..
T Consensus       137 ~----------------~g~~vGiit~~dil~~~~~~~  158 (180)
T 3sl7_A          137 A----------------DGKLIGILTRGNVVRAALQIK  158 (180)
T ss_dssp             T----------------TCBEEEEEEHHHHHHHHHHHH
T ss_pred             C----------------CCeEEEEEEHHHHHHHHHHHh
Confidence            3                367999999999999998743

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.58  E-value=1.7e-15  Score=128.41  Aligned_cols=126  Identities=13%  Similarity=0.121  Sum_probs=103.4

Q ss_pred             ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178            3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM   82 (412)
Q Consensus         3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~   82 (412)
                      ++++-++++++|.  ++++++++ ++|+.+|++.|.++++.++||+|+                      +++++|+|+.
T Consensus         3 d~~~~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Givt~   57 (133)
T 1y5h_A            3 DPFTMTTARDIMN--AGVTCVGE-HETLTAAAQYMREHDIGALPICGD----------------------DDRLHGMLTD   57 (133)
T ss_dssp             -----CCHHHHSE--ETCCCEET-TSBHHHHHHHHHHHTCSEEEEECG----------------------GGBEEEEEEH
T ss_pred             ChhhhcCHHHHhc--CCceEeCC-CCCHHHHHHHHHHhCCCeEEEECC----------------------CCeEEEEEeH
Confidence            3567789999996  57889999 999999999999999999999985                      3689999999


Q ss_pred             HHHHH-HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178           83 VDIIS-FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF  160 (412)
Q Consensus        83 ~Dil~-~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~  160 (412)
                      .|++. ++.+...      ....+++++|...   +.++++++++.+|++.|. ++++++||+++               
T Consensus        58 ~dl~~~~~~~~~~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---------------  113 (133)
T 1y5h_A           58 RDIVIKGLAAGLD------PNTATAGELARDS---IYYVDANASIQEMLNVMEEHQVRRVPVISE---------------  113 (133)
T ss_dssp             HHHHHTTGGGTCC------TTTSBHHHHHTTC---CCCEETTCCHHHHHHHHHHHTCSEEEEEET---------------
T ss_pred             HHHHHHHHhcCCC------ccccCHHHHhcCC---CEEECCCCCHHHHHHHHHHcCCCEEEEEEC---------------
Confidence            99994 5543211      1247899999755   889999999999999999 89999999853               


Q ss_pred             CCCCeeeeecHHHHHHHHH
Q 015178          161 HNDSEYCWLTQEDLIRYFL  179 (412)
Q Consensus       161 ~~~~~v~iITq~DIv~~l~  179 (412)
                        ++++|+||..||++++.
T Consensus       114 --g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A          114 --HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             --TEEEEEEEHHHHHHTCC
T ss_pred             --CEEEEEEEHHHHHHHHH
Confidence              56899999999998764

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.58  E-value=1.2e-14  Score=124.37  Aligned_cols=131  Identities=16%  Similarity=0.168  Sum_probs=106.1

Q ss_pred             cccccchhc---cccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEE
Q 015178            4 RLLSVGVSD---LCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKV   80 (412)
Q Consensus         4 ~~~~~~v~d---l~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGiv   80 (412)
                      .+.+.++++   +|  .++++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|
T Consensus         4 ~~~~~~v~~~~~~~--~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Giv   58 (144)
T 2nyc_A            4 HFLKIPIGDLNIIT--QDNMKSCQM-TTPVIDVIQMLTQGRVSSVPIIDE----------------------NGYLINVY   58 (144)
T ss_dssp             GGGGSBGGGSSCCB--CSSCCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEE
T ss_pred             chhhcchhhcCCCC--CCCceEECC-CCcHHHHHHHHHHcCcceeeEEcC----------------------CCcEEEEE
Confidence            355778899   55  367999999 999999999999999999999995                      36899999


Q ss_pred             ehHHHHHHhhhcccCCCcccccCCchhhhccCCC---CceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCC
Q 015178           81 CMVDIISFLCKEENLLNPESALQDPVSVLLPEAS---GVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSL  156 (412)
Q Consensus        81 t~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~---~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~  156 (412)
                      +..||+.++.+..     ......+++++|....   .++.+++++++|.+|++.|. ++++++||+++           
T Consensus        59 t~~dl~~~~~~~~-----~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-----------  122 (144)
T 2nyc_A           59 EAYDVLGLIKGGI-----YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-----------  122 (144)
T ss_dssp             EHHHHHHHHHTC---------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-----------
T ss_pred             cHHHHHHHhcccc-----cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-----------
Confidence            9999999876421     1123578999996421   14789999999999999999 89999999863           


Q ss_pred             CcccCCCCeeeeecHHHHHHHHHH
Q 015178          157 KSTFHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       157 ~~~~~~~~~v~iITq~DIv~~l~~  180 (412)
                           +++++|+||..||++++.+
T Consensus       123 -----~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A          123 -----VGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             -----TSBEEEEEEHHHHHHHHHH
T ss_pred             -----CCCEEEEEEHHHHHHHHHh
Confidence                 3678999999999999865

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.57  E-value=7.2e-15  Score=127.61  Aligned_cols=120  Identities=15%  Similarity=0.207  Sum_probs=103.2

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      ++|+|+|....+++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+..||+.
T Consensus        28 ~~v~dim~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Givt~~dl~~   84 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGL-QATLRDALLEITRKNLGMTAICDD----------------------DMNIIGIFTDGDLRR   84 (149)
T ss_dssp             SBGGGTSBCGGGSCEECT-TCBHHHHHHHHHHHTSSEEEEECT----------------------TCBEEEEEEHHHHHH
T ss_pred             cCHHHHhcCCCCCeEECC-CCcHHHHHHHHHhCCCcEEEEECC----------------------CCcEEEEecHHHHHH
Confidence            589999963227999999 999999999999999999999995                      368999999999999


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      .+.+...      ....+++++|...   ++++++++++.+|++.|. ++++++||+++                 ++++
T Consensus        85 ~~~~~~~------~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----------------~~~~  138 (149)
T 3k2v_A           85 VFDTGVD------MRDASIADVMTRG---GIRIRPGTLAVDALNLMQSRHITCVLVADG-----------------DHLL  138 (149)
T ss_dssp             HHCSSSC------CTTCBHHHHSEES---CCEECTTCBHHHHHHHHHHHTCSEEEEEET-----------------TEEE
T ss_pred             HHhcCCC------cccCcHHHHcCCC---CeEECCCCCHHHHHHHHHHcCCCEEEEecC-----------------CEEE
Confidence            8865221      2357899999755   789999999999999999 89999999863                 2688


Q ss_pred             eeecHHHHHH
Q 015178          167 CWLTQEDLIR  176 (412)
Q Consensus       167 ~iITq~DIv~  176 (412)
                      |+||..||++
T Consensus       139 Giit~~dil~  148 (149)
T 3k2v_A          139 GVVHMHDLLR  148 (149)
T ss_dssp             EEEEHHHHTC
T ss_pred             EEEEHHHhhc
Confidence            9999999974

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.56  E-value=1.1e-14  Score=130.08  Aligned_cols=138  Identities=15%  Similarity=0.119  Sum_probs=107.9

Q ss_pred             ccccccchhccccCCCC--eEEE--ecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEE
Q 015178            3 VRLLSVGVSDLCIGKPA--LRSL--SVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIG   78 (412)
Q Consensus         3 ~~~~~~~v~dl~~~~~~--lv~v--~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vG   78 (412)
                      .++...+|+|+|....+  ++++  ++ ++|+.+|++.|.+++++++||++.+.                    +++++|
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~-~~~~~~a~~~~~~~~~~~~pVv~~d~--------------------~~~lvG   64 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQD-SMTVEDVETIISETTYSGFPVVVSRE--------------------SQRLVG   64 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESS-CEEHHHHHHHHHHCCCSEEEEESCTT--------------------TCBEEE
T ss_pred             hhhccCcHHHHhcccccCceEEEecCC-CccHHHHHHHHHhcCCCceeEEEECC--------------------CCeEEE
Confidence            46788999999974422  7777  99 99999999999999999999994211                    468999


Q ss_pred             EEehHHHHHHhhhccc----CCC--------------cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCce
Q 015178           79 KVCMVDIISFLCKEEN----LLN--------------PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQN  139 (412)
Q Consensus        79 ivt~~Dil~~l~~~~~----l~~--------------~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~R  139 (412)
                      +|+..||+.++.....    +..              .......+++++|...   ++++.++++|.+|++.|. +++++
T Consensus        65 iit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~  141 (185)
T 2j9l_A           65 FVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS---PFTVTDLTPMEIVVDIFRKLGLRQ  141 (185)
T ss_dssp             EEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESS---CCEEETTSBHHHHHHHHHHHTCSE
T ss_pred             EEEHHHHHHHHHhhcccCCCccccceeecccCCcccccccccCccHHHhhCcC---CeEeCCCCCHHHHHHHHHhCCCcE
Confidence            9999999998764210    000              0012346799999755   889999999999999999 99999


Q ss_pred             eeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHc
Q 015178          140 LVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       140 l~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~  181 (412)
                      +||++                 +++++|+||..||++++.+.
T Consensus       142 l~Vvd-----------------~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          142 CLVTH-----------------NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             EEEEE-----------------TTEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEE-----------------CCEEEEEEEHHHHHHHHHHh
Confidence            99985                 25689999999999999874

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.56  E-value=4.1e-14  Score=123.83  Aligned_cols=129  Identities=10%  Similarity=0.085  Sum_probs=105.5

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCce-EEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESY-ISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~s-vPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      ...+|+++|.  ++++++++ ++|+.+|++.|.++++.+ +||+|.                      + +++|+|+..|
T Consensus        14 ~~~~v~~im~--~~~~~v~~-~~tl~ea~~~m~~~~~~~~~~Vvd~----------------------~-~~vGivt~~d   67 (157)
T 1o50_A           14 KVKDVCKLIS--LKPTVVEE-DTPIEEIVDRILEDPVTRTVYVARD----------------------N-KLVGMIPVMH   67 (157)
T ss_dssp             BHHHHTTSSC--CCCEEECT-TCBHHHHHHHHHHSTTCCEEEEEET----------------------T-EEEEEEEHHH
T ss_pred             ccccHhhccc--CCCceECC-CCCHHHHHHHHHhCCCCccEEEEEC----------------------C-EEEEEEEHHH
Confidence            4567999994  67999999 999999999999999999 999994                      3 8999999999


Q ss_pred             HHHHhhh--------cccCCC-cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCC
Q 015178           85 IISFLCK--------EENLLN-PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKP  154 (412)
Q Consensus        85 il~~l~~--------~~~l~~-~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~  154 (412)
                      |+.++..        .+.+.. .......+++++|.   . +++++++++|.+|++.|. ++++++||+++         
T Consensus        68 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~---~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---------  134 (157)
T 1o50_A           68 LLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIML---D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE---------  134 (157)
T ss_dssp             HHHHHHHHHHCCCC-------CCCCCSSCBHHHHCB---C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT---------
T ss_pred             HHHHHhhhHHhhhccHHHHHHHHHHHcCCcHHHHcC---C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC---------
Confidence            9987641        000000 01224578999997   3 789999999999999999 89999999863         


Q ss_pred             CCCcccCCCCeeeeecHHHHHHHHHH
Q 015178          155 SLKSTFHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       155 ~~~~~~~~~~~v~iITq~DIv~~l~~  180 (412)
                             +++++|+||..||++++.+
T Consensus       135 -------~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A          135 -------KGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             -------TSCEEEEEEHHHHHHHHHH
T ss_pred             -------CCEEEEEEEHHHHHHHHHH
Confidence                   3678999999999999876

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.56  E-value=5.4e-15  Score=129.78  Aligned_cols=121  Identities=14%  Similarity=0.131  Sum_probs=103.6

Q ss_pred             cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      -|...+|+|+|....+++++++ ++|+.+|++.|.+++++++||++.+                     .++++|+|+..
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~-~~~i~~a~~~m~~~~~~~~pVvd~~---------------------~~~lvGivt~~   91 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKE-NDSIERITAYVIDTAHSRFPVIGED---------------------KDEVLGILHAK   91 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEET-TCCHHHHHHHHHHHCCSEEEEESSS---------------------TTCEEEEEEGG
T ss_pred             ccCCCCHhheeeeHHHeEEECC-CCCHHHHHHHHHHCCCCEEEEEcCC---------------------CCcEEEEEEHH
Confidence            3567899999974447999999 9999999999999999999999953                     24899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||+..+.+.         ...+++++|.    +++++.+++++.+|++.|. ++++++||+++                +
T Consensus        92 dl~~~~~~~---------~~~~v~~im~----~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~----------------~  142 (156)
T 3oi8_A           92 DLLKYMFNP---------EQFHLKSILR----PAVFVPEGKSLTALLKEFREQRNHMAIVIDE----------------Y  142 (156)
T ss_dssp             GGGGGSSCG---------GGCCHHHHCB----CCCEEETTSBHHHHHHHHHHTTCCEEEEECT----------------T
T ss_pred             HHHHHHHcC---------CcccHHHHcC----CCEEECCCCCHHHHHHHHHhcCCeEEEEECC----------------C
Confidence            999876531         3467999995    2689999999999999999 89999999863                3


Q ss_pred             CCeeeeecHHHHH
Q 015178          163 DSEYCWLTQEDLI  175 (412)
Q Consensus       163 ~~~v~iITq~DIv  175 (412)
                      ++++|+||..||+
T Consensus       143 g~~~Givt~~Dil  155 (156)
T 3oi8_A          143 GGTSGLVTFEDII  155 (156)
T ss_dssp             SSEEEEEEHHHHC
T ss_pred             CCEEEEEEHHHhc
Confidence            6789999999986

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.55  E-value=2.7e-14  Score=124.99  Aligned_cols=136  Identities=12%  Similarity=0.109  Sum_probs=108.1

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      +..++|+|+|.  +++++++. ++|+.+|++.|.++++.++||+|.+.                    +++++|+|+..|
T Consensus        10 ~~~~~v~dim~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~pVvd~~~--------------------~~~~~Givt~~d   66 (164)
T 2pfi_A           10 SHHVRVEHFMN--HSITTLAK-DTPLEEVVKVVTSTDVTEYPLVESTE--------------------SQILVGIVQRAQ   66 (164)
T ss_dssp             CCSCBHHHHCB--CCCCCEET-TCBHHHHHHHHHTCCCSEEEEESCTT--------------------TCBEEEEEEHHH
T ss_pred             ccCCCHHHHcC--CCCeEECC-CCcHHHHHHHHHhCCCCceeEEecCC--------------------CCEEEEEEEHHH
Confidence            34678999995  57899999 99999999999999999999999511                    368999999999


Q ss_pred             HHHHhhhcccCCCcccccCCchhhhccCC--CCc-eEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178           85 IISFLCKEENLLNPESALQDPVSVLLPEA--SGV-IRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF  160 (412)
Q Consensus        85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~--~~~-~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~  160 (412)
                      |+.++......  .......+++++|...  ..+ ++++++++++.+|++.|. ++++++||+++               
T Consensus        67 l~~~~~~~~~~--~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---------------  129 (164)
T 2pfi_A           67 LVQALQAEPPS--RAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR---------------  129 (164)
T ss_dssp             HHHHHHC---------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET---------------
T ss_pred             HHHHHHhhccc--cCCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC---------------
Confidence            99987642110  0112346799999744  223 679999999999999999 89999999852               


Q ss_pred             CCCCeeeeecHHHHHHHHHHcc
Q 015178          161 HNDSEYCWLTQEDLIRYFLNCI  182 (412)
Q Consensus       161 ~~~~~v~iITq~DIv~~l~~~~  182 (412)
                        ++++|+||+.||++++.+..
T Consensus       130 --g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A          130 --GRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             --TEEEEEEEHHHHHHHHHHHH
T ss_pred             --CEEEEEEEHHHHHHHHHhhh
Confidence              56899999999999987743

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.54  E-value=2.7e-14  Score=128.54  Aligned_cols=125  Identities=14%  Similarity=0.177  Sum_probs=106.2

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      +++|+++|.  ++++++++ ++|+.+|++.|.++++.++||+|.                      +++++|+|+..||+
T Consensus         8 ~~~v~~im~--~~~~~v~~-~~~l~ea~~~~~~~~~~~~pVvd~----------------------~g~~vGivt~~dl~   62 (184)
T 1pvm_A            8 FMRVEKIMN--SNFKTVNW-NTTVFDAVKIMNENHLYGLVVKDD----------------------NGNDVGLLSERSII   62 (184)
T ss_dssp             CCBGGGTSB--TTCCEEET-TCBHHHHHHHHHHHTCCEEEEECT----------------------TSCEEEEEEHHHHH
T ss_pred             ccCHHHhcC--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCcEEEEEeHHHHH
Confidence            478999995  67999999 999999999999999999999985                      36899999999999


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      .++....     ......+++++|...   ++++.+++++.+|++.|. ++++++||+++                +++.
T Consensus        63 ~~~~~~~-----~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~g~~  118 (184)
T 1pvm_A           63 KRFIPRN-----KKPDEVPIRLVMRKP---IPKVKSDYDVKDVAAYLSENGLERCAVVDD----------------PGRV  118 (184)
T ss_dssp             HHTGGGC-----CCGGGSBGGGTSBSS---CCEEETTCBHHHHHHHHHHHTCSEEEEECT----------------TCCE
T ss_pred             HHHhhcc-----cCcccCCHHHHhCCC---CcEECCCCCHHHHHHHHHHcCCcEEEEEcC----------------CCeE
Confidence            9876421     112346799999754   889999999999999999 89999999863                2578


Q ss_pred             eeeecHHHHHHHHHH
Q 015178          166 YCWLTQEDLIRYFLN  180 (412)
Q Consensus       166 v~iITq~DIv~~l~~  180 (412)
                      +|+||..||++++.+
T Consensus       119 ~Givt~~dll~~~~~  133 (184)
T 1pvm_A          119 VGIVTLTDLSRYLSR  133 (184)
T ss_dssp             EEEEEHHHHTTTSCH
T ss_pred             EEEEEHHHHHHHHHh
Confidence            999999999987643

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.51  E-value=6e-14  Score=133.77  Aligned_cols=132  Identities=12%  Similarity=0.134  Sum_probs=103.1

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      ..+++|+|+|.  ++++++.+ ++|+.+|.++|.++++.++||+|.++                    .++++|||+..|
T Consensus        10 ~~~~~v~diMt--~~vvtv~~-~~tv~~~~~lm~~~~~~~~PVVd~~~--------------------~~~LvGiIt~~d   66 (250)
T 2d4z_A           10 KYNIQVGDIMV--RDVTSIAS-TSTYGDLLHVLRQTKLKFFPFVDTPD--------------------TNTLLGSIDRTE   66 (250)
T ss_dssp             CSSCBTTSSSB--SSCCCEET-TCBHHHHHHHHHHCCCSEEEEESCTT--------------------TCBEEEEEEHHH
T ss_pred             cCCCChHHhcC--CCCeEECC-CCCHHHHHHHHHhcCCCEEEEEecCC--------------------CCeEEEEEEHHH
Confidence            45789999995  68999999 99999999999999999999999532                    258999999999


Q ss_pred             HHHHhhhc---ccC--CC---------------------c------c---------------------------------
Q 015178           85 IISFLCKE---ENL--LN---------------------P------E---------------------------------   99 (412)
Q Consensus        85 il~~l~~~---~~l--~~---------------------~------~---------------------------------   99 (412)
                      |++.+...   ...  ..                     .      .                                 
T Consensus        67 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  146 (250)
T 2d4z_A           67 VEGLLQRRISAYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEP  146 (250)
T ss_dssp             HHHHHHHHHHTTSSSCCCCCCBCCC-------------------------------------------------------
T ss_pred             HHHHHHHhhhhhhhhhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccc
Confidence            99876521   000  00                     0      0                                 


Q ss_pred             -----------------------------------cccCCch--h-hhccCCCCceEecCCCCcHHHHHHHHh-cCCcee
Q 015178          100 -----------------------------------SALQDPV--S-VLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNL  140 (412)
Q Consensus       100 -----------------------------------~~l~~~V--~-dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl  140 (412)
                                                         ..+..+|  + .+|...   +++|.++++|.+|..+|. .|++++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~s---P~tv~~~tsL~~v~~LF~~lglr~l  223 (250)
T 2d4z_A          147 TQTSGIYQKKQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQS---PFQLVEGTSLQKTHTLFSLLGLDRA  223 (250)
T ss_dssp             --------------------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECC---SCCBCTTCBHHHHHHHHHHHTCSEE
T ss_pred             cccccccccccccccccCcccccccChhhhhhHHHHhcCceeccccccccCC---CeEECCCCcHHHHHHHHHHhCCeEE
Confidence                                               0022233  2 245544   789999999999999999 999999


Q ss_pred             eecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHH
Q 015178          141 VIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL  179 (412)
Q Consensus       141 ~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~  179 (412)
                      +|++                 .|+++||||..||++.+.
T Consensus       224 ~V~~-----------------~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          224 YVTS-----------------MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             EEEE-----------------TTEEEEEEEHHHHHHHHH
T ss_pred             EEEE-----------------CCEEEEEEEHHHHHHHHH
Confidence            9984                 368999999999999986

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.51  E-value=9.9e-14  Score=143.72  Aligned_cols=120  Identities=21%  Similarity=0.249  Sum_probs=101.9

Q ss_pred             CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhc-----CCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCH
Q 015178          190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQS-----HINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSA  264 (412)
Q Consensus       190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~-----~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~  264 (412)
                      ..++++  +|+++ ++++.+++++.+|++.|+++     ++  +.+||+|++++++|+                   ++.
T Consensus       154 ~~~v~~--iM~~~-~v~v~~~~tv~ea~~~~~~~~~~~~~~--~~ipVvd~~~~lvGi-------------------Vt~  209 (473)
T 2zy9_A          154 EDEAGG--LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETI--YYIYVVDEKGRLKGV-------------------LSL  209 (473)
T ss_dssp             TTBSTT--TCBSC-EEEECTTCBHHHHHHHHHHHGGGCSEE--EEEEEECTTSBEEEE-------------------EEH
T ss_pred             CCCHHH--hCCCC-ceEeCCCCcHHHHHHHHHhccCCcCce--eEEEEECCCCcEEEE-------------------EEH
Confidence            344554  78888 99999999999999999986     57  999999998999999                   566


Q ss_pred             hhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCc
Q 015178          265 GDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEA  344 (412)
Q Consensus       265 ~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~v  344 (412)
                      +|++..- .                                                           ..+++++|++++
T Consensus       210 ~Dll~~~-~-----------------------------------------------------------~~~v~dim~~~~  229 (473)
T 2zy9_A          210 RDLIVAD-P-----------------------------------------------------------RTRVAEIMNPKV  229 (473)
T ss_dssp             HHHHHSC-T-----------------------------------------------------------TSBGGGTSBSSC
T ss_pred             HHHhcCC-C-----------------------------------------------------------CCcHHHHhCCCC
Confidence            7765410 0                                                           012456788899


Q ss_pred             eEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          345 ILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       345 vt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +++++++++.+++++|.+++++++||||++|+++|+||..||++.+.+.
T Consensus       230 ~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          230 VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             CCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             eEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.49  E-value=6e-15  Score=157.99  Aligned_cols=171  Identities=16%  Similarity=0.180  Sum_probs=99.8

Q ss_pred             CCCcccccCCC--CCcEEEEeCCCcHHHHHHHHH-hcCCCCceeEEEcCCCcEeeeecCCccCCcchhH-HHhhhhcCHh
Q 015178          190 NQPINSLNIVD--DAGIFAIQYDEPAAFAIPLIA-QSHINQTSVALVDEEGRLVGDISPFSFNSCDETV-AAAMVTLSAG  265 (412)
Q Consensus       190 ~~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~-~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~-~~~~~~ls~~  265 (412)
                      ..++++  +|+  ++ +.++++++++.|+.+.|. ++++  +++||||++|+++|+||..||.+.-... ...-..++..
T Consensus       452 ~~~V~d--iM~p~~~-v~~v~~~~t~~e~~~~~~~~~~~--~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~  526 (632)
T 3org_A          452 EMTARE--IMHPIEG-EPHLFPDSEPQHIKGILEKFPNR--LVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGH  526 (632)
T ss_dssp             TSBHHH--HCBCTTT-SCCBCSSSCHHHHHHHHHHSTTC--CEECBBCTTCBBCCEESHHHHTTTTTTC-----------
T ss_pred             cCcHHH--HhhcCCC-ceEecCCCcHHHHHHHHHhcCCc--ceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccc
Confidence            345554  688  77 999999999999999999 7998  9999999999999997766665421000 0000000000


Q ss_pred             hhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCce
Q 015178          266 DLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAI  345 (412)
Q Consensus       266 Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vv  345 (412)
                      +.....    +..++.+         .++...+   +        .|.......   ..+..........+.++|+++++
T Consensus       527 ~~~~~~----~~~~l~~---------~~~~~~~---~--------~~~~~~~~~---~e~~~~~~~~~~~v~~iMt~~pi  579 (632)
T 3org_A          527 RTLVLL----DAADLSE---------NIEGLVD---E--------TPSGEHSSK---GKRTATVLEPTSSLVVPCDVSPI  579 (632)
T ss_dssp             -----------------------------------------------------------------------CCSCCCCCC
T ss_pred             cceecc----CHHHHHh---------hcccCCC---C--------Ccccchhhh---cccceEeeccccccchhhcCCCc
Confidence            000000    0000000         0000000   0        000000000   00000000111236789999999


Q ss_pred             EeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          346 LCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       346 t~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      |+++++++.+++++|.++++|++||| ++|+++||||++||++++.+.
T Consensus       580 tV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~~~  626 (632)
T 3org_A          580 VVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYSNS  626 (632)
T ss_dssp             EEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCCC-
T ss_pred             eecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHhhh
Confidence            99999999999999999999999999 568999999999998876544

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.49  E-value=3.6e-14  Score=148.79  Aligned_cols=125  Identities=14%  Similarity=0.127  Sum_probs=102.3

Q ss_pred             CCCcccccCCCCCcEEEEeCC-CcHHHHHHHHHhcCCCCceeEEEc-CCCcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178          190 NQPINSLNIVDDAGIFAIQYD-EPAAFAIPLIAQSHINQTSVALVD-EEGRLVGDISPFSFNSCDETVAAAMVTLSAGDL  267 (412)
Q Consensus       190 ~~~i~~L~i~~~~~v~tv~~~-~~~~~a~~~m~~~~i~~s~vpVVd-~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl  267 (412)
                      ..++++  +|+++ ++++.++ +++.+|+++|.++++  +++||+| ++|+++|+                   +|.+||
T Consensus       383 ~~~V~d--iM~~~-~vtv~~~~~tv~ea~~~m~~~~~--~~lpVvd~~~g~lvGi-------------------Vt~~Dl  438 (527)
T 3pc3_A          383 SLAIAE--LELPA-PPVILKSDATVGEAIALMKKHRV--DQLPVVDQDDGSVLGV-------------------VGQETL  438 (527)
T ss_dssp             TSBGGG--GCCCC-CSCCEETTCBHHHHHHHHHHHTC--SEEEEECTTTCCEEEE-------------------EEHHHH
T ss_pred             CCcHHH--hCcCC-CeEEcCCCCcHHHHHHHHHHcCC--CeEEEEECCCCEEEEE-------------------EEHHHH
Confidence            456665  68888 9999999 999999999999999  9999999 78999999                   668888


Q ss_pred             hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178          268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC  347 (412)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~  347 (412)
                      ++.+.                            ...             .             ....++.++|+++++++
T Consensus       439 l~~l~----------------------------~~~-------------~-------------~~~~~V~~im~~~~~~v  464 (527)
T 3pc3_A          439 ITQIV----------------------------SMN-------------R-------------QQSDPAIKALNKRVIRL  464 (527)
T ss_dssp             HHHHH----------------------------HHC-------------C-------------CTTSBGGGGEETTCCEE
T ss_pred             HHHHH----------------------------hcc-------------C-------------cCCCcHHHHhcCCCeEE
Confidence            76321                            000             0             00123567899999999


Q ss_pred             CCCCcHHHHHHHHHHcCCcEEEEEeCC----CcEEEEEehHHHHHHHHHHH
Q 015178          348 HPWSSLMAVIMQALARRVSYVWVVEED----CTLVGIVTFTGMLRVIRDRL  394 (412)
Q Consensus       348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~----~~lvGIVT~~DIL~~l~~~~  394 (412)
                      .+++++.+++++|.++++  +||||++    |+++||||++|||+++.++.
T Consensus       465 ~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          465 NESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             ETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             CCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            999999999999977775  6999985    89999999999999998754

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.49  E-value=1.4e-13  Score=127.07  Aligned_cols=121  Identities=19%  Similarity=0.170  Sum_probs=105.1

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhc---CCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRL---NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC   81 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~---~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt   81 (412)
                      +...+++++|.  ++++++++ +.|+.+|++.|.++   ++.++||+|.                      .++++|+|+
T Consensus        51 ~~~~~v~~iM~--~~~~~v~~-~~tv~eal~~~~~~~~~~~~~~~Vvd~----------------------~~~lvGivt  105 (205)
T 3kxr_A           51 YSENEIGRYTD--HQMLVLSD-KATVAQAQRFFRRIELDCNDNLFIVDE----------------------ADKYLGTVR  105 (205)
T ss_dssp             SCTTCGGGGCB--CCCCEEET-TCBHHHHHHHHHHCCCTTCCEEEEECT----------------------TCBEEEEEE
T ss_pred             CCcchHHhhcc--CceEEECC-CCcHHHHHHHHHhhCccCeeEEEEEcC----------------------CCeEEEEEE
Confidence            34668999995  67999999 99999999999998   8999999995                      368999999


Q ss_pred             hHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178           82 MVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF  160 (412)
Q Consensus        82 ~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~  160 (412)
                      ..|++..            ....+|+++|...   ++++.+++++.+|++.|. ++++++||+++               
T Consensus       106 ~~dll~~------------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~---------------  155 (205)
T 3kxr_A          106 RYDIFKH------------EPHEPLISLLSED---SRALTANTTLLDAAEAIEHSREIELPVIDD---------------  155 (205)
T ss_dssp             HHHHTTS------------CTTSBGGGGCCSS---CCCEETTSCHHHHHHHHHTSSCSEEEEECT---------------
T ss_pred             HHHHHhC------------CCcchHHHHhcCC---CeEECCCCCHHHHHHHHHhcCCCEEEEEcC---------------
Confidence            9998642            1246799999755   889999999999999999 89999999963               


Q ss_pred             CCCCeeeeecHHHHHHHHHHc
Q 015178          161 HNDSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       161 ~~~~~v~iITq~DIv~~l~~~  181 (412)
                       +|+++|+||..||++.+.+.
T Consensus       156 -~g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          156 -AGELIGRVTLRAATALVREH  175 (205)
T ss_dssp             -TSBEEEEEEHHHHHHHHHHH
T ss_pred             -CCeEEEEEEHHHHHHHHHHH
Confidence             36799999999999999764

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.42  E-value=3.4e-13  Score=140.92  Aligned_cols=114  Identities=19%  Similarity=0.192  Sum_probs=97.5

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC--CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE--EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR  275 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~  275 (412)
                      +|..+ ++++.+++++.+|+++|.++++  +++||+|+  +++++|+                   ++.+|++...+.  
T Consensus       118 ~m~~d-~v~l~~~~tv~ea~~~m~~~~~--s~~pVvd~g~~~~lvGi-------------------Vt~rDl~~~~~~--  173 (511)
T 3usb_A          118 GVISD-PFFLTPEHQVYDAEHLMGKYRI--SGVPVVNNLDERKLVGI-------------------ITNRDMRFIQDY--  173 (511)
T ss_dssp             CSSSS-CCCBCTTSBHHHHHHHHHHHCC--SEEEEESCTTTCBEEEE-------------------EEHHHHTTCCCS--
T ss_pred             ccccC-CEEECCCCCHHHHHHHHHHcCC--cEEEEEecCCCCEEEEE-------------------EEehHhhhhccC--
Confidence            46677 8999999999999999999999  99999998  8999999                   667776531000  


Q ss_pred             CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC-CceEeCCCCcHH
Q 015178          276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS-EAILCHPWSSLM  354 (412)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~-~vvt~~~~~sl~  354 (412)
                                                                               ..++.++|++ +++++++++++.
T Consensus       174 ---------------------------------------------------------~~~V~~vM~~~~~vtv~~~~~l~  196 (511)
T 3usb_A          174 ---------------------------------------------------------SIKISDVMTKEQLITAPVGTTLS  196 (511)
T ss_dssp             ---------------------------------------------------------SSBHHHHCCCCCCCCEETTCCHH
T ss_pred             ---------------------------------------------------------CCcHHHhcccCCCEEECCCCCHH
Confidence                                                                     0113457877 999999999999


Q ss_pred             HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      +++++|.+++++++||||++|+++|+||+.||++.+..
T Consensus       197 eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          197 EAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             HHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence            99999999999999999999999999999999998754

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.39  E-value=9.8e-13  Score=127.36  Aligned_cols=120  Identities=14%  Similarity=0.114  Sum_probs=104.5

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhc-----CCceEEEeecCCCCCcccccccccccccccCcCCeEEEEE
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRL-----NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKV   80 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~-----~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGiv   80 (412)
                      ...+++++|.  ++++++++ +.|+.+|++.|.++     ++.++||+|.                      +++++|+|
T Consensus       135 ~~~~v~~iM~--~~~~~v~~-~~tv~ea~~~~~~~~~~~~~~~~~pVvd~----------------------~~~lvGiv  189 (286)
T 2oux_A          135 EDETAGAIMT--TEFVSIVA-NQTVRSAMYVLKNQADMAETIYYVYVVDQ----------------------ENHLVGVI  189 (286)
T ss_dssp             CTTBHHHHCB--SCCCEECS-SSBHHHHHHHHHHHCSSCSCCSEEEEECT----------------------TCBEEEEE
T ss_pred             ChHHHHHhCC--CCceEECC-CCcHHHHHHHHHHcccCccceeEEEEEcC----------------------CCeEEEEE
Confidence            4678999995  57999999 99999999999998     8899999995                      36899999


Q ss_pred             ehHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcc
Q 015178           81 CMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKST  159 (412)
Q Consensus        81 t~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~  159 (412)
                      +..|++...            ...+|+++|...   ++++++++++.+|++.|. ++++++||+++              
T Consensus       190 t~~dll~~~------------~~~~v~~im~~~---~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~--------------  240 (286)
T 2oux_A          190 SLRDLIVND------------DDTLIADILNER---VISVHVGDDQEDVAQTIRDYDFLAVPVTDY--------------  240 (286)
T ss_dssp             EHHHHTTSC------------TTSBHHHHSBSC---CCCEETTSBHHHHHHHHHHHTCSEEEEECT--------------
T ss_pred             EHHHHHcCC------------CCCcHHHHcCCC---CeeecCCCCHHHHHHHHHHcCCcEEEEEcC--------------
Confidence            999987641            246899999755   889999999999999999 89999999863              


Q ss_pred             cCCCCeeeeecHHHHHHHHHHc
Q 015178          160 FHNDSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       160 ~~~~~~v~iITq~DIv~~l~~~  181 (412)
                        +|+++|+||..||++.+.+.
T Consensus       241 --~g~lvGiIT~~Dil~~i~~e  260 (286)
T 2oux_A          241 --DDHLLGIVTVDDIIDVIDDE  260 (286)
T ss_dssp             --TCBEEEEEEHHHHHHHHHHH
T ss_pred             --CCeEEEEEEHHHHHHHHHHH
Confidence              36799999999999998763

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.38  E-value=1.5e-12  Score=135.19  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=98.5

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEc--CCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVD--EEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR  275 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd--~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~  275 (412)
                      +|+.+ ++++.+++++.+|+++|.++++  +++||+|  ++++++|+                   +|.+|++...+.  
T Consensus        95 im~~~-~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~~~lvGi-------------------vt~~Dl~~~~~~--  150 (491)
T 1zfj_A           95 GVIID-PFFLTPEHKVSEAEELMQRYRI--SGVPIVETLANRKLVGI-------------------ITNRDMRFISDY--  150 (491)
T ss_dssp             TTSSS-CCCBCSSSBHHHHHHHHHHTTC--SEEEEESCTTTCBEEEE-------------------EEHHHHHHCSCS--
T ss_pred             cCcCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEEeCCCCEEEEE-------------------EEHHHHhhhccC--
Confidence            67777 9999999999999999999999  9999999  78999999                   667777542100  


Q ss_pred             CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC-CceEeCCCCcHH
Q 015178          276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS-EAILCHPWSSLM  354 (412)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~-~vvt~~~~~sl~  354 (412)
                                                                               ..++.++|++ +++++++++++.
T Consensus       151 ---------------------------------------------------------~~~v~~im~~~~~~~v~~~~~l~  173 (491)
T 1zfj_A          151 ---------------------------------------------------------NAPISEHMTSEHLVTAAVGTDLE  173 (491)
T ss_dssp             ---------------------------------------------------------SSBTTTSCCCSCCCCEETTCCHH
T ss_pred             ---------------------------------------------------------CCcHHHHcCCCCCEEECCCCCHH
Confidence                                                                     0123567887 899999999999


Q ss_pred             HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      +++++|.+++++++||||++|+++|+||+.||++.+.+
T Consensus       174 ~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          174 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             HHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            99999999999999999999999999999999998873

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.38  E-value=4.8e-14  Score=145.40  Aligned_cols=110  Identities=14%  Similarity=0.152  Sum_probs=0.0

Q ss_pred             CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178          199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR  275 (412)
Q Consensus       199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~  275 (412)
                      +..+ ++++.|+.++.||+++|.++++  +++||+|+   +|+|+||                   +|.+|++. .+.  
T Consensus       144 ~i~d-Pvtl~P~~Tv~da~~l~~~~~i--sgvpVvd~g~~~~kLvGI-------------------vT~RD~rf-~d~--  198 (556)
T 4af0_A          144 FITD-PLCLGPDATVGDVLEIKAKFGF--CGVPITETGEPDSKLLGI-------------------VTGRDVQF-QDA--  198 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCC-CeEcCCCCCHHHHHHHHHHhCC--CccccccccCcCCEEEEE-------------------Eecccccc-ccc--
Confidence            4456 8999999999999999999999  99999987   5799999                   55666532 100  


Q ss_pred             CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHH
Q 015178          276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMA  355 (412)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~  355 (412)
                                                                               ..++.++|+++++|++++.++.+
T Consensus       199 ---------------------------------------------------------~~~V~evMT~~lvt~~~~~~lee  221 (556)
T 4af0_A          199 ---------------------------------------------------------ETPIKSVMTTEVVTGSSPITLEK  221 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------ceEhhhhcccceEEecCCCCHHH
Confidence                                                                     00134679999999999999999


Q ss_pred             HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      +.+.|.++++.+|||||++++|+|+||++||++.-
T Consensus       222 A~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          222 ANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence            99999999999999999999999999999998763

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.37  E-value=1e-12  Score=137.72  Aligned_cols=130  Identities=18%  Similarity=0.189  Sum_probs=106.7

Q ss_pred             ccccchhccccCCCCeEEEecCC-chHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSS-STVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~-~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      |...+|+|+|.  ++++++++ + +|+.+|+++|.+++++++||+|.+                     +++++||||..
T Consensus       381 l~~~~V~diM~--~~~vtv~~-~~~tv~ea~~~m~~~~~~~lpVvd~~---------------------~g~lvGiVt~~  436 (527)
T 3pc3_A          381 WWSLAIAELEL--PAPPVILK-SDATVGEAIALMKKHRVDQLPVVDQD---------------------DGSVLGVVGQE  436 (527)
T ss_dssp             TTTSBGGGGCC--CCCSCCEE-TTCBHHHHHHHHHHHTCSEEEEECTT---------------------TCCEEEEEEHH
T ss_pred             ccCCcHHHhCc--CCCeEEcC-CCCcHHHHHHHHHHcCCCeEEEEECC---------------------CCEEEEEEEHH
Confidence            45688999995  67999999 8 999999999999999999999921                     36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||++.+.....      ....+|+++|...   +++++++++|.+++++|. +++  +||++++..            ..
T Consensus       437 Dll~~l~~~~~------~~~~~V~~im~~~---~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~------------~~  493 (527)
T 3pc3_A          437 TLITQIVSMNR------QQSDPAIKALNKR---VIRLNESEILGKLARVLEVDPS--VLILGKNPA------------GK  493 (527)
T ss_dssp             HHHHHHHHHCC------CTTSBGGGGEETT---CCEEETTSBHHHHHHHHTTCSE--EEEEEECSS------------SC
T ss_pred             HHHHHHHhccC------cCCCcHHHHhcCC---CeEECCCCcHHHHHHHHhhCCE--EEEEeCCcc------------cC
Confidence            99998875321      2357899999865   899999999999999998 554  577754210            13


Q ss_pred             CCeeeeecHHHHHHHHHHc
Q 015178          163 DSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~  181 (412)
                      ++++||||+.||++++.++
T Consensus       494 g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          494 VELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             EEEEEEEEHHHHHHHHHTC
T ss_pred             CeEEEEEEHHHHHHHHHhc
Confidence            6789999999999999864

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.35  E-value=2.6e-12  Score=123.63  Aligned_cols=120  Identities=17%  Similarity=0.135  Sum_probs=102.9

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhc-----CCceEEEeecCCCCCcccccccccccccccCcCCeEEEE
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRL-----NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGK   79 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~-----~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGi   79 (412)
                      +...+++++|.  ++++++++ +.|+.+|++.|.++     ++.++||+|.                      +++++|+
T Consensus       132 ~~~~~v~~iM~--~~~~~v~~-~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~----------------------~~~lvGi  186 (278)
T 2yvy_A          132 YEEDEAGGLMT--PEYVAVRE-GMTVEEVLRFLRRAAPDAETIYYIYVVDE----------------------KGRLKGV  186 (278)
T ss_dssp             SCTTBGGGTCB--SCCCEECT-TSBHHHHHHHHHHHTTTCSCSSEEEEECT----------------------TCBEEEE
T ss_pred             CCcchHHhhcC--CCceEECC-CCcHHHHHHHHHHccCCccceeEEEEECC----------------------CCCEEEE
Confidence            34678999995  57999999 99999999999997     8999999995                      3689999


Q ss_pred             EehHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCc
Q 015178           80 VCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKS  158 (412)
Q Consensus        80 vt~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~  158 (412)
                      |+..|++...            ...+|+++|...   ++++++++++.+|++.|. ++++++||+++             
T Consensus       187 vt~~dll~~~------------~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-------------  238 (278)
T 2yvy_A          187 LSLRDLIVAD------------PRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDE-------------  238 (278)
T ss_dssp             EEHHHHHHSC------------TTCBSTTTSBSS---CCCEETTSBHHHHHHHHHHHTCSEEEEECT-------------
T ss_pred             EEHHHHhcCC------------CCCcHHHHhCCC---CeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-------------
Confidence            9999998631            146799999755   889999999999999999 89999999863             


Q ss_pred             ccCCCCeeeeecHHHHHHHHHH
Q 015178          159 TFHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       159 ~~~~~~~v~iITq~DIv~~l~~  180 (412)
                         +|+++|+||..||++.+.+
T Consensus       239 ---~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          239 ---EGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             ---TSBEEEEEEHHHHHHHC--
T ss_pred             ---CCeEEEEEEHHHHHHHHHH
Confidence               3679999999999998764

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.35  E-value=7.5e-14  Score=145.68  Aligned_cols=115  Identities=14%  Similarity=0.089  Sum_probs=0.4

Q ss_pred             CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC---CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178          199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE---GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR  275 (412)
Q Consensus       199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~  275 (412)
                      |+++ ++++.+++++.+|+++|.++++  +++||+|++   |+++|+||                   .+|++....   
T Consensus       103 M~~~-~~~v~~~~tv~eal~~m~~~~~--s~~pVvd~~~~~g~lvGiVt-------------------~~Dl~~~~~---  157 (503)
T 1me8_A          103 FVVS-DSNVKPDQTFADVLAISQRTTH--NTVAVTDDGTPHGVLLGLVT-------------------QRDYPIDLT---  157 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccC-CeEECCCCcHHHHHHHHHHcCc--eEEEEEECCCcCCeEEEEEE-------------------HHHHHhhhc---
Confidence            7777 9999999999999999999999  999999987   89999954                   555543100   


Q ss_pred             CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC--ceEeCCCCcH
Q 015178          276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE--AILCHPWSSL  353 (412)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~--vvt~~~~~sl  353 (412)
                                 ..                                            ..++.++|+++  ++++++++++
T Consensus       158 -----------~~--------------------------------------------~~~V~diM~~~~~~~tv~~~~sl  182 (503)
T 1me8_A          158 -----------QT--------------------------------------------ETKVSDMMTPFSKLVTAHQDTKL  182 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------cc--------------------------------------------cCcHHHHhCCCCCCEEEcCCCcH
Confidence                       00                                            00134567776  9999999999


Q ss_pred             HHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       354 ~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      .+++++|.+++++++||||++|+++||||+.||++++...
T Consensus       183 ~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          183 SEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             ---------------------------------------C
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence            9999999999999999999999999999999999988753

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.33  E-value=3.2e-13  Score=140.63  Aligned_cols=112  Identities=18%  Similarity=0.160  Sum_probs=82.9

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|..+ ++++.+++++.+|+++|.++++  +++||+|++++++|+                   +|.+|++...+.    
T Consensus        94 ~m~~d-~v~v~~~~tv~ea~~~m~~~~~--s~~PVvd~~~~lvGi-------------------Vt~rDL~~~~~~----  147 (496)
T 4fxs_A           94 GVVTH-PVTVRPEQTIADVMELTHYHGF--AGFPVVTENNELVGI-------------------ITGRDVRFVTDL----  147 (496)
T ss_dssp             --CBC-CCCBCSSSBHHHHHHHHTSSCC--CEEEEECSSSBEEEE-------------------EEHHHHTTCCCT----
T ss_pred             ccccC-ceEECCCCCHHHHHHHHHHcCC--cEEEEEccCCEEEEE-------------------EEHHHHhhcccC----
Confidence            57777 9999999999999999999999  999999999999999                   567776521000    


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-C-CceEeCCCCcHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-S-EAILCHPWSSLMA  355 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~-~vvt~~~~~sl~~  355 (412)
                                                                             ..++.++|+ + +++++++++++.+
T Consensus       148 -------------------------------------------------------~~~v~diM~p~~~~vtv~~~~~l~e  172 (496)
T 4fxs_A          148 -------------------------------------------------------TKSVAAVMTPKERLATVKEGATGAE  172 (496)
T ss_dssp             -------------------------------------------------------TSBGGGTSEEGGGCCEEECC----C
T ss_pred             -------------------------------------------------------CCcHHHHhcCCCCCEEECCCCCHHH
Confidence                                                                   011346777 4 6999999999999


Q ss_pred             HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      +++.|.+++++++||||++|+++|+||+.||+++.
T Consensus       173 a~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          173 VQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             GGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             HHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence            99999999999999999999999999999999874

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.32  E-value=1.4e-13  Score=143.23  Aligned_cols=114  Identities=26%  Similarity=0.306  Sum_probs=5.5

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|.++ ++++++++++.+|+++|.++++  +++||+|++|+++|+||                   .+|++...+     
T Consensus       100 iM~~~-~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~lvGivt-------------------~~Dl~~~~~-----  152 (494)
T 1vrd_A          100 GIIYD-PITVTPDMTVKEAIDLMAEYKI--GGLPVVDEEGRLVGLLT-------------------NRDVRFEKN-----  152 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccC-CeEECCCCCHHHHHHHHHHcCc--eEEEEEcCCCEEEEEEE-------------------HHHHHhhcC-----
Confidence            57777 9999999999999999999999  99999998899999954                   555442100     


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeCCCCcHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCHPWSSLMA  355 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~~~~sl~~  355 (412)
                                .                                            ..++.++|++  +++++++++++.+
T Consensus       153 ----------~--------------------------------------------~~~v~~im~~~~~~~~v~~~~~l~e  178 (494)
T 1vrd_A          153 ----------L--------------------------------------------SKKIKDLMTPREKLIVAPPDISLEK  178 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------C--------------------------------------------CCcHHHHhCCCCCCeEECCCCCHHH
Confidence                      0                                            0012456777  8999999999999


Q ss_pred             HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ++++|.+++++++||||++|+++|+||+.||++++..
T Consensus       179 a~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          179 AKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             ------------------------------CHHHHTC
T ss_pred             HHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence            9999999999999999999999999999999998754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.30  E-value=2.2e-13  Score=141.61  Aligned_cols=112  Identities=16%  Similarity=0.244  Sum_probs=0.0

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|..+ ++++.+++++.+|+++|.++++  +++||+| +++++|+                   +|.+|++...+     
T Consensus        93 ~m~~~-~v~v~~~~tv~ea~~~m~~~~~--s~~pVvd-~g~lvGI-------------------Vt~rDl~~~~~-----  144 (490)
T 4avf_A           93 AIVRD-PVTVTPSTKIIELLQMAREYGF--SGFPVVE-QGELVGI-------------------VTGRDLRVKPN-----  144 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccC-ceEeCCCCcHHHHHHHHHHhCC--CEEEEEE-CCEEEEE-------------------EEhHHhhhccc-----
Confidence            56677 9999999999999999999999  9999999 7899999                   55555532100     


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-C-CceEeCCCCcHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-S-EAILCHPWSSLMA  355 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~-~vvt~~~~~sl~~  355 (412)
                                            .                                ..++.++|+ + +++++++++++.+
T Consensus       145 ----------------------~--------------------------------~~~V~~vMtp~~~~vtv~~~~~l~e  170 (490)
T 4avf_A          145 ----------------------A--------------------------------GDTVAAIMTPKDKLVTAREGTPLEE  170 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------c--------------------------------CCcHHHHhccCCCCEEECCCCcHHH
Confidence                                  0                                001345677 4 6999999999999


Q ss_pred             HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      ++++|.+++++++||||++|+++|+||+.||+++..
T Consensus       171 a~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          171 MKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ------------------------------------
T ss_pred             HHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence            999999999999999999999999999999999863

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.21  E-value=3.2e-13  Score=141.25  Aligned_cols=132  Identities=10%  Similarity=0.027  Sum_probs=73.4

Q ss_pred             cHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCC
Q 015178          170 TQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPF  246 (412)
Q Consensus       170 Tq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~  246 (412)
                      |..++.+++..-         +++++  +|.++ ++++.+++++.+|+++|.++++  +++||+|+   +|+++|+||..
T Consensus        96 t~e~~~~~v~~v---------~~~~~--im~~~-~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~~~~lvGiVt~~  161 (514)
T 1jcn_A           96 TPEFQANEVRKV---------KNFEQ--GFITD-PVVLSPSHTVGDVLEAKMRHGF--SGIPITETGTMGSKLVGIVTSR  161 (514)
T ss_dssp             CHHHHHHHHHHH---------HTCCT--TSCSS-CCCCCC-------------------CEESCC--------CCEECTT
T ss_pred             CHHHHHHHHHhh---------hhhhh--ccccC-CEEECCCCCHHHHHHHHHhcCC--CEEEEEeCCCcCCEEEEEEEHH
Confidence            556666665431         12332  57777 8899999999999999999999  99999998   58999996655


Q ss_pred             ccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcccccccc
Q 015178          247 SFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSA  326 (412)
Q Consensus       247 dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  326 (412)
                      ||.+                   ....             .            .                          
T Consensus       162 Dl~~-------------------~~~~-------------~------------~--------------------------  171 (514)
T 1jcn_A          162 DIDF-------------------LAEK-------------D------------H--------------------------  171 (514)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             HHHh-------------------hhhc-------------c------------C--------------------------
Confidence            5543                   1000             0            0                          


Q ss_pred             ccccccCccccccccC--CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          327 QSVRSRGYSARVVHRS--EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       327 ~~~~~~~~~a~~~m~~--~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                            ..++.++|++  +++++++++++.+++++|.+++++++||||++|+++|+||++||++++.
T Consensus       172 ------~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          172 ------TTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             ---------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             ------CCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence                  0012356777  8999999999999999999999999999999999999999999987654

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.21  E-value=4.4e-11  Score=123.81  Aligned_cols=119  Identities=17%  Similarity=0.149  Sum_probs=103.8

Q ss_pred             cccchhccccCCCCeEEEecCCchHHHHHHHHHhc-----CCceEEEeecCCCCCcccccccccccccccCcCCeEEEEE
Q 015178            6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRL-----NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKV   80 (412)
Q Consensus         6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~-----~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGiv   80 (412)
                      ...+++++|.  ++++++++ +.|+.+|++.|.++     ++.++||+|.                      +++++|+|
T Consensus       153 ~~~~v~~iM~--~~~v~v~~-~~tv~ea~~~~~~~~~~~~~~~~ipVvd~----------------------~~~lvGiV  207 (473)
T 2zy9_A          153 EEDEAGGLMT--PEYVAVRE-GMTVEEVLRFLRRAAPDAETIYYIYVVDE----------------------KGRLKGVL  207 (473)
T ss_dssp             CTTBSTTTCB--SCEEEECT-TCBHHHHHHHHHHHGGGCSEEEEEEEECT----------------------TSBEEEEE
T ss_pred             CCCCHHHhCC--CCceEeCC-CCcHHHHHHHHHhccCCcCceeEEEEECC----------------------CCcEEEEE
Confidence            4678999995  58999999 99999999999996     6899999995                      36899999


Q ss_pred             ehHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcc
Q 015178           81 CMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKST  159 (412)
Q Consensus        81 t~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~  159 (412)
                      +..|++..  .          .+.+|+++|...   ++++++++++.+|++.|. ++++++||+++              
T Consensus       208 t~~Dll~~--~----------~~~~v~dim~~~---~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe--------------  258 (473)
T 2zy9_A          208 SLRDLIVA--D----------PRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDE--------------  258 (473)
T ss_dssp             EHHHHHHS--C----------TTSBGGGTSBSS---CCCEESSSBHHHHHHHHHHHTCSEEEEECT--------------
T ss_pred             EHHHHhcC--C----------CCCcHHHHhCCC---CeEEeCCCcHHHHHHHHHhcCCcEEEEEcC--------------
Confidence            99999863  1          146899999755   899999999999999999 89999999963              


Q ss_pred             cCCCCeeeeecHHHHHHHHHH
Q 015178          160 FHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       160 ~~~~~~v~iITq~DIv~~l~~  180 (412)
                        +++.+|+||..|+++.+.+
T Consensus       259 --~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          259 --EGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             --TSBEEEEEEHHHHHHHHHH
T ss_pred             --CCEEEEEEehHhhHHHHHH
Confidence              3679999999999998865

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.19  E-value=2e-11  Score=130.62  Aligned_cols=123  Identities=11%  Similarity=0.054  Sum_probs=95.3

Q ss_pred             CCchhhhcc--CCCCceEecCCCCcHHHHHHHHh--cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHH
Q 015178          103 QDPVSVLLP--EASGVIRHLEPSASLLEAVDLLL--GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF  178 (412)
Q Consensus       103 ~~~V~dvm~--~~~~~~~tV~~~~sL~~ai~lm~--~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l  178 (412)
                      +.+|+++|.  .+   +.++++++++.++.+.|.  ++.+++||+++                +++++|+||..|+++.+
T Consensus       452 ~~~V~diM~p~~~---v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~----------------~~~lvGiVt~~DL~~~l  512 (632)
T 3org_A          452 EMTAREIMHPIEG---EPHLFPDSEPQHIKGILEKFPNRLVFPVIDA----------------NGYLLGAISRKEIVDRL  512 (632)
T ss_dssp             TSBHHHHCBCTTT---SCCBCSSSCHHHHHHHHHHSTTCCEECBBCT----------------TCBBCCEESHHHHTTTT
T ss_pred             cCcHHHHhhcCCC---ceEecCCCcHHHHHHHHHhcCCcceEEEEec----------------CCeEEEEEEHHHHHHHH
Confidence            467999998  44   889999999999999998  57889999864                25688999999999876


Q ss_pred             HHccCc----------------------CCCCCC---------------------CCcccccCCCCCcEEEEeCCCcHHH
Q 015178          179 LNCIGL----------------------LSPTPN---------------------QPINSLNIVDDAGIFAIQYDEPAAF  215 (412)
Q Consensus       179 ~~~~~~----------------------l~~l~~---------------------~~i~~L~i~~~~~v~tv~~~~~~~~  215 (412)
                      .+....                      +..+..                     .++++  +|+++ ++++++++++.+
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~--iMt~~-pitV~~~~~l~e  589 (632)
T 3org_A          513 QHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV--PCDVS-PIVVTSYSLVRQ  589 (632)
T ss_dssp             TTC-------------------------------------------------------CC--SCCCC-CCEEETTCBHHH
T ss_pred             HHHhhhcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch--hhcCC-CceecCCCcHHH
Confidence            432100                      000000                     01333  79999 999999999999


Q ss_pred             HHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178          216 AIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS  250 (412)
Q Consensus       216 a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~  250 (412)
                      |+++|.++++  +.+||+ ++|+++|+||.+||.+
T Consensus       590 a~~~M~~~~i--~~lpVv-e~G~lvGIVT~~Dll~  621 (632)
T 3org_A          590 LHFLFVMLMP--SMIYVT-ERGKLVGIVEREDVAY  621 (632)
T ss_dssp             HHHHHHHTCC--SEEEEE-ETTEEEEEEEGGGTEE
T ss_pred             HHHHHHhcCC--CEEEEE-ECCEEEEEEehhhHHH
Confidence            9999999999  999999 6799999977666654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.18  E-value=2.6e-10  Score=119.11  Aligned_cols=157  Identities=14%  Similarity=0.045  Sum_probs=116.3

Q ss_pred             CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178           18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN   97 (412)
Q Consensus        18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~   97 (412)
                      ++++++++ ++|+.+|+++|.+++++++||+|...                    +++++|||+.+|+..   .      
T Consensus       121 ~d~v~l~~-~~tv~ea~~~m~~~~~s~~pVvd~g~--------------------~~~lvGiVt~rDl~~---~------  170 (511)
T 3usb_A          121 SDPFFLTP-EHQVYDAEHLMGKYRISGVPVVNNLD--------------------ERKLVGIITNRDMRF---I------  170 (511)
T ss_dssp             SSCCCBCT-TSBHHHHHHHHHHHCCSEEEEESCTT--------------------TCBEEEEEEHHHHTT---C------
T ss_pred             cCCEEECC-CCCHHHHHHHHHHcCCcEEEEEecCC--------------------CCEEEEEEEehHhhh---h------
Confidence            46889999 99999999999999999999999510                    268999999999854   1      


Q ss_pred             cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178           98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR  176 (412)
Q Consensus        98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~  176 (412)
                        .....+|+++|+.  .+++++++++++.+++++|. ++++++||+++                +++++|+||..||++
T Consensus       171 --~~~~~~V~~vM~~--~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe----------------~g~l~GiIT~~Dil~  230 (511)
T 3usb_A          171 --QDYSIKISDVMTK--EQLITAPVGTTLSEAEKILQKYKIEKLPLVDN----------------NGVLQGLITIKDIEK  230 (511)
T ss_dssp             --CCSSSBHHHHCCC--CCCCCEETTCCHHHHHHHHHHHTCSEEEEECT----------------TSBEEEEEEHHHHHH
T ss_pred             --ccCCCcHHHhccc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC----------------CCCEeeeccHHHHHH
Confidence              1135789999985  23899999999999999999 99999999974                367899999999999


Q ss_pred             HHHHccCcCCCCCCCCcccccCCCCCc-EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC
Q 015178          177 YFLNCIGLLSPTPNQPINSLNIVDDAG-IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG  237 (412)
Q Consensus       177 ~l~~~~~~l~~l~~~~i~~L~i~~~~~-v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g  237 (412)
                      .+..... .     +.     .+.+-. -..+.......+.++.+.+.++  ..+.|-..++
T Consensus       231 ~~~~p~a-~-----~D-----~~~rl~V~aavg~~~d~~era~aLveaGv--d~I~Id~a~g  279 (511)
T 3usb_A          231 VIEFPNS-A-----KD-----KQGRLLVGAAVGVTADAMTRIDALVKASV--DAIVLDTAHG  279 (511)
T ss_dssp             HHHCTTC-C-----BC-----TTSCBCCEEEECSSTTHHHHHHHHHHTTC--SEEEEECSCT
T ss_pred             hhhcccc-h-----hh-----hccceeeeeeeeeccchHHHHHHHHhhcc--ceEEeccccc
Confidence            8853111 0     00     111110 2334434445666777788888  7776654443

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.16  E-value=7.1e-11  Score=90.52  Aligned_cols=66  Identities=15%  Similarity=0.132  Sum_probs=55.3

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++|+.+|+++|.+++++++||.|                       +++++||||.+||++.+...+     
T Consensus         1 k~vtv~p-~~tv~ea~~~M~~~~i~~~~V~d-----------------------~~~lvGIvT~~Di~~~~~~~~-----   51 (70)
T 3ghd_A            1 KAIVVQP-KDTVDRVAKILSRNKAGSAVVME-----------------------GDEILGVVTERDILDKVVAKG-----   51 (70)
T ss_dssp             CEEEECT-TCBHHHHHHHHHHTTCSEEEEEE-----------------------TTEEEEEEEHHHHHHHTTTTT-----
T ss_pred             CCEEECC-CCcHHHHHHHHHHcCCCEEEEEE-----------------------CCEEEEEEEHHHHHHHHHhcC-----
Confidence            4799999 99999999999999999999998                       368999999999998765421     


Q ss_pred             ccccCCchhhhccCC
Q 015178           99 ESALQDPVSVLLPEA  113 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~  113 (412)
                      ....+.||+++|+.+
T Consensus        52 ~~~~~~~V~~iMt~~   66 (70)
T 3ghd_A           52 KNPKEVKVEEIMTKN   66 (70)
T ss_dssp             CCGGGCBGGGTCEEC
T ss_pred             CCcccCCHHHhcCCC
Confidence            122357899999855

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.15  E-value=1.4e-11  Score=128.41  Aligned_cols=171  Identities=13%  Similarity=0.056  Sum_probs=26.3

Q ss_pred             cccchhcc-ccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            6 LSVGVSDL-CIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         6 ~~~~v~dl-~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      ...+..++ |.  ++++++++ ++|+.+|+++|.+++++++||+|.+..                   .++++|||+..|
T Consensus        94 ~~V~~~e~gM~--~~~~~v~~-~~tv~eal~~m~~~~~s~~pVvd~~~~-------------------~g~lvGiVt~~D  151 (503)
T 1me8_A           94 HAVKNFKAGFV--VSDSNVKP-DQTFADVLAISQRTTHNTVAVTDDGTP-------------------HGVLLGLVTQRD  151 (503)
T ss_dssp             HHHHTTTC------------------------------------------------------------------------
T ss_pred             hhhhhcccCcc--cCCeEECC-CCcHHHHHHHHHHcCceEEEEEECCCc-------------------CCeEEEEEEHHH
Confidence            33445555 64  57999999 999999999999999999999995310                   168999999999


Q ss_pred             HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178           85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND  163 (412)
Q Consensus        85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~  163 (412)
                      |...  .        .....+|+++|... ..++++++++++.+|+++|. ++++++||+++                ++
T Consensus       152 l~~~--~--------~~~~~~V~diM~~~-~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe----------------~g  204 (503)
T 1me8_A          152 YPID--L--------TQTETKVSDMMTPF-SKLVTAHQDTKLSEANKIIWEKKLNALPIIDD----------------DQ  204 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhh--h--------ccccCcHHHHhCCC-CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC----------------CC
Confidence            9864  1        11356899999732 23789999999999999999 89999999864                35


Q ss_pred             CeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCc
Q 015178          164 SEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGR  238 (412)
Q Consensus       164 ~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~  238 (412)
                      +++|+||..||++.+......     ......  ++.   -..+.. ....+.++.|.+.++  ..+.|--.+|.
T Consensus       205 ~lvGiIT~~Dil~~~~~~~~~-----~d~~~~--l~v---~a~v~~-~~~~e~~~~l~e~gv--~~l~Vd~~~g~  266 (503)
T 1me8_A          205 HLRYIVFRKDYDRSQVCHNEL-----VDSQKR--YLV---GAGINT-RDFRERVPALVEAGA--DVLCIDSSDGF  266 (503)
T ss_dssp             -----------------CCCC-----BCTTSC--BCC---EEEECS-SSHHHHHHHHHHHTC--SEEEECCSCCC
T ss_pred             eEEEEEEecHHHHhhhcccch-----hccccc--ccc---ccccCc-hhHHHHHHHHHhhhc--cceEEecccCc
Confidence            788999999999987542111     111111  121   133445 666778999999999  77666333343

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.10  E-value=1e-09  Score=113.89  Aligned_cols=120  Identities=13%  Similarity=0.073  Sum_probs=100.7

Q ss_pred             chhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH
Q 015178            9 GVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF   88 (412)
Q Consensus         9 ~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~   88 (412)
                      .+.++|.  ++++++++ ++|+.+|++.|.+++++++||+|...                    +++++|+|+..|++..
T Consensus        91 ~~~~im~--~~~~~v~~-~~tv~ea~~~m~~~~~~~~pVvd~~~--------------------~~~lvGivt~~Dl~~~  147 (491)
T 1zfj_A           91 RSENGVI--IDPFFLTP-EHKVSEAEELMQRYRISGVPIVETLA--------------------NRKLVGIITNRDMRFI  147 (491)
T ss_dssp             HHTTTTS--SSCCCBCS-SSBHHHHHHHHHHTTCSEEEEESCTT--------------------TCBEEEEEEHHHHHHC
T ss_pred             hHHhcCc--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEEeCC--------------------CCEEEEEEEHHHHhhh
Confidence            3578885  57899999 99999999999999999999998200                    3689999999999853


Q ss_pred             hhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178           89 LCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC  167 (412)
Q Consensus        89 l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~  167 (412)
                       .          ..+.+++++|..  .+++++++++++.++++.|. ++++++||+++                .++++|
T Consensus       148 -~----------~~~~~v~~im~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~----------------~g~lvG  198 (491)
T 1zfj_A          148 -S----------DYNAPISEHMTS--EHLVTAAVGTDLETAERILHEHRIEKLPLVDN----------------SGRLSG  198 (491)
T ss_dssp             -S----------CSSSBTTTSCCC--SCCCCEETTCCHHHHHHHHHHTTCSEEEEECT----------------TSBEEE
T ss_pred             -c----------cCCCcHHHHcCC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----------------CCcEEE
Confidence             1          125789999974  13789999999999999999 99999999863                367899


Q ss_pred             eecHHHHHHHHHH
Q 015178          168 WLTQEDLIRYFLN  180 (412)
Q Consensus       168 iITq~DIv~~l~~  180 (412)
                      +||..||++.+.+
T Consensus       199 ivt~~Dil~~~~~  211 (491)
T 1zfj_A          199 LITIKDIEKVIEF  211 (491)
T ss_dssp             EEEHHHHHHHHHC
T ss_pred             EEEHHHHHHHHhc
Confidence            9999999999864

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.09  E-value=9.5e-12  Score=129.22  Aligned_cols=110  Identities=20%  Similarity=0.334  Sum_probs=0.4

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|..+ ++++.+++++.+++++|.++++  +++||+|+ ++++|+                   ++.+|++.  +.    
T Consensus        98 ~m~~~-~~~v~~~~tv~ea~~~~~~~~~--~~~pVvd~-~~lvGi-------------------vt~~Dl~~--~~----  148 (486)
T 2cu0_A           98 LIVED-VITIAPDETVDFALFLMEKHGI--DGLPVVED-EKVVGI-------------------ITKKDIAA--RE----  148 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccC-ceEECCCCCHHHHHHHHHHcCC--cEEEEEEC-CEEEEE-------------------EEHHHhcc--CC----
Confidence            46677 9999999999999999999998  99999998 899999                   45555532  00    


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                          +                                   .++.++|+++++++++++++.+++
T Consensus       149 --------------------~-----------------------------------~~v~~im~~~~~~v~~~~~l~eal  173 (486)
T 2cu0_A          149 --------------------G-----------------------------------KLVKELMTKEVITVPESIEVEEAL  173 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------C-----------------------------------CCHHHHccCCCeEECCcCcHHHHH
Confidence                                0                                   002346777899999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      +.|.+++++++||||++|+++|+||+.||++.+.
T Consensus       174 ~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          174 KIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             ---------------------------------C
T ss_pred             HHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence            9999999999999999999999999999999853

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.99  E-value=1.9e-10  Score=119.47  Aligned_cols=119  Identities=16%  Similarity=0.147  Sum_probs=6.4

Q ss_pred             chhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH
Q 015178            9 GVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF   88 (412)
Q Consensus         9 ~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~   88 (412)
                      ++.++|.  ++++++++ ++|+.+|++.|.+++++++||+|.                      +++++|+||..||...
T Consensus        96 ~~~~iM~--~~~~~v~~-~~tv~ea~~~m~~~~~~~~pVvd~----------------------~~~lvGivt~~Dl~~~  150 (494)
T 1vrd_A           96 KTENGII--YDPITVTP-DMTVKEAIDLMAEYKIGGLPVVDE----------------------EGRLVGLLTNRDVRFE  150 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCc--cCCeEECC-CCCHHHHHHHHHHcCceEEEEEcC----------------------CCEEEEEEEHHHHHhh
Confidence            3677774  57899999 999999999999999999999995                      3689999999999852


Q ss_pred             hhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178           89 LCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC  167 (412)
Q Consensus        89 l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~  167 (412)
                        .         ....+|+++|+.. .+++++++++++.+++++|. ++++++||+++                +++++|
T Consensus       151 --~---------~~~~~v~~im~~~-~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~----------------~g~lvG  202 (494)
T 1vrd_A          151 --K---------NLSKKIKDLMTPR-EKLIVAPPDISLEKAKEILHQHRIEKLPLVSK----------------DNKLVG  202 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --c---------CCCCcHHHHhCCC-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC----------------CCeEEE
Confidence              1         1246899999851 13889999999999999999 89999999864                367889


Q ss_pred             eecHHHHHHHHHH
Q 015178          168 WLTQEDLIRYFLN  180 (412)
Q Consensus       168 iITq~DIv~~l~~  180 (412)
                      +||..|+++.+..
T Consensus       203 iIt~~Dll~~~~~  215 (494)
T 1vrd_A          203 LITIKDIMSVIEH  215 (494)
T ss_dssp             ------CHHHHTC
T ss_pred             EEEHHHHHhhhcc
Confidence            9999999998753

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.97  E-value=3.5e-10  Score=117.70  Aligned_cols=114  Identities=11%  Similarity=0.186  Sum_probs=83.2

Q ss_pred             hhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCc
Q 015178          106 VSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGL  184 (412)
Q Consensus       106 V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~  184 (412)
                      +.++|..+   ++++++++++.+++++|. +++.++||+++                +++++||||..|+..        
T Consensus        91 ~~~~m~~d---~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~----------------~~~lvGiVt~rDL~~--------  143 (496)
T 4fxs_A           91 FEAGVVTH---PVTVRPEQTIADVMELTHYHGFAGFPVVTE----------------NNELVGIITGRDVRF--------  143 (496)
T ss_dssp             CCC--CBC---CCCBCSSSBHHHHHHHHTSSCCCEEEEECS----------------SSBEEEEEEHHHHTT--------
T ss_pred             cccccccC---ceEECCCCCHHHHHHHHHHcCCcEEEEEcc----------------CCEEEEEEEHHHHhh--------
Confidence            45566644   789999999999999999 89999999863                367899999999951        


Q ss_pred             CCCCCCCCcccccCCC-CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCc
Q 015178          185 LSPTPNQPINSLNIVD-DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSC  251 (412)
Q Consensus       185 l~~l~~~~i~~L~i~~-~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~  251 (412)
                       ..-...++++  +|+ +++++++++++++.+|+++|.++++  ..+||||++|+++|+||..||.+.
T Consensus       144 -~~~~~~~v~d--iM~p~~~~vtv~~~~~l~ea~~~m~~~~i--~~lpVVDe~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          144 -VTDLTKSVAA--VMTPKERLATVKEGATGAEVQEKMHKARV--EKILVVNDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             -CCCTTSBGGG--TSEEGGGCCEEECC----CGGGTCC---C--CCEEEECTTSBCCEEECCC-----
T ss_pred             -cccCCCcHHH--HhcCCCCCEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEeehHhHHHHh
Confidence             1123456665  687 4339999999999999999999999  999999999999999999999764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.94  E-value=1.6e-09  Score=82.88  Aligned_cols=48  Identities=21%  Similarity=0.239  Sum_probs=44.7

Q ss_pred             ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          344 AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       344 vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      +++++|++++.+|+++|.+++++++||+|+ |+++||||.+||++.+..
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~Di~~~~~~   49 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVA   49 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            689999999999999999999999999986 799999999999987653

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.91  E-value=6e-10  Score=115.82  Aligned_cols=117  Identities=13%  Similarity=0.059  Sum_probs=2.6

Q ss_pred             chhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH
Q 015178            9 GVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF   88 (412)
Q Consensus         9 ~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~   88 (412)
                      ++.++|.  .+++++++ ++|+.+|+++|.+++++.+||+| +                      ++++||||.+||...
T Consensus        89 ~~~~~m~--~~~v~v~~-~~tv~ea~~~m~~~~~s~~pVvd-~----------------------g~lvGIVt~rDl~~~  142 (490)
T 4avf_A           89 KHETAIV--RDPVTVTP-STKIIELLQMAREYGFSGFPVVE-Q----------------------GELVGIVTGRDLRVK  142 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCcc--cCceEeCC-CCcHHHHHHHHHHhCCCEEEEEE-C----------------------CEEEEEEEhHHhhhc
Confidence            4677775  56889999 99999999999999999999999 2                      589999999998421


Q ss_pred             hhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178           89 LCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC  167 (412)
Q Consensus        89 l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~  167 (412)
                       .          ....+|+++|+.. .+++++++++++.+|+++|. ++++++||+++                +++++|
T Consensus       143 -~----------~~~~~V~~vMtp~-~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe----------------~g~lvG  194 (490)
T 4avf_A          143 -P----------NAGDTVAAIMTPK-DKLVTAREGTPLEEMKAKLYENRIEKMLVVDE----------------NFYLRG  194 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -c----------ccCCcHHHHhccC-CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCcEEE
Confidence             1          1247899999721 13899999999999999999 99999999864                367889


Q ss_pred             eecHHHHHHHHH
Q 015178          168 WLTQEDLIRYFL  179 (412)
Q Consensus       168 iITq~DIv~~l~  179 (412)
                      +||..||++...
T Consensus       195 iIT~~Dil~~~~  206 (490)
T 4avf_A          195 LVTFRDIEKAKT  206 (490)
T ss_dssp             ------------
T ss_pred             EEehHHhhhhcc
Confidence            999999999764

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.87  E-value=2.1e-10  Score=118.40  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=0.0

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +.+++.+ +.||.+|+++|.+++|+++||++....                   .++++||||.+|+ +|  ++      
T Consensus       147 dPvtl~P-~~Tv~da~~l~~~~~isgvpVvd~g~~-------------------~~kLvGIvT~RD~-rf--~d------  197 (556)
T 4af0_A          147 DPLCLGP-DATVGDVLEIKAKFGFCGVPITETGEP-------------------DSKLLGIVTGRDV-QF--QD------  197 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCC-CCCHHHHHHHHHHhCCCccccccccCc-------------------CCEEEEEEecccc-cc--cc------
Confidence            4789999 999999999999999999999985321                   4799999999995 44  11      


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                         ..++|+++|+..   ++++.++.++.+|.++|. +++.++||+++                +++++|+||..|+++.
T Consensus       198 ---~~~~V~evMT~~---lvt~~~~~~leeA~~iL~~~kieklpVVd~----------------~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          198 ---AETPIKSVMTTE---VVTGSSPITLEKANSLLRETKKGKLPIVDS----------------NGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---cceEhhhhcccc---eEEecCCCCHHHHHHHHHHccccceeEEcc----------------CCcEEEEEEechhhhh
Confidence               247899999965   999999999999999999 89999999874                3678899999999886


Q ss_pred             H
Q 015178          178 F  178 (412)
Q Consensus       178 l  178 (412)
                      -
T Consensus       256 ~  256 (556)
T 4af0_A          256 Q  256 (556)
T ss_dssp             -
T ss_pred             h
Confidence            4

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.79  E-value=4.4e-10  Score=117.42  Aligned_cols=118  Identities=11%  Similarity=0.078  Sum_probs=66.4

Q ss_pred             hhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCc
Q 015178          106 VSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGL  184 (412)
Q Consensus       106 V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~  184 (412)
                      +.++|...   ++++.+++++.+|+++|. ++++++||++++.             .+++++|+||..|+.+...     
T Consensus       110 ~~~im~~~---~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-------------~~~~lvGiVt~~Dl~~~~~-----  168 (514)
T 1jcn_A          110 FEQGFITD---PVVLSPSHTVGDVLEAKMRHGFSGIPITETGT-------------MGSKLVGIVTSRDIDFLAE-----  168 (514)
T ss_dssp             CCTTSCSS---CCCCCC-----------------CEESCC---------------------CCEECTTTTC---------
T ss_pred             hhhccccC---CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCC-------------cCCEEEEEEEHHHHHhhhh-----
Confidence            56777644   789999999999999999 8999999986410             0357889999999975311     


Q ss_pred             CCCCCCCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCc
Q 015178          185 LSPTPNQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSC  251 (412)
Q Consensus       185 l~~l~~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~  251 (412)
                        .....++++  +|++  + ++++.+++++.+|+++|.++++  ..+||||++|+++|+||..||.+.
T Consensus       169 --~~~~~~v~~--vm~~~~~-~~tv~~~~~l~ea~~~m~~~~~--~~lpVVd~~g~lvGiIt~~Dll~~  230 (514)
T 1jcn_A          169 --KDHTTLLSE--VMTPRIE-LVVAPAGVTLKEANEILQRSKK--GKLPIVNDCDELVAIIARTDLKKN  230 (514)
T ss_dssp             ----------------CCBC-CCCEETTCCSTTTTTHHHHHTC--SCCCEESSSSCCC----CCCCSSC
T ss_pred             --ccCCCCHHH--HhCCCCC-CeEECCCCCHHHHHHHHHHcCC--CcccEECCCCeEEEEEEHHHHHHH
Confidence              012345655  6877  7 9999999999999999999999  999999999999999999999763

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.67  E-value=1e-08  Score=106.31  Aligned_cols=153  Identities=14%  Similarity=0.133  Sum_probs=19.1

Q ss_pred             hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178           10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL   89 (412)
Q Consensus        10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l   89 (412)
                      +.++|.  .+++++++ ++|+.+|++.|.+++++.+||++.                       ++++|+|+..|++.  
T Consensus        95 ~~~~m~--~~~~~v~~-~~tv~ea~~~~~~~~~~~~pVvd~-----------------------~~lvGivt~~Dl~~--  146 (486)
T 2cu0_A           95 AERLIV--EDVITIAP-DETVDFALFLMEKHGIDGLPVVED-----------------------EKVVGIITKKDIAA--  146 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhccc--cCceEECC-CCCHHHHHHHHHHcCCcEEEEEEC-----------------------CEEEEEEEHHHhcc--
Confidence            355664  57899999 999999999999999999999984                       47999999999875  


Q ss_pred             hhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178           90 CKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW  168 (412)
Q Consensus        90 ~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i  168 (412)
                       .          ...+++++|...   ++++.+++++.+++++|. ++++++||+++                .++++|+
T Consensus       147 -~----------~~~~v~~im~~~---~~~v~~~~~l~eal~~m~~~~~~~lpVVde----------------~g~lvGi  196 (486)
T 2cu0_A          147 -R----------EGKLVKELMTKE---VITVPESIEVEEALKIMIENRIDRLPVVDE----------------RGKLVGL  196 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -C----------CCCCHHHHccCC---CeEECCcCcHHHHHHHHHHcCCCEEEEEec----------------CCeEEEE
Confidence             1          146799999754   889999999999999999 89999999863                3578899


Q ss_pred             ecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC
Q 015178          169 LTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE  235 (412)
Q Consensus       169 ITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~  235 (412)
                      ||..||++.+..  .  ... ...-..  ++..   -.+..+ . .+.+..|.+.++  ..+ |+|.
T Consensus       197 iT~~Dil~~~~~--~--~~~-~~~~g~--~~v~---~~~~~~-~-~~~a~~l~~~gv--d~l-vvdt  248 (486)
T 2cu0_A          197 ITMSDLVARKKY--K--NAV-RDENGE--LLVA---AAVSPF-D-IKRAIELDKAGV--DVI-VVDT  248 (486)
T ss_dssp             ----------CC--T--TCC-BCTTSC--BCCE---EEECTT-C-HHHHHHHHHTTC--SEE-EEEC
T ss_pred             EEHHHHHHhhhc--c--ccc-cccCCc--eeec---ceechh-h-HHHHHHHHHhcC--Cce-EEEe
Confidence            999999998531  0  000 000000  1111   123333 3 667888989998  775 5654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	1e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	4e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	8e-04

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 18/115 (15%), Positives = 43/115 (37%)

Query: 276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYS 335
                V +      +  +     + E    +   S  D  +   E +  +     ++   
Sbjct: 26  RTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQ 85

Query: 336 ARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390
            R  +    + C+   +L A+I + +   V  + VV+E   + GIV+ + +L+ +
Sbjct: 86  HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 140

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 12/54 (22%), Positives = 20/54 (37%)

Query: 339 VHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392
                 +  +  S     I   + R    + VV+ +   VGIVT    L + +D
Sbjct: 79  YMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 132

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 16/140 (11%), Positives = 49/140 (35%), Gaps = 3/140 (2%)

Query: 254 TVAAAMVTLSAGDLMAYMDCGR-PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCP 312
            V       +A   +   +    P  D    +   ++E  ++   E++         +  
Sbjct: 16  IVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASS 75

Query: 313 DSSSSDDESSTGSAQSVRSRGYSARV--VHRSEAILCHPWSSLMAVIMQALARRVSYVWV 370
           +     +   T   +    +  +  V  +   + I+  P  ++  V ++     +  + V
Sbjct: 76  EEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPV 135

Query: 371 VEEDCTLVGIVTFTGMLRVI 390
           +  +  L+G++    +L+V+
Sbjct: 136 IRGEGDLIGLIRDFDLLKVL 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.85
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.85
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.84
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.83
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.82
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.81
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.81
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.81
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.81
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.81
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.8
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.8
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.79
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.79
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.79
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.78
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.78
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.78
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.78
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.77
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.76
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.75
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.75
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.75
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.74
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.74
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.74
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.74
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.74
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.73
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.73
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.72
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.71
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.71
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.7
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.69
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.69
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.68
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.68
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.68
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.65
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.65
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.64
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.62
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.62
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.61
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.61
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.59
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.58
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.58
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.48

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=9e-22  Score=171.26  Aligned_cols=151  Identities=14%  Similarity=0.158  Sum_probs=104.4

Q ss_pred             CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178          192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM  271 (412)
Q Consensus       192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~  271 (412)
                      +|++  +|+++ ++++++++|+.+|+++|.++++  +++||+|++|+++|+||..|+...-..       ..........
T Consensus         5 ~v~~--~m~r~-v~~v~~~~~l~~a~~~m~~~~~--~~lPVvd~~~~lvG~it~~Dl~~~~~~-------~~~~~~~~~~   72 (156)
T d2yzqa1           5 EIEP--YYQRY-VSIVWEGTPLKAALKALLLSNS--MALPVVDSEGNLVGIVDETDLLRDSEI-------VRIMKSTELA   72 (156)
T ss_dssp             BSTT--TSBSC-CCCEETTSBHHHHHHHHHTCSS--SEEEEECTTSCEEEEEEGGGGGGCGGG-------CC--------
T ss_pred             CHHH--HhcCC-CeEECCcCcHHHHHHHHHHcCC--CEEEEEeCCCCceeEEeeeechhhhcc-------cccccccccc
Confidence            4454  68999 9999999999999999999999  999999999999999887777552210       0000000000


Q ss_pred             cCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCC
Q 015178          272 DCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWS  351 (412)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~  351 (412)
                      .         .         ............       .    .       .+.........+++++|+++++||++++
T Consensus        73 ~---------~---------~~~~~~~~~~~~-------~----~-------~~~~~~~~~~~~v~~~m~~~~~tv~~~~  116 (156)
T d2yzqa1          73 A---------S---------SEEEWILESHPT-------L----L-------FEKFELQLPNKPVAEIMTRDVIVATPHM  116 (156)
T ss_dssp             ------------------------------------------------------------CCCBGGGTCBSSCCCBCTTS
T ss_pred             c---------c---------hhhhhhhhhhhh-------h----h-------HHHhhhcccCCEeehhcccCceEECccc
Confidence            0         0         000000000000       0    0       0000111223457789999999999999


Q ss_pred             cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      ++.++++.|.++++||+||||++|+++||||++||++++
T Consensus       117 ~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1         117 TVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             BHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             ccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence            999999999999999999999999999999999999876

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.4e-21  Score=169.08  Aligned_cols=141  Identities=19%  Similarity=0.227  Sum_probs=113.3

Q ss_pred             ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178            3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM   82 (412)
Q Consensus         3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~   82 (412)
                      .||++++++|+|..+.++|+++. ++|+.+|+++|.+++++++||++++                     .++++|+++.
T Consensus         8 ~~l~~~t~~Dlm~~~~~vv~l~~-~~sv~eA~~~l~~~~~~~~pVv~~~---------------------~~~~vG~is~   65 (159)
T d2v8qe2           8 TFMKSHRCYDLIPTSSKLVVFDT-SLQVKKAFFALVTNGVRAAPLWDSK---------------------KQSFVGMLTI   65 (159)
T ss_dssp             HHHHHSBGGGGSCSEEEEEEEET-TSBHHHHHHHHHHHTCSEEEEEETT---------------------TTEEEEEEEH
T ss_pred             HHhcCCEEEeECCCCCceEEEcC-CCcHHHHHHHHHHcCCCceeEEECC---------------------CCcEEEEEEH
Confidence            58999999999988889999999 9999999999999999999999864                     3689999999


Q ss_pred             HHHHHHhhhccc--CCCccc-------ccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCC
Q 015178           83 VDIISFLCKEEN--LLNPES-------ALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQP  152 (412)
Q Consensus        83 ~Dil~~l~~~~~--l~~~~~-------~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~  152 (412)
                      .||+.++.....  ......       .....+.++|.   .++++++++++|.+|++.|. +|+||+||++.       
T Consensus        66 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~-------  135 (159)
T d2v8qe2          66 TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSF---KPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-------  135 (159)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSC---CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT-------
T ss_pred             HHHHHHHHhccccccchhhhhhhhhcccccceeeeeec---cceEEECCCCcHHHHHHHHHHhCCeEEEEEEC-------
Confidence            999998764210  000000       01122344444   34899999999999999999 89999999864       


Q ss_pred             CCCCCcccCCCCeeeeecHHHHHHHHHHccC
Q 015178          153 KPSLKSTFHNDSEYCWLTQEDLIRYFLNCIG  183 (412)
Q Consensus       153 ~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~  183 (412)
                              ++++++|||||+||+|||+.|.+
T Consensus       136 --------~~g~~~GivT~~dilk~l~~~~~  158 (159)
T d2v8qe2         136 --------ESGNTLYILTHKRILKFLKLFIT  158 (159)
T ss_dssp             --------TTCCEEEEECHHHHHHHHHHHSC
T ss_pred             --------CCCeEEEEEeHHHHHHHHHHHcC
Confidence                    23678999999999999988654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.84  E-value=3.2e-21  Score=171.46  Aligned_cols=147  Identities=16%  Similarity=0.113  Sum_probs=115.6

Q ss_pred             cccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178            2 AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC   81 (412)
Q Consensus         2 ~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt   81 (412)
                      ..||.+++++|+|..+.++++++. +.||.+|++.|.+++++++||||++                     .++++|++|
T Consensus        14 ~~fl~~~~~~dvm~~s~~vv~i~~-~~~v~~A~~~m~~~~i~~lpVvd~~---------------------~~~~vGiis   71 (179)
T d2ooxe1          14 QAFIRSRTSYDVLPTSFRLIVFDV-TLFVKTSLSLLTLNNIVSAPLWDSE---------------------ANKFAGLLT   71 (179)
T ss_dssp             HHHHHHSBHHHHSCSEEEEEEEET-TSBHHHHHHHHHHHTCSCEEEEETT---------------------TTEEEEEEC
T ss_pred             HHHHcCCEeeeeCCCCCcEEEEEC-cchHHHHHHHHHHcCCCeEEEEeCC---------------------CCeeEEEEe
Confidence            469999999999987778999999 9999999999999999999999964                     368999999


Q ss_pred             hHHHHHHhhhc---ccCCCccc-c---------cCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCC
Q 015178           82 MVDIISFLCKE---ENLLNPES-A---------LQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAG  147 (412)
Q Consensus        82 ~~Dil~~l~~~---~~l~~~~~-~---------l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~  147 (412)
                      ..||+.++...   ........ .         ...++..+|.   .+++++.++++|.+|++.|. +++||+||++++.
T Consensus        72 ~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g  148 (179)
T d2ooxe1          72 MADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIP---PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG  148 (179)
T ss_dssp             HHHHHHHHHHHHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSC---SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECT
T ss_pred             echHHHHHHhccccccchhhhhhhhccchhhhcccceeeeecc---cCceEECCCCcHHHHHHHhhhcCceEEEEEecCC
Confidence            99999987631   00000000 0         0112333454   34899999999999999999 8999999997643


Q ss_pred             CCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCc
Q 015178          148 TKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGL  184 (412)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~  184 (412)
                      .           .++++++||||++||+|||+.|...
T Consensus       149 ~-----------~~~~~vvgiiT~~dIlk~l~~~~~~  174 (179)
T d2ooxe1         149 E-----------TGSEMIVSVLTQYRILKFISMNCKE  174 (179)
T ss_dssp             T-----------TCCEEEEEEEEHHHHHHHHHTTCGG
T ss_pred             C-----------cCCCcEEEEEeHHHHHHHHHHhhhH
Confidence            2           1345789999999999999987554

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1e-20  Score=162.15  Aligned_cols=135  Identities=24%  Similarity=0.357  Sum_probs=101.5

Q ss_pred             CCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhh
Q 015178          189 PNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLM  268 (412)
Q Consensus       189 ~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~  268 (412)
                      +.+++.+|++++.++++++.+++|+.+|+++|.++++  +++||+|++|+++|+                   +|.+|++
T Consensus         4 ~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~--~~ipVvd~~~~~vG~-------------------it~~Di~   62 (140)
T d2nyca1           4 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV--SSVPIIDENGYLINV-------------------YEAYDVL   62 (140)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHHH
T ss_pred             ccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCC--cEEEEEecCCeEcce-------------------ehhhHHH
Confidence            4678999986665559999999999999999999999  999999999999999                   5677777


Q ss_pred             hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeC
Q 015178          269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCH  348 (412)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~  348 (412)
                      .++......         ... ......   +.                                  ....+..++++|+
T Consensus        63 ~~~~~~~~~---------~~~-~~~~~~---~~----------------------------------~~~~~~~~~~~v~   95 (140)
T d2nyca1          63 GLIKGGIYN---------DLS-LSVGEA---LM----------------------------------RRSDDFEGVYTCT   95 (140)
T ss_dssp             HHHHTC-------------CC-SBHHHH---HH----------------------------------HCC------CEEC
T ss_pred             HHHhhcccc---------ccc-cchhhh---hh----------------------------------hhhhcccccEEEC
Confidence            654211000         000 000000   00                                  0123456789999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          349 PWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       349 ~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      +++++.+++++|.++++|++||||++|+++||||++||++++.
T Consensus        96 ~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          96 KNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence            9999999999999999999999999999999999999999986

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.82  E-value=1.8e-20  Score=163.02  Aligned_cols=134  Identities=22%  Similarity=0.314  Sum_probs=103.3

Q ss_pred             CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178          192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM  271 (412)
Q Consensus       192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~  271 (412)
                      |++++.+.+.++++++.+++|+.+|+++|.++++  +++||+|++|+++|+                   ++.+|++.++
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~--~~lpVvd~~~~~vG~-------------------it~~Dl~~~~   60 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNI--SAVPIVNSEGTLLNV-------------------YESVDVMHLI   60 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTC--SEEEEECGGGBEEEE-------------------EEHHHHHHHH
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCc--ceEeeecccceEEEE-------------------EEeeeeeehh
Confidence            5677777765449999999999999999999999  999999999999999                   5677776543


Q ss_pred             cCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCC
Q 015178          272 DCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWS  351 (412)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~  351 (412)
                      ..+. ...+         ...+...   +.                                  ....+..++++|.+++
T Consensus        61 ~~~~-~~~~---------~~~v~~~---~~----------------------------------~~~~~~~~~~~v~~~~   93 (153)
T d2ooxe2          61 QDGD-YSNL---------DLSVGEA---LL----------------------------------KRPANFDGVHTCRATD   93 (153)
T ss_dssp             GGGC-GGGG---------GSBHHHH---HH----------------------------------TSCCCSSCCCEECTTC
T ss_pred             cccc-cccc---------ccchhhh---ee----------------------------------eeecccCCCeEECCCC
Confidence            2100 0000         0001111   10                                  0123567889999999


Q ss_pred             cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      ++.++++.|.++++|++||||++|+++||||++||++++...
T Consensus        94 ~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~  135 (153)
T d2ooxe2          94 RLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD  135 (153)
T ss_dssp             BHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred             cHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence            999999999999999999999999999999999999998754

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.81  E-value=3.5e-20  Score=156.79  Aligned_cols=118  Identities=25%  Similarity=0.231  Sum_probs=100.8

Q ss_pred             cCCCCCcEEEEeCCCcHHHHHHHHHhcC-----CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178          197 NIVDDAGIFAIQYDEPAAFAIPLIAQSH-----INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM  271 (412)
Q Consensus       197 ~i~~~~~v~tv~~~~~~~~a~~~m~~~~-----i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~  271 (412)
                      ++|+++ ++++++++|+.+|++.|++++     +  +.+||||++|+++|+                   ++.+|++..-
T Consensus         5 ~iM~~d-~i~v~~~~tv~ea~~~m~~~~~~~~~~--~~~~Vvd~~~~l~G~-------------------v~~~~l~~~~   62 (127)
T d2ouxa2           5 AIMTTE-FVSIVANQTVRSAMYVLKNQADMAETI--YYVYVVDQENHLVGV-------------------ISLRDLIVND   62 (127)
T ss_dssp             HHCBSC-CCEECSSSBHHHHHHHHHHHCSSCSCC--SEEEEECTTCBEEEE-------------------EEHHHHTTSC
T ss_pred             HhCCCC-cEEECCCCcHHHHHHHhHhhcccccce--eeeEEEecCCeEEEE-------------------EEeecccccc
Confidence            379999 999999999999999998874     6  899999999999999                   4444443200


Q ss_pred             cCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCC
Q 015178          272 DCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWS  351 (412)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~  351 (412)
                                                                                  ...+++++|++++++++|++
T Consensus        63 ------------------------------------------------------------~~~~v~~im~~~~~~v~~~~   82 (127)
T d2ouxa2          63 ------------------------------------------------------------DDTLIADILNERVISVHVGD   82 (127)
T ss_dssp             ------------------------------------------------------------TTSBHHHHSBSCCCCEETTS
T ss_pred             ------------------------------------------------------------ccEEhhhhccCCCccCCCCC
Confidence                                                                        00124578999999999999


Q ss_pred             cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      ++.+|++.|.+++++++||||++|+|+||||..||++++.++..|
T Consensus        83 ~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~eea~s  127 (127)
T d2ouxa2          83 DQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEAAS  127 (127)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999887654

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=4.3e-20  Score=158.81  Aligned_cols=135  Identities=22%  Similarity=0.311  Sum_probs=103.7

Q ss_pred             CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178          190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA  269 (412)
Q Consensus       190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~  269 (412)
                      .++++++.+.+..+++++++++|+.+|+++|.++++  +++||+|++|+++|+||                   .+|++.
T Consensus         8 ~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~--~~lpVvd~~~~~~Gvit-------------------~~di~~   66 (145)
T d2v8qe1           8 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRV--SALPVVDEKGRVVDIYS-------------------KFDVIN   66 (145)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCC--SEEEEECTTSBEEEEEE-------------------GGGTGG
T ss_pred             hCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCC--CcccccccCCceEEEEE-------------------cchhhh
Confidence            567888887764349999999999999999999999  99999999999999955                   444444


Q ss_pred             hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178          270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP  349 (412)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~  349 (412)
                      ++..+. ...+         ...+.   +.                                  ..+...|..++++|.+
T Consensus        67 ~l~~~~-~~~~---------~~~v~---~~----------------------------------~~~~~~~~~~~~~v~~   99 (145)
T d2v8qe1          67 LAAEKT-YNNL---------DVSVT---KA----------------------------------LQHRSHYFEGVLKCYL   99 (145)
T ss_dssp             GGGSSC-CCCC---------SSBHH---HH----------------------------------GGGCCSCCCSCCEECT
T ss_pred             hhhccc-ccch---------hhhhh---hc----------------------------------cchhhhccCCCeEECC
Confidence            321100 0000         00000   00                                  0012346788999999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ++++.+++++|.++++|++||||++|+++|+||++||++++..
T Consensus       100 ~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1         100 HETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.81  E-value=2.6e-20  Score=159.56  Aligned_cols=129  Identities=19%  Similarity=0.200  Sum_probs=103.9

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|+++ ++++++++++.+|++.|.++++  +++||+|++|+++|+                   +|.+|++.+...    
T Consensus         7 iM~~~-~~~v~~~~tl~~a~~~m~~~~~--~~lpVvd~~~~~~Gi-------------------it~~dl~~~~~~----   60 (139)
T d2o16a3           7 MMTRH-PHTLLRTHTLNDAKHLMEALDI--RHVPIVDANKKLLGI-------------------VSQRDLLAAQES----   60 (139)
T ss_dssp             TSEES-CCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHHHHHHHH----
T ss_pred             hCcCC-CeEECCcCCHHHHHHHHHHcCC--Ceeeeeccccccccc-------------------ccHHHHHHHHHh----
Confidence            68888 9999999999999999999999  999999999999999                   567777664310    


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                               .+     ...   .. .             .  .         .....++.++|++++++|++++++.+++
T Consensus        61 ---------~~-----~~~---~~-~-------------~--~---------~~~~~~v~~im~~~~~~v~~~~~l~~a~   98 (139)
T d2o16a3          61 ---------SL-----QRS---AQ-G-------------D--S---------LAFETPLFEVMHTDVTSVAPQAGLKESA   98 (139)
T ss_dssp             ---------HC-----C-------------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHH
T ss_pred             ---------hh-----hhh---hc-c-------------c--c---------cccccchhHhhccccccccccchHHHHH
Confidence                     00     000   00 0             0  0         0011245678999999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      .+|.+++++++||+|+ |+++|+||++||++++.+.+.
T Consensus        99 ~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~~~~~~~  135 (139)
T d2o16a3          99 IYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLE  135 (139)
T ss_dssp             HHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHcCceEEEEEEC-CEEEEEEEHHHHHHHHHHHHh
Confidence            9999999999999996 899999999999999988654

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=1.3e-20  Score=158.23  Aligned_cols=117  Identities=20%  Similarity=0.237  Sum_probs=97.5

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|+++ ++++.+++++.+|+++|.++++  +++||+|++|+++|+                   +|.+|++...-     
T Consensus         6 iM~~~-~~~v~~~~tl~~a~~~m~~~~~--~~~pVvd~~~~~~Gi-------------------it~~Di~~~~~-----   58 (123)
T d1y5ha3           6 IMNAG-VTCVGEHETLTAAAQYMREHDI--GALPICGDDDRLHGM-------------------LTDRDIVIKGL-----   58 (123)
T ss_dssp             HSEET-CCCEETTSBHHHHHHHHHHHTC--SEEEEECGGGBEEEE-------------------EEHHHHHHTTG-----
T ss_pred             hcCCC-CcEECCcCcHHHHHHHHHHcCC--CceEEEeccchhhhh-------------------hhhhhHhhhhh-----
Confidence            68888 9999999999999999999999  999999999999999                   66777765210     


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                             .++       .    ..              ....++++|++++++|++++++.+++
T Consensus        59 -----------------------~~~-------~----~~--------------~~~~v~~im~~~~~~v~~~~~~~~~~   90 (123)
T d1y5ha3          59 -----------------------AAG-------L----DP--------------NTATAGELARDSIYYVDANASIQEML   90 (123)
T ss_dssp             -----------------------GGT-------C----CT--------------TTSBHHHHHTTCCCCEETTCCHHHHH
T ss_pred             -----------------------hcC-------C----Cc--------------ccceEEEEeeccceeeeecchHHHHH
Confidence                                   000       0    00              00124568899999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      ++|.+++++++||+|+ |+++||||++||++++
T Consensus        91 ~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          91 NVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  122 (123)
T ss_dssp             HHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             HHHHHcCceEEEEEEC-CEEEEEEEHHHHHhhC
Confidence            9999999999999995 7999999999999864

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=9.5e-20  Score=154.77  Aligned_cols=128  Identities=18%  Similarity=0.339  Sum_probs=107.0

Q ss_pred             CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178          190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA  269 (412)
Q Consensus       190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~  269 (412)
                      ..+|++  +|+++ ++++++++|+.+|++.|.++++  +++||+|++|+++|+                   +|..|++.
T Consensus         4 ~~pV~~--im~~~-~~~v~~~~t~~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------it~~di~~   59 (132)
T d2yzia1           4 KAPIKV--YMTKK-LLGVKPSTSVQEASRLMMEFDV--GSLVVINDDGNVVGF-------------------FTKSDIIR   59 (132)
T ss_dssp             TSBGGG--TCBCC-CCEECTTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE-------------------EEHHHHHH
T ss_pred             CCcHHH--HcCCC-CeEECCcCcHHHHHHHHHHcCC--cEEEEecccceeeee-------------------eeHHHHHH
Confidence            457876  69999 9999999999999999999999  999999999999999                   66778765


Q ss_pred             hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178          270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP  349 (412)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~  349 (412)
                      .+..                            +.       .+                   ...+++++|.++++++++
T Consensus        60 ~~~~----------------------------~~-------~~-------------------~~~~v~~im~~~~~~v~~   85 (132)
T d2yzia1          60 RVIV----------------------------PG-------LP-------------------YDIPVERIMTRNLITANV   85 (132)
T ss_dssp             HTTT----------------------------TC-------CC-------------------TTSBGGGTCBCSCCEEET
T ss_pred             HHhh----------------------------cc-------Cc-------------------cceeEeecccccccccCc
Confidence            3210                            00       00                   012356789999999999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      ++++.++++.|.+++++++||+| +|+++|+||.+||++++.+++++
T Consensus        86 ~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~le~  131 (132)
T d2yzia1          86 NTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRLET  131 (132)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCSCC
T ss_pred             chHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHcc
Confidence            99999999999999999999876 48999999999999998876654

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.80  E-value=1.3e-19  Score=152.64  Aligned_cols=113  Identities=18%  Similarity=0.207  Sum_probs=94.8

Q ss_pred             CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC--CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCC
Q 015178          199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE--EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRP  276 (412)
Q Consensus       199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~  276 (412)
                      |..+ ++++++++++.+|+++|.++++  +++||+|+  +|+++|+                   +|.+|++.....+  
T Consensus         3 mi~d-pvtv~~~~tv~~a~~~m~~~~~--~~~pVvD~~~~~~lvGi-------------------vt~~Di~~~~~~~--   58 (126)
T d1zfja4           3 VIID-PFFLTPEHKVSEAEELMQRYRI--SGVPIVETLANRKLVGI-------------------ITNRDMRFISDYN--   58 (126)
T ss_dssp             TSSS-CCCBCSSSBHHHHHHHHHHTTC--SEEEEESCTTTCBEEEE-------------------EEHHHHHHCSCSS--
T ss_pred             CEeC-ceEECCCCCHHHHHHHHHHhCC--CcEEEEeeccCCeEEEE-------------------eEHHHHHHhhccC--
Confidence            4567 8899999999999999999999  99999997  6899999                   6677776521100  


Q ss_pred             CchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHH
Q 015178          277 PKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAV  356 (412)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v  356 (412)
                                                        .                      .....+|+.+++++++++++.++
T Consensus        59 ----------------------------------~----------------------~~~~~~~~~~~~~~~~~~~l~~a   82 (126)
T d1zfja4          59 ----------------------------------A----------------------PISEHMTSEHLVTAAVGTDLETA   82 (126)
T ss_dssp             ----------------------------------S----------------------BTTTSCCCSCCCCEETTCCHHHH
T ss_pred             ----------------------------------C----------------------ceeeeeeccceeecCCCCCHHHH
Confidence                                              0                      00123467789999999999999


Q ss_pred             HHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          357 IMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       357 ~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      +++|.+++++++||||++|+++||||++||++++.
T Consensus        83 ~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          83 ERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             HHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            99999999999999999999999999999999864

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=1e-19  Score=156.66  Aligned_cols=125  Identities=18%  Similarity=0.253  Sum_probs=104.1

Q ss_pred             CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178          192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM  271 (412)
Q Consensus       192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~  271 (412)
                      ++++  +|+++ +.++++++++.+|++.|.++++  +.+||+|++|+++|+                   +|.+|+++.+
T Consensus         4 ~v~d--im~~~-~~~v~~~~tl~~a~~~m~~~~~--~~~~V~d~~~~~~Gi-------------------it~~di~~~~   59 (142)
T d1pvma4           4 RVEK--IMNSN-FKTVNWNTTVFDAVKIMNENHL--YGLVVKDDNGNDVGL-------------------LSERSIIKRF   59 (142)
T ss_dssp             BGGG--TSBTT-CCEEETTCBHHHHHHHHHHHTC--CEEEEECTTSCEEEE-------------------EEHHHHHHHT
T ss_pred             EHHH--hCCCC-CcEECCcCcHHHHHHHHHHCCC--ceEeeeccCCcccce-------------------EEeechhhhh
Confidence            3454  78899 9999999999999999999999  999999999999999                   6677776532


Q ss_pred             cCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCC
Q 015178          272 DCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWS  351 (412)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~  351 (412)
                      ..                            ..             .            .....+++++|++++++|++++
T Consensus        60 ~~----------------------------~~-------------~------------~~~~~~v~~im~~~~~~v~~~~   86 (142)
T d1pvma4          60 IP----------------------------RN-------------K------------KPDEVPIRLVMRKPIPKVKSDY   86 (142)
T ss_dssp             GG----------------------------GC-------------C------------CGGGSBGGGTSBSSCCEEETTC
T ss_pred             hh----------------------------hc-------------c------------cccccccccccccccccccchh
Confidence            10                            00             0            0001235678999999999999


Q ss_pred             cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      ++.+++++|.+++++++||||++|+++|+||..||++++.+.
T Consensus        87 ~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~  128 (142)
T d1pvma4          87 DVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA  128 (142)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHH
T ss_pred             hHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhh
Confidence            999999999999999999999999999999999999987653

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=9.6e-20  Score=157.30  Aligned_cols=116  Identities=22%  Similarity=0.255  Sum_probs=100.6

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcC-----CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhc
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSH-----INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMD  272 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~-----i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~  272 (412)
                      +|+++ ++++++++|+.+|++.|++++     +  +.+||||++|+++|+                   ++.+|++....
T Consensus         6 iM~~~-~itv~~~~tv~ea~~~m~~~~~~~~~~--~~~~Vvd~~~~l~G~-------------------v~~~dl~~~~~   63 (144)
T d2yvxa2           6 LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETI--YYIYVVDEKGRLKGV-------------------LSLRDLIVADP   63 (144)
T ss_dssp             GCBSC-CCEECSSCBHHHHHHHSSSSCTTSSCS--SBCEEBCTTCBBCCB-------------------CBHHHHTTSCT
T ss_pred             ccCCC-CEEECCCCcHHHHHHHHHHhcccccce--eeeEEecCCCCEecc-------------------cchhhhhhccc
Confidence            79999 999999999999999998874     6  899999999999999                   66777654100


Q ss_pred             CCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCc
Q 015178          273 CGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSS  352 (412)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~s  352 (412)
                                                                                  ...+.++|++++++++|+++
T Consensus        64 ------------------------------------------------------------~~~v~~im~~~~~~v~~~~~   83 (144)
T d2yvxa2          64 ------------------------------------------------------------RTRVAEIMNPKVVYVRTDTD   83 (144)
T ss_dssp             ------------------------------------------------------------TCBSTTTSBSSCCCEESSCC
T ss_pred             ------------------------------------------------------------ccchHHhcccCCccCCCCCh
Confidence                                                                        01134678999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178          353 LMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR  395 (412)
Q Consensus       353 l~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~  395 (412)
                      +.+|++.|.+++++++||||++|+|+||||.+||++++.++..
T Consensus        84 ~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~~  126 (144)
T d2yvxa2          84 QEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEAT  126 (144)
T ss_dssp             HHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999987543

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.79  E-value=2.8e-19  Score=150.77  Aligned_cols=123  Identities=18%  Similarity=0.232  Sum_probs=103.3

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      ..|++  +|+++ ++++.+++++.+|+++|.++++  +++||+|+ |+++|+                   +|.+|+++.
T Consensus         4 ~~V~d--~m~~~-~v~v~~~~tl~~a~~~m~~~~~--~~~pV~d~-~~~~Gi-------------------vt~~dl~~~   58 (127)
T d2ef7a1           4 EIVKE--YMKTQ-VISVTKDAKLNDIAKVMTEKNI--GSVIVVDG-NKPVGI-------------------ITERDIVKA   58 (127)
T ss_dssp             CBGGG--TSBCS-CCEEETTCBHHHHHHHHHHHTC--SEEEEEET-TEEEEE-------------------EEHHHHHHH
T ss_pred             cCHHH--hCCCC-CeEECCcCcHHHHHHHHHHcCC--ceEEeecc-cchhhh-------------------cchhHHHHH
Confidence            45565  68898 9999999999999999999999  99999985 799999                   667887764


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW  350 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~  350 (412)
                      +..+                                    .    .               ...++.++|.+++++|.++
T Consensus        59 ~~~~------------------------------------~----~---------------~~~~v~~~~~~~~~~v~~~   83 (127)
T d2ef7a1          59 IGKG------------------------------------K----S---------------LETKAEEFMTASLITIRED   83 (127)
T ss_dssp             HHTT------------------------------------C----C---------------TTCBGGGTSEECCCCEETT
T ss_pred             HHhh------------------------------------c----c---------------ccchhhhhhhhhccccccc
Confidence            3110                                    0    0               0012456788999999999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +++.++++.|.+++++++||||++|+++|+||+.||++++.+.
T Consensus        84 ~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~~  126 (127)
T d2ef7a1          84 SPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (127)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998763

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.79  E-value=1.3e-19  Score=154.76  Aligned_cols=133  Identities=14%  Similarity=0.241  Sum_probs=107.4

Q ss_pred             CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178          192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM  271 (412)
Q Consensus       192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~  271 (412)
                      ||++  +|+++ ++++++++|+.+|+++|.++++  +++||+|++++++|+                   ++..|++.++
T Consensus         3 ~V~~--iMt~~-v~~v~~~~tl~~a~~~m~~~~~--~~ipVv~~~~~~~g~-------------------i~~~di~~~~   58 (141)
T d3ddja1           3 PVKV--FMSTK-VQTIYKEVRLDQAVKLMLRRGF--RRLPVIDDDNKVVGI-------------------VTVVNAIKQL   58 (141)
T ss_dssp             BHHH--HSBCS-CCCEETTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE-------------------EEHHHHHHHH
T ss_pred             eeHH--hCcCC-CeEEcCcCcHHHHHHHHHHcCC--CeeecccccCccccc-------------------cccccchhhh
Confidence            4555  68998 9999999999999999999999  999999999999999                   5567776543


Q ss_pred             cCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCC
Q 015178          272 DCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWS  351 (412)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~  351 (412)
                      ..             ..     ..    ..                          .......+++++|+++++++.+++
T Consensus        59 ~~-------------~~-----~~----~~--------------------------~~~~~~~~v~~im~~~~~~v~~~~   90 (141)
T d3ddja1          59 AK-------------AV-----DK----LD--------------------------PDYFYGKVVKDVMVTNLVTIDELA   90 (141)
T ss_dssp             HH-------------HH-----HH----TC--------------------------THHHHTCBHHHHSBCCCCBCCTTS
T ss_pred             hc-------------cc-----cc----cc--------------------------cccccCCCHHHHhCcccccccccc
Confidence            10             00     00    00                          000001235678999999999999


Q ss_pred             cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178          352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS  396 (412)
Q Consensus       352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~  396 (412)
                      ++.+++++|.+++++++||||++|+++|+||++||++++.+.+.+
T Consensus        91 ~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~~~  135 (141)
T d3ddja1          91 SVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVM  135 (141)
T ss_dssp             BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999876553

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=5.8e-20  Score=154.13  Aligned_cols=114  Identities=22%  Similarity=0.260  Sum_probs=84.1

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|+++ ++++++++++.+|+++|.++++  +++||+|++|+++|+||..|+..                   ...     
T Consensus         6 iM~~~-~v~v~~~~~v~~a~~~m~~~~~--~~~~Vvd~~~~~~G~it~~dl~~-------------------~~~-----   58 (122)
T d2yzqa2           6 IMTQN-PVTITLPATRNYALELFKKYKV--RSFPVVNKEGKLVGIISVKRILV-------------------NPD-----   58 (122)
T ss_dssp             HSEES-CCCEESSCC------------C--CEEEEECTTCCEEEEEESSCC-----------------------------
T ss_pred             ccCCC-CEEECCcCcHHHHHHHHHHcCC--cEEEEEeccccchhhhhcchhhh-------------------hhc-----
Confidence            68888 9999999999999999999999  99999999999999976555543                   100     


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                          +                                   ..+.++|..++++|++++++.+++
T Consensus        59 --------------------~-----------------------------------~~~~~~~~~~~~~v~~~~~l~~~~   83 (122)
T d2yzqa2          59 --------------------E-----------------------------------EQLAMLVKRDVPVVKENDTLKKAA   83 (122)
T ss_dssp             ------------------------------------------------------------CCCBSCCCEEETTSBHHHHH
T ss_pred             --------------------c-----------------------------------cchhhccccceeecchhhHHHHHH
Confidence                                0                                   002346778899999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      ++|.+++++++||||++|+++|+||++||+++++.+
T Consensus        84 ~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          84 KLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             HHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             HHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhH
Confidence            999999999999999999999999999999987654

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=3e-19  Score=153.22  Aligned_cols=135  Identities=16%  Similarity=0.163  Sum_probs=99.9

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|+++ ++++.+++|+.+|++.|.++++  +++||+|++|+++|+                   +|.+||+.+....   
T Consensus         9 ~m~~~-p~~v~~~~~v~~a~~~m~~~~~--~~ipVvd~~~~~vGi-------------------is~~Dl~~~~~~~---   63 (145)
T d1o50a3           9 LISLK-PTVVEEDTPIEEIVDRILEDPV--TRTVYVARDNKLVGM-------------------IPVMHLLKVSGFH---   63 (145)
T ss_dssp             SSCCC-CEEECTTCBHHHHHHHHHHSTT--CCEEEEEETTEEEEE-------------------EEHHHHHHHHHHH---
T ss_pred             hCCCC-CEEECCcCcHHHHHHHHHHcCC--ceEEEeccCcceeee-------------------eccchhhhhhhcc---
Confidence            68888 9999999999999999999999  999999999999999                   5566665543100   


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                               ...  ..... .....                        ........++.++| .+++++++++++.+|+
T Consensus        64 ---------~~~--~~~~~-~~~~~------------------------~~~~~~~~~~~~~~-~~~~~i~~~~~l~~a~  106 (145)
T d1o50a3          64 ---------FFG--FIPKE-ELIRS------------------------SMKRLIAKNASEIM-LDPVYVHMDTPLEEAL  106 (145)
T ss_dssp             ---------HHC--CCC--------------------------------CCCCCSSCBHHHHC-BCCCCBCTTSBHHHHH
T ss_pred             ---------ccc--ccchh-HHHHh------------------------hhhhccccCHHHHc-CCCEEEcCCCCHHHHH
Confidence                     000  00000 00000                        00011112234555 4568999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL  394 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~  394 (412)
                      ++|.++++|++||||++|+++|+||++||++++.+..
T Consensus       107 ~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~  143 (145)
T d1o50a3         107 KLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  143 (145)
T ss_dssp             HHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998754

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.78  E-value=2.4e-19  Score=151.31  Aligned_cols=114  Identities=14%  Similarity=0.198  Sum_probs=94.7

Q ss_pred             CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178          201 DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL  280 (412)
Q Consensus       201 ~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~  280 (412)
                      ++ ++++.+++|+.+|+++|.++++  +++||+| +|+++|+                   +|.+|+++.+..       
T Consensus        13 ~~-v~~i~~~~tl~~a~~~m~~~~~--~~vpV~~-~~~~vGi-------------------it~~Di~~~~~~-------   62 (127)
T d2rc3a1          13 HT-VVAIGPDDSVFNAMQKMAADNI--GALLVMK-DEKLVGI-------------------LTERDFSRKSYL-------   62 (127)
T ss_dssp             CC-CCEECTTSBHHHHHHHHHHHTC--SEEEEEE-TTEEEEE-------------------EEHHHHHHHGGG-------
T ss_pred             Cc-cEEECCcCcHHHHHHHHHHcCC--CEEEEEE-CCeEEEE-------------------EEccchhhhhhh-------
Confidence            35 9999999999999999999999  9999998 5899999                   677887653200       


Q ss_pred             HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178          281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA  360 (412)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m  360 (412)
                                          ...             .             ....++.++|++++++|.+++++.+++++|
T Consensus        63 --------------------~~~-------------~-------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m   96 (127)
T d2rc3a1          63 --------------------LDK-------------P-------------VKDTQVKEIMTRQVAYVDLNNTNEDCMALI   96 (127)
T ss_dssp             --------------------SSS-------------C-------------GGGSBGGGTSBCSCCCBCTTCBHHHHHHHH
T ss_pred             --------------------hcc-------------c-------------ccceeEeeeccceeEEeccCccHHHHHHHH
Confidence                                000             0             001235678999999999999999999999


Q ss_pred             HHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          361 LARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      .+++++++||+|+ |+++|+||++||++++.
T Consensus        97 ~~~~~~~lpVvd~-~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          97 TEMRVRHLPVLDD-GKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             HHHTCSEEEEEET-TEEEEEEEHHHHHHHHH
T ss_pred             HHCCCcEEEEEEC-CEEEEEEEHHHHHHHHh
Confidence            9999999999995 89999999999999875

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=2e-19  Score=152.55  Aligned_cols=130  Identities=15%  Similarity=0.161  Sum_probs=103.1

Q ss_pred             CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178          191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY  270 (412)
Q Consensus       191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~  270 (412)
                      .+++++.+..++ ++++.+++|+.+|+++|.++++  +++||+|++|+++|+                   +|.+|++.+
T Consensus         2 ~tv~~~mip~~~-v~~v~~~~tl~~a~~~m~~~~~--s~~pVvd~~~~~vGi-------------------it~~di~~~   59 (132)
T d1yava3           2 ATVGQFMIEADK-VAHVQVGNNLEHALLVLTKTGY--TAIPVLDPSYRLHGL-------------------IGTNMIMNS   59 (132)
T ss_dssp             CBHHHHSEEGGG-SCCEETTCBHHHHHHHHHHHCC--SEEEEECTTCBEEEE-------------------EEHHHHHHH
T ss_pred             CCHHHccccccc-eEEEcCCCCHHHHHHHHHhhCC--CceEEeecccccccE-------------------EEcchhHHH
Confidence            356664444566 9999999999999999999999  999999999999999                   678888765


Q ss_pred             hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178          271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW  350 (412)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~  350 (412)
                      +......                                                 ........+++++|++++++|+++
T Consensus        60 ~~~~~~~-------------------------------------------------~~~~~~~~~v~~~m~~~~~~v~~~   90 (132)
T d1yava3          60 IFGLERI-------------------------------------------------EFEKLDQITVEEVMLTDIPRLHIN   90 (132)
T ss_dssp             HBCSSSB-------------------------------------------------CGGGTTTSBHHHHSBCSCCEEETT
T ss_pred             hhccccc-------------------------------------------------cccccccccccccccccccccccc
Confidence            4211000                                                 000000123567889999999999


Q ss_pred             CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178          351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR  393 (412)
Q Consensus       351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~  393 (412)
                      +++.+++..|.+++  .+||||++|+++||||++||++++.+.
T Consensus        91 ~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          91 DPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             SBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence            99999999998764  599999999999999999999999875

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=9.2e-19  Score=146.39  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=99.4

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|+++ +.++++++|+.+|+++|.+++.  +++||+|++|+++|+|                   +.+|++++..     
T Consensus         6 ~m~~~-~~~v~~~~tv~ea~~~m~~~~~--~~v~Vvd~~~~~~Gii-------------------~~~dl~~~~~-----   58 (121)
T d1vr9a3           6 WVTQD-FPMVEESATVRECLHRMRQYQT--NECIVKDREGHFRGVV-------------------NKEDLLDLDL-----   58 (121)
T ss_dssp             GCBSC-SCEEETTCBHHHHHHHHHHTTS--SEEEEECTTSBEEEEE-------------------EGGGGTTSCT-----
T ss_pred             hhcCC-CeEECCCCCHHHHHHhhhhcCc--EEEEEEeCCceeEEEe-------------------ehhhhhhhhc-----
Confidence            68888 9999999999999999999999  9999999999999995                   4555543210     


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                                                             ..++.++|..+++++++++++.+++
T Consensus        59 -------------------------------------------------------~~~v~~~~~~~~~~v~~~~~l~~~~   83 (121)
T d1vr9a3          59 -------------------------------------------------------DSSVFNKVSLPDFFVHEEDNITHAL   83 (121)
T ss_dssp             -------------------------------------------------------TSBSGGGCBCTTCCEETTSBHHHHH
T ss_pred             -------------------------------------------------------cccccccccCccEEECCCCCHHHHH
Confidence                                                                   0012456778899999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL  394 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~  394 (412)
                      ++|.+++++++||||++|+++|+||+.||++++.+++
T Consensus        84 ~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3          84 LLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             HHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998753

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=5.7e-19  Score=156.71  Aligned_cols=166  Identities=15%  Similarity=0.153  Sum_probs=111.5

Q ss_pred             cHHHHHHHHHHccCcCCCCCCCCcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeeecCC
Q 015178          170 TQEDLIRYFLNCIGLLSPTPNQPINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDISPF  246 (412)
Q Consensus       170 Tq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~IS~~  246 (412)
                      ||.+.++-+..-      +..+++.+  +|.  .+ ++++.++.|+.+|++.|.++++  +++||+|+ +++++|+    
T Consensus         5 ~~~~~~~~i~~f------l~~~~~~d--vm~~s~~-vv~i~~~~~v~~A~~~m~~~~i--~~lpVvd~~~~~~vGi----   69 (179)
T d2ooxe1           5 TQKGALKEIQAF------IRSRTSYD--VLPTSFR-LIVFDVTLFVKTSLSLLTLNNI--VSAPLWDSEANKFAGL----   69 (179)
T ss_dssp             HHHHHHHHHHHH------HHHSBHHH--HSCSEEE-EEEEETTSBHHHHHHHHHHHTC--SCEEEEETTTTEEEEE----
T ss_pred             HHHHHHHHHHHH------HcCCEeee--eCCCCCc-EEEEECcchHHHHHHHHHHcCC--CeEEEEeCCCCeeEEE----
Confidence            456666655431      11334555  354  45 9999999999999999999999  99999995 4799999    


Q ss_pred             ccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcccccccc
Q 015178          247 SFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSA  326 (412)
Q Consensus       247 dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  326 (412)
                                     +|.+|++.++...            .. ..........+..              .      ...
T Consensus        70 ---------------is~~Di~~~l~~~------------~~-~~~~~~~~~~~~~--------------~------~~~  101 (179)
T d2ooxe1          70 ---------------LTMADFVNVIKYY------------YQ-SSSFPEAIAEIDK--------------F------RLL  101 (179)
T ss_dssp             ---------------ECHHHHHHHHHHH------------HH-HCSCGGGGGGGGG--------------S------BHH
T ss_pred             ---------------EeechHHHHHHhc------------cc-cccchhhhhhhhc--------------c------chh
Confidence                           6677776643100            00 0000000000000              0      000


Q ss_pred             ccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCC-----cEEEEEehHHHHHHHHHHHhhcccc
Q 015178          327 QSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDC-----TLVGIVTFTGMLRVIRDRLRSMAKA  400 (412)
Q Consensus       327 ~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~-----~lvGIVT~~DIL~~l~~~~~~~~~~  400 (412)
                      ...  ....+...|..++++|.++++|.+++.+|.++++||+||||++|     +++||||++|||+.+..+..+...+
T Consensus       102 ~~~--~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~~~~~~~l  178 (179)
T d2ooxe1         102 GLR--EVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAML  178 (179)
T ss_dssp             HHH--HHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTTCGGGGGC
T ss_pred             hhc--ccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHhhhHhhcc
Confidence            000  00012346789999999999999999999999999999999765     6999999999999998877765543

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=8.8e-19  Score=148.56  Aligned_cols=127  Identities=17%  Similarity=0.132  Sum_probs=99.3

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|+++ ++++++++++.+|+++|.++++  +++||+|+  +++|+                   ++..|++.++......
T Consensus         6 lM~~~-~~~v~~~~tl~~a~~~m~~~~~--~~l~V~d~--~lvg~-------------------~~~~~~~~~~~~~~~~   61 (135)
T d3ddja2           6 LMIKN-PPILSKEDRLGSAFKKINEGGI--GRIIVANE--KIEGL-------------------LTTRDLLSTVESYCKD   61 (135)
T ss_dssp             TCEES-CCEECTTSBHHHHHHHTTGGGC--CEEEEESS--SEEEE-------------------EEHHHHHGGGTTCC--
T ss_pred             EeeCC-CeEECCCCcHHHHHHHHHHhCC--eEEEEEec--ceece-------------------eeccchhhhhcccccc
Confidence            68888 9999999999999999999999  99999975  79999                   5666766544211100


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                      ...             ......+                               ...+++++|+.++++|++++++.+++
T Consensus        62 ~~~-------------~~~~~~~-------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~   97 (135)
T d3ddja2          62 SCS-------------QGDLYHI-------------------------------STTPIIDYMTPNPVTVYNTSDEFTAI   97 (135)
T ss_dssp             -CC-------------HHHHHHH-------------------------------HTSBGGGTSEESCCCEETTSCHHHHH
T ss_pred             chh-------------hhhcccc-------------------------------ccCCHHHHhCCccceEEeccccchhh
Confidence            000             0000000                               01235678999999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      .+|.+++++++||||++|+++|+||++||++++.+
T Consensus        98 ~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          98 NIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             HHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             hhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            99999999999999999999999999999998754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=2.4e-20  Score=156.22  Aligned_cols=115  Identities=16%  Similarity=0.123  Sum_probs=61.9

Q ss_pred             CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178          199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR  275 (412)
Q Consensus       199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~  275 (412)
                      |.++ ++|+++++++.+|+++|.++++  +++||+|+   +|+++|+||                   .+|++.....  
T Consensus         2 m~~~-pvtv~~~~tl~da~~~m~~~~i--~~~pVvd~~~~~~~lvGivT-------------------~~Di~~~~~~--   57 (120)
T d1jr1a4           2 FITD-PVVLSPKDRVRDVFEAKARHGF--CGIPITDTGRMGSRLVGIIS-------------------SRDIDFLKEE--   57 (120)
T ss_dssp             EECT-TCC----CCCC--CCBC-----------------CTTCCC-----------------------------------
T ss_pred             cccC-CEEECCcCCHHHHHHHHHHhCC--CeEEEeeccccCCeEeeeee-------------------eeeeeehhcc--
Confidence            3456 7799999999999999999999  99999985   579999955                   5554321100  


Q ss_pred             CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHH
Q 015178          276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMA  355 (412)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~  355 (412)
                                 .     ....    .               .                  ....+..++++|++++++.+
T Consensus        58 -----------~-----~~~~----~---------------~------------------~~~~~~~~~~~v~~~~~~~~   84 (120)
T d1jr1a4          58 -----------E-----HDRF----L---------------E------------------EIMTKREDLVVAPAGITLKE   84 (120)
T ss_dssp             -------------------------------------------------------------CCSBTTTSCCEETTCCHHH
T ss_pred             -----------c-----cCce----e---------------E------------------EEEeeccCceEECCCCCHHH
Confidence                       0     0000    0               0                  00124567999999999999


Q ss_pred             HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      |+++|.+++++++||||++|+++||||++||+++.
T Consensus        85 a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          85 ANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             HHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred             HHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence            99999999999999999999999999999999863

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.75  E-value=2.7e-18  Score=148.73  Aligned_cols=146  Identities=12%  Similarity=0.075  Sum_probs=99.2

Q ss_pred             CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC--CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178          192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE--EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA  269 (412)
Q Consensus       192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~  269 (412)
                      ++++  +|+++ ++++++++++.+|+++|.++++  +++||+|+  ++.++|++|..||.+.-...       .......
T Consensus        12 ~V~d--iM~~~-~~~v~~~~tv~e~~~~l~~~~~--~~~PVvd~~~~~~lvg~is~~dl~~~l~~~-------~~~~~~~   79 (160)
T d2d4za3          12 QVGD--IMVRD-VTSIASTSTYGDLLHVLRQTKL--KFFPFVDTPDTNTLLGSIDRTEVEGLLQRR-------ISAYRRQ   79 (160)
T ss_dssp             BTTS--SSBSS-CCCEETTCBHHHHHHHHHHCCC--SEEEEESCTTTCBEEEEEEHHHHHHHHHHH-------HHTTSSS
T ss_pred             EHHH--hcCCC-CeEECCCCcHHHHHHHHHhcCC--CccccccccccccccccchHHHHHHHHhhc-------ccccccc
Confidence            4554  79998 9999999999999999999999  99999995  46899996655544311000       0000000


Q ss_pred             hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178          270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP  349 (412)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~  349 (412)
                      ...   ......          ....+   ....                         .......+.++|..++++++|
T Consensus        80 ~~~---~~~~~~----------~~~~~---~~~~-------------------------~~~~~~~~~~~~~~~~~tv~~  118 (160)
T d2d4za3          80 PFE---EMLTLE----------EIYRW---EQRE-------------------------KNVVVNFETCRIDQSPFQLVE  118 (160)
T ss_dssp             CCC---SCCBHH----------HHHHH---HHHH-------------------------TTCBCCTTSSCEECCSCCBCT
T ss_pred             chh---hccccc----------hhhhh---hhhh-------------------------cccccceeeecccCCCEEEcC
Confidence            000   000000          00000   0000                         000012245678999999999


Q ss_pred             CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178          350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR  391 (412)
Q Consensus       350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~  391 (412)
                      ++++.++++.|.+++++++||+|+ |+++||||++||++++.
T Consensus       119 ~~~l~~~~~~m~~~~v~~l~V~d~-g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         119 GTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             TCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCeEEEEEEC-CEEEEEEEHHHHHHHhC
Confidence            999999999999999999999985 89999999999999874

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=2.9e-18  Score=145.28  Aligned_cols=130  Identities=14%  Similarity=0.138  Sum_probs=109.9

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      .+|+++|+.+.+++++++ ++|+.+|+++|.+++++++||+|+                      +++++|+++..||+.
T Consensus         2 ~tv~~~mip~~~v~~v~~-~~tl~~a~~~m~~~~~s~~pVvd~----------------------~~~~vGiit~~di~~   58 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQV-GNNLEHALLVLTKTGYTAIPVLDP----------------------SYRLHGLIGTNMIMN   58 (132)
T ss_dssp             CBHHHHSEEGGGSCCEET-TCBHHHHHHHHHHHCCSEEEEECT----------------------TCBEEEEEEHHHHHH
T ss_pred             CCHHHccccccceEEEcC-CCCHHHHHHHHHhhCCCceEEeec----------------------ccccccEEEcchhHH
Confidence            689999998889999999 999999999999999999999995                      368999999999999


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC  167 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~  167 (412)
                      ++++.... ........+|+++|...   ++++++++++.+++++|.++ +.+||+++                +++.+|
T Consensus        59 ~~~~~~~~-~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~-~~l~Vvd~----------------~~~~~G  117 (132)
T d1yava3          59 SIFGLERI-EFEKLDQITVEEVMLTD---IPRLHINDPIMKGFGMVINN-GFVCVEND----------------EQVFEG  117 (132)
T ss_dssp             HHBCSSSB-CGGGTTTSBHHHHSBCS---CCEEETTSBHHHHHHHTTTC-SEEEEECT----------------TCBEEE
T ss_pred             Hhhccccc-ccccccccccccccccc---ccccccchhHHHHHHHHHhC-CEEEEEcc----------------CCEEEE
Confidence            98863222 12233457899999855   89999999999999999843 45888753                367899


Q ss_pred             eecHHHHHHHHHHc
Q 015178          168 WLTQEDLIRYFLNC  181 (412)
Q Consensus       168 iITq~DIv~~l~~~  181 (412)
                      |||++||++++.++
T Consensus       118 ivt~~dil~~l~~~  131 (132)
T d1yava3         118 IFTRRVVLKELNKH  131 (132)
T ss_dssp             EEEHHHHHHHHHHH
T ss_pred             EEEHHHHHHHHHhh
Confidence            99999999999764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=1.1e-18  Score=146.13  Aligned_cols=121  Identities=13%  Similarity=0.116  Sum_probs=103.4

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      +|++|+|.  ++++++++ ++|+.+|++.|.+++++++||+|+                      +++++|++|..||+.
T Consensus         1 tt~~diM~--~~~~~v~~-~~tl~~a~~~m~~~~~~~~pVvd~----------------------~~~~~Giit~~Di~~   55 (123)
T d1y5ha3           1 TTARDIMN--AGVTCVGE-HETLTAAAQYMREHDIGALPICGD----------------------DDRLHGMLTDRDIVI   55 (123)
T ss_dssp             CCHHHHSE--ETCCCEET-TSBHHHHHHHHHHHTCSEEEEECG----------------------GGBEEEEEEHHHHHH
T ss_pred             CCHHHhcC--CCCcEECC-cCcHHHHHHHHHHcCCCceEEEec----------------------cchhhhhhhhhhHhh
Confidence            58999995  57999999 999999999999999999999985                      368999999999998


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      ++...+.     .....+++++|...   ++++++++++.+|+++|. ++++++||+++                 ++++
T Consensus        56 ~~~~~~~-----~~~~~~v~~im~~~---~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~-----------------~~lv  110 (123)
T d1y5ha3          56 KGLAAGL-----DPNTATAGELARDS---IYYVDANASIQEMLNVMEEHQVRRVPVISE-----------------HRLV  110 (123)
T ss_dssp             TTGGGTC-----CTTTSBHHHHHTTC---CCCEETTCCHHHHHHHHHHHTCSEEEEEET-----------------TEEE
T ss_pred             hhhhcCC-----CcccceEEEEeecc---ceeeeecchHHHHHHHHHHcCceEEEEEEC-----------------CEEE
Confidence            7654221     11245689999855   899999999999999999 99999999853                 4689


Q ss_pred             eeecHHHHHHHH
Q 015178          167 CWLTQEDLIRYF  178 (412)
Q Consensus       167 ~iITq~DIv~~l  178 (412)
                      |+||.+||+|+|
T Consensus       111 Giit~~Dil~~l  122 (123)
T d1y5ha3         111 GIVTEADIARHL  122 (123)
T ss_dssp             EEEEHHHHHHTC
T ss_pred             EEEEHHHHHhhC
Confidence            999999999874

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=5.7e-18  Score=147.26  Aligned_cols=142  Identities=11%  Similarity=0.113  Sum_probs=100.8

Q ss_pred             CCcccccCCC-CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeeecCCccCCcchhHHHhhhhcCHhhhh
Q 015178          191 QPINSLNIVD-DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLM  268 (412)
Q Consensus       191 ~~i~~L~i~~-~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~  268 (412)
                      +++.++  |. .++++++..++|+.+|+++|.++++  +++||+|+ +++++|+                   +|.+|++
T Consensus        13 ~t~~Dl--m~~~~~vv~l~~~~sv~eA~~~l~~~~~--~~~pVv~~~~~~~vG~-------------------is~~Dl~   69 (159)
T d2v8qe2          13 HRCYDL--IPTSSKLVVFDTSLQVKKAFFALVTNGV--RAAPLWDSKKQSFVGM-------------------LTITDFI   69 (159)
T ss_dssp             SBGGGG--SCSEEEEEEEETTSBHHHHHHHHHHHTC--SEEEEEETTTTEEEEE-------------------EEHHHHH
T ss_pred             CEEEeE--CCCCCceEEEcCCCcHHHHHHHHHHcCC--CceeEEECCCCcEEEE-------------------EEHHHHH
Confidence            456664  43 2239999999999999999999999  99999985 5799999                   5667766


Q ss_pred             hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeC
Q 015178          269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCH  348 (412)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~  348 (412)
                      .++..             ..     .   ......            ......     ... .......++|..++++|+
T Consensus        70 ~~~~~-------------~~-----~---~~~~~~------------~~~~~~-----~~~-~~~~~~~~~~~~~~~~v~  110 (159)
T d2v8qe2          70 NILHR-------------YY-----K---SALVQI------------YELEEH-----KIE-TWREVYLQDSFKPLVCIS  110 (159)
T ss_dssp             HHHHH-------------HH-----H---HHTTTC------------CCGGGC-----BHH-HHHHHHSSSSCCCCCCBC
T ss_pred             HHHHh-------------cc-----c---cccchh------------hhhhhh-----hcc-cccceeeeeeccceEEEC
Confidence            54310             00     0   000000            000000     000 000112357889999999


Q ss_pred             CCCcHHHHHHHHHHcCCcEEEEEeC-CCcEEEEEehHHHHHHHHHHH
Q 015178          349 PWSSLMAVIMQALARRVSYVWVVEE-DCTLVGIVTFTGMLRVIRDRL  394 (412)
Q Consensus       349 ~~~sl~~v~~~m~~~~ihrl~VVD~-~~~lvGIVT~~DIL~~l~~~~  394 (412)
                      |++++.+|+++|.++++||+||+|+ +|+++||||++|||+++...+
T Consensus       111 ~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~  157 (159)
T d2v8qe2         111 PNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI  157 (159)
T ss_dssp             TTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred             CCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHc
Confidence            9999999999999999999999985 579999999999999987653

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=1.8e-18  Score=150.09  Aligned_cols=130  Identities=14%  Similarity=0.112  Sum_probs=106.3

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      +++.+|.++|  +++++++++ ++|+.+|+++|.+++++++||+|+                      +++++|++|..|
T Consensus         1 ~~~~~v~~~m--~r~v~~v~~-~~~l~~a~~~m~~~~~~~lPVvd~----------------------~~~lvG~it~~D   55 (156)
T d2yzqa1           1 YKGVEIEPYY--QRYVSIVWE-GTPLKAALKALLLSNSMALPVVDS----------------------EGNLVGIVDETD   55 (156)
T ss_dssp             GGGCBSTTTS--BSCCCCEET-TSBHHHHHHHHHTCSSSEEEEECT----------------------TSCEEEEEEGGG
T ss_pred             CCCCCHHHHh--cCCCeEECC-cCcHHHHHHHHHHcCCCEEEEEeC----------------------CCCceeEEeeee
Confidence            4688999999  478999999 999999999999999999999996                      368999999999


Q ss_pred             HHHHhhhccc--------------CCC----------cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCce
Q 015178           85 IISFLCKEEN--------------LLN----------PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQN  139 (412)
Q Consensus        85 il~~l~~~~~--------------l~~----------~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~R  139 (412)
                      ++.++.....              ...          .......+|.++|+..   ++++.++++|.++++.|. +|+||
T Consensus        56 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~tv~~~~~l~~~~~~m~~~~~~~  132 (156)
T d2yzqa1          56 LLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRD---VIVATPHMTVHEVALKMAKYSIEQ  132 (156)
T ss_dssp             GGGCGGGCC--------------------------------CCCBGGGTCBSS---CCCBCTTSBHHHHHHHHHHHTCSE
T ss_pred             chhhhcccccccccccccchhhhhhhhhhhhhhHHHhhhcccCCEeehhcccC---ceEECcccccHHHHHHHHHcCeeE
Confidence            9875442100              000          0112346899999855   899999999999999999 99999


Q ss_pred             eeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHH
Q 015178          140 LVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF  178 (412)
Q Consensus       140 l~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l  178 (412)
                      +||+++                +++++||||++||+++|
T Consensus       133 lpVvd~----------------~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1         133 LPVIRG----------------EGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             EEEEET----------------TTEEEEEEEHHHHGGGG
T ss_pred             EEEEeC----------------CCEEEEEEEHHHHHHHh
Confidence            999864                36789999999999875

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.74  E-value=6.1e-18  Score=142.65  Aligned_cols=117  Identities=13%  Similarity=0.106  Sum_probs=96.1

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEE--cCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALV--DEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR  275 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV--d~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~  275 (412)
                      +|+++ ++++++++++.+|++.|.++++  +++||+  |++++++|+                   ++..|++.++..+.
T Consensus         6 im~~~-~v~v~~~~tl~ea~~~m~~~~~--~~~~Vv~~d~~~~~iGi-------------------~~~~dl~~~~~~~~   63 (131)
T d2riha1           6 LLKRP-PVSLPETATIREVATELAKNRV--GLAVLTARDNPKRPVAV-------------------VSERDILRAVAQRL   63 (131)
T ss_dssp             GCCSC-CEEEETTCBHHHHHHHHHHHTC--SEEEEEETTEEEEEEEE-------------------EEHHHHHHHHHTTC
T ss_pred             hccCC-CEEECCCCcHHHHHHHHHHhCC--CcEEEEEEcCCCEEEEE-------------------Eeeecccccccccc
Confidence            78898 9999999999999999999999  999999  455799999                   66777766431100


Q ss_pred             CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHH
Q 015178          276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMA  355 (412)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~  355 (412)
                                                              ...        .        ....+..+++++.+++++.+
T Consensus        64 ----------------------------------------~~~--------~--------~~~~~~~~~~~v~~~~~~~~   87 (131)
T d2riha1          64 ----------------------------------------DLD--------G--------PAMPIANSPITVLDTDPVHV   87 (131)
T ss_dssp             ----------------------------------------CTT--------S--------BSGGGCBCCCEEETTSBHHH
T ss_pred             ----------------------------------------ccc--------c--------ccccccccceeEeeecchHH
Confidence                                                    000        0        01234567889999999999


Q ss_pred             HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178          356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD  392 (412)
Q Consensus       356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~  392 (412)
                      ++++|.+++++++||||++|+++||||+.||++++..
T Consensus        88 a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          88 AAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             HHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             HHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999999999987654

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.74  E-value=5.6e-18  Score=142.70  Aligned_cols=123  Identities=13%  Similarity=0.115  Sum_probs=105.6

Q ss_pred             cchhccccCC-CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            8 VGVSDLCIGK-PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         8 ~~v~dl~~~~-~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      .||+|||..| ++++++++ ++|+.+|+++|.+++++++||.+                       +++++|+||..||+
T Consensus         2 ~tV~dim~~k~~~v~~i~~-~~tl~~a~~~m~~~~~~~vpV~~-----------------------~~~~vGiit~~Di~   57 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGP-DDSVFNAMQKMAADNIGALLVMK-----------------------DEKLVGILTERDFS   57 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECT-TSBHHHHHHHHHHHTCSEEEEEE-----------------------TTEEEEEEEHHHHH
T ss_pred             ccHHHHHccCCCccEEECC-cCcHHHHHHHHHHcCCCEEEEEE-----------------------CCeEEEEEEccchh
Confidence            3799999765 47999999 99999999999999999999998                       36899999999999


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      +.+...+     ......+++++|...   ++++++++++.+|+++|. ++++++||+++                 +++
T Consensus        58 ~~~~~~~-----~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----------------~~~  112 (127)
T d2rc3a1          58 RKSYLLD-----KPVKDTQVKEIMTRQ---VAYVDLNNTNEDCMALITEMRVRHLPVLDD-----------------GKV  112 (127)
T ss_dssp             HHGGGSS-----SCGGGSBGGGTSBCS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEET-----------------TEE
T ss_pred             hhhhhhc-----ccccceeEeeeccce---eEEeccCccHHHHHHHHHHCCCcEEEEEEC-----------------CEE
Confidence            8765421     123357899999866   899999999999999999 89999999852                 568


Q ss_pred             eeeecHHHHHHHHH
Q 015178          166 YCWLTQEDLIRYFL  179 (412)
Q Consensus       166 v~iITq~DIv~~l~  179 (412)
                      +|+||+.||++.+.
T Consensus       113 ~GiIt~~Dil~~~i  126 (127)
T d2rc3a1         113 IGLLSIGDLVKDAI  126 (127)
T ss_dssp             EEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHh
Confidence            99999999999763

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=6.8e-18  Score=140.81  Aligned_cols=115  Identities=16%  Similarity=0.184  Sum_probs=96.9

Q ss_pred             CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178          198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP  277 (412)
Q Consensus       198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~  277 (412)
                      +|+++ ++++++++|+.+|++.|.++++  +.+||+|+ |+++|+                   +|.+|+++++..+.  
T Consensus         5 iM~~~-~~~v~~~~sl~ea~~~~~~~~~--~~~~V~~~-~~~~Gv-------------------it~~Di~~~l~~~~--   59 (120)
T d1pbja3           5 VMVTD-VDTIDITASLEDVLRNYVENAK--GSSVVVKE-GVRVGI-------------------VTTWDVLEAIAEGD--   59 (120)
T ss_dssp             HCBCS-CCEEETTCBHHHHHHHHHHHCC--CEEEEEET-TEEEEE-------------------EEHHHHHHHHHHTC--
T ss_pred             hCCCC-CeEECCcCcHHHHHHHHHHcCc--eEEEEEeC-CcEEEE-------------------EEeeeccccccccc--
Confidence            68888 9999999999999999999999  99999975 899999                   66788876431000  


Q ss_pred             chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178          278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI  357 (412)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~  357 (412)
                                                       .                   ....++.++|+++++++++++++.+|+
T Consensus        60 ---------------------------------~-------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~   87 (120)
T d1pbja3          60 ---------------------------------D-------------------LAEVKVWEVMERDLVTISPRATIKEAA   87 (120)
T ss_dssp             ---------------------------------C-------------------TTTSBHHHHCBCGGGEECTTSCHHHHH
T ss_pred             ---------------------------------c-------------------ccceeEeeecccccccccchhHHHHHH
Confidence                                             0                   001235678999999999999999999


Q ss_pred             HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178          358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI  390 (412)
Q Consensus       358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l  390 (412)
                      ++|.+++++++||+|+ |+++|+||++||++|.
T Consensus        88 ~~m~~~~~~~l~V~~~-~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          88 EKMVKNVVWRLLVEED-DEIIGVISATDILRAK  119 (120)
T ss_dssp             HHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHH
T ss_pred             HHHHHcCCeEEEEEEC-CEEEEEEEHHHHHhcC
Confidence            9999999999999875 8999999999999985

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.73  E-value=1.1e-17  Score=142.92  Aligned_cols=128  Identities=16%  Similarity=0.210  Sum_probs=106.9

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      .+|+|+|.  ++++++++ ++|+.+|++.|.+++++++||+|.                      +++++|+||..||++
T Consensus         2 i~v~diM~--~~~~~v~~-~~tl~~a~~~m~~~~~~~lpVvd~----------------------~~~~~Giit~~dl~~   56 (139)
T d2o16a3           2 IKVEDMMT--RHPHTLLR-THTLNDAKHLMEALDIRHVPIVDA----------------------NKKLLGIVSQRDLLA   56 (139)
T ss_dssp             CBGGGTSE--ESCCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEEEHHHHHH
T ss_pred             EEHHHhCc--CCCeEECC-cCCHHHHHHHHHHcCCCeeeeecc----------------------cccccccccHHHHHH
Confidence            47899995  57899999 999999999999999999999995                      368999999999999


Q ss_pred             Hhhhccc--CCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178           88 FLCKEEN--LLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDS  164 (412)
Q Consensus        88 ~l~~~~~--l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~  164 (412)
                      ++...-.  ..........||+++|...   ++++++++++.+|+++|. ++++++||+++                 ++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----------------~~  116 (139)
T d2o16a3          57 AQESSLQRSAQGDSLAFETPLFEVMHTD---VTSVAPQAGLKESAIYMQKHKIGCLPVVAK-----------------DV  116 (139)
T ss_dssp             HHHHHCC---------CCCBHHHHSCSC---EEEBCTTSBHHHHHHHHHHTTCSCEEEEET-----------------TE
T ss_pred             HHHhhhhhhhcccccccccchhHhhccc---cccccccchHHHHHHHHHHcCceEEEEEEC-----------------CE
Confidence            8765211  1111123468999999865   899999999999999999 99999999853                 56


Q ss_pred             eeeeecHHHHHHHHHH
Q 015178          165 EYCWLTQEDLIRYFLN  180 (412)
Q Consensus       165 ~v~iITq~DIv~~l~~  180 (412)
                      ++|+||.+||++++.+
T Consensus       117 lvGiit~~Dil~~~~~  132 (139)
T d2o16a3         117 LVGIITDSDFVTIAIN  132 (139)
T ss_dssp             EEEEECHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHHH
Confidence            8999999999999875

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.72  E-value=2.2e-17  Score=138.91  Aligned_cols=124  Identities=12%  Similarity=0.155  Sum_probs=108.6

Q ss_pred             ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178            5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD   84 (412)
Q Consensus         5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D   84 (412)
                      |...+|+|+|.  ++++++++ ++|+.+|++.|.+++++++||.+                       +++++|+++..|
T Consensus         1 l~~~~V~d~m~--~~~v~v~~-~~tl~~a~~~m~~~~~~~~pV~d-----------------------~~~~~Givt~~d   54 (127)
T d2ef7a1           1 MEEEIVKEYMK--TQVISVTK-DAKLNDIAKVMTEKNIGSVIVVD-----------------------GNKPVGIITERD   54 (127)
T ss_dssp             CCCCBGGGTSB--CSCCEEET-TCBHHHHHHHHHHHTCSEEEEEE-----------------------TTEEEEEEEHHH
T ss_pred             CCccCHHHhCC--CCCeEECC-cCcHHHHHHHHHHcCCceEEeec-----------------------ccchhhhcchhH
Confidence            45678999994  68999999 99999999999999999999998                       368999999999


Q ss_pred             HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178           85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND  163 (412)
Q Consensus        85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~  163 (412)
                      +++.+.+..       ....+++++|..+   +.++++++++.+|+++|. ++++++||+++                ++
T Consensus        55 l~~~~~~~~-------~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----------------~~  108 (127)
T d2ef7a1          55 IVKAIGKGK-------SLETKAEEFMTAS---LITIREDSPITGALALMRQFNIRHLPVVDD----------------KG  108 (127)
T ss_dssp             HHHHHHTTC-------CTTCBGGGTSEEC---CCCEETTSBHHHHHHHHHHHTCSEEEEECT----------------TS
T ss_pred             HHHHHHhhc-------cccchhhhhhhhh---ccccccccchhHHHHHHHHcCceEEEEEeC----------------CC
Confidence            999887532       1246799999755   889999999999999999 89999999853                36


Q ss_pred             CeeeeecHHHHHHHHHH
Q 015178          164 SEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       164 ~~v~iITq~DIv~~l~~  180 (412)
                      +++|+||..||++.+.+
T Consensus       109 ~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1         109 NLKGIISIRDITRAIDD  125 (127)
T ss_dssp             CEEEEEEHHHHHHHHHH
T ss_pred             eEEEEEEHHHHHHHHHh
Confidence            89999999999999865

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=2.2e-17  Score=140.60  Aligned_cols=129  Identities=16%  Similarity=0.194  Sum_probs=109.8

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      ++|+++|.  ++++++++ ++|+.+|++.|.+++++++||++.                      +++++|+++..|+++
T Consensus         2 ~~V~~iMt--~~v~~v~~-~~tl~~a~~~m~~~~~~~ipVv~~----------------------~~~~~g~i~~~di~~   56 (141)
T d3ddja1           2 FPVKVFMS--TKVQTIYK-EVRLDQAVKLMLRRGFRRLPVIDD----------------------DNKVVGIVTVVNAIK   56 (141)
T ss_dssp             CBHHHHSB--CSCCCEET-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEEHHHHHH
T ss_pred             EeeHHhCc--CCCeEEcC-cCcHHHHHHHHHHcCCCeeecccc----------------------cCccccccccccchh
Confidence            46899995  57999999 999999999999999999999996                      368999999999999


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      ++...............+++++|...   ++++++++++.+|+++|. ++++++||+++                +++++
T Consensus        57 ~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~----------------~~~~i  117 (141)
T d3ddja1          57 QLAKAVDKLDPDYFYGKVVKDVMVTN---LVTIDELASVNRAAAEMIVKRIGSLLILNK----------------DNTIR  117 (141)
T ss_dssp             HHHHHHHHTCTHHHHTCBHHHHSBCC---CCBCCTTSBHHHHHHHHHHHTCSEEEEECT----------------TSCEE
T ss_pred             hhhccccccccccccCCCHHHHhCcc---cccccccchhhHHHHHHHHcCCCEEEEEcc----------------CCEEE
Confidence            88643222222334567899999865   899999999999999999 99999999864                36799


Q ss_pred             eeecHHHHHHHHHH
Q 015178          167 CWLTQEDLIRYFLN  180 (412)
Q Consensus       167 ~iITq~DIv~~l~~  180 (412)
                      |+||.+||++.+.+
T Consensus       118 GiIt~~Dil~~l~~  131 (141)
T d3ddja1         118 GIITERDLLIALHH  131 (141)
T ss_dssp             EEEEHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHH
Confidence            99999999998875

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=3.1e-17  Score=140.04  Aligned_cols=131  Identities=17%  Similarity=0.163  Sum_probs=102.7

Q ss_pred             ccccchhcc-ccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            5 LLSVGVSDL-CIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         5 ~~~~~v~dl-~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      |...+++|+ +..+.+++++.. ++|+.+|+++|.+++++++||+|.                      +++++|++|..
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~-~~~v~~a~~~m~~~~~~~ipVvd~----------------------~~~~vG~it~~   59 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQM-TTPVIDVIQMLTQGRVSSVPIIDE----------------------NGYLINVYEAY   59 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEEEHH
T ss_pred             cccCcHHHhCCccCCCCEEEcC-cCcHHHHHHHHHHcCCcEEEEEec----------------------CCeEcceehhh
Confidence            345778888 455678999999 999999999999999999999996                      36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCC---CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcc
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEA---SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKST  159 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~---~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~  159 (412)
                      |+++++......     .+...+...+...   ..+++++.++++|.+|++.|. +++|++||+++              
T Consensus        60 Di~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~--------------  120 (140)
T d2nyca1          60 DVLGLIKGGIYN-----DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD--------------  120 (140)
T ss_dssp             HHHHHHHTC---------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT--------------
T ss_pred             HHHHHHhhcccc-----ccccchhhhhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeC--------------
Confidence            999998753211     1223344444211   244789999999999999999 89999999963              


Q ss_pred             cCCCCeeeeecHHHHHHHHH
Q 015178          160 FHNDSEYCWLTQEDLIRYFL  179 (412)
Q Consensus       160 ~~~~~~v~iITq~DIv~~l~  179 (412)
                        .++++|+||++||++++.
T Consensus       121 --~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1         121 --VGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             --TSBEEEEEEHHHHHHHHH
T ss_pred             --CCeEEEEEEHHHHHHHHh
Confidence              367999999999999985

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=6.8e-17  Score=136.83  Aligned_cols=123  Identities=14%  Similarity=0.124  Sum_probs=106.8

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      ...|+|+|.  ++++++++ ++|+.+|++.|.+++++++||+|+                      +++++|++|..||+
T Consensus         4 ~~pV~~im~--~~~~~v~~-~~t~~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Giit~~di~   58 (132)
T d2yzia1           4 KAPIKVYMT--KKLLGVKP-STSVQEASRLMMEFDVGSLVVIND----------------------DGNVVGFFTKSDII   58 (132)
T ss_dssp             TSBGGGTCB--CCCCEECT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEEHHHHH
T ss_pred             CCcHHHHcC--CCCeEECC-cCcHHHHHHHHHHcCCcEEEEecc----------------------cceeeeeeeHHHHH
Confidence            456999995  67999999 999999999999999999999996                      36899999999999


Q ss_pred             HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178           87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE  165 (412)
Q Consensus        87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~  165 (412)
                      +.+...+.      ....|++++|...   +.++++++++.+|+++|. ++++++||.+                 ++++
T Consensus        59 ~~~~~~~~------~~~~~v~~im~~~---~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-----------------~~~~  112 (132)
T d2yzia1          59 RRVIVPGL------PYDIPVERIMTRN---LITANVNTPLGEVLRKMAEHRIKHILIEE-----------------EGKI  112 (132)
T ss_dssp             HHTTTTCC------CTTSBGGGTCBCS---CCEEETTSBHHHHHHHHHHHTCSEEEEEE-----------------TTEE
T ss_pred             HHHhhccC------ccceeEeeccccc---ccccCcchHHHHHHHHHHHcCCCEEEEEE-----------------CCEE
Confidence            98765322      2357899999855   889999999999999999 8999999863                 3578


Q ss_pred             eeeecHHHHHHHHHH
Q 015178          166 YCWLTQEDLIRYFLN  180 (412)
Q Consensus       166 v~iITq~DIv~~l~~  180 (412)
                      +|+||+.||++.+.+
T Consensus       113 vGivt~~Dil~a~~~  127 (132)
T d2yzia1         113 VGIFTLSDLLEASRR  127 (132)
T ss_dssp             EEEEEHHHHHHHHHC
T ss_pred             EEEEEHHHHHHHHHH
Confidence            999999999998764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.69  E-value=3.6e-17  Score=140.40  Aligned_cols=124  Identities=15%  Similarity=0.185  Sum_probs=106.7

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      ++|+|+|.  ++++++++ ++|+.+|++.|.+++++++||+|.                      +++++|+||..||++
T Consensus         3 m~v~dim~--~~~~~v~~-~~tl~~a~~~m~~~~~~~~~V~d~----------------------~~~~~Giit~~di~~   57 (142)
T d1pvma4           3 MRVEKIMN--SNFKTVNW-NTTVFDAVKIMNENHLYGLVVKDD----------------------NGNDVGLLSERSIIK   57 (142)
T ss_dssp             CBGGGTSB--TTCCEEET-TCBHHHHHHHHHHHTCCEEEEECT----------------------TSCEEEEEEHHHHHH
T ss_pred             EEHHHhCC--CCCcEECC-cCcHHHHHHHHHHCCCceEeeecc----------------------CCcccceEEeechhh
Confidence            67999995  67999999 999999999999999999999995                      368999999999998


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      .+...+.     .....+++++|...   +++++++++|.+|+++|. ++++++||+++                +++++
T Consensus        58 ~~~~~~~-----~~~~~~v~~im~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----------------~g~l~  113 (142)
T d1pvma4          58 RFIPRNK-----KPDEVPIRLVMRKP---IPKVKSDYDVKDVAAYLSENGLERCAVVDD----------------PGRVV  113 (142)
T ss_dssp             HTGGGCC-----CGGGSBGGGTSBSS---CCEEETTCBHHHHHHHHHHHTCSEEEEECT----------------TCCEE
T ss_pred             hhhhhcc-----cccccccccccccc---cccccchhhHHHHHHHHHHcCCcEEEEEec----------------CCEEE
Confidence            7654211     12346899999865   899999999999999999 99999999864                36799


Q ss_pred             eeecHHHHHHHHHH
Q 015178          167 CWLTQEDLIRYFLN  180 (412)
Q Consensus       167 ~iITq~DIv~~l~~  180 (412)
                      |+||..||++++.+
T Consensus       114 Giit~~Dil~~l~~  127 (142)
T d1pvma4         114 GIVTLTDLSRYLSR  127 (142)
T ss_dssp             EEEEHHHHTTTSCH
T ss_pred             EEEEHHHHHHHHhh
Confidence            99999999998754

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=6.7e-17  Score=138.52  Aligned_cols=132  Identities=17%  Similarity=0.188  Sum_probs=107.2

Q ss_pred             ccccchhccccCC-CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            5 LLSVGVSDLCIGK-PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         5 ~~~~~v~dl~~~~-~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      |.+.+++++..++ ++++++++ ++|+.+|++.|.+++++++||+|.                      +++++|++|..
T Consensus         6 f~~~~l~~l~i~~~~~v~~v~~-~~tv~eal~~m~~~~~~~lpVvd~----------------------~~~~~Gvit~~   62 (145)
T d2v8qe1           6 FMSKSLEELQIGTYANIAMVRT-TTPVYVALGIFVQHRVSALPVVDE----------------------KGRVVDIYSKF   62 (145)
T ss_dssp             GGGSBHHHHTCSBCSSCCCEET-TCBHHHHHHHHHHHCCSEEEEECT----------------------TSBEEEEEEGG
T ss_pred             HhhCCHHHHcCCCCCCceEEcC-cCcHHHHHHHHHHcCCCccccccc----------------------CCceEEEEEcc
Confidence            3456899998754 47999999 999999999999999999999996                      36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCC---CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcc
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEA---SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKST  159 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~---~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~  159 (412)
                      ||+.++.....     .....++.+.+...   ..+++++.+++++.++++.|. +++|++||+++              
T Consensus        63 di~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--------------  123 (145)
T d2v8qe1          63 DVINLAAEKTY-----NNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE--------------  123 (145)
T ss_dssp             GTGGGGGSSCC-----CCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT--------------
T ss_pred             hhhhhhhcccc-----cchhhhhhhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc--------------
Confidence            99988765221     12345565555422   244789999999999999999 99999999853              


Q ss_pred             cCCCCeeeeecHHHHHHHHHH
Q 015178          160 FHNDSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       160 ~~~~~~v~iITq~DIv~~l~~  180 (412)
                        +++++|+||++||+++|..
T Consensus       124 --~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1         124 --HDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             --TSBEEEEEEHHHHHHHHHS
T ss_pred             --CCEEEEEEEHHHHHHHHHh
Confidence              3678999999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=2e-16  Score=135.29  Aligned_cols=129  Identities=8%  Similarity=0.052  Sum_probs=103.5

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      ..+.++|.  ...+++++ ++|+.+|++.|.+++++++||+|+                      +++++|+||..||+.
T Consensus         4 ~~v~~~m~--~~p~~v~~-~~~v~~a~~~m~~~~~~~ipVvd~----------------------~~~~vGiis~~Dl~~   58 (145)
T d1o50a3           4 KDVCKLIS--LKPTVVEE-DTPIEEIVDRILEDPVTRTVYVAR----------------------DNKLVGMIPVMHLLK   58 (145)
T ss_dssp             HHHTTSSC--CCCEEECT-TCBHHHHHHHHHHSTTCCEEEEEE----------------------TTEEEEEEEHHHHHH
T ss_pred             eEhHHhCC--CCCEEECC-cCcHHHHHHHHHHcCCceEEEecc----------------------Ccceeeeeccchhhh
Confidence            34566674  56799999 999999999999999999999996                      368999999999999


Q ss_pred             Hhhhcc--cC-------CCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCC
Q 015178           88 FLCKEE--NL-------LNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLK  157 (412)
Q Consensus        88 ~l~~~~--~l-------~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~  157 (412)
                      ++....  ..       .........+++++|..    ++++.+++++.+|+++|. ++++++||+++            
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~------------  122 (145)
T d1o50a3          59 VSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD----PVYVHMDTPLEEALKLMIDNNIQEMPVVDE------------  122 (145)
T ss_dssp             HHHHHHHCCCC-------CCCCCSSCBHHHHCBC----CCCBCTTSBHHHHHHHHHHHTCSEEEEECT------------
T ss_pred             hhhcccccccchhHHHHhhhhhccccCHHHHcCC----CEEEcCCCCHHHHHHHHHHcCceEEEEEeC------------
Confidence            876310  00       01112234567777752    578999999999999999 99999999863            


Q ss_pred             cccCCCCeeeeecHHHHHHHHHHc
Q 015178          158 STFHNDSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       158 ~~~~~~~~v~iITq~DIv~~l~~~  181 (412)
                          +++++|+||++||++++++.
T Consensus       123 ----~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3         123 ----KGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             ----TSCEEEEEEHHHHHHHHHHS
T ss_pred             ----CCeEEEEEEHHHHHHHHHhc
Confidence                36899999999999999874

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.68  E-value=9.8e-17  Score=133.63  Aligned_cols=117  Identities=16%  Similarity=0.275  Sum_probs=102.5

Q ss_pred             chhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH
Q 015178            9 GVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF   88 (412)
Q Consensus         9 ~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~   88 (412)
                      .|+|+|.  ++++++++ ++|+.+|++.|.+++++++||.+                       +++++|++|..||+++
T Consensus         1 kV~diM~--~~~~~v~~-~~sl~ea~~~~~~~~~~~~~V~~-----------------------~~~~~Gvit~~Di~~~   54 (120)
T d1pbja3           1 RVEDVMV--TDVDTIDI-TASLEDVLRNYVENAKGSSVVVK-----------------------EGVRVGIVTTWDVLEA   54 (120)
T ss_dssp             CHHHHCB--CSCCEEET-TCBHHHHHHHHHHHCCCEEEEEE-----------------------TTEEEEEEEHHHHHHH
T ss_pred             ChHHhCC--CCCeEECC-cCcHHHHHHHHHHcCceEEEEEe-----------------------CCcEEEEEEeeecccc
Confidence            4789995  68999999 99999999999999999999998                       3689999999999999


Q ss_pred             hhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178           89 LCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC  167 (412)
Q Consensus        89 l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~  167 (412)
                      +......      .+.+++++|...   +.++++++++.+|++.|. ++++++||.+                 +++++|
T Consensus        55 l~~~~~~------~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-----------------~~~l~G  108 (120)
T d1pbja3          55 IAEGDDL------AEVKVWEVMERD---LVTISPRATIKEAAEKMVKNVVWRLLVEE-----------------DDEIIG  108 (120)
T ss_dssp             HHHTCCT------TTSBHHHHCBCG---GGEECTTSCHHHHHHHHHHHTCSEEEEEE-----------------TTEEEE
T ss_pred             ccccccc------cceeEeeecccc---cccccchhHHHHHHHHHHHcCCeEEEEEE-----------------CCEEEE
Confidence            8864322      257899999865   899999999999999999 8999999863                 257899


Q ss_pred             eecHHHHHHH
Q 015178          168 WLTQEDLIRY  177 (412)
Q Consensus       168 iITq~DIv~~  177 (412)
                      +||.+||++.
T Consensus       109 ivt~~Dil~A  118 (120)
T d1pbja3         109 VISATDILRA  118 (120)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEEHHHHHhc
Confidence            9999999985

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.68  E-value=1.7e-16  Score=137.54  Aligned_cols=127  Identities=18%  Similarity=0.208  Sum_probs=106.2

Q ss_pred             hhccccCC-CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH
Q 015178           10 VSDLCIGK-PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF   88 (412)
Q Consensus        10 v~dl~~~~-~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~   88 (412)
                      +++++.++ .+++++.+ ++|+.+|+++|.+++++++||+|.                      +++++|+++..||+.+
T Consensus         3 l~~~~ig~~~~vv~v~~-~~~v~~a~~~m~~~~~~~lpVvd~----------------------~~~~vG~it~~Dl~~~   59 (153)
T d2ooxe2           3 LNQMTIGTWSNLATASM-ETKVYDVIKMLAEKNISAVPIVNS----------------------EGTLLNVYESVDVMHL   59 (153)
T ss_dssp             GGGTCCSBCSSCCCBCT-TSBHHHHHHHHHHTTCSEEEEECG----------------------GGBEEEEEEHHHHHHH
T ss_pred             HHHcCCCCCCCCeEEeC-cCcHHHHHHHHHHcCcceEeeecc----------------------cceEEEEEEeeeeeeh
Confidence            56777654 47999999 999999999999999999999996                      3689999999999998


Q ss_pred             hhhcccCCCcccccCCchhhhccCC---CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178           89 LCKEENLLNPESALQDPVSVLLPEA---SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDS  164 (412)
Q Consensus        89 l~~~~~l~~~~~~l~~~V~dvm~~~---~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~  164 (412)
                      +.....     .....+++++|...   ..+++++.++++|.++++.|. ++++++||+++                +++
T Consensus        60 ~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----------------~~~  118 (153)
T d2ooxe2          60 IQDGDY-----SNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE----------------NLK  118 (153)
T ss_dssp             HGGGCG-----GGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT----------------TCB
T ss_pred             hccccc-----cccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC----------------CCE
Confidence            875321     12356788888543   345889999999999999999 99999999863                367


Q ss_pred             eeeeecHHHHHHHHHH
Q 015178          165 EYCWLTQEDLIRYFLN  180 (412)
Q Consensus       165 ~v~iITq~DIv~~l~~  180 (412)
                      ++|+||++||++|+..
T Consensus       119 lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2         119 LEGILSLADILNYIIY  134 (153)
T ss_dssp             EEEEEEHHHHHHHHHS
T ss_pred             EEEEEEHHHHHHHHHc
Confidence            9999999999999864

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.9e-16  Score=136.12  Aligned_cols=138  Identities=16%  Similarity=0.158  Sum_probs=94.8

Q ss_pred             EEEEeCCCcHHHHHHHHHhcCCCCceeEEE--cCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhH
Q 015178          204 IFAIQYDEPAAFAIPLIAQSHINQTSVALV--DEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLV  281 (412)
Q Consensus       204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV--d~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~  281 (412)
                      ++++.+++|+.+|+++|.++++  +++|||  +++|+++|+                   +|.+|++.++...       
T Consensus        19 ~v~~~~~~tv~~a~~ll~~~~~--~~~PVV~~~~~~~lvG~-------------------is~~dl~~~l~~~-------   70 (169)
T d2j9la1          19 TVLTQDSMTVEDVETIISETTY--SGFPVVVSRESQRLVGF-------------------VLRRDLIISIENA-------   70 (169)
T ss_dssp             CCEESSCEEHHHHHHHHHHCCC--SEEEEESCTTTCBEEEE-------------------EEHHHHHHHHHHH-------
T ss_pred             EEECCCcCCHHHHHHHHHHcCC--CceeeeecCCCCeEEEE-------------------EEhHHHHHHHhcc-------
Confidence            3456678899999999999999  999999  456799999                   5566666543100       


Q ss_pred             HHHHHHhhhhhhhH-HHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178          282 RLVKQRLEEKSMVG-FLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA  360 (412)
Q Consensus       282 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m  360 (412)
                           ......... ....+.        ..     .      ............++++|.+++++|.|++++.+++++|
T Consensus        71 -----~~~~~~~~~~~~~~~~--------~~-----~------~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~  126 (169)
T d2j9la1          71 -----RKKQDGVVSTSIIYFT--------EH-----S------PPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIF  126 (169)
T ss_dssp             -----HTSCSCCCTTCEEECS--------SS-----C------CCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHH
T ss_pred             -----cccccccccchhhhhc--------cc-----c------hhhhhccccccchhhhccCCCEEECCCCcHHHHHHHH
Confidence                 000000000 000000        00     0      0000011122446789999999999999999999999


Q ss_pred             HHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178          361 LARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL  394 (412)
Q Consensus       361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~  394 (412)
                      .+++++++||+| +|+++||||++||++++.+..
T Consensus       127 ~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~~  159 (169)
T d2j9la1         127 RKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMA  159 (169)
T ss_dssp             HHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHC
T ss_pred             HhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHh
Confidence            999999999887 589999999999999998743

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.65  E-value=3.5e-16  Score=135.14  Aligned_cols=130  Identities=12%  Similarity=0.154  Sum_probs=103.9

Q ss_pred             ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178            7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII   86 (412)
Q Consensus         7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil   86 (412)
                      +.+|+|+|.  ++++++++ ++|+.+|+++|.+++++++||+|+..                    .+.++|+++..|++
T Consensus        10 ~~~V~diM~--~~~~~v~~-~~tv~e~~~~l~~~~~~~~PVvd~~~--------------------~~~lvg~is~~dl~   66 (160)
T d2d4za3          10 NIQVGDIMV--RDVTSIAS-TSTYGDLLHVLRQTKLKFFPFVDTPD--------------------TNTLLGSIDRTEVE   66 (160)
T ss_dssp             SCBTTSSSB--SSCCCEET-TCBHHHHHHHHHHCCCSEEEEESCTT--------------------TCBEEEEEEHHHHH
T ss_pred             ceEHHHhcC--CCCeEECC-CCcHHHHHHHHHhcCCCccccccccc--------------------cccccccchHHHHH
Confidence            678999995  68999999 99999999999999999999999643                    36899999999999


Q ss_pred             HHhhhc---ccC--CCc--------------ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCC
Q 015178           87 SFLCKE---ENL--LNP--------------ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPA  146 (412)
Q Consensus        87 ~~l~~~---~~l--~~~--------------~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~  146 (412)
                      ..+...   ...  .+.              .......+.++|...   +++++++++|.+|+++|. +|++|+||++  
T Consensus        67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--  141 (160)
T d2d4za3          67 GLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQS---PFQLVEGTSLQKTHTLFSLLGLDRAYVTS--  141 (160)
T ss_dssp             HHHHHHHHTTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEECC---SCCBCTTCBHHHHHHHHHHHTCSEEEEEE--
T ss_pred             HHHhhccccccccchhhccccchhhhhhhhhcccccceeeecccCC---CEEEcCCCCHHHHHHHHHHcCCeEEEEEE--
Confidence            987641   000  000              001123355666544   889999999999999999 8999999974  


Q ss_pred             CCCCCCCCCCCcccCCCCeeeeecHHHHHHHHH
Q 015178          147 GTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL  179 (412)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~  179 (412)
                                     +|+++||||++||+|.|.
T Consensus       142 ---------------~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         142 ---------------MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             ---------------TTEEEEEEEHHHHHHHHH
T ss_pred             ---------------CCEEEEEEEHHHHHHHhC
Confidence                           267999999999999863

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.64  E-value=1.3e-16  Score=134.98  Aligned_cols=127  Identities=13%  Similarity=0.113  Sum_probs=105.8

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      |+|+|+|.  ++++++++ ++|+.+|++.|.+++++++||+|.                        +++|+++..|++.
T Consensus         1 m~V~~lM~--~~~~~v~~-~~tl~~a~~~m~~~~~~~l~V~d~------------------------~lvg~~~~~~~~~   53 (135)
T d3ddja2           1 MNIETLMI--KNPPILSK-EDRLGSAFKKINEGGIGRIIVANE------------------------KIEGLLTTRDLLS   53 (135)
T ss_dssp             SSGGGTCE--ESCCEECT-TSBHHHHHHHTTGGGCCEEEEESS------------------------SEEEEEEHHHHHG
T ss_pred             CEeeEEee--CCCeEECC-CCcHHHHHHHHHHhCCeEEEEEec------------------------ceeceeeccchhh
Confidence            57999996  45778999 999999999999999999999983                        5999999999999


Q ss_pred             HhhhcccCCCc----ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           88 FLCKEENLLNP----ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        88 ~l~~~~~l~~~----~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ++.........    ......+++++|...   ++++.+++++.+|+++|. ++++++||+++                +
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~----------------~  114 (135)
T d3ddja2          54 TVESYCKDSCSQGDLYHISTTPIIDYMTPN---PVTVYNTSDEFTAINIMVTRNFGSLPVVDI----------------N  114 (135)
T ss_dssp             GGTTCC---CCHHHHHHHHTSBGGGTSEES---CCCEETTSCHHHHHHHHHHHTCSEEEEECT----------------T
T ss_pred             hhccccccchhhhhccccccCCHHHHhCCc---cceEEeccccchhhhhhhhcceeEEEEEeC----------------C
Confidence            88643221111    122467899999866   889999999999999999 99999999963                4


Q ss_pred             CCeeeeecHHHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~  180 (412)
                      |+++|+||.+||++++.+
T Consensus       115 g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2         115 DKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             SCEEEEEEHHHHGGGGGG
T ss_pred             CEEEEEEEHHHHHHHHHH
Confidence            689999999999998753

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.62  E-value=1.2e-15  Score=128.27  Aligned_cols=123  Identities=15%  Similarity=0.124  Sum_probs=100.1

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      ++|+|+|.  ++++++++ ++|+.+|++.|.+++++++||++.+.                    +++++|+++..|+++
T Consensus         1 ~~V~dim~--~~~v~v~~-~~tl~ea~~~m~~~~~~~~~Vv~~d~--------------------~~~~iGi~~~~dl~~   57 (131)
T d2riha1           1 IRTSELLK--RPPVSLPE-TATIREVATELAKNRVGLAVLTARDN--------------------PKRPVAVVSERDILR   57 (131)
T ss_dssp             CBGGGGCC--SCCEEEET-TCBHHHHHHHHHHHTCSEEEEEETTE--------------------EEEEEEEEEHHHHHH
T ss_pred             CCHHHhcc--CCCEEECC-CCcHHHHHHHHHHhCCCcEEEEEEcC--------------------CCEEEEEEeeecccc
Confidence            47999994  67899999 99999999999999999999997542                    478999999999999


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      ++......       ...+.. +..   ++.++.+++++.+|+++|. ++++++||+++                +++++
T Consensus        58 ~~~~~~~~-------~~~~~~-~~~---~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~----------------~g~l~  110 (131)
T d2riha1          58 AVAQRLDL-------DGPAMP-IAN---SPITVLDTDPVHVAAEKMRRHNIRHVVVVNK----------------NGELV  110 (131)
T ss_dssp             HHHTTCCT-------TSBSGG-GCB---CCCEEETTSBHHHHHHHHHHHTCSEEEEECT----------------TSCEE
T ss_pred             cccccccc-------cccccc-ccc---cceeEeeecchHHHHHHHHHCCeEEEEEEcC----------------CCeEE
Confidence            88753211       122222 322   2678999999999999999 99999999863                36799


Q ss_pred             eeecHHHHHHHHHH
Q 015178          167 CWLTQEDLIRYFLN  180 (412)
Q Consensus       167 ~iITq~DIv~~l~~  180 (412)
                      |+||+.||++++..
T Consensus       111 Giit~~Dll~~~~~  124 (131)
T d2riha1         111 GVLSIRDLCFERAI  124 (131)
T ss_dssp             EEEEHHHHHSCHHH
T ss_pred             EEEEHHHHHHHHHH
Confidence            99999999987653

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=1.5e-16  Score=132.95  Aligned_cols=116  Identities=16%  Similarity=0.234  Sum_probs=83.7

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      |+|+|+|.  ++++++++ ++|+.+|+++|.+++++++||+|+                      +++|+|+|+..|++.
T Consensus         1 m~v~diM~--~~~v~v~~-~~~v~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~G~it~~dl~~   55 (122)
T d2yzqa2           1 MRVKTIMT--QNPVTITL-PATRNYALELFKKYKVRSFPVVNK----------------------EGKLVGIISVKRILV   55 (122)
T ss_dssp             CBHHHHSE--ESCCCEES-SCC------------CCEEEEECT----------------------TCCEEEEEESSCC--
T ss_pred             CCcccccC--CCCEEECC-cCcHHHHHHHHHHcCCcEEEEEec----------------------cccchhhhhcchhhh
Confidence            57899995  57899999 999999999999999999999996                      368999999999986


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      ...            +.++.++|.++   ++++++++++.+|+++|. ++++++||+++                +++++
T Consensus        56 ~~~------------~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~----------------~~~li  104 (122)
T d2yzqa2          56 NPD------------EEQLAMLVKRD---VPVVKENDTLKKAAKLMLEYDYRRVVVVDS----------------KGKPV  104 (122)
T ss_dssp             --------------------CCCBSC---CCEEETTSBHHHHHHHHHHHTCSEEEEECT----------------TSCEE
T ss_pred             hhc------------ccchhhccccc---eeecchhhHHHHHHHHHHHcCcEEEEEEeC----------------CCEEE
Confidence            422            34688888766   889999999999999999 99999999963                36899


Q ss_pred             eeecHHHHHHHHH
Q 015178          167 CWLTQEDLIRYFL  179 (412)
Q Consensus       167 ~iITq~DIv~~l~  179 (412)
                      |+||..||++.+.
T Consensus       105 Giit~~dil~~~~  117 (122)
T d2yzqa2         105 GILTVGDIIRRYF  117 (122)
T ss_dssp             EEEEHHHHHHHTT
T ss_pred             EEEEHHHHHHHHH
Confidence            9999999998654

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-15  Score=132.97  Aligned_cols=133  Identities=17%  Similarity=0.146  Sum_probs=103.7

Q ss_pred             cchhccccCC---CCe-EEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            8 VGVSDLCIGK---PAL-RSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         8 ~~v~dl~~~~---~~l-v~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      ..++|+|...   +.+ +.+.. +.|+.+|+++|.+++++++||+++++                    +++++|+|+..
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~-~~tv~~a~~ll~~~~~~~~PVV~~~~--------------------~~~lvG~is~~   61 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQD-SMTVEDVETIISETTYSGFPVVVSRE--------------------SQRLVGFVLRR   61 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESS-CEEHHHHHHHHHHCCCSEEEEESCTT--------------------TCBEEEEEEHH
T ss_pred             cchhhhcCcCCCCCceEEECCC-cCCHHHHHHHHHHcCCCceeeeecCC--------------------CCeEEEEEEhH
Confidence            4578999643   233 55567 88999999999999999999997543                    46899999999


Q ss_pred             HHHHHhhhc----ccCC--------------CcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecC
Q 015178           84 DIISFLCKE----ENLL--------------NPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPL  144 (412)
Q Consensus        84 Dil~~l~~~----~~l~--------------~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~  144 (412)
                      ||+.++...    +...              ........+|+++|...   +.++.++++|.+|+++|. +|++++||.+
T Consensus        62 dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~tv~~~~~l~~v~~~~~~~~~~~l~V~d  138 (169)
T d2j9la1          62 DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS---PFTVTDLTPMEIVVDIFRKLGLRQCLVTH  138 (169)
T ss_dssp             HHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESS---CCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             HHHHHHhcccccccccccchhhhhcccchhhhhccccccchhhhccCC---CEEECCCCcHHHHHHHHHhcCceEEEEEE
Confidence            999988631    1000              00112235689999865   889999999999999999 8999998863


Q ss_pred             CCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHc
Q 015178          145 PAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~  181 (412)
                                       +++++|+||++||++++.+.
T Consensus       139 -----------------~g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1         139 -----------------NGRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             -----------------TTEEEEEEEHHHHHHHHHHH
T ss_pred             -----------------CCEEEEEEEHHHHHHHHHHH
Confidence                             35789999999999999874

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.61  E-value=9.4e-16  Score=129.07  Aligned_cols=116  Identities=15%  Similarity=0.149  Sum_probs=101.2

Q ss_pred             chhccccCCCCeEEEecCCchHHHHHHHHHhc-----CCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            9 GVSDLCIGKPALRSLSVSSSTVADALSALKRL-----NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         9 ~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~-----~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      |++.||.  ++++++++ ++||.+|++.|.++     ++..+||+|.                      +++++|+++..
T Consensus         2 taG~iM~--~d~i~v~~-~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~----------------------~~~l~G~v~~~   56 (127)
T d2ouxa2           2 TAGAIMT--TEFVSIVA-NQTVRSAMYVLKNQADMAETIYYVYVVDQ----------------------ENHLVGVISLR   56 (127)
T ss_dssp             BHHHHCB--SCCCEECS-SSBHHHHHHHHHHHCSSCSCCSEEEEECT----------------------TCBEEEEEEHH
T ss_pred             ChhHhCC--CCcEEECC-CCcHHHHHHHhHhhcccccceeeeEEEec----------------------CCeEEEEEEee
Confidence            6789994  68999999 99999999999887     4899999996                      46899999998


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      |++..            ....+|+++|...   ++++.+++++.+|+++|. ++++++||+++                +
T Consensus        57 ~l~~~------------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~----------------~  105 (127)
T d2ouxa2          57 DLIVN------------DDDTLIADILNER---VISVHVGDDQEDVAQTIRDYDFLAVPVTDY----------------D  105 (127)
T ss_dssp             HHTTS------------CTTSBHHHHSBSC---CCCEETTSBHHHHHHHHHHHTCSEEEEECT----------------T
T ss_pred             ccccc------------cccEEhhhhccCC---CccCCCCCCHHHHHHHHHHhCCEEEEEEeC----------------C
Confidence            87642            1247899999866   889999999999999999 99999999963                3


Q ss_pred             CCeeeeecHHHHHHHHHH
Q 015178          163 DSEYCWLTQEDLIRYFLN  180 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~  180 (412)
                      ++++|+||..||++++.+
T Consensus       106 g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2         106 DHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             CBEEEEEEHHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHH
Confidence            689999999999999865

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=5.3e-16  Score=133.44  Aligned_cols=117  Identities=17%  Similarity=0.145  Sum_probs=101.9

Q ss_pred             chhccccCCCCeEEEecCCchHHHHHHHHHhc-----CCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178            9 GVSDLCIGKPALRSLSVSSSTVADALSALKRL-----NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV   83 (412)
Q Consensus         9 ~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~-----~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~   83 (412)
                      |++.||.  ++++++++ ++||.+|++.|.++     ++.++||+|.                      .++++|+++..
T Consensus         2 taG~iM~--~~~itv~~-~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~----------------------~~~l~G~v~~~   56 (144)
T d2yvxa2           2 EAGGLMT--PEYVAVRE-GMTVEEVLRFLRRAAPDAETIYYIYVVDE----------------------KGRLKGVLSLR   56 (144)
T ss_dssp             SSGGGCB--SCCCEECS-SCBHHHHHHHSSSSCTTSSCSSBCEEBCT----------------------TCBBCCBCBHH
T ss_pred             CcccccC--CCCEEECC-CCcHHHHHHHHHHhcccccceeeeEEecC----------------------CCCEecccchh
Confidence            6789995  68999999 99999999999887     4899999996                      36899999999


Q ss_pred             HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178           84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN  162 (412)
Q Consensus        84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~  162 (412)
                      ||....            ...+++++|...   ++++.+++++.+|+++|. ++++++||+++                +
T Consensus        57 dl~~~~------------~~~~v~~im~~~---~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~----------------~  105 (144)
T d2yvxa2          57 DLIVAD------------PRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDE----------------E  105 (144)
T ss_dssp             HHTTSC------------TTCBSTTTSBSS---CCCEESSCCHHHHHHHHHHSCCSEEEEECS----------------S
T ss_pred             hhhhcc------------cccchHHhcccC---CccCCCCChHHHHHHHHHHcCCCEEEEEeE----------------C
Confidence            986531            246799999866   889999999999999999 99999999963                3


Q ss_pred             CCeeeeecHHHHHHHHHHc
Q 015178          163 DSEYCWLTQEDLIRYFLNC  181 (412)
Q Consensus       163 ~~~v~iITq~DIv~~l~~~  181 (412)
                      ++++|+||..||++.+.+.
T Consensus       106 g~lvGiIt~~Dil~~l~~e  124 (144)
T d2yvxa2         106 GRLVGIVTVDDVLDVLEAE  124 (144)
T ss_dssp             CBEEEEEEHHHHHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHHH
Confidence            6899999999999998763

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=3.9e-15  Score=123.94  Aligned_cols=117  Identities=14%  Similarity=0.091  Sum_probs=102.7

Q ss_pred             cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178            8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS   87 (412)
Q Consensus         8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~   87 (412)
                      |+|+++|.  ++++++++ ++|+.+|++.|.+++.+++||+|.                      +++++|+++..|+++
T Consensus         1 m~v~~~m~--~~~~~v~~-~~tv~ea~~~m~~~~~~~v~Vvd~----------------------~~~~~Gii~~~dl~~   55 (121)
T d1vr9a3           1 MKVKKWVT--QDFPMVEE-SATVRECLHRMRQYQTNECIVKDR----------------------EGHFRGVVNKEDLLD   55 (121)
T ss_dssp             CBGGGGCB--SCSCEEET-TCBHHHHHHHHHHTTSSEEEEECT----------------------TSBEEEEEEGGGGTT
T ss_pred             CCchhhhc--CCCeEECC-CCCHHHHHHhhhhcCcEEEEEEeC----------------------CceeEEEeehhhhhh
Confidence            57899995  67899999 999999999999999999999985                      468999999999975


Q ss_pred             HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178           88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY  166 (412)
Q Consensus        88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v  166 (412)
                      +.            ...++.++|...   ++++++++++.++++.|. +++.++||+++                +++++
T Consensus        56 ~~------------~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~lpVvde----------------~g~~~  104 (121)
T d1vr9a3          56 LD------------LDSSVFNKVSLP---DFFVHEEDNITHALLLFLEHQEPYLPVVDE----------------EMRLK  104 (121)
T ss_dssp             SC------------TTSBSGGGCBCT---TCCEETTSBHHHHHHHHHHCCCSEEEEECT----------------TCBEE
T ss_pred             hh------------ccccccccccCc---cEEECCCCCHHHHHHHHHhcCceeeeeECC----------------CCeEE
Confidence            31            136799999855   789999999999999999 89999999864                46799


Q ss_pred             eeecHHHHHHHHHH
Q 015178          167 CWLTQEDLIRYFLN  180 (412)
Q Consensus       167 ~iITq~DIv~~l~~  180 (412)
                      |+||..|+++++.+
T Consensus       105 Gvit~~dil~~l~~  118 (121)
T d1vr9a3         105 GAVSLHDFLEALIE  118 (121)
T ss_dssp             EEEEHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHH
Confidence            99999999999876

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.58  E-value=3.5e-15  Score=125.09  Aligned_cols=111  Identities=14%  Similarity=0.075  Sum_probs=90.4

Q ss_pred             CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178           19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP   98 (412)
Q Consensus        19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~   98 (412)
                      +++++++ ++|+.+|+++|.+++++++||+|+.+                    +++++|+||..||......       
T Consensus         6 dpvtv~~-~~tv~~a~~~m~~~~~~~~pVvD~~~--------------------~~~lvGivt~~Di~~~~~~-------   57 (126)
T d1zfja4           6 DPFFLTP-EHKVSEAEELMQRYRISGVPIVETLA--------------------NRKLVGIITNRDMRFISDY-------   57 (126)
T ss_dssp             SCCCBCS-SSBHHHHHHHHHHTTCSEEEEESCTT--------------------TCBEEEEEEHHHHHHCSCS-------
T ss_pred             CceEECC-CCCHHHHHHHHHHhCCCcEEEEeecc--------------------CCeEEEEeEHHHHHHhhcc-------
Confidence            4579999 99999999999999999999999532                    3689999999998765332       


Q ss_pred             ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178           99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY  177 (412)
Q Consensus        99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~  177 (412)
                          +.++...|..  .+++++.+++++.+|+++|. ++++++||+++                +++++||||..||++.
T Consensus        58 ----~~~~~~~~~~--~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~----------------~g~lvGiiT~~Dil~~  115 (126)
T d1zfja4          58 ----NAPISEHMTS--EHLVTAAVGTDLETAERILHEHRIEKLPLVDN----------------SGRLSGLITIKDIEKV  115 (126)
T ss_dssp             ----SSBTTTSCCC--SCCCCEETTCCHHHHHHHHHHTTCSEEEEECT----------------TSBEEEEEEHHHHHHH
T ss_pred             ----CCceeeeeec--cceeecCCCCCHHHHHHHHHhcCCcEEEEEcC----------------CCeEEEEEEHHHHHHH
Confidence                1233333321  23788999999999999999 99999999963                3689999999999998


Q ss_pred             HH
Q 015178          178 FL  179 (412)
Q Consensus       178 l~  179 (412)
                      +.
T Consensus       116 ~~  117 (126)
T d1zfja4         116 IE  117 (126)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.48  E-value=2.1e-15  Score=125.70  Aligned_cols=105  Identities=11%  Similarity=0.074  Sum_probs=51.4

Q ss_pred             eEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCccc
Q 015178          117 IRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINS  195 (412)
Q Consensus       117 ~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~  195 (412)
                      +++++|++||.+|+++|. ++++++||+++..             .+++++||||..|+........       ..++.+
T Consensus         6 pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~-------------~~~~lvGivT~~Di~~~~~~~~-------~~~~~~   65 (120)
T d1jr1a4           6 PVVLSPKDRVRDVFEAKARHGFCGIPITDTGR-------------MGSRLVGIISSRDIDFLKEEEH-------DRFLEE   65 (120)
T ss_dssp             TCC----CCCC--CCBC----------------------------CTTCCC-----------------------------
T ss_pred             CEEECCcCCHHHHHHHHHHhCCCeEEEeeccc-------------cCCeEeeeeeeeeeeehhcccc-------CceeEE
Confidence            358999999999999999 8999999986522             2467899999999854332211       223333


Q ss_pred             ccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeec
Q 015178          196 LNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDIS  244 (412)
Q Consensus       196 L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS  244 (412)
                      ...+.++ ++++.+++++.+|+++|.++++  +.+||||++|+++|+||
T Consensus        66 ~~~~~~~-~~~v~~~~~~~~a~~~m~~~~i--~~lpVVd~~~~lvGiiT  111 (120)
T d1jr1a4          66 IMTKRED-LVVAPAGITLKEANEILQRSKK--GKLPIVNENDELVAIIA  111 (120)
T ss_dssp             CCSBTTT-SCCEETTCCHHHHHHHTCSCC-----CEEEETTTEEEEEEC
T ss_pred             EEeeccC-ceEECCCCCHHHHHHHHHHcCc--cEEEEEcCCCEEEEEEE
Confidence            3345566 9999999999999999999999  99999999999999944