Citrus Sinensis ID: 015182
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 411 | 2.2.26 [Sep-21-2011] | |||||||
| Q54SV3 | 649 | Probable allantoinase 1 O | yes | no | 0.944 | 0.597 | 0.417 | 6e-88 | |
| P32375 | 460 | Allantoinase OS=Saccharom | yes | no | 0.927 | 0.828 | 0.421 | 3e-84 | |
| Q82LL4 | 445 | Allantoinase OS=Streptomy | yes | no | 0.912 | 0.842 | 0.442 | 9e-84 | |
| Q9RKU5 | 445 | Allantoinase OS=Streptomy | yes | no | 0.912 | 0.842 | 0.441 | 2e-83 | |
| Q55C91 | 510 | Probable allantoinase 2 O | no | no | 0.944 | 0.760 | 0.421 | 1e-81 | |
| P40757 | 484 | Allantoinase, mitochondri | N/A | no | 0.768 | 0.652 | 0.454 | 7e-71 | |
| Q9RV76 | 448 | Allantoinase OS=Deinococc | yes | no | 0.924 | 0.848 | 0.380 | 2e-70 | |
| Q9KAH8 | 438 | Allantoinase OS=Bacillus | yes | no | 0.919 | 0.863 | 0.387 | 2e-69 | |
| A9MW45 | 453 | Allantoinase OS=Salmonell | yes | no | 0.902 | 0.818 | 0.374 | 2e-69 | |
| Q7CR08 | 453 | Allantoinase OS=Salmonell | yes | no | 0.902 | 0.818 | 0.374 | 3e-69 |
| >sp|Q54SV3|ALN1_DICDI Probable allantoinase 1 OS=Dictyostelium discoideum GN=allB1 PE=3 SV=1 | Back alignment and function desciption |
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Score = 324 bits (831), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 171/410 (41%), Positives = 257/410 (62%), Gaps = 22/410 (5%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
M GL+D H H+++PGRTEWEGF S T AAA+GG+TT+IDMPLNS P T + E L+ K+++
Sbjct: 59 MGGLVDSHVHINEPGRTEWEGFLSATSAAASGGVTTIIDMPLNSSPVTTTFENLQTKIES 118
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
++ VDVG GG++P N+ S + +L GV+G KSF+ SGI++FP I+E
Sbjct: 119 MPGKLRVDVGLLGGIIPGNSSEISRM--VLEGGVVGFKSFLVHSGIDEFPHVKEDDIQEA 176
Query: 121 LSVLARYKRP-------LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
++V+ + K ++ HAE+E+ E +L+ + D + Y T+LK+RP E A
Sbjct: 177 MNVMKKLKDEQGGRDVVMMFHAEIEEPIKEATERLQRENADPKLYDTFLKSRPRVSENIA 236
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTN-GDSITVETCPHYLAFS 231
I +++ + K HIVHLS +S +++ + EA N G IT ET HYL F
Sbjct: 237 IDKVIELTKKNMI-------KTHIVHLS-SSDAIEAIHEAVHNDGVPITAETTYHYLYFE 288
Query: 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 291
+E++P G+T +KC PP+R++ NK+ LW+A+ +G I+++ SDHSP +LKL+++G+F+KA
Sbjct: 289 SEQVPYGNTLYKCCPPVRESENKDLLWKAVTNGTINIIVSDHSPCTLDLKLIEQGDFMKA 348
Query: 292 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVW 350
WGGISSLQ LP+ W+ K GV L +L+ + S+ P++L G KG+I IG AD V+W
Sbjct: 349 WGGISSLQLGLPIIWTEASKRGVPLAKLSEYMSDAPSRLVGLNDRKGSIKIGRDADFVIW 408
Query: 351 EPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400
+PE F + D + M S Y G +L G V TI RGN ++ +G+
Sbjct: 409 DPEESFTV--DQGLLMVKNKNSPYHGEKLLGVVHHTILRGNKIFSKGDQT 456
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Dictyostelium discoideum (taxid: 44689) EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 5 |
| >sp|P32375|ALN_YEAST Allantoinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAL1 PE=3 SV=2 | Back alignment and function description |
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Score = 312 bits (799), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/399 (42%), Positives = 248/399 (62%), Gaps = 18/399 (4%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PGL+D H HL++PGRT WEGF +GT+AA +GG+TT++DMPLN+ P T + E ++K++A
Sbjct: 63 LPGLVDSHVHLNEPGRTSWEGFETGTQAAISGGVTTVVDMPLNAIPPTTNVENFRIKLEA 122
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AE +++ DVGFWGGLVP +N L L+ AGV G K F+ SG+ +FP +I+E
Sbjct: 123 AEGQMWCDVGFWGGLVP---HNLPDLIPLVKAGVRGFKGFLLDSGVEEFPPIGKEYIEEA 179
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L VLA ++ HAE+ K E + E R YS++L +RP S+E AI +L
Sbjct: 180 LKVLAEEDTMMMFHAELPKAHEDQQQPEQSH---REYSSFLSSRPDSFEIDAINLILECL 236
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ +GP +HIVHL+ + ++ L+ +A+ +G +T ETC HYL +AE+IPDG T
Sbjct: 237 R--ARNGPV--PPVHIVHLA-SMKAIPLIRKARASGLPVTTETCFHYLCIAAEQIPDGAT 291
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
FKC PPIR +N++ LW+AL +G I + SDHSP PELK L +G+F +WGGI+S+
Sbjct: 292 YFKCCPPIRSESNRQGLWDALREGVIGSVVSDHSPCTPELKNLQKGDFFDSWGGIASVGL 351
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELD 359
LP+ ++ G +L + +W + + G KG IA G ADLVV++ ++ ++
Sbjct: 352 GLPLMFT----QGCSLVDIVTWCCKNTSHQVGLSHQKGTIAPGYDADLVVFDTASKHKIS 407
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
N V+ K+ ++AY G + G VL TI RG +VY N
Sbjct: 408 NSS-VYFKN-KLTAYNGMTVKGTVLKTILRGQVVYTNAN 444
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Utilization of purines as secondary nitrogen sources, when primary sources are limiting. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q82LL4|ALLB_STRAW Allantoinase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=allB PE=3 SV=1 | Back alignment and function description |
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Score = 310 bits (795), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 176/398 (44%), Positives = 243/398 (61%), Gaps = 23/398 (5%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PGL+D H H++DPGRT WEGF + T+AAAAGGITTL+DMPLNS P T + L+ K D
Sbjct: 56 LPGLVDTHVHVNDPGRTHWEGFWTATRAAAAGGITTLVDMPLNSLPPTTTVGNLRTKRDV 115
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A + ++DVGFWGG +P+N + L L +AGV G K+F+ PSG+++FP + +
Sbjct: 116 AADKAHIDVGFWGGALPDNVKD---LRPLHDAGVFGFKAFLSPSGVDEFPELDQERLARS 172
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
++ +A + L+VHAE H+ R Y+ +L +RP E+ AI LL A
Sbjct: 173 MAEIAGFGGLLIVHAE----DPHHLAAAPQRGGPR-YTDFLASRPRDAEDTAIANLLAQA 227
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K A +H++HLS +S +L L+ AK G +TVETCPHYL +AEE+PDG +
Sbjct: 228 KRL-------NARVHVLHLS-SSDALPLIAGAKAEGVRVTVETCPHYLTLTAEEVPDGAS 279
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
FKC PPIR+AAN++ LW+AL DG ID + +DHSP+ +LK D F AWGGIS LQ
Sbjct: 280 EFKCCPPIREAANQDLLWQALADGTIDCVVTDHSPSTADLKTDD---FATAWGGISGLQL 336
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LP W+ R+ G +LE + W S R A+L G KGAI G AD V P+ F +D
Sbjct: 337 SLPAIWTEARRRGHSLEDVVRWMSARTARLVGLAQKGAIEAGRDADFAVLAPDETFTVD- 395
Query: 361 DHPVHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEG 397
P ++H + ++AY G+ LSG V +T RG + +G
Sbjct: 396 --PAALQHRNRVTAYAGKTLSGVVKSTWLRGERIMADG 431
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Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Streptomyces avermitilis (taxid: 33903) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q9RKU5|ALLB_STRCO Allantoinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=allB PE=3 SV=1 | Back alignment and function description |
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Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/399 (44%), Positives = 245/399 (61%), Gaps = 24/399 (6%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PGL+D H H++DPGRTEWEGF + T+AAAAGGITTL+DMPLNS P T + + L+ K +
Sbjct: 56 LPGLVDTHVHVNDPGRTEWEGFWTATRAAAAGGITTLVDMPLNSIPPTTTVDNLRTKREV 115
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A + ++DVGFWGG +P+N + L L AGV G K+F+ PSG+++FP + +
Sbjct: 116 AADKAHIDVGFWGGALPDNVKD---LRPLHEAGVFGFKAFLSPSGVDEFPHLDQEQLARS 172
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L+ +A + L+VHAE + H Y+ +L +RP E+ AI LL A
Sbjct: 173 LAEIAAFDGLLIVHAE-----DPHHLAAAPQQGGPKYTHFLASRPRDAEDTAIATLLAQA 227
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K A +H++HLS +S +L L+ EA+ +G +TVETCPHYL +AEE+PDG +
Sbjct: 228 KRF-------NARVHVLHLS-SSDALPLIAEARADGVRVTVETCPHYLTLTAEEVPDGAS 279
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
FKC PPIR+AAN++ LW+AL DG ID + +DHSP+ +LK D F AWGGI+ LQ
Sbjct: 280 EFKCCPPIREAANQDLLWQALADGTIDCVVTDHSPSTADLKTDD---FATAWGGIAGLQL 336
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELD 359
LP W+ R G+ LE + W SER A L G KGAIA G+ AD V P+ F +D
Sbjct: 337 SLPAMWTAARGRGLGLEDVVRWMSERTAALVGLDARKGAIAPGHDADFAVLAPDETFTVD 396
Query: 360 NDHPVHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEG 397
P ++H + ++AY G+ L G V +T RG + +G
Sbjct: 397 ---PAALQHRNRVTAYAGKTLYGVVKSTWLRGERIVADG 432
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Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q55C91|ALN2_DICDI Probable allantoinase 2 OS=Dictyostelium discoideum GN=allB2 PE=3 SV=1 | Back alignment and function description |
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Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 174/413 (42%), Positives = 255/413 (61%), Gaps = 25/413 (6%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
M GL+D H H+++PGRTEWEGF S T AAAAGG+TT++DMPLNS P T S + L K+++
Sbjct: 90 MGGLVDSHVHVNEPGRTEWEGFESATSAAAAGGVTTIVDMPLNSSPVTTSFKNLLDKIES 149
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+ ++ VDVG GG+VP N+ + +L GVLG KSF+ PSGI++FP N + I+E
Sbjct: 150 MKGKLRVDVGLLGGIVPGNSKEIKKM--VLQGGVLGFKSFLLPSGIDEFPPVNENDIQEA 207
Query: 121 LSVLARYKRP-------LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
++ + K ++ HAE+E+ E V+L+++ D + Y TYL +RP E A
Sbjct: 208 MNEMKLLKCQYNNSDVIMMFHAEVEEPIKEATVRLKNENADPKLYKTYLDSRPKISENQA 267
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
I +L+ + + + HIVHLS +S S++ + EA G I+ ET +YL ++
Sbjct: 268 ISKLIDITRQNQI------VSTHIVHLS-SSESIEQIREAMDQGVPISAETTYNYLHLTS 320
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE-----GN 287
E +P G+T FK APP+R+ NKE LW A+++G I ++ SDHSP LK L E G+
Sbjct: 321 ESVPYGNTLFKSAPPVREHENKELLWNAIINGTIKLIVSDHSPCTINLKQLKEDNQSIGD 380
Query: 288 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHAD 346
FLKAWGGISSL+ LP+ W+ + G+ + QL+ W S P+KL G KG+I IG AD
Sbjct: 381 FLKAWGGISSLELGLPIIWTECKNRGIPITQLSEWLSNGPSKLVGLNDRKGSIEIGRDAD 440
Query: 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399
V++ P F + N+ + +K+ SAY G +L G V TI RGN ++K+G++
Sbjct: 441 FVIFNPNESF-IVNEKKLFLKN-KFSAYNGEKLFGVVYETILRGNSIFKKGDN 491
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Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|P40757|ALN_LITCT Allantoinase, mitochondrial OS=Lithobates catesbeiana GN=ALN PE=1 SV=1 | Back alignment and function description |
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Score = 268 bits (684), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 151/332 (45%), Positives = 204/332 (61%), Gaps = 16/332 (4%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
M G+ID H H+++PGRT+WEG+ + T AAAAGGIT ++DMPLNS P T S K+ A
Sbjct: 69 MAGIIDPHVHVNEPGRTDWEGYRTATLAAAAGGITAIVDMPLNSLPPTTSVTNFHTKLQA 128
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+++ YVDV FWGG++P+N L +L AGV G K F+ SG+ +FP + + +
Sbjct: 129 AKRQCYVDVAFWGGVIPDNQVE---LIPMLQAGVAGFKCFLINSGVPEFPHVSVTDLHTA 185
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+S L LL HAE+E K + D+ Y T+L +RP E AA++ + +
Sbjct: 186 MSELQGTNSVLLFHAELEIA-----KPAPEIGDSTLYQTFLDSRPDDMEIAAVQLVADLC 240
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ + HIVHLS A S L ++ +AK G +TVET HYL+ S+E IP G T
Sbjct: 241 QQYK-------VRCHIVHLSSAQS-LTIIRKAKEAGAPLTVETTHHYLSLSSEHIPPGAT 292
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
FKC PP+R NKE LW AL+ GHIDM+ SDHSP P+LKLL EG+++KAWGGISSLQF
Sbjct: 293 YFKCCPPVRGHRNKEALWNALLQGHIDMVVSDHSPCTPDLKLLKEGDYMKAWGGISSLQF 352
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332
LP+ W+ R G +L ++ S AKL G
Sbjct: 353 GLPLFWTSARTRGFSLTDVSQLLSSNTAKLCG 384
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Lithobates catesbeiana (taxid: 8400) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q9RV76|ALLB_DEIRA Allantoinase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=allB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/399 (38%), Positives = 221/399 (55%), Gaps = 19/399 (4%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG++D H HL++PGRT WEGF +GT+A AAGG T+ +DMPLNS P ++ E + K
Sbjct: 53 FPGVLDDHVHLNEPGRTHWEGFETGTQALAAGGATSFLDMPLNSSPPVLTRERFEDKARL 112
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
E++ +D G WGGL P N L+ L GV+GLK+FM SG+++FP + + EG
Sbjct: 113 GEEKSLIDFGLWGGLTP---LNLDQLDDLAECGVIGLKAFMSHSGLDEFPAADDLTLYEG 169
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ R+ + HAE + + R + YL++RP E A++ L A
Sbjct: 170 MRTAKRHGLVVATHAESNEFTRRLTETA-RAQGKSGVRDYLESRPVVTELEAVQRALLFA 228
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+DT GA LH+VH+S + +++ L E K G +T+ETCPHYL F+ E++
Sbjct: 229 QDT-------GAALHLVHVS-SGAAVALAYEGKQKGIDVTIETCPHYLHFTGEDVERVGA 280
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
KCAPP+RD A +E+LW L+ GHID + SDHSP P++K + +F WGGIS Q
Sbjct: 281 ALKCAPPLRDPAVQEELWRELLAGHIDTVGSDHSPAPPDMKTSE--DFFSLWGGISGAQS 338
Query: 301 VLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
L V G + G+ LE +A+ + PA+ G KG +A+G AD + +F LD
Sbjct: 339 TLNVMLEDGYAQRGLPLEIIAALLALNPAQRFGLPQKGRLAVGADADFALVALGEKFTLD 398
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+ ++P Y G+ G+V AT RG VY+ G
Sbjct: 399 TLYDRWQQNP----YRGQSFQGRVHATYLRGQPVYQNGE 433
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Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q9KAH8|ALLB_BACHD Allantoinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=allB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 223/400 (55%), Gaps = 22/400 (5%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG++DVH H ++PGRTEWEGF SG+K+ AAGG+TT DMPLNS+P TI+ E L K
Sbjct: 56 FPGMVDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQL 115
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A ++ VD FWGGLVP N L+ L + GV+G K+FM G +DF ++ + +G
Sbjct: 116 ANEKSLVDYRFWGGLVPG---NIDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKG 172
Query: 121 LSVLARYKRPLLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178
+ +A L VHAE + + + +E+ L + YS + RP E A+ +L
Sbjct: 173 MKKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYS---EARPIVSELEAVERILR 229
Query: 179 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238
A+ T +HI H+S + L + +AK G +++VETCPHYL FS +E +
Sbjct: 230 FAQLT-------CCPIHICHVS-SRKVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAEI 281
Query: 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
KCAPP+R+ E LW+ LM G ID++SSDHSP++P++K + WGGI+
Sbjct: 282 GYLAKCAPPLRERQEVEDLWDGLMAGEIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGC 339
Query: 299 QFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 356
Q L V + G K + L Q+ S PAK G KG I +G A + + +
Sbjct: 340 QNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESY 399
Query: 357 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
L N ++ +HP IS Y+G+R GKV TI +G VY++
Sbjct: 400 TL-NASDLYYRHP-ISPYVGQRFRGKVKHTICQGKHVYQD 437
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Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|A9MW45|ALLB_SALPB Allantoinase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=allB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 222/403 (55%), Gaps = 32/403 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG++D H H+ +PGRT WEG+ +GT+AAA GGITT+I+MPLN P+T+ ET++LK DAA
Sbjct: 53 PGMVDAHTHISEPGRTHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRETIELKFDAA 112
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPMTNASHI 117
+ ++ +D GGLV +YN L L GV+G K F+ G NDF N
Sbjct: 113 KGKLTIDAAQLGGLV---SYNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQF 169
Query: 118 KEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+G L + +LVH E E G E K E + Y+ +RP E A
Sbjct: 170 YKGAQKLGEMDQTVLVHCENALICDELGEE--AKREGRV----TAHDYVASRPVFTEVEA 223
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
IR +L +AK A G LH+ H+S + ++ + A+ G +T E+CPHY
Sbjct: 224 IRRVLYLAK-------AAGCRLHVCHIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDT 275
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
++ + T KC+PPIRD N++ +WE L +G ID L SDHSP PE+K GN ++AW
Sbjct: 276 DQFEEIGTLAKCSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMQAW 332
Query: 293 GGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE 351
GGI+ LQ + V + +K G++L + A + G KG IA G ADLV +
Sbjct: 333 GGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLKHKGRIAPGKEADLVFIQ 392
Query: 352 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
P++ + L N+ + +H +S Y+GR + ++ TI RG+++Y
Sbjct: 393 PDSSYVLKNED-LEYRH-KVSPYVGRTIGARITKTILRGDVIY 433
|
Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) (taxid: 1016998) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
| >sp|Q7CR08|ALLB_SALTY Allantoinase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=allB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 222/403 (55%), Gaps = 32/403 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG++D H H+ +PGRT WEG+ +GT+AAA GGITT+I+MPLN P+T+ ET++LK DAA
Sbjct: 53 PGMVDAHTHISEPGRTHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRETIELKFDAA 112
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPMTNASHI 117
+ ++ +D GGLV +YN L L GV+G K F+ G NDF N
Sbjct: 113 KGKLTIDAAQLGGLV---SYNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQF 169
Query: 118 KEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+G L + +LVH E E G E K E + Y+ +RP E A
Sbjct: 170 YKGAQKLGEMDQTVLVHCENALICDELGEE--AKREGRV----TAHDYVASRPVFTEVEA 223
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
IR +L +AK A G LH+ H+S + ++ + A+ G +T E+CPHY
Sbjct: 224 IRRVLYLAK-------AAGCRLHVCHIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDT 275
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
++ + T KC+PPIRD N++ +WE L +G ID L SDHSP PE+K GN ++AW
Sbjct: 276 DQFEEIGTLAKCSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMQAW 332
Query: 293 GGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE 351
GGI+ LQ + V + +K G++L + A + G KG IA G ADLV +
Sbjct: 333 GGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLKHKGRIAPGKDADLVFIQ 392
Query: 352 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
P++ + L N+ + +H +S Y+GR + ++ TI RG+++Y
Sbjct: 393 PDSSYVLKNED-LEYRH-KVSPYVGRTIGARITKTILRGDVIY 433
|
Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 411 | ||||||
| 224079243 | 504 | predicted protein [Populus trichocarpa] | 0.995 | 0.811 | 0.824 | 0.0 | |
| 255556025 | 500 | allantoinase, putative [Ricinus communis | 0.992 | 0.816 | 0.807 | 0.0 | |
| 18412757 | 506 | allantoinase [Arabidopsis thaliana] gi|1 | 0.990 | 0.804 | 0.791 | 0.0 | |
| 297813881 | 505 | hypothetical protein ARALYDRAFT_490140 [ | 0.990 | 0.805 | 0.796 | 0.0 | |
| 21555036 | 506 | unknown [Arabidopsis thaliana] | 0.990 | 0.804 | 0.788 | 0.0 | |
| 39653353 | 512 | allantoinase [Robinia pseudoacacia] | 0.995 | 0.798 | 0.736 | 0.0 | |
| 356555194 | 513 | PREDICTED: probable allantoinase 1-like | 0.997 | 0.799 | 0.731 | 0.0 | |
| 356549345 | 512 | PREDICTED: probable allantoinase 1-like | 0.995 | 0.798 | 0.726 | 0.0 | |
| 356549347 | 513 | PREDICTED: probable allantoinase 1-like | 0.997 | 0.799 | 0.719 | 0.0 | |
| 357446483 | 652 | Allantoinase [Medicago truncatula] gi|35 | 0.992 | 0.625 | 0.731 | 0.0 |
| >gi|224079243|ref|XP_002305806.1| predicted protein [Populus trichocarpa] gi|222848770|gb|EEE86317.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/411 (82%), Positives = 377/411 (91%), Gaps = 2/411 (0%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVHAHL+DPGRTEWEGFPSGT+AAAAGGITTLIDMPLN+ P+T+S ETLKLK+DA
Sbjct: 96 MPGLIDVHAHLNDPGRTEWEGFPSGTRAAAAGGITTLIDMPLNNFPATVSAETLKLKIDA 155
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AEK IYVDVGFWGGLVPENA++A++LEALL+AG LGLKSFMCPSGINDFPMTN+SHIKEG
Sbjct: 156 AEKNIYVDVGFWGGLVPENAFDANSLEALLSAGALGLKSFMCPSGINDFPMTNSSHIKEG 215
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
LS+LA+Y+RPLLVHAE+ + SE H LED D RSYSTYLKTRPPSWEEAAIRELLTV+
Sbjct: 216 LSILAKYRRPLLVHAEIPQDSESH--LEDGENDPRSYSTYLKTRPPSWEEAAIRELLTVS 273
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
KDTR GPAEGAHLH+VHLSDA SSL LL EAK+NGDS+TVETCPHYLAFSAEEI DGDT
Sbjct: 274 KDTRIGGPAEGAHLHVVHLSDAGSSLQLLKEAKSNGDSVTVETCPHYLAFSAEEIKDGDT 333
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
FKCAPPIRDAANKE+LW AL++G IDMLSSDHSP+VP+LKL DEGNFLKAWGGISSLQF
Sbjct: 334 CFKCAPPIRDAANKERLWTALLEGDIDMLSSDHSPSVPDLKLFDEGNFLKAWGGISSLQF 393
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
VLPVTWS+GR+YGVTLEQLA WWSERPAKLAGQ KGAIA+GNHAD+ VWEP EFEL+N
Sbjct: 394 VLPVTWSHGRQYGVTLEQLALWWSERPAKLAGQDLKGAIAVGNHADITVWEPNVEFELNN 453
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT 411
D PV++KHPSISAY+G +LSGKV++T RGNLVYKEG HAPAACG+PILAT
Sbjct: 454 DLPVYLKHPSISAYMGSKLSGKVMSTFVRGNLVYKEGKHAPAACGAPILAT 504
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556025|ref|XP_002519047.1| allantoinase, putative [Ricinus communis] gi|223541710|gb|EEF43258.1| allantoinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/410 (80%), Positives = 369/410 (90%), Gaps = 2/410 (0%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPG IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPST+S ETL+LK++A
Sbjct: 92 MPGFIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTVSVETLRLKLEA 151
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AEK IYVDVGFWGGLVPENA+N S+LEALL+AGVLGLKSFMCPSGINDFPMT+A+HIKEG
Sbjct: 152 AEKNIYVDVGFWGGLVPENAFNGSSLEALLSAGVLGLKSFMCPSGINDFPMTDATHIKEG 211
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
LSVLA+Y+RPLLVHAE+++ SE ++ ED D R YSTYLKTRP SWEEAAIRELLTV+
Sbjct: 212 LSVLAKYRRPLLVHAEIQQDSESYI--EDGMDDPRHYSTYLKTRPASWEEAAIRELLTVS 269
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
KDTR GPAEG+HLHIVHLSD+ SSL LL +AK +GDS+TVETCPHYLAFSAEEI DGDT
Sbjct: 270 KDTRIGGPAEGSHLHIVHLSDSGSSLQLLKQAKRSGDSVTVETCPHYLAFSAEEIQDGDT 329
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
RFKCAPPIRDA NKE LW+AL+ G IDMLSSDHSPTVPELKLL+EGNFL+AWGGISSLQF
Sbjct: 330 RFKCAPPIRDATNKEALWKALLKGDIDMLSSDHSPTVPELKLLNEGNFLRAWGGISSLQF 389
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
V PVTW+YGRKYGVTLEQLA WWSERPAKLAGQ SKG I +G HAD+V+W+P AEF+L +
Sbjct: 390 VFPVTWTYGRKYGVTLEQLALWWSERPAKLAGQESKGGIVVGKHADIVIWDPNAEFDLSD 449
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 410
D P+++KH SISAY G +LSGKVLAT RGNLVY+EG HAP ACGSPILA
Sbjct: 450 DLPIYIKHSSISAYKGTKLSGKVLATFVRGNLVYREGKHAPTACGSPILA 499
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18412757|ref|NP_567276.1| allantoinase [Arabidopsis thaliana] gi|15028089|gb|AAK76575.1| unknown protein [Arabidopsis thaliana] gi|21281139|gb|AAM44996.1| unknown protein [Arabidopsis thaliana] gi|332657048|gb|AEE82448.1| allantoinase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/412 (79%), Positives = 368/412 (89%), Gaps = 5/412 (1%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HLDDPGR+EWEGFPSGTKAAAAGGITTL+DMPLNS PST+S ETLKLK++A
Sbjct: 98 MPGLIDVHVHLDDPGRSEWEGFPSGTKAAAAGGITTLVDMPLNSFPSTVSPETLKLKIEA 157
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ RI+VDVGFWGGLVP+NA N+SALE+LL+AGVLGLKSFMCPSGINDFPMTN +HIKEG
Sbjct: 158 AKNRIHVDVGFWGGLVPDNALNSSALESLLDAGVLGLKSFMCPSGINDFPMTNITHIKEG 217
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTL-DTRSYSTYLKTRPPSWEEAAIRELLTV 179
LSVLA+YKRPLLVHAE+E R +++ED + D RSY TYLKTRP SWEE AIR LL+V
Sbjct: 218 LSVLAKYKRPLLVHAEIE----RDLEIEDGSENDPRSYLTYLKTRPTSWEEGAIRNLLSV 273
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
++TR G AEGAHLHIVHLSDASSSLDL+ EAK GDS+TVETCPHYLAFSAEEIP+GD
Sbjct: 274 TENTRIGGSAEGAHLHIVHLSDASSSLDLIKEAKGKGDSVTVETCPHYLAFSAEEIPEGD 333
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
TRFKC+PPIRDAAN+EKLWEALM+G IDMLSSDHSPT PELKL+ +GNFLKAWGGISSLQ
Sbjct: 334 TRFKCSPPIRDAANREKLWEALMEGDIDMLSSDHSPTKPELKLMSDGNFLKAWGGISSLQ 393
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
FVLP+TWSYG+KYGVTLEQ+ SWWS+RP+KLAG SKGA+ +G HADLVVWEPEAEF++D
Sbjct: 394 FVLPITWSYGKKYGVTLEQVTSWWSDRPSKLAGLHSKGAVTVGKHADLVVWEPEAEFDVD 453
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT 411
DHP+H KHPSISAYLGRRLSGKV++T RGNLV+ EG HA ACGS LAT
Sbjct: 454 EDHPIHFKHPSISAYLGRRLSGKVVSTFVRGNLVFGEGKHASDACGSLQLAT 505
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297813881|ref|XP_002874824.1| hypothetical protein ARALYDRAFT_490140 [Arabidopsis lyrata subsp. lyrata] gi|297320661|gb|EFH51083.1| hypothetical protein ARALYDRAFT_490140 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/412 (79%), Positives = 365/412 (88%), Gaps = 5/412 (1%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HLDDPGR+EWEGF SGTKAAAAGGITTL+DMPLNS PST+S ETLKLK++A
Sbjct: 98 MPGLIDVHVHLDDPGRSEWEGFSSGTKAAAAGGITTLVDMPLNSYPSTVSPETLKLKIEA 157
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AE RI+VDVGFWGGLVP+NA NASALE+LL+AGVLGLKSFMCPSGINDFPMTN +HIKEG
Sbjct: 158 AENRIHVDVGFWGGLVPDNALNASALESLLDAGVLGLKSFMCPSGINDFPMTNITHIKEG 217
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLED-DTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
LSVLA+Y+RPLLVHAE+EK E +ED + D RSY TYLKTRP SWEE AIR LL+V
Sbjct: 218 LSVLAKYRRPLLVHAEVEKDLE----IEDGNDNDPRSYLTYLKTRPTSWEEGAIRNLLSV 273
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
++TR G AEGAH+HIVHLSDASSSLDL+ EAK GDS+TVETCPHYLAFSAEEIP GD
Sbjct: 274 TENTRIGGSAEGAHVHIVHLSDASSSLDLIKEAKGKGDSVTVETCPHYLAFSAEEIPKGD 333
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
TRFKC+PPIRDA N+EKLWEA+M+G IDMLSSDHSPT PELKLL +GNFLKAWGGISSLQ
Sbjct: 334 TRFKCSPPIRDATNREKLWEAMMEGDIDMLSSDHSPTKPELKLLSDGNFLKAWGGISSLQ 393
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
FVLP+TWSYG+KYGVTLEQ+ASWWS+RP+KLAG SKGAI +G HADLVVWEPEAEF+LD
Sbjct: 394 FVLPITWSYGKKYGVTLEQVASWWSDRPSKLAGLHSKGAITVGKHADLVVWEPEAEFDLD 453
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT 411
DHP+H KHPSISAYLGRRLSGKV++T RGNLV+ EG HA ACGS LAT
Sbjct: 454 EDHPIHFKHPSISAYLGRRLSGKVVSTFVRGNLVFGEGKHASDACGSLQLAT 505
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21555036|gb|AAM63760.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/412 (78%), Positives = 367/412 (89%), Gaps = 5/412 (1%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HLDDPGR+EWEGFPSGTKAAAAGGITTL+DMPLNS PST+S ETLKLK++A
Sbjct: 98 MPGLIDVHVHLDDPGRSEWEGFPSGTKAAAAGGITTLVDMPLNSFPSTVSPETLKLKIEA 157
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ RI+VDVGFWGGLVP+NA N+SALE+LL+AGVLGLKSFMCPSGINDFPMTN +HIKEG
Sbjct: 158 AKNRIHVDVGFWGGLVPDNALNSSALESLLDAGVLGLKSFMCPSGINDFPMTNITHIKEG 217
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTL-DTRSYSTYLKTRPPSWEEAAIRELLTV 179
LSVLA+YKRPLLVHAE+E R +++ED + D RSY TYLKTRP SWEE AIR LL+V
Sbjct: 218 LSVLAKYKRPLLVHAEIE----RDLEIEDGSENDPRSYLTYLKTRPTSWEEGAIRNLLSV 273
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
++TR G AEGAHLHIVHLSDASSSLDL+ EAK GDS+TVETCPHYLAFSAEEIP+GD
Sbjct: 274 TENTRIGGSAEGAHLHIVHLSDASSSLDLIKEAKGKGDSVTVETCPHYLAFSAEEIPEGD 333
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
TRFKC+PPIRDAAN+EKLWEALM+G IDMLSSDHSPT PELKL+ +GNFLKAWGGISSLQ
Sbjct: 334 TRFKCSPPIRDAANREKLWEALMEGDIDMLSSDHSPTKPELKLMSDGNFLKAWGGISSLQ 393
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
FVLP+TWSYG+KYGVTLEQ+ SWWS+RP+KLA SKGA+ +G HADLVVWEPEAEF++D
Sbjct: 394 FVLPITWSYGKKYGVTLEQVTSWWSDRPSKLARLHSKGAVTVGKHADLVVWEPEAEFDVD 453
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT 411
DHP+H KHPSISAYLGRRLSGKV++T RGNLV+ EG HA ACGS LAT
Sbjct: 454 EDHPIHFKHPSISAYLGRRLSGKVVSTFVRGNLVFGEGKHASDACGSLQLAT 505
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|39653353|gb|AAR29343.1| allantoinase [Robinia pseudoacacia] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/410 (73%), Positives = 367/410 (89%), Gaps = 1/410 (0%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HLD+PGRTEWEGF +GT+AAAAGG+TT++DMPLN+ P+T+S ETL+LK++A
Sbjct: 103 MPGLIDVHVHLDEPGRTEWEGFDTGTRAAAAGGVTTVVDMPLNNYPTTVSKETLQLKLEA 162
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AEK++YVDVGFWGGL+PENA N S LE LL+AGVLG+KSFMCPSGI+DFPMT HIKEG
Sbjct: 163 AEKKLYVDVGFWGGLIPENALNTSILEGLLSAGVLGVKSFMCPSGIDDFPMTTIDHIKEG 222
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
LSVLA+Y+RPLLVHAE+++ S+ H++L+ + D R+Y TYL TRPPSWE+AAI+EL+ V
Sbjct: 223 LSVLAKYRRPLLVHAEIQQDSKNHLELKGNG-DPRAYLTYLNTRPPSWEQAAIKELVDVT 281
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
KDT GP EGAH+HIVHLSD+S+SLDL+ EAK+ GDSI+VETCPHYLAFS+EEIPD DT
Sbjct: 282 KDTIIGGPLEGAHVHIVHLSDSSASLDLIKEAKSRGDSISVETCPHYLAFSSEEIPDRDT 341
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
RFKC+PPIRDA NKEKLWEA+++GHID+LSSDHSPTVPELKLL+EG+FL+AWGGISSLQF
Sbjct: 342 RFKCSPPIRDALNKEKLWEAVLEGHIDLLSSDHSPTVPELKLLEEGDFLRAWGGISSLQF 401
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LPVTWSYG+K+G+TLEQL+ WS++PA AG SKGAIA+GNHAD+VVW+PE EF+L++
Sbjct: 402 DLPVTWSYGKKHGLTLEQLSLLWSKKPATFAGLESKGAIAVGNHADIVVWQPELEFDLND 461
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 410
D+PV +KHPS+SAY+GRRLSGKVL T RGNLV+K+G HAPAACG PILA
Sbjct: 462 DYPVFIKHPSLSAYMGRRLSGKVLDTFVRGNLVFKDGKHAPAACGVPILA 511
|
Source: Robinia pseudoacacia Species: Robinia pseudoacacia Genus: Robinia Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555194|ref|XP_003545920.1| PREDICTED: probable allantoinase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/410 (73%), Positives = 360/410 (87%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HLD+PGRTEWEGF +GT+AAAAGG+TT++DMPLN+ P+T+S E LKLK+DA
Sbjct: 103 MPGLIDVHVHLDEPGRTEWEGFDTGTRAAAAGGVTTVVDMPLNNYPTTVSKEKLKLKLDA 162
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AE +IYVDVGFWGGL+PENA N S LE LL+AGVLG+KSFMCPSGINDFPMT HIK G
Sbjct: 163 AEDKIYVDVGFWGGLIPENALNTSILEGLLSAGVLGMKSFMCPSGINDFPMTTIDHIKAG 222
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L VLA+YKRP++VHAE+++ E H++L +D LD R+Y TYL RPPSWEEAAI++L+ V
Sbjct: 223 LPVLAKYKRPIVVHAEVQQDFENHLELNEDNLDPRAYLTYLNARPPSWEEAAIKQLVGVT 282
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
KDTR GP EGAH+HIVHLSD+S+SLDL+ EAK+ GDSI+VETCPHYLAFS+EEIP+GDT
Sbjct: 283 KDTRKGGPLEGAHVHIVHLSDSSASLDLIKEAKSRGDSISVETCPHYLAFSSEEIPNGDT 342
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
RFKC+PPIRDA N+EKLW A+++GHID+LSSDHSPTVPELKL++EG+FLKAWGGISSLQF
Sbjct: 343 RFKCSPPIRDAYNREKLWGAVLEGHIDLLSSDHSPTVPELKLMEEGDFLKAWGGISSLQF 402
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LPVTWSYG+KYG+TLEQL+ WS++PA LAG SKGAIA+GNHAD+VVW+PE EF+LD+
Sbjct: 403 NLPVTWSYGKKYGLTLEQLSLLWSKKPATLAGLESKGAIAVGNHADIVVWQPELEFDLDD 462
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 410
D+PV +KH +SAY+GRRLSGKVL T RGNLV+K+G HAPA CG ILA
Sbjct: 463 DYPVFIKHSELSAYMGRRLSGKVLETFVRGNLVFKDGKHAPAPCGVQILA 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549345|ref|XP_003543054.1| PREDICTED: probable allantoinase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/410 (72%), Positives = 365/410 (89%), Gaps = 1/410 (0%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HLD+PGRT WEGF +GT+AAAAGG+TT++DMPLN+ P+T+S ETLKLK++A
Sbjct: 103 MPGLIDVHVHLDEPGRTAWEGFDTGTRAAAAGGVTTVVDMPLNNHPTTVSRETLKLKLEA 162
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AE +IYVDVGFWGGL+PENA+N S LE LL+AGVLGLKSFMCPSGI+DFP+T HIKEG
Sbjct: 163 AENKIYVDVGFWGGLIPENAHNTSILEGLLSAGVLGLKSFMCPSGISDFPLTTIHHIKEG 222
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
LSVLA+Y+RPLLVH+E+++ S++H++L D R+Y TYL TRPPSWEEAAI+EL+ V
Sbjct: 223 LSVLAKYRRPLLVHSEIQQHSKKHLELNDKG-GPRAYLTYLHTRPPSWEEAAIKELVGVT 281
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
KDTR GP EGAH+H+VHLSD+S+SLDL+ EAK GDSI+VETCPHYLAFS+EEIP+GDT
Sbjct: 282 KDTRKGGPLEGAHVHVVHLSDSSASLDLIKEAKRRGDSISVETCPHYLAFSSEEIPNGDT 341
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
RFKC+PPIRDA N+EKLWEA+++GHID+LSSDHSPTVP+LKLL+EG+FLKAWGG++SLQF
Sbjct: 342 RFKCSPPIRDAYNREKLWEAVLEGHIDLLSSDHSPTVPQLKLLEEGDFLKAWGGVTSLQF 401
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LPVTWSYG+K+G+TLEQL+ WS++PA AG SKGAIA+GNHAD+VVW+PE EF+L+
Sbjct: 402 DLPVTWSYGKKHGLTLEQLSLLWSKKPATFAGLESKGAIAVGNHADIVVWKPEVEFDLNE 461
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 410
D+PV +KHPS+SAY+GRRLSGKVL T RGNLV+K+G HAP+ACG PILA
Sbjct: 462 DYPVFLKHPSLSAYMGRRLSGKVLETFVRGNLVFKKGKHAPSACGVPILA 511
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549347|ref|XP_003543055.1| PREDICTED: probable allantoinase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/410 (71%), Positives = 362/410 (88%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HL++PGRTEWEGF +GT+AAAAGG+TT++DMPLN P+T+S E LKLK+DA
Sbjct: 103 MPGLIDVHVHLNEPGRTEWEGFDTGTRAAAAGGVTTVVDMPLNCYPTTVSKEKLKLKLDA 162
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AE +IYVDVGFWGGL+PENA N S L+ LL+AGVLG+KSFMCPSGI+DFPM HIK G
Sbjct: 163 AEDKIYVDVGFWGGLIPENALNTSILDGLLSAGVLGVKSFMCPSGIDDFPMATIDHIKAG 222
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
LSVLA+Y+RP++VHAE+++ E H++L +D LD R+Y TYL TRPPSWEEAAI++L++V
Sbjct: 223 LSVLAKYRRPIVVHAEIQQDFENHLELNEDNLDPRAYLTYLNTRPPSWEEAAIKQLVSVT 282
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
KDTR GP EGAH+HIVHLSD+S+SLDL+ EAK++GDSI+VETCPHYLAF++EEIP+GDT
Sbjct: 283 KDTRKGGPLEGAHVHIVHLSDSSASLDLIKEAKSHGDSISVETCPHYLAFTSEEIPNGDT 342
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
RFKC+PPIRDA NK+KLWEA+++GHID+LS+DHSPTVPELKL++EG+FLKAWGGISSLQF
Sbjct: 343 RFKCSPPIRDAYNKDKLWEAVLEGHIDLLSTDHSPTVPELKLMEEGDFLKAWGGISSLQF 402
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LPVTWSYG+KYG+TLEQL+ WS++PA LAG SKG IA+GNHAD+VVW+PE EF+LD+
Sbjct: 403 NLPVTWSYGKKYGLTLEQLSLLWSKKPATLAGLESKGTIAVGNHADIVVWQPELEFDLDD 462
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 410
D+PV +KH +SAY+GRRLSGKVL T RGNLV+K+G HAPA CG ILA
Sbjct: 463 DYPVFIKHSELSAYMGRRLSGKVLETFVRGNLVFKDGKHAPAPCGVQILA 512
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357446483|ref|XP_003593519.1| Allantoinase [Medicago truncatula] gi|355482567|gb|AES63770.1| Allantoinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/409 (73%), Positives = 360/409 (88%), Gaps = 1/409 (0%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HLD+PGRT+WEGF +GT+AAAAGG+TT++DMPLN+ P+T+S ETL+LK++A
Sbjct: 227 MPGLIDVHVHLDEPGRTDWEGFVTGTQAAAAGGVTTVVDMPLNNHPTTMSKETLELKLEA 286
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AE +IYVDVGFWGGLVPENA N S LE LL+AGVLGLKSFMCPSGI+DFPMT HIKEG
Sbjct: 287 AEDKIYVDVGFWGGLVPENAQNTSILEGLLDAGVLGLKSFMCPSGIDDFPMTTIEHIKEG 346
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
LSVLA+Y+RPLLVH+E+++ SE +LE + D SY TYL TRPPSWEEAAI+EL+
Sbjct: 347 LSVLAKYRRPLLVHSEIQQDSESSSELEGNG-DPHSYKTYLDTRPPSWEEAAIKELVDAT 405
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
KDTR G EGAH+HIVHLSD+S+SLDL+ EAK GDSI++ETCPHYL FS+EEIPD DT
Sbjct: 406 KDTRIGGSLEGAHVHIVHLSDSSASLDLIKEAKRRGDSISIETCPHYLTFSSEEIPDKDT 465
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
R+KC+PPIRDA+N+EKLWEAL+DGHID+LSSDHSPTVP+LKLL EG+FLKAWGGISSLQF
Sbjct: 466 RYKCSPPIRDASNREKLWEALLDGHIDLLSSDHSPTVPKLKLLKEGDFLKAWGGISSLQF 525
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LPVTWSYG+K+G+TLE+L+ WS++PAKLAG SKGAIA+GNHAD+VVW+PE EF+L++
Sbjct: 526 DLPVTWSYGKKHGLTLEKLSLLWSQKPAKLAGLESKGAIAVGNHADIVVWQPEVEFDLND 585
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 409
D+PV +KHPS+SAY+G RL+GKVL T RGNLV+K+G HAPAACG PIL
Sbjct: 586 DYPVFIKHPSLSAYMGSRLAGKVLDTFVRGNLVFKDGKHAPAACGVPIL 634
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 411 | ||||||
| TAIR|locus:505006432 | 506 | ALN "allantoinase" [Arabidopsi | 0.990 | 0.804 | 0.737 | 1.1e-167 | |
| TIGR_CMR|CPS_4867 | 473 | CPS_4867 "putative allantoinas | 0.961 | 0.835 | 0.417 | 4.3e-86 | |
| DICTYBASE|DDB_G0282199 | 649 | allB1 "allantoinase" [Dictyost | 0.941 | 0.596 | 0.385 | 4.5e-75 | |
| DICTYBASE|DDB_G0270162 | 510 | allB2 "allantoinase" [Dictyost | 0.944 | 0.760 | 0.389 | 5.9e-73 | |
| CGD|CAL0005274 | 586 | DAL1 [Candida albicans (taxid: | 0.605 | 0.424 | 0.367 | 1.8e-72 | |
| UNIPROTKB|Q5A7L5 | 586 | DAL1 "Putative uncharacterized | 0.605 | 0.424 | 0.367 | 1.8e-72 | |
| SGD|S000001466 | 460 | DAL1 "Allantoinase" [Saccharom | 0.927 | 0.828 | 0.395 | 2e-72 | |
| ZFIN|ZDB-GENE-041212-22 | 459 | zgc:103559 "zgc:103559" [Danio | 0.951 | 0.851 | 0.390 | 2.6e-70 | |
| ASPGD|ASPL0000076835 | 506 | AN4603 [Emericella nidulans (t | 0.659 | 0.535 | 0.413 | 3.3e-67 | |
| FB|FBgn0030914 | 492 | CG6106 [Drosophila melanogaste | 0.924 | 0.772 | 0.399 | 2.2e-66 |
| TAIR|locus:505006432 ALN "allantoinase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1631 (579.2 bits), Expect = 1.1e-167, P = 1.1e-167
Identities = 304/412 (73%), Positives = 345/412 (83%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HLDDPGR+EWEGFPS L+DMPLNS PST+S ETLKLK++A
Sbjct: 98 MPGLIDVHVHLDDPGRSEWEGFPSGTKAAAAGGITTLVDMPLNSFPSTVSPETLKLKIEA 157
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ RI+VDVGFWGGLVP+NA N+SALE+LL+AGVLGLKSFMCPSGINDFPMTN +HIKEG
Sbjct: 158 AKNRIHVDVGFWGGLVPDNALNSSALESLLDAGVLGLKSFMCPSGINDFPMTNITHIKEG 217
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTL-DTRSYSTYLKTRPPSWEEAAIRELLTV 179
LSVLA+YKRPLLVHAE+E R +++ED + D RSY TYLKTRP SWEE AIR LL+V
Sbjct: 218 LSVLAKYKRPLLVHAEIE----RDLEIEDGSENDPRSYLTYLKTRPTSWEEGAIRNLLSV 273
Query: 180 AKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
++TR G AEGAHLHIVH EAK GDS+TVETCPHYLAFSAEEIP+GD
Sbjct: 274 TENTRIGGSAEGAHLHIVHLSDASSSLDLIKEAKGKGDSVTVETCPHYLAFSAEEIPEGD 333
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
TRFKC+PPIRDAAN+EKLWEALM+G IDMLSSDHSPT PELKL+ +GNFLKAWGGISSLQ
Sbjct: 334 TRFKCSPPIRDAANREKLWEALMEGDIDMLSSDHSPTKPELKLMSDGNFLKAWGGISSLQ 393
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
FVLP+TWSYG+KYGVTLEQ+ SWWS+RP+KLAG SKGA+ +G HADLVVWEPEAEF++D
Sbjct: 394 FVLPITWSYGKKYGVTLEQVTSWWSDRPSKLAGLHSKGAVTVGKHADLVVWEPEAEFDVD 453
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT 411
DHP+H KHPSISAYLGRRLSGKV++T RGNLV+ EG HA ACGS LAT
Sbjct: 454 EDHPIHFKHPSISAYLGRRLSGKVVSTFVRGNLVFGEGKHASDACGSLQLAT 505
|
|
| TIGR_CMR|CPS_4867 CPS_4867 "putative allantoinase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 171/410 (41%), Positives = 246/410 (60%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA 60
MPGL+D H H+++PGRTEWEGF + L+DMPLN P T + + K+ +
Sbjct: 74 MPGLVDSHVHINEPGRTEWEGFNTATQAAAAGGITTLVDMPLNCIPVTTTKAAFEEKLAS 133
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+++VD GFWGG++P+N L+ LL AGVLG+KSF+ SGI +FP A I+
Sbjct: 134 VHDKLWVDCGFWGGVIPDNI---DELDDLLTAGVLGVKSFLIDSGIEEFPNVAAKDIRAA 190
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ +LA++ P L+HAE++ GS VK+ D Y+++L++RP SWE AI ++ +A
Sbjct: 191 MPILAKHDVPYLIHAELDCGSFDDVKITD------KYNSFLESRPKSWENNAISLMVDMA 244
Query: 181 KDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
++++ G + +HIVH +AK G T ETCPHYL ++E IPDG T
Sbjct: 245 RESKAAG--DNCKIHIVHLSSDEALDTIA-KAKAEGLRFTAETCPHYLTIASENIPDGKT 301
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
FKC PPIR+ N+E+LW+A+ DG I + SDHSP P+LK +D G+ KAWGGIS+LQF
Sbjct: 302 LFKCCPPIRENKNREQLWQAVTDGRISFIVSDHSPCTPQLKHIDTGDIEKAWGGISALQF 361
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELD 359
LP+ W+ + TL LA S AK AG KG I++G+HADL+V++ A F +
Sbjct: 362 GLPLIWTEAKNRDFTLVDLARLMSHETAKFAGLDKIKGQISVGHHADLMVFDDTASFIIS 421
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 409
D H KH I+ Y+GR++ G+++ T RG VY + G P+L
Sbjct: 422 TDMIKH-KH-KITPYVGRKVDGQIMQTFVRGQQVYCNDQFISSPIGRPLL 469
|
|
| DICTYBASE|DDB_G0282199 allB1 "allantoinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 157/407 (38%), Positives = 240/407 (58%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA 60
M GL+D H H+++PGRTEWEGF S +IDMPLNS P T + E L+ K+++
Sbjct: 59 MGGLVDSHVHINEPGRTEWEGFLSATSAAASGGVTTIIDMPLNSSPVTTTFENLQTKIES 118
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
++ VDVG GG++P N+ S + +L GV+G KSF+ SGI++FP I+E
Sbjct: 119 MPGKLRVDVGLLGGIIPGNSSEISRM--VLEGGVVGFKSFLVHSGIDEFPHVKEDDIQEA 176
Query: 121 LSVLARYKRP-------LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
++V+ + K ++ HAE+E+ E +L+ + D + Y T+LK+RP E A
Sbjct: 177 MNVMKKLKDEQGGRDVVMMFHAEIEEPIKEATERLQRENADPKLYDTFLKSRPRVSENIA 236
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSA 232
I +++ + K HIVH +G IT ET HYL F +
Sbjct: 237 IDKVIELTKKNMIK-------THIVHLSSSDAIEAIHEAVHNDGVPITAETTYHYLYFES 289
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
E++P G+T +KC PP+R++ NK+ LW+A+ +G I+++ SDHSP +LKL+++G+F+KAW
Sbjct: 290 EQVPYGNTLYKCCPPVRESENKDLLWKAVTNGTINIIVSDHSPCTLDLKLIEQGDFMKAW 349
Query: 293 GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWE 351
GGISSLQ LP+ W+ K GV L +L+ + S+ P++L G KG+I IG AD V+W+
Sbjct: 350 GGISSLQLGLPIIWTEASKRGVPLAKLSEYMSDAPSRLVGLNDRKGSIKIGRDADFVIWD 409
Query: 352 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
PE F +D + +K+ + S Y G +L G V TI RGN ++ +G+
Sbjct: 410 PEESFTVDQGL-LMVKNKN-SPYHGEKLLGVVHHTILRGNKIFSKGD 454
|
|
| DICTYBASE|DDB_G0270162 allB2 "allantoinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 161/413 (38%), Positives = 238/413 (57%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA 60
M GL+D H H+++PGRTEWEGF S ++DMPLNS P T S + L K+++
Sbjct: 90 MGGLVDSHVHVNEPGRTEWEGFESATSAAAAGGVTTIVDMPLNSSPVTTSFKNLLDKIES 149
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+ ++ VDVG GG+VP N+ + +L GVLG KSF+ PSGI++FP N + I+E
Sbjct: 150 MKGKLRVDVGLLGGIVPGNSKEIKKM--VLQGGVLGFKSFLLPSGIDEFPPVNENDIQEA 207
Query: 121 LSVL----ARYKRP---LLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
++ + +Y ++ HAE+E+ E V+L+++ D + Y TYL +RP E A
Sbjct: 208 MNEMKLLKCQYNNSDVIMMFHAEVEEPIKEATVRLKNENADPKLYKTYLDSRPKISENQA 267
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSA 232
I +L+ + + + HIVH EA G I+ ET +YL ++
Sbjct: 268 ISKLIDITRQNQI------VSTHIVHLSSSESIEQIR-EAMDQGVPISAETTYNYLHLTS 320
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE-----GN 287
E +P G+T FK APP+R+ NKE LW A+++G I ++ SDHSP LK L E G+
Sbjct: 321 ESVPYGNTLFKSAPPVREHENKELLWNAIINGTIKLIVSDHSPCTINLKQLKEDNQSIGD 380
Query: 288 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHAD 346
FLKAWGGISSL+ LP+ W+ + G+ + QL+ W S P+KL G KG+I IG AD
Sbjct: 381 FLKAWGGISSLELGLPIIWTECKNRGIPITQLSEWLSNGPSKLVGLNDRKGSIEIGRDAD 440
Query: 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399
V++ P F + N+ + +K+ SAY G +L G V TI RGN ++K+G++
Sbjct: 441 FVIFNPNESF-IVNEKKLFLKN-KFSAYNGEKLFGVVYETILRGNSIFKKGDN 491
|
|
| CGD|CAL0005274 DAL1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 96/261 (36%), Positives = 144/261 (55%)
Query: 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXME 211
+D +Y+T+L +RP ++E AI E++ + T LHIVH
Sbjct: 330 IDPTAYATFLASRPDNFETTAIAEIINCSTLLPT------VPLHIVHLATHEAVPLLRA- 382
Query: 212 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271
AK G +T ETC HYL+ AE I T FKC PPIR N++ LW+AL + I + S
Sbjct: 383 AKAKGLPVTAETCFHYLSLCAERIGSCSTHFKCCPPIRTDDNRKLLWKALRNDVITTVVS 442
Query: 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASWWSERPAK 329
DHSP P+LK +++G+F +AWGGISS+ F LP+ ++ G K ++L ++ W S AK
Sbjct: 443 DHSPCTPDLKGMEKGDFFEAWGGISSVGFGLPILYTEGLKLDPPISLAEINKWCSWNTAK 502
Query: 330 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 388
G KG I +G ADL++++ +A++ ++N + K+ ++AY G G+VL T+
Sbjct: 503 QVGLSHCKGTIRVGYDADLLIFDTDAKYVVENKE-TYFKN-KLTAYDGMEFRGRVLETLV 560
Query: 389 RGNLVYKEGNHAPAACGSPIL 409
RGN V+ G G IL
Sbjct: 561 RGNTVFAMGRGFSGPKGKLIL 581
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| UNIPROTKB|Q5A7L5 DAL1 "Putative uncharacterized protein DAL1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 96/261 (36%), Positives = 144/261 (55%)
Query: 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXME 211
+D +Y+T+L +RP ++E AI E++ + T LHIVH
Sbjct: 330 IDPTAYATFLASRPDNFETTAIAEIINCSTLLPT------VPLHIVHLATHEAVPLLRA- 382
Query: 212 AKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271
AK G +T ETC HYL+ AE I T FKC PPIR N++ LW+AL + I + S
Sbjct: 383 AKAKGLPVTAETCFHYLSLCAERIGSCSTHFKCCPPIRTDDNRKLLWKALRNDVITTVVS 442
Query: 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG--VTLEQLASWWSERPAK 329
DHSP P+LK +++G+F +AWGGISS+ F LP+ ++ G K ++L ++ W S AK
Sbjct: 443 DHSPCTPDLKGMEKGDFFEAWGGISSVGFGLPILYTEGLKLDPPISLAEINKWCSWNTAK 502
Query: 330 LAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 388
G KG I +G ADL++++ +A++ ++N + K+ ++AY G G+VL T+
Sbjct: 503 QVGLSHCKGTIRVGYDADLLIFDTDAKYVVENKE-TYFKN-KLTAYDGMEFRGRVLETLV 560
Query: 389 RGNLVYKEGNHAPAACGSPIL 409
RGN V+ G G IL
Sbjct: 561 RGNTVFAMGRGFSGPKGKLIL 581
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| SGD|S000001466 DAL1 "Allantoinase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 158/399 (39%), Positives = 230/399 (57%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA 60
+PGL+D H HL++PGRT WEGF + ++DMPLN+ P T + E ++K++A
Sbjct: 63 LPGLVDSHVHLNEPGRTSWEGFETGTQAAISGGVTTVVDMPLNAIPPTTNVENFRIKLEA 122
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AE +++ DVGFWGGLVP +N L L+ AGV G K F+ SG+ +FP +I+E
Sbjct: 123 AEGQMWCDVGFWGGLVP---HNLPDLIPLVKAGVRGFKGFLLDSGVEEFPPIGKEYIEEA 179
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L VLA ++ HAE+ K E + E R YS++L +RP S+E AI +L
Sbjct: 180 LKVLAEEDTMMMFHAELPKAHEDQQQPEQSH---REYSSFLSSRPDSFEIDAINLILECL 236
Query: 181 KDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ +GP +HIVH +A+ +G +T ETC HYL +AE+IPDG T
Sbjct: 237 R--ARNGPVPP--VHIVHLASMKAIPLIR-KARASGLPVTTETCFHYLCIAAEQIPDGAT 291
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
FKC PPIR +N++ LW+AL +G I + SDHSP PELK L +G+F +WGGI+S+
Sbjct: 292 YFKCCPPIRSESNRQGLWDALREGVIGSVVSDHSPCTPELKNLQKGDFFDSWGGIASVGL 351
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELD 359
LP+ ++ G +L + +W + + G KG IA G ADLVV++ ++ ++
Sbjct: 352 GLPLMFTQG----CSLVDIVTWCCKNTSHQVGLSHQKGTIAPGYDADLVVFDTASKHKIS 407
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
N V+ K+ ++AY G + G VL TI RG +VY N
Sbjct: 408 NSS-VYFKN-KLTAYNGMTVKGTVLKTILRGQVVYTNAN 444
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| ZFIN|ZDB-GENE-041212-22 zgc:103559 "zgc:103559" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 160/410 (39%), Positives = 217/410 (52%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA 60
MPG++D H H+++PGRT+WEG+ + + DMPLN+ P T + K+ A
Sbjct: 59 MPGIVDSHVHVNEPGRTDWEGYWTATRAAAAGGITTIADMPLNTIPPTTTLRNFNEKLCA 118
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A + +VD FWGG++P N L+ + AGV G K F+ SG+ +FP + +
Sbjct: 119 ATGQCFVDTAFWGGVIPGNQME---LKPMCQAGVAGFKCFLIHSGVEEFPHVTDADLHAA 175
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ L LL HAE E H E D + YST+LK+RP E AI ++
Sbjct: 176 MKQLQGTNSVLLFHAEQELS---HPVAEKG--DPQEYSTFLKSRPDIMELEAIHTVIEFC 230
Query: 181 KDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ HIVH AK G +TVET HYL SAE+IP T
Sbjct: 231 LQYQV-------RCHIVHLSSAEPLELIRA-AKQAGAPLTVETTHHYLNLSAEDIPGRAT 282
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
+FKC PPIR AN+E LW AL G IDM+ SDHSP P+LK LD G+F +AWGGISSLQF
Sbjct: 283 QFKCCPPIRGTANQELLWSALKAGDIDMVVSDHSPCTPDLKCLDSGDFTQAWGGISSLQF 342
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELD 359
L + W+ K G + A E PA+L KG++ G+ ADLV+W+PE EF +
Sbjct: 343 GLSLFWTSASKRGFSFSDAARLLREEPARLCRLDNQKGSLIPGHDADLVIWDPEKEFTVK 402
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 409
D+ +H K+ ++ YL R L G V I RG +VY G+ + G +L
Sbjct: 403 EDN-IHHKN-KLTPYLDRVLRGMVRFPIVRGQVVYSHGSFSSQPLGKHLL 450
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| ASPGD|ASPL0000076835 AN4603 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 120/290 (41%), Positives = 170/290 (58%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA 60
+PGL+D H HL++PGRTEWEGF + +IDMPLN+ P T + E KLK+ A
Sbjct: 64 LPGLVDAHVHLNEPGRTEWEGFYTGTQAAAFGGVTTVIDMPLNAIPPTTTVENFKLKLKA 123
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AE + +VDVGF+GG++P NA L+AL+ GV G K F+ SG+++FP ++ +++
Sbjct: 124 AEGKCWVDVGFYGGIIPGNA---GELKALVREGVRGFKGFLIDSGVDEFPAVSSEDVRKA 180
Query: 121 LSVLARYKRPLLVHAEM---EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 177
++ LA L+ HAEM + SE + + + +YST+L +RP +E A+ E+L
Sbjct: 181 MAELADEPTTLMFHAEMVPPKTPSELPEVMPEGAPE--AYSTFLASRPSEYELCAVEEIL 238
Query: 178 TVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPD 237
+++ A LHIVH +A+ G IT ETC HYL+ +AEEI D
Sbjct: 239 SLSH------LAPKLPLHIVHLSAMEAIPLLR-KARAEGVPITAETCYHYLSLAAEEIRD 291
Query: 238 GDTRFKCAPPIRDAANKEKLWEAL----MDGHIDMLSSDHSPTVPELKLL 283
GDTR KC PPIR +N++ LW L DG I + SDHSP P+LKLL
Sbjct: 292 GDTRHKCCPPIRSKSNQDALWAELDRHAEDGVIKTIVSDHSPCTPDLKLL 341
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| FB|FBgn0030914 CG6106 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 165/413 (39%), Positives = 222/413 (53%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA 60
MPGLID + H+++PGR +WEGF + +ID P N+ P T+S LK K
Sbjct: 70 MPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTIIDRPTNAQPPTVSVAHLKAKTST 129
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMC-PSG--INDFPMTNASHI 117
A +IYVDVGFWGGLVP N L ALL AGV+GL+ +C P+ +FP N S +
Sbjct: 130 ARGKIYVDVGFWGGLVPGNG---DQLAALLGAGVMGLQCTLCDPAAPVSQEFPAVNESQL 186
Query: 118 KEGLSVL----ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173
+E LS L A + + VHAE+ +E H D R Y T+L TRPP E +A
Sbjct: 187 EEALSQLDKDQAEGEAIVAVHAELPLTTEIH----PDEEAPREYGTFLVTRPPQMEISAT 242
Query: 174 RELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAE 233
+ L +A P +HI++ E + G ++TV+TCPHYLA +AE
Sbjct: 243 QLLCRLANRH----PRRC--IHILNCSSGESLPLVE-ECRRQGGNLTVDTCPHYLALAAE 295
Query: 234 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLD----EGNF 288
++PD T FK PPIR+ N+E+LW+AL G I M+ SDHSP P + L GNF
Sbjct: 296 DVPDCGTEFKTWPPIRERRNQEQLWQALRPGGAIRMIGSDHSPATPGARALTCGRGRGNF 355
Query: 289 LKAWGGISSLQFVLPVTWSYG-RKYG---VTLEQLASWWSERPAKLAG-QVSKGAIAIGN 343
LKAW GI+SLQ L V W+ + G +T+ + + PA L G SKG IA G
Sbjct: 356 LKAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPANLCGLSASKGRIAEGY 415
Query: 344 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
AD VW PE EF + + + + Y G++L G V AT+ RG VY++
Sbjct: 416 DADFCVWSPEEEFTVGPE--LLYTATKATPYAGQKLRGVVHATVVRGLHVYQQ 466
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B1XGB0 | ALLB_ECODH | 3, ., 5, ., 2, ., 5 | 0.3665 | 0.9245 | 0.8388 | yes | no |
| O32137 | ALLB_BACSU | 3, ., 5, ., 2, ., 5 | 0.3575 | 0.9221 | 0.8497 | yes | no |
| Q82LL4 | ALLB_STRAW | 3, ., 5, ., 2, ., 5 | 0.4422 | 0.9124 | 0.8426 | yes | no |
| A1A8H7 | ALLB_ECOK1 | 3, ., 5, ., 2, ., 5 | 0.3605 | 0.9148 | 0.8300 | yes | no |
| Q02C42 | ALLB_SOLUE | 3, ., 5, ., 2, ., 5 | 0.3661 | 0.9221 | 0.8293 | yes | no |
| Q9RV76 | ALLB_DEIRA | 3, ., 5, ., 2, ., 5 | 0.3809 | 0.9245 | 0.8482 | yes | no |
| B6I0G2 | ALLB_ECOSE | 3, ., 5, ., 2, ., 5 | 0.3581 | 0.9148 | 0.8300 | yes | no |
| B1IZ89 | ALLB_ECOLC | 3, ., 5, ., 2, ., 5 | 0.3629 | 0.9148 | 0.8300 | yes | no |
| B5EYC3 | ALLB_SALA4 | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| Q24PT9 | ALLB_DESHY | 3, ., 5, ., 2, ., 5 | 0.3647 | 0.9124 | 0.8351 | yes | no |
| Q82ZQ1 | ALLB_ENTFA | 3, ., 5, ., 2, ., 5 | 0.3523 | 0.9245 | 0.8370 | yes | no |
| P32375 | ALN_YEAST | 3, ., 5, ., 2, ., 5 | 0.4210 | 0.9270 | 0.8282 | yes | no |
| B7MQM2 | ALLB_ECO81 | 3, ., 5, ., 2, ., 5 | 0.3605 | 0.9148 | 0.8300 | yes | no |
| Q9KAH8 | ALLB_BACHD | 3, ., 5, ., 2, ., 5 | 0.3875 | 0.9197 | 0.8630 | yes | no |
| Q5PCG0 | ALLB_SALPA | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| A7ZIR8 | ALLB_ECO24 | 3, ., 5, ., 2, ., 5 | 0.3581 | 0.9148 | 0.8300 | yes | no |
| Q57S43 | ALLB_SALCH | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| B5FLN3 | ALLB_SALDC | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| Q1J391 | ALLB_DEIGD | 3, ., 5, ., 2, ., 5 | 0.3694 | 0.9294 | 0.8507 | yes | no |
| B7N966 | ALLB_ECOLU | 3, ., 5, ., 2, ., 5 | 0.3653 | 0.9148 | 0.8300 | yes | no |
| Q0TKD0 | ALLB_ECOL5 | 3, ., 5, ., 2, ., 5 | 0.3605 | 0.9148 | 0.8300 | yes | no |
| B7M4L5 | ALLB_ECO8A | 3, ., 5, ., 2, ., 5 | 0.3581 | 0.9148 | 0.8300 | yes | no |
| B1LKD0 | ALLB_ECOSM | 3, ., 5, ., 2, ., 5 | 0.3665 | 0.9245 | 0.8388 | yes | no |
| Q5WBJ6 | ALLB_BACSK | 3, ., 5, ., 2, ., 5 | 0.3740 | 0.9148 | 0.8392 | yes | no |
| Q65LN0 | ALLB_BACLD | 3, ., 5, ., 2, ., 5 | 0.3591 | 0.9197 | 0.8325 | yes | no |
| B7L7D8 | ALLB_ECO55 | 3, ., 5, ., 2, ., 5 | 0.3581 | 0.9148 | 0.8300 | yes | no |
| A7ZXG5 | ALLB_ECOHS | 3, ., 5, ., 2, ., 5 | 0.3605 | 0.9148 | 0.8300 | yes | no |
| Q8FK60 | ALLB_ECOL6 | 3, ., 5, ., 2, ., 5 | 0.3605 | 0.9148 | 0.8300 | yes | no |
| C4ZUW1 | ALLB_ECOBW | 3, ., 5, ., 2, ., 5 | 0.3665 | 0.9245 | 0.8388 | yes | no |
| Q1AS71 | ALLB_RUBXD | 3, ., 5, ., 2, ., 5 | 0.3859 | 0.9294 | 0.8414 | yes | no |
| Q7CR08 | ALLB_SALTY | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| B8G120 | ALLB_DESHD | 3, ., 5, ., 2, ., 5 | 0.3582 | 0.9148 | 0.8374 | yes | no |
| A7Z8F5 | ALLB_BACA2 | 3, ., 5, ., 2, ., 5 | 0.3681 | 0.9221 | 0.8348 | yes | no |
| B5BD11 | ALLB_SALPK | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| B4T9L5 | ALLB_SALHS | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| Q1RF23 | ALLB_ECOUT | 3, ., 5, ., 2, ., 5 | 0.3605 | 0.9148 | 0.8300 | yes | no |
| B5R646 | ALLB_SALG2 | 3, ., 5, ., 2, ., 5 | 0.3722 | 0.9026 | 0.8189 | yes | no |
| B0K2E8 | PYRC_THEPX | 3, ., 5, ., 2, ., 3 | 0.3075 | 0.8929 | 0.8515 | yes | no |
| B4SXM8 | ALLB_SALNS | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| B5QUT6 | ALLB_SALEP | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| B0KA35 | PYRC_THEP3 | 3, ., 5, ., 2, ., 3 | 0.3075 | 0.8929 | 0.8515 | yes | no |
| A9MW45 | ALLB_SALPB | 3, ., 5, ., 2, ., 5 | 0.3746 | 0.9026 | 0.8189 | yes | no |
| B7ME34 | ALLB_ECO45 | 3, ., 5, ., 2, ., 5 | 0.3605 | 0.9148 | 0.8300 | yes | no |
| B7UKI9 | ALLB_ECO27 | 3, ., 5, ., 2, ., 5 | 0.3605 | 0.9148 | 0.8300 | yes | no |
| Q9RKU5 | ALLB_STRCO | 3, ., 5, ., 2, ., 5 | 0.4411 | 0.9124 | 0.8426 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.2.5 | 0.824 |
| 3rd Layer | 3.5.2 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00013082001 | SubName- Full=Chromosome chr10 scaffold_433, whole genome shotgun sequence; (505 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00030118001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (482 aa) | • | • | • | 0.989 | |||||
 | GSVIVG00025187001 | RecName- Full=Transthyretin; (334 aa) | • | • | 0.949 | ||||||
 | GSVIVG00027272001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (403 aa) | • | • | • | • | 0.945 | ||||
 | GSVIVG00020145001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (383 aa) | • | • | • | 0.914 | |||||
 | GSVIVG00034896001 | SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (407 aa) | • | • | • | 0.846 | |||||
 | GSVIVG00013798001 | RecName- Full=Uricase; EC=1.7.3.3;; Catalyzes the oxidation of uric acid to 5- hydroxyisourate, [...] (295 aa) | • | • | • | 0.840 | |||||
 | GSVIVG00024476001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (749 aa) | • | • | • | 0.795 | |||||
 | GSVIVG00017885001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (421 aa) | • | • | • | 0.742 | |||||
 | GSVIVG00010725001 | SubName- Full=Chromosome undetermined scaffold_279, whole genome shotgun sequence; (283 aa) | • | • | 0.728 | ||||||
 | GSVIVG00000579001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (541 aa) | • | • | • | 0.723 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 411 | |||
| PLN02795 | 505 | PLN02795, PLN02795, allantoinase | 0.0 | |
| cd01315 | 447 | cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and A | 0.0 | |
| TIGR03178 | 443 | TIGR03178, allantoinase, allantoinase | 1e-149 | |
| PRK06189 | 451 | PRK06189, PRK06189, allantoinase; Provisional | 1e-116 | |
| COG0044 | 430 | COG0044, PyrC, Dihydroorotase and related cyclic a | 1e-107 | |
| PRK08044 | 449 | PRK08044, PRK08044, allantoinase; Provisional | 4e-96 | |
| cd01318 | 361 | cd01318, DHOase_IIb, Dihydroorotase (DHOase), subg | 2e-70 | |
| cd01302 | 337 | cd01302, Cyclic_amidohydrolases, Cyclic amidohydro | 1e-66 | |
| TIGR00857 | 411 | TIGR00857, pyrC_multi, dihydroorotase, multifuncti | 3e-64 | |
| PRK09357 | 423 | PRK09357, pyrC, dihydroorotase; Validated | 7e-64 | |
| cd01317 | 374 | cd01317, DHOase_IIa, Dihydroorotase (DHOase), subg | 2e-63 | |
| cd01314 | 447 | cd01314, D-HYD, D-hydantoinases (D-HYD) also calle | 2e-62 | |
| PRK08323 | 459 | PRK08323, PRK08323, phenylhydantoinase; Validated | 4e-53 | |
| PRK02382 | 443 | PRK02382, PRK02382, dihydroorotase; Provisional | 3e-52 | |
| PRK09060 | 444 | PRK09060, PRK09060, dihydroorotase; Validated | 6e-52 | |
| TIGR02033 | 454 | TIGR02033, D-hydantoinase, D-hydantoinase | 1e-50 | |
| PRK09236 | 444 | PRK09236, PRK09236, dihydroorotase; Reviewed | 3e-44 | |
| PRK07575 | 438 | PRK07575, PRK07575, dihydroorotase; Provisional | 9e-44 | |
| PRK13404 | 477 | PRK13404, PRK13404, dihydropyrimidinase; Provision | 9e-42 | |
| PRK04250 | 398 | PRK04250, PRK04250, dihydroorotase; Provisional | 5e-38 | |
| PRK01211 | 409 | PRK01211, PRK01211, dihydroorotase; Provisional | 3e-34 | |
| PRK00369 | 392 | PRK00369, pyrC, dihydroorotase; Provisional | 7e-30 | |
| PRK07627 | 425 | PRK07627, PRK07627, dihydroorotase; Provisional | 4e-25 | |
| PLN02942 | 486 | PLN02942, PLN02942, dihydropyrimidinase | 1e-24 | |
| PRK08417 | 386 | PRK08417, PRK08417, dihydroorotase; Provisional | 6e-24 | |
| PRK07369 | 418 | PRK07369, PRK07369, dihydroorotase; Provisional | 5e-22 | |
| cd01316 | 344 | cd01316, CAD_DHOase, The eukaryotic CAD protein is | 1e-21 | |
| PRK09059 | 429 | PRK09059, PRK09059, dihydroorotase; Validated | 4e-13 | |
| cd01292 | 275 | cd01292, metallo-dependent_hydrolases, Superfamily | 2e-09 | |
| pfam01979 | 307 | pfam01979, Amidohydro_1, Amidohydrolase family | 2e-09 | |
| pfam13594 | 66 | pfam13594, Amidohydro_5, Amidohydrolase | 2e-07 | |
| PRK09059 | 429 | PRK09059, PRK09059, dihydroorotase; Validated | 4e-07 | |
| pfam13147 | 304 | pfam13147, Amidohydro_4, Amidohydrolase | 6e-06 | |
| PRK13308 | 569 | PRK13308, ureC, urease subunit alpha; Reviewed | 6e-05 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 8e-05 | |
| cd01306 | 325 | cd01306, PhnM, PhnM is believed to be a subunit of | 8e-04 | |
| cd01309 | 359 | cd01309, Met_dep_hydrolase_C, Metallo-dependent hy | 0.002 |
| >gnl|CDD|178392 PLN02795, PLN02795, allantoinase | Back alignment and domain information |
|---|
Score = 748 bits (1933), Expect = 0.0
Identities = 308/411 (74%), Positives = 351/411 (85%), Gaps = 3/411 (0%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLIDVH HL++PGRTEWEGFP+GTKAAAAGGITTL+DMPLNS PST S ETL+LK++A
Sbjct: 98 MPGLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEA 157
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ ++YVDVGFWGGLVPENA+NAS LE LL+AG LGLKSFMCPSGINDFPMT A+HIK
Sbjct: 158 AKGKLYVDVGFWGGLVPENAHNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAA 217
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L VLA+Y RPLLVHAE+ E +L+ D RSYSTYLK+RPPSWE+ AIR+LL VA
Sbjct: 218 LPVLAKYGRPLLVHAEVVSPVESDSRLDADP---RSYSTYLKSRPPSWEQEAIRQLLEVA 274
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
KDTR G AEGAH+HIVHLSDA SSL+L+ EAK GDS+TVETCPHYLAFSAEEIPDGDT
Sbjct: 275 KDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDT 334
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
R+KCAPPIRDAAN+E LW+AL+DG IDMLSSDHSP+ P+LKLL+EGNFL+AWGGISSLQF
Sbjct: 335 RYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQF 394
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
VLP TW+ GR YG+TLEQLA WWSERPAKLAG SKGAIA G AD+VVW+PEAEF LD
Sbjct: 395 VLPATWTAGRAYGLTLEQLARWWSERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDE 454
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILAT 411
+P++ KH S+S YLG +LSGKV+AT RGNLV+ EG HA ACGSPILA
Sbjct: 455 SYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFLEGKHAKQACGSPILAK 505
|
Length = 505 |
| >gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Score = 564 bits (1455), Expect = 0.0
Identities = 209/411 (50%), Positives = 268/411 (65%), Gaps = 16/411 (3%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
MPGLID H H+++PGRTEWEGF +GTKAAAAGGITT+IDMPLNS P T + E L+ K++A
Sbjct: 51 MPGLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEA 110
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ +++VDVGFWGGLVP N L L AGV+G K F+CPSG+++FP + ++E
Sbjct: 111 AQGKLHVDVGFWGGLVP---GNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEA 167
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ LA+ L VHAE + +E + R Y YL +RP E AI+ +L +A
Sbjct: 168 MKELAKTGSVLAVHAENPEITEALQEQAKAK-GKRDYRDYLASRPVFTEVEAIQRILLLA 226
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K+T G LHIVHLS A + + L+ EA+ G +TVETCPHYL F+AE++PDG T
Sbjct: 227 KET-------GCRLHIVHLSSAEA-VPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGT 278
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
FKCAPPIRDAAN+E+LWEAL +G IDM+ SDHSP PELKLL +G+F KAWGGIS LQ
Sbjct: 279 EFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQL 338
Query: 301 VLPVTWSYGRKYGV-TLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFEL 358
LPV + +LE +A E PAKL G KG IA+G AD VVW+PE EF +
Sbjct: 339 GLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTV 398
Query: 359 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 409
D + + IS Y+GR L G+V ATI RG +VY++G G +L
Sbjct: 399 DAEDLYY--KNKISPYVGRTLKGRVHATILRGTVVYQDGEVVGEPLGQLLL 447
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. Length = 447 |
| >gnl|CDD|163175 TIGR03178, allantoinase, allantoinase | Back alignment and domain information |
|---|
Score = 429 bits (1106), Expect = e-149
Identities = 188/410 (45%), Positives = 252/410 (61%), Gaps = 17/410 (4%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG++D H H+++PGRTEWEGF +GT+AAAAGGITT IDMPLNS P+T + +L+ K +A
Sbjct: 50 FPGVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEA 109
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ ++ VDVGFWGGLVP YN L L AGV+G K+F+ PSG ++FP + + +G
Sbjct: 110 AKGKLAVDVGFWGGLVP---YNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKG 166
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ LAR + LLVHAE + + E YL +RP E AIR L +A
Sbjct: 167 MRELARLGQLLLVHAENPAITSA-LGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALA 225
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K T G +H+VHLS ++ +++L+ EAK G +TVETCPHYL +AEE+PDG T
Sbjct: 226 KVT-------GCRVHVVHLS-SAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGT 277
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
KCAPPIRD AN+E LWEAL++G ID + SDHSP P+LK G+F KAWGGI+ LQ
Sbjct: 278 LAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDLK--RAGDFFKAWGGIAGLQS 335
Query: 301 VLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
L V + +K G+ LE +A + PAK G KG IA G AD V +P+ + L
Sbjct: 336 TLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLT 395
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 409
D + +H +S Y+GR + G+V AT RG +Y + A G +L
Sbjct: 396 PDDLYY-RHK-VSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAPKGQLLL 443
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443 |
| >gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 346 bits (890), Expect = e-116
Identities = 160/400 (40%), Positives = 224/400 (56%), Gaps = 23/400 (5%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG+IDVH H ++PGRT WEGF +G+ A AAGG TT DMPLNS P T++ E L K + A
Sbjct: 54 PGMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELA 113
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 121
++ VD WGGLVP N L L AGV+G K+FM SG ++F ++ + EG+
Sbjct: 114 RQKSAVDFALWGGLVPG---NLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGM 170
Query: 122 SVLARYKRPLLVHAE---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178
+A + L +HAE + + + + T D R YL++RP E A++ L
Sbjct: 171 KEIAALGKILALHAESDALTRHLTTQARQQGKT-DVRD---YLESRPVVAELEAVQRALL 226
Query: 179 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238
A++T G LH VH+S ++ L+ EAK G ++VETCPHYL F+ E+
Sbjct: 227 YAQET-------GCPLHFVHISSG-KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERI 278
Query: 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
KCAPP+R + KE+LW L+ G IDM+SSDHSP PELK + +F WGGIS
Sbjct: 279 GAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELK--EGDDFFLVWGGISGG 336
Query: 299 QFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 357
Q L V + G + G+ LE +A + PAK G KG + +G AD V+ + + +
Sbjct: 337 QSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGLPQKGRLEVGADADFVLVDLDETYT 396
Query: 358 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
L + + +H S Y GR G+V+AT RG VY++G
Sbjct: 397 LTKED-LFYRHK-QSPYEGRTFPGRVVATYLRGQCVYQDG 434
|
Length = 451 |
| >gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 322 bits (828), Expect = e-107
Identities = 144/398 (36%), Positives = 209/398 (52%), Gaps = 25/398 (6%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PGL+D+H H +PG E F +G++AAAAGG+TT++DMP P + E L+ K++
Sbjct: 52 LPGLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPID-TAEALEDKLER 110
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ + VD F+GGL N LE G K FM S + ++E
Sbjct: 111 AKGKSVVDYAFYGGLTK---GNLGKLELTERGVEAGFKGFMDDST----GALDDDVLEEA 163
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L A +LVHAE + V E R+ L RPP E +AI L +A
Sbjct: 164 LEYAAELGALILVHAEDDDLIAEGVMNEG----LRAPELGLAGRPPIAEASAIARDLELA 219
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ T GA +HI H+S S ++L+ AK G +T E PH+L E+I D T
Sbjct: 220 RAT-------GARVHICHISTKES-VELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGT 271
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
K PP+RD ++E LWEAL DG ID+++SDH+P E K L F +A GI L+
Sbjct: 272 LAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKRLP---FEEAPSGIPGLET 328
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LP+ + +K ++LE+L S PA++ G KGAI G ADLV+ +P+ E+ +
Sbjct: 329 ALPLLLTLVKKGRLSLERLVELLSTNPARIFGLPPKGAIEEGADADLVLVDPDEEWTIRA 388
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
++ K + S + G L G+V+ATI RG +VY++G
Sbjct: 389 -EELYSKAKN-SPFEGFELKGRVVATILRGKVVYEDGE 424
|
Length = 430 |
| >gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 294 bits (755), Expect = 4e-96
Identities = 147/403 (36%), Positives = 218/403 (54%), Gaps = 32/403 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG++D H H+ +PGR+ WEG+ +GT+AAA GGITT+I+MPLN P+T+ +++LK DAA
Sbjct: 53 PGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAA 112
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHI 117
+ ++ +D GGLV YN L L GV+G K F+ G NDF N
Sbjct: 113 KGKLTIDAAQLGGLVS---YNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQF 169
Query: 118 KEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+G L +P+LVH E E G E K E + Y+ +RP E A
Sbjct: 170 YKGAQKLGELGQPVLVHCENALICDELGEE--AKREGRV----TAHDYVASRPVFTEVEA 223
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
IR +L +AK G LH+ H+S + ++ + A+ G +T E+CPHY
Sbjct: 224 IRRVLYLAKVA-------GCRLHVCHIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDT 275
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
++ + T KC+PPIRD N++ +WE L +G ID L SDHSP PE+K GN ++AW
Sbjct: 276 DQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMEAW 332
Query: 293 GGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE 351
GGI+ LQ + V + +K G++L + A + G KG IA G AD V +
Sbjct: 333 GGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQ 392
Query: 352 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
P + + L N+ + +H +S Y+GR + ++ TI RG+++Y
Sbjct: 393 PNSSYVLKNED-LEYRH-KVSPYVGRTIGARITKTILRGDVIY 433
|
Length = 449 |
| >gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 2e-70
Identities = 117/390 (30%), Positives = 174/390 (44%), Gaps = 35/390 (8%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG+ID+H H +PG T E F SG++AAAAGG+TT++DMP N+ P T + E L K+ A
Sbjct: 6 PGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKLRLA 64
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 121
+ VD G + G+ + L+ AG K FM S + +E L
Sbjct: 65 AAKSVVDYGLYFGVTGSE--DLEELDKAPPAGY---KIFMGDSTGDLL------DDEETL 113
Query: 122 -SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ A + HAE E + K R A L +A
Sbjct: 114 ERIFAEGSVLVTFHAEDEDRLRENRKELKGESAHPRI------RDAEAAAVATARALKLA 167
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ GA LHI H+S + L K +TVE PH+L E+ T
Sbjct: 168 RRH-------GARLHICHVSTP----EELKLIKKAKPGVTVEVTPHHLFLDVEDYDRLGT 216
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
K PP+R +++ L +AL DG ID+++SDH+P E K + A GI ++
Sbjct: 217 LGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEK---RKGYPAAPSGIPGVET 273
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
LP+ + K ++L ++ S PA++ G +KG IA G ADL V + + E +
Sbjct: 274 ALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERTI-R 332
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRG 390
H K + + G ++G + TI RG
Sbjct: 333 AEEFHSKAG-WTPFEGFEVTGFPVMTIVRG 361
|
This group contains the archeal members of the DHOase family. Length = 361 |
| >gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 1e-66
Identities = 121/387 (31%), Positives = 189/387 (48%), Gaps = 54/387 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 59
+PG ID+H HL DPG T ++ F SG++AAAAGG+TT+IDMP N+ P I ++LK+
Sbjct: 4 LPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELKIK 62
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
AE+ YVD F G+ P + + L+ L +AG+ LK FM F + + + +
Sbjct: 63 LAEESSYVDFSFHAGIGPGDVTDE--LKKLFDAGINSLKVFMNYYFGELFDVDDGT-LMR 119
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
+A P++VHAE +
Sbjct: 120 TFLEIASRGGPVMVHAER--------------------------------------AAQL 141
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
A++ GA++HI H+S + L+L+ AK G +T E CPH+L +
Sbjct: 142 AEEA-------GANVHIAHVSSGEA-LELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNG 193
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
K PP+R ++E LWE + +G ID ++SDH+P E K + KA G L+
Sbjct: 194 AWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLE 252
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
LP+ + G K G++LE L SE PA++ G KG IA+G ADLV+ +P+ E+++
Sbjct: 253 TRLPILLTEGVKRGLSLETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVT 312
Query: 360 NDHPVHMKHPSISAYLGRRLSGKVLAT 386
+ + + G ++GK ++T
Sbjct: 313 AEE--IESKADWTPFEGMEVTGKPVST 337
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. Length = 337 |
| >gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 3e-64
Identities = 134/398 (33%), Positives = 194/398 (48%), Gaps = 28/398 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PG ID+H HL DPG E SG+KAAA GG TT+ DMP N+ P + ETL+ K+
Sbjct: 39 PGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP-NTKPPIDTPETLEWKLQRL 97
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEA--LLNAGVLGLKSFMCPSGI-NDFPMTNASHIK 118
+K VDV +GG V + EA L AG +G S + + M A
Sbjct: 98 KKVSLVDVHLYGG-VTQGNQGKELTEAYELKEAGAVGRMFTDDGSEVQDILSMRRALEYA 156
Query: 119 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178
V P+ +HAE V E + L RPP EE A+ LL
Sbjct: 157 AIAGV------PIALHAEDPDLIYGGVMHEG----PSAAQLGLPARPPEAEEVAVARLLE 206
Query: 179 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238
+AK G +HI H+S S L+L+++AK+ G IT E PH+L S E++
Sbjct: 207 LAKHA-------GCPVHICHISTKES-LELIVKAKSQGIKITAEVTPHHLLLSEEDVARL 258
Query: 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
D K PP+R+ ++ L E L DG ID++++DH+P E K F A GI L
Sbjct: 259 DGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK---EFAAAPPGIPGL 315
Query: 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 358
+ LP+ K ++L+ L S PA++ G KG + GN AD+ V++ + E+ +
Sbjct: 316 ETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADITVFDLKKEWTI 375
Query: 359 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
+ + + K + + G L GK +ATI RG +VY++
Sbjct: 376 NAET-FYSK-AKNTPFEGMSLKGKPIATILRGKVVYED 411
|
In contrast to the homodimeric type of dihydroorotase found in E. coli, this class tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and P. aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present. The seed for this model does not include any example of the dihydroorotase domain of eukaryotic multidomain pyrimidine synthesis proteins. All proteins described by This model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 411 |
| >gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 7e-64
Identities = 131/422 (31%), Positives = 206/422 (48%), Gaps = 78/422 (18%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PGL+D+H HL +PG+ + E +G++AAAAGG TT++ MP N+ P + E ++ +D A
Sbjct: 53 PGLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRA 111
Query: 62 EKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMT 112
++ VDV G G + E AL AGV+ +D P+
Sbjct: 112 KEAGLVDVLPVGAITKGLAGEELTE-------FGALKEAGVVAFS--------DDGIPVQ 156
Query: 113 NASHIKEGLSVLARYKRPL-LVHAEMEKGSERHVKLEDDTLDTRSYSTY----------- 160
+A ++ L Y + L L+ A+ ED +L T
Sbjct: 157 DARLMRRAL----EYAKALDLLIAQHC---------EDPSL------TEGGVMNEGEVSA 197
Query: 161 ---LKTRPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG 216
L P EE I R++L A+ T GA +HI H+S A S ++L+ AK G
Sbjct: 198 RLGLPGIPAVAEEVMIARDVLL-AEAT-------GARVHICHVSTAGS-VELIRWAKALG 248
Query: 217 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 276
+T E PH+L + E++ D +K PP+R ++E L E L DG ID +++DH+P
Sbjct: 249 IKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPH 308
Query: 277 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVS 335
E K + F A GI+ L+ L + ++ K G+ LEQL + PA++ G +
Sbjct: 309 AREEKECE---FEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILG-LP 364
Query: 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-SAYLGRRLSGKVLATISRGNLVY 394
G +A G ADLV+++PEAE+ +D + + ++G +L GKV+ TI G +VY
Sbjct: 365 AGPLAEGEPADLVIFDPEAEWTVDGE---DFASKGKNTPFIGMKLKGKVVYTIVDGKIVY 421
Query: 395 KE 396
++
Sbjct: 422 QD 423
|
Length = 423 |
| >gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 2e-63
Identities = 129/388 (33%), Positives = 193/388 (49%), Gaps = 28/388 (7%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PGL+D+H HL +PG E SG KAAAAGG TT++ MP N++P + ++L +
Sbjct: 13 APGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVIDNPAVVELLKNR 71
Query: 61 AEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
A+ V V G L + + LL AG +G + P+ +A ++
Sbjct: 72 AKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGF-------SDDGKPIQDAELLRR 124
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
L A P++VH E + + + + +R L PP E + L +
Sbjct: 125 ALEYAAMLDLPIIVHPE-DPSLAGGGVMNEGKVASRLG---LPGIPPEAETIMVARDLEL 180
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
A+ T GA +H HLS A S L+L+ +AK G +T E PH+L E + D
Sbjct: 181 AEAT-------GARVHFQHLSTARS-LELIRKAKAKGLPVTAEVTPHHLLLDDEALESYD 232
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
T K PP+R ++E L EAL DG ID ++SDH+P E K L F +A GI L+
Sbjct: 233 TNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLP---FAEAPPGIIGLE 289
Query: 300 FVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 358
LP+ W+ K G+ TL L S PAK+ G + G + +G ADLV+++P+AE+ +
Sbjct: 290 TALPLLWTLLVKGGLLTLPDLIRALSTNPAKILG-LPPGRLEVGAPADLVLFDPDAEWIV 348
Query: 359 DNDHPVHMKHPSISAYLGRRLSGKVLAT 386
D + K + + G++L G+VLAT
Sbjct: 349 DEET-FRSK-SKNTPFDGQKLKGRVLAT 374
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. Length = 374 |
| >gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 2e-62
Identities = 122/408 (29%), Positives = 189/408 (46%), Gaps = 28/408 (6%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG ID H HL+ P G + F SGT+AAAAGG TT+ID + + ++ E ++
Sbjct: 50 LPGGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSL-LEAVEKWR 108
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 118
A+ + +D GF + L L+ G+ K FM G+ M + +
Sbjct: 109 GKADGKSVIDYGFHMIITDWTDSVIEELPELVKKGISSFKVFMAYKGLL---MVDDEELL 165
Query: 119 EGLSVLARYKRPLLVHAEMEKGS---ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175
+ L ++VHAE G E KL Y +RPP E A
Sbjct: 166 DVLKRAKELGALVMVHAE--NGDVIAELQKKLLAQGKTGPEYHAL--SRPPEVEAEATAR 221
Query: 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235
+ +A+ GA L+IVH+S + + D + A+ G + ETCP YL +
Sbjct: 222 AIRLAELA-------GAPLYIVHVS-SKEAADEIARARKKGLPVYGETCPQYLLLDDSDY 273
Query: 236 PDGDT---RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
++ C+PP+R ++E LW+ L G + + SDH P K + +F K
Sbjct: 274 WKDWFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIP 333
Query: 293 GGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVW 350
G+ ++ +P+ WS G G +TLE+ S PAK+ G KG IA+G+ ADLV+W
Sbjct: 334 NGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIW 393
Query: 351 EPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+P AE + D H + + G ++ G + TISRG +V ++G
Sbjct: 394 DPNAEKTISADTH-HHN-VDYNIFEGMKVKGWPVVTISRGKVVVEDGE 439
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. Length = 447 |
| >gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 4e-53
Identities = 119/428 (27%), Positives = 191/428 (44%), Gaps = 68/428 (15%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
MPG ID H H++ P G + F +GT+AAA GG TT+ID L ++L+ +
Sbjct: 48 MPGGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQP-----KGQSLREAL 102
Query: 59 DA----AEKRIYVDVGFWGGL--VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMT 112
+A A + +D GF + E + + L+ G+ K FM M
Sbjct: 103 EAWHGKAAGKAVIDYGFHMIITDWNEVVLDE--MPELVEEGITSFKLFM---AYKGALML 157
Query: 113 NASHIKEGLSVLARYKRPLLVHAE------------MEKGSERHVKLEDDTLDTRSYSTY 160
+ + L A +VHAE + +G T
Sbjct: 158 DDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEG------------KTGPEYHA 205
Query: 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSIT 220
L +RPP E A + +A+ GA L+IVH+S +L+ + A+ G +
Sbjct: 206 L-SRPPEVEGEATNRAIMLAELA-------GAPLYIVHVS-CKEALEAIRRARARGQRVF 256
Query: 221 VETCPHYLAFSAEEI--PDGDT--RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP- 275
ETCP YL E PD ++ +PP+RD +++ LW L DG + ++++DH P
Sbjct: 257 GETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPF 316
Query: 276 TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-- 332
+ K L G+F K G ++ +P+ +S G G +TL + S PAK+ G
Sbjct: 317 CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLY 376
Query: 333 -QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLATISR 389
+ KG IA+G AD+V+W+P A + H ++ + Y G ++G + T+SR
Sbjct: 377 PR--KGTIAVGADADIVIWDPNATKTISAS----TLHSNVDYNPYEGFEVTGWPVTTLSR 430
Query: 390 GNLVYKEG 397
G +V ++G
Sbjct: 431 GEVVVEDG 438
|
Length = 459 |
| >gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 3e-52
Identities = 123/355 (34%), Positives = 178/355 (50%), Gaps = 27/355 (7%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG IDVH H +PG T E + +G+++AAAGG+TT++D P N+DP T+ E+ K +
Sbjct: 53 LPGGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAEL 111
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKE 119
A ++ VD G GG+ N LE+L GV L + FM S + + +E
Sbjct: 112 AARKSIVDFGINGGVTG----NWDPLESLWERGVFALGEIFMADS-TGGMGI-DEELFEE 165
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
L+ AR VHAE E + KL D ++S Y RP + E AA+ L V
Sbjct: 166 ALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAY---RPAAAEAAAVERALEV 222
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
A +T GA +HI H+S +D IT E PH+L S +
Sbjct: 223 ASET-------GARIHIAHIS-TPEGVDAARREG-----ITCEVTPHHLFLSRRDWERLG 269
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
T K PP+R +E LWE L DG ID+++SDH+P E K D A G+ ++
Sbjct: 270 TFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKDAD---IWDAPSGVPGVE 326
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 354
+LP+ + RK + LE++ + PA++ G KG IA G ADLV+ +P+A
Sbjct: 327 TMLPLLLAAVRKNRLPLERVRDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDA 381
|
Length = 443 |
| >gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 6e-52
Identities = 126/429 (29%), Positives = 204/429 (47%), Gaps = 68/429 (15%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG+ID H +PG E +G++AA GG+T + +MP N++P T + E L K+
Sbjct: 55 LPGVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMP-NTNPLTTTAEALADKLAR 113
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPMTNASH 116
A R++ D F+ G +NA + LE L G G+K FM S + D
Sbjct: 114 ARHRMHCDFAFYVGGTRDNADELAELERL--PGCAGIKVFMGSSTGDLLVED-------- 163
Query: 117 IKEGL-SVLARYKRPLLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSW--EEA 171
EGL +L +R H+E E + +++E D S++ P W EEA
Sbjct: 164 -DEGLRRILRNGRRRAAFHSEDEYRLRERKGLRVEGD------PSSH-----PVWRDEEA 211
Query: 172 AI---RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 228
A+ R L+ +A++T G +H++H+S A +D L + K D TVE PH+L
Sbjct: 212 ALLATRRLVRLARET-------GRRIHVLHVSTA-EEIDFLADHK---DVATVEVTPHHL 260
Query: 229 AFSAEEIPDG-DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 287
+A E + T + PPIRDA +++ LW + G +D+L SDH+P E K
Sbjct: 261 TLAAPECYERLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEK------ 314
Query: 288 FLKAW----GGISSLQFVLPVTWSY---GRKYGVTLEQLASWWSERPAKLAGQVSKGAIA 340
K + G++ +Q ++P+ + GR ++LE+ S PA++ G KG IA
Sbjct: 315 -AKPYPASPSGMTGVQTLVPIMLDHVNAGR---LSLERFVDLTSAGPARIFGIAGKGRIA 370
Query: 341 IGNHADLVVWEPEAEFELDNDHPVHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEGNH 399
+G AD + + + + N+ + + Y G+ ++G + TI RG V +G
Sbjct: 371 VGYDADFTIVDLKRRETITNE---WIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGEL 427
Query: 400 APAACGSPI 408
G P+
Sbjct: 428 VGPPTGEPV 436
|
Length = 444 |
| >gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 1e-50
Identities = 117/412 (28%), Positives = 191/412 (46%), Gaps = 34/412 (8%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM--PLNSDPSTISTETLKL 56
+PG IDVH HL+ P G + F +GTKAAAAGG TT+ID P + T + ET
Sbjct: 50 LPGGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHE 109
Query: 57 KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH 116
K AE + +D GF + N + + G+ SF + M +
Sbjct: 110 K---AEGKSVIDYGFHMMITDWNDHVLEEHIPEVVEE--GITSFKVFMAYKNLLMVDDEE 164
Query: 117 IKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+ E L L VHAE + + R + + + S RPP E A
Sbjct: 165 LFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALS-----RPPESEAEA 219
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
+ + +A D P L++VH+S A + +D + EA+ G + ETCP YL
Sbjct: 220 VARAIALAA--LADAP-----LYVVHVSTADA-VDEIAEAREKGQPVYGETCPQYLVLDD 271
Query: 233 E--EIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNF 288
+ P + ++ C+PP+R+ +++ LW AL G + + SDH P + K + + +F
Sbjct: 272 TAYDKPGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFAQKKAIGKDDF 331
Query: 289 LKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHAD 346
K G ++ + + + G G +TLE+ S PAK+ KG IA+G+ AD
Sbjct: 332 TKIPNGGPGVEERMTLLFDEGVAKGRITLEKFVELTSTNPAKIFNMYPQKGTIAVGSDAD 391
Query: 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+V+W+P + + H + + + G ++ G V++ +SRG +V ++G
Sbjct: 392 IVIWDPNRTTVISAET--HHDNADYNPFEGFKVQGAVVSVLSRGRVVVEDGQ 441
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. Length = 454 |
| >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 3e-44
Identities = 115/431 (26%), Positives = 177/431 (41%), Gaps = 66/431 (15%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG+ID H +PG T S ++AA AGGIT+ ++MP N++P T + E L+ K
Sbjct: 53 LPGMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQI 111
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN---DFPMTNASHI 117
A +R + F+ G + N ++ L V G+K FM S N D P
Sbjct: 112 AAQRSLANYSFYFG-ATND--NLDEIKRLDPKRVCGVKVFMGASTGNMLVDNP------- 161
Query: 118 KEGLSVLARYKR----PLLVHAEME----KGSERHVKLEDDTLDT------RSYSTYLKT 163
L R R + H E ++ + D + RS
Sbjct: 162 ----ETLERIFRDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRS------- 210
Query: 164 RPPSWEEAAIR------ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 217
EA + L AK G LH++H+S A L L
Sbjct: 211 -----AEACYKSSSLAVSL---AKKH-------GTRLHVLHISTAKE-LSLFENGPLAEK 254
Query: 218 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 277
IT E C H+L F + KC P I+ A+++E L +AL D ID++++DH+P
Sbjct: 255 RITAEVCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADDRIDVIATDHAPHT 314
Query: 278 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 337
E K +G + +A G+ +Q LP + ++LE++ S PA L +G
Sbjct: 315 WEEK---QGPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFDIKERG 371
Query: 338 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
I G ADLV+ + + + + + + K S + GR +V T G LVY G
Sbjct: 372 FIREGYWADLVLVDLNSPWTVTKE-NILYK-CGWSPFEGRTFRSRVATTFVNGQLVYHNG 429
Query: 398 NHAPAACGSPI 408
+ G +
Sbjct: 430 QLVESCRGQRL 440
|
Length = 444 |
| >gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 9e-44
Identities = 116/423 (27%), Positives = 183/423 (43%), Gaps = 58/423 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG+ID H +PG E + ++A A GG+T+ ++MP N+ P T + L K+
Sbjct: 55 LPGVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP-NTKPLTTTQAALDDKLAR 113
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASH--- 116
A ++ V+ GF+ G P+N L LL A G+K FM +SH
Sbjct: 114 AAEKCVVNYGFFIGATPDN------LPELLTANPTCGIKIFM-----------GSSHGPL 156
Query: 117 --IKEGL--SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+E + A R + VHAE + D +S EEAA
Sbjct: 157 LVDEEAALERIFAEGTRLIAVHAEDQARIRARRAEFAGISDPADHSQIQD------EEAA 210
Query: 173 I---RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 229
+ R L ++K + LHI+HLS A +LL + K + +T E P +L
Sbjct: 211 LLATRLALKLSKKYQR-------RLHILHLSTAIE-AELLRQDKPS--WVTAEVTPQHLL 260
Query: 230 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 289
+ + T + PP+R + E LW+AL DG ID +++DH+P E K +
Sbjct: 261 LNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKAQP---YP 317
Query: 290 KAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV 349
+ G+ ++ LP+ + + T+ Q+ W S A+ G +KG IA G ADLV+
Sbjct: 318 NSPSGMPGVETSLPLMLTAAMRGKCTVAQVVRWMSTAVARAYGIPNKGRIAPGYDADLVL 377
Query: 350 WEPEAEFELDNDHPVH----MKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACG 405
+L+ PV + S + G L+G + TI G +V+ G G
Sbjct: 378 ------VDLNTYRPVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVNTEVRG 431
Query: 406 SPI 408
+
Sbjct: 432 QAL 434
|
Length = 438 |
| >gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 9e-42
Identities = 124/441 (28%), Positives = 196/441 (44%), Gaps = 57/441 (12%)
Query: 1 MPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 57
+PG +D H H+D P G + F +GT +AA GG TT+I ++ E ++
Sbjct: 53 LPGGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLR-EAVEDY 111
Query: 58 VDAAEKRIYVDVGFWGGLV---PENAYNASALEALLNAGVLGLKSFMCPSG--INDFPMT 112
A + +D F L+ P L AL+ G K FM ++D +
Sbjct: 112 HRRAAGKAVIDYAF--HLIVADPTEEVLTEELPALIAQGYTSFKVFMTYDDLKLDDRQIL 169
Query: 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST---YLKTRPPSWE 169
+ L+V R+ ++VHAE + + L + + +RP E
Sbjct: 170 ------DVLAVARRHGAMVMVHAE----NHDMIAWLTKRLLAAGLTAPKYHAISRPMLAE 219
Query: 170 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 229
A + +A+ D P + IVH+S + + + A+ G I ETCP YL
Sbjct: 220 REATHRAIALAE--LVDVP-----ILIVHVSGREA-AEQIRRARGRGLKIFAETCPQYLF 271
Query: 230 FSAEEIPDGD----TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP---TVPELKL 282
+AE++ D ++ C+PP RD AN+E +W L DG ++ SSDH+P + KL
Sbjct: 272 LTAEDL-DRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKL 330
Query: 283 L--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGA 338
+F GI ++ LP+ +S G G ++L + + S PAKL G KGA
Sbjct: 331 AAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGA 390
Query: 339 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLATISRGNLVYKE 396
IAIG AD+ +W+P+ E + N H + + Y G R++G + +SRG +V ++
Sbjct: 391 IAIGADADIAIWDPDREVTITNA----DLHHAADYTPYEGMRVTGWPVTVLSRGRVVVED 446
Query: 397 GN-HAPA------ACGSPILA 410
G A A P A
Sbjct: 447 GELVAERGSGQFLARSLPDRA 467
|
Length = 477 |
| >gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 5e-38
Identities = 110/397 (27%), Positives = 174/397 (43%), Gaps = 55/397 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PGLIDVH HL D + E SGTKAA GGIT + DMP N+ P + +T + ++
Sbjct: 46 LPGLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMP-NTKPPIMDEKTYEKRMRI 104
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
AEK+ Y D L+ N A ++A K FM S T +
Sbjct: 105 AEKKSYADY-ALNFLIAGNCEKAEEIKADFY------KIFMGAS-------TGGIFSENF 150
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
A + VHAE D + + RPP E AI L
Sbjct: 151 EVDYACAPGIVSVHAE----------------DPELIREFPE-RPPEAEVVAIERALEAG 193
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K + LHI H+S L L++++ N ++ E PH+L + ++
Sbjct: 194 KKLKKP-------LHICHISTK-DGLKLILKS--NLPWVSFEVTPHHLFLTRKDYERNP- 242
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
K PP+R +++ LWE I +++SDH+P E K + G GI L+
Sbjct: 243 LLKVYPPLRSEEDRKALWENF--SKIPIIASDHAPHTLEDK--EAGA-----AGIPGLET 293
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN 360
+P+ K ++L + + PA++ G + G I GN+A+ V++ + E+ +
Sbjct: 294 EVPLLLDAANKGMISLFDIVEKMHDNPARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKA 352
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
+ ++ K + Y G +L GKV+ TI RG +V ++
Sbjct: 353 EE-LYTK-AGWTPYEGFKLKGKVIMTILRGEVVMEDD 387
|
Length = 398 |
| >gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-34
Identities = 98/370 (26%), Positives = 160/370 (43%), Gaps = 49/370 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+P D+H H PG TE E F +GT +A GG T ++DMP N++ K+
Sbjct: 45 LPAATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMP-NNNIPIKDYNAFSDKLGR 103
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+ YVD + NA +L+ +GLK +M + TN + I+ G
Sbjct: 104 VAPKAYVDFSLYSMETGNNA-------LILDERSIGLKVYMGGT-----TNTNGTDIEGG 151
Query: 121 -LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
+ + P+ HAE+ + +H ++++ + RP E A++ + +
Sbjct: 152 EIKKINEANIPVFFHAELSECLRKH------QFESKNLRDHDLARPIECEIKAVKYVKNL 205
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
T+ I H+S L E PH+L +++P G
Sbjct: 206 DLKTK----------IIAHVSSIDVIGRFLREVT-----------PHHL-LLNDDMPLG- 242
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
+ K PP+RD +E+L E + G D+LSSDH+P E D+ F A GI ++
Sbjct: 243 SYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEE----DKQEFEYAKSGIIGVE 298
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
+P+ + +K + L+ L ERPA L G + KG I G AD + ++ ++
Sbjct: 299 TRVPLFLALVKKKILPLDVLYKTAIERPASLFG-IKKGKIEEGYDADFMAFDFTNIKKI- 356
Query: 360 NDHPVHMKHP 369
ND +H K P
Sbjct: 357 NDKRLHSKCP 366
|
Length = 409 |
| >gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 7e-30
Identities = 103/406 (25%), Positives = 164/406 (40%), Gaps = 77/406 (18%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PG ID+H HL + E SGT AA GG+T + DMP N+ P + E + K+
Sbjct: 46 LPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP-NTIPPLNTPEAITEKLAE 104
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
E VD + G V ++ E + + G K F P + +E
Sbjct: 105 LEYYSRVDYFVYSG-VTKD------PEKVDKLPIAGYKIF--PEDLER---------EET 146
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
VL + ++ ++H E+ + L+ + K R W E A +
Sbjct: 147 FRVLLKSRKLKILHPEV------PLALKSNR----------KLRRNCWYEIAALYYVK-- 188
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
+ ++HI H S+ + + AK G TV+ PH+L + E D
Sbjct: 189 ---------DYQNVHITHASNPRT----VRLAKELG--FTVDITPHHLLVNGE----KDC 229
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
K PPIRD + L +AL + +D ++SDH+P KL + GI++L F
Sbjct: 230 LTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKLQ---PYEVCPPGIAALSF 284
Query: 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV-----WEPEAE 355
P ++ K +++++ S PA++ G + G I G A+ V W +
Sbjct: 285 TPPFIYTLVSKGILSIDRAVELISTNPARILG-IPYGEIKEGYRANFTVIQFEDWRYSTK 343
Query: 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401
+ + P+ G L V ATI +G L Y EG P
Sbjct: 344 YSKVIETPL----------DGFELKASVYATIVQGKLAYLEGEVFP 379
|
Length = 392 |
| >gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 55/409 (13%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI-----DMPLNSDPSTISTETLK 55
PGL+D+ A L +PG S AA AGG+T+L+ D L+ +P + E LK
Sbjct: 54 CPGLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPPDTDPVLD-EPGLV--EMLK 110
Query: 56 LKVDAAEK-RIY----VDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP 110
+ + +Y + VG G ++ E L AG +G + P
Sbjct: 111 FRARNLNQAHVYPLGALTVGLKGEVLTEMV-------ELTEAGCVGFSQ-------ANVP 156
Query: 111 MTNASHIKEGLSVLARYK-----RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRP 165
+ + + L + + RPL + +G + +R L P
Sbjct: 157 VVDTQVLLRALQYASTFGFTVWLRPLDAF--LGRGGVAA----SGAVASR---LGLSGVP 207
Query: 166 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 225
+ E A+ + + + T GA +H+ LS A+ + L+ AK G +T +
Sbjct: 208 VAAETIALHTIFELMRVT-------GARVHLARLSSAAG-VALVRAAKAEGLPVTCDVGV 259
Query: 226 HYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE 285
+++ +I D++F+ PP+R ++E + AL DG ID + SDH+P + KLL
Sbjct: 260 NHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEKLLP- 318
Query: 286 GNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHA 345
F +A G + L+ +LP+T + + V L + + + PA++ G + G +A G A
Sbjct: 319 --FAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVLG-LPAGRLAEGAPA 375
Query: 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
DL V++P+A + ++ + +LG L G+V AT+ G + +
Sbjct: 376 DLCVFDPDAHWRVEPRALKSQGKN--TPFLGYELPGRVRATLVAGQVAF 422
|
Length = 425 |
| >gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 108/411 (26%), Positives = 176/411 (42%), Gaps = 36/411 (8%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST-ETLKLK 57
MPG ID H HL P G + F SG AA AGG T ID + + + ++ E + K
Sbjct: 56 MPGGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKK 115
Query: 58 VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASH 116
AEK +D GF + + + +E L+ G+ K FM G M
Sbjct: 116 ---AEKSC-MDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGS---LMVTDEL 168
Query: 117 IKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+ EG +VHAE + +G +R ++L + + S RPP E A
Sbjct: 169 LLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS-----RPPLLEGEA 223
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
+ +AK T L++VH+ + +++ + A+ +G + E L
Sbjct: 224 TARAIRLAKFVNTP-------LYVVHVM-SIDAMEEIARARKSGQRVIGEPVVSGLVLDD 275
Query: 233 EEIPDGDTRFKC----APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 288
++ D D +PPIR A + + L AL G + ++ +DH P K + +F
Sbjct: 276 SKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPFNSTQKAFGKDDF 335
Query: 289 LKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHAD 346
K G++ ++ + + W + G ++ S AK+ KGAI G+ AD
Sbjct: 336 RKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDAD 395
Query: 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
+++ P + F + H + Y GRR GKV TIS+G +V++ G
Sbjct: 396 IIILNPNSTFTISAK--THHSRIDTNVYEGRRGKGKVEVTISQGRVVWENG 444
|
Length = 486 |
| >gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 205 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 264
SL+LL + K+ G+ + E H+L + +T K PP+R ++ L EAL +G
Sbjct: 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEG 267
Query: 265 HIDMLSSDHSPTVPELKLL--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLAS 321
ID L+S HS K L DE F GI S+ + ++Y K G +T +L+
Sbjct: 268 KIDFLTSLHSAKSNSKKDLAFDEAAF-----GIDSICEYFSLCYTYLVKEGIITWSELSR 322
Query: 322 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 381
+ S PA+ G + G I +G ADLV+++P +D+ + S Y G L G
Sbjct: 323 FTSYNPAQFLGL-NSGEIEVGKEADLVLFDPNESTIIDD---------NFSLYSGDELYG 372
Query: 382 KVLATISRGNLVYK 395
K+ A I +G L +
Sbjct: 373 KIEAVIIKGKLYLE 386
|
Length = 386 |
| >gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 5e-22
Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 31/388 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
PGL+D+++H +PG E E S AAAAGG T + +P ++ P + TL A
Sbjct: 57 PGLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQA 115
Query: 62 EKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
++ V + FWG L + L L AGV+G + P+ N + ++
Sbjct: 116 QQIPPVQLHFWGALTLGGQGKQLTELAELAAAGVVGFT--------DGQPLENLALLRRL 167
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L L +P+ + + V E + L P S E A+ LL +
Sbjct: 168 LEYLKPLGKPVALWPCDRSLAGNGVMREGLL----ALRLGLPGDPASAETTALAALLELV 223
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
T +H++ +S A S ++L+ +AK G IT T +L E + D
Sbjct: 224 AAIGTP-------VHLMRISTARS-VELIAQAKARGLPITASTTWMHLLLDTEALASYDP 275
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
+ PP+ + ++++ L E + G ID ++ DH+P E K + F +A G L+
Sbjct: 276 NLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYEEKTV---AFAEAPPGAIGLEL 332
Query: 301 VLPVTW-SYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359
LP+ W + ++ QL S PA+ GQ ++A G A+L++++P+ + +
Sbjct: 333 ALPLLWQNLVETGELSALQLWQALSTNPARCLGQEPP-SLAPGQPAELILFDPQKTWTVS 391
Query: 360 NDHPVHMKHPSI-SAYLGRRLSGKVLAT 386
+ S + +LG+ L G+VL T
Sbjct: 392 AQ---TLHSLSRNTPWLGQTLKGRVLQT 416
|
Length = 418 |
| >gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-21
Identities = 83/281 (29%), Positives = 129/281 (45%), Gaps = 64/281 (22%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
+PGLIDVH HL +PG T E F SGTKAA AGG T + MP N++PS + +LKL
Sbjct: 5 LPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQSL 63
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A+ + D F G NA L + +GLK ++ N+ T ++ I +
Sbjct: 64 AQAKARCDYAFSIGATSTNAATVGE----LASEAVGLKFYL-----NE---TFSTLILDK 111
Query: 121 LSVLARY------KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
++ A + +P++ HA+ S L AA+
Sbjct: 112 ITAWASHFNAWPSTKPIVTHAK---------------------SQTL---------AAV- 140
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
LL + R +HI H+S ++L+ AK G +T E PH+L S ++
Sbjct: 141 -LLLASLHNR--------SIHICHVSSKEE-INLIRLAKARGLKVTCEVSPHHLFLSQDD 190
Query: 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 275
+P G +++ P + ++E LWE L +ID ++DH+P
Sbjct: 191 LPRG--QYEVRPFLPTREDQEALWENL--DYIDCFATDHAP 227
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. Length = 344 |
| >gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 9/206 (4%)
Query: 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 250
H +S A S + L AK G +T ++L+ + +I + T FK +PP+R
Sbjct: 231 RGRYHAAQISCAES-AEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRT 289
Query: 251 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 310
++ + EA+ G ID++ S H P + K L F +A G L+ +L
Sbjct: 290 EDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRLP---FSEAAAGAIGLETLLAAALRLYH 346
Query: 311 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 370
V L +L S RPA++ G + G + G AD++V + + + +D P +K S
Sbjct: 347 NGEVPLLRLIEALSTRPAEIFG-LPAGTLKPGAPADIIVIDLDEPWVVD---PEDLKSRS 402
Query: 371 I-SAYLGRRLSGKVLATISRGNLVYK 395
+ + R G+V+ TI G VY+
Sbjct: 403 KNTPFEEARFQGRVVRTIVAGKTVYE 428
|
Length = 429 |
| >gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 56/309 (18%), Positives = 87/309 (28%), Gaps = 89/309 (28%)
Query: 4 LIDVHAHLDDPGRTEWEGFP------------------SGTKAAAAGGITTLIDMPLNSD 45
ID H HLD +A AGG+TT++DM ++
Sbjct: 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STP 59
Query: 46 PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS--------ALEALLNAGVLGL 97
P T + ++ +AA + V G+ A L L G +GL
Sbjct: 60 PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119
Query: 98 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157
K + + ++ L + P+++HA
Sbjct: 120 KLAGPYT----ATGLSDESLRRVLEEARKLGLPVVIHAG--------------------- 154
Query: 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-SLDLLMEAKTNG 216
A+ +L+ G + I H+S L+LL EA
Sbjct: 155 -------ELPDPTRALEDLV--------ALLRLGGRVVIGHVSHLDPELLELLKEAG--- 196
Query: 217 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 276
+++E CP RD E L L G L +D P
Sbjct: 197 --VSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPH 238
Query: 277 VPELKLLDE 285
LL
Sbjct: 239 PLGTDLLAL 247
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275 |
| >gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 2e-09
Identities = 69/360 (19%), Positives = 112/360 (31%), Gaps = 64/360 (17%)
Query: 1 MPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 57
+PGLID H HL+ P G +E +G KA G TT++D P +++ S + +
Sbjct: 3 LPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIMEG 62
Query: 58 VDAAEKR-----IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMT 112
+ AA K + + G A E L +
Sbjct: 63 LAAAPKLEPNVELLLKGSVGGRAELGEVVIDGAGEEAKAGA--DLIKVIE--DGGKTAKA 118
Query: 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
L LA + P + H ++ E + ++ S E A
Sbjct: 119 IDGV----LPALAPHDPPTVSHEGLKNEVE-LAEETEEAEKLGLLVHIH-AAEASGEVNA 172
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
I + + H +HL D + L++ +G + S
Sbjct: 173 ILGGVDLLA-------------HCLHLDDEAI---ELLKEAGSGIAHCP--------LSN 208
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
E I RF + I L S + +L D+G +
Sbjct: 209 ESILHRGGRF--------------SLMSGDAQGIGELGSGGARLA---RLADKGGVVGLG 251
Query: 293 GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWE 351
+ L Y G++ + + PAK G G+I +G ADLVV +
Sbjct: 252 TDGAGLNGKD----FYLDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVVVD 307
|
This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 |
| >gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 37
+PGLID+H HL E +G AA AGG+TT+
Sbjct: 32 LPGLIDMHVHLG--EEPGRETLETGAAAALAGGVTTV 66
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66 |
| >gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 46
PGL+D + +PG E S ++AAAAGG+T++I MP ++DP
Sbjct: 59 APGLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDP 103
|
Length = 429 |
| >gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase | Back alignment and domain information |
|---|
Score = 47.5 bits (112), Expect = 6e-06
Identities = 66/356 (18%), Positives = 101/356 (28%), Gaps = 67/356 (18%)
Query: 1 MPGLIDVHAHLDDPGRTE-----WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 55
+PGL+D+H H ++E +G A A G+T+ +
Sbjct: 8 LPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELLT------ 61
Query: 56 LKVDAAEKRIYVDVGFWGGLVPENAYN-ASALEALLNAGVLGLKSFMCPSGINDFPMTNA 114
R+ V V G + N AL+ L+ + S ++
Sbjct: 62 --------RLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLDG------ 107
Query: 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
GL L R H + L E A
Sbjct: 108 ----PGLEALLRE-----AKKAGLILLVGHAPADLGDGAVEKGLDALFLLALGHEVAEDL 158
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
L P G LH++ + L+ + L +
Sbjct: 159 HLA------EILDPGAGLGLHVIAAAADLLLEGLVA-------AHAGGLAVVPLELLLRD 205
Query: 235 IPDGDTRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWG 293
FK PP+R ++E L E L G L SDH+P P
Sbjct: 206 AAAAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDSP--------------- 250
Query: 294 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLV 348
+ +L G+T E+ + PA+L G G + +G ADLV
Sbjct: 251 --AGPGDLLEAALFLAALAGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRADLV 304
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 304 |
| >gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVD 59
PG IDVH H D + A A GITT++ L S +
Sbjct: 133 PGAIDVHVHFDSAQLVD---------HALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQ 183
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 98
AAE V+ GF G N+ +AL + AG GLK
Sbjct: 184 AAEA-WPVNFGFLG---RGNSSKPAALIEQVEAGACGLK 218
|
Length = 569 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 84/410 (20%), Positives = 132/410 (32%), Gaps = 144/410 (35%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM-------PLNSD-----PSTI 49
PG IDVH H D G+ W+ + ++ G+TT++ P N D +
Sbjct: 53 PGFIDVHTHYD--GQVFWD---PDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLM 107
Query: 50 STETLKLK------------VDAAEKRIY-VDVGFWGGLVPENAYNASAL---------- 86
+ +DA E R V+V LV A + +
Sbjct: 108 EGLVALGEGLPWGWATFAEYLDALEARPPAVNVAA---LVGHAALRRAVMGLDAREATEE 164
Query: 87 ----------EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL----SVLARYKRPLL 132
EAL AG LG+ L V ARY
Sbjct: 165 ELAKMRELLREAL-EAGALGI-------STGLAYAPRLYAGTAELVALARVAARYGGVYQ 216
Query: 133 VHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 192
H V+ E D++ A+ ELL + ++T G
Sbjct: 217 TH----------VRYEGDSILE-----------------ALDELLRLGRET-------GR 242
Query: 193 HLHIVHLSDASS--------SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC 244
+HI HL A + L L+ A+ G +T + P Y A S ++
Sbjct: 243 PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYP-YGAGSEDD---------- 291
Query: 245 APPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPV 304
+M + M SD +++G + VL
Sbjct: 292 -------------VRRIMAHPVVMGGSD--------GGALGKPHPRSYGDFT---RVLGH 327
Query: 305 TWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 354
+ RK ++LE+ + PA++ G +G IA G AD+VV++P+
Sbjct: 328 -YVRERK-LLSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIVVFDPDT 375
|
Length = 415 |
| >gnl|CDD|238631 cd01306, PhnM, PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 23/91 (25%)
Query: 259 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 318
E G +D+LSSD+ P +SL L + G +L +
Sbjct: 241 ELAAHGLLDILSSDYVP--------------------ASL---LHAAFRLADLGGWSLPE 277
Query: 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVV 349
+ S PA+ G +G+IA G ADL++
Sbjct: 278 AVALVSANPARAVGLTDRGSIAPGKRADLIL 308
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. Length = 325 |
| >gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 23/94 (24%)
Query: 302 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVWEPEAEFELDN 360
L + + KYG++ E+ + PAK+ G + G++ G ADLVVW N
Sbjct: 288 LNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVW---------N 338
Query: 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
P+ K G LVY
Sbjct: 339 GDPLEPT-------------SKPEQVYIDGRLVY 359
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 411 | |||
| COG0044 | 430 | PyrC Dihydroorotase and related cyclic amidohydrol | 100.0 | |
| PLN02795 | 505 | allantoinase | 100.0 | |
| PRK13404 | 477 | dihydropyrimidinase; Provisional | 100.0 | |
| PRK06189 | 451 | allantoinase; Provisional | 100.0 | |
| PRK07627 | 425 | dihydroorotase; Provisional | 100.0 | |
| PRK08044 | 449 | allantoinase; Provisional | 100.0 | |
| PRK09059 | 429 | dihydroorotase; Validated | 100.0 | |
| PRK07369 | 418 | dihydroorotase; Provisional | 100.0 | |
| PRK08417 | 386 | dihydroorotase; Provisional | 100.0 | |
| PRK01211 | 409 | dihydroorotase; Provisional | 100.0 | |
| cd01318 | 361 | DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; | 100.0 | |
| TIGR03178 | 443 | allantoinase allantoinase. This enzyme carries out | 100.0 | |
| PRK07575 | 438 | dihydroorotase; Provisional | 100.0 | |
| PLN02942 | 486 | dihydropyrimidinase | 100.0 | |
| cd01315 | 447 | L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas | 100.0 | |
| TIGR00857 | 411 | pyrC_multi dihydroorotase, multifunctional complex | 100.0 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 100.0 | |
| PRK09060 | 444 | dihydroorotase; Validated | 100.0 | |
| PRK08323 | 459 | phenylhydantoinase; Validated | 100.0 | |
| PRK09236 | 444 | dihydroorotase; Reviewed | 100.0 | |
| cd01314 | 447 | D-HYD D-hydantoinases (D-HYD) also called dihydrop | 100.0 | |
| PRK02382 | 443 | dihydroorotase; Provisional | 100.0 | |
| PRK04250 | 398 | dihydroorotase; Provisional | 100.0 | |
| TIGR02033 | 454 | D-hydantoinase D-hydantoinase. This model represen | 100.0 | |
| KOG2584 | 522 | consensus Dihydroorotase and related enzymes [Nucl | 100.0 | |
| PRK00369 | 392 | pyrC dihydroorotase; Provisional | 100.0 | |
| PRK09357 | 423 | pyrC dihydroorotase; Validated | 100.0 | |
| cd01316 | 344 | CAD_DHOase The eukaryotic CAD protein is a trifunc | 100.0 | |
| cd01317 | 374 | DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; | 100.0 | |
| cd01294 | 335 | DHOase Dihydroorotase (DHOase) catalyzes the rever | 100.0 | |
| TIGR00856 | 341 | pyrC_dimer dihydroorotase, homodimeric type. This | 100.0 | |
| PRK09061 | 509 | D-glutamate deacylase; Validated | 100.0 | |
| PRK05451 | 345 | dihydroorotase; Provisional | 100.0 | |
| cd01297 | 415 | D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci | 100.0 | |
| PLN02599 | 364 | dihydroorotase | 100.0 | |
| PRK15446 | 383 | phosphonate metabolism protein PhnM; Provisional | 100.0 | |
| TIGR02318 | 376 | phosphono_phnM phosphonate metabolism protein PhnM | 100.0 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 99.97 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 99.96 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 99.95 | |
| PRK13206 | 573 | ureC urease subunit alpha; Reviewed | 99.95 | |
| cd00375 | 567 | Urease_alpha Urease alpha-subunit; Urease is a nic | 99.95 | |
| PRK13985 | 568 | ureB urease subunit beta; Provisional | 99.95 | |
| PRK06687 | 419 | chlorohydrolase; Validated | 99.95 | |
| PRK13309 | 572 | ureC urease subunit alpha; Reviewed | 99.95 | |
| PRK07228 | 445 | N-ethylammeline chlorohydrolase; Provisional | 99.95 | |
| PRK13308 | 569 | ureC urease subunit alpha; Reviewed | 99.95 | |
| PRK08203 | 451 | hydroxydechloroatrazine ethylaminohydrolase; Revie | 99.94 | |
| COG1574 | 535 | Predicted metal-dependent hydrolase with the TIM-b | 99.94 | |
| PRK13207 | 568 | ureC urease subunit alpha; Reviewed | 99.94 | |
| PRK08204 | 449 | hypothetical protein; Provisional | 99.94 | |
| PRK06151 | 488 | N-ethylammeline chlorohydrolase; Provisional | 99.94 | |
| PRK15493 | 435 | 5-methylthioadenosine/S-adenosylhomocysteine deami | 99.94 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 99.93 | |
| PRK09045 | 443 | N-ethylammeline chlorohydrolase; Provisional | 99.93 | |
| PRK06380 | 418 | metal-dependent hydrolase; Provisional | 99.93 | |
| COG1228 | 406 | HutI Imidazolonepropionase and related amidohydrol | 99.93 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 99.93 | |
| PRK07583 | 438 | cytosine deaminase-like protein; Validated | 99.93 | |
| TIGR01178 | 552 | ade adenine deaminase. The family described by thi | 99.93 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 99.93 | |
| TIGR01975 | 389 | isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i | 99.93 | |
| PRK09237 | 380 | dihydroorotase; Provisional | 99.92 | |
| PRK08393 | 424 | N-ethylammeline chlorohydrolase; Provisional | 99.92 | |
| PRK12393 | 457 | amidohydrolase; Provisional | 99.92 | |
| PRK06038 | 430 | N-ethylammeline chlorohydrolase; Provisional | 99.92 | |
| TIGR03314 | 441 | Se_ssnA putative selenium metabolism protein SsnA. | 99.92 | |
| PRK09229 | 456 | N-formimino-L-glutamate deiminase; Validated | 99.92 | |
| PRK07203 | 442 | putative chlorohydrolase/aminohydrolase; Validated | 99.92 | |
| TIGR01792 | 567 | urease_alph urease, alpha subunit. This model desc | 99.92 | |
| TIGR02022 | 455 | hutF formiminoglutamate deiminase. In some species | 99.91 | |
| PRK09228 | 433 | guanine deaminase; Provisional | 99.91 | |
| TIGR02967 | 401 | guan_deamin guanine deaminase. This model describe | 99.91 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 99.91 | |
| PLN02303 | 837 | urease | 99.91 | |
| PRK07213 | 375 | chlorohydrolase; Provisional | 99.91 | |
| cd01304 | 541 | FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub | 99.9 | |
| PRK09356 | 406 | imidazolonepropionase; Validated | 99.9 | |
| PRK07572 | 426 | cytosine deaminase; Validated | 99.9 | |
| cd01307 | 338 | Met_dep_hydrolase_B Metallo-dependent hydrolases, | 99.9 | |
| cd01293 | 398 | Bact_CD Bacterial cytosine deaminase and related m | 99.9 | |
| PRK09230 | 426 | cytosine deaminase; Provisional | 99.9 | |
| cd01313 | 418 | Met_dep_hydrolase_E Metallo-dependent hydrolases, | 99.9 | |
| cd01312 | 381 | Met_dep_hydrolase_D Metallo-dependent hydrolases, | 99.89 | |
| cd01296 | 371 | Imidazolone-5PH Imidazolonepropionase/imidazolone- | 99.89 | |
| TIGR01224 | 377 | hutI imidazolonepropionase. This enzyme catalyzes | 99.89 | |
| cd01303 | 429 | GDEase Guanine deaminase (GDEase). Guanine deamina | 99.89 | |
| PRK14085 | 382 | imidazolonepropionase; Provisional | 99.88 | |
| TIGR03121 | 556 | one_C_dehyd_A formylmethanofuran dehydrogenase sub | 99.87 | |
| PRK06846 | 410 | putative deaminase; Validated | 99.87 | |
| PRK08418 | 408 | chlorohydrolase; Provisional | 99.87 | |
| PRK10027 | 588 | cryptic adenine deaminase; Provisional | 99.87 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 99.85 | |
| COG3964 | 386 | Predicted amidohydrolase [General function predict | 99.85 | |
| COG1001 | 584 | AdeC Adenine deaminase [Nucleotide transport and m | 99.85 | |
| cd01300 | 479 | YtcJ_like YtcJ_like metal dependent amidohydrolase | 99.84 | |
| COG0402 | 421 | SsnA Cytosine deaminase and related metal-dependen | 99.83 | |
| cd01309 | 359 | Met_dep_hydrolase_C Metallo-dependent hydrolases, | 99.83 | |
| TIGR03583 | 365 | EF_0837 probable amidohydrolase EF_0837/AHA_3915. | 99.82 | |
| cd00854 | 374 | NagA N-acetylglucosamine-6-phosphate deacetylase, | 99.8 | |
| KOG3968 | 439 | consensus Atrazine chlorohydrolase/guanine deamina | 99.78 | |
| PF13147 | 304 | Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2 | 99.77 | |
| COG3653 | 579 | N-acyl-D-aspartate/D-glutamate deacylase [Secondar | 99.76 | |
| COG0418 | 344 | PyrC Dihydroorotase [Nucleotide transport and meta | 99.75 | |
| PF01979 | 333 | Amidohydro_1: Amidohydrolase family; InterPro: IPR | 99.75 | |
| PRK11170 | 382 | nagA N-acetylglucosamine-6-phosphate deacetylase; | 99.75 | |
| TIGR00221 | 380 | nagA N-acetylglucosamine-6-phosphate deacetylase. | 99.74 | |
| COG3454 | 377 | Metal-dependent hydrolase involved in phosphonate | 99.73 | |
| COG1820 | 380 | NagA N-acetylglucosamine-6-phosphate deacetylase [ | 99.71 | |
| COG0804 | 568 | UreC Urea amidohydrolase (urease) alpha subunit [A | 99.71 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 99.67 | |
| PRK06886 | 329 | hypothetical protein; Validated | 99.66 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 99.65 | |
| KOG2902 | 344 | consensus Dihydroorotase [Nucleotide transport and | 99.6 | |
| cd01305 | 263 | archeal_chlorohydrolases Predicted chlorohydrolase | 99.42 | |
| COG1229 | 575 | FwdA Formylmethanofuran dehydrogenase subunit A [E | 99.2 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 99.09 | |
| PF12890 | 142 | DHOase: Dihydro-orotase-like; InterPro: IPR024403 | 99.02 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 99.01 | |
| PRK10812 | 265 | putative DNAse; Provisional | 98.95 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 98.7 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 98.64 | |
| PRK10425 | 258 | DNase TatD; Provisional | 98.64 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 98.61 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 98.6 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 98.45 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 98.44 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 98.31 | |
| KOG3892 | 407 | consensus N-acetyl-glucosamine-6-phosphate deacety | 98.3 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 98.27 | |
| COG1099 | 254 | Predicted metal-dependent hydrolases with the TIM- | 98.23 | |
| PF13594 | 68 | Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1 | 98.2 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 97.97 | |
| COG1735 | 316 | Php Predicted metal-dependent hydrolase with the T | 97.59 | |
| cd01311 | 263 | PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) | 97.49 | |
| PF07908 | 48 | D-aminoacyl_C: D-aminoacylase, C-terminal region; | 97.41 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 96.89 | |
| PF04909 | 273 | Amidohydro_2: Amidohydrolase; InterPro: IPR006992 | 96.78 | |
| COG3618 | 279 | Predicted metal-dependent hydrolase of the TIM-bar | 96.31 | |
| PF00962 | 331 | A_deaminase: Adenosine/AMP deaminase immunodeficie | 96.21 | |
| cd01321 | 345 | ADGF Adenosine deaminase-related growth factors (A | 96.13 | |
| cd00443 | 305 | ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin | 96.11 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 95.67 | |
| COG1816 | 345 | Add Adenosine deaminase [Nucleotide transport and | 94.93 | |
| TIGR01431 | 479 | adm_rel adenosine deaminase-related growth factor. | 93.76 | |
| COG1831 | 285 | Predicted metal-dependent hydrolase (urease superf | 92.02 | |
| KOG1097 | 399 | consensus Adenine deaminase/adenosine deaminase [N | 91.24 | |
| COG4464 | 254 | CapC Capsular polysaccharide biosynthesis protein | 87.48 | |
| PRK00912 | 237 | ribonuclease P protein component 3; Provisional | 85.58 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 83.99 | |
| PRK06361 | 212 | hypothetical protein; Provisional | 83.51 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 83.0 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 80.41 |
| >COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=492.45 Aligned_cols=377 Identities=38% Similarity=0.562 Sum_probs=339.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||.|||+++||.+++|++.+++++|++|||||++||| |+.|..++.+.++.+...++.++.+++.++.+++....
T Consensus 52 ~PG~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~ 130 (430)
T COG0044 52 LPGLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMP-NTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNL 130 (430)
T ss_pred ccCeeEEEEecCCCCcchhhhHHHHHHHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEecccc
Confidence 69999999999999999999999999999999999999999 99999999999999998888889999999999887543
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
... ++.+... +.++|.|+++.. +..+.+.+++.++++++.|.++.+||+++..+...+.+. +..+...+
T Consensus 131 ~~~-~~~~~~~--~~g~~~F~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~----g~~~~~~~ 199 (430)
T COG0044 131 GKL-ELTERGV--EAGFKGFMDDST----GALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNE----GLRAPELG 199 (430)
T ss_pred chh-hhhhhhh--ccceEEEecCCc----CcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhc----Cccchhhc
Confidence 322 2222221 467788887653 357889999999999999999999999998765555443 45667778
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
+..+|..+|..++.+.+++++.+ |.++|++|+|+. +++++++.++..|++++|+++||||+++++++..+++
T Consensus 200 ~~~~p~~aE~~~iar~~~la~~~-------g~~vhi~HiSt~-~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~~~~ 271 (430)
T COG0044 200 LAGRPPIAEASAIARDLELARAT-------GARVHICHISTK-ESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGT 271 (430)
T ss_pred cCCCChHHHHHHHHHHHHHHHHh-------CCcEEEEEcCCH-HHHHHHHHHhhcCCceEEeecchheEccHhHhhccCc
Confidence 89999999999999999999977 899999999999 9999999999999999999999999999988888899
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||||+..++.+||+++.+|.+++++|||+|++..+|. .+|..+|+|++|+|+.++.+++++.+..+|+.+++
T Consensus 272 ~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPht~eeK~---~~f~~ap~G~~glE~~lpl~l~lv~~g~lsl~~~v 348 (430)
T COG0044 272 LAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPHTLEEKR---LPFEEAPSGIPGLETALPLLLTLVKKGRLSLERLV 348 (430)
T ss_pred ceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHhc---cchhhCCCCCccHHHHHHHHHHHHHcCCcCHHHHH
Confidence 999999999999999999999999999999999999998885 35899999999999999999996666779999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||++.+|.|++|++|||+|+|++..|+++.+ +++++.. ||||+|.++.|+|.+|+++|++||++++..
T Consensus 349 ~~~S~nPA~ifgl~~~g~i~~G~~ADl~lvD~~~~~~i~~~-~~~sk~~-~sPf~G~~~~g~v~~Ti~rG~~v~~~~~~~ 426 (430)
T COG0044 349 ELLSTNPARIFGLPPKGAIEEGADADLVLVDPDEEWTIRAE-ELYSKAK-NSPFEGFELKGRVVATILRGKVVYEDGEVI 426 (430)
T ss_pred HHHhhCHHHHhCCCCCCcccCCCccCEEEEcCCCCeEEchh-hhccccC-CCCcCCCEEeeeEEEEEECCEEEEECCcEe
Confidence 99999999999996688899999999999999999999998 9999999 999999999999999999999999999765
Q ss_pred CC
Q 015182 401 PA 402 (411)
Q Consensus 401 ~~ 402 (411)
..
T Consensus 427 ~~ 428 (430)
T COG0044 427 AK 428 (430)
T ss_pred cC
Confidence 43
|
|
| >PLN02795 allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-63 Score=485.89 Aligned_cols=407 Identities=76% Similarity=1.233 Sum_probs=342.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|+++++...++++.+++++++++||||++||+.++.|..+..+.++...+.......+++.++.+.+....
T Consensus 98 ~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 177 (505)
T PLN02795 98 MPGLIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENA 177 (505)
T ss_pred ecCEEecccCcCCCCccchhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccCcch
Confidence 69999999999988777889999999999999999999999445676677778877776666667788877765543333
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
+.++.+.++.+.|+.+||+|+.+.+..+++..+++.+.+++++++++|+++.+|+++.+.+...... ..+..+...+
T Consensus 178 ~~~~~l~~~~~~G~~g~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~---~~~~~~~~~~ 254 (505)
T PLN02795 178 HNASVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDSRL---DADPRSYSTY 254 (505)
T ss_pred hHHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhhh---hcCCcChhHh
Confidence 3456677777789999999987654334456788999999999999999999999998754311100 1223344455
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
..+||..+|..++.+++.+++++++.+..++.++|++|+++..+.+++++.+|++|++|++++|||||+++.+++..+++
T Consensus 255 ~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~ 334 (505)
T PLN02795 255 LKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDT 334 (505)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCC
Confidence 78899999999999999999876544444589999999998425899999999999999999999999999988776788
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||+|+..++++||+++.+|.+++|+|||+|++..+|.....+|+.++.|++|+++.++.+++...+.++++++++
T Consensus 335 ~~k~~PPLR~~~d~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~~~~l~l~~~v 414 (505)
T PLN02795 335 RYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLA 414 (505)
T ss_pred ceEEcCCCCChHHHHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999998888655567999999999999999999988778889999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||++++|+|++|++|||||||++..|+++.+..++++..+|+||.|.++.|+|.+||++|++||++|+++
T Consensus 415 ~~~s~~pA~~~gl~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~~~g~~~ 494 (505)
T PLN02795 415 RWWSERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFLEGKHA 494 (505)
T ss_pred HHHHHHHHHHhCCCCCCccCCCCccCEEEEcCCcceEECcchhhhhcCCCcCCCCCeEEEeEEEEEEECCEEEEECCeEc
Confidence 99999999999997689999999999999999999999876124555523999999999999999999999999999998
Q ss_pred CCCCCccccC
Q 015182 401 PAACGSPILA 410 (411)
Q Consensus 401 ~~~~g~~~~~ 410 (411)
..+.|+++..
T Consensus 495 ~~~~G~~~~~ 504 (505)
T PLN02795 495 KQACGSPILA 504 (505)
T ss_pred CCCCCeEecC
Confidence 6678988764
|
|
| >PRK13404 dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=470.65 Aligned_cols=391 Identities=29% Similarity=0.439 Sum_probs=332.9
Q ss_pred CCceeecccccCCC---CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|++.+ +...++++.+++++++++||||+++++ ++.+.....+.++......++...++++++.+.+.
T Consensus 53 ~PG~ID~H~H~~~~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~~-~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~ 131 (477)
T PRK13404 53 LPGGVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFA-AQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVAD 131 (477)
T ss_pred ecCEEEeEEcCCccccCCccccchHHHHHHHHHcCCccEEEEcc-CCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecC
Confidence 69999999999875 345679999999999999999999998 55566666777877776666777889888866554
Q ss_pred CCccch-HHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchh---hhhhccCcCC
Q 015182 78 ENAYNA-SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER---HVKLEDDTLD 153 (411)
Q Consensus 78 ~~~~~~-~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~---~~~~~~~~~~ 153 (411)
...+.+ .++..+.+.|+.+||+|+++++ +.++++++.+++++|+++|++|.+|+++...++. ...+ .+
T Consensus 132 ~~~~~~~~~v~~l~~~G~~~iKi~~~~~~----~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~----~G 203 (477)
T PRK13404 132 PTEEVLTEELPALIAQGYTSFKVFMTYDD----LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLA----AG 203 (477)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCC----CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH----CC
Confidence 333333 5778888899999999986432 3568899999999999999999999999876541 1122 22
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~ 233 (411)
..+...+...||..+|..++.+++++++++ +.++|++|+|+. .++++++.+|+.|+.+++++|||||+++.+
T Consensus 204 ~~~~~~~~~~rp~~~E~~~v~~~~~la~~~-------g~~~hi~Hvs~~-~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~ 275 (477)
T PRK13404 204 LTAPKYHAISRPMLAEREATHRAIALAELV-------DVPILIVHVSGR-EAAEQIRRARGRGLKIFAETCPQYLFLTAE 275 (477)
T ss_pred CcchhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEEChhhhccCHH
Confidence 344556678899999999999999999977 999999999998 899999999999999999999999999988
Q ss_pred ccCC---CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhh----cc-cCCccccCCCCchhhhHHHHH
Q 015182 234 EIPD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL----LD-EGNFLKAWGGISSLQFVLPVT 305 (411)
Q Consensus 234 ~~~~---~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~----~~-~~~~~~~~~g~~~~~~~~~~~ 305 (411)
++.. .+...+++||+|...++++||+++.+|.+++|+|||+|++..+|. .. ..+|+.++.|++++++.++.+
T Consensus 276 ~~~~~~~~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sDHap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~l 355 (477)
T PRK13404 276 DLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLL 355 (477)
T ss_pred HhcCccccCCceEECCCCCChHHHHHHHHHHhCCCceEEecCCCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHH
Confidence 7754 678899999999999999999999999999999999999865541 00 237888999999999999999
Q ss_pred HHHHH-hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEE
Q 015182 306 WSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 383 (411)
Q Consensus 306 ~~~~~-~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v 383 (411)
++... ..+++++++++++|.|||++||+ +++|+|++|++||||+||++.+|+++.+ .++++.. |+||.|.++.|+|
T Consensus 356 l~~~v~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~ADlvivd~~~~~~v~~~-~~~~~~~-~sp~~g~~~~g~v 433 (477)
T PRK13404 356 FSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNA-DLHHAAD-YTPYEGMRVTGWP 433 (477)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcCCEEEEcCCccEEEchH-HhcccCC-CCcccceEEeeeE
Confidence 98755 44699999999999999999999 7789999999999999999999999987 7788887 9999999999999
Q ss_pred EEEEECCEEEEEcCcccCCC-CCccccC
Q 015182 384 LATISRGNLVYKEGNHAPAA-CGSPILA 410 (411)
Q Consensus 384 ~~ti~~G~~v~~~g~~~~~~-~g~~~~~ 410 (411)
.+||++|++||++|+++..+ .|++++.
T Consensus 434 ~~tiv~G~vv~~~g~~~~~~~~G~~~~~ 461 (477)
T PRK13404 434 VTVLSRGRVVVEDGELVAERGSGQFLAR 461 (477)
T ss_pred EEEEECCEEEEECCEEecCCCceeEecC
Confidence 99999999999999998654 5888763
|
|
| >PRK06189 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-61 Score=467.24 Aligned_cols=391 Identities=41% Similarity=0.713 Sum_probs=339.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||+++||.++.|...+.+.+..+.+.++..+.+++.++.+.++.
T Consensus 53 lPG~ID~H~H~~~~~~~~~~~~~~~~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-- 130 (451)
T PRK06189 53 FPGMIDVHVHFNEPGRTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVPG-- 130 (451)
T ss_pred ecCEEEeeeccCCCCCCCcccHHHHHHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEeccccc--
Confidence 699999999999887778899999999999999999999986666777778888888877777788999887554432
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh---hhhccCcCCcccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRSY 157 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~~ 157 (411)
.++++..+.+.|+.++|+|+++.+..+++..+...+.++++.+++.|.++.+||++++.+... +.. .+..+.
T Consensus 131 -~~~~l~~l~~~Gv~~~k~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~----~g~~~~ 205 (451)
T PRK06189 131 -NLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQ----QGKTDV 205 (451)
T ss_pred -CHHHHHHHHHcCCcEEEEEccccCCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHh----cCCCCh
Confidence 356777778889999999987643334455678899999999999999999999987754422 221 223445
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..++..+|..+|..++.+++.+++++ |.++|++|+|+. +++++++++|..|++++|++||||++++++++..
T Consensus 206 ~~~~~~~P~~~E~~~v~~~l~la~~~-------g~~~hi~HiSt~-~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~ 277 (451)
T PRK06189 206 RDYLESRPVVAELEAVQRALLYAQET-------GCPLHFVHISSG-KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFER 277 (451)
T ss_pred hHccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhC
Confidence 56778899999999999999999976 889999999998 8999999999999999999999999999988766
Q ss_pred CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcCCCH
Q 015182 238 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 316 (411)
Q Consensus 238 ~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~ 316 (411)
.+...+++||+|...++.+||+++++|.+++|+|||+|++...|. ..+|+.+|.|++|+++.++.+++.. .+.++++
T Consensus 278 ~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i~sDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~ 355 (451)
T PRK06189 278 IGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKE--GDDFFLVWGGISGGQSTLLVMLTEGYIERGIPL 355 (451)
T ss_pred cCCceEEeCCCCChhhHHHHHHHHhCCCceEEECCCCCCCHHHcC--cCCcccCCCCceeHHHHHHHHHHHHHhcCCCCH
Confidence 678899999999999999999999999999999999999877664 2468899999999999999998765 4556999
Q ss_pred HHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 317 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 317 ~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+++++++|.|||++||++++|+|++|++|||+|||++.+|.++.+ .++++.. |+||+|.++.|+|.+||++|++||++
T Consensus 356 ~~~~~~~t~npA~~lgl~~~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~tiv~G~~v~~~ 433 (451)
T PRK06189 356 ETIARLLATNPAKRFGLPQKGRLEVGADADFVLVDLDETYTLTKE-DLFYRHK-QSPYEGRTFPGRVVATYLRGQCVYQD 433 (451)
T ss_pred HHHHHHHhhhHHHHhCCCCCCcccCCCcCCEEEEcCCCCEEECHH-HhhhcCC-CCCcCCcEEEeEEEEEEECCEEEEEC
Confidence 999999999999999996689999999999999999989999887 7777777 99999999999999999999999999
Q ss_pred CcccCCCCCccccC
Q 015182 397 GNHAPAACGSPILA 410 (411)
Q Consensus 397 g~~~~~~~g~~~~~ 410 (411)
|+++..+.|+.|+.
T Consensus 434 g~~~~~~~G~~~~~ 447 (451)
T PRK06189 434 GEVFPPPRGQLLRP 447 (451)
T ss_pred CEEccCCCCcEecC
Confidence 99988888999874
|
|
| >PRK07627 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-61 Score=461.35 Aligned_cols=370 Identities=25% Similarity=0.392 Sum_probs=320.2
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecC-CC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP-EN 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (411)
+|||||+|+|+++++...++++.+++++++++|||||++|| ++.|..+..+.++.+....+....+++.++..++. .+
T Consensus 54 lPG~iD~H~H~~~~g~~~~e~~~t~s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 132 (425)
T PRK07627 54 CPGLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPP-DTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLK 132 (425)
T ss_pred eccEEeccccccCCCccccCcHHHHHHHHHhCCeeEEEeCC-CCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCC
Confidence 69999999999999888899999999999999999999999 88777777666666655555445666654544332 23
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++.++.+.|+.+||.+ +.+..+...+.++++++++.|.++.+||++......... ..+..+...
T Consensus 133 ~~~~~~i~~l~~~G~~~fk~~-------~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~----~~g~~~~~~ 201 (425)
T PRK07627 133 GEVLTEMVELTEAGCVGFSQA-------NVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVA----ASGAVASRL 201 (425)
T ss_pred ccCHHHHHHHHhCCEEEEEcC-------CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhCCCc----CCCHhHHHc
Confidence 345777888888899999964 223467888999999999999999999999766443322 223345566
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...||+.+|..++.+++.+++.+ +.++|++|+|+. +++++++.+|++|+++++++|||||+++.+++...+
T Consensus 202 ~~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~~~ 273 (425)
T PRK07627 202 GLSGVPVAAETIALHTIFELMRVT-------GARVHLARLSSA-AGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFD 273 (425)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCCH-HHHHHHHHHHHCCCCeEEEeccchheEeHhHHhccC
Confidence 778899999999999999999977 899999999999 999999999999999999999999999988876678
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||||+.+++++||+++.+|.+++++|||+|++..+|. .+|+.++.|+++++..++.++....+.+++++++
T Consensus 274 ~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDHaP~~~~~k~---~~~~~~~~G~~g~e~~~pl~~~~~~~~~i~~~~~ 350 (425)
T PRK07627 274 SQFRLDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEKL---LPFAEATPGATGLELLLPLTLKWADEAKVPLARA 350 (425)
T ss_pred CceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHcc---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHH
Confidence 8899999999999999999999999999999999999876663 4799999999999999998887777778999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
++++|.|||+++|+ ++|+|++|+.|||++||++.+|+++.+ +++++.. |+||.|.++.++|.+||++|++||++
T Consensus 351 l~~~t~~pA~~lg~-~~G~l~~G~~ADlvv~d~~~~~~v~~~-~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~ 424 (425)
T PRK07627 351 LARITSAPARVLGL-PAGRLAEGAPADLCVFDPDAHWRVEPR-ALKSQGK-NTPFLGYELPGRVRATLVAGQVAFER 424 (425)
T ss_pred HHHHHHHHHHHhCC-CCCcccCCCcCCEEEECCCCcEEEChh-hccccCC-CCCCcCCEeeeEEEEEEECCEEEeec
Confidence 99999999999999 579999999999999999999999988 8888888 99999999999999999999999986
|
|
| >PRK08044 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=464.13 Aligned_cols=389 Identities=38% Similarity=0.679 Sum_probs=337.9
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||++||+.++.|..++.+.++.+.+.++.++.+++.++.+++..
T Consensus 52 ~Pg~iD~h~h~~~~~~~~~e~~~~~~~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~-- 129 (449)
T PRK08044 52 SPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY-- 129 (449)
T ss_pred cCCeeccccccCCCCccccccHHHHHHHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC--
Confidence 599999999999888777899999999999999999999996677888889999988888777888999888776543
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCC----CCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh---hhhccCcCC
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLD 153 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~----~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~ 153 (411)
.+.++..+.+.|+.+||+|+.|.+. .++...++..+.++++++++.|.++.+||++...++.. ..+ .+
T Consensus 130 -~~~ei~~l~~~gv~~fk~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~----~G 204 (449)
T PRK08044 130 -NLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKR----EG 204 (449)
T ss_pred -CHHHHHHHHHcCceEEEEEecccCcccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHh----cC
Confidence 4567777778899999999876321 22334567789999999999999999999998764421 122 22
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~ 233 (411)
......+...||..+|..++.+++.+++++ |.++|++|+++. .++++++.+++.|.++++++|||||+++++
T Consensus 205 ~~~~~~~~~~~P~~~E~~~v~r~~~lA~~~-------g~~vhi~HiSt~-~~~~~i~~ak~~G~~it~e~~~h~L~l~~~ 276 (449)
T PRK08044 205 RVTAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVCHISSP-EGVEEVTRARQEGQDVTCESCPHYFVLDTD 276 (449)
T ss_pred CCChhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEcChhhhcccHH
Confidence 334556678899999999999999999987 889999999998 899999999999999999999999999998
Q ss_pred ccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hc
Q 015182 234 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KY 312 (411)
Q Consensus 234 ~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 312 (411)
++...+...+++||+|...++++||++|.+|.+++|+|||+|++..+|. .+|+.++.|++|++..++.+++... ..
T Consensus 277 ~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~~~~~K~---~~~~~~~~g~~g~e~~l~~~~~~~v~~~ 353 (449)
T PRK08044 277 QFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKA---GNIMEAWGGIAGLQNCMDVMFDEAVQKR 353 (449)
T ss_pred HhhCCCCcEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCCChHHcc---CChhhCCCCceEHHHHHHHHHHHHHHcC
Confidence 8766788899999999999999999999999999999999999877764 4789999999999999998887655 55
Q ss_pred CCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEE
Q 015182 313 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 392 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~ 392 (411)
+++++++++++|.|||++||++++|+|++|++|||+|||++..|+++.+ .++++.. |+||+|++++|+|.+||++|++
T Consensus 354 ~l~~~~~v~~~s~npA~~lgl~~~G~i~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t~~~G~~ 431 (449)
T PRK08044 354 GMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLKNE-DLEYRHK-VSPYVGRTIGARITKTILRGDV 431 (449)
T ss_pred CCCHHHHHHHHHHhHHHHhCCCCCCcCCCCCccCEEEECCCCcEEECHH-HccccCC-CCCCCCCEEeeeEEEEEECCEE
Confidence 6999999999999999999995589999999999999999999999988 8888888 9999999999999999999999
Q ss_pred EEEcCcc-cCCCCCcccc
Q 015182 393 VYKEGNH-APAACGSPIL 409 (411)
Q Consensus 393 v~~~g~~-~~~~~g~~~~ 409 (411)
||++++. ..++.|++|+
T Consensus 432 v~~~~~~~~~~~~G~~~~ 449 (449)
T PRK08044 432 IYDIEQGFPVAPKGQFIL 449 (449)
T ss_pred EEECCccccCCCCcccCC
Confidence 9999884 4667888874
|
|
| >PRK09059 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=459.53 Aligned_cols=369 Identities=24% Similarity=0.326 Sum_probs=323.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-C
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-N 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (411)
+|||||+|+|++.++..+++++.+.+++++++||||+++|| ++.|..++.+.++.+.+.++..+.+++.+++.++.+ +
T Consensus 59 ~PG~ID~HvH~~~~~~~~~e~~~~~s~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 137 (429)
T PRK09059 59 APGLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLA 137 (429)
T ss_pred eccEEecccccCCCCchhhhhHHHHHHHHHhCCcEEEEecc-CCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCC
Confidence 69999999999887777889999999999999999999999 888888888888888877777678999888777653 3
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++.++.+.|+.++|.+ +.+..+...+.++++++++.|+++.+||++.+.+...+.. .+..+...
T Consensus 138 ~~~l~e~~~l~~~Gv~~f~~~-------~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~----~~~~~~~~ 206 (429)
T PRK09059 138 GEEMTEFGLLRAAGAVAFTDG-------RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMN----EGLFASWL 206 (429)
T ss_pred CcchHHHHHHHhcCcEEEecC-------CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcC----CcHHHHHc
Confidence 445777878878888887631 2234466779899999999999999999998865533322 22334556
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+..+||..+|..++.+++.+++.+ +.++|++|+|+. +++++++.+|++|++++|++|||||+++.+++..++
T Consensus 207 ~~~~rP~~aE~~av~r~~~la~~~-------~~~~hi~hvs~~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~ 278 (429)
T PRK09059 207 GLSGIPREAEVIPLERDLRLAALT-------RGRYHAAQISCA-ESAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYR 278 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEecCCH-HHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhccC
Confidence 678899999999999999999876 899999999998 899999999999999999999999999988876678
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|+.+++.+||+++.+|.+++++|||+|++..+|. .+|+.++.|++|+++.++.++..+.+.+++++++
T Consensus 279 ~~~kvnPPLR~~~d~~~L~~~l~~g~id~i~sDh~p~~~~~K~---~~~~~~~~G~~gle~~l~~~~~~v~~~~l~l~~~ 355 (429)
T PRK09059 279 TFFKLSPPLRTEDDRVAMVEAVASGTIDIIVSSHDPQDVDTKR---LPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRL 355 (429)
T ss_pred CccEEcCCCCCHHHHHHHHHHHHcCCCcEEEeCCCCCCHHHCc---CChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHH
Confidence 8899999999999999999999999999999999999987774 3799999999999999999987666667999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
++++|.||||+||++ +|+|++|++||||+||++..|+++.+ .++++.. |+||+|++++|+|.+||++|++||+
T Consensus 356 ~~~~s~nPA~~~gl~-~G~l~~G~~ADlvl~d~~~~~~v~~~-~~~s~~~-~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 356 IEALSTRPAEIFGLP-AGTLKPGAPADIIVIDLDEPWVVDPE-DLKSRSK-NTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred HHHHhHHHHHHhCCC-cCcccCCCcCCEEEECCCCCEEECcc-cCccCCC-CCCCCCCEEeeEEEEEEECCEEEee
Confidence 999999999999995 69999999999999999999999999 8899988 9999999999999999999999985
|
|
| >PRK07369 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=457.37 Aligned_cols=361 Identities=28% Similarity=0.398 Sum_probs=320.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC-
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN- 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (411)
+|||||+|+|++.++..+++++.+++++|+++||||+++|| |+.|..++.+.++.+.+.++..+.+++.++..++...
T Consensus 56 lPG~ID~H~H~~~~~~~~~e~~~s~~~aa~~GGvTtv~~~p-n~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 134 (418)
T PRK07369 56 GPGLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQ 134 (418)
T ss_pred ecCEEecccccCCCCcCCCccHHHHHHHHHhCCceEEEECC-CCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCC
Confidence 69999999999999888899999999999999999999999 8889889999999888887777889999988776543
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
...++++.++.+.|+.+||.+ ++..+...+.++++++++.|.++.+|+++...+...+.+ .+..+...
T Consensus 135 ~~~~~ei~~l~~~Gv~~f~~~--------~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~----~g~~~~~~ 202 (418)
T PRK07369 135 GKQLTELAELAAAGVVGFTDG--------QPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGVMR----EGLLALRL 202 (418)
T ss_pred CccHhhHHHHHHCCCEEEECC--------CcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcCccc----CChhHHHh
Confidence 235677888888899998832 234567789999999999999999999998876544432 33445666
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...||..+|..++.+++++++.+ +.++|++|+|+. +++++++.+|++|++++|++|||||+++.+++..++
T Consensus 203 ~~~~~p~~aE~~av~r~~~la~~~-------~~~~hi~HvSs~-~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~ 274 (418)
T PRK07369 203 GLPGDPASAETTALAALLELVAAI-------GTPVHLMRISTA-RSVELIAQAKARGLPITASTTWMHLLLDTEALASYD 274 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhccC
Confidence 778999999999999999999977 899999999999 999999999999999999999999999998876677
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQ 318 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~ 318 (411)
...+++||||+..++++||+++.+|.+++|+|||+|++..+|. .+|+.+|+|++|++..++.+++... ..++++++
T Consensus 275 ~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~SDHaP~~~~~K~---~~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~ 351 (418)
T PRK07369 275 PNLRLDPPLGNPSDRQALIEGVRTGVIDAIAIDHAPYTYEEKT---VAFAEAPPGAIGLELALPLLWQNLVETGELSALQ 351 (418)
T ss_pred CCcEECCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCCHHHcc---CCHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHH
Confidence 7899999999999999999999999999999999999988774 3799999999999999999987655 45699999
Q ss_pred HHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEE
Q 015182 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 388 (411)
Q Consensus 319 al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~ 388 (411)
+++++|.|||++||++ .|+|++|++|||+++|++..|+++.+ .++++.. |+||+|++++|+|.+||+
T Consensus 352 ~v~~~s~nPA~~lgl~-~G~i~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t~~ 418 (418)
T PRK07369 352 LWQALSTNPARCLGQE-PPSLAPGQPAELILFDPQKTWTVSAQ-TLHSLSR-NTPWLGQTLKGRVLQTWV 418 (418)
T ss_pred HHHHHHHhHHHHhCCC-cCcccCCCcCCEEEEcCCCCEEECcc-cccCCCC-CCCCCCCEeeeEEEEEEC
Confidence 9999999999999996 59999999999999999999999999 8999988 999999999999999985
|
|
| >PRK08417 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=453.64 Aligned_cols=355 Identities=25% Similarity=0.303 Sum_probs=306.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++.++.+ ++++.+++++|+++|||||+||| ++.|..++.+.++.+.+..+. ...+++.. .+.
T Consensus 29 lPG~ID~HvH~~~~~~~-~e~~~t~s~aA~aGGvTtv~dmp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 102 (386)
T PRK08417 29 LPALVDLNVSLKNDSLS-SKNLKSLENECLKGGVGSIVLYP-DSTPAIDNEIALELINSAQRELPMQIFPSIR---ALD- 102 (386)
T ss_pred ccCeeEEeeeeCCCCcC-hhhHHHHHHHHHcCCcEEEEeCC-CCCCCCCCHHHHHHHHHHhhccCCcEEEEEE---EEC-
Confidence 79999999999988765 58999999999999999999999 888888888888877665554 23444422 232
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
..+.+.++..+.+.|+.+||.+. ..+++.+.+++++++++|++|.+||++...+...... .+..++.
T Consensus 103 ~~~~~~~i~~l~~~Gv~~~k~~~---------~~~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~----~g~~~~~ 169 (386)
T PRK08417 103 EDGKLSNIATLLKKGAKALELSS---------DLDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMN----DGELSFE 169 (386)
T ss_pred CCccHHHHHHHHHCCCEEEECCC---------CCCHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHh----cChhhHH
Confidence 23346778888888999988631 3578899999999999999999999998765544332 3345667
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCC
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~ 238 (411)
.++..||..+|..++.+++++++++ +.++|++|+|+. +++++++.+|++|++++|++|||||+++.+++..+
T Consensus 170 ~~~~~rp~~aE~~~v~~~~~la~~~-------~~~lhi~hvS~~-~~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~ 241 (386)
T PRK08417 170 LGLPGIPSIAETKEVAKMKELAKFY-------KNKVLFDTLALP-RSLELLDKFKSEGEKLLKEVSIHHLILDDSACENF 241 (386)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCc
Confidence 7788999999999999999999987 899999999999 99999999999999999999999999999887667
Q ss_pred CcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-CCCHH
Q 015182 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLE 317 (411)
Q Consensus 239 ~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~ 317 (411)
+...+++||||+.+++++||+++.+|.+++|+|||+|++..+|. .+|+.++.|++|+++.++.+++.+.+. +++++
T Consensus 242 ~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~---~~~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~ 318 (386)
T PRK08417 242 NTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKD---LAFDEAAFGIDSICEYFSLCYTYLVKEGIITWS 318 (386)
T ss_pred CcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHcc---CCHhHCCCCchHHHHHHHHHHHHHHhcCCCCHH
Confidence 78899999999999999999999999999999999999987774 378999999999999999999776644 59999
Q ss_pred HHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 318 QLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 318 ~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
++++++|.|||++||++. |+|++|++|||++||++.+|.++.. |+||.|..+.++|..||++|++||+
T Consensus 319 ~~~~~~t~~pA~~lgl~~-G~l~~G~~ADlvi~d~~~~~~~~~~---------~~p~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 319 ELSRFTSYNPAQFLGLNS-GEIEVGKEADLVLFDPNESTIIDDN---------FSLYSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred HHHHHHHHHHHHHhCCCC-CccCCCCcCCEEEEcCCCCeEeCCC---------CCCccCCEEeccEEEEEECCEEEeC
Confidence 999999999999999964 9999999999999999988887654 8999999999999999999999984
|
|
| >PRK01211 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=453.80 Aligned_cols=360 Identities=26% Similarity=0.370 Sum_probs=304.5
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||+|+|+++|+.+++|++.+++++|++||||||+||| |+.|..++.+.+..+.+.++..+.+++.++.+.+..+
T Consensus 45 lPG~ID~HvH~r~pg~~~ked~~s~s~AAaaGGvTtv~dmP-nt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~- 122 (409)
T PRK01211 45 LPAATDIHVHFRTPGETEKEDFSTGTLSAIFGGTTFIMDMP-NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNN- 122 (409)
T ss_pred cCCeEEeeeccCCCCCcccCcHHHHHHHHHcCCcEEEEECC-CCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCch-
Confidence 79999999999999999999999999999999999999999 8888888999999998888777899999987654322
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
. ++.+.|+.++|+|+++... .+. .... ..++.+++.|.++.+||++...+...... ......
T Consensus 123 ~------~~~~~g~~~~k~f~~~~~~~~~~-~~~~----~~l~~~~~~g~~v~~H~E~~~l~~~~~~~------~~~~~~ 185 (409)
T PRK01211 123 A------LILDERSIGLKVYMGGTTNTNGT-DIEG----GEIKKINEANIPVFFHAELSECLRKHQFE------SKNLRD 185 (409)
T ss_pred h------hHHhccCcEEEEEcCCCcCCCcc-ccCH----HHHHHHHccCCEEEEeccChHHhhhhhhC------cchHhh
Confidence 1 2334599999999864210 111 1222 34466678999999999998775543221 112345
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...||..+|..++.+++.++.+ ++|++|+++. +++ .+|+||+|||||+++.++ .++
T Consensus 186 ~~~~rP~~aE~~ai~~~~~la~~----------~~hi~HvSt~-~~~----------~~vt~Ev~phhL~l~~~~--~~~ 242 (409)
T PRK01211 186 HDLARPIECEIKAVKYVKNLDLK----------TKIIAHVSSI-DVI----------GRFLREVTPHHLLLNDDM--PLG 242 (409)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCC----------CcEEEEecCh-hhc----------CceEEEecHHHHcccccc--ccC
Confidence 67889999999999999988752 5999999997 555 169999999999999876 267
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||||+.+++++||++|.+|.+++|+|||+|+...+| .+|+.+|+|++|+++.++.+++.+.+.++|++++
T Consensus 243 ~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~~eK----~~~~~a~~G~~gle~~lpl~~~~v~~~~isl~~~ 318 (409)
T PRK01211 243 SYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEEDK----QEFEYAKSGIIGVETRVPLFLALVKKKILPLDVL 318 (409)
T ss_pred CceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCChhHh----CCHhhCCCCCCcHHHHHHHHHHHHHcCCCCHHHH
Confidence 889999999999999999999999999999999999987665 3689999999999999999997655667999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||++||++ +|+|++|++|||||||++..|+++.+ .++++.. |+||+|.++. +|..||++|++||++|++
T Consensus 319 v~~~s~nPAki~gl~-kG~l~~G~~ADlvi~D~~~~~~v~~~-~~~s~~~-~spf~G~~~~-~v~~tiv~G~~v~~~~~~ 394 (409)
T PRK01211 319 YKTAIERPASLFGIK-KGKIEEGYDADFMAFDFTNIKKINDK-RLHSKCP-VSPFNGFDAI-FPSHVIMRGEVVIDNYEL 394 (409)
T ss_pred HHHHHHHHHHHhCCC-CCcccCCCcCCEEEEcCCCeEEEChH-HhhccCC-CCCCCCCEec-cEEEEEECCEEEEECCEE
Confidence 999999999999995 79999999999999999999999988 8888888 9999999988 999999999999999999
Q ss_pred cCCCCCccccC
Q 015182 400 APAACGSPILA 410 (411)
Q Consensus 400 ~~~~~g~~~~~ 410 (411)
...+.|++++.
T Consensus 395 ~~~~~G~~~~~ 405 (409)
T PRK01211 395 ISERTGKFVPK 405 (409)
T ss_pred ccccCceEecc
Confidence 87678998864
|
|
| >cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-60 Score=446.12 Aligned_cols=357 Identities=34% Similarity=0.470 Sum_probs=311.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||+|+|+++|+.+++|++.+++++|+++|||||+||| |+.|..++.+.++.+.+.++..+.+++.++.+++..
T Consensus 5 lPG~iD~HvH~r~pg~~~~ed~~s~t~aA~~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~~~~-- 81 (361)
T cd01318 5 LPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGVTGS-- 81 (361)
T ss_pred ecCeeEeeecCCCCCCCccCcHHHHHHHHHcCCCEEEEECC-CCCCCCCcHHHHHHHHHHhccCceeEEEEEEeecCh--
Confidence 69999999999999999999999999999999999999999 888999999999998888777778999998776542
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.++.+.|+.++|.|+.+.. ... ..+...|.++++++. +++.+||++.+.+.....+.+ ....+
T Consensus 82 ---~~l~~~~~~~~~g~k~f~~~~~-~~~-~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~------~~~~~ 147 (361)
T cd01318 82 ---EDLEELDKAPPAGYKIFMGDST-GDL-LDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELK------GESAH 147 (361)
T ss_pred ---hhHHHHHHhhCcEEEEEEecCC-CCc-CCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhh------hccCC
Confidence 2466666678899999986432 112 257888999998875 789999999877554433221 11245
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
..+||..+|..++.+++.+++.+ +.++|++|+++. +++++++.+| .+++|++|||||+++.+++..++.
T Consensus 148 ~~~~P~~aE~~av~r~~~la~~~-------~~~~hi~Hvs~~-~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~~~~~ 216 (361)
T cd01318 148 PRIRDAEAAAVATARALKLARRH-------GARLHICHVSTP-EELKLIKKAK---PGVTVEVTPHHLFLDVEDYDRLGT 216 (361)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHhC---CCeEEEeCHHHhhcCHHHHhcCCC
Confidence 67899999999999999999876 899999999999 8999999886 579999999999999887766788
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||+|+..++++||+++++|.+++++|||+|+...+|. .+|+.++.|+++++..++.++.++.+.++++++++
T Consensus 217 ~~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~---~~~~~a~~G~~g~e~~l~~~~~~v~~~~l~l~~a~ 293 (361)
T cd01318 217 LGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKR---KGYPAAPSGIPGVETALPLMLTLVNKGILSLSRVV 293 (361)
T ss_pred eEEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHcc---CChhhCCCCCccHHHHHHHHHHHHHcCCCCHHHHH
Confidence 999999999999999999999999999999999999887774 46889999999999988888876666789999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
+++|.|||+++|++++|+|++|++|||+|||++..|+++.+ .++++.. |+||+|++++|+|.+||++|
T Consensus 294 ~~~t~nPA~~lgl~~~G~i~~G~~ADlvv~d~~~~~~v~~~-~~~s~~~-~tp~~G~~l~G~v~~t~~~G 361 (361)
T cd01318 294 RLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERTIRAE-EFHSKAG-WTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred HHHhHHHHHHhCCCCCCccCCCCcCCEEEEeCCCCEEECHH-HccccCC-CCCCCCCEEeeEEEEEEeCc
Confidence 99999999999996589999999999999999999999988 8888888 99999999999999999998
|
This group contains the archeal members of the DHOase family. |
| >TIGR03178 allantoinase allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=455.81 Aligned_cols=390 Identities=48% Similarity=0.814 Sum_probs=337.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|+++++...++++.+++++++++||||++||+.++.|..+..+.++...+.......+++.++.+.++
T Consensus 50 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--- 126 (443)
T TIGR03178 50 FPGVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLVP--- 126 (443)
T ss_pred eccEeccccccCCCCccccchHHHHHHHHHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccCC---
Confidence 69999999999988777789999999999999999999998555676677788888877776667889888765443
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh---hhhccCcCCcccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRSY 157 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~~ 157 (411)
+.++++.++.+.|+.++|+|+++.+..+++..+.+++.++++.++++|+++.+|+++....... +. ..+..++
T Consensus 127 ~~~~~i~~~~~~G~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~----~~g~~~~ 202 (443)
T TIGR03178 127 YNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAP----PQGGVGA 202 (443)
T ss_pred CCHHHHHHHHHCCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHH----hcCCCCh
Confidence 3456677778889999999987643333456788999999999999999999999987665432 22 2334556
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
.++...||..+|..++.+++++++++ +.++|++|+++. +.+++++.++++|++++++++|||++++.+++..
T Consensus 203 ~~~~~~~p~~ae~~~~~~~~~la~~~-------g~~vhi~Hiss~-~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~ 274 (443)
T TIGR03178 203 DAYLASRPVFAEVEAIRRTLALAKVT-------GCRVHVVHLSSA-EAVELITEAKQEGLDVTVETCPHYLTLTAEEVPD 274 (443)
T ss_pred hHhcCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEECccceEecHHHhhC
Confidence 67778899999999999999999876 899999999998 8999999999999999999999999999887766
Q ss_pred CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCH
Q 015182 238 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTL 316 (411)
Q Consensus 238 ~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~ 316 (411)
.+...+++||+|...++.+||+++++|.+++|+|||+|+....|. ..+|+.++.|+++++..++.+++... +.++++
T Consensus 275 ~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~ 352 (443)
T TIGR03178 275 GGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPL 352 (443)
T ss_pred cCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCCCCCCChHHcC--cCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCH
Confidence 778899999999999999999999999999999999999876663 24788999999999999998887654 567999
Q ss_pred HHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 317 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 317 ~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+++++++|.|||+++|++++|+|++|++|||||||++.+|.++++ .+.++.. |+||.|.++.++|.+||++|++||++
T Consensus 353 ~~~~~~~t~~pA~~~g~~~~G~l~~G~~Ad~vi~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~ 430 (443)
T TIGR03178 353 EDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPD-DLYYRHK-VSPYVGRTIGGRVRATYLRGQCIYDD 430 (443)
T ss_pred HHHHHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCcEEEcHH-HhhhcCC-CCCcCCcEEeeEEEEEEECCEEEEEC
Confidence 999999999999999996679999999999999999889999887 7777777 99999999999999999999999999
Q ss_pred CcccCCCCCcccc
Q 015182 397 GNHAPAACGSPIL 409 (411)
Q Consensus 397 g~~~~~~~g~~~~ 409 (411)
|+++..+.|++|.
T Consensus 431 g~~~~~~~g~~~~ 443 (443)
T TIGR03178 431 EQFIGAPKGQLLL 443 (443)
T ss_pred CeeccCCCCcccC
Confidence 9999777898874
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. |
| >PRK07575 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=446.94 Aligned_cols=382 Identities=27% Similarity=0.400 Sum_probs=320.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++..++|++++++++++++||||++||+ ++.|..++.+.+..+.+.+...+.++++++.+.++
T Consensus 55 ~PG~ID~H~H~~~~~~~~~e~~~~~~~aa~~gGvTt~~dmp-~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~--- 130 (438)
T PRK07575 55 LPGVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP-NTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATP--- 130 (438)
T ss_pred cccEEEeeeccCCCCCcCcchHHHHHHHHHhCCEEEEEECC-CCCCCCCcHHHHHHHHHHhccCcEEEEEEEccccc---
Confidence 69999999999988878899999999999999999999999 78888888999988887777777899999876653
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
+.+.++..+ .++.++|.|+.+.. .+....+...+++++ .+.+.++.+|+++...+...... ..+......+
T Consensus 131 ~~l~~l~~~--~~~~g~~~f~~~~~-~~~~~~~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~~~---~~g~~~~~~~ 201 (438)
T PRK07575 131 DNLPELLTA--NPTCGIKIFMGSSH-GPLLVDEEAALERIF---AEGTRLIAVHAEDQARIRARRAE---FAGISDPADH 201 (438)
T ss_pred cCHHHHHHh--hCCeEEEEEEeeCC-CCcccCcHHHHHHHH---HhCCCEEEEeCcChHHHHhhhHh---hccCcCcccc
Confidence 233344322 36788999874321 111122344455543 35799999999987753321110 1223344456
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
...+|..+|..++.+++++++++ +.++|++|+|+. ++++++++++ +..++++++|||++++++++...+.
T Consensus 202 ~~~~p~~aE~~av~~~~~la~~~-------g~~lhi~HiSt~-~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~~~~ 271 (438)
T PRK07575 202 SQIQDEEAALLATRLALKLSKKY-------QRRLHILHLSTA-IEAELLRQDK--PSWVTAEVTPQHLLLNTDAYERIGT 271 (438)
T ss_pred cccCcHHHHHHHHHHHHHHHHHH-------CCCEEEEECCCH-HHHHHHHHhc--CCCEEEEEchhhheeCHHHHhCCCc
Confidence 67899999999999999999977 899999999998 8999998876 4679999999999999988766778
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||+|..+++.+||+++++|++++|+|||+|++..+|. .+|+.+|.|++++++.++.+++.+.+.++++++++
T Consensus 272 ~~k~~PPLR~~~d~~~L~~~l~~G~id~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~l~~l~~~~~~~~lsl~~~~ 348 (438)
T PRK07575 272 LAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKA---QPYPNSPSGMPGVETSLPLMLTAAMRGKCTVAQVV 348 (438)
T ss_pred eEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHcc---CCcccCCCCcccHHHHHHHHHHHHhcCCCCHHHHH
Confidence 899999999999999999999999999999999999987774 47889999999999999999988776679999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||++++|+|++|++|||||||++.+|.++.+ .++++.. |+||+|.++.|+|.+||++|++||++|+++
T Consensus 349 ~~~s~npAk~lgl~~~G~L~~G~~ADlvi~D~~~~~~v~~~-~~~s~~~-~sp~~g~~~~G~v~~tiv~G~~v~~~g~~~ 426 (438)
T PRK07575 349 RWMSTAVARAYGIPNKGRIAPGYDADLVLVDLNTYRPVRRE-ELLTKCG-WSPFEGWNLTGWPVTTIVGGQIVFDRGQVN 426 (438)
T ss_pred HHHhhhHHHHcCCCCCCccCCCCcCCEEEEcCCCCEEEchH-HccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEc
Confidence 99999999999996579999999999999999999999887 8888888 999999999999999999999999999998
Q ss_pred CCCCCccccC
Q 015182 401 PAACGSPILA 410 (411)
Q Consensus 401 ~~~~g~~~~~ 410 (411)
..+.|+.|++
T Consensus 427 ~~~~G~~~~~ 436 (438)
T PRK07575 427 TEVRGQALTF 436 (438)
T ss_pred cCCCceEeec
Confidence 8788998874
|
|
| >PLN02942 dihydropyrimidinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=451.23 Aligned_cols=393 Identities=26% Similarity=0.351 Sum_probs=322.7
Q ss_pred CCceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++++ +..++|++++++++++++||||++||. ... .....+.++.+.+.+. +..+++.++.+.+..
T Consensus 56 ~PG~ID~H~H~~~~~~~~~~~ed~~s~s~aAl~gGvTTv~D~~-~~~-~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 132 (486)
T PLN02942 56 MPGGIDPHTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFV-IPV-NGNLLAGYEAYEKKAE-KSCMDYGFHMAITKW 132 (486)
T ss_pred ecCEeeeeeccCcccCCCcccchHHHHHHHHHcCCCeEEEeCC-CCC-CCCHHHHHHHHHHHHh-hcCCCEEEEEEecCC
Confidence 69999999999987 356789999999999999999999996 322 1122566666655554 456888877665443
Q ss_pred CccchHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 79 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 79 ~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
....++++.++. +.|+.++|+|+.+.+ ....+++.+.++++.++++|.++++|+++.........+.. ..+....
T Consensus 133 ~~~~~~e~~~l~~~~gv~~~k~~~~~~~---~~~~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~-~~G~~~~ 208 (486)
T PLN02942 133 DDTVSRDMETLVKEKGINSFKFFMAYKG---SLMVTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMI-ELGITGP 208 (486)
T ss_pred cHhHHHHHHHHHHhCCCceEEEEEecCC---CCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCCh
Confidence 322345666664 358889999987642 23457899999999999999999999988765543332210 1112233
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..+...||..+|..++.+++.++..+ +.++|++|+++. ++++.|+.+|++|+.|+++++||||+++++++..
T Consensus 209 ~~~~~~rP~~~E~~av~~~~~la~~~-------g~~~~i~H~s~~-~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~ 280 (486)
T PLN02942 209 EGHALSRPPLLEGEATARAIRLAKFV-------NTPLYVVHVMSI-DAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWD 280 (486)
T ss_pred hhhhccCCchHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCcEEEEECchhheeCHHHhcC
Confidence 34567799999999999999998876 899999999998 8889999999999999999999999999877643
Q ss_pred ----CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-
Q 015182 238 ----GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY- 312 (411)
Q Consensus 238 ----~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 312 (411)
++...+++||+|+..+++.||+++++|+++++||||+|++...|..+.++|+.++.|+++++..++.+++.....
T Consensus 281 ~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~ 360 (486)
T PLN02942 281 PDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESG 360 (486)
T ss_pred cccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCCChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcC
Confidence 577889999999999999999999999999999999999988876544578999999999999999888765544
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
.++++++++++|.|||++||+ +++|+|++|++||||++|++.+|.++.+ .++++.. |+||+|.+++|+|..||++|+
T Consensus 361 ~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~~~~v~~~-~~~s~~~-~~py~g~~l~g~v~~tiv~G~ 438 (486)
T PLN02942 361 QISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAK-THHSRID-TNVYEGRRGKGKVEVTISQGR 438 (486)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCccEEEcHH-HccccCC-CCCccCcEeeeeEEEEEECCE
Confidence 499999999999999999999 6789999999999999999999999987 6777777 999999999999999999999
Q ss_pred EEEEcCcccCC-CCCccccC
Q 015182 392 LVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 392 ~v~~~g~~~~~-~~g~~~~~ 410 (411)
+||++|+++.. ..|++|+.
T Consensus 439 ~v~~~g~~~~~~~~G~~~~~ 458 (486)
T PLN02942 439 VVWENGELKVVRGSGRYIEM 458 (486)
T ss_pred EEEECCEEeccCCCceEecC
Confidence 99999998754 35888763
|
|
| >cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=445.62 Aligned_cols=395 Identities=54% Similarity=0.920 Sum_probs=336.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||++||+.++.|.....+.++.+.+..+....+++.++.+.++.
T Consensus 51 ~PG~ID~H~H~~~~~~~~~e~~~~~s~aal~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-- 128 (447)
T cd01315 51 MPGLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPG-- 128 (447)
T ss_pred eccEeeceeccCCCCccccccHHHHHHHHHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCC--
Confidence 699999999999877778899999999999999999999985555666777888888777666678888877654433
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
.++++.++.+.|+.++|+|+++....+++..+.+++.++++.++++|+++++|+++...+.....+.. ..+..++.++
T Consensus 129 -~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~-~~g~~~~~~~ 206 (447)
T cd01315 129 -NLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAK-AKGKRDYRDY 206 (447)
T ss_pred -CHHHHHHHHHcCCcEEEEEecccCCCCcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHh-hcCCCChHHh
Confidence 45667777888999999998764333444568899999999999999999999999776554332211 1223455667
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
+..+|..+|..++.++++++++. |.++|++|+++. .++++++.++.+|.+++++++|||++++.+++...+.
T Consensus 207 ~~~~p~~~e~~~~~~~~~la~~~-------g~~ihi~h~s~~-~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~ 278 (447)
T cd01315 207 LASRPVFTEVEAIQRILLLAKET-------GCRLHIVHLSSA-EAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGT 278 (447)
T ss_pred hccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCC
Confidence 78899999999999999999976 899999999998 8999999999999999999999999999888777788
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQL 319 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~a 319 (411)
..++.||+|...++.+||+++++|.+++++|||+|+....|..+..+|+.++.|+++.+..++.+++... ..+++++++
T Consensus 279 ~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 358 (447)
T cd01315 279 EFKCAPPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDI 358 (447)
T ss_pred ceEECCCCCChHHHHHHHHHHhCCceeEEeCCCCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHH
Confidence 8999999999999999999999999999999999998777753335788889999999998988886655 457999999
Q ss_pred HHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCc
Q 015182 320 ASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398 (411)
Q Consensus 320 l~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~ 398 (411)
++++|.|||+++|+ +++|+|++|++|||||+|++..|.++.+ .+.++.. |+||.|.++.++|.+||++|++||++|+
T Consensus 359 ~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~ti~~G~~v~~~~~ 436 (447)
T cd01315 359 ARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAE-DLYYKNK-ISPYVGRTLKGRVHATILRGTVVYQDGE 436 (447)
T ss_pred HHHHhHHHHHHhCCCCCCccccCCCCCCEEEEcCCCCEEEcHH-HccccCC-CCCccCeEEeeeEEEEEECCEEEEECCe
Confidence 99999999999999 4789999999999999999988888877 6777777 9999999999999999999999999999
Q ss_pred ccCCCCCcccc
Q 015182 399 HAPAACGSPIL 409 (411)
Q Consensus 399 ~~~~~~g~~~~ 409 (411)
++..+.|++|+
T Consensus 437 ~~~~~~G~~~~ 447 (447)
T cd01315 437 VVGEPLGQLLL 447 (447)
T ss_pred EccCCCceEeC
Confidence 98777899875
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. |
| >TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=436.86 Aligned_cols=373 Identities=35% Similarity=0.519 Sum_probs=322.9
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+.++.++++||||+++++ ++.|..+..+.++.+.+..+....+++.++.+++....
T Consensus 38 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~t~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~ 116 (411)
T TIGR00857 38 LPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP-NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQ 116 (411)
T ss_pred ecCEEEcccCCCCCCCccHhHHHHHHHHHHhCCeEEEEEec-CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCc
Confidence 69999999999876666788899999999999999999999 77777777888888887777777899998887765432
Q ss_pred -cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 81 -YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 81 -~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
+.+.++.++.+.|+.+ |+|..+ +.+..+++.+.+++++++++|+++.+|+++++.+...+... +......
T Consensus 117 ~~~l~e~~~l~~~Gv~g-~~f~~~----~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~----g~~~~~~ 187 (411)
T TIGR00857 117 GKELTEAYELKEAGAVG-RMFTDD----GSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHE----GPSAAQL 187 (411)
T ss_pred cccHHHHHHHHHCCcEE-EEEEeC----CcccCCHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcC----CcccHhh
Confidence 2456677777789998 333222 22346789999999999999999999999987655443322 2234566
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
++..||+.+|..++.+++++++.+ ++++|++|+|+. +++++++.+|++|++++|++|||||+++.+++...+
T Consensus 188 ~~~~~p~~aE~~ai~~~~~la~~~-------~~~~~i~Hvs~~-~~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~ 259 (411)
T TIGR00857 188 GLPARPPEAEEVAVARLLELAKHA-------GCPVHICHISTK-ESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLD 259 (411)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHcCCcEEEeechhhheecHHHHhCCC
Confidence 788999999999999999999876 899999999998 899999999999999999999999999998876678
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|+..++.+||+++.+|.+++|+|||+|+....|. .+|+.++.|+++++..++.+++.+.+.+++++++
T Consensus 260 ~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~ 336 (411)
T TIGR00857 260 GNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKT---KEFAAAPPGIPGLETALPLLLQLLVKGLISLKDL 336 (411)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHcc---CCHhhCCCCceeHHHHHHHHHHHHHhCCCCHHHH
Confidence 8899999999999999999999999999999999999876664 3688999999999999999988777667999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
++++|.|||+++|++++|+|++|+.|||++||.+.+|.++.+ ++.++.. |+||+|.++.|+|..||++|++||+|
T Consensus 337 ~~~~t~~pa~~~g~~~~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 337 IRMLSINPARIFGLPDKGTLEEGNPADITVFDLKKEWTINAE-TFYSKAK-NTPFEGMSLKGKPIATILRGKVVYED 411 (411)
T ss_pred HHHHhHHHHHHhCCCCCCccCCCCcCCEEEEcCCCCEEEchH-HCccCCC-CCCcCCCEEEeEEEEEEECCEEEecC
Confidence 999999999999996569999999999999999999999887 7888887 99999999999999999999999975
|
All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. |
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-58 Score=428.53 Aligned_cols=333 Identities=37% Similarity=0.601 Sum_probs=294.3
Q ss_pred CCceeecccccCCCCCC-ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC
Q 015182 1 MPGLIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~-~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (411)
+||+||+|+|+++|+.. ++|++.+++++|+++|||||+||| |+.|..++.+.++.+.+.++.++.++++++...+..
T Consensus 4 lPG~iD~HvH~r~pg~~~~~e~~~t~t~aA~~GG~Ttv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~- 81 (337)
T cd01302 4 LPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIGPG- 81 (337)
T ss_pred cCCeeEeeeccCCCCCCCchhHHHHHHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEeccCc-
Confidence 79999999999999887 899999999999999999999999 888888889999988888777778999998776553
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
+.++++.++.+.|+.++|+|+.+... ..+..+++++.++++.+++.|+++.+|++.
T Consensus 82 -~~~~el~~l~~~Gv~g~K~f~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~v~~H~Er---------------------- 137 (337)
T cd01302 82 -DVTDELKKLFDAGINSLKVFMNYYFG-ELFDVDDGTLMRTFLEIASRGGPVMVHAER---------------------- 137 (337)
T ss_pred -cCHHHHHHHHHcCCcEEEEEEeccCC-CccccCHHHHHHHHHHHHhcCCeEEEeHHH----------------------
Confidence 25667888888899999999865421 112568899999999999999999999881
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
++.+++++ +.++|++|+++. +++++++.+|++|+++++++||||++++.+++...+
T Consensus 138 ----------------~~~la~~~-------g~~l~i~Hiss~-~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~ 193 (337)
T cd01302 138 ----------------AAQLAEEA-------GANVHIAHVSSG-EALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLNG 193 (337)
T ss_pred ----------------HHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhCCC
Confidence 12344444 889999999998 899999999999999999999999999988776677
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|+..++++||+++++|.+++|+|||+|++...|..+ .+|+.++.|+++++..++.+++...+.+++++++
T Consensus 194 ~~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~~~~~~~~i~~~~~ 272 (337)
T cd01302 194 AWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILLTEGVKRGLSLETL 272 (337)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHH
Confidence 889999999999999999999999999999999999987776432 3689999999999999999988877788999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEE
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 386 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t 386 (411)
++++|.|||+++|+.++|+|++|++|||+|||++..|+++.+ +++++.. |+||+|++++|+|.+|
T Consensus 273 ~~~~s~~pA~~~gl~~~g~i~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~t 337 (337)
T cd01302 273 VEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWKVTAE-EIESKAD-WTPFEGMEVTGKPVST 337 (337)
T ss_pred HHHHHHHHHHHcCCCCCCccccCCcCCEEEEeCCCcEEEcHH-HhcccCC-CCCcCCcEEEEEEEEC
Confidence 999999999999995579999999999999999999999998 8899988 9999999999999875
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >PRK09060 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-57 Score=439.26 Aligned_cols=380 Identities=29% Similarity=0.471 Sum_probs=318.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++..+++++.+++++++++||||+++|| ++.|..++.+.+..+.+.++..+.+++.++.+....+.
T Consensus 55 ~PG~ID~HvH~~~~~~~~~e~~~t~~~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~ 133 (444)
T PRK09060 55 LPGVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMP-NTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA 133 (444)
T ss_pred ccCEEeccccccCCCCCccchHHHHHHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH
Confidence 69999999999988888889999999999999999999999 88787788888888877776667899988765543332
Q ss_pred cchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh--hhhccCcCCcccc
Q 015182 81 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH--VKLEDDTLDTRSY 157 (411)
Q Consensus 81 ~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~--~~~~~~~~~~~~~ 157 (411)
.++.++.. .|+.++|.|+++.. ......+...+.+++++ .|+++.+||++...+... +.. .+ ..
T Consensus 134 ---~~l~el~~~~gv~g~k~fm~~~~-~~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~~~~~~----~g--~~ 200 (444)
T PRK09060 134 ---DELAELERLPGCAGIKVFMGSST-GDLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRERKGLRV----EG--DP 200 (444)
T ss_pred ---HHHHHHHhhcCceEEEEEeccCC-CCcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHHHh----cC--Cc
Confidence 33444322 48999999986432 12223455667777654 489999999997754421 111 11 33
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc-cC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE-IP 236 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~-~~ 236 (411)
..+...||..+|..++.+++++++++ +.++|++|+++. +++++++.+++ .++|++||||++++.+. +.
T Consensus 201 ~~~~~~~p~~aE~~av~~~~~la~~~-------~~~lhi~h~st~-~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~ 269 (444)
T PRK09060 201 SSHPVWRDEEAALLATRRLVRLARET-------GRRIHVLHVSTA-EEIDFLADHKD---VATVEVTPHHLTLAAPECYE 269 (444)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHhCC---CeEEEeChHHhccCchhhcc
Confidence 45667899999999999999999977 899999999998 89999987764 38999999999999876 55
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCH
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 316 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 316 (411)
.++...+++||+|+..++++||+++++|++++++|||+|+...+|. .+|+.+++|++++++.++.+++.+.+.++++
T Consensus 270 ~~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~~~l~~~~v~~g~l~~ 346 (444)
T PRK09060 270 RLGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKA---KPYPASPSGMTGVQTLVPIMLDHVNAGRLSL 346 (444)
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHhCCCccEEecCCCCCCHHHhc---CCcccCCCCcccHHHHHHHHHHHHHcCCCCH
Confidence 6678899999999999999999999999999999999999987774 3788999999999999999987655556999
Q ss_pred HHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 317 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 317 ~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+++++++|.|||++||++++|+|++|++|||||||++..|.++.+ .++++.. |+||.|.++.|+|.+||++|++||++
T Consensus 347 ~~~~~~~s~~pa~~~gl~~~G~l~~G~~ADlvl~d~~~~~~v~~~-~~~s~~~-~sp~~g~~l~g~~~~tiv~G~~v~~~ 424 (444)
T PRK09060 347 ERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRRETITNE-WIASRCG-WTPYDGKEVTGWPVGTIVRGQRVMWD 424 (444)
T ss_pred HHHHHHHhHhHHHHhCCCCCCcccCCCcCCEEEEcCCCCEEEChH-HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEEC
Confidence 999999999999999996689999999999999999999999988 8888888 99999999999999999999999999
Q ss_pred CcccCCCCCccccC
Q 015182 397 GNHAPAACGSPILA 410 (411)
Q Consensus 397 g~~~~~~~g~~~~~ 410 (411)
|+++..+.|+.+++
T Consensus 425 g~~~~~~~G~~~~~ 438 (444)
T PRK09060 425 GELVGPPTGEPVRF 438 (444)
T ss_pred CEEccCCCccCccc
Confidence 99987778998875
|
|
| >PRK08323 phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-57 Score=442.62 Aligned_cols=395 Identities=28% Similarity=0.434 Sum_probs=328.1
Q ss_pred CCceeecccccCCCC--CCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPG--RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~--~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++.+. ...+++++++++.++++||||++||+ ++.+.....+.++...........+++.++......
T Consensus 48 ~PGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 126 (459)
T PRK08323 48 MPGGIDPHTHMEMPFGGTVSSDDFETGTRAAACGGTTTIIDFA-LQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDW 126 (459)
T ss_pred eccEEeeeeccccccCCccccCcHHHHHHHHHhCCCCEEEeCc-CCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCC
Confidence 699999999998763 35688899999999999999999998 555555556667666555555667787766543322
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
..+.++++.++++.|+.++|+++++. +...++++++.++++.|+++|.++.+|+++...+.....+.. ..+.....
T Consensus 127 ~~~~~~~~~~~~~~g~~~ik~~~~~~---~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~-~~g~~~~~ 202 (459)
T PRK08323 127 NEVVLDEMPELVEEGITSFKLFMAYK---GALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLL-AEGKTGPE 202 (459)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEEecC---CCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHH-HcCCCChh
Confidence 33346677788888999999998764 224678999999999999999999999987665443221110 11233444
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC-
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD- 237 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~- 237 (411)
.+...+|..+|..++.+++++++.+ +.++|++|+++. +++++++.+|++|+.+++++||||++++.++++.
T Consensus 203 ~~~~~~p~~~e~~~v~~~~~~a~~~-------~~~~~i~H~s~~-~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~ 274 (459)
T PRK08323 203 YHALSRPPEVEGEATNRAIMLAELA-------GAPLYIVHVSCK-EALEAIRRARARGQRVFGETCPQYLLLDESEYDGP 274 (459)
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCC
Confidence 5677899999999999999999876 889999999998 8999999999999999999999999999887754
Q ss_pred ---CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhc-ccCCccccCCCCchhhhHHHHHHHHHH-hc
Q 015182 238 ---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL-DEGNFLKAWGGISSLQFVLPVTWSYGR-KY 312 (411)
Q Consensus 238 ---~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 312 (411)
.+...+++||+|+..++.+||+++++|.+++|+|||+|++..+|.. +..+|+.+|.|+++.+..++.+++... ..
T Consensus 275 ~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~ 354 (459)
T PRK08323 275 DWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTG 354 (459)
T ss_pred ccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCCChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcC
Confidence 3677899999999999999999999999999999999998777642 334688899999999999999986544 44
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
.++++++++++|.|||++||+ +++|+|++|++|||||||++.+|.++.+ +++++.. |+||.|.++.++|.+||++|+
T Consensus 355 ~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADlvi~d~~~~~~v~~~-~~~s~~~-~s~~~g~~~~g~v~~viv~G~ 432 (459)
T PRK08323 355 RITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISAS-TLHSNVD-YNPYEGFEVTGWPVTTLSRGE 432 (459)
T ss_pred CCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCEEEEcCCcccccCHH-HHhhcCC-CCcccCcEEeeeEEEEEECCE
Confidence 599999999999999999999 7789999999999999999999999988 8888887 999999999999999999999
Q ss_pred EEEEcCcccCC-CCCccccC
Q 015182 392 LVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 392 ~v~~~g~~~~~-~~g~~~~~ 410 (411)
+||++|+++.. +.|++|+.
T Consensus 433 ~v~~~g~~~~~~~~G~~~~~ 452 (459)
T PRK08323 433 VVVEDGEFRGKAGHGRFLKR 452 (459)
T ss_pred EEEECCEEeccCCCceEeeC
Confidence 99999999865 47998875
|
|
| >PRK09236 dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=436.71 Aligned_cols=389 Identities=27% Similarity=0.405 Sum_probs=325.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||++||+ ++.|..+..+.+..+.+..+....++++++.+.+.
T Consensus 53 ~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~~GvTtv~d~p-~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--- 128 (444)
T PRK09236 53 LPGMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQIAAQRSLANYSFYFGATN--- 128 (444)
T ss_pred CCCEEEcccccccCcccccccHHHHHHHHHhCCcEEEEeCC-CCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccCc---
Confidence 69999999999988777788999999999999999999999 88787788888888777766667889988865432
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCC-cccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD-TRSYST 159 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~-~~~~~~ 159 (411)
..++++.++.+.|+.++|+|+.+.. ......+.+.++++++ ..|+++++|+++...+...........+ ......
T Consensus 129 ~~~~e~~~l~~~g~~g~k~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~ 204 (444)
T PRK09236 129 DNLDEIKRLDPKRVCGVKVFMGAST-GNMLVDNPETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEM 204 (444)
T ss_pred ccHHHHHHHHHccCcEEEEEeccCC-CCcccCcHHHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhh
Confidence 2456677777789999999986432 1122334556666654 4589999999987654322110000001 112234
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...||..+|..++.++++++++. +.++|+.|+++. ++++++++++..|.++++++||||++++++++...+
T Consensus 205 ~~~~rp~~ae~~av~~~~~la~~~-------~~~~hi~h~st~-~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~~~ 276 (444)
T PRK09236 205 HPLIRSAEACYKSSSLAVSLAKKH-------GTRLHVLHISTA-KELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLG 276 (444)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhccC
Confidence 456899999999999999999876 889999999998 899999999888999999999999999998877778
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|...++..||+++++|++++|+|||+|+...+|. .+|+.++.|+++++..++.+++.+.+.+++++++
T Consensus 277 ~~~~~~Pplr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k~---~~~~~~~~G~~~~e~~l~~l~~~v~~~~~~~~~~ 353 (444)
T PRK09236 277 NLIKCNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEKQ---GPYFQAPSGLPLVQHALPALLELVHEGKLSLEKV 353 (444)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhCCCCcEEECCCCCCCHHHhc---CCcccCCCCcccHHHHHHHHHHHHHhcCCCHHHH
Confidence 8899999999999999999999999999999999999877664 4788999999999998998887777778999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||++||++++|+|++|++|||+|||++.+|.++.+ +++++.. |+||+|.++.++|.+||++|++||++|++
T Consensus 354 ~~~~t~~pA~~lgl~~~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~g~~ 431 (444)
T PRK09236 354 VEKTSHAPAILFDIKERGFIREGYWADLVLVDLNSPWTVTKE-NILYKCG-WSPFEGRTFRSRVATTFVNGQLVYHNGQL 431 (444)
T ss_pred HHHHHHhHHHhcCCCCCCccccCCcCCEEEEcCCCCEEEchH-HhcccCC-CCCCCCCEEeeeEEEEEECCEEEEECCEE
Confidence 999999999999996689999999999999999999999988 8888888 99999999999999999999999999999
Q ss_pred cCCCCCccccC
Q 015182 400 APAACGSPILA 410 (411)
Q Consensus 400 ~~~~~g~~~~~ 410 (411)
+..+.|+.|++
T Consensus 432 ~~~~~G~~~~~ 442 (444)
T PRK09236 432 VESCRGQRLEF 442 (444)
T ss_pred ccCcCceEeec
Confidence 87668999875
|
|
| >cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=438.94 Aligned_cols=387 Identities=30% Similarity=0.449 Sum_probs=321.4
Q ss_pred CCceeecccccCCCCC--CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~--~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++.+.. .+++++++++++++++||||++||+ ++.|.....+.++...........+++.++......
T Consensus 50 lPGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 128 (447)
T cd01314 50 LPGGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFA-IPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDW 128 (447)
T ss_pred ecCEEeccccccccccCccCcchHHHHHHHHHhCCCcEEEeCC-CCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCC
Confidence 6999999999987653 5688899999999999999999998 555545556667666555555566777666543332
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
..+.++++.++.+.|+.++|+|+.+. +...++++.+++++++|+++|+++.+|+++...+.....+.- ..+.....
T Consensus 129 ~~~~~~~~~~l~~~g~~~ik~~~~~~---~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~-~~g~~~~~ 204 (447)
T cd01314 129 TDSVIEELPELVKKGISSFKVFMAYK---GLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLL-AQGKTGPE 204 (447)
T ss_pred ChHHHHHHHHHHHcCCCEEEEEeccC---CCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH-HcCCCChH
Confidence 33345667777778899999998764 234568999999999999999999999977665443332110 11233344
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC--
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP-- 236 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~-- 236 (411)
.+...+|..+|..++.+++++++.+ +.++|++|+++. .++++++.+|++|+++++++||||++++.+++.
T Consensus 205 ~~~~~~p~~~e~~~v~~~~~la~~~-------~~~~~~~H~s~~-~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~ 276 (447)
T cd01314 205 YHALSRPPEVEAEATARAIRLAELA-------GAPLYIVHVSSK-EAADEIARARKKGLPVYGETCPQYLLLDDSDYWKD 276 (447)
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCeEEEecCchhheeCHHHhccc
Confidence 5667899999999999999988765 889999999998 899999999999999999999999999988763
Q ss_pred C-CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-CC
Q 015182 237 D-GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GV 314 (411)
Q Consensus 237 ~-~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l 314 (411)
. .+...+++||+|...++.+||+++++|++++|||||+|++...|.....+|+.+|.|+++++++++.+++..... .+
T Consensus 277 ~~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~ 356 (447)
T cd01314 277 WFEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRI 356 (447)
T ss_pred cccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCCHHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCC
Confidence 2 567789999999999999999999999999999999999987776544579999999999999999999776544 59
Q ss_pred CHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 315 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 315 ~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
+++++++++|.|||++||+ +++|+|++|++|||||||++.+|.++.+ .++++.. |+||.|.++.++|.+||++|++|
T Consensus 357 ~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~t~v~G~~v 434 (447)
T cd01314 357 TLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISAD-THHHNVD-YNIFEGMKVKGWPVVTISRGKVV 434 (447)
T ss_pred CHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcCEEecHH-HhhccCC-CCcccCeEEeeeEEEEEECCEEE
Confidence 9999999999999999999 7789999999999999999999999987 7777777 99999999999999999999999
Q ss_pred EEcCcccCC
Q 015182 394 YKEGNHAPA 402 (411)
Q Consensus 394 ~~~g~~~~~ 402 (411)
|++|+++..
T Consensus 435 ~~~~~~~~~ 443 (447)
T cd01314 435 VEDGELVGE 443 (447)
T ss_pred EECCEEecc
Confidence 999999854
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. |
| >PRK02382 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=436.18 Aligned_cols=381 Identities=34% Similarity=0.483 Sum_probs=322.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||+++|+ ++.|.....+.++.+.+.+...+.+++.++.+..
T Consensus 53 ~PG~ID~H~H~~~~g~~~~e~~~~~~~aa~~gGvTtv~~~~-~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~---- 127 (443)
T PRK02382 53 LPGGIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAELAARKSIVDFGINGGVT---- 127 (443)
T ss_pred cCCEeeeeeeccCCCCCchhhHHHHHHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----
Confidence 69999999999988877888999999999999999999999 8888777778888877766666678887765432
Q ss_pred cchHHHHHHHHCCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 81 YNASALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
..++++.++.+.|+.++ |+|+.+.. .+ ...+++.+.++++.++++|+++.+|+++...+...... ..+......
T Consensus 128 ~~~~~l~~l~~~gv~~~gkv~~~~~~-~~-~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~---~~g~~~~~~ 202 (443)
T PRK02382 128 GNWDPLESLWERGVFALGEIFMADST-GG-MGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAKL---LKGDADADA 202 (443)
T ss_pred cchhhHHHHHhcCccceeEEEEEecC-CC-cccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHh---hcCCCCHhh
Confidence 22445677777788888 88875432 12 24577899999999999999999999987664432211 112223455
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...+|..+|..++.+++.++++. |.++|++|+++. ++++++++++ +++++|||||+++++++..++
T Consensus 203 ~~~~~p~~~E~~av~~~~~la~~~-------g~~~hi~h~ss~-~~~~~i~~~~-----vt~ev~ph~L~l~~~~~~~~~ 269 (443)
T PRK02382 203 WSAYRPAAAEAAAVERALEVASET-------GARIHIAHISTP-EGVDAARREG-----ITCEVTPHHLFLSRRDWERLG 269 (443)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHCC-----cEEEEchhhhhcCHHHHhccC
Confidence 667899999999999999999976 899999999998 8999998653 899999999999998876667
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||+|+..++++||+++.+|.+++|+|||+|++..+|. .+|+.+|.|++|+++.++.++..+.+.+++++++
T Consensus 270 ~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~~~~~K~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~l~~~ 346 (443)
T PRK02382 270 TFGKMNPPLRSEKRREALWERLNDGTIDVVASDHAPHTREEKD---ADIWDAPSGVPGVETMLPLLLAAVRKNRLPLERV 346 (443)
T ss_pred ceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCCCHHHhc---CChhhCCCCcccHHHHHHHHHHHHHcCCCCHHHH
Confidence 7889999999999999999999999999999999999987775 4799999999999999999987766778999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||++||++++|+|++|++|||+|||++..|.++.+ .++++.. |+||.|.+.. .|.+||++|++||++|++
T Consensus 347 ~~~~t~~pA~~~g~~~~G~l~~G~~AD~vi~d~~~~~~~~~~-~~~s~~~-~sp~~g~~~~-~v~~tiv~G~~v~~~~~~ 423 (443)
T PRK02382 347 RDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDAAREIRGD-DLHSKAG-WTPFEGMEGV-FPELTMVRGTVVWDGDDI 423 (443)
T ss_pred HHHHhHHHHHHcCCCCCCccCCCCcCCEEEEcCCCcEEEcHH-HhcccCC-CCCcCCCEec-eEEEEEECCEEEEECCEE
Confidence 999999999999997689999999999999999999999887 7888887 9999998866 899999999999999998
Q ss_pred cCCC-CCccccC
Q 015182 400 APAA-CGSPILA 410 (411)
Q Consensus 400 ~~~~-~g~~~~~ 410 (411)
+..+ .|+.++.
T Consensus 424 ~~~~~~G~~~~~ 435 (443)
T PRK02382 424 NAKRGRGEFLRG 435 (443)
T ss_pred ecCCCCceEeCC
Confidence 8664 6888864
|
|
| >PRK04250 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-56 Score=425.31 Aligned_cols=352 Identities=30% Similarity=0.441 Sum_probs=295.2
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.+++++++++||||+++|| ++.|..++.+.+..+.+.++..+.++++++. .+..
T Consensus 46 ~PG~ID~HvH~~~~~~~~~e~~~~~~~aa~~gGvTtv~~~p-~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~-- 121 (398)
T PRK04250 46 LPGLIDVHVHLRDFEESYKETIESGTKAALHGGITLVFDMP-NTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAG-- 121 (398)
T ss_pred ccCEEeccccccCCCCCcHHHHHHHHHHHHhCCeEEEEECC-CCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCC--
Confidence 69999999999887777888999999999999999999999 8888888999999888888878899999886 4433
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
.+.++.++.. .++|+|+.+.. + ....+.+... ++ +.+..+.+||++..... .
T Consensus 122 -~~~~l~~l~~---~~~k~f~~~~~--~--~~~~~~~~~~--~~-~~~~~v~~H~E~~~~~~-----------------~ 173 (398)
T PRK04250 122 -NCEKAEEIKA---DFYKIFMGAST--G--GIFSENFEVD--YA-CAPGIVSVHAEDPELIR-----------------E 173 (398)
T ss_pred -CHHHHHHHHh---hheEEEEecCC--C--chhHHHHHHH--HH-hcCCeEEEEecChhhhh-----------------c
Confidence 2334444432 25788875431 1 1122223222 23 33567999999876522 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCC-EEEEcccccccccccccCCCC
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDS-ITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~-i~~~~~p~~l~~~~~~~~~~~ 239 (411)
...||..+|..++.+++.+++.+ +.++|++|+|+. ++++++++ +|+. ++|++|||||+++.+++ .++
T Consensus 174 ~~~~p~~aE~~av~r~~~la~~~-------~~~lhi~HvSt~-~~~~~i~~---~g~~~vt~Ev~ph~L~l~~~~~-~~~ 241 (398)
T PRK04250 174 FPERPPEAEVVAIERALEAGKKL-------KKPLHICHISTK-DGLKLILK---SNLPWVSFEVTPHHLFLTRKDY-ERN 241 (398)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHH---cCCCcEEEEeCHHHhccCHHHH-CCC
Confidence 35789999999999999999976 999999999998 89998854 4886 99999999999998877 467
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQL 319 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~a 319 (411)
...+++||||+..++++||+++. .+++|+|||+|++..+|. ..++|++|+++.++.+++.+.+.+++++++
T Consensus 242 ~~~k~~PPLR~~~d~~aL~~~l~--~Id~i~sDHaP~~~~~k~-------~~~~G~~g~e~~lpl~~~~v~~~~lsl~~~ 312 (398)
T PRK04250 242 PLLKVYPPLRSEEDRKALWENFS--KIPIIASDHAPHTLEDKE-------AGAAGIPGLETEVPLLLDAANKGMISLFDI 312 (398)
T ss_pred CceEEcCCCCCHHHHHHHHHhhc--cCCEEEcCCcccCHHHhh-------cCCCCcchHHHHHHHHHHHHHhcCCCHHHH
Confidence 88999999999999999999995 499999999999987763 246899999999999998766667999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||++||++++| |++|++|||+|||++..|.++.+ .++++.. |+||+|.++.|+|.+||++|++||++|++
T Consensus 313 v~~~t~npAk~lgl~~~G-L~~G~~ADlvi~D~~~~~~v~~~-~~~s~~~-~sp~~g~~l~g~v~~tiv~G~~v~~~g~~ 389 (398)
T PRK04250 313 VEKMHDNPARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKAE-ELYTKAG-WTPYEGFKLKGKVIMTILRGEVVMEDDEI 389 (398)
T ss_pred HHHHHHHHHHHhCCCCcC-ccCCCcCCEEEEcCCCcEEEChh-hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEE
Confidence 999999999999996689 99999999999999999999988 7888887 99999999999999999999999999999
Q ss_pred cCCCCCccc
Q 015182 400 APAACGSPI 408 (411)
Q Consensus 400 ~~~~~g~~~ 408 (411)
+..+.|+.+
T Consensus 390 ~~~~~G~~~ 398 (398)
T PRK04250 390 IGKPRGVRI 398 (398)
T ss_pred cCCCCCeEC
Confidence 987788764
|
|
| >TIGR02033 D-hydantoinase D-hydantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-56 Score=437.12 Aligned_cols=394 Identities=30% Similarity=0.449 Sum_probs=319.3
Q ss_pred CCceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++.+ +..+++++++++++++++||||++||+ ++.|.....+.++...+...+...+++.++......
T Consensus 50 lPGlID~H~H~~~~~~~~~~~e~~~~~s~~a~~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (454)
T TIGR02033 50 MPGGIDVHTHLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFA-LPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHW 128 (454)
T ss_pred ecCEecceeccCcccCCCCCcchHHHHHHHHHhCCCCEEEeCc-CCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCC
Confidence 69999999999876 356788999999999999999999999 665554556667666555555556777665433222
Q ss_pred CccchHH-HHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 79 NAYNASA-LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 79 ~~~~~~~-~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
..+.+.+ +..+.+.|+..+|+|+++. +...+++++++++++.|+++|+++.+|+++.........+.- ..+....
T Consensus 129 ~~~~~~~~~~~~~~~g~~~ik~~~~~~---~~~~~~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~-~~G~~~~ 204 (454)
T TIGR02033 129 NDEVLEEHIPELVEEGITSFKVFMAYK---NLLMVDDEELFEILKRAKELGALLQVHAENGDVIAELQARLL-AQGKTGP 204 (454)
T ss_pred cHHHHHHHHHHHHhcCCcEEEEEeecC---CCCCCCHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHH-HcCCCCh
Confidence 2222334 4445567889999998764 234578999999999999999999999977655433322110 1122333
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..|...+|..+|..++.+++.++..+ +.++|++|+++. .+++.++.+|+.|++++|++||||++++.+.+..
T Consensus 205 ~~~~~~~p~~~e~~~v~~~~~~~~~~-------~~~~~i~H~s~~-~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~ 276 (454)
T TIGR02033 205 EYHALSRPPESEAEAVARAIALAALA-------NAPLYVVHVSTA-SAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDK 276 (454)
T ss_pred hHhhhcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEcCchheeecHHHhcC
Confidence 44567789999999999999988765 889999999998 7899999999999999999999999998877643
Q ss_pred ---CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhh-cccCCccccCCCCchhhhHHHHHHHHHHh-c
Q 015182 238 ---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL-LDEGNFLKAWGGISSLQFVLPVTWSYGRK-Y 312 (411)
Q Consensus 238 ---~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 312 (411)
.....+++||+|+..++++||+++.+|.++++||||+|++...|. ...++|+.+|+|+++.++.++.+++.... .
T Consensus 277 ~~~~~~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~ 356 (454)
T TIGR02033 277 PGFEGAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATG 356 (454)
T ss_pred cccccceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCCHHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcC
Confidence 456788999999999999999999999999999999999876662 11247888999999999999999876554 4
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
.++++++++++|.|||++||+ +++|+|++|++|||+|+|++.+|.++.+ .++++.. |+||.|+++.|+|.+||++|+
T Consensus 357 ~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~ 434 (454)
T TIGR02033 357 RITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNRTTVISAE-THHDNAD-YNPFEGFKVQGAVVSVLSRGR 434 (454)
T ss_pred CCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEEEEcCCcCeeechH-HhhccCC-CCcccCeEEeeeEEEEEECCE
Confidence 599999999999999999999 6689999999999999999999999987 7778888 999999999999999999999
Q ss_pred EEEEcCcccCCC-CCcccc
Q 015182 392 LVYKEGNHAPAA-CGSPIL 409 (411)
Q Consensus 392 ~v~~~g~~~~~~-~g~~~~ 409 (411)
+||++|+++..+ .|++|+
T Consensus 435 ~v~~~g~~~~~~~~g~~~~ 453 (454)
T TIGR02033 435 VVVEDGQFVGTAGSGRFIK 453 (454)
T ss_pred EEEECCEEecCCCCcceec
Confidence 999999998654 598886
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. |
| >KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=407.78 Aligned_cols=394 Identities=29% Similarity=0.407 Sum_probs=336.8
Q ss_pred CCceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+||.||.|+|+.+| |.+.+++|.+++++|+++|+|.|+|++.. .+.....++|+.+++.++.+..+||+++++++++
T Consensus 65 iPGgID~Hthlq~p~~G~ts~DdF~~GTkAAlaGGtTmiID~vlp-~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W 143 (522)
T KOG2584|consen 65 IPGGIDPHTHLQMPFMGMTSVDDFFQGTKAALAGGTTMIIDFVLP-DKGTSLVEAFEKWREWADPKVCCDYGLHVGITWW 143 (522)
T ss_pred ecCccCccceeccccCCccchhhhhcccHHHhcCCceEEEEEecC-CCCchHHHHHHHHHhhcCCceeeeeeeeEeeeec
Confidence 69999999999998 77899999999999999999999999843 3445778899999988888999999999999987
Q ss_pred CccchHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 79 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 79 ~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
..+..++|.-+. +.|+.+||+||.|. +++++++++|.++++.+++.|-...+|+++.+.+.+..++.- ..+...-
T Consensus 144 ~~~v~eem~~l~~ekGvnsF~~fmayk---~~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l-~~gitgP 219 (522)
T KOG2584|consen 144 SPSVKEEMEILVKEKGVNSFKFFMAYK---DLYMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLL-ELGITGP 219 (522)
T ss_pred CcchHHHHHHHhhhcCcceEEeeeeec---cccccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHH-HcCCcCc
Confidence 655445565554 47999999999986 557899999999999999999999999999988776654331 1112222
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
+-+..+||+..|.+++.+++.++.+. .+++.+.|+.+. .+.+.|..+|++|.-+..++....+..+...+..
T Consensus 220 Egh~lSRPee~EaEA~~rai~ia~~~-------ncPlyvvhVmsk-saa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~ 291 (522)
T KOG2584|consen 220 EGHELSRPEELEAEATNRAITIARQA-------NCPLYVVHVMSK-SAADAIALARKKGRVVFGEPITASLGTDGSHYWS 291 (522)
T ss_pred ccccccCchhhhHHHHHHHHHHHHhc-------CCCcceEEEeeh-hHHHHHHHHHhcCceeecccchhhhcccchhhcc
Confidence 34567999999999999999999876 777888898887 7889999998888766666555556555443322
Q ss_pred ----CCcceEEcCCCCChh-hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc
Q 015182 238 ----GDTRFKCAPPIRDAA-NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 312 (411)
Q Consensus 238 ----~~~~~~~~p~lr~~~-~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 312 (411)
....+.+.||+|... ..+.||.+|..|.+-..+|||++++..+|.++.++|..+|.|++|++.+++..|......
T Consensus 292 ~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~ 371 (522)
T KOG2584|consen 292 KDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHS 371 (522)
T ss_pred CChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCCCCCCHHHHhhccCccccCCCccccccccceeeeehhccc
Confidence 246788899999865 789999999999999999999999999999999999999999999999999999877665
Q ss_pred C-CCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 313 G-VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 313 ~-l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
| |++.+.+...+.|+|++|++ ++||+|++|.+|||||||++...+|+.+ +.++... ++.|+|++..|.|.-||.+|
T Consensus 372 G~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwdp~at~tIS~~-th~~~~d-~NifEGm~~~G~plvtIsrG 449 (522)
T KOG2584|consen 372 GKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISAK-THHSAND-FNIFEGMTVHGVPLVTISRG 449 (522)
T ss_pred CccCcccEEEEecccchhheeccCcCceecccCCCcEEEECCCcceEeccc-ccccccc-ceeecCcEecceeEEEEeCC
Confidence 5 99999999999999999999 9999999999999999999999999988 7777777 99999999999999999999
Q ss_pred EEEEEcCccc-CCCCCcccc
Q 015182 391 NLVYKEGNHA-PAACGSPIL 409 (411)
Q Consensus 391 ~~v~~~g~~~-~~~~g~~~~ 409 (411)
|+||+||++. ..+.|++|-
T Consensus 450 riv~eng~~~v~~g~G~fip 469 (522)
T KOG2584|consen 450 RVVYENGNLVVTEGSGRFIP 469 (522)
T ss_pred eEEEecCcEEEecCCCceee
Confidence 9999999986 568898874
|
|
| >PRK00369 pyrC dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=415.47 Aligned_cols=339 Identities=29% Similarity=0.386 Sum_probs=279.5
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|+++||.+++|++.+++++|++||||||+||| |+.|..++.+.++.+.+.+++++.++++++.+.+.
T Consensus 46 lPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mP-nt~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~--- 121 (392)
T PRK00369 46 LPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP-NTIPPLNTPEAITEKLAELEYYSRVDYFVYSGVTK--- 121 (392)
T ss_pred eCCEEEcccccCCCCCcccccHHHHHHHHHhCCcEEEEECC-CCCCCCChHHHHHHHHHHhCcCCeEEEEEEeeccC---
Confidence 69999999999999999999999999999999999999999 88898899999999888888888999999876532
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
... ++.+.|+.++|.|.+ + ....+.+ +.+.+++.++.+||++...+... .
T Consensus 122 -~~~---el~~~~~~g~k~f~~-----~--~~~~~~~----~~~~~~~~~v~~HaE~~~l~~~~---------------~ 171 (392)
T PRK00369 122 -DPE---KVDKLPIAGYKIFPE-----D--LEREETF----RVLLKSRKLKILHPEVPLALKSN---------------R 171 (392)
T ss_pred -CHH---HHHHhhCceEEEECC-----C--CchHHHH----HHHHHhCCEEEEeCCCHHHhhcc---------------h
Confidence 222 333457889998852 1 1223334 33445558999999997654311 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
...+|..+|..++.++..+ .++|++|+|+. +++ +.+|++| ++|++|||||+++.+ .+.
T Consensus 172 ~~~rp~~aE~~ai~~~~~~------------~~lhi~HvSt~-~~v---~~ak~~g--vt~Ev~pHhL~l~~~----~~~ 229 (392)
T PRK00369 172 KLRRNCWYEIAALYYVKDY------------QNVHITHASNP-RTV---RLAKELG--FTVDITPHHLLVNGE----KDC 229 (392)
T ss_pred hcccCHHHHHHHHHHHHHh------------CCEEEEECCCH-HHH---HHHHHCC--CeEEechhHheeccC----CCC
Confidence 2358888888776555443 46999999998 554 4556666 789999999999875 256
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||||+.+++++||++|.+ +++|+|||+|+...+|. .+|+.+|+|++|+++.++.+++.+.+.++++++++
T Consensus 230 ~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K~---~~f~~~~~Gi~GlE~~lpll~~~v~~~~lsl~~~v 304 (392)
T PRK00369 230 LTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKL---QPYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAV 304 (392)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHcc---CCHhhCCCCCeeHHHHHHHHHHHHHcCCCCHHHHH
Confidence 78999999999999999999998 99999999999987774 47999999999999999999986666679999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||++ .|.|++|++|||++||++ .|.+ + .++++.. |+||+|.++.|+|.+||++|++||++|++.
T Consensus 305 ~~~s~nPA~ilgl~-~g~i~~G~~ADlvi~d~~-~~~~--~-~~~sk~~-~sp~~G~~l~G~v~~ti~~G~~v~~~~~~~ 378 (392)
T PRK00369 305 ELISTNPARILGIP-YGEIKEGYRANFTVIQFE-DWRY--S-TKYSKVI-ETPLDGFELKASVYATIVQGKLAYLEGEVF 378 (392)
T ss_pred HHHHHHHHHHhCCC-CCccCCCCccCEEEEeCC-ceeE--c-cccccCC-CCCCCCCEeeeEEEEEEECCEEEEECCeEe
Confidence 99999999999995 488999999999999998 6775 3 5578888 999999999999999999999999999988
Q ss_pred C-CCCCc
Q 015182 401 P-AACGS 406 (411)
Q Consensus 401 ~-~~~g~ 406 (411)
. ...|+
T Consensus 379 ~~~g~G~ 385 (392)
T PRK00369 379 PVKGINP 385 (392)
T ss_pred cCCCCCC
Confidence 4 33444
|
|
| >PRK09357 pyrC dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=421.51 Aligned_cols=370 Identities=33% Similarity=0.487 Sum_probs=312.5
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-C
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-N 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (411)
+|||||+|+|++.++..+.+++.++++.++++||||++||+ ++.|.....+.++.+.+.++..+.+++.++..++.. .
T Consensus 52 ~PG~ID~H~H~~~~~~~~~e~~~~~~~~a~~~GvTt~~d~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (423)
T PRK09357 52 APGLVDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLA 130 (423)
T ss_pred eCCEEecccccCCCCccccccHHHHHHHHHhCCCeEEEecC-CCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCC
Confidence 69999999999888777889999999999999999999999 777877777788877776666666777776554322 1
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++..+.+.|+.+++.+ +....+++.++++++.|+++|+++++|+++.......+.+.| ......
T Consensus 131 ~~~~~~~~~l~~~gv~~~~~~-------~~~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g----~~~~~~ 199 (423)
T PRK09357 131 GEELTEFGALKEAGVVAFSDD-------GIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEG----EVSARL 199 (423)
T ss_pred CccHHHHHHHHhCCcEEEECC-------CcccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCC----hhhHHh
Confidence 234566666666777666532 223457899999999999999999999998765443222221 223345
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...+|..+|..++.+++.+++++ +.++|++|++.. +.+++++.++++|+.+++++||||++++.+++..++
T Consensus 200 ~~~~~p~~~E~~~i~~~~~la~~~-------g~~~hi~H~s~~-~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~ 271 (423)
T PRK09357 200 GLPGIPAVAEEVMIARDVLLAEAT-------GARVHICHVSTA-GSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYD 271 (423)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCEEEEechHHheEcHHHHhCcC
Confidence 667899999999999999999876 899999999998 899999999999999999999999999998776667
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQ 318 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~ 318 (411)
...+++||+|...++..||+++++|.++++||||+|++..+|. .+|+.++.|+++++..++.+++... +.++++++
T Consensus 272 ~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~p~~~~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~ 348 (423)
T PRK09357 272 PNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKE---CEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQ 348 (423)
T ss_pred CceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCCCCChHHcc---CCHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHH
Confidence 7889999999999999999999999999999999999877764 2688999999999999999887544 45699999
Q ss_pred HHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 319 al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+++++|.|||+++|++. |+|++|++|||+|+|++.+|+++.+ .++++.. |+||+|.++.|+|..||++|++||++
T Consensus 349 ~~~~~t~~~A~~~g~~~-G~i~~G~~AD~~i~d~~~~~~v~~~-~~~~~~~-~~p~~g~~~~g~v~~t~v~G~~v~~~ 423 (423)
T PRK09357 349 LLEKMTINPARILGLPA-GPLAEGEPADLVIFDPEAEWTVDGE-DFASKGK-NTPFIGMKLKGKVVYTIVDGKIVYQD 423 (423)
T ss_pred HHHHHhHHHHHHhCCCC-CccCCCCcCCEEEEcCCCCEEEchh-hcccCCC-CCCCcCCEEeeEEEEEEECCEEEecC
Confidence 99999999999999965 9999999999999999999999887 7888887 99999999999999999999999975
|
|
| >cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-54 Score=400.99 Aligned_cols=336 Identities=28% Similarity=0.454 Sum_probs=277.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||+|+|+++|+.+++|++.+++++|++||||||.||| |+.|..++.+.++.+.+.+++.+.++++++.+.+..+.
T Consensus 5 lPG~ID~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~dmP-nt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~~~~ 83 (344)
T cd01316 5 LPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATSTNA 83 (344)
T ss_pred eCCeEEeeeccCCCCcCCcChHHHHHHHHHhCCCeEEEECC-CCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecCCCH
Confidence 69999999999999999999999999999999999999999 88888889999999988887778999999977654432
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
..+.++.. .+.++|+|+.+.. .... .++.........+...+.++.+|++..
T Consensus 84 ---~~~~~l~~-~~~g~k~f~~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~~~~~e~~---------------------- 135 (344)
T cd01316 84 ---ATVGELAS-EAVGLKFYLNETF-STLI-LDKITAWASHFNAWPSTKPIVTHAKSQ---------------------- 135 (344)
T ss_pred ---HHHHHHHh-ccCeEEEEECCCC-CCCc-cchHHHHHHHHHhcccCCCeEEehhhH----------------------
Confidence 23444433 3678999875421 1111 222222233334445578888887653
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
.+.+++++++.+ +.++|++|+|+. +++++++.+|++|++|+|++|||||+++.+++.. .
T Consensus 136 -----------~~~~~l~la~~~-------g~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~--~ 194 (344)
T cd01316 136 -----------TLAAVLLLASLH-------NRSIHICHVSSK-EEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR--G 194 (344)
T ss_pred -----------HHHHHHHHHHHH-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc--C
Confidence 245567777766 899999999999 9999999999999999999999999999887644 4
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
..+++||||+..++++||+++. .+++|+|||+|+...+|.. + .+++|++|+++.++.+++.+.+.++++.+++
T Consensus 195 ~~k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~---~--~a~~G~~g~e~~lpl~~~~v~~~~i~l~~l~ 267 (344)
T cd01316 195 QYEVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTG---N--KPPPGFPGVETSLPLLLTAVHEGRLTIEDIV 267 (344)
T ss_pred CceeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC---C--CCCCCcccHHHHHHHHHHHHHcCCCCHHHHH
Confidence 6899999999999999999994 5899999999998777631 2 6789999999999999986555679999999
Q ss_pred HHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 321 SWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|.|||++||+.. + .+||+|+|++..|+++.+ .++++.. |+||+|++++|+|.+||++|++||++|++.
T Consensus 268 ~~~s~nPAk~~gl~~------~-~~~lvi~d~~~~~~v~~~-~~~s~~~-~sp~~G~~l~G~v~~ti~rG~~v~~~g~~~ 338 (344)
T cd01316 268 DRLHTNPKRIFNLPP------Q-SDTYVEVDLDEEWTIPKN-PLQSKKG-WTPFEGKKVKGKVQRVVLRGETAFIDGEIV 338 (344)
T ss_pred HHHHHhHHHHhCCCC------C-CCCEEEEeCCCcEEEChh-hccccCC-CCCCCCCEEeeEEEEEEECCEEEEECCEEc
Confidence 999999999999832 2 337999999999999988 8888888 999999999999999999999999999987
Q ss_pred CC
Q 015182 401 PA 402 (411)
Q Consensus 401 ~~ 402 (411)
..
T Consensus 339 ~~ 340 (344)
T cd01316 339 AP 340 (344)
T ss_pred cC
Confidence 53
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. |
| >cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-54 Score=408.03 Aligned_cols=360 Identities=35% Similarity=0.493 Sum_probs=313.2
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+||+||+|+|++.++...++++.+++++|+.+||||++||+ ++.|..++.+.++.+.+.++....+++.++++++....
T Consensus 13 lPG~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (374)
T cd01317 13 APGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVIDNPAVVELLKNRAKDVGIVRVLPIGALTKGLK 91 (374)
T ss_pred ecCEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHhccCCceeEEEEEEEeeCCC
Confidence 69999999999998888899999999999999999999999 88888888999988887777666778877776654332
Q ss_pred c-chHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 81 Y-NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 81 ~-~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
. .++++.++.+.|+.++|.+ +++..+...+.++++.+++.|.++.+|+++...+.+.+.+ .+......
T Consensus 92 ~~~~~~i~~l~~~G~~~~k~~-------~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~~~~~----~g~~~~~~ 160 (374)
T cd01317 92 GEELTEIGELLEAGAVGFSDD-------GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMN----EGKVASRL 160 (374)
T ss_pred cccHHHHHHHHHCCcEEEEcC-------CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhccCcc----CChhhHHh
Confidence 2 3677888888899999953 2235678899999999999999999999987765544332 22345566
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...+|..+|..++.+++++++++ +.++|++|+++. +.++.++++++.|+.++++++|||++++++++...+
T Consensus 161 ~~~~~p~~~e~~~v~~~~~la~~~-------~~~i~i~h~ss~-~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~~~ 232 (374)
T cd01317 161 GLPGIPPEAETIMVARDLELAEAT-------GARVHFQHLSTA-RSLELIRKAKAKGLPVTAEVTPHHLLLDDEALESYD 232 (374)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhccC
Confidence 778899999999999999999976 899999999998 899999999999999999999999999998876677
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-CCCHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLEQ 318 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~~ 318 (411)
...+++||+|...++..||+++++|++++|+|||+|++...|. .+|+.++.|+++.+..++.+++...+. .+++++
T Consensus 233 ~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~---~~~~~~~~Gi~g~e~~l~~~~~~~~~~~~~~~~~ 309 (374)
T cd01317 233 TNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKD---LPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPD 309 (374)
T ss_pred CceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHcc---CCHhhCCCcHhHHHHHHHHHHHHHHHcCCCCHHH
Confidence 8889999999999999999999999999999999999877664 368889999999999999988776554 489999
Q ss_pred HHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEE
Q 015182 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 386 (411)
Q Consensus 319 al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t 386 (411)
+++++|.|||+++|+. .|+|++|++|||+++|++.+|.+..+ .++++.. |+||+|+++.|+|.+|
T Consensus 310 ~~~~~t~npA~~lgl~-~G~l~~G~~ADlvi~d~~~~~~~~~~-~~~s~~~-~sp~~G~~l~g~~~~t 374 (374)
T cd01317 310 LIRALSTNPAKILGLP-PGRLEVGAPADLVLFDPDAEWIVDEE-TFRSKSK-NTPFDGQKLKGRVLAT 374 (374)
T ss_pred HHHHHHHHHHHHhCCC-CCcccCCCcCCEEEECCCCCEEEChh-hccccCC-CCCCCCCEEeEEEEEC
Confidence 9999999999999996 49999999999999999999999998 8888888 9999999999999775
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. |
| >cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=336.14 Aligned_cols=321 Identities=18% Similarity=0.212 Sum_probs=246.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceEEEEEeeecCCC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPEN 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (411)
+||+||+|+|++++ +++.+++++|.++| |++++|| ++.|+.++.+.+..+........ .+++.++.++....
T Consensus 3 ~Pg~iD~h~h~~~~-----~~~~~~~~aa~~gG-Ttvv~mp-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 75 (335)
T cd01294 3 IPRPDDMHLHLRDG-----AMLKLVLPYTARGF-SRAIVMP-NLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLTE 75 (335)
T ss_pred CCCcceeEecCCCc-----hHHHHHHHHHHhCC-CEEEECC-CCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEeccC
Confidence 69999999999974 78889999999999 9999999 88787777776666655554444 46666655442211
Q ss_pred ccchHHHHHHHHC-CceEEEEeccCCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 80 AYNASALEALLNA-GVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 80 ~~~~~~~~~~~~~-g~~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
....+++.++.+. |+.|+|+|+..... .+....+.+.+..+++.+.++|++|.+||++.....
T Consensus 76 ~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~--------------- 140 (335)
T cd01294 76 NTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKI--------------- 140 (335)
T ss_pred CCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCcccc---------------
Confidence 1235677777776 99999998742111 112223568999999999999999999999865311
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
.+...|...+.+++.+++++ ++.++|++|+++. +++++++++|+ +|++|+|||||+++.+++..
T Consensus 141 ------~~~~~e~~~~~~~~~lA~~~------p~~~v~i~Hvst~-~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~~ 204 (335)
T cd01294 141 ------DVLDREAKFIPVLEPLAQRF------PKLKIVLEHITTA-DAVEYVKSCNE---NVAATITPHHLLLTRDDLLG 204 (335)
T ss_pred ------cchhhHHHHHHHHHHHHHHc------CCCeEEEecccHH-HHHHHHHhCCC---CcEEEEchhHheeeHHHhcC
Confidence 01112233456677777753 3899999999998 89999988764 79999999999999887654
Q ss_pred --CCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCC
Q 015182 238 --GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 314 (411)
Q Consensus 238 --~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~-~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 314 (411)
++...+++||||+.+++++||+++.+|.++ +|+|||+|++..+|. .++. ..|+.+++..++.++... ++++
T Consensus 205 ~~~g~~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~---~~~g--~~Gi~~~~~~l~~~~~~~-~~~l 278 (335)
T cd01294 205 GGLNPHLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKE---SSCG--CAGIFSAPIALPYLAEVF-EEHN 278 (335)
T ss_pred CCCCCCeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCcccc---CCCC--CccccCHHHHHHHHHHHH-hccC
Confidence 588899999999999999999999999999 599999999977764 2332 236666666777776444 3589
Q ss_pred CHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCc
Q 015182 315 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR 377 (411)
Q Consensus 315 ~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~ 377 (411)
++++++++++.||||+||+ +.+|+ |++++ .+|+++.+ .+.++.. |+||+|-
T Consensus 279 ~l~~~v~~~s~nPA~i~gl~~~kg~--------i~~~~--~~~~v~~~-~~~s~~~-~sp~~g~ 330 (335)
T cd01294 279 ALDKLEAFASDNGPNFYGLPPNKKT--------ITLVK--EPWKVPEK-IPFGNNG-VVPFRAG 330 (335)
T ss_pred CHHHHHHHHHhHHHHHhCCCCCCCe--------EEEEe--eceEcCch-hccCCCc-eecccCC
Confidence 9999999999999999999 65555 55555 68999988 8889888 9999974
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. |
| >TIGR00856 pyrC_dimer dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=311.61 Aligned_cols=326 Identities=18% Similarity=0.207 Sum_probs=254.0
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC--ceEEEEEeeecCCC
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVPEN 79 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 79 (411)
|---|+|+|+++.++ ...+.-+...|||++++|| ++.|..++.+.+..+.+.+.... .+++.+++++.+..
T Consensus 5 ~~~~~~~~~~~~~~~------~~~~~~~~~~~vt~vv~mP-nt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v~~~~ 77 (341)
T TIGR00856 5 RRPDDWHLHLRDGAM------LKAVLPYTSEIFSRAIVMP-NLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTLYLTD 77 (341)
T ss_pred cCccceeeeccCchH------HHHHHHHHHhhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEEECCC
Confidence 445699999997643 3445556778899999999 88888777888887777666555 36888887775433
Q ss_pred ccchHHHHHHHHC-CceEEEEeccCCCCC-CCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccc
Q 015182 80 AYNASALEALLNA-GVLGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRS 156 (411)
Q Consensus 80 ~~~~~~~~~~~~~-g~~~ik~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~ 156 (411)
...++++.++.+. |+.++|+|+...+.. ++...+++.+.+++++++++|+++.+|+++.. .+.. .
T Consensus 78 ~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~-~----------- 145 (341)
T TIGR00856 78 SLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDI-F----------- 145 (341)
T ss_pred CCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCccc-c-----------
Confidence 3356778887766 999999997543221 23344568999999999999999999999852 1110 0
Q ss_pred cccccCCCCHHHHHHHHH-HHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccccc
Q 015182 157 YSTYLKTRPPSWEEAAIR-ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~ 235 (411)
..|..++. .+..++.+. .+.++|++|+++. ++++++++++. ++++++|||||+++.+++
T Consensus 146 ----------~~e~~a~~~~i~~lA~~~------~~~~~~i~H~st~-~~~~~i~~a~~---~vt~E~~ph~L~l~~~~~ 205 (341)
T TIGR00856 146 ----------DREARFIESVLEPLRQRF------PALKVVLEHITTK-DAIDYVEDGNN---RLAATITPQHLMFTRNDL 205 (341)
T ss_pred ----------cchhhhhHHHHHHHHHHc------cCCeEEEEecCcH-HHHHHHHHcCC---CEEEEEcHHHHhccHHHH
Confidence 00222233 333444432 3889999999998 89999988753 399999999999999877
Q ss_pred CC--CCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc
Q 015182 236 PD--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 312 (411)
Q Consensus 236 ~~--~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~-~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 312 (411)
.. ++...+++||+|+..++++||+++.+|.++ +|+|||+|++..+|.. +.++.|++++++.++.++..+ +.
T Consensus 206 ~~~~~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~-----~~~~~G~~g~e~~l~~~~~~~-~~ 279 (341)
T TIGR00856 206 LGGGVNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES-----SCGCAGCFSAPTALPSYAEVF-EE 279 (341)
T ss_pred hccCCCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC-----CCCCCCcccHHHHHHHHHHHH-hc
Confidence 54 578899999999999999999999999999 6999999999877642 247899999999999887654 45
Q ss_pred CCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCcc-CCceEEeEE
Q 015182 313 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKV 383 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~~~v 383 (411)
+++++++++++|.||||+||++ +| +|||+|++ ..|+++.+ .++++.. |+|| .|.+++++|
T Consensus 280 ~~~l~~~v~~~s~nPAk~~gl~-~~------dAdi~~~~--~~~~i~~~-~~~s~~~-~sp~~~~~~~~~~v 340 (341)
T TIGR00856 280 MNALENLEAFCSDNGPQFYGLP-VN------STKIELVK--KEQQIPES-IALTDDT-LVPFRAGETLSWSV 340 (341)
T ss_pred CCCHHHHHHHHhHhHHHHhCCC-CC------CceEEEEe--ccEEeCch-hccCCCC-cccccCCcccceee
Confidence 8999999999999999999994 34 89999994 68999998 8889888 9999 577777766
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes. |
| >PRK09061 D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=330.32 Aligned_cols=343 Identities=22% Similarity=0.242 Sum_probs=253.2
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec----
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV---- 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (411)
+|||||+|+|...++ ..+.++++||||++++..+..|. ...+....+....+|++++.+.+
T Consensus 70 ~PG~ID~H~H~~~~~---------~~~~~~~~GvTtvv~~~~~~~p~------~~~~~~~~~~~~~vn~~~~~~~~~~R~ 134 (509)
T PRK09061 70 APGFIDLHAHGQSVA---------AYRMQAFDGVTTALELEAGVLPV------ARWYAEQAGEGRPLNYGASVGWTPARI 134 (509)
T ss_pred ecCeEeeeeCCCCCc---------cchhhccCCceeEEeeccCCCCH------HHHHHHHHhcCCcceeehhcCcHHHHH
Confidence 699999999987543 25677999999999984233221 11222222333357887765543
Q ss_pred ---C-------------------C-----CccchHHHHHHH----HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 77 ---P-------------------E-----NAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 77 ---~-------------------~-----~~~~~~~~~~~~----~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
. . +.+++.+|.+++ +.|+.++|.+..|. +..+.+++.++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~m~~ll~~al~~Ga~gis~~~~y~-----p~~~~~eL~~l~~~A~ 209 (509)
T PRK09061 135 AVLTGPQAEGTIADFGKALGDPRWQERAATPAELAEILELLEQGLDEGALGIGIGAGYA-----PGTGHKEYLELARLAA 209 (509)
T ss_pred HHhCCcccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHCCCCEEecCCccC-----CCCCHHHHHHHHHHHH
Confidence 1 0 123456666665 48999999865543 2458899999999999
Q ss_pred hCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC----
Q 015182 126 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD---- 201 (411)
Q Consensus 126 ~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~---- 201 (411)
++|.++.+|+++..... ...|..++.++++++++. |.++|++|+++
T Consensus 210 ~~g~~v~~H~e~~~~~~-----------------------~~~e~~av~~~i~lA~~~-------G~rv~IsHlss~g~~ 259 (509)
T PRK09061 210 RAGVPTYTHVRYLSNVD-----------------------PRSSVDAYQELIAAAAET-------GAHMHICHVNSTSLR 259 (509)
T ss_pred HcCCEEEEEecCcccCC-----------------------chhHHHHHHHHHHHHHHh-------CCCEEEEeeccCCcc
Confidence 99999999999854311 123456788999999876 88999999998
Q ss_pred --hHHHHHHHHHHhHCCCCEEEEccccc--------ccccccccCCCCcce---EE---cCCCCC---------------
Q 015182 202 --ASSSLDLLMEAKTNGDSITVETCPHY--------LAFSAEEIPDGDTRF---KC---APPIRD--------------- 250 (411)
Q Consensus 202 --~~~~~~~i~~~~~~g~~i~~~~~p~~--------l~~~~~~~~~~~~~~---~~---~p~lr~--------------- 250 (411)
. +.+++++++++.|++++++++||+ ++++.+....++... ++ .||||+
T Consensus 260 ~~~-~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 338 (509)
T PRK09061 260 DID-RCLALVEKAQAQGLDVTTEAYPYGAGSTVVGAAFFDPGWLERMGLGYGSLQWVETGERLLTREELAKLRANDPGGL 338 (509)
T ss_pred cHH-HHHHHHHHHHHcCCcEEEEecCcchhhhhhcccccCHHHHHHhCCCHHHheehhcccccCCHHHHHHHhccCCCCe
Confidence 6 678999999999999999999999 666544333333332 55 899988
Q ss_pred ----------hhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhh------hHHHHHHHHHHh-c-
Q 015182 251 ----------AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ------FVLPVTWSYGRK-Y- 312 (411)
Q Consensus 251 ----------~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~-~- 312 (411)
..+++.+++.+.++.+ +++|||+|+....|. ++|..++.++.+.+ ..++..++.+.. .
T Consensus 339 ~~~~~~~~~~~~~~~~l~~~l~~p~~-~i~sD~~p~~~~~~~---~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~ 414 (509)
T PRK09061 339 VLIHFLDEDNPRDRALLDRSVLFPGA-AIASDAMPWTWSDGT---VYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERK 414 (509)
T ss_pred EEEEeccCCCCccchhHHHHhCCCCc-eEecCCccccccccc---cccccccccccCCCCCchhhcchHHHHHHHHhhcc
Confidence 4557889999998877 999999999866663 46777777776555 566666665443 3
Q ss_pred CCCHHHHHHHHhHhHHHHhC-----CCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 313 GVTLEQLASWWSERPAKLAG-----QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg-----~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
.+|++++++++|.+||++|| ++++|+|++|+.|||+|||++.. .+.. .+.+ . ++|+.| |.+||
T Consensus 415 ~isl~~ai~~~T~~pA~~lg~~~~~l~~~G~i~~G~~ADlvv~D~~~~--~~~~-~~~~--~-~~~~~g------i~~v~ 482 (509)
T PRK09061 415 ALSLLEAIRKCTLMPAQILEDSVPAMRRKGRLQAGADADIVVFDPETI--TDRA-TFED--P-NRPSEG------VRHVL 482 (509)
T ss_pred cCCHHHHHHHHHHHHHHHhccccccccCCEeeCCCCCcCEEEEchhhc--cccc-cccc--c-CCCCCC------ceEEE
Confidence 49999999999999999999 75579999999999999998852 2222 2211 1 456554 88999
Q ss_pred ECCEEEEEcCccc-CCCCCccccC
Q 015182 388 SRGNLVYKEGNHA-PAACGSPILA 410 (411)
Q Consensus 388 ~~G~~v~~~g~~~-~~~~g~~~~~ 410 (411)
++|++||++|+++ ...+|+.||.
T Consensus 483 v~G~~v~~~g~~~~~~~~G~~lr~ 506 (509)
T PRK09061 483 VNGVPVVSNGELVRDARPGRPVRR 506 (509)
T ss_pred ECCEEEEECCEecCCCCCCeEecC
Confidence 9999999999985 6789999985
|
|
| >PRK05451 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=308.40 Aligned_cols=324 Identities=18% Similarity=0.189 Sum_probs=243.1
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC--CceEEEEEeeecCCC
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPEN 79 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 79 (411)
|--||+|||+++. ..++ ++.++++ .++|++++|| ++.|..++.+.++.+.+.+.+. ..+++.++++++...
T Consensus 8 ~~~~d~h~hl~~~-~~~~-~~~~~~~----~~~t~~v~mP-nt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i~~~~ 80 (345)
T PRK05451 8 RRPDDWHLHLRDG-AMLK-AVVPYTA----RQFGRAIVMP-NLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTD 80 (345)
T ss_pred cCcceEEEecCCc-hHHH-HHHHHHH----HhcCEEEECC-CCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEEEeCC
Confidence 5679999999974 3333 5655555 4599999999 8878777888888877766554 336777766665443
Q ss_pred ccchHHHHHHHHCCc-eEEEEeccCCCC-CCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 80 AYNASALEALLNAGV-LGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~-~~ik~~~~~~~~-~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
...++++.++.+.|+ .++|+|+.+... .+....+++.+..+++.++++|++|.+||++.......
T Consensus 81 ~~~~~El~~~~~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~------------- 147 (345)
T PRK05451 81 NTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDI------------- 147 (345)
T ss_pred CCCHHHHHHHHHCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCccccc-------------
Confidence 334677888888895 599999864211 11122377899999999999999999999984321000
Q ss_pred ccccCCCCHHHHHHHHHHH-HHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 158 STYLKTRPPSWEEAAIREL-LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
.. .|...+.+. .++++++ ++.++|++|+++. +.+++++++ +.+|++|+|||||+++.+++.
T Consensus 148 ----~~----~e~~~~~~~l~~lA~~~------pg~~lhI~Hlst~-~~~e~i~~a---~~~it~Et~ph~L~l~~~~~~ 209 (345)
T PRK05451 148 ----FD----REAVFIDRVLEPLRRRF------PKLKIVFEHITTK-DAVDYVREA---NDNLAATITPHHLLINRNDML 209 (345)
T ss_pred ----cc----chHHHHHHHHHHHHHhc------CCCcEEEEecCcH-HHHHHHHhc---CCCEEEEecHHHHhcCHHHHh
Confidence 00 012233333 3366543 3889999999998 899988776 468999999999999987764
Q ss_pred --CCCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEcCCCCCCChhhhhcccCCccccCCCCchhhh---HHHHHHHHHH
Q 015182 237 --DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVTWSYGR 310 (411)
Q Consensus 237 --~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~-~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~ 310 (411)
..+...+++||||+.+++++||++|.+|.++ +|+|||+|++..+|. .+.|.++++. .++.++..+.
T Consensus 210 ~~~~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~--------~~~G~~gi~~~~~g~~~~~~~~~ 281 (345)
T PRK05451 210 VGGIRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKE--------SACGCAGIFSAPAALELYAEVFE 281 (345)
T ss_pred CCCcCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhC--------CCCCCCchhhHHHHHHHHHHHHH
Confidence 3467799999999999999999999999999 799999999977763 2345555554 4555555544
Q ss_pred hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCcc-CCceEEeEEE
Q 015182 311 KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL 384 (411)
Q Consensus 311 ~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~~~v~ 384 (411)
. +.++++++++++.|||++||+ ++||+|.+| +.+|+++.+ .++++.. |+|| .|.+++++|.
T Consensus 282 ~-~~~l~~~v~~~s~nPAkifGl~~~KG~i~~~----------~~~~~v~~~-~~~s~~~-~sp~~~~~~~~~~~~ 344 (345)
T PRK05451 282 E-AGALDKLEAFASLNGPDFYGLPRNTDTITLV----------REPWTVPES-IPFGDET-VVPFRAGETLRWSVK 344 (345)
T ss_pred c-CCCHHHHHHHHhHHHHHHhCCCCCCCeEEEE----------ecceecCcc-cccCCCc-eeeecCCceeeeEec
Confidence 4 349999999999999999999 889999777 568999988 8888888 9999 6777777764
|
|
| >cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=309.92 Aligned_cols=312 Identities=24% Similarity=0.303 Sum_probs=224.6
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCH------------------------HHHHH
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------------------------ETLKL 56 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~------------------------~~~~~ 56 (411)
+|||||+|+|+..+... ..+++.++++||||+++++.++.|..... +.+..
T Consensus 52 ~PG~iD~H~H~~~~~~~-----~~~~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (415)
T cd01297 52 APGFIDVHTHYDGQVFW-----DPDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAE 126 (415)
T ss_pred ccCEeeeeecCCccccc-----CcchhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHH
Confidence 69999999999875432 23478899999999999873333333222 44455
Q ss_pred HHHHHhcC-CceEEE---EEeeecC---------CCccchHHHHHHH----HCCceEEEEeccCCCCCCCCCCCHHHHHH
Q 015182 57 KVDAAEKR-IYVDVG---FWGGLVP---------ENAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKE 119 (411)
Q Consensus 57 ~~~~~~~~-~~~~~~---~~~~~~~---------~~~~~~~~~~~~~----~~g~~~ik~~~~~~~~~~~~~~~~~~l~~ 119 (411)
+.+..+.. ..+++. ++..+.. .+.+++.+|.+++ +.|+.++|.++.|.. + ...+.+++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~l~~~~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~--~-~~~~~~~l~~ 203 (415)
T cd01297 127 YLDALEARPPAVNVAALVGHAALRRAVMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAP--R-LYAGTAELVA 203 (415)
T ss_pred HHHHHHhcCCCcCeeeccCcHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCC--c-ccCCHHHHHH
Confidence 55555333 478887 4443331 1224466676664 679999998876531 1 1468899999
Q ss_pred HHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcC
Q 015182 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 199 (411)
Q Consensus 120 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~ 199 (411)
+++.|+++|.++.+|+++... .|..++.+++++++++ +.|+|++|+
T Consensus 204 ~~~~a~~~g~~v~~H~e~~~~---------------------------~e~~av~~~~~~a~~~-------g~r~~i~H~ 249 (415)
T cd01297 204 LARVAARYGGVYQTHVRYEGD---------------------------SILEALDELLRLGRET-------GRPVHISHL 249 (415)
T ss_pred HHHHHHHcCCEEEEEECcccc---------------------------cHHHHHHHHHHHHHHh-------CCCEEEEEE
Confidence 999999999999999998642 1335688888888876 889999999
Q ss_pred CChHHH---------HHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 200 SDASSS---------LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 200 ~~~~~~---------~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
++. .. ++++++++++|++++++++|+++++ ...++++++ +.+++++
T Consensus 250 ss~-~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~-----------------------~~~~~~l~~-~~~~~i~ 304 (415)
T cd01297 250 KSA-GAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGS-----------------------EDDVRRIMA-HPVVMGG 304 (415)
T ss_pred ecC-CCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCc-----------------------HHHHHHHHc-CCCceee
Confidence 987 67 8999999999999999999977643 122233333 4899999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-Hhc-CCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEE
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKY-GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 348 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~-~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlv 348 (411)
|||+|.+. +....+ + .++.++..+ ... .++++++++++|.|||++||++++|+|++|++||||
T Consensus 305 SDh~~~~~--------~~~~~~-~------~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~G~l~~G~~ADlv 369 (415)
T cd01297 305 SDGGALGK--------PHPRSY-G------DFTRVLGHYVRERKLLSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIV 369 (415)
T ss_pred eCCCcCCC--------CCcchh-C------CHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhCCCCCceeCCCCCCCEE
Confidence 99998641 011111 1 144455433 334 499999999999999999999657999999999999
Q ss_pred EEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCCCCCc
Q 015182 349 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGS 406 (411)
Q Consensus 349 v~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~~~g~ 406 (411)
|||++.....+. ++++.. ....|.+||++|++||++|+++..++|+
T Consensus 370 v~d~~~~~~~~~----------~~~~~~--~~~~v~~viv~G~~v~~~~~~~~~~~G~ 415 (415)
T cd01297 370 VFDPDTLADRAT----------FTRPNQ--PAEGIEAVLVNGVPVVRDGAFTGARPGR 415 (415)
T ss_pred EEcccccccccc----------hhhhcc--CCCCceEEEECCEEEEECCEECCCCCCC
Confidence 999885433222 222211 1346999999999999999999888885
|
|
| >PLN02599 dihydroorotase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=279.93 Aligned_cols=291 Identities=20% Similarity=0.213 Sum_probs=220.7
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC--CceEEEEEeeecCCC
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR--IYVDVGFWGGLVPEN 79 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 79 (411)
|---|+|+|+++.. +....--+.++|+|++++|| |+.|+.++.+.++.+++++... ..+++.+++++....
T Consensus 26 ~~~~d~h~hlr~~~------~~~~~~~~~~gg~t~~i~MP-n~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l~lt~ 98 (364)
T PLN02599 26 TRPDDWHLHLRDGA------KLAAVVPHSARHFGRAIVMP-NLKPPVTTTARALAYRERIMKALPPGSSFEPLMTLYLTD 98 (364)
T ss_pred cCCcceeeEccCcH------HHHhhhHHhcCCcCEEEECC-CCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEEecCC
Confidence 44569999999753 33445556899999999999 8889999999999888777666 458999887662221
Q ss_pred ccchHHHHHHHHCCce-EEEEeccCCCCC-CCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 80 AYNASALEALLNAGVL-GLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~-~ik~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
...++++.++.+.|+. +||+|+...+.+ +....+.+.+..+++++++.|+++.+|+++.+......
T Consensus 99 ~~~l~Ei~~~~~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~------------ 166 (364)
T PLN02599 99 NTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIF------------ 166 (364)
T ss_pred CCCHHHHHHHHHCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCccccccc------------
Confidence 1346778888888998 999998643322 22233468999999999999999999999854311000
Q ss_pred ccccCCCCHHHHHHHHHHHHH--HHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccccc
Q 015182 158 STYLKTRPPSWEEAAIRELLT--VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~ 235 (411)
.+ |...+.++++ +++. .+.++|++|+|+. ++++++++++. + ++++++|||||+++.+++
T Consensus 167 -----~~----E~~~i~r~l~~~la~~-------~g~kI~i~HiSt~-~~ve~v~~ak~-~-~vtae~tpHhL~l~~~~~ 227 (364)
T PLN02599 167 -----DR----EKVFIDTILAPLVQKL-------PQLKIVMEHITTM-DAVEFVESCGD-G-NVAATVTPQHLLLNRNAL 227 (364)
T ss_pred -----cc----HHHHHHHHHHHHHHhc-------cCCeEEEEecChH-HHHHHHHhccC-C-CEEEEecHHHHhcCHHHH
Confidence 01 2223445552 4443 4899999999998 89999998874 3 799999999999998876
Q ss_pred C--CCCcceEEcCCCCChhhHHHHHHHHhcCCc-cEEcCCCCCCChhhhhcccCCccccCCCCchhhh---HHHHHHHHH
Q 015182 236 P--DGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVTWSYG 309 (411)
Q Consensus 236 ~--~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~-~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~---~~~~~~~~~ 309 (411)
. .+++..+++||+|+..++++||+++.+|.+ ++|+|||+|++...|. .++|.+|++. .++.+....
T Consensus 228 ~~~~~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~--------~~~g~~Gi~~~~~~l~~l~~~~ 299 (364)
T PLN02599 228 FQGGLQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKE--------ASCGCAGIYSAPVALSLYAKAF 299 (364)
T ss_pred hccCCCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhc--------CCCCCCCcccHHHHHHHHHHHH
Confidence 5 346778999999999999999999999996 7999999999876663 2345555543 577655555
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCCC-CCCcc
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQV-SKGAI 339 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~~-~~G~I 339 (411)
.+.+ +++++++.+|.|||+++|++ ++|+|
T Consensus 300 ~~~g-~l~~l~~~~S~npA~~~gL~~~kg~i 329 (364)
T PLN02599 300 EEAG-ALDKLEAFTSFNGPDFYGLPRNTSTI 329 (364)
T ss_pred HhcC-CHHHHHHHHhHHHHHHhCCCCCCCeE
Confidence 5556 99999999999999999994 67764
|
|
| >PRK15446 phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=255.38 Aligned_cols=311 Identities=24% Similarity=0.278 Sum_probs=208.0
Q ss_pred CCceeecccccC----CCC----CCccCChHHHHHHHHcCCceeEecCCCCCC-C--C---CCCHHHHHHHHH--HHhcC
Q 015182 1 MPGLIDVHAHLD----DPG----RTEWEGFPSGTKAAAAGGITTLIDMPLNSD-P--S---TISTETLKLKVD--AAEKR 64 (411)
Q Consensus 1 lPGlID~H~H~~----~~~----~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~-~--~---~~~~~~~~~~~~--~~~~~ 64 (411)
+|||||+|+|.. .|. +...+++.+++++++++||||+.||..+.. | . ....+.+..+.+ ...++
T Consensus 51 ~PG~ID~H~h~~~~~~~p~~~~~~~~~~~~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (383)
T PRK15446 51 LPGLVDLHTDNLEKHLAPRPGVDWPADAALAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGL 130 (383)
T ss_pred EeCeEEcccCCcccccCCCCCCccchHHHHHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCc
Confidence 699999999543 232 123378999999999999999999852332 2 1 111123334444 34467
Q ss_pred CceEEEEEeeecCCCccchHHHHHHHHCCceEEEEeccCC-CCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchh
Q 015182 65 IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 143 (411)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~ 143 (411)
+.+|+++|..+...+.+.++++.++.+.|+.++|.||+.. +...++ ..+.+++.. +++.| .+|++......+
T Consensus 131 ~~vD~~~h~~~~~~~~~~~~~l~~~~~~g~~~~k~fm~~~p~~~~~~--~~~~~~~~~--~~~~g---~~~~e~~~~~~~ 203 (383)
T PRK15446 131 LRADHRLHLRCELTNPDALELFEALLAHPRVDLVSLMDHTPGQRQFR--DLEKYREYY--AGKYG---LSDEEFDAFVEE 203 (383)
T ss_pred hhccceeEEEEEecCcchHHHHHHHhcCCCcCEEEEeCCCCcccccc--CHHHHHHHH--HhhcC---CCHHHHHHHHHH
Confidence 7899999998865555667888889999999999999865 222222 334454444 45777 789888665432
Q ss_pred hhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEc
Q 015182 144 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 223 (411)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~ 223 (411)
.. .+|...+...++.+++.+++. |.++ ..|... ..+.++.+++.|+.++ +
T Consensus 204 ~~-----------------~~~~~~~~e~i~~~v~~A~~~-------g~~v-~sH~~~---~~~~i~~a~~~Gv~~~-e- 253 (383)
T PRK15446 204 RI-----------------ALSARYAPPNRRAIAALARAR-------GIPL-ASHDDD---TPEHVAEAHALGVAIA-E- 253 (383)
T ss_pred HH-----------------HhHhhcCHHHHHHHHHHHHHC-------CCce-eecCCC---CHHHHHHHHHcCCcee-e-
Confidence 21 124444556788999999876 7777 568732 2246777878888665 2
Q ss_pred ccccccccccccCCCCcceEEc-C-CCCC--hhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhh
Q 015182 224 CPHYLAFSAEEIPDGDTRFKCA-P-PIRD--AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299 (411)
Q Consensus 224 ~p~~l~~~~~~~~~~~~~~~~~-p-~lr~--~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~ 299 (411)
.|.....- ..+.+.+...... | ++|. ......+++++++|++++++||+.|...
T Consensus 254 ~~~~~e~~-~~~~~~g~~v~~~~p~~~r~~~~~~~~~~~~~~~~Gv~~~lgSD~~p~~~--------------------- 311 (383)
T PRK15446 254 FPTTLEAA-RAARALGMSVLMGAPNVVRGGSHSGNVSALDLAAAGLLDILSSDYYPASL--------------------- 311 (383)
T ss_pred CCCcHHHH-HHHHHCCCEEEeCCcccccCCcccchHhHHHHHHCCCcEEEEcCCChhhH---------------------
Confidence 12111000 0111122222222 2 3454 3456788999999999999999865421
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE
Q 015182 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 379 (411)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~ 379 (411)
+...+......+++++++++++|.|||+++|++++|+|++|+.|||+|||.+. .
T Consensus 312 --~~~~~~~~~~~gls~~~al~~~T~npA~~lgl~~~G~I~~G~~ADlvv~d~~~------~------------------ 365 (383)
T PRK15446 312 --LDAAFRLADDGGLDLPQAVALVTANPARAAGLDDRGEIAPGKRADLVRVRRAG------G------------------ 365 (383)
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCCCCCcCcCCCCcCCEEEEcCCC------C------------------
Confidence 11223334566899999999999999999999556999999999999999761 1
Q ss_pred EeEEEEEEECCEEEEEc
Q 015182 380 SGKVLATISRGNLVYKE 396 (411)
Q Consensus 380 ~~~v~~ti~~G~~v~~~ 396 (411)
...|..||++|++||+.
T Consensus 366 ~~~v~~v~~~G~~v~~~ 382 (383)
T PRK15446 366 LPVVRAVWRGGRRVFLA 382 (383)
T ss_pred CcchheEEECCEEEEeC
Confidence 01478899999999975
|
|
| >TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=254.89 Aligned_cols=309 Identities=25% Similarity=0.316 Sum_probs=214.1
Q ss_pred CCceeecccccCC------CCCCcc---CChHHHHHHHHcCCceeEecCCCCC--CCCCCCHHHHHHHH---HHHhcC--
Q 015182 1 MPGLIDVHAHLDD------PGRTEW---EGFPSGTKAAAAGGITTLIDMPLNS--DPSTISTETLKLKV---DAAEKR-- 64 (411)
Q Consensus 1 lPGlID~H~H~~~------~~~~~~---~~~~~~~~~a~~~GvTtv~d~~~~~--~~~~~~~~~~~~~~---~~~~~~-- 64 (411)
+|||||+|+|..+ |+. .+ +.+.++.++++++||||++||+.+. .|.....+.++.+. +..+++
T Consensus 47 ~PGlID~H~h~~e~~~~prp~~-~~~~~~~~~~~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (376)
T TIGR02318 47 LPGLIDLHTDNLERHMSPRPGV-DWPIDAAIVEHDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGL 125 (376)
T ss_pred eccEEEcccCccccCcCCCCCC-CcchHHHHHHHHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCc
Confidence 6999999999977 554 34 7788999999999999999998433 34556677777776 555545
Q ss_pred CceEEEEEeeecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh
Q 015182 65 IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 144 (411)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 144 (411)
+.+++.+|....-..++.++++..+.+.|+.++|.||+..+ ..++..+.+.+.+.+.. +.| .+|++....+.+.
T Consensus 126 ~~~d~~~h~~~e~~~~~~~~~l~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~ 199 (376)
T TIGR02318 126 LRADHRLHLRCELPNEEVLPELEELIDDPRVDLISLMDHTP-GQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEER 199 (376)
T ss_pred hhhhceeEEEEEecCccHHHHHHHHhcCCCcCEEEEeCCCC-CcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHH
Confidence 78999999887433445677888888899999999998764 23345677777666654 566 7899887654433
Q ss_pred hhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcc
Q 015182 145 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETC 224 (411)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~ 224 (411)
..+.+ . . ....+..+++++++. |.++ ..|... ..+.++++++.|+.+. +.
T Consensus 200 ~~~~~------~-------~----~~e~i~~~v~~A~~~-------G~~v-~sH~~~---~~e~i~~a~~~Gv~~~-E~- 249 (376)
T TIGR02318 200 IARRA------E-------Y----GLANRSEIAALARAR-------GIPL-ASHDDD---TPEHVAEAHDLGVTIS-EF- 249 (376)
T ss_pred HHHHh------h-------c----cHHHHHHHHHHHHHC-------CCeE-EEecCC---CHHHHHHHHHCCCChh-cc-
Confidence 22111 0 0 124677888888876 7777 668742 2356777777787432 21
Q ss_pred cccccccccccCCCCcc-eEEcC-CCCChhh--HHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhh
Q 015182 225 PHYLAFSAEEIPDGDTR-FKCAP-PIRDAAN--KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300 (411)
Q Consensus 225 p~~l~~~~~~~~~~~~~-~~~~p-~lr~~~~--~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~ 300 (411)
|..... .+.+.+.|.. ..+.| ++|...+ ...+|+++++|++++++|||.|...
T Consensus 250 ~~t~e~-a~~~~~~G~~v~~~~p~~~r~~~~~~~~~l~~~~~~G~~~~l~SD~~p~~~---------------------- 306 (376)
T TIGR02318 250 PTTLEA-AKEARSLGMQILMGAPNIVRGGSHSGNLSARELAHEGLLDVLASDYVPASL---------------------- 306 (376)
T ss_pred CCCHHH-HHHHHHcCCeEEECCccccccccccchHHHHHHHHCCCcEEEEcCCCcHHH----------------------
Confidence 111100 0111223433 22334 4665544 6789999999999999999976421
Q ss_pred HHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE
Q 015182 301 VLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 379 (411)
Q Consensus 301 ~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~ 379 (411)
+...+.... ..+++++++++++|.|||+++|++++|+|++|++|||++||... . .
T Consensus 307 -l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~~~G~I~~G~~ADlvvvd~~~--------~--------~------- 362 (376)
T TIGR02318 307 -LLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLSDRGSIAPGKRADLVRVHRVD--------G--------V------- 362 (376)
T ss_pred -HHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCCCCCcCCCCCcccEEEEcCCC--------C--------C-------
Confidence 122222323 34799999999999999999999768999999999999999631 0 0
Q ss_pred EeEEEEEEECCEEEE
Q 015182 380 SGKVLATISRGNLVY 394 (411)
Q Consensus 380 ~~~v~~ti~~G~~v~ 394 (411)
..|..||++|++||
T Consensus 363 -~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 363 -PRIRAVWRAGRRVY 376 (376)
T ss_pred -ccceEEEECCEEeC
Confidence 15789999999986
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. |
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=232.24 Aligned_cols=297 Identities=23% Similarity=0.289 Sum_probs=186.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHh---cCCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE---KRIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|+..++... ..+....++++||||++|++ ... ..+.+.+.......+ .+.++.+.++.....
T Consensus 55 ~PGliD~H~H~~~~g~~~---~~~~~~~~l~~G~Ttv~d~g-~~~--~~~~~~~~~~~~a~~~~gira~l~~~~~~~~~~ 128 (379)
T PRK12394 55 TPGLIDYHAHVFYDGTEG---GVRPDMYMPPNGVTTVVDAG-SAG--TANFDAFYRTVICASKVRIKAFLTVSPPGQTWS 128 (379)
T ss_pred ECCEEEeeecCCCCCccc---ccCHHHHHHhCCccEEEECC-CCC--cccHHHHHHHHhhhhcceeeeEEeeeccccccc
Confidence 699999999997654322 23345678999999999998 332 244555555432222 122333333322110
Q ss_pred ---CC-c-c--chHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhh
Q 015182 78 ---EN-A-Y--NASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL 147 (411)
Q Consensus 78 ---~~-~-~--~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 147 (411)
+. . . ..+++.++.+ .++.++|+++..... ..++++.+++.++.|+++|+++++|+.+....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ki~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~------ 199 (379)
T PRK12394 129 GYQENYDPDNIDENKIHALFRQYRNVLQGLKLRVQTEDI---AEYGLKPLTETLRIANDLRCPVAVHSTHPVLP------ 199 (379)
T ss_pred CcccccChhHCCHHHHHHHHHHCcCcEEEEEEEEecccc---cccchHHHHHHHHHHHHcCCCEEEEeCCCCcc------
Confidence 00 1 1 1245555543 467888987654321 14578999999999999999999999875321
Q ss_pred ccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEc-------CCChHHHHHHHHHHhHCCCCEE
Q 015182 148 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH-------LSDASSSLDLLMEAKTNGDSIT 220 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h-------~~~~~~~~~~i~~~~~~g~~i~ 220 (411)
..+++.+.... ..-.|+.| .+.. ...+.++.++++|+.+.
T Consensus 200 -------------------------~~~~~~~l~~g-------~~~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~ 246 (379)
T PRK12394 200 -------------------------MKELVSLLRRG-------DIIAHAFHGKGSTILTEEG-AVLAEVRQARERGVIFD 246 (379)
T ss_pred -------------------------HHHHHHhcCCC-------CEEEecCCCCCCCcCCCCC-CChHHHHHHHhCCeEEE
Confidence 11122222110 12223322 2222 23566677777785332
Q ss_pred EEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhh
Q 015182 221 VETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299 (411)
Q Consensus 221 ~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~ 299 (411)
+. ++ +...+.+.+++++++|. +++||||+.+.+... +++
T Consensus 247 ~~-~g-----------------------~s~~~~~~~~~~l~~G~~~~~lgTD~~~~~~~~-----~~~----------- 286 (379)
T PRK12394 247 AA-NG-----------------------RSHFDMNVARRAIANGFLPDIISSDLSTITKLA-----WPV----------- 286 (379)
T ss_pred ec-CC-----------------------ccccchHHHHHHHHCCCCceEEECCCCCCCccc-----Ccc-----------
Confidence 21 11 11123567788899995 899999998765211 111
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCC-CCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCce
Q 015182 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 378 (411)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~-~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~ 378 (411)
..+..+++.....+++++++++++|.|||+++|++ ++|+|++|+.|||+++|.+.++.. .. + +.|..
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~at~~~a~~~g~~~~~G~i~~G~~ADl~~~~~~~~~~~-~~-d----------~~g~~ 354 (379)
T PRK12394 287 YSLPWVLSKYLALGMALEDVINACTHTPAVLMGMAAEIGTLAPGAFADIAIFKLKNRHVE-FA-D----------IHGET 354 (379)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCccCEEEEecCcCcce-ec-c----------CCCCE
Confidence 13344455555678999999999999999999994 789999999999999998876542 22 2 23444
Q ss_pred EEe----EEEEEEECCEEEEEcC
Q 015182 379 LSG----KVLATISRGNLVYKEG 397 (411)
Q Consensus 379 ~~~----~v~~ti~~G~~v~~~g 397 (411)
+.+ .|..||++|++||++-
T Consensus 355 ~~~~~~~~v~~t~v~G~~v~~~~ 377 (379)
T PRK12394 355 LTGTHVLVPQMTIKSGEILYRQI 377 (379)
T ss_pred EEeeeecceEEEEECCEEEEecC
Confidence 555 7999999999999864
|
|
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-28 Score=233.75 Aligned_cols=233 Identities=17% Similarity=0.137 Sum_probs=147.3
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
|+..+|+++++.. ...++++++.++++.|+++|+++.+|+.+... .+......| ..
T Consensus 175 ~~~~~k~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~-------------~~------- 231 (411)
T cd01298 175 ADGRIRVALAPHA---PYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLEKYG-------------KR------- 231 (411)
T ss_pred CCCceEEEEeCCC---CccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhC-------------CC-------
Confidence 4677898876542 12468899999999999999999999866432 211111100 00
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
.+ +.+.+.+ ..+.++.+.|++.. +.+.++.+++.|+ .+.+||...+. .+ ...+|
T Consensus 232 ~~----~~~~~~~----~~~~~~~i~H~~~l--~~~~~~~l~~~gi--~~~~~p~~~~~-------~~---~~~~~---- 285 (411)
T cd01298 232 PV----EYLEELG----LLGPDVVLAHCVWL--TDEEIELLAETGT--GVAHNPASNMK-------LA---SGIAP---- 285 (411)
T ss_pred HH----HHHHHcC----CCCCCeEEEEecCC--CHHHHHHHHHcCC--eEEEChHHhhh-------hh---hCCCC----
Confidence 11 1111211 12567778888765 3355667777775 55678864211 01 01122
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHH
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPA 328 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A 328 (411)
+++++++|+.+++|||+.+.... .++| .+..+...+.... +.+++++++++++|.|||
T Consensus 286 -----~~~~~~~Gv~~~~GsD~~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A 346 (411)
T cd01298 286 -----VPEMLEAGVNVGLGTDGAASNNN-----LDMF---------EEMRLAALLQKLAHGDPTALPAEEALEMATIGGA 346 (411)
T ss_pred -----HHHHHHCCCcEEEeCCCCccCCC-----cCHH---------HHHHHHHHHhccccCCCCcCCHHHHHHHHHhhHH
Confidence 34567889999999997432110 0111 1112211111111 136999999999999999
Q ss_pred HHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 329 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 329 ~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+++|++++|+|++|+.|||+|+|.+.++.++.+ +++++.. +.+ ..++|..||++|++||++|+++
T Consensus 347 ~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~~-----~~~~v~~v~~~G~~v~~~~~~~ 411 (411)
T cd01298 347 KALGLDEIGSLEVGKKADLILIDLDGPHLLPVH-DPISHLV-YSA-----NGGDVDTVIVNGRVVMEDGELL 411 (411)
T ss_pred HHhCCccCCCcCCCccCCEEEEeCCCCccCCcc-chhhHhe-Eec-----CCCCeeEEEECCEEEEECCEeC
Confidence 999997689999999999999999977666655 4443221 122 1468999999999999998764
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=222.23 Aligned_cols=276 Identities=21% Similarity=0.103 Sum_probs=165.0
Q ss_pred CCceeecccccCCCCCCccC-----------ChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCce-
Q 015182 1 MPGLIDVHAHLDDPGRTEWE-----------GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYV- 67 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~-----------~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 67 (411)
+|||||+|+|+..+...... ......+.++++|||||+|++ +..+ .. ++...+.... ..++
T Consensus 12 ~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g-~~~~----~~-~~~~~~~g~~~gPr~~ 85 (342)
T cd01299 12 MPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAG-GADY----GL-LRDAIDAGLIPGPRVF 85 (342)
T ss_pred CCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCC-Ccch----HH-HHHHHHcCCccCCcee
Confidence 79999999998654321111 112467889999999999998 3211 11 3332222111 0111
Q ss_pred -------------EEEEE--------eeecCCCc-cchHHHHHHHHCCceEEEEeccCCC-----CCCCCCCCHHHHHHH
Q 015182 68 -------------DVGFW--------GGLVPENA-YNASALEALLNAGVLGLKSFMCPSG-----INDFPMTNASHIKEG 120 (411)
Q Consensus 68 -------------~~~~~--------~~~~~~~~-~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~~~~~~~l~~~ 120 (411)
++.+. ......+. +....++++++.|++.||+|+++.. ..+...++.++++++
T Consensus 86 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~ 165 (342)
T cd01299 86 ASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAI 165 (342)
T ss_pred ecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHH
Confidence 11100 00000111 2245677778889999999987531 112236789999999
Q ss_pred HHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC
Q 015182 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 200 (411)
Q Consensus 121 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~ 200 (411)
++.|+++|+++.+|+.+... +..+++. |.. .++|+.
T Consensus 166 ~~~A~~~g~~v~~H~~~~~~--------------------------------i~~~l~~-----------G~~-~i~H~~ 201 (342)
T cd01299 166 VDEAHKAGLYVAAHAYGAEA--------------------------------IRRAIRA-----------GVD-TIEHGF 201 (342)
T ss_pred HHHHHHcCCEEEEEeCCHHH--------------------------------HHHHHHc-----------CCC-EEeecC
Confidence 99999999999999987532 2222221 222 478887
Q ss_pred ChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCC-------ChhhHHHHHHHHhcCCccEEcCCC
Q 015182 201 DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR-------DAANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 201 ~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr-------~~~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
.. +.+.++.++++|+.+ ..||........... ....++.. .......+..+++.|+.+++|||.
T Consensus 202 ~~--~~~~~~~l~~~g~~~--~~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GTD~ 272 (342)
T cd01299 202 LI--DDETIELMKEKGIFL--VPTLATYEALAAEGA-----APGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGTDA 272 (342)
T ss_pred CC--CHHHHHHHHHCCcEE--eCcHHHHHHHHhhcc-----ccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 65 346677777888644 355543211000000 00001000 001224555667789999999996
Q ss_pred CCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcC
Q 015182 274 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEP 352 (411)
Q Consensus 274 ~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~ 352 (411)
..... .+ . .+...+....+.+++++++++++|.|||+++|+ +++|+|++||.|||+|+|.
T Consensus 273 ~~~~~--------------~~---~--~~~~e~~~~~~~~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~ADlvvl~~ 333 (342)
T cd01299 273 GFPVP--------------PH---G--WNARELELLVKAGGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDG 333 (342)
T ss_pred CCCCC--------------ch---h--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCCEEEECC
Confidence 32000 01 0 011112234567899999999999999999999 6789999999999999997
Q ss_pred CC
Q 015182 353 EA 354 (411)
Q Consensus 353 ~~ 354 (411)
|+
T Consensus 334 ~p 335 (342)
T cd01299 334 DP 335 (342)
T ss_pred Ch
Confidence 74
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK13206 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=221.08 Aligned_cols=297 Identities=24% Similarity=0.284 Sum_probs=182.1
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC----CCCCCCCCHH--HHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTE--TLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+. .++++++||||+++++. ++.+...+.. .+..+.+..+ ...+++.+++.
T Consensus 134 ~PG~ID~HVH~~~Pg~---------~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~-~~pvn~g~~g~ 203 (573)
T PRK13206 134 TAGAIDCHVHFICPQI---------VDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALD-GWPVNVALLGK 203 (573)
T ss_pred EeCEEeeeeccCCchH---------HHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhh-cCceeEEEecC
Confidence 6999999999987752 38899999999999742 1222212222 3334444333 46789988863
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. +....+++.++++.|+.+||++.+| ..+++.+.+++++|+++|+++.+|++.-... ++
T Consensus 204 g---~~~~~~~L~el~~aGA~GfKi~~d~-------g~t~~~i~~aL~~A~~~gv~V~iHadtlne~--g~--------- 262 (573)
T PRK13206 204 G---NTVSAEALWEQLRGGAGGFKLHEDW-------GSTPAAIDACLRVADAAGVQVALHSDTLNEA--GF--------- 262 (573)
T ss_pred c---CcCCHHHHHHHHHCCCcEEeecCcc-------CCCHHHHHHHHHHHHHhCCEEEEECCCcccc--ch---------
Confidence 2 2223457888889999999997543 3688999999999999999999999975421 10
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
++..+..+ .|..+|++|...+- ..-++|+.+...++ +-++++|..-|.-
T Consensus 263 ------------------~E~t~aa~---------~gr~iH~~H~egaggghapd~~~~~~~~n~-lp~stnpt~p~~~- 313 (573)
T PRK13206 263 ------------------VEDTLAAI---------AGRSIHAYHTEGAGGGHAPDIITVASHPNV-LPSSTNPTRPHTV- 313 (573)
T ss_pred ------------------hhHHHHHh---------cCCeEEEEeccCCCcCcccHHHHhcCCCCC-cCCCCCCCCCCcc-
Confidence 11212222 28899999987530 24577777755443 3344555432211
Q ss_pred cccCC-CCcce---EEcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCC
Q 015182 233 EEIPD-GDTRF---KCAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295 (411)
Q Consensus 233 ~~~~~-~~~~~---~~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~ 295 (411)
.-+.+ +.-.. ...|. +|.. ...+.| ++.|++.+++||......... ...++|.
T Consensus 314 nt~~e~~~m~m~~h~l~~~~~~d~~fa~srir~~ti~ae~~l---~d~G~~~~~~SDs~~~~~~~e-~~~~~~q------ 383 (573)
T PRK13206 314 NTLDEHLDMLMVCHHLNPAVPEDLAFAESRIRPSTIAAEDVL---HDMGAISMIGSDSQAMGRIGE-VVLRTWQ------ 383 (573)
T ss_pred cchhhhhCeEEeeccCCCCCcchhhhhhhhccceeeccCchH---hhCCcEEeccCCccccccccc-hhhhHHH------
Confidence 00000 00000 00111 1111 011222 455999999999643111000 0001110
Q ss_pred chhhhHHHHHHH-H------HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccC
Q 015182 296 SSLQFVLPVTWS-Y------GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 367 (411)
Q Consensus 296 ~~~~~~~~~~~~-~------~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~ 367 (411)
....+.. . ..++.++++++|+++|.|||+++|+ +++|+|++||.||||+||++. +
T Consensus 384 -----~a~~~~~rr~~l~g~~~~~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~-f----------- 446 (573)
T PRK13206 384 -----TAHVMKRRRGALPGDGRADNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAF-F----------- 446 (573)
T ss_pred -----HHHHHHhccCCCCCCCcccchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECccc-c-----------
Confidence 0000000 0 0134589999999999999999999 679999999999999999651 1
Q ss_pred CCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 368 HPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 368 ~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
..++..|+++|+++|..
T Consensus 447 ------------~~~~~~ti~~G~iv~~~ 463 (573)
T PRK13206 447 ------------GVRPHAVLKGGAIAWAA 463 (573)
T ss_pred ------------CCCccEEEECCEEEEec
Confidence 12467899999999986
|
|
| >cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-26 Score=217.91 Aligned_cols=299 Identities=24% Similarity=0.302 Sum_probs=182.9
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC------CCCCCCCCHHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|++ .++++++||||+++++. ++.+.......+..+.+.++ ...+++.++..
T Consensus 128 ~PG~ID~HvH~~~P~~---------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~-~~pin~g~~gk 197 (567)
T cd00375 128 TAGGIDTHVHFICPQQ---------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAAD-GLPVNIGFLGK 197 (567)
T ss_pred eeceEECccCCCCccH---------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhh-cCCceEEEEec
Confidence 6999999999987743 47899999999999731 22233344567777766655 34688888753
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ..+.+.++.++.+.|+.+||++.+| ..++..+.+++++|+++|.++.+|++.-... +
T Consensus 198 g---~~~~l~eL~e~~~aGA~GfK~~eD~-------g~t~~~i~~aL~~A~~~dv~VaiHadtlne~--g---------- 255 (567)
T cd00375 198 G---NGSSPDALAEQIEAGACGLKLHEDW-------GATPAAIDTCLSVADEYDVQVAIHTDTLNES--G---------- 255 (567)
T ss_pred C---ccccHHHHHHHHHcCCEEEEecCCC-------CCCHHHHHHHHHHHHhhCCEEEEECCCCCcc--h----------
Confidence 2 2245677888888999999987644 2478999999999999999999999974321 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
-++..+... .|..+|++|....- ..-++++.+...++ +-.+++|..-|.-
T Consensus 256 -----------------~~E~t~aa~---------~gr~iH~~H~egaggghapdi~~~~~~~nv-lp~stnpt~p~t~- 307 (567)
T cd00375 256 -----------------FVEDTIAAI---------KGRTIHTYHTEGAGGGHAPDIIKVAGHPNV-LPSSTNPTRPFTV- 307 (567)
T ss_pred -----------------HHHHHHHHh---------cCCeEEEEecCCCCcccchHHHHhcCCCCc-ccCCCCCCCCCcc-
Confidence 122222222 28889999987530 24466666654443 3344555432211
Q ss_pred cccCC-CCcceE---EcCC-----------CCChhhHHHHHHHH-hcCCccEEcCCCCCCChhhhhcccCCccccCCCCc
Q 015182 233 EEIPD-GDTRFK---CAPP-----------IRDAANKEKLWEAL-MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296 (411)
Q Consensus 233 ~~~~~-~~~~~~---~~p~-----------lr~~~~~~~l~~~l-~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~ 296 (411)
.-+.+ +.-... ..|. +|... .+.-+.| +.|++.+++||....... ...+.
T Consensus 308 nt~~e~~dm~m~~h~l~~~~~~d~~fa~srir~~t--i~ae~~l~d~G~~s~~~sDs~~mgr~------------ge~~~ 373 (567)
T cd00375 308 NTLDEHLDMLMVCHHLDPNIPEDVAFAESRIRAET--IAAEDVLHDLGAISIMSSDSQAMGRV------------GEVIL 373 (567)
T ss_pred CchhhhcCeEEeecCCCCCCcchhhhhhhhccchh--hccchhhhccCcEEEEccchhhcCcc------------ceeee
Confidence 00000 000000 0111 11110 0111112 349999999996422100 00001
Q ss_pred hhhhHHHHHHHHHHhcC--------CCH---HHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCc
Q 015182 297 SLQFVLPVTWSYGRKYG--------VTL---EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPV 364 (411)
Q Consensus 297 ~~~~~~~~~~~~~~~~~--------l~~---~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~ 364 (411)
.+ .........+.| .+- .+.|+++|.|||+++|+ +++|+|++||.||||||+++.
T Consensus 374 r~---~q~a~k~~~~~g~~~~~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~---------- 440 (567)
T cd00375 374 RT---WQTAHKMKAQRGPLPEDSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAF---------- 440 (567)
T ss_pred ch---HHHHHHHHHhcCCCCcccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCcc----------
Confidence 00 011111112223 233 44599999999999999 779999999999999999651
Q ss_pred ccCCCCCCccCCceEEeEEEEEEECCEEEEEc-Cccc
Q 015182 365 HMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA 400 (411)
Q Consensus 365 ~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~-g~~~ 400 (411)
| ..++..||++|++||.. |...
T Consensus 441 ---------f-----~~~p~~vi~~G~iv~~~~gd~n 463 (567)
T cd00375 441 ---------F-----GVKPEMVLKGGFIAYAQMGDPN 463 (567)
T ss_pred ---------c-----CCCeeEEEECCEEEEecCCCcc
Confidence 1 12468999999999997 6544
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. |
| >PRK13985 ureB urease subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=220.10 Aligned_cols=290 Identities=25% Similarity=0.337 Sum_probs=179.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC----CCCCCCCCHH--HHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTE--TLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+. .+.|+++||||+++++. ++.|...+.. .+..+.+.++. ..+++.++..
T Consensus 128 ~PG~ID~HvH~~~P~~---------~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~-~pvn~gf~gk 197 (568)
T PRK13985 128 TAGGIDTHIHFISPQQ---------IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEE-YSMNLGFLGK 197 (568)
T ss_pred EeCEEEeeCCCCCccH---------HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhc-cCccEEEecC
Confidence 5999999999987753 24699999999999531 3444333222 24555554443 3588887753
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ....++++.++++.|+.+||++.++ ..++..+.+++++|++++.+|.+|++......
T Consensus 198 G---~~~~l~eL~el~~aGA~GfK~~ed~-------g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g------------ 255 (568)
T PRK13985 198 G---NSSNDASLADQIEAGAIGFKIHEDW-------GTTPSAINHALDVADKYDVQVAIHTDTLNEAG------------ 255 (568)
T ss_pred C---ccCCHHHHHHHHHcCCEEEEECCcc-------CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCch------------
Confidence 2 2234667888888999999986433 35789999999999999999999999754210
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
-++..++.. .|..+|++|.... -..-++|+.+...++ +-++++|..-|.-
T Consensus 256 -----------------~~E~t~aa~---------~gr~iH~~H~egaggghapdi~~~~~~~nv-lp~stnpt~p~t~- 307 (568)
T PRK13985 256 -----------------CVEDTMAAI---------AGRTMHTFHTEGAGGGHAPDIIKVAGEHNI-LPASTNPTIPFTV- 307 (568)
T ss_pred -----------------hhHHHHHHh---------cCCeEEEEeccCCCccchhhHHHHcCCCCc-ccCCCCCCCCCcc-
Confidence 012222222 2888999998753 034577777654443 3344555322211
Q ss_pred cccCC-CCcce---EEcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCC
Q 015182 233 EEIPD-GDTRF---KCAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295 (411)
Q Consensus 233 ~~~~~-~~~~~---~~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~ 295 (411)
.-+.+ +.-.. ...|. +|.. ...+.| .+.|.+..++||...... ....+
T Consensus 308 nt~~e~~dm~m~~h~l~~~~~ed~afa~srir~~tiaaed~l---~d~G~~s~~~SDs~~mgr------------~ge~~ 372 (568)
T PRK13985 308 NTEAEHMDMLMVCHHLDKSIKEDVQFADSRIRPQTIAAEDTL---HDMGIFSITSSDSQAMGR------------VGEVI 372 (568)
T ss_pred CchhhhcCeEEeecCCCCCCcchhhhhhhhccccccccCchh---hhCCcEEEEeccchhhCc------------cccee
Confidence 00000 00000 00111 1111 011122 234999999999642210 00001
Q ss_pred chhhhHHHHHHHH---HHh------------cCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeC
Q 015182 296 SSLQFVLPVTWSY---GRK------------YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELD 359 (411)
Q Consensus 296 ~~~~~~~~~~~~~---~~~------------~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~ 359 (411)
. .+|+. +.. -.++++++|+++|.|||+++|+ +++|+|++||.|||||||++..
T Consensus 373 ~-------r~~q~a~k~~~~~g~l~~~~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f---- 441 (568)
T PRK13985 373 T-------RTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF---- 441 (568)
T ss_pred e-------ehHHHHHHHHHhcCCCCCccccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccC----
Confidence 1 11111 111 1367889999999999999999 6799999999999999996621
Q ss_pred CCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 360 ~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
..++..||++|+++|..
T Consensus 442 --------------------~~~pe~vi~~G~iv~~~ 458 (568)
T PRK13985 442 --------------------GVKPNMIIKGGFIALSQ 458 (568)
T ss_pred --------------------CCChheEEECCEEEEcc
Confidence 12467999999999985
|
|
| >PRK06687 chlorohydrolase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=222.24 Aligned_cols=320 Identities=16% Similarity=0.133 Sum_probs=179.9
Q ss_pred CCceeecccccCCCCC---C--------------------ccCChHH----HHHHHHcCCceeEecCCCCCCCCCCCHHH
Q 015182 1 MPGLIDVHAHLDDPGR---T--------------------EWEGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTET 53 (411)
Q Consensus 1 lPGlID~H~H~~~~~~---~--------------------~~~~~~~----~~~~a~~~GvTtv~d~~~~~~~~~~~~~~ 53 (411)
+|||||+|+|+.+... . ..+..+. +...++++||||++|+. ...+ ....+.
T Consensus 57 ~PGlIn~H~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~-~~~~-~~~~~~ 134 (419)
T PRK06687 57 MPGLVNCHTHSAMTGLRGIRDDSNLHEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMY-NPNG-VDIQQI 134 (419)
T ss_pred ccceeeeccCCCccccccccCCCCHHHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhh-cccc-ccHHHH
Confidence 7999999999965421 0 0111222 33445899999999986 3222 122223
Q ss_pred HHHHHHHHhcCCceEEEEEe-eecCCC-ccchHHHHHHHH----CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC
Q 015182 54 LKLKVDAAEKRIYVDVGFWG-GLVPEN-AYNASALEALLN----AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 127 (411)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~----~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 127 (411)
++... +...++.+.... +..... .+.+++..++++ .+...+++++.+.. ...++++.++++++.|+++
T Consensus 135 ~~a~~---~~Gir~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~ 208 (419)
T PRK06687 135 YQVVK---TSKMRCYFSPTLFSSETETTAETISRTRSIIDEILKYKNPNFKVMVAPHS---PYSCSRDLLEASLEMAKEL 208 (419)
T ss_pred HHHHH---HhCCceEeccccccCCcccHHHHHHHHHHHHHHHhccCCCceEEEEeCCC---CCCCCHHHHHHHHHHHHHc
Confidence 33222 222334333211 111111 112333333332 23344777777643 2367899999999999999
Q ss_pred CCcEEEecCCcccc-hhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHH
Q 015182 128 KRPLLVHAEMEKGS-ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSL 206 (411)
Q Consensus 128 g~~v~~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~ 206 (411)
|+++.+|+.+.... ...+...| .+| ++...+.++ .+.+..+.|+... +.
T Consensus 209 g~~i~~H~~e~~~e~~~~~~~~g-------------~~~-----------~~~l~~~g~----l~~~~~~~H~~~~--~~ 258 (419)
T PRK06687 209 NIPLHVHVAETKEESGIILKRYG-------------KRP-----------LAFLEELGY----LDHPSVFAHGVEL--NE 258 (419)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHC-------------cCH-----------HHHHHHcCC----CCCCeEEEEEecC--CH
Confidence 99999999876421 11111110 111 111222221 2556777787754 23
Q ss_pred HHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccC
Q 015182 207 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 286 (411)
Q Consensus 207 ~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~ 286 (411)
+.++.+++.|+.+ .+||..-... + .-.+| +.++++.|+.+++|||..+.+...
T Consensus 259 ~~~~~la~~g~~v--~~~P~sn~~l-------~---~g~~p---------~~~~~~~Gv~v~lGtD~~~~~~~~------ 311 (419)
T PRK06687 259 REIERLASSQVAI--AHNPISNLKL-------A---SGIAP---------IIQLQKAGVAVGIATDSVASNNNL------ 311 (419)
T ss_pred HHHHHHHHcCCeE--EECcHHhhhh-------c---cCCCc---------HHHHHHCCCeEEEeCCCCCCCCCh------
Confidence 4456666777644 4577531110 1 11233 234577799999999964321100
Q ss_pred CccccCCCCchh-hhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCC-eeEeCC
Q 015182 287 NFLKAWGGISSL-QFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA-EFELDN 360 (411)
Q Consensus 287 ~~~~~~~g~~~~-~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~-~~~~~~ 360 (411)
..+ +.+....++... ...++++++++++|.|||+++|+ +++|+|++|+.|||+++|.+. +...|.
T Consensus 312 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~p~ 382 (419)
T PRK06687 312 ---------DMFEEGRTAALLQKMKSGDASQFPIETALKVLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQPQ 382 (419)
T ss_pred ---------hHHHHHHHHHHHhccccCCCccCCHHHHHHHHhHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcCCc
Confidence 111 112221222111 12489999999999999999999 568999999999999999763 322222
Q ss_pred CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 361 ~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
. +... ...|.+. ..+|..|||+||+|+++|+++.
T Consensus 383 ~-~~~~----~lv~~~~--~~~v~~v~v~G~~v~~~g~~~~ 416 (419)
T PRK06687 383 E-NMLS----HLVYAVK--SSDVDDVYIAGEQVVKQGQVLT 416 (419)
T ss_pred c-CHHH----HhheeCC--CCCccEEEECCEEEEECCeEec
Confidence 2 1111 1122221 3479999999999999999864
|
|
| >PRK13309 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=217.52 Aligned_cols=304 Identities=22% Similarity=0.255 Sum_probs=185.9
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC------CCCCCCCCHHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL------NSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+. .++|+++||||+++++. ++.+.......++.+.+..+ ...+++.++..
T Consensus 132 tPG~ID~HvH~~~P~~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~-~~pvn~g~~gk 201 (572)
T PRK13309 132 TAAGIDTHIHLISPQQ---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIE-GLPVNVGILGK 201 (572)
T ss_pred EeCEEEeecccCCcch---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhc-cCCcCEEEEcC
Confidence 5999999999988753 36899999999997531 22222233456776666555 34688887752
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ......++.++++.|+.+||++.++ ..+++.+.+++++|+++|.++.+|+..-... +
T Consensus 202 g---~~~~~~~l~el~~aGa~gfk~~~d~-------g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~--g---------- 259 (572)
T PRK13309 202 G---NSYGRGPLLEQAIAGVAGYKVHEDW-------GATAAALRHALRVADEVDIQVAVHTDSLNEC--G---------- 259 (572)
T ss_pred C---CCCCHHHHHHHHhcCcEEEEecCcC-------CcCHHHHHHHHHHHHhcCCEEEEeCCccccc--h----------
Confidence 2 2233466778888999999987543 2478999999999999999999999874321 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
.++.++ +.. .+.++|.+|.... -..-++++.+...++ +-++++|..-|.-.
T Consensus 260 -----------------~vE~~~--aa~-------~grpih~~H~~Gaggghapd~~~~~~~~~~-~~~st~pt~p~~~~ 312 (572)
T PRK13309 260 -----------------YVEDTI--DAF-------EGRTIHTFHTEGAGGGHAPDIIKVASQTNV-LPSSTNPTLPYGVN 312 (572)
T ss_pred -----------------hHHHHH--HHh-------CCCceeeeeccCcccCCchhHHHhcCCCCc-ccCCCCCCCCCccc
Confidence 122222 221 2788999997642 024466666644443 33445554222100
Q ss_pred cccCC-CC---cceEEcCC-----------CCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCch
Q 015182 233 EEIPD-GD---TRFKCAPP-----------IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 297 (411)
Q Consensus 233 ~~~~~-~~---~~~~~~p~-----------lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~ 297 (411)
-+.+ +. ......|. +|. +...+...+++.|++.+++||+ |...... .+++. +
T Consensus 313 -~~~e~~~m~m~~h~l~~~~~~D~~~a~srig~-e~~~a~~~l~daGa~~~~gSD~-pv~gr~~---~~p~~-------~ 379 (572)
T PRK13309 313 -SQAELFDMIMVCHNLNPNVPADVAFAESRVRP-ETIAAENVLHDMGVISMFSSDS-QAMGRVG---ENWLR-------A 379 (572)
T ss_pred -chHhhhchhhhhccCCCCCCCChhHHHHhhCc-hhhcchhHHHhCCCEEEEcCCC-CcccCCc---ccHHH-------H
Confidence 0000 00 00000111 111 1123334456779999999996 3310000 01110 0
Q ss_pred hhhHHHHHHH------H-HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCC
Q 015182 298 LQFVLPVTWS------Y-GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 369 (411)
Q Consensus 298 ~~~~~~~~~~------~-~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~ 369 (411)
+......... . .....+++.++|+++|.|||+++|+ +++|+|++||.|||||||++. +
T Consensus 380 iq~Av~rk~~~g~l~~~~~~~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~-f------------- 445 (572)
T PRK13309 380 IQTADAMKAARGKLPEDAAGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRF-F------------- 445 (572)
T ss_pred HHHHHHHHhccCCCCccCCCcccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhh-c-------------
Confidence 1111100000 0 0123478999999999999999999 789999999999999999651 1
Q ss_pred CCCccCCceEEeEEEEEEECCEEEEEc-Cccc
Q 015182 370 SISAYLGRRLSGKVLATISRGNLVYKE-GNHA 400 (411)
Q Consensus 370 ~~~p~~g~~~~~~v~~ti~~G~~v~~~-g~~~ 400 (411)
..++.+||++|++||.. |+..
T Consensus 446 ----------~~~~~~vi~~G~iv~~~~gd~~ 467 (572)
T PRK13309 446 ----------GAKPKMVIKGGMINWAAMGDPN 467 (572)
T ss_pred ----------CCCccEEEECCEEEEecCCCcc
Confidence 12468999999999988 6654
|
|
| >PRK07228 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=227.74 Aligned_cols=218 Identities=15% Similarity=0.145 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhh-hccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK-LEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.+++++++++++.|+++|+++.+|+.+.......+. ..| .+ .++...+.+ .
T Consensus 195 ~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~~-----------~~~~l~~~g----~ 246 (445)
T PRK07228 195 SCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEEETG-------------MR-----------NIHYLDEVG----L 246 (445)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC-------------CC-----------HHHHHHHCC----C
Confidence 467899999999999999999999976543221111 101 00 011122221 1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|++.. . .+.++.+++.|+.+ .+||..-.. . + .....++++++.|+++++
T Consensus 247 ~~~~~~l~H~~~~-~-~~~~~~~~~~g~~v--~~~P~~~~~------~-~------------~~~~p~~~~~~~Gv~v~l 303 (445)
T PRK07228 247 TGEDLILAHCVWL-D-EEEREILAETGTHV--THCPSSNLK------L-A------------SGIAPVPDLLERGINVAL 303 (445)
T ss_pred CCCCcEEEEEecC-C-HHHHHHHHHcCCeE--EEChHHhhh------c-c------------cccCcHHHHHHCCCeEEE
Confidence 2668888998854 2 23345556667644 467753110 0 0 012245667888999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCc
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHA 345 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~A 345 (411)
|||+.+..... ++| .+..+...++... ...++++++++++|.|||+++|+ +.+|+|++|+.|
T Consensus 304 GtD~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~s~~~al~~~T~~~A~~lg~~~~~G~l~~G~~A 369 (445)
T PRK07228 304 GADGAPCNNTL-----DPF---------TEMRQAALIQKVDRLGPTAMPARTVFEMATLGGAKAAGFEDEIGSLEEGKKA 369 (445)
T ss_pred cCCCCccCCCc-----cHH---------HHHHHHHHHhhhccCCCcccCHHHHHHHHHHHHHHHhCCCCCccccCCCCcc
Confidence 99986543211 112 1112222222111 13589999999999999999999 678999999999
Q ss_pred cEEEEcCCCeeEeCCCCCcccCCCCCCccCCc---eEEeEEEEEEECCEEEEEcCcccC
Q 015182 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGR---RLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 346 Dlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~---~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
||+|+|.+.+...+.+ . .+|+... ....+|..||++|++||++|+++.
T Consensus 370 Dlvvld~~~~~~~p~~-~-------~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 420 (445)
T PRK07228 370 DLAILDLDGLHATPSH-G-------VDVLSHLVYAAHGSDVETTMVDGKIVMEDGELTT 420 (445)
T ss_pred CEEEEcCCCcccCCCc-c-------cCHHHHhheeCCCCCeeEEEECCEEEEECCeEcc
Confidence 9999998865433322 0 1222111 013579999999999999999874
|
|
| >PRK13308 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=215.16 Aligned_cols=290 Identities=25% Similarity=0.311 Sum_probs=181.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCC-CCC-CCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN-SDP-STISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|+..|+. .++|+++||||+++++.. +.+ .......++.+.+..+. ..++++++....
T Consensus 132 tPG~ID~HVH~~~Pg~---------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~-~pvN~g~~gkG~-- 199 (569)
T PRK13308 132 TPGAIDVHVHFDSAQL---------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEA-WPVNFGFLGRGN-- 199 (569)
T ss_pred EeCEEEeeeCCCCccH---------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhc-CCccEEEEcCCc--
Confidence 5999999999987643 378999999999996411 112 23456667776665553 568988875322
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
...++++.++++.|+.+||++.++ ..+++.+.+++++|+++|++|.+|+...... +
T Consensus 200 -~s~~aeL~eli~aGA~GfKi~ed~-------g~t~~~i~~aL~~A~~~dv~VaiHadtlne~--g-------------- 255 (569)
T PRK13308 200 -SSKPAALIEQVEAGACGLKIHEDW-------GAMPAAIDTCLEVADEYDFQVQLHTDTLNES--G-------------- 255 (569)
T ss_pred -ccCHHHHHHHHHCCCCEEeecCCC-------CCCHHHHHHHHHHHHhcCCEEEEeCCCcCcc--h--------------
Confidence 134567888888999999988643 2477999999999999999999999874321 0
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
-++..++... |..+|++|....- ..-++|+.....++ +-.+++|..-|.- .-+.
T Consensus 256 -------------~~E~t~~a~~---------gr~iH~~H~egaggghapd~l~~~~~~n~-lp~stnpt~p~t~-nt~~ 311 (569)
T PRK13308 256 -------------FVEDTLAAIG---------GRTIHMYHTEGAGGGHAPDIIRVVGEPHC-LPSSTNPTNPYTV-NTFD 311 (569)
T ss_pred -------------HHHHHHHHhc---------CCeEEEEeccCCccCchhHHHHHhCCCCc-cCCCCCCCCCCcc-Cchh
Confidence 1222222222 8889999987530 24456666544443 3344555432211 0000
Q ss_pred C-CCcceE---EcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhh
Q 015182 237 D-GDTRFK---CAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299 (411)
Q Consensus 237 ~-~~~~~~---~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~ 299 (411)
+ +.-... ..|. +|.. ...+.| .+.|++..++||.... ..+.
T Consensus 312 e~~dm~m~~h~l~~~~~~d~afa~srir~~ti~ae~~l---~d~g~~s~~~sds~~m-------------------gr~~ 369 (569)
T PRK13308 312 EHLDMTMVCHHLNPDVPEDVAFAESRIRAQTIAAEDVL---HDIGAISMLGSDSQGM-------------------GRIA 369 (569)
T ss_pred hhcCeEEEecCCCCCCcchhhhhhhhccceeeccCchh---hcCCcEEEEecchHHH-------------------hHHH
Confidence 0 000000 0111 1111 001122 1338889999996321 1111
Q ss_pred hHHHHHHHHH---Hh-cC-CCHHH-----------HHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCC
Q 015182 300 FVLPVTWSYG---RK-YG-VTLEQ-----------LASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDH 362 (411)
Q Consensus 300 ~~~~~~~~~~---~~-~~-l~~~~-----------al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~ 362 (411)
..+...|+.. .. .| ++.++ .|+++|.|||+++|+ +++|+|++||.||||+||++. +
T Consensus 370 e~i~r~~q~a~~~~~~~g~l~~~~~~~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~-f------ 442 (569)
T PRK13308 370 EVIARTWQLASKMKDQRGPLPEDRGTFADNARIKRYIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAF-F------ 442 (569)
T ss_pred HHHHHHHHHHHHHhhcCCCCCcccccCCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCcc-c------
Confidence 1223334322 21 23 66554 799999999999999 679999999999999999651 1
Q ss_pred CcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 363 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 363 ~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
..++..||++|+++|..
T Consensus 443 -----------------gv~p~~ti~~G~iv~~~ 459 (569)
T PRK13308 443 -----------------GIKPELVIKGGFPAWAA 459 (569)
T ss_pred -----------------CCCeeEEEECCEEEEec
Confidence 11467899999999964
|
|
| >PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=219.56 Aligned_cols=228 Identities=15% Similarity=0.110 Sum_probs=142.2
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~ 174 (411)
.+++.+.+.+ ...+++++++++++.|+++|+++.+|+.+... ....+...| .+
T Consensus 198 ~i~~~~~~~~---~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~~---------- 251 (451)
T PRK08203 198 MLRIALAPCS---PFSVSRELMRESAALARRLGVRLHTHLAETLDEEAFCLERFG-------------MR---------- 251 (451)
T ss_pred eEEEEEecCC---CCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC-------------CC----------
Confidence 4666555432 23578999999999999999999999865322 111111000 00
Q ss_pred HHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhH
Q 015182 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANK 254 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~ 254 (411)
.++...+.++ .+.++.+.|+... +.+.++.+++.|+.+ .+||..... .+ ...+|
T Consensus 252 -~~~~l~~~g~----l~~~~~~~H~~~l--~~~~~~~la~~g~~v--~~~P~~~~~-------l~---~~~~~------- 305 (451)
T PRK08203 252 -PVDYLEDLGW----LGPDVWLAHCVHL--DDAEIARLARTGTGV--AHCPCSNMR-------LA---SGIAP------- 305 (451)
T ss_pred -HHHHHHHcCC----CCCCeEEEEEeCC--CHHHHHHHHhcCCeE--EECcHHhhh-------hc---cCCCC-------
Confidence 0122223221 2567778888765 234566666777644 467753110 01 11122
Q ss_pred HHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH--hcCCCHHHHHHHHhHhHHHHhC
Q 015182 255 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--KYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 255 ~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~l~~~~al~~~T~n~A~~lg 332 (411)
+.++++.|+.+++|||..+.+... ++| .+..+...+.... ...+++.++++++|.|||+++|
T Consensus 306 --~~~~~~~Gv~v~lGtD~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~i~~~~~l~~~T~~~A~~lg 369 (451)
T PRK08203 306 --VRELRAAGVPVGLGVDGSASNDGS-----NLI---------GEARQALLLQRLRYGPDAMTAREALEWATLGGARVLG 369 (451)
T ss_pred --HHHHHHCCCeEEEecCCCccCCCc-----CHH---------HHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHhC
Confidence 345577899999999964321100 111 1122222222221 2359999999999999999999
Q ss_pred CCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE--EeEEEEEEECCEEEEEcCcccC
Q 015182 333 QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL--SGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 333 ~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~--~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
++.+|+|++||.|||+|+|.+.+... .. ++||.++.+ ..+|..||++|++||++|+++.
T Consensus 370 ~~~~G~l~~G~~ADlvv~d~~~~~~~---------~~-~~p~~~l~~~~~~~v~~v~v~G~~v~~~~~~~~ 430 (451)
T PRK08203 370 RDDIGSLAPGKLADLALFDLDELRFA---------GA-HDPVAALVLCGPPRADRVMVGGRWVVRDGQLTT 430 (451)
T ss_pred CCCCCCcCCCCccCEEEEcCCccccC---------Cc-cChHHHHHccCCCCccEEEECCEEEEECCcccC
Confidence 97679999999999999998854221 11 567765543 3579999999999999999874
|
|
| >COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=222.30 Aligned_cols=297 Identities=20% Similarity=0.164 Sum_probs=186.4
Q ss_pred HHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEEeeecCCCccchHHHHHHH---HCCceEEEEe
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EKRIYVDVGFWGGLVPENAYNASALEALL---NAGVLGLKSF 100 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~ik~~ 100 (411)
+.+..++.|||++.||.. + ......+..++... .+...+++...........+..+.+.... .....++|+|
T Consensus 215 a~~~l~s~GiT~v~d~~~---~-~~~~~~~~~~r~~~~~~~l~~rv~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~K~f 290 (535)
T COG1574 215 AARELNSLGITGVHDMAG---Y-QGYYADYEAYRALAAGGELPVRVALLLFTEDLKEERLDLLRQTGAKGLLQGGGVKLF 290 (535)
T ss_pred HHHHHHhcCCeEEEcccc---c-ccchhHHHHHHHHHhcCcceEEEEeeccccchhhHHHhhcccCCccceeecCceEEE
Confidence 444677999999999982 1 12233334333332 34556666554321111110000000000 1224467787
Q ss_pred ccCC-------------C---CCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCC
Q 015182 101 MCPS-------------G---INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTR 164 (411)
Q Consensus 101 ~~~~-------------~---~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (411)
++.+ + ..|.+.+++++|.++++.|.++|+++.+|+.++.+++..+
T Consensus 291 ~Dgslg~rtA~l~~~y~d~~~~~G~~l~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~L------------------- 351 (535)
T COG1574 291 ADGSLGERTALLAAPYADGPGPSGELLLTEEELEELVRAADERGLPVAVHAIGDGAVDAAL------------------- 351 (535)
T ss_pred EeCCCCcchhhccCcccCCCCCCCCcccCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHH-------------------
Confidence 7631 1 1267789999999999999999999999999998755332
Q ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC-CCC-cce
Q 015182 165 PPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP-DGD-TRF 242 (411)
Q Consensus 165 p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~-~~~-~~~ 242 (411)
.+++.+... .+..+.+++++|++.. +.+.++++++.| +++++||++++.+...+. ..| .+.
T Consensus 352 ----------dafE~~~~~---~~~~~~r~rieH~~~v--~~~~i~R~~~Lg--v~~svQP~f~~~~~~~~~~rlG~~r~ 414 (535)
T COG1574 352 ----------DAFEKARKK---NGLKGLRHRIEHAELV--SPDQIERFAKLG--VIASVQPNFLFSDGEWYVDRLGEERA 414 (535)
T ss_pred ----------HHHHHHhhh---cCCccCCceeeeeeec--CHhHHHHHHhcC--ceEeeccccccccchHHHHhhhhhhh
Confidence 223333221 1123788999999875 446677776655 688999998876532222 222 233
Q ss_pred EEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHH
Q 015182 243 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASW 322 (411)
Q Consensus 243 ~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~ 322 (411)
...+|+ ..+++.|++++.|||. |... .+||..+...+.+.... ......+..+|++++|++
T Consensus 415 ~~~~p~---------~~ll~~G~~la~gSD~-Pv~~------~dP~~~i~~AVtr~~~~---g~~~~~~~~L~~~eAL~~ 475 (535)
T COG1574 415 SRSYPF---------RSLLKAGVPLAGGSDA-PVEP------YDPWLGIYAAVTRKTPG---GRVLGPEERLTREEALRA 475 (535)
T ss_pred hccCcH---------HHHHHCCCeEeccCCC-CCCC------CChHHHHHHHHcCCCCC---CCCCccccccCHHHHHHH
Confidence 334443 3457889999999995 6643 24553211111000000 000011226999999999
Q ss_pred HhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 323 WSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 323 ~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+|.|+|++.+. +++|+|++||.|||+|+|.| +|.++++ .+. ..+|..|+++||+||+.
T Consensus 476 yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d-~f~~~~~-~i~--------------~~~v~~T~~~Gk~VY~~ 534 (535)
T COG1574 476 YTEGGAYASGAEGEKGSLEPGKLADFAVLDRD-PFTVDPD-SIK--------------DTKVVLTIVAGKVVYRA 534 (535)
T ss_pred HhhhhHHhhhccccccccccCceeeEEEecCC-cccCChH-Hhc--------------cceEEEEEEcCeEeecC
Confidence 99999999999 78999999999999999987 7777776 442 45899999999999975
|
|
| >PRK13207 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=210.55 Aligned_cols=298 Identities=24% Similarity=0.332 Sum_probs=178.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC--CC--CCCCCC--HHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL--NS--DPSTIS--TETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~--~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+. .++++++||||+++|+. ++ .+...+ ...+..+.+..+ ...+++.++..
T Consensus 128 ~PG~ID~HvH~~~P~~---------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~-~~pin~g~~g~ 197 (568)
T PRK13207 128 TAGGIDTHIHFICPQQ---------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAAD-AFPMNIGFLGK 197 (568)
T ss_pred EeCeEECccCCccccH---------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhh-cCCceEEEEcC
Confidence 6999999999987642 47899999999999842 11 122111 123554444333 35678877652
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ..+.++++.++++.|+.+||++.++ ..+++++.+++++|+++|++|.+|+...... +
T Consensus 198 g---~~~~~~~L~e~i~aGA~gfKi~~d~-------g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~--G---------- 255 (568)
T PRK13207 198 G---NASLPEALEEQIEAGAIGLKLHEDW-------GATPAAIDNCLSVADEYDVQVAIHTDTLNES--G---------- 255 (568)
T ss_pred C---CcccHHHHHHHHHcCCCEEeecCCC-------CCCHHHHHHHHHHHHHhCCEEEEeCCCcccc--h----------
Confidence 2 2234677888889999999998653 2478999999999999999999999864321 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
-++..++.. .|..+|++|.... -..-++++.+.+.|+ +-++++|..-|.-.
T Consensus 256 -----------------~~e~t~~a~---------~g~~iH~~H~egaggghapdii~~~~~~~v-~p~st~pt~p~~~~ 308 (568)
T PRK13207 256 -----------------FVEDTIAAF---------KGRTIHTFHTEGAGGGHAPDIIKVAGEPNV-LPSSTNPTRPYTVN 308 (568)
T ss_pred -----------------HHHHHHHhc---------CCCEEEEEeecCCCcCCchHHHHHhhcCCC-ccCCCCCCCCCccC
Confidence 012222222 2788999997631 034567777777665 33455664322110
Q ss_pred cccCC-CCcceE---EcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCC
Q 015182 233 EEIPD-GDTRFK---CAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295 (411)
Q Consensus 233 ~~~~~-~~~~~~---~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~ 295 (411)
-+.+ +.-... ..|. +|.. ...+.| ++.|.+.+++||+ |.... ++.+++.
T Consensus 309 -~~~e~~~m~m~~h~l~~~~~~d~~~a~srir~~t~~ae~~l---~d~Ga~~~~~SD~-p~~~~---~~~~~~r------ 374 (568)
T PRK13207 309 -TIDEHLDMLMVCHHLDPSIPEDVAFAESRIRRETIAAEDIL---HDLGAISMISSDS-QAMGR---VGEVIIR------ 374 (568)
T ss_pred -chhhhcCeEEeecCCCCCCcchhhhhhhhccceeecccchh---hhCCCEEEecCCc-ccccc---cccchhH------
Confidence 0000 000000 0111 1111 011122 4559999999996 33210 0001110
Q ss_pred chhhhHHHHHHHHHHhcC-C----------CHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCC
Q 015182 296 SSLQFVLPVTWSYGRKYG-V----------TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHP 363 (411)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~-l----------~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~ 363 (411)
.+....+.....| + .+...|+++|.|||+++|+ +.+|+|++||.|||||||++. +
T Consensus 375 -----~~q~A~~r~~~~G~~~~d~~~~~n~ri~~~l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~-f------- 441 (568)
T PRK13207 375 -----TWQTAHKMKVQRGPLPGDSGRNDNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAF-F------- 441 (568)
T ss_pred -----HHHHHHHHHHccCCCCcccccCccchHHHHHHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchh-c-------
Confidence 0111111100111 1 1112299999999999999 679999999999999999651 1
Q ss_pred cccCCCCCCccCCceEEeEEEEEEECCEEEEEc-Cccc
Q 015182 364 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA 400 (411)
Q Consensus 364 ~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~-g~~~ 400 (411)
..++..|+++|+++|.. |+..
T Consensus 442 ----------------~~~~~~ti~~G~iv~~~~gd~~ 463 (568)
T PRK13207 442 ----------------GVKPELVLKGGMIAWAPMGDPN 463 (568)
T ss_pred ----------------CCCceEEEECCEEEEecCCCcc
Confidence 12467999999999987 6654
|
|
| >PRK08204 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=211.34 Aligned_cols=209 Identities=18% Similarity=0.176 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
.++++.++++++.|+++|+++.+|+.+..... +. ..++. +.+.+ ..
T Consensus 197 ~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~----------~~----------------~~~~~----l~~~g----~~ 242 (449)
T PRK08204 197 FSSWEVARADFRLARELGLPISMHQGFGPWGA----------TP----------------RGVEQ----LHDAG----LL 242 (449)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEEcCCCccc----------CC----------------CHHHH----HHHCC----CC
Confidence 46789999999999999999999997643200 00 01221 22221 12
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
+.++.+.|+... +.+.++.+++.|+.++ +||.+... .+. -.+| +.+++++|+.+++|
T Consensus 243 ~~~~~i~H~~~~--~~~~~~~la~~g~~v~--~~P~~~~~-------~g~---~~~~---------~~~~~~~Gv~v~lG 299 (449)
T PRK08204 243 GPDLNLVHGNDL--SDDELKLLADSGGSFS--VTPEIEMM-------MGH---GYPV---------TGRLLAHGVRPSLG 299 (449)
T ss_pred CCCeEEEecCCC--CHHHHHHHHHcCCCEE--EChHHHhh-------hcC---CCCc---------HHHHHhcCCceeec
Confidence 667889998875 3345667777787554 67753211 011 1122 23456779999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH--------------HHhcCCCHHHHHHHHhHhHHHHhCC-CC
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY--------------GRKYGVTLEQLASWWSERPAKLAGQ-VS 335 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~l~~~~al~~~T~n~A~~lg~-~~ 335 (411)
||+.+... .++|. +..+....+. ..+.++++.++|+++|.|+|+++|+ ++
T Consensus 300 tD~~~~~~------~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~ 364 (449)
T PRK08204 300 VDVVTSTG------GDMFT---------QMRFALQAERARDNAVHLREGGMPPPRLTLTARQVLEWATIEGARALGLEDR 364 (449)
T ss_pred cccCCCCC------cCHHH---------HHHHHHHHHHhhcccccccccccCCCcCCCCHHHHHHHHhHHHHHHcCCCCC
Confidence 99643321 01111 1111111111 0135799999999999999999999 56
Q ss_pred CCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCce---EEeEEEEEEECCEEEEEcCcccC
Q 015182 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 336 ~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~---~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+|+|++||.|||||||.+.+...|. ++|+.... ...+|..||++||+||++|+++.
T Consensus 365 ~G~le~Gk~ADlvvld~~~~~~~p~----------~dp~~~lv~~~~~~~v~~v~v~G~~v~~~~~~~~ 423 (449)
T PRK08204 365 IGSLTPGKQADLVLIDATDLNLAPV----------HDPVGAVVQSAHPGNVDSVMVAGRAVKRNGKLLG 423 (449)
T ss_pred CcccCCCCcCCEEEEcCCCccccCC----------cChhhhheeccCCCCceEEEECCEEEEECCEecc
Confidence 8999999999999999885422221 23332221 13579999999999999998874
|
|
| >PRK06151 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=218.67 Aligned_cols=229 Identities=17% Similarity=0.147 Sum_probs=140.7
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc-ccchhhhhhccCcCCccccccccCCCCHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 170 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~ 170 (411)
.|+..+|..+.+.. ...+++++|+++++.|+++|+++.+|+.+. ...+......| .
T Consensus 201 ~g~~~i~~~~~p~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~------- 257 (488)
T PRK06151 201 AHNGLVRGMLAPDR---IETCTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHG-------------T------- 257 (488)
T ss_pred ccCCceEEEEcCCC---CCCCCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcC-------------C-------
Confidence 46666887766542 235789999999999999999999999643 32211111100 0
Q ss_pred HHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHH--------HHHHHHHhHCCCCEEEEcccccccccccccCCCCcce
Q 015182 171 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS--------LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 242 (411)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~--------~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~ 242 (411)
..++...+.++ .+.++.+.|+... .+ .+.++.+++.|+. +.+||.... ..+.
T Consensus 258 ----~~~~~~~~~g~----l~~r~~l~H~~~l-~~~~~~~~~~~~~~~~la~~g~~--v~~~P~~~~-------~~g~-- 317 (488)
T PRK06151 258 ----TPLEWLADVGL----LGPRLLIPHATYI-SGSPRLNYSGGDDLALLAEHGVS--IVHCPLVSA-------RHGS-- 317 (488)
T ss_pred ----CHHHHHHHcCC----CCCCcEEEEEEEc-CCccccccCCHHHHHHHHhcCCE--EEECchhhh-------hhcc--
Confidence 01222222221 2557777787754 22 1566777777764 446664211 0111
Q ss_pred EEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh---cCCCHHHH
Q 015182 243 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK---YGVTLEQL 319 (411)
Q Consensus 243 ~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~l~~~~a 319 (411)
..+ .+.++++.|+.+++|||..+.. +|. +......+..... ..++++++
T Consensus 318 -~~~---------p~~~l~~~Gv~v~lGtD~~~~~---------~~~---------~~~~~~~~~~~~~~~~~~~~~~~a 369 (488)
T PRK06151 318 -ALN---------SFDRYREAGINLALGTDTFPPD---------MVM---------NMRVGLILGRVVEGDLDAASAADL 369 (488)
T ss_pred -ccc---------cHHHHHHCCCcEEEECCCCCcc---------HHH---------HHHHHHHHHHHhcCCCCCCCHHHH
Confidence 112 2344577799999999964321 110 1111111122222 24799999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE---EeEEEEEEECCEEEEEc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKE 396 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~---~~~v~~ti~~G~~v~~~ 396 (411)
++++|.|||+++|++.+|+|++|+.|||+|+|.+.+ ...+. ++|+..... ..+|..||++|++||++
T Consensus 370 l~~aT~~~A~~lg~~~~G~I~~G~~ADlvvld~~~~-~~~~~---------~d~~~~lv~~~~~~~v~~v~v~G~~v~~~ 439 (488)
T PRK06151 370 FDAATLGGARALGRDDLGRLAPGAKADIVVFDLDGL-HMGPV---------FDPIRTLVTGGSGRDVRAVFVDGRVVMED 439 (488)
T ss_pred HHHHHHHHHHHhCCCCCcccCCCCcCCEEEEeCCcc-ccCCc---------cCHHHHHHhhCCCCCccEEEECCEEEEEC
Confidence 999999999999995589999999999999998743 22111 223322111 24799999999999999
Q ss_pred CcccC
Q 015182 397 GNHAP 401 (411)
Q Consensus 397 g~~~~ 401 (411)
|+++.
T Consensus 440 g~~~~ 444 (488)
T PRK06151 440 GRLPG 444 (488)
T ss_pred CeecC
Confidence 99874
|
|
| >PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=214.34 Aligned_cols=232 Identities=14% Similarity=0.124 Sum_probs=139.8
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~ 175 (411)
.++..+.+.. ...++++.++++++.|+++|+++.+|+.+.......+.+ ....+|
T Consensus 181 ~i~~~~~~~~---~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~------------~~g~~~---------- 235 (435)
T PRK15493 181 MLTTMVAPHS---PYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEA------------QYGKRP---------- 235 (435)
T ss_pred CeEEEEeCCC---CCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH------------HhCCCH----------
Confidence 3666665542 235788999999999999999999999775431111110 001111
Q ss_pred HHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHH
Q 015182 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~ 255 (411)
++...+.|+ .+.+..+.|+... .+ +.++.+++.|+. +.+||..-.. .+ .-.+|
T Consensus 236 -~~~l~~~Gl----l~~~~~~~H~~~l-~~-~d~~~la~~g~~--v~~~P~sn~~-------l~---~g~~p-------- 288 (435)
T PRK15493 236 -VEYAASCGL----FKRPTVIAHGVVL-ND-NERAFLAEHDVR--VAHNPNSNLK-------LG---SGIAN-------- 288 (435)
T ss_pred -HHHHHHcCC----CCCCcEEEEeecC-CH-HHHHHHHHcCCe--EEEChHHHHH-------Hh---cCccc--------
Confidence 122223222 2556667777654 22 333455566764 4467854211 01 01122
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhC
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg 332 (411)
+.++++.|+.+++|||..+.+... +.| .+.++..+++... ...++++++++++|.|||+++|
T Consensus 289 -~~~~~~~Gv~v~lGtD~~~~~~~~-----d~~---------~~~~~a~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg 353 (435)
T PRK15493 289 -VKAMLEAGIKVGIATDSVASNNNL-----DMF---------EEMRIATLLQKGIHQDATALPVETALTLATKGAAEVIG 353 (435)
T ss_pred -HHHHHHCCCeEEEccCccccCCCc-----CHH---------HHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHHHHcC
Confidence 334577899999999974322110 011 1223333332221 2368999999999999999999
Q ss_pred CCCCCcccccCCccEEEEcCCCee-EeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 333 QVSKGAIAIGNHADLVVWEPEAEF-ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 333 ~~~~G~I~~G~~ADlvv~d~~~~~-~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
++++|+|++|+.||||+||.+..+ ..|.. ++.+ ...|.+. ...|..|||+||+|+++|+++.
T Consensus 354 ~~~~G~l~~G~~ADlvv~d~~~~~~~~p~~-d~~~----~lv~~~~--~~~V~~v~V~G~~v~~~g~~~~ 416 (435)
T PRK15493 354 MKQTGSLEVGKCADFITIDPSNKPHLQPAD-EVLS----HLVYAAS--GKDISDVIINGKRVVWNGECKT 416 (435)
T ss_pred CCCCCccCCCCcCCEEEEcCCCCCCcCCcc-ChHH----hEEEeCC--CCCccEEEECCEEEEECCeECC
Confidence 965899999999999999975322 23322 3322 2223221 2369999999999999999874
|
|
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=204.38 Aligned_cols=305 Identities=19% Similarity=0.216 Sum_probs=172.8
Q ss_pred CCceeecccccCCCCCC---ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec-
Q 015182 1 MPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV- 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~---~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (411)
+|||||+|+|+...+.. ...+...+...++++|+||++|++ +..+.....+.+....+.........+..+....
T Consensus 53 ~PG~id~H~H~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~d~~-~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~ 131 (387)
T cd01308 53 VPGFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVGCL-GTDGISRSMEDLLAKARALEEEGITCFVYTGSYEV 131 (387)
T ss_pred ccCeeehhhCcccccCCCcccccCHHHHHHHHHhCCceEEecCc-CCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCC
Confidence 79999999999653211 112233455678999999999998 4444333444444433322222222222221110
Q ss_pred CC-Cc-c----chHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCC------cEEEecCCcccchhh
Q 015182 77 PE-NA-Y----NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR------PLLVHAEMEKGSERH 144 (411)
Q Consensus 77 ~~-~~-~----~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~~~~~~~~~~ 144 (411)
+. .. + ++..+.++...|..+++ .+ +......+++.++.+.++..+. .+++|.....
T Consensus 132 ~~~~~~~~~~~~~~~i~~~~~~g~~~~~---~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~~----- 199 (387)
T cd01308 132 PTRTITGSIRKDLLLIDKVIGVGEIAIS---DH----RSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDGK----- 199 (387)
T ss_pred CCcCchhhHHHHHHHHHHhcCcceEEEc---CC----CCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCch-----
Confidence 00 00 0 11112221111222222 11 1123456788888888876443 3556654321
Q ss_pred hhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE-EEEcCCChHHHHH----HHHHHhHCCCCE
Q 015182 145 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL-HIVHLSDASSSLD----LLMEAKTNGDSI 219 (411)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~i~h~~~~~~~~~----~i~~~~~~g~~i 219 (411)
.++++++++.++. |.++ +++|.... ...+ .++.+ ++|..+
T Consensus 200 --------------------------~~~~~i~~~~~~~-------G~~~~~~~~~~~~-~~~~~~~~~~~~~-~~G~~v 244 (387)
T cd01308 200 --------------------------RALSPIFELIEET-------EIPITQFLPTHIN-RTAPLFEQGVEFA-KMGGTI 244 (387)
T ss_pred --------------------------HHHHHHHHHHHhc-------CCCcceeECCccc-CCHHHHHHHHHHH-HcCCcE
Confidence 2355666666654 5555 77776543 2222 34444 345433
Q ss_pred --EEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCc---cEEcCCCCCCChhhhhcccCCccccCCC
Q 015182 220 --TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI---DMLSSDHSPTVPELKLLDEGNFLKAWGG 294 (411)
Q Consensus 220 --~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~---~~~~sD~~p~~~~~k~~~~~~~~~~~~g 294 (411)
....+|+++ ..||++ ....+|.++++|.. ++++||+........ ..+.+ .+.|
T Consensus 245 ~i~~~~~~~~~---------------~~~~~~---~~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~--~~g~~--~~~g 302 (387)
T cd01308 245 DLTSSIDPQFR---------------KEGEVR---PSEALKRLLEQGVPLERITFSSDGNGSLPKFD--ENGNL--VGLG 302 (387)
T ss_pred EEECCCCcccc---------------ccCccC---hHHHHHHHHHhCCCCCcEEEEECCCCCcccCc--cCCeE--EecC
Confidence 222334322 123332 25677788888863 489999742210000 00111 2346
Q ss_pred CchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCcc
Q 015182 295 ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY 374 (411)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~ 374 (411)
.++.+..+..+.......+++++++++++|.|||+++|+.++|+|++|++|||+|||++.
T Consensus 303 ~~~~~~~~~~~~~~v~~~~i~~~~al~~~T~npA~~lg~~~~G~i~~G~~ADlvv~d~~~-------------------- 362 (387)
T cd01308 303 VGSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKLRKKGEIQPGFDADLVILDKDL-------------------- 362 (387)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcCCEEEEcCCC--------------------
Confidence 666666666555444455699999999999999999999548999999999999999651
Q ss_pred CCceEEeEEEEEEECCEEEEEcCcccCC
Q 015182 375 LGRRLSGKVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 375 ~g~~~~~~v~~ti~~G~~v~~~g~~~~~ 402 (411)
++..|+++|++|+++|++..+
T Consensus 363 -------~~~~~~~~G~~v~~~~~~~~~ 383 (387)
T cd01308 363 -------DINSVIAKGQIMVRNGKLLVK 383 (387)
T ss_pred -------CEEEEEECCEEEEECCeEeec
Confidence 367899999999999988754
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >PRK09045 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=209.02 Aligned_cols=234 Identities=13% Similarity=0.078 Sum_probs=140.5
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
+...+|+.+.+.. ...++++.++++++.|+++|+++.+|+.... .....+...| .+|
T Consensus 183 ~~~~i~~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~~~------ 240 (443)
T PRK09045 183 HHPLISTAFAPHA---PYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHG-------------QRP------ 240 (443)
T ss_pred CCCcEEEEEeCCC---CCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhC-------------CCH------
Confidence 4556777776543 1357899999999999999999999996532 2221111111 011
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
+ +...+.++ .+.++.+.|+... . .+.++.+++.|+ ...+||..-.. .+ ...+
T Consensus 241 -~----~~l~~~g~----l~~r~~~~H~~~l-~-~~~~~~la~~g~--~i~~~P~~~~~-------~~---~~~~----- 292 (443)
T PRK09045 241 -L----ARLARLGL----LGPRLIAVHMTQL-T-DAEIALLAETGC--SVVHCPESNLK-------LA---SGFC----- 292 (443)
T ss_pred -H----HHHHHcCC----CCCCeEEEEecCC-C-HHHHHHHHHcCC--eEEECHHHHhh-------hc---cCCC-----
Confidence 1 11222222 2557778888765 2 234555556675 44467742110 00 0111
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHH
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPA 328 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A 328 (411)
.+.++++.|+.+++|||+.+..... ++| .+..+..++.... ..+++++++++++|.|||
T Consensus 293 ----~~~~l~~~Gv~v~lGtD~~~~~~~~-----~~~---------~~~~~a~~~~~~~~~~~~~~~~~~al~~~T~~~A 354 (443)
T PRK09045 293 ----PVAKLLQAGVNVALGTDGAASNNDL-----DLF---------GEMRTAALLAKAVAGDATALPAHTALRMATLNGA 354 (443)
T ss_pred ----cHHHHHHCCCeEEEecCCCCCCCCc-----cHH---------HHHHHHHHHHhhccCCCCcCCHHHHHHHHhHHHH
Confidence 2334567799999999975322110 111 1122222221111 246999999999999999
Q ss_pred HHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 329 KLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 329 ~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+++|+ +++|+|++|+.|||||+|.+.+...+.. +... ..+|.. ...+|..||++||+||++|+++.
T Consensus 355 ~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~~-~~~~----~lv~~~--~~~~v~~v~v~G~~v~~~g~~~~ 421 (443)
T PRK09045 355 RALGLDDEIGSLEPGKQADLVAVDLSGLETQPVY-DPVS----QLVYAA--GREQVSHVWVAGKQLLDDRELTT 421 (443)
T ss_pred HHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCcc-ChHh----HhhEeC--CCCCccEEEECCEEEEECCcCCC
Confidence 99999 5689999999999999998853221111 1100 112211 13579999999999999999875
|
|
| >PRK06380 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=206.92 Aligned_cols=220 Identities=17% Similarity=0.135 Sum_probs=133.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCC
Q 015182 109 FPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 187 (411)
Q Consensus 109 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~ 187 (411)
...+++++++++++.|+++|+++++|+.+.. .+.....+.| .+| ++.+.+.++
T Consensus 180 ~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~~~-----------ie~~~~~g~-- 233 (418)
T PRK06380 180 IYVANDETYLKAKEIAEKYDTIMHMHLSETRKEVYDHVKRTG-------------ERP-----------VEHLEKIGF-- 233 (418)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHhC-------------CCH-----------HHHHHHCCC--
Confidence 3467899999999999999999999998753 2111111111 011 122222221
Q ss_pred CCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc
Q 015182 188 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 267 (411)
Q Consensus 188 ~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~ 267 (411)
.+.++.+.|+... . .+.++.+++.|+ .+.+||..... .+. ...+| +.++++.|+.+
T Consensus 234 --l~~~~~~~H~~~l-~-~~d~~~la~~g~--~v~~~P~sn~~-------l~~--~g~~p---------~~~~~~~Gv~v 289 (418)
T PRK06380 234 --LNSKLIAAHCVWA-T-YHEIKLLSKNGV--KVSWNSVSNFK-------LGT--GGSPP---------IPEMLDNGINV 289 (418)
T ss_pred --CCCCeEEEEeecC-C-HHHHHHHHHcCC--EEEECHHHHHh-------hcc--CCCCc---------HHHHHHCCCeE
Confidence 2456667777654 2 234555666665 44577864211 010 01122 33557789999
Q ss_pred EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCC
Q 015182 268 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNH 344 (411)
Q Consensus 268 ~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ 344 (411)
++|||....+... +.| .+..+...+.... ...++++++++++|.|+|++||++ .|+|++||.
T Consensus 290 ~lGTD~~~~~~~~-----d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~-~G~l~~G~~ 354 (418)
T PRK06380 290 TIGTDSNGSNNSL-----DMF---------EAMKFSALSVKNERWDASIIKAQEILDFATINAAKALELN-AGSIEVGKL 354 (418)
T ss_pred EEcCCCCcCCCCc-----CHH---------HHHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHHHhCCC-CCccCCCcc
Confidence 9999963221100 001 1112111111111 113899999999999999999994 899999999
Q ss_pred ccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE---EeEEEEEEECCEEEEEcCcccC
Q 015182 345 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 345 ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~---~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
||||++|.+.+...|.. . ++|+..... ..+|..||++|++|+++|+++.
T Consensus 355 ADlvv~d~~~~~~~p~~-~-------~~~~~~lv~~~~~~~v~~v~v~G~~v~~~g~~~~ 406 (418)
T PRK06380 355 ADLVILDARAPNMIPTR-K-------NNIVSNIVYSLNPLNVDHVIVNGKILKENGRLNG 406 (418)
T ss_pred CCEEEEeCCCCccCCCC-c-------cChHHheeecCCCCceeEEEECCEEEEECCeECc
Confidence 99999998866555421 0 233332222 2479999999999999999874
|
|
| >COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=210.43 Aligned_cols=188 Identities=19% Similarity=0.190 Sum_probs=124.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 109 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 109 ~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
...+++++++++++.|++.|+++.+|++..+.+ ..++++..
T Consensus 214 ~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~g~--------------------------------~~A~~~g~------- 254 (406)
T COG1228 214 GGQFSPEEIRAVLAAALKAGIPVKAHAHGADGI--------------------------------KLAIRLGA------- 254 (406)
T ss_pred ccccCHHHHHHHHHHHHHCCCceEEEecccchH--------------------------------HHHHHhCc-------
Confidence 357899999999999999999999999986532 22222211
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhH--CCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCc
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKT--NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 266 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~--~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~ 266 (411)
..+.|.... +.+-++.+++ .|.. .++..|...+.. .. ........+++.|+.
T Consensus 255 -----~s~~H~~~l--d~~~~~~~a~~~~g~~-~~~l~p~~~~~l-------------~e-----~~~~~~~~l~~~GV~ 308 (406)
T COG1228 255 -----KSAEHGTLL--DHETAALLAEKGAGTP-VPVLLPRTKFEL-------------RE-----LDYKPARKLIDAGVK 308 (406)
T ss_pred -----ceehhhhhc--CHhHHHHHhhccCCCc-cccccchhhhhh-------------hc-----ccchhHHHHHHCCCE
Confidence 125565543 2234444445 4443 123333221110 00 112234556778999
Q ss_pred cEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCc
Q 015182 267 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHA 345 (411)
Q Consensus 267 ~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~A 345 (411)
++++||+.|.+.. ..+...+.+....+||++|+|+++|.|||++||+ ++.|+|++||+|
T Consensus 309 vai~TD~~~~~~~--------------------~~l~~~m~l~~~~gmtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~A 368 (406)
T COG1228 309 VAIGTDHNPGTSH--------------------GSLALEMALAVRLGMTPEEALKAATINAAKALGLADKVGSLEPGKDA 368 (406)
T ss_pred EEEEcCCCCCchh--------------------hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccCCCcc
Confidence 9999998765421 0222333445566799999999999999999999 789999999999
Q ss_pred cEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 346 Dlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
||||||.|++..++.. .+ ...|..||.+|+++|+.+
T Consensus 369 Dlvv~~~dp~~~i~y~----------~~------~~~v~~v~k~G~~~~~~~ 404 (406)
T COG1228 369 DLVVWDGDPLADIPYF----------LG------LNKVEAVIKDGKVVYERG 404 (406)
T ss_pred CEEEEcCCChhhcccc----------cc------CCceEEEEECCEEeecCC
Confidence 9999999864333111 11 236899999999999875
|
|
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-23 Score=200.32 Aligned_cols=274 Identities=22% Similarity=0.256 Sum_probs=179.1
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeee----c
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL----V 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (411)
+|||||+|+|+..+... ....++.++++||||++++| +..+.....+.++.+.+.+ .+..+++.+.... +
T Consensus 8 ~PG~ID~H~Hi~~~~~~----~~~~~~~a~~~GvTtvv~~p-~~~~~v~g~~~~~~~~~~a-~~~p~~~~~~~p~~vp~t 81 (422)
T cd01295 8 VPGFIDAHLHIESSMLT----PSEFAKAVLPHGTTTVIADP-HEIANVAGVDGIEFMLEDA-KKTPLDIFWMLPSCVPAT 81 (422)
T ss_pred ccCEEEccCCcCCCCCC----hHHHHHHHHCCCcEEEEeCC-CCCCcCCCHHHHHHHHHHH-hCCCceEEEeCCCcCCCC
Confidence 69999999999876532 33457899999999999998 6666667788888777654 3446666443321 1
Q ss_pred CC-C-cc--chHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCc
Q 015182 77 PE-N-AY--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 151 (411)
Q Consensus 77 ~~-~-~~--~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 151 (411)
+. + .. .++++.++.+ .++.++|.+|+|.. . ..+++++.+.++.|+++|+++.+|+.+....
T Consensus 82 ~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~---v-~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~~---------- 147 (422)
T cd01295 82 PFETSGAELTAEDIKELLEHPEVVGLGEVMDFPG---V-IEGDDEMLAKIQAAKKAGKPVDGHAPGLSGE---------- 147 (422)
T ss_pred CCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCcc---c-cCCcHHHHHHHHHHHhCCCEEEEeCCCCCHH----------
Confidence 11 0 01 2667777776 49999999887652 1 3466889999999999999999999875410
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
.+...+. . |.+ .+|.+.. ..+.++++ ++|+.+. +++.+.
T Consensus 148 --------------------~L~a~l~----a-------Gi~--~dH~~~~--~eea~e~l-~~G~~i~--i~~g~~--- 186 (422)
T cd01295 148 --------------------ELNAYMA----A-------GIS--TDHEAMT--GEEALEKL-RLGMYVM--LREGSI--- 186 (422)
T ss_pred --------------------HHHHHHH----c-------CCC--CCcCCCc--HHHHHHHH-HCCCEEE--EECccc---
Confidence 1222221 1 222 2476653 33444444 5676433 332211
Q ss_pred ccccCCCCcceEEcCCCCChhhHHHHHHHHh--cCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH
Q 015182 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEALM--DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 309 (411)
Q Consensus 232 ~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~--~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 309 (411)
..+...+.+.+. .+..++++||. |... ++. ..| .+....+..
T Consensus 187 -------------------~~~~~~~~~~l~~~~~~~i~l~TD~-~~~~--------~~~--~~g------~~~~v~r~a 230 (422)
T cd01295 187 -------------------AKNLEALLPAITEKNFRRFMFCTDD-VHPD--------DLL--SEG------HLDYIVRRA 230 (422)
T ss_pred -------------------HhhHHHHHHhhhhccCCeEEEEcCC-CCch--------hhh--hcc------hHHHHHHHH
Confidence 011223333333 36788999996 3221 110 011 122223334
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEEC
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISR 389 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~ 389 (411)
...+++++++++++|.|||++++++++|+|+||+.|||+++|.. + ..+|..||++
T Consensus 231 ~~~g~s~~eal~~aT~n~A~~~gl~~~G~i~~G~~AD~vv~~~~-------~------------------~~~v~~v~~~ 285 (422)
T cd01295 231 IEAGIPPEDAIQMATINPAECYGLHDLGAIAPGRIADIVILDDL-------E------------------NFNITTVLAK 285 (422)
T ss_pred HHcCCCHHHHHHHHhHHHHHHcCCCCCcccCCCCcCCEEEECCC-------C------------------CCceEEEEEC
Confidence 56789999999999999999999966899999999999999821 0 1258899999
Q ss_pred CEEEEEc
Q 015182 390 GNLVYKE 396 (411)
Q Consensus 390 G~~v~~~ 396 (411)
|++||+.
T Consensus 286 G~~v~~r 292 (422)
T cd01295 286 GIAVVER 292 (422)
T ss_pred CeEEEEe
Confidence 9999975
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >PRK07583 cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=207.16 Aligned_cols=311 Identities=18% Similarity=0.167 Sum_probs=178.1
Q ss_pred CCceeecccccCCCCC------------------C-------ccCC----hHHHHHHHHcCCceeEecCCCCCCCC--CC
Q 015182 1 MPGLIDVHAHLDDPGR------------------T-------EWEG----FPSGTKAAAAGGITTLIDMPLNSDPS--TI 49 (411)
Q Consensus 1 lPGlID~H~H~~~~~~------------------~-------~~~~----~~~~~~~a~~~GvTtv~d~~~~~~~~--~~ 49 (411)
+|||||+|+|+..... . +.++ +..+++.++++|+|+++.+. +..+. ..
T Consensus 74 ~Pg~id~H~Hld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~v-d~~~~~~~~ 152 (438)
T PRK07583 74 WPCFVDMHTHLDKGHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHL-DSFAPQAAI 152 (438)
T ss_pred cCCcccceeccccceecCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeee-ccCCCCccc
Confidence 6999999999854200 0 1233 55677889999999888765 32111 22
Q ss_pred CHHHHHHHHHHHhcCCceEEEEEeeecC--CCccchHHHHHHH-HC-CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 50 STETLKLKVDAAEKRIYVDVGFWGGLVP--ENAYNASALEALL-NA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
..+.+.+..+..... +++........ ...+...++.+.+ +. |+.+.+.++.+ -+++.+..+++.|+
T Consensus 153 ~~~~i~~~~~~~~~~--~~~~~v~~~p~~~~~~~~~~eL~~~v~~~~gv~g~~~~~~~--------~~d~~l~~i~~lA~ 222 (438)
T PRK07583 153 SWEVFAELREAWAGR--IALQAVSLVPLDAYLTDAGERLADLVAEAGGLLGGVTYMNP--------DLDAQLDRLFRLAR 222 (438)
T ss_pred HHHHHHHHHHHhhcc--CeEEEEEecChhhccCchHHHHHHHHHHcCCEEeCCCCCCC--------CHHHHHHHHHHHHH
Confidence 333444444433332 33222110100 0111223455544 33 56665544321 15689999999999
Q ss_pred hCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--
Q 015182 126 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS-- 203 (411)
Q Consensus 126 ~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~-- 203 (411)
++|+++.+|+.+...... ..+..+.+.+.+.+ ...++++.|+....
T Consensus 223 ~~G~~v~vH~~E~~~~~~---------------------------~~l~~~~~~~~~~G-----~~~~v~i~H~~~l~~~ 270 (438)
T PRK07583 223 ERGLDLDLHVDETGDPAS---------------------------RTLKAVAEAALRNG-----FEGKVTCGHCCSLAVQ 270 (438)
T ss_pred HhCCCcEEeECCCCCchH---------------------------HHHHHHHHHHHHhC-----CCCCEEEEeccchhcC
Confidence 999999999965322110 11223333333331 13468899987530
Q ss_pred ---HHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhh
Q 015182 204 ---SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL 280 (411)
Q Consensus 204 ---~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~ 280 (411)
...++++.+++.|+.+ .+||...+..... .....|+.+... .+.++++.|+.+++|||+.+
T Consensus 271 ~~~~~~~~i~~la~~gv~v--v~~P~~~~~l~~~------~~~~~p~~~~~~---~v~~l~~aGV~valGtD~~~----- 334 (438)
T PRK07583 271 PEEQAQATIALVAEAGIAI--VSLPMCNLYLQDR------QPGRTPRWRGVT---LVHELKAAGIPVAVASDNCR----- 334 (438)
T ss_pred CHHHHHHHHHHHHHcCCeE--EECcchhhhhcCC------CcCCCCCCCCcc---hHHHHHHCCCeEEEEeCCCC-----
Confidence 1146788888888755 4677643221100 001123344332 34445666999999999753
Q ss_pred hhcccCCccccCCC-CchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeC
Q 015182 281 KLLDEGNFLKAWGG-ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 359 (411)
Q Consensus 281 k~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~ 359 (411)
++|. |.| ...++... .... ....+.+++++++++|.|||+++|++.+|+|++|+.|||||+|.++...+
T Consensus 335 -----d~~~--p~g~~~~~~~~~-~a~~-~~~~~~~~~~al~~~T~~~A~~lg~~~~G~i~~G~~ADlvv~d~~~~~~~- 404 (438)
T PRK07583 335 -----DPFY--AYGDHDMLEVFR-EAVR-ILHLDHPYDDWPAAVTTTPADIMGLPDLGRIAVGAPADLVLFKARSFSEL- 404 (438)
T ss_pred -----CCCC--CCCCcCHHHHHH-HHHH-HHhcCCcHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEEcCCCHHHH-
Confidence 1222 223 22222111 1111 11236789999999999999999995489999999999999998853221
Q ss_pred CCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 360 ~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
.. ....+..||.+|++|+...
T Consensus 405 -----~~------------~~~~~~~V~~~G~~v~~~~ 425 (438)
T PRK07583 405 -----LS------------RPQSDRIVLRAGKPIDTTL 425 (438)
T ss_pred -----Hh------------cCCCccEEEECCEEecccC
Confidence 10 0224678999999987653
|
|
| >TIGR01178 ade adenine deaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=207.18 Aligned_cols=273 Identities=21% Similarity=0.231 Sum_probs=175.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeee-cC--
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-VP-- 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 77 (411)
+|||||+|+|+..+... .+++ .+.++.+||||++++| ++.+.....+.++.+.+.++ +..+++.+.... .+
T Consensus 49 ~PG~ID~H~Hi~~~~~~-~~~~---~~~al~~GvTtvv~~P-~~~~~v~g~~~~~~~~~~a~-~~~~d~~~~~~s~vp~~ 122 (552)
T TIGR01178 49 VPGFIDAHIHIESSMLT-PSEF---AKLVLPHGVTTVVSDP-HEIANVNGEDGINFMLNNAK-KTPLNFYFMLPSCVPAL 122 (552)
T ss_pred EeCeEecccccCCCCCC-hhHH---HHHHHCCCEEEEEcCC-CCCCCCCCHHHHHHHHHHhh-cCCcEEEEECCCCCCCC
Confidence 69999999999876543 2323 4678999999999999 77676677888888877655 567787544321 01
Q ss_pred --C-Ccc--chHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCc
Q 015182 78 --E-NAY--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 151 (411)
Q Consensus 78 --~-~~~--~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 151 (411)
+ +.. ..+++.++.+ .|+.++|.+|+|.+ . ...++.+.+.++.+++.|+.+..||......
T Consensus 123 ~~e~~g~~~~~~~i~~~~~~~~V~glke~m~~~~---v-~~~d~~~l~~i~~a~~~g~~I~gHap~l~~~---------- 188 (552)
T TIGR01178 123 QFETSGAVLTAEDIDELMELDEVLGLAEVMDYPG---V-INADIEMLNKINSARKRNKVIDGHCPGLSGK---------- 188 (552)
T ss_pred cccCCCCccCHHHHHHHHcCCCccEEEEEecchh---h-cCCCHHHHHHHHHHHhCCCEEEecCCCCCHH----------
Confidence 1 111 3567777775 59999999998753 2 2234444455588999999999999853210
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
.+... .. . |.. ..|.... .+...+..++|..+..--
T Consensus 189 --------------------eL~~~---~~-a-------Gi~--~dHe~~s---~~ea~e~~~~Gm~~~ir~-------- 224 (552)
T TIGR01178 189 --------------------LLNKY---IS-A-------GIS--NDHESTS---IEEAREKLRLGMKLMIRE-------- 224 (552)
T ss_pred --------------------HHHHH---HH-c-------CCC--CCcCcCC---HHHHHHHHHCCCEEEEeC--------
Confidence 11111 11 1 322 5675542 333444456676544210
Q ss_pred ccccCCCCcceEEcCCCCChhhHHHHHHHH--hcCCccEEcCCCC-CCChhhhhcccCCccccCCCCchhhhHHHHHHHH
Q 015182 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEAL--MDGHIDMLSSDHS-PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 308 (411)
Q Consensus 232 ~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l--~~G~~~~~~sD~~-p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~ 308 (411)
+... .+...+...+ ..+..++++||.. |... + . +..+....+.
T Consensus 225 -------gs~~---------~n~~~~~~~~~~~~~~~~~l~TD~~~~~~~---------~---~------~g~l~~~v~~ 270 (552)
T TIGR01178 225 -------GSAA---------KNLEALHPLINEKNCRSLMLCTDDRHVNDI---------L---N------EGHINHIVRR 270 (552)
T ss_pred -------Cccc---------cCHHHHHHHHhhcCCceEEEEeCCCChhHH---------H---h------cCCHHHHHHH
Confidence 1100 0112222222 2467899999931 1110 1 0 1123333444
Q ss_pred HHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEE
Q 015182 309 GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 388 (411)
Q Consensus 309 ~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~ 388 (411)
..+.+++++++++++|.|||+++|+++.|+|++|+.|||+++|... ..+|..||+
T Consensus 271 ai~~g~~~~~Al~maT~npA~~lgl~~~G~I~pG~~ADlvvl~~l~-------------------------~~~v~~v~~ 325 (552)
T TIGR01178 271 AIEHGVDPFDALQMASINPAEHFGIDVGGLIAPGDPADFVILKDLR-------------------------NFKVNKTYV 325 (552)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEEECCCC-------------------------CceEEEEEE
Confidence 4567899999999999999999999668999999999999998310 125889999
Q ss_pred CCEEEEEc
Q 015182 389 RGNLVYKE 396 (411)
Q Consensus 389 ~G~~v~~~ 396 (411)
+|++|.++
T Consensus 326 ~G~~v~~~ 333 (552)
T TIGR01178 326 KGKLLDLN 333 (552)
T ss_pred CCEEEccc
Confidence 99999997
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. |
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=200.42 Aligned_cols=311 Identities=22% Similarity=0.250 Sum_probs=172.9
Q ss_pred CCceeecccccCCCCCC---ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~---~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|+...+.. ...+...+.++++++||||++|++ +..+.....+.+.+..+.... ..++.....+...
T Consensus 55 ~PG~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvvd~~-~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~~~~ 132 (388)
T PRK10657 55 VPGFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVVGLL-GTDGITRSMESLLAKARALEE-EGISAYMYTGSYH 132 (388)
T ss_pred cccceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEECCC-CCCCCCCCHHHHHHHHHHHHh-hCCEEEEEecCCC
Confidence 69999999998732111 123455678899999999999998 543333334334433322221 2233332211111
Q ss_pred CCc-cchHHHHHH--HHCCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCC------cEEEecCCcccchhhhhh
Q 015182 78 ENA-YNASALEAL--LNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKR------PLLVHAEMEKGSERHVKL 147 (411)
Q Consensus 78 ~~~-~~~~~~~~~--~~~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~~~~~~~~~~~~~ 147 (411)
... ...+.+.+. ....+.++ |+.+.+. .....+.+++.++.+.++..+. ++++|+.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~---~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~------- 202 (388)
T PRK10657 133 VPVRTITGSIRKDIVLIDKVIGVGEIAISDH---RSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKK------- 202 (388)
T ss_pred CCchhhhcchhhceehhhhhhCcceeeeccC---CCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchH-------
Confidence 000 000001110 00111222 3322221 1123477888888777765444 78888763211
Q ss_pred ccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccc
Q 015182 148 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 227 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~ 227 (411)
.++.+.++.++.|. ...++...|+....+..+...++.++|..+....
T Consensus 203 ------------------------~l~~v~~~l~~~Gv----~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~---- 250 (388)
T PRK10657 203 ------------------------GLQPLFELLENTDI----PISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTT---- 250 (388)
T ss_pred ------------------------HHHHHHHHHHhcCC----CcceeeCcccCCCHHHHHHHHHHHHcCCeEEEec----
Confidence 12222222222211 1223455565542022233333334565442220
Q ss_pred ccccccccCCCCcceEEcCCCCCh---hhHHHHHHHHhcCC---ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhH
Q 015182 228 LAFSAEEIPDGDTRFKCAPPIRDA---ANKEKLWEALMDGH---IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV 301 (411)
Q Consensus 228 l~~~~~~~~~~~~~~~~~p~lr~~---~~~~~l~~~l~~G~---~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~ 301 (411)
..|+++.. .+...+|+++++|. .++++||+....+.... ...+ .+.|..+....
T Consensus 251 ----------------~~~~~~~~~~~~~~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~--~g~~--~~~g~~~~~~l 310 (388)
T PRK10657 251 ----------------SDPDFLGEGEVAPAEALKRALEAGVPLSRVTLSSDGNGSLPKFDE--DGNL--VGLGVGSVESL 310 (388)
T ss_pred ----------------CCCcccccCccCHHHHHHHHHHcCCChhheEEECCCCCCCceecc--CCCE--eccCcCchhhH
Confidence 11222221 34578999999998 45999997533211000 0011 34566666655
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEe
Q 015182 302 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 381 (411)
Q Consensus 302 ~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~ 381 (411)
+..+.......+++++++++++|.|||+++++.++|+|++|+.|||++|| +. .
T Consensus 311 ~~~~~~~~~~~gis~~~~l~~aT~npA~~lg~~~~G~l~~G~~AD~vv~~-~~--------------------------~ 363 (388)
T PRK10657 311 LEEVRELVKDEGLPLEDALKPLTSNVARFLKLNGKGEILPGKDADLLVLD-DD--------------------------L 363 (388)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCccCEEEEC-CC--------------------------C
Confidence 55555444577899999999999999999999449999999999999999 31 0
Q ss_pred EEEEEEECCEEEEEcCcccCC
Q 015182 382 KVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 382 ~v~~ti~~G~~v~~~g~~~~~ 402 (411)
.|..|+++|++|+++|+++.+
T Consensus 364 ~~~~~~~~G~~v~~~~~~~~~ 384 (388)
T PRK10657 364 RIEQVIAKGKLMVKDGKALVK 384 (388)
T ss_pred CEEEEEECCEEEEECCEEecc
Confidence 478999999999999998865
|
|
| >TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-23 Score=194.49 Aligned_cols=308 Identities=22% Similarity=0.243 Sum_probs=174.9
Q ss_pred CCceeecccccCCCCCC---ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec-
Q 015182 1 MPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV- 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~---~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (411)
+|||||+|+|+...+.+ ...+...+...++++||||++|+. .+.......+.+.++.+.... ..++...+.+..
T Consensus 55 ~PGlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~d~~-g~~~~~~~~~~~~a~~~al~~-~Gir~~~~~g~~~ 132 (389)
T TIGR01975 55 VPGFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVVGLL-GTDGITRHMESLLAKARALEE-EGISCYMLTGAYH 132 (389)
T ss_pred ccCEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEecCc-ccCccccChhhHHHHHHHHHH-hCCEEEEEccccc
Confidence 69999999998653211 112233457778999999999986 443322333322222221121 122222211111
Q ss_pred -C---CCccchHHHHHHHHCCceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCC----Cc--EEEecCCcccchhhh
Q 015182 77 -P---ENAYNASALEALLNAGVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYK----RP--LLVHAEMEKGSERHV 145 (411)
Q Consensus 77 -~---~~~~~~~~~~~~~~~g~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g----~~--v~~H~~~~~~~~~~~ 145 (411)
+ -+.....++.. ..-+.|+| +-++..- ....+.++|+++.+.|+..| ++ +++|..+...
T Consensus 133 ~p~~t~t~~~~~d~~~--~d~iiG~~~ia~sd~r---~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~----- 202 (389)
T TIGR01975 133 VPSRTITGSVESDLLL--IDKVIGVGEIAISDHR---SAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKR----- 202 (389)
T ss_pred CCCcccccchhhheee--ehhhcccceEEEccCc---CCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchh-----
Confidence 0 11111122211 12456664 6565432 13457899999999999998 99 9999876431
Q ss_pred hhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEE---EcCCChHHHHH-HHHHHhHCCCCEEE
Q 015182 146 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI---VHLSDASSSLD-LLMEAKTNGDSITV 221 (411)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i---~h~~~~~~~~~-~i~~~~~~g~~i~~ 221 (411)
.++.++++.++. +.+.|. .|+.....-++ .++.++ +|..+-.
T Consensus 203 --------------------------~l~~l~~~~~~~-------di~~~~f~pth~~r~~~l~~~~i~~~~-~gg~iDv 248 (389)
T TIGR01975 203 --------------------------ALQPIYELVENT-------DVPITQFLPTHINRNVPLFEAGLEFAK-KGGTIDL 248 (389)
T ss_pred --------------------------hHHHHHHHHHhc-------CCChhheecCccCCCHHHHHHHHHHHH-hCCcEEE
Confidence 245556666654 333332 35543202223 344444 4433332
Q ss_pred Eccccc-ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc---EEcCCCCCCChhhhhcccCCccccCCCCch
Q 015182 222 ETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID---MLSSDHSPTVPELKLLDEGNFLKAWGGISS 297 (411)
Q Consensus 222 ~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~---~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~ 297 (411)
. .|.. .++.. . +....+.+..++++|+.. +++||.......... .-.....|+.+
T Consensus 249 ~-~~~~~~~l~~-------------~---~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~----~g~~~~~g~g~ 307 (389)
T TIGR01975 249 T-SSIDPQFRKE-------------G---EVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDE----NGELTGLGVGS 307 (389)
T ss_pred e-CCCCccchhc-------------c---ccChHHHHHHHHHcCCCcceEEEEeCCCCCCCcccc----ccccccCCcCc
Confidence 2 1111 00000 0 011244667778889864 899996421110000 00012345555
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCc
Q 015182 298 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR 377 (411)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~ 377 (411)
....+..+..++...+++++++++++|.|||++||++++|+|++|++|||+|||.+.
T Consensus 308 ~~sl~~~~~~lv~~g~ls~~eal~~~T~npA~~Lgl~~~G~I~~G~~ADlvild~~~----------------------- 364 (389)
T TIGR01975 308 FETLFEEVREAVKDGDVPLEKALRVITSNVAGVLNLTGKGEISPGNDADLVVLDPDL----------------------- 364 (389)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCCCCCeECCCCcCCEEEEcCCC-----------------------
Confidence 544444433334445699999999999999999999768999999999999999551
Q ss_pred eEEeEEEEEEECCEEEEEcCcccCC
Q 015182 378 RLSGKVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 378 ~~~~~v~~ti~~G~~v~~~g~~~~~ 402 (411)
.+..|+.+|++++++|++..+
T Consensus 365 ----~i~~v~~~G~~v~~~g~~~~~ 385 (389)
T TIGR01975 365 ----RIHSVIARGKLMVKDGKACVK 385 (389)
T ss_pred ----CEEEEEECCEEEEECCEEEec
Confidence 367889999999999998754
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. |
| >PRK09237 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=198.10 Aligned_cols=302 Identities=20% Similarity=0.216 Sum_probs=172.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHH-hc--CCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EK--RIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|+...+. ..+. +..+.++++||||+++++ +..+ ...+.+....... .. ..++++.+++..++
T Consensus 52 ~PG~iD~H~H~~~~~~-~~~~--~~~~~~~~~G~Ttv~~~~-~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~ 125 (380)
T PRK09237 52 SPGWIDLHVHVYPGST-PYGD--EPDEVGVRSGVTTVVDAG-SAGA--DNFDDFRKLTIEASKTRVLAFLNISRIGLLAQ 125 (380)
T ss_pred ecCEEEeeecCCCCCC-ccCC--CHHHHHHhCCcCEEEECC-CCCC--CCHHHHHHHHHhhhCcEEEEEEeeeccccccc
Confidence 6999999999985432 2222 567889999999999998 4433 5666666655433 21 12333443332222
Q ss_pred CCc-----cchHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhcc
Q 015182 78 ENA-----YNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 149 (411)
Q Consensus 78 ~~~-----~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 149 (411)
... -..++++++.+ .++.++|.++.+.....+ ..++ ++.....+++.|+++.+|+++....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~v~glk~~~~~~v~~~~-~~~~--~~~~~~~a~~~g~~v~~H~~~~~~~-------- 194 (380)
T PRK09237 126 DELADLEDIDADAVAEAVKRNPDFIVGIKARMSSSVVGDN-GIEP--LELAKAIAAEANLPLMVHIGNPPPS-------- 194 (380)
T ss_pred chhcCHhHCCHHHHHHHHHhCcCcEEEEEEEEeccccccc-CCch--HHHHHHHHHhcCCCEEEEcCCCCCC--------
Confidence 111 12455666664 579999999876422221 1233 3444444568999999999765321
Q ss_pred CcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh---------HHHHHHHHHHhHCCCCEE
Q 015182 150 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA---------SSSLDLLMEAKTNGDSIT 220 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~---------~~~~~~i~~~~~~g~~i~ 220 (411)
..++..+... + . .+.|+... ....+.+.++.++|+.+
T Consensus 195 -----------------------~~~l~~~l~~--------g-~-~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~- 240 (380)
T PRK09237 195 -----------------------LEEILELLRP--------G-D-ILTHCFNGKPNRILDEDGELRPSVLEALERGVRL- 240 (380)
T ss_pred -----------------------HHHHHhhccC--------C-C-EEEecCCCCCCCccCCCCcchHHHHHHHHCCEEE-
Confidence 1122222221 2 1 24555432 01224455555566433
Q ss_pred EEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhh
Q 015182 221 VETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299 (411)
Q Consensus 221 ~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~ 299 (411)
++... ... .+...+.+.+++|+ +.+++||..+... + ..+..
T Consensus 241 -~ig~g-------------~~~---------~~~~~~~~l~~~g~~~~~l~tD~~~~~~---------~-----~~~~~- 282 (380)
T PRK09237 241 -DVGHG-------------TAS---------FSFKVAEAAIAAGILPDTISTDIYCRNR---------I-----NGPVY- 282 (380)
T ss_pred -EecCC-------------CCc---------ccHHHHHHHHHCCCCceEEECCCCCCCc---------c-----cchHh-
Confidence 22210 000 01122334566785 5689999654321 0 00111
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE
Q 015182 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 379 (411)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~ 379 (411)
.+...+..+.+.+++++++++++|.|||++||++++|+|++|+.|||+++|.+... .+.. +... +..+.+.
T Consensus 283 -~l~~~~~~~~~~g~~~~~al~~aT~n~A~~lgl~~~G~l~~G~~ADlvv~~~~~~~-~~~~-d~~~----~~~~~~~-- 353 (380)
T PRK09237 283 -SLATVMSKFLALGMPLEEVIAAVTKNAADALRLPELGRLQVGSDADLTLFTLKDGP-FTLT-DSEG----DSLIGER-- 353 (380)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCCCCCcCCCCCcCCEEEEeCCCCC-cccc-CCCC----CEEEecC--
Confidence 12333344456789999999999999999999966899999999999999965322 1111 1110 1111111
Q ss_pred EeEEEEEEECCEEEEEcCccc
Q 015182 380 SGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 380 ~~~v~~ti~~G~~v~~~g~~~ 400 (411)
...|.+||++||+||.+-...
T Consensus 354 ~~~~~~~~v~G~~~~~~~~~~ 374 (380)
T PRK09237 354 LLTPLATVRGGKVVLTEQGSA 374 (380)
T ss_pred CCcceEEEECCEEEEccCccc
Confidence 247999999999999875443
|
|
| >PRK08393 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=204.36 Aligned_cols=218 Identities=16% Similarity=0.065 Sum_probs=133.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.+++++++++++.|+++|+++.+|+.+... ........ ..+| ++.+.+.++
T Consensus 185 ~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~-------------g~~~-----------~~~l~~~G~---- 236 (424)
T PRK08393 185 TCSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKY-------------GKSP-----------VVLLDEIGF---- 236 (424)
T ss_pred cCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHh-------------CcCH-----------HHHHHHcCC----
Confidence 478999999999999999999999975432 11111110 0111 122222222
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... +.+.++.+++.|+ ...+||..-.. .+. -.+| +.++++.|+.+++
T Consensus 237 l~~~~~~~H~~~l--~~~~l~~la~~g~--~v~~~P~sn~~-------lg~---g~~~---------~~~~~~~Gv~v~l 293 (424)
T PRK08393 237 LNEDVIAAHGVWL--SSRDIRILASAGV--TVAHNPASNMK-------LGS---GVMP---------LRKLLNAGVNVAL 293 (424)
T ss_pred CCCCcEEEEeecC--CHHHHHHHHhcCC--EEEECHHHHHh-------hcc---CCCC---------HHHHHHCCCcEEE
Confidence 2556667777754 2244556666675 44567753110 010 1122 2345677999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh---cCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCcc
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK---YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHAD 346 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~AD 346 (411)
|||..+..... +.| .+..+...+..... ..++++++++++|.|||+++|++ .|+|++|+.||
T Consensus 294 GtD~~~~~~~~-----d~~---------~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~-~G~l~~G~~AD 358 (424)
T PRK08393 294 GTDGAASNNNL-----DML---------REMKLAALLHKVHNLDPTIADAETVFRMATQNGAKALGLK-AGVIKEGYLAD 358 (424)
T ss_pred ecCCCccCCch-----hHH---------HHHHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHHHhCCC-CCccCCCCccC
Confidence 99963221100 001 11222211211111 12678999999999999999996 69999999999
Q ss_pred EEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 347 lvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
||++|.+.+...+.. ++.+... ++++ .++|..||++|++||++|+++.
T Consensus 359 lvvld~~~~~~~~~~-~~~~~~~-~~~~-----~~~v~~v~v~G~~v~~~g~~~~ 406 (424)
T PRK08393 359 IAVIDFNRPHLRPIN-NPISHLV-YSAN-----GNDVETTIVDGKIVMLDGEVLT 406 (424)
T ss_pred EEEEeCCCCCcCCCC-ChHHHee-eeCC-----CCCeeEEEECCEEEEECCeECC
Confidence 999999876665544 3333222 2222 3579999999999999999863
|
|
| >PRK12393 amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=203.79 Aligned_cols=219 Identities=14% Similarity=0.133 Sum_probs=134.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++++.++++++.|+++|+++.+|+.+... ++..... ...+| ++...+.++
T Consensus 214 ~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~-------------~g~~~-----------~~~l~~~g~---- 265 (457)
T PRK12393 214 SLPPELLREVARAARGMGLRLHSHLSETVDYVDFCREK-------------YGMTP-----------VQFVAEHDW---- 265 (457)
T ss_pred CcCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH-------------hCCCH-----------HHHHHHcCC----
Confidence 578899999999999999999999975322 1111110 01111 111222221
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... +.+.++.+++.|+ .+.+||..... .+. ..+| +.++++.|+.+++
T Consensus 266 l~~~~~~~H~~~l--~~~d~~~la~~g~--~v~~~P~sn~~-------lg~---g~~~---------~~~~~~~Gv~v~l 322 (457)
T PRK12393 266 LGPDVWFAHLVKL--DAEEIALLAQTGT--GIAHCPQSNGR-------LGS---GIAP---------ALAMEAAGVPVSL 322 (457)
T ss_pred CCCCeEEEEEecC--CHHHHHHHHHcCC--eEEECchhhhh-------hcc---cCCC---------HHHHHHCCCeEEE
Confidence 2556767777754 2334555556675 44577853110 011 1232 3455778999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH--HhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccE
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG--RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 347 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADl 347 (411)
|||..+.+... ++|. +..+....... ....++++++++++|.|||+++|++++|+|++|+.|||
T Consensus 323 GtD~~~~~~~~-----d~~~---------~~~~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~~l~~~~~G~l~~G~~ADl 388 (457)
T PRK12393 323 GVDGAASNESA-----DMLS---------EAHAAWLLHRAEGGADATTVEDVVHWGTAGGARVLGLDAIGTLAVGQAADL 388 (457)
T ss_pred ecCCcccCCCc-----cHHH---------HHHHHHHHhhhcCCCCCCCHHHHHHHHhHHHHHHhCCCCCCCcCCCCcCCE
Confidence 99964321100 1110 11111111111 11348999999999999999999955899999999999
Q ss_pred EEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 348 vv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+|+|.+.++..+.. +.. ++++.... ..+|..||++|++||++|+++.
T Consensus 389 vv~d~~~~~~~~~~-~~~-----~~~~~~~~-~~~v~~v~v~G~~v~~~~~~~~ 435 (457)
T PRK12393 389 AIYDLDDPRFFGLH-DPA-----IAPVACGG-PAPVKALLVNGRPVVENGAIPG 435 (457)
T ss_pred EEEeCCCcccCCCC-Cch-----hhhhccCC-CCCeeEEEECCEEEEECCccCC
Confidence 99999876655432 211 23333221 4679999999999999998864
|
|
| >PRK06038 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=202.77 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=138.5
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~ 176 (411)
++..+.+.. ...+++++++++++.|+++|+++.+|+.+.......+... ...+ .
T Consensus 175 v~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~------------~G~~-----------~ 228 (430)
T PRK06038 175 IKVMYGPHA---PYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQ------------YGMC-----------S 228 (430)
T ss_pred eEEEEeCCc---CccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHH------------hCCC-----------H
Confidence 444444432 2367899999999999999999999998865432222110 0001 1
Q ss_pred HHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHH
Q 015182 177 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 256 (411)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~ 256 (411)
++...+.++ .+.++.+.|+... .+ +.++.+++.|+.+ .+||...... + ...+|
T Consensus 229 i~~l~~~g~----l~~r~~~~H~~~l-~~-~~~~~la~~g~~v--~~~P~~n~~~-------~---~~~~p--------- 281 (430)
T PRK06038 229 VNYLDDIGF----LGPDVLAAHCVWL-SD-GDIEILRERGVNV--SHNPVSNMKL-------A---SGIAP--------- 281 (430)
T ss_pred HHHHHHcCC----CCCCeEEEEEecC-CH-HHHHHHHhcCCEE--EEChHHhhhh-------c---cCCCC---------
Confidence 222223221 2567777887765 22 3466666777644 4677532110 0 11122
Q ss_pred HHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH---HhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 257 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG---RKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 257 l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
+.++++.|+.+++|||..+.... .++| .+.....+.... ...+++++++++++|.|||+++|+
T Consensus 282 ~~~~~~~Gv~v~lGtD~~~~~~~-----~d~~---------~~~~~a~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~ 347 (430)
T PRK06038 282 VPKLLERGVNVSLGTDGCASNNN-----LDMF---------EEMKTAALLHKVNTMDPTALPARQVLEMATVNGAKALGI 347 (430)
T ss_pred HHHHHHCCCeEEEeCCCCccCCC-----cCHH---------HHHHHHHHHhhhccCCCCcCCHHHHHHHHhHHHHHHhCC
Confidence 33557779999999996422110 0111 011111111111 124689999999999999999999
Q ss_pred CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 334 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 334 ~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+ .|+|++|+.||||++|.+.+...|.. +... ..+|.+. ...|..||++|++||++|+++.
T Consensus 348 ~-~G~l~~G~~ADlvvld~~~~~~~p~~-~~~~----~~v~~~~--~~~v~~v~v~G~~v~~~g~~~~ 407 (430)
T PRK06038 348 N-TGMLKEGYLADIIIVDMNKPHLTPVR-DVPS----HLVYSAS--GSDVDTTIVDGRILMEDYKVLC 407 (430)
T ss_pred C-CCccCCCcccCEEEEeCCCCccCCCC-ChHH----heeEeCC--CCceeEEEECCEEEEECCeECC
Confidence 6 69999999999999998865433322 1111 1122211 2369999999999999999864
|
|
| >TIGR03314 Se_ssnA putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=200.43 Aligned_cols=226 Identities=13% Similarity=0.068 Sum_probs=138.8
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~ 175 (411)
++..+.+.. ...++++.++++.+.|+++|+++.+|+.+... ......+. ..+|
T Consensus 189 i~~~~~p~~---~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~~~-------------g~~~---------- 242 (441)
T TIGR03314 189 VEAHIGAHA---PFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHHKY-------------GKDI---------- 242 (441)
T ss_pred eEEEEecCC---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHc-------------CCCH----------
Confidence 555555432 23578999999999999999999999977532 11111111 1111
Q ss_pred HHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHH
Q 015182 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~ 255 (411)
++...+.|+. +.+..+.|+... +.+.++.+++.|+. +.+||..-... + .-.+|+
T Consensus 243 -~~~l~~~G~l----~~~~~~~H~~~~--~~~d~~~la~~g~~--v~~cP~sn~~l-------~---~G~~p~------- 296 (441)
T TIGR03314 243 -VERLADFGLL----GSKTLAAHCIYL--SDREIELLNETDTF--VVHNPESNMGN-------A---VGYNPV------- 296 (441)
T ss_pred -HHHHHHCCCC----CCCeEEEEEecC--CHHHHHHHHHcCCc--EEECHHHHhhh-------c---cCCCCH-------
Confidence 2222333322 556666776654 22344555566754 45678431110 1 012332
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc--CCCHHHHHHHHhHhHHHHhC-
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY--GVTLEQLASWWSERPAKLAG- 332 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~l~~~~al~~~T~n~A~~lg- 332 (411)
.++++.|+.++||||..+.. .| -+.++...++..... ...+.++++++|.++|++++
T Consensus 297 --~~~~~~Gv~v~LGtD~~~~d---------~~---------~em~~a~~~~~~~~~~~~~~~~~~~~~aT~~ga~al~~ 356 (441)
T TIGR03314 297 --LRMFKNGILLGLGTDGYTSD---------MF---------ESLKFANFKHKDAGGDLNAAWPESPAMLFENNNEIAER 356 (441)
T ss_pred --HHHHHCCCEEEEcCCCCCcC---------HH---------HHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 34577799999999964321 11 122332222221111 22467899999999999997
Q ss_pred -C-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 333 -Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 333 -~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+ .++|+|++|+.|||+++|.+.++.++.. ++.+ .++.+.. .++|..||++|++||++|+++.
T Consensus 357 ~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~-~~~~-----~lv~~~~-~~~V~~v~V~G~~v~~~~~~~~ 420 (441)
T TIGR03314 357 NFGAKFGRLEPGAKADLIIVDYNAPTPLTAD-NING-----HILFGMN-GGSVDSTMVNGKVVMEDREFLH 420 (441)
T ss_pred HhCCCCCCCCCCCcccEEEEcCCCCeeechh-hccc-----cceecCC-CCeeEEEEECCEEEEECCcccc
Confidence 3 4689999999999999999887766644 3332 2332222 5689999999999999999864
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. |
| >PRK09229 N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-23 Score=201.39 Aligned_cols=225 Identities=17% Similarity=0.159 Sum_probs=133.8
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~ 175 (411)
+++.+.+. ....++++.++++++.| ++|+++.+|+.+.. .+....... ..+|
T Consensus 201 ~~~~~~p~---~~~~~s~e~l~~~~~~A-~~g~~i~~H~~e~~~e~~~~~~~~-------------g~~~---------- 253 (456)
T PRK09229 201 ARLGLAPH---SLRAVTPDQLAAVLALA-APDGPVHIHIAEQTKEVDDCLAWS-------------GARP---------- 253 (456)
T ss_pred eEEEEeCC---CCCCCCHHHHHHHHHHh-cCCCceEEEeCCCHHHHHHHHHHc-------------CCCH----------
Confidence 44444443 22357899999999999 99999999996532 222111111 1111
Q ss_pred HHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHH
Q 015182 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~ 255 (411)
++...+.+ ..+.++.+.|+... .+ +.++.+++.|+ .+.+||..... .+ ...+|
T Consensus 254 -~~~l~~~g----~l~~~~~l~H~~~l-~~-~d~~~la~~g~--~v~~~P~sn~~-------lg---~g~~p-------- 306 (456)
T PRK09229 254 -VEWLLDHA----PVDARWCLVHATHL-TD-AETARLARSGA--VAGLCPTTEAN-------LG---DGIFP-------- 306 (456)
T ss_pred -HHHHHHcC----CCCCCeEEEeeccC-CH-HHHHHHHHcCC--eEEECchhhhh-------hc---CCCCC--------
Confidence 11122221 12567788888765 22 34555556675 45578853110 01 11222
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH----------hcCCCHHHHHHHHhH
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR----------KYGVTLEQLASWWSE 325 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~l~~~~al~~~T~ 325 (411)
+.++++.|+.+++|||..+.. ++|. +.+.....+... ++.+++.++|+++|.
T Consensus 307 -~~~l~~~Gv~v~lGtD~~~~~--------d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~ 368 (456)
T PRK09229 307 -AVDYLAAGGRFGIGSDSHVSI--------DLVE---------ELRLLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALA 368 (456)
T ss_pred -HHHHHHCCCeEEEecCCCCCC--------CHHH---------HHHHHHHHHHHhhcCCcccccccccchHHHHHHHHHH
Confidence 234577899999999953211 1110 111111111110 135689999999999
Q ss_pred hHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCC--CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 326 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDN--DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 326 n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~--~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
|+|+++|+ .+|+|++||.|||||+|.+.+...+. + ++.. ...|.+ ...+|..|||+||+||++|++++
T Consensus 369 ~gA~alg~-~~GsLe~Gk~ADlvvld~~~~~~~~~~~~-~~~~----~lv~~~--~~~~V~~v~V~G~~v~~~g~~~d 438 (456)
T PRK09229 369 GGAQALGR-AIGGLAVGARADLVVLDLDHPALAGREGD-ALLD----RWVFAG--GDAAVRDVWVAGRWVVRDGRHRL 438 (456)
T ss_pred HHHHHhCC-CcCCcCCCCccCEEEEeCCCccccCCChh-hHHH----HHhhcC--CCCCeeEEEECCEEEEECCccCC
Confidence 99999999 68999999999999999886422221 1 1111 111211 13479999999999999998764
|
|
| >PRK07203 putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=198.37 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=135.8
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh-hhhccCcCCccccccccCCCCHHHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH-VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~ 175 (411)
+...+.+.. ...++++.++++.+.|+++|+++++|+.+....... ..+. ..+|
T Consensus 190 v~~~~~p~~---~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~-------------g~~~---------- 243 (442)
T PRK07203 190 VEAMFGLHA---SFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKY-------------GKDI---------- 243 (442)
T ss_pred eEEEEccCC---CcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHc-------------CCCH----------
Confidence 445555432 235688999999999999999999998775432111 1111 1111
Q ss_pred HHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHH
Q 015182 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~ 255 (411)
++...+.|+ .+.+..+.|+... .+ +.++.+++.|+. +.+||..-.. . + .-.+|
T Consensus 244 -v~~l~~~Gl----l~~~~~~~H~~~~-~~-~d~~~la~~g~~--v~~~P~sn~~------l-~---~g~~p-------- 296 (442)
T PRK07203 244 -VERLADFGL----LGEKTLAAHCIYL-SD-EEIDLLKETDTF--VVHNPESNMG------N-A---VGYNP-------- 296 (442)
T ss_pred -HHHHHhCCC----CCCCcEEEEeecC-CH-HHHHHHHhcCCe--EEECchhhhh------c-c---cCCCC--------
Confidence 222333322 2556667777654 22 334445566754 4567853111 0 1 01122
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH--hcCCCHHHHHHHHhHhHHHHhC-
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR--KYGVTLEQLASWWSERPAKLAG- 332 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~l~~~~al~~~T~n~A~~lg- 332 (411)
+++++++|+.+++|||..... .| -+.++...++... ....+++++++++|.|||+++|
T Consensus 297 -~~~~~~~Gv~v~lGtD~~~~d---------~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~aT~~gA~~lg~ 357 (442)
T PRK07203 297 -VLEMIKNGILLGLGTDGYTSD---------MF---------ESYKVANFKHKHAGGDPNVGWPESPAMLFENNNKIAER 357 (442)
T ss_pred -HHHHHHCCCeEEEcCCCCCcc---------HH---------HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345677899999999963211 11 1122222222211 1124578999999999999999
Q ss_pred -C-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 333 -Q-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 333 -~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+ ++.|+|++||.||||++|.+.++..+.. ++.+ ...|... ...|..||++|++||++|+++.
T Consensus 358 ~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~-~~~~----~~v~~~~--~~~v~~v~v~G~~v~~~g~~~~ 421 (442)
T PRK07203 358 YFGAKFGILEEGAKADLIIVDYNPPTPLNED-NING----HILFGMN--GGSVDTTIVNGKVVMEDRKFLN 421 (442)
T ss_pred hcCCCCCCCCCCCccCEEEEcCCCCeecCcc-cccc----ceEeecC--CCceEEEEECCEEEEECCcccc
Confidence 4 4689999999999999998866544432 2211 1122211 4579999999999999999864
|
|
| >TIGR01792 urease_alph urease, alpha subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=202.66 Aligned_cols=295 Identities=25% Similarity=0.300 Sum_probs=170.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC----CCCCCCCCHHHH--HHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTISTETL--KLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+ ..++++++||||+++++. ++.+.......+ ..+.+.. ....++++++..
T Consensus 127 ~PGlIDtHvH~~~P~---------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa-~~~~in~g~~g~ 196 (567)
T TIGR01792 127 TAGGIDTHVHYISPQ---------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAA-DGLPINFGFTGK 196 (567)
T ss_pred EECeEEeecCCCCcc---------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHh-ccCCccEEEEeC
Confidence 699999999997653 268899999999999542 223222222222 2233333 345678777632
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ..+..+.+.++++.|+.++|.+..| ..+++.++++++.|+++|++|++|++..... +
T Consensus 197 g---~~~~~~~L~e~i~aGa~gfK~h~~y-------~~s~e~L~~al~~A~e~gv~V~iH~ET~~E~--g---------- 254 (567)
T TIGR01792 197 G---SGSGPAALIEQIEAGACGLKVHEDW-------GATPAAIDNALSVADEYDVQVAVHTDTLNES--G---------- 254 (567)
T ss_pred C---ccchHHHHHHHHHcCCcEEEeCCCC-------CCCHHHHHHHHHHHHHcCCEEEEeCCCcccc--h----------
Confidence 1 1223556777778899999987543 4689999999999999999999999543320 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC---hHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD---ASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~---~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
-++..++... +.++|..|... . ..-++|+.+...++ +-++++|..-|.-
T Consensus 255 -----------------~ve~t~~a~g---------~rpIh~~H~~G~g~g-hapdi~~~~~~~~~-~~~st~pt~p~~~ 306 (567)
T TIGR01792 255 -----------------FVEDTIAAFK---------GRTIHTYHTEGAGGG-HAPDIIVVVGYNNI-LPSSTNPTLPYTV 306 (567)
T ss_pred -----------------HHHHHHHHHC---------CCcchhHhhcCCCCC-cHHHHHHHcCCCCc-ccCCCCCCCCCcc
Confidence 0222222221 66778888653 2 35567776654443 3344555432211
Q ss_pred ccccCC-CCcce---EEcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCC
Q 015182 232 AEEIPD-GDTRF---KCAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 294 (411)
Q Consensus 232 ~~~~~~-~~~~~---~~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g 294 (411)
. -+.+ +.-.. ...|. +|.. ...+.| .+.|++.+++||..+... ....
T Consensus 307 ~-~~~e~~~m~~~~h~l~~~~~~d~~~a~~r~r~~t~~ae~~l---~d~G~~~~~~sDs~~mgr------------~~~~ 370 (567)
T TIGR01792 307 N-TIDEHLDMLMVCHHLNPKIPEDVAFAESRIRKETIAAEDVL---QDMGAISMISSDSQAMGR------------IGEV 370 (567)
T ss_pred C-chhhhcCeEEEeccCCCCCcccchhhhhhccceeccccchh---hhCCcEEEecCCchhhCc------------ccce
Confidence 0 0000 00000 00111 1111 001122 234999999999642210 0000
Q ss_pred CchhhhHHHHHHHHHHhc-------------CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCC
Q 015182 295 ISSLQFVLPVTWSYGRKY-------------GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDN 360 (411)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-------------~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~ 360 (411)
+..+. .......... .++.+ |+++|.|||+++|+ +++|+|++||.|||||||++. +.
T Consensus 371 ~~r~~---q~a~k~~~~~g~~~~~~~~~~~~rl~r~--L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~-f~--- 441 (567)
T TIGR01792 371 VTRCW---QTADKMKKQRGPLPGDSPGNDNNRVKRY--VAKYTINPAITHGISDYIGSIEVGKLADLVLWEPAF-FG--- 441 (567)
T ss_pred eechH---HHHHHHHHhcCCCcccccCChhhhHHHH--HHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCcc-cC---
Confidence 11110 0000011111 12222 99999999999999 779999999999999999762 11
Q ss_pred CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc-Cccc
Q 015182 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA 400 (411)
Q Consensus 361 ~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~-g~~~ 400 (411)
.++..|+++|+++|.. |+..
T Consensus 442 --------------------~~p~~v~~~G~i~~~~~Gd~~ 462 (567)
T TIGR01792 442 --------------------VKPDMVLKGGLIAWAIMGDPN 462 (567)
T ss_pred --------------------CChheEEECCEEEEEeCCCcc
Confidence 2357899999999976 5544
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor. |
| >TIGR02022 hutF formiminoglutamate deiminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=200.78 Aligned_cols=214 Identities=15% Similarity=0.125 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++++.++++++ ++++|+++.+|+.+.. .......+. ..+| ++...+.++
T Consensus 212 ~~s~e~l~~~~~-a~~~g~~v~~H~~e~~~e~~~~~~~~-------------G~~~-----------v~~l~~~g~---- 262 (455)
T TIGR02022 212 AVTPEQLAAVLQ-ASDRQAPVHIHVAEQQKEVDDCLAWS-------------GRRP-----------VEWLLDHGP---- 262 (455)
T ss_pred cCCHHHHHHHHH-HHhCCCceEEEECCChHHHHHHHHHh-------------CCCH-----------HHHHHHcCC----
Confidence 568999999999 8899999999996532 211111111 1111 122222221
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... .+ +.++.+++.|+ .+.+||..... .+ .-.+| +.++++.|+.+++
T Consensus 263 l~~~~~~~H~~~l-~~-~d~~~la~~g~--~v~~~P~sn~~-------lg---~g~~p---------i~~l~~~Gv~v~l 319 (455)
T TIGR02022 263 VDARWCLVHATHL-TD-EETALLARSGA--VAGLCPTTEAN-------LG---DGIFP---------AVDFVAAGGRFGI 319 (455)
T ss_pred CCCCEEEEEeecC-CH-HHHHHHHHcCC--eEEEChhhhcc-------cc---CCCCC---------HHHHHHCCCeEEE
Confidence 2567777887754 22 34555556675 45578864211 01 11233 2345778999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH----------hcCCCHHHHHHHHhHhHHHHhCCCCCCcc
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGAI 339 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~l~~~~al~~~T~n~A~~lg~~~~G~I 339 (411)
|||..+... .|. +.++...++... ...++.+++++++|.|+|+++|++ .|+|
T Consensus 320 GTD~~~~~d--------~~~---------~m~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~~-~GsL 381 (455)
T TIGR02022 320 GSDSHVVID--------VAE---------ELRQLEYGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGLA-TGGL 381 (455)
T ss_pred ECCCCCCCC--------HHH---------HHHHHHHHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCCC-CCcc
Confidence 999633211 110 112211111111 124678899999999999999994 8999
Q ss_pred cccCCccEEEEcCCCeeEeCC--CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 340 AIGNHADLVVWEPEAEFELDN--DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 340 ~~G~~ADlvv~d~~~~~~~~~--~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
++||.|||||+|.+.+...+. + ++.. ..+|.+. ...|..|||+||+||++|+++.
T Consensus 382 e~Gk~ADlvvld~~~~~~~~~~~~-~~~~----~lv~~~~--~~~V~~v~V~G~~v~~~g~~~~ 438 (455)
T TIGR02022 382 RAGARADFLTLDGDHPYLAGALGD-SLLD----RWLFAGG--GAAVRDVWVGGRWVVRDGRHAL 438 (455)
T ss_pred CCCCCcCEEEEeCCCcccCCCCch-hHHH----HHhhcCC--CCCccEEEECCEEEEECCcccc
Confidence 999999999999886544332 1 1111 1122221 3479999999999999999974
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate. |
| >PRK09228 guanine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=199.33 Aligned_cols=216 Identities=17% Similarity=0.092 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHHHHHhC-CCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARY-KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++++.++++.+.|+++ |+++++|+.+.......+.+ .+..+|. .++...+.|+
T Consensus 207 t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~------------~~g~~~~---------~~~~l~~~G~---- 261 (433)
T PRK09228 207 TSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKE------------LFPEARD---------YLDVYERYGL---- 261 (433)
T ss_pred cCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHH------------HcCCCCC---------HHHHHHHcCC----
Confidence 56789999999999998 99999999764321111110 0011110 1222233322
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... +.+.++.+++.|+ .+.+||..-+. .+. ..+| +.++++.|+.+++
T Consensus 262 l~~~~~~~H~~~l--~~~~~~~la~~g~--~v~~~P~sn~~-------lg~---g~~~---------~~~~~~~Gv~v~l 318 (433)
T PRK09228 262 LGPRAVFAHCIHL--EDRERRRLAETGA--AIAFCPTSNLF-------LGS---GLFD---------LKRADAAGVRVGL 318 (433)
T ss_pred CCCCeEEEeccCC--CHHHHHHHHHcCC--eEEECCccHHh-------hcC---CCcC---------HHHHHHCCCeEEE
Confidence 2567888898865 3344566666675 44567753211 010 1122 3345677999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEE
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLV 348 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlv 348 (411)
|||....+. . ++| .+.++...++.....+++++++++++|.|||+++|+ +++|+|++||.||||
T Consensus 319 GtD~~~~~~-~-----d~~---------~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~~~~~G~l~~Gk~ADlv 383 (433)
T PRK09228 319 GTDVGGGTS-F-----SML---------QTMNEAYKVQQLQGYRLSPFQAFYLATLGGARALGLDDRIGNLAPGKEADFV 383 (433)
T ss_pred ecCCCCCCC-C-----CHH---------HHHHHHHHHhhcccCCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCCCCEE
Confidence 999632111 0 011 011221112222235689999999999999999999 468999999999999
Q ss_pred EEcCCCeeEeCC--------CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 349 VWEPEAEFELDN--------DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 349 v~d~~~~~~~~~--------~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
++|.+..+...+ . +... .-.|.+ ....|..|||+||+|+++
T Consensus 384 v~d~~~~~~~~~~~~~~~~~~-d~~~----~lv~~~--~~~~V~~v~VdG~~v~~~ 432 (433)
T PRK09228 384 VLDPAATPLLALRTARAESLE-ELLF----ALMTLG--DDRAVAETYVAGRPVYRR 432 (433)
T ss_pred EEcCCCCccccchhcccCCHH-HHHH----HHhhcC--CccceeEEEECCEEeccC
Confidence 999875432211 0 0000 112222 145799999999999875
|
|
| >TIGR02967 guan_deamin guanine deaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=199.59 Aligned_cols=193 Identities=17% Similarity=0.085 Sum_probs=117.5
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC-CCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~ 173 (411)
.+++.+.+.. ...+++++|+++++.|+++ |+++++|+.+.. ........ ...+|.
T Consensus 170 ~i~~~~~~~~---~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~-------------~~~~~~------- 226 (401)
T TIGR02967 170 RLLYAVTPRF---APTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKEL-------------FPEAKD------- 226 (401)
T ss_pred CceEEEECCc---CCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHH-------------cCCCCc-------
Confidence 4666665532 2357889999999999999 999999997543 22211111 011111
Q ss_pred HHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhh
Q 015182 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 253 (411)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~ 253 (411)
.++...+.++ .+.+..+.|+... +.+.++.+++.|+.+ .+||...+.. + ...+|
T Consensus 227 --~~~~l~~~g~----lg~~~~~~H~~~~--~~~~~~~l~~~g~~v--~~~P~~~~~~-------~---~g~~~------ 280 (401)
T TIGR02967 227 --YLDVYDHYGL----LGRRSVFAHCIHL--SDEECQRLAETGAAI--AHCPTSNLFL-------G---SGLFN------ 280 (401)
T ss_pred --HHHHHHHCCC----CCCCeEEEecccC--CHHHHHHHHHcCCeE--EEChHHHHHh-------c---cCCCC------
Confidence 1222233322 2567778888865 234566666777644 4677532110 1 01122
Q ss_pred HHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 254 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 254 ~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
+.++++.|+.+++|||....... +.| .+.+....+......+++++++++++|.|||+++|+
T Consensus 281 ---~~~~~~~Gv~v~lGtD~~~~~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~aT~~~A~~lg~ 342 (401)
T TIGR02967 281 ---LKKALEHGVRVGLGTDVGGGTSF------SML---------QTLREAYKVSQLQGARLSPFEAFYLATLGGARALDL 342 (401)
T ss_pred ---HHHHHHCCCeEEEecCCCCCCCc------CHH---------HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhCC
Confidence 23446779999999996321110 001 011111111112234699999999999999999999
Q ss_pred -CCCCcccccCCccEEEEcCCCe
Q 015182 334 -VSKGAIAIGNHADLVVWEPEAE 355 (411)
Q Consensus 334 -~~~G~I~~G~~ADlvv~d~~~~ 355 (411)
+++|+|++||.|||+++|.+.+
T Consensus 343 ~~~~G~i~~G~~ADlvi~d~~~~ 365 (401)
T TIGR02967 343 DDRIGNFEPGKEADFVVLDPAAT 365 (401)
T ss_pred cCCccccCCCCccCEEEEcCCCC
Confidence 4689999999999999998864
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. |
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=194.59 Aligned_cols=280 Identities=15% Similarity=0.068 Sum_probs=155.5
Q ss_pred HHHHHHcCCceeEecCCCCCCCC--CCCHHHHHHHHHHHhcCCceEEEEEeeecC-CCccchHHHHHHHHCCceEEEEec
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLGLKSFM 101 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~ 101 (411)
..+.++++|+|+++|+. +..+. ...++.+.+..+..+....+++........ ........+++.++.|+..+.. +
T Consensus 103 ~~~~~l~~G~t~vr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~~~gg-~ 180 (391)
T PRK05985 103 LARAAAAAGTTAMRSHV-DVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGADVVGG-L 180 (391)
T ss_pred HHHHHHhcCcceEEeeE-ccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHcCCCEEeC-C
Confidence 35678899999999986 32222 222334433333333333333322111000 1111223466667777653322 2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHh
Q 015182 102 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 181 (411)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~ 181 (411)
.+. .....+++++.++++.|+++|+++.+|+.+..... ...+.++++.+.
T Consensus 181 ~p~---~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~---------------------------~~~~~~~~e~~~ 230 (391)
T PRK05985 181 DPA---GIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELG---------------------------AFQLERIAARTR 230 (391)
T ss_pred CCC---CcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCcc---------------------------HHHHHHHHHHHH
Confidence 222 12245679999999999999999999987643210 012334444444
Q ss_pred hhccCCCCCCceEEEEcCCCh----HHH-HHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHH
Q 015182 182 DTRTDGPAEGAHLHIVHLSDA----SSS-LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 256 (411)
Q Consensus 182 ~~~~~~~~~~~~~~i~h~~~~----~~~-~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~ 256 (411)
+.+. ..++.+.|+... ++. .++++.+++.|+.++. ++.. + ...+ .
T Consensus 231 ~~g~-----~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~--~~~~-----------~---~~~~---------~ 280 (391)
T PRK05985 231 ALGM-----QGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMT--NAPG-----------S---VPVP---------P 280 (391)
T ss_pred HhCC-----CCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEE--eCCC-----------C---CCCC---------C
Confidence 4411 236788887632 011 2567777788876542 2210 0 0012 2
Q ss_pred HHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhHhHHHHhCCCC
Q 015182 257 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQVS 335 (411)
Q Consensus 257 l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~al~~~T~n~A~~lg~~~ 335 (411)
+.++++.|+.+++|||+...+. +||. ....++. +..... ......-+++++++++|.|||+++|++.
T Consensus 281 ~~~l~~~Gv~v~lGtD~~~~~~-------~p~~----~~~~~~~-~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~ 348 (391)
T PRK05985 281 VAALRAAGVTVFGGNDGIRDTW-------WPYG----NGDMLER-AMLIGYRSGFRTDDELAAALDCVTHGGARALGLED 348 (391)
T ss_pred HHHHHHCCCeEEEecCCCCCCC-------cCCC----CCcHHHH-HHHHHHHHccCChHHHHHHHHHHcchhHHHhCCcc
Confidence 3345677999999999642110 1121 1111211 111110 0001123467999999999999999954
Q ss_pred CCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 336 ~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
++|++||.||||+||.+.+..... . ...+..|+++|++||++|
T Consensus 349 -~~l~~G~~ADlvvld~~~~~~~~~----------~--------~~~~~~v~~~G~~v~~~~ 391 (391)
T PRK05985 349 -YGLAVGARADFVLVDAETVAEAVV----------A--------VPVRRLVVRGGRIVARDG 391 (391)
T ss_pred -cCCCCCCcCCEEEECCCCHHHHHh----------h--------CCcceEEEECCEEEecCC
Confidence 469999999999999875321110 0 113567999999999886
|
|
| >PLN02303 urease | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=205.22 Aligned_cols=296 Identities=22% Similarity=0.281 Sum_probs=166.5
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCC----CCCCCCC--CHHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPL----NSDPSTI--STETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+||+||+|+|+..|+.. +.++++||||+++++. ++.+... ....++.+.+..+ ...+++.++..
T Consensus 397 tPG~ID~HVHf~~Pg~~---------~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~-~~pvn~Gf~gk 466 (837)
T PLN02303 397 TAGGIDCHVHFICPQLA---------TEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTD-DLPLNFGFTGK 466 (837)
T ss_pred EeCEEEeecCCCCCcHH---------HHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcc-cCCCcEEEEcc
Confidence 69999999999877532 4455555555555431 2333332 4567777766433 45688888753
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. +...++++.++.+.|+.+||.+..+ ..+++.+++++++|+++|+++++|+++... .++
T Consensus 467 G---~~s~l~eL~elieaGa~GfK~h~d~-------gvTpelL~raLe~AkelGVpVaIHAEdLnE--~G~--------- 525 (837)
T PLN02303 467 G---NTAKPEGLHEIIKAGAMGLKLHEDW-------GTTPAAIDNCLDVAEEYDIQVTIHTDTLNE--SGC--------- 525 (837)
T ss_pred C---cccCHHHHHHHHHcCcEEEEECCCC-------CCCHHHHHHHHHHHHHcCCEEEEecCcccc--cch---------
Confidence 2 2234667888888899999986432 357899999999999999999999887322 000
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC---ChHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS---DASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~---~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
++..++... +.++|..|-. -. ..-++|+.+...++ +-++++|..-|.-
T Consensus 526 ------------------vE~t~~a~G---------~RpIh~~h~~Ga~gg-hapdi~~~~~~~nv-lpsstnpt~p~t~ 576 (837)
T PLN02303 526 ------------------VEHSIAAFK---------GRTIHTYHSEGAGGG-HAPDIIKVCGVKNV-LPSSTNPTRPYTK 576 (837)
T ss_pred ------------------HHHHHHHHC---------CChHHHHHhcCCCCC-CCcHHHHhcCCCCc-cCCCCCCCCCCcc
Confidence 111111111 2233333321 11 23466666544333 2234455322210
Q ss_pred ccccCC-CCcceE---EcCC-----------CCChhhHHHHHHHH-hcCCccEEcCCCCCCChhhhhcccCCccccCCCC
Q 015182 232 AEEIPD-GDTRFK---CAPP-----------IRDAANKEKLWEAL-MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295 (411)
Q Consensus 232 ~~~~~~-~~~~~~---~~p~-----------lr~~~~~~~l~~~l-~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~ 295 (411)
. -+.+ +.-... ..|. +|... .+.-+.| +.|.+..++||...... ....+
T Consensus 577 n-t~~e~~dm~m~~h~l~~~~~edvafa~srir~~t--iaaed~l~d~G~~s~~~SDs~amgr------------~ge~i 641 (837)
T PLN02303 577 N-TIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAET--IAAEDILHDMGAISIISSDSQAMGR------------IGEVI 641 (837)
T ss_pred C-chhhhcCeEEeecCCCCCCcchhhhhhhhccchh--hccchhhhccCCEEEEeccchhhCc------------cccee
Confidence 0 0000 000000 0111 11110 0111122 34999999999642210 00001
Q ss_pred chhhhHHHHHHHHHH---------hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcc
Q 015182 296 SSLQFVLPVTWSYGR---------KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVH 365 (411)
Q Consensus 296 ~~~~~~~~~~~~~~~---------~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~ 365 (411)
..+...-..+ ...+ .-.++++++|+++|+|||+++|+ +++|+|++||.||||||+++. +
T Consensus 642 ~r~~q~A~k~-~~~~g~l~~~~~~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~---------f- 710 (837)
T PLN02303 642 TRTWQTAHKM-KSQRGALEPRGADNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAF---------F- 710 (837)
T ss_pred eehHHHHHHH-HHhcCCCCCccccccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEecccc---------c-
Confidence 1110000000 0000 01256899999999999999999 779999999999999999641 1
Q ss_pred cCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 366 MKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 366 ~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
..+|.+||++|++||..
T Consensus 711 --------------g~~~~~vi~~G~ivy~~ 727 (837)
T PLN02303 711 --------------GAKPEMVIKGGQIAWAQ 727 (837)
T ss_pred --------------CCCeeEEEECCEEEEcc
Confidence 12588999999999986
|
|
| >PRK07213 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=191.62 Aligned_cols=198 Identities=21% Similarity=0.179 Sum_probs=121.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh-hhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 110 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH-VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 110 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
..++.++++++++.|+++|+++++|+.+....... .... ...| ++ .+.+.|+
T Consensus 174 ~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~-------------G~~~-------v~----~~~~~G~--- 226 (375)
T PRK07213 174 NEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKY-------------GMTE-------IE----RLINLGF--- 226 (375)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHc-------------CCCh-------HH----HHHhcCC---
Confidence 35688999999999999999999999765421111 1110 1111 22 2222221
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccE
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 268 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~ 268 (411)
..+ .+.|+... +.+.++.++++|+.+ .+||..-..- +. -.+ .+.++++.|+.++
T Consensus 227 --~~~-~i~H~~~~--~~~~i~~la~~g~~v--~~~P~sn~~l-------~~---g~~---------~v~~l~~~Gv~v~ 280 (375)
T PRK07213 227 --KPD-FIVHATHP--SNDDLELLKENNIPV--VVCPRANASF-------NV---GLP---------PLNEMLEKGILLG 280 (375)
T ss_pred --CCC-EEEECCCC--CHHHHHHHHHcCCcE--EECCcchhhh-------cc---CCc---------cHHHHHHCCCEEE
Confidence 122 36787765 224466667777644 4677531110 00 112 2345677899999
Q ss_pred EcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEE
Q 015182 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 348 (411)
Q Consensus 269 ~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlv 348 (411)
+|||..+.+.. . .+..+.......+++++++++++|.|+|+++|+++.|+|++||.|||+
T Consensus 281 lGTD~~~~~~~-~-------------------~~~e~~~~~~~~~~~~~~~l~~aT~~gA~~lg~~~~G~l~~G~~ADlv 340 (375)
T PRK07213 281 IGTDNFMANSP-S-------------------IFREMEFIYKLYHIEPKEILKMATINGAKILGLINVGLIEEGFKADFT 340 (375)
T ss_pred EeeCCCCCchH-h-------------------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCCcCCcCCCCcccEE
Confidence 99997433210 0 011111112334799999999999999999999658999999999999
Q ss_pred EEcCCCeeEeCCCCCcccCCCCCCccCCceE---EeEEEEEEECCEE
Q 015182 349 VWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNL 392 (411)
Q Consensus 349 v~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~---~~~v~~ti~~G~~ 392 (411)
++|.+.+. |. ++|+..... ...|..|||+||+
T Consensus 341 v~d~~~~~--p~----------~dp~~~lV~~~~~~~v~~v~v~G~~ 375 (375)
T PRK07213 341 FIKPTNIK--FS----------KNPYASIITRCESGDIVNKILKGKL 375 (375)
T ss_pred EEcCcccc--cc----------CCchHHHhhhccCCCceEEEECCcC
Confidence 99976322 21 233332222 3479999999984
|
|
| >cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=187.00 Aligned_cols=87 Identities=21% Similarity=0.390 Sum_probs=71.5
Q ss_pred cCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 312 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
..+|++++++++|.|||++||++++|+|++|++|||+|+|++.+ .+..+ ++.+ . ....++|.+||++|+
T Consensus 425 reLSLeei~~mtT~nPAKiLGL~~kG~L~~G~~ADLvIfD~n~~-~v~~~-dl~s------~---~~~~gkV~~Tiv~Gk 493 (541)
T cd01304 425 REYSLYEIAIMTRAGPAKLLGLSDKGHLGVGADADIAIYDDDPD-QVDPS-DYEK------V---EKAFSRAAYVLKDGE 493 (541)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCcCCEEEEeCCcC-ccCch-hhcC------c---eeecCcEEEEEECCE
Confidence 45799999999999999999996689999999999999998865 44444 3321 1 235678999999999
Q ss_pred EEEEcCcccCCCCCcccc
Q 015182 392 LVYKEGNHAPAACGSPIL 409 (411)
Q Consensus 392 ~v~~~g~~~~~~~g~~~~ 409 (411)
+|+++|+++..+.|+.+-
T Consensus 494 vVv~dGeiv~~~~G~~l~ 511 (541)
T cd01304 494 IVVKDGEVVAEPWGRTYW 511 (541)
T ss_pred EEEECCEEccCCCCcEEE
Confidence 999999998777787653
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. |
| >PRK09356 imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=192.69 Aligned_cols=199 Identities=18% Similarity=0.175 Sum_probs=125.2
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~ 172 (411)
++..++.+... ..+++++++++++.|+++|+++.+|+.+..... .
T Consensus 206 ~~~~i~~~~~~------~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~-----------------------------~ 250 (406)
T PRK09356 206 LADAVDVFCET------GAFSVEQSERVLEAAKALGLPVKIHAEQLSNLG-----------------------------G 250 (406)
T ss_pred CcceEEEEecC------CCCCHHHHHHHHHHHHHCCCCEEEEEecccCCC-----------------------------H
Confidence 46667664321 246789999999999999999999997532100 0
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChh
Q 015182 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
+.... +. + ...+.|+... +.+.++++++.|+ .+.+||...+.. +. ...+
T Consensus 251 ~~~~~----~~-------~-~~~~~H~~~~--~~~~~~~la~~g~--~~~~~P~~~~~l-------~~--~~~~------ 299 (406)
T PRK09356 251 AELAA----EY-------G-ALSADHLEYL--DEAGIAAMAEAGT--VAVLLPGAFYFL-------RE--TQYP------ 299 (406)
T ss_pred HHHHH----Hc-------C-CcEehHhhcC--CHHHHHHHHHhCC--EEEECccchhhc-------Cc--ccCc------
Confidence 11111 11 1 2335676654 2234555566675 455778543210 00 0011
Q ss_pred hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhHhHHHHh
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~~~al~~~T~n~A~~l 331 (411)
.+.+++++|+++++|||+.|... ++ ..+...+.. ....+++++++++++|.|||+++
T Consensus 300 ---~~~~l~~~Gi~v~lgtD~~~~~~--------~~-----------~~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~ 357 (406)
T PRK09356 300 ---PARLLRDAGVPVALATDFNPGSS--------PT-----------ESLLLAMNMACTLFRLTPEEALAAVTINAARAL 357 (406)
T ss_pred ---hHHHHHHCCCeEEEeCCCCCCCC--------hh-----------HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHh
Confidence 23344677999999999754211 11 011222222 23568999999999999999999
Q ss_pred CC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 332 GQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 332 g~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
|+ +++|+|++||.|||+|+|.+.+..+ ++.. ...+|..||++|++||.
T Consensus 358 g~~~~~G~i~~G~~AD~vvld~~~~~~~--------------~~~~--~~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 358 GRQDTHGSLEVGKKADLVIWDAPSPAEL--------------PYHF--GVNPVETVVKNGEVVVD 406 (406)
T ss_pred CCCCCceeeCCCCcCCEEEECCCchhhh--------------hhhh--CCCCccEEEECCEEeeC
Confidence 99 6689999999999999998743111 1110 13479999999999984
|
|
| >PRK07572 cytosine deaminase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=193.63 Aligned_cols=310 Identities=18% Similarity=0.177 Sum_probs=170.0
Q ss_pred CCceeecccccCCC---CC----------------------CccCCh----HHHHHHHHcCCceeEecCCCCCCCCCCCH
Q 015182 1 MPGLIDVHAHLDDP---GR----------------------TEWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTIST 51 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~----------------------~~~~~~----~~~~~~a~~~GvTtv~d~~~~~~~~~~~~ 51 (411)
+|||||+|+|+... +. .+.+++ ...++.+++.|||+++|+.....+.....
T Consensus 50 ~PG~id~h~h~~~~~~~~~~~~~~~g~l~e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~ 129 (426)
T PRK07572 50 SPPFVDPHFHMDATLSYGLPRVNASGTLLEGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAV 129 (426)
T ss_pred cccceehhhCcchhhccCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHH
Confidence 69999999999532 11 111222 34566778999999999851112221222
Q ss_pred HHHHHHHHHHhcCCceEEEEEeeecC----CCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC
Q 015182 52 ETLKLKVDAAEKRIYVDVGFWGGLVP----ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 127 (411)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 127 (411)
+.+.+..... ...+++.... +.. ...+..+.++++++.|++.+....... .....+.++++.+++.|+++
T Consensus 130 ~a~~~~~~~~--~~~~~~~~~a-~~~~g~~~~~~~~~~~~~~l~~g~d~iGg~p~~~---~~~~~~~e~l~~~~~~A~~~ 203 (426)
T PRK07572 130 EALLEVRERV--APYLDLQLVA-FPQDGVLRSPGAVDNLERALDMGVDVVGGIPHFE---RTMADGAESVRLLCEIAAER 203 (426)
T ss_pred HHHHHHHHHh--hccceEEEEe-ccChhhccCccHHHHHHHHHHcCCCEEeCCCCCc---cccchHHHHHHHHHHHHHHc
Confidence 2222222211 2334433321 111 111234567777778876653211100 00112248999999999999
Q ss_pred CCcEEEecCCc-ccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh----
Q 015182 128 KRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA---- 202 (411)
Q Consensus 128 g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~---- 202 (411)
|+++.+|+.+. ..... +++...+...+.|+ ..++.+.|+...
T Consensus 204 g~~v~~H~~e~~~~~~~----------------------------~~~~~~~~~~~~G~-----~~~v~~~H~~~l~~~~ 250 (426)
T PRK07572 204 GLRVDMHCDESDDPLSR----------------------------HIETLAAETQRLGL-----QGRVAGSHLTSMHSMD 250 (426)
T ss_pred CCCeEEEECCCCChhHH----------------------------HHHHHHHHHHHhCC-----CCCEEEEccchhhcCC
Confidence 99999999643 22111 12223333334332 226778888542
Q ss_pred -HHHHHHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhh
Q 015182 203 -SSSLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL 280 (411)
Q Consensus 203 -~~~~~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~ 280 (411)
....+.++.++++|+.++ .||.. +++... ....|.-+. ...+.++++.|+.+++|||+..
T Consensus 251 ~~~~~~~~~~la~~g~~vv--~~P~~n~~l~~~--------~~~~~~~~g---~~~v~~l~~~GV~v~lGtD~~~----- 312 (426)
T PRK07572 251 NYYVSKLIPLMAEAGVNAI--ANPLINITLQGR--------HDTYPKRRG---MTRVPELMAAGINVAFGHDCVM----- 312 (426)
T ss_pred HHHHHHHHHHHHHcCCeEE--ECchhhhhhcCC--------CCCCCCCCC---CcCHHHHHHCCCcEEEecCCCC-----
Confidence 023456777888887554 56642 221100 000111111 1234556778999999999631
Q ss_pred hhcccCCccccCCCC-chhhhHHHHHHHHHHhcCC----CHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCe
Q 015182 281 KLLDEGNFLKAWGGI-SSLQFVLPVTWSYGRKYGV----TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 355 (411)
Q Consensus 281 k~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l----~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~ 355 (411)
++| .+.+. ..++... .. ....++ .+.++++++|.|||++||+++.| |++||.||||++|...+
T Consensus 313 -----~~~--~~~~~~~~~e~~~-~~---~~~~~~~~~~~l~~~l~~aT~~~A~~lgl~~~g-i~~G~~ADlvl~d~~~p 380 (426)
T PRK07572 313 -----DPW--YSLGSGDMLEVAH-MG---LHVAQMTGQDAMRACFDAVTVNPARIMGLEGYG-LEPGCNADLVLLQARDP 380 (426)
T ss_pred -----CCC--CCCCCCCHHHHHH-HH---HHHHcCCCHHHHHHHHHHhhcchHHhhCCCCcC-CCCCCcCCEEEEeCCCH
Confidence 112 11111 1122111 11 111223 35677789999999999995567 99999999999995323
Q ss_pred eEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 356 ~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
.. ......++..||++|++|++..
T Consensus 381 ~e------------------~i~~~~~~~~V~~~G~~v~~~~ 404 (426)
T PRK07572 381 IE------------------AIRLRAARLAVIRRGKVIARTP 404 (426)
T ss_pred HH------------------HHHhcCCceEEEECCEEEeccC
Confidence 21 1112346889999999999874
|
|
| >cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=186.52 Aligned_cols=263 Identities=21% Similarity=0.297 Sum_probs=160.6
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHH-HHHhc--CCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV-DAAEK--RIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~ 77 (411)
+|||||+|+|+..++.++.+ +++++++++||||++|++ ++.+ ...+.+.... +.+.. .+++++++++...+
T Consensus 33 ~PG~iD~H~H~~~~g~~~~~---~~~~~a~~~GvTtvvd~~-~~~~--~~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~ 106 (338)
T cd01307 33 SPGWIDLHVHVYQGGTRYGD---RPDMIGVKSGVTTVVDAG-SAGA--DNIDGFRYTVIERSATRVYAFLNISRVGLVAQ 106 (338)
T ss_pred ecCeEEeeecCCCCCcccCC---CHhHHHHcCceeEEEeCC-CCCC--CCHHHHHHHHHHhhhceEEEEEeeeccccccc
Confidence 69999999999998866554 378899999999999999 5544 4555544433 33433 35667776654433
Q ss_pred CCcc-----chHHHHHHH---HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhcc
Q 015182 78 ENAY-----NASALEALL---NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 149 (411)
Q Consensus 78 ~~~~-----~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 149 (411)
.... ..+.+.++. ..|+.++|.++........ ....+++.++.+++.|+++.+|+.+....
T Consensus 107 ~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~---~~~~l~~~~~~a~~~~~pi~vH~~~~~~~-------- 175 (338)
T cd01307 107 DELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEW---GIKPLELAKKIAKEADLPLMVHIGSPPPI-------- 175 (338)
T ss_pred cccCChhHCCHHHHHHHHHHCcCcEEEEEEEeeccccccc---CCcHHHHHHHHHHHcCCCEEEEeCCCCCC--------
Confidence 2111 122333332 3689999999875432111 22348899999999999999999864320
Q ss_pred CcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHH----------HHHHHHHhHCCCCE
Q 015182 150 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS----------LDLLMEAKTNGDSI 219 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~----------~~~i~~~~~~g~~i 219 (411)
+..++.+... + ..+.|+... .. .+.++.+.++|..
T Consensus 176 -----------------------~~~~~~~l~~--------g--~~~~H~~~g-~~~~~~~~~~~~~~~~~~~~~~G~~- 220 (338)
T cd01307 176 -----------------------LDEVVPLLRR--------G--DVLTHCFNG-KPNGIVDEEGEVLPLVRRARERGVI- 220 (338)
T ss_pred -----------------------HHHHHHHhcC--------C--CEEEeccCC-CCCCCCCCCCcHHHHHHHHHhCCEE-
Confidence 2222322221 2 124454432 11 2455666666653
Q ss_pred EEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchh
Q 015182 220 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298 (411)
Q Consensus 220 ~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~ 298 (411)
.+++-. . ... ......+++++|. +..++||..+... + .+ +
T Consensus 221 -~d~~~G-------------~-~~~--------~~~~~~~l~~~G~~~~~lstD~~~~~~---------~----~~-p-- 261 (338)
T cd01307 221 -FDVGHG-------------T-ASF--------SFRVARAAIAAGLLPDTISSDIHGRNR---------T----NG-P-- 261 (338)
T ss_pred -EEeCCC-------------C-Cch--------hHHHHHHHHHCCCCCeeecCCccccCC---------C----CC-c--
Confidence 322210 0 000 0122334566786 4678999632110 0 00 1
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCC
Q 015182 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 354 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~ 354 (411)
...+...+......+++++++++++|.|||++|+++++|+|++|+.|||+|++.+.
T Consensus 262 ~~~l~~~l~~l~~~gi~~ee~~~~~T~NpA~~lgl~~~G~l~~G~~ad~~v~~~~~ 317 (338)
T cd01307 262 VYALATTLSKLLALGMPLEEVIEAVTANPARMLGLAEIGTLAVGYDADLTVFDLKD 317 (338)
T ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCCccCCCCcCCEEEEeCCC
Confidence 11223333334456899999999999999999999668999999999999999663
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-22 Score=191.44 Aligned_cols=282 Identities=16% Similarity=0.133 Sum_probs=152.1
Q ss_pred HHHHHHcCCceeEecCCCCCCCC--CCCHHHHHHHHHHHhcCCceEEEEEeeecCC----CccchHHHHHHHHCCceEEE
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPE----NAYNASALEALLNAGVLGLK 98 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~ik 98 (411)
....+++.||||++++. +..+. ....+.+.+..+.... .+.+... .+.+. ..+..+.+++..+.|+..++
T Consensus 101 ~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~g~~~~~ 176 (398)
T cd01293 101 ALELAIAHGTTAIRTHV-DVDPAAGLKALEALLELREEWAD--LIDLQIV-AFPQHGLLSTPGGEELMREALKMGADVVG 176 (398)
T ss_pred HHHHHHHcChhheeeee-cccccccchHHHHHHHHHHHhhc--cceEEEE-eccCccccCCCCHHHHHHHHHHhCCCEEe
Confidence 45667899999999876 22221 0112223222222211 2222211 11111 11222334455555654333
Q ss_pred EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHH
Q 015182 99 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178 (411)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~ 178 (411)
.+ .+. +...+++++++++++.|+++|+++.+|+.+...... ..+.+.++
T Consensus 177 ~~-~~~---~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~---------------------------~~~~~~~~ 225 (398)
T cd01293 177 GI-PPA---EIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGS---------------------------RTLEELAE 225 (398)
T ss_pred CC-CCC---cCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcch---------------------------hHHHHHHH
Confidence 22 221 113467899999999999999999999976432100 11233344
Q ss_pred HHhhhccCCCCCCceEEEEcCCChH-----HHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhh
Q 015182 179 VAKDTRTDGPAEGAHLHIVHLSDAS-----SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 253 (411)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~h~~~~~-----~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~ 253 (411)
.+.+.++ ..++.+.|+.... +..+.++.++++|+.++ .||...+..... . ...|... .
T Consensus 226 ~~~~~g~-----~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~--~~p~s~~~l~~~-~------~~~~~~~---~ 288 (398)
T cd01293 226 EAERRGM-----QGRVTCSHATALGSLPEAEVSRLADLLAEAGISVV--SLPPINLYLQGR-E------DTTPKRR---G 288 (398)
T ss_pred HHHHhCC-----CCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEE--eCCCcchhhccc-c------cCCCCCC---C
Confidence 4444421 2356788876430 12366888888887544 566432111000 0 0001111 1
Q ss_pred HHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCC-chhhhHHHHHHHHHHhcCC----CHHHHHHHHhHhHH
Q 015182 254 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI-SSLQFVLPVTWSYGRKYGV----TLEQLASWWSERPA 328 (411)
Q Consensus 254 ~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l----~~~~al~~~T~n~A 328 (411)
...+.++++.|+.+++|||.... ++ .+.+. ..++ .+.. .....++ +.+++|+++|.|+|
T Consensus 289 ~~~~~~~~~~Gv~v~lGTD~~~~----------~~--~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~al~~aT~~~A 352 (398)
T cd01293 289 VTPVKELRAAGVNVALGSDNVRD----------PW--YPFGSGDMLE-VANL---AAHIAQLGTPEDLALALDLITGNAA 352 (398)
T ss_pred CCcHHHHHHCCCeEEECCCCCCC----------CC--cCCCCCCHHH-HHHH---HHHHHcCCChhhHHHHHHhcChhhh
Confidence 23445667789999999996321 11 01111 1111 1111 1112233 44889999999999
Q ss_pred HHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 329 KLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 329 ~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
+++|+ +.|+|++||.||||++|.+++..+ .. ...++..||++|+++
T Consensus 353 ~~lg~-~~G~l~~Gk~ADlv~~d~~~~~~~------~~------------~~~~~~~v~~~G~~~ 398 (398)
T cd01293 353 RALGL-EDYGIKVGCPADLVLLDAEDVAEA------VA------------RQPPRRVVIRKGRVV 398 (398)
T ss_pred hhcCC-cCcccccCCcceEEEECCCCHHHH------Hh------------cCCCccEEEECCEEC
Confidence 99999 689999999999999998853211 10 013688999999874
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. |
| >PRK09230 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=187.53 Aligned_cols=311 Identities=19% Similarity=0.230 Sum_probs=169.8
Q ss_pred CCceeecccccCCC---CCC----------------------ccCCh----HHHHHHHHcCCceeEecCCCCCCCCCCCH
Q 015182 1 MPGLIDVHAHLDDP---GRT----------------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTIST 51 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~~----------------------~~~~~----~~~~~~a~~~GvTtv~d~~~~~~~~~~~~ 51 (411)
+|||||+|+|+... +.. +.+++ ....+.+++.|||+++++.+...+....+
T Consensus 54 ~PGlid~H~H~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~~~~~~ 133 (426)
T PRK09230 54 IPPFIEPHIHLDTTQTAGEPNWNQSGTLFEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPTLTAL 133 (426)
T ss_pred ccceeEEEEccccceecCCCccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCcchhHH
Confidence 79999999999743 110 11122 23455678999999999872111211112
Q ss_pred HHHHHHHHHHhcCCceEEEEEeeecC---CCccchHHHHHHHHCCceEEEEeccCCCCCCCC-CCCHHHHHHHHHHHHhC
Q 015182 52 ETLKLKVDAAEKRIYVDVGFWGGLVP---ENAYNASALEALLNAGVLGLKSFMCPSGINDFP-MTNASHIKEGLSVLARY 127 (411)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~-~~~~~~l~~~~~~a~~~ 127 (411)
+.+.+..+..+. ..+++...-... ........+.+..+.+...+.. . +. ..+. ..+.+.+..+++.|+++
T Consensus 134 ~a~~~~~~~~~~--~~~~~i~a~~~~~~~~~~~~~~~l~~a~~~~~~~vg~-~-p~--~~~~~~~~~e~l~~~~~~A~~~ 207 (426)
T PRK09230 134 KAMLEVKEEVAP--WVDLQIVAFPQEGILSYPNGEALLEEALRLGADVVGA-I-PH--FEFTREYGVESLHKAFALAQKY 207 (426)
T ss_pred HHHHHHHHHhhC--cceEEEEeccCccccCCccHHHHHHHHHHcCCCEEeC-C-CC--ccccchhHHHHHHHHHHHHHHh
Confidence 233333333332 233332210000 0111223344444555432321 1 11 0111 12578999999999999
Q ss_pred CCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH---
Q 015182 128 KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS--- 204 (411)
Q Consensus 128 g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~--- 204 (411)
|+++.+|+.+...... ......+++..+.++ +.++.+.|+... .
T Consensus 208 g~~~~~H~~E~~~~~~---------------------------~~~~~~~~~~~~~gl-----~~~v~~~H~~~l-~~~~ 254 (426)
T PRK09230 208 DRLIDVHCDEIDDEQS---------------------------RFVETVAALAHREGM-----GARVTASHTTAM-HSYN 254 (426)
T ss_pred CCCcEEEECCCCCcch---------------------------HHHHHHHHHHHHhCC-----CCCEEEEecCch-hcCC
Confidence 9999999986432110 012234444444421 567778887654 2
Q ss_pred ---HHHHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhh
Q 015182 205 ---SLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL 280 (411)
Q Consensus 205 ---~~~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~ 280 (411)
..+.++.++++|+. +.+||.. +++.. .....|.-+.. ..+.++++.|+.+++|||+. .
T Consensus 255 ~~~~~~~~~~La~~gv~--vv~cP~sn~~l~~--------~~~~~p~~~g~---~pi~~l~~aGv~V~lGTD~~-~---- 316 (426)
T PRK09230 255 GAYTSRLFRLLKMSGIN--FVANPLVNIHLQG--------RFDTYPKRRGI---TRVKEMLEAGINVCFGHDDV-F---- 316 (426)
T ss_pred HHHHHHHHHHHHHcCCe--EEECcchhhhhcC--------CCCCCCCCCCC---cCHHHHHHCCCeEEEecCCC-C----
Confidence 45577778887864 4567864 22211 00011111111 22345677799999999963 1
Q ss_pred hhcccCCccccCCCCchhhhHHHHHHHHHHhcCC---CHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeE
Q 015182 281 KLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV---TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 357 (411)
Q Consensus 281 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l---~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~ 357 (411)
++|. +.|...+...+.... .....+ ++.++++++|.|||++||+++.| |++||.||||+||.+.+..
T Consensus 317 -----d~~~--~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~l~maT~~gA~alg~~~~g-le~G~~ADlv~~~~~~~~~ 386 (426)
T PRK09230 317 -----DPWY--PLGTANMLQVLHMGL--HVCQLMGYGQINDGLNLITTHSARTLNLQDYG-IEVGNPANLIILPAENGFD 386 (426)
T ss_pred -----CCCc--CCCCCCHHHHHHHHH--HHHhhCChhhHHHHHHHHhcchhHHhCCCCcC-CCCCCcCCEEEEeCCCHHH
Confidence 2231 222211111111111 111122 36899999999999999995577 9999999999999754322
Q ss_pred eCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 358 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 358 ~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+ .. ....+..|+++|++|+..
T Consensus 387 ~------~~------------~~~~~~~v~~~G~~v~~~ 407 (426)
T PRK09230 387 A------VR------------RQVPVRYSIRHGKVIAET 407 (426)
T ss_pred H------Hh------------ccCCceEEEECCEEEecc
Confidence 1 10 023578999999999966
|
|
| >cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=190.12 Aligned_cols=205 Identities=16% Similarity=0.133 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++++.++++++.|++ |+++.+|+.+... ........ ..+| + +...+.+ .
T Consensus 203 ~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~-------------g~~~-------i----~~l~~~g----~ 253 (418)
T cd01313 203 AVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAH-------------GRRP-------V----ELLLDHG----H 253 (418)
T ss_pred CCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHc-------------CCCH-------H----HHHHHcC----C
Confidence 5789999999999999 9999999965321 11111000 1111 1 1222221 1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.++.+.|+... .+ +.++.+++.|+ .+.+||...+.- +. ..+|+ .++++.|+.+++
T Consensus 254 l~~~~~~~H~~~l-~~-~~~~~la~~g~--~v~~~P~sn~~l-------g~---g~~p~---------~~l~~~Gv~v~l 310 (418)
T cd01313 254 LDARWCLVHATHL-TD-NETLLLGRSGA--VVGLCPTTEANL-------GD---GIFPA---------AALLAAGGRIGI 310 (418)
T ss_pred CCCCEEEEeCCCC-CH-HHHHHHHHcCC--EEEECCCchhhc-------cC---CCCCH---------HHHHHCCCcEEE
Confidence 3677888898865 32 44666667675 445788642210 11 12332 345777999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---------hcCCCHHHHHHHHhHhHHHHhCCCCCCccc
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---------KYGVTLEQLASWWSERPAKLAGQVSKGAIA 340 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~l~~~~al~~~T~n~A~~lg~~~~G~I~ 340 (411)
|||...... .|. +.+.....+... ...++++++++++|.|+|+++|++ +|+|+
T Consensus 311 GtD~~~~~d--------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~-~Gsle 372 (418)
T cd01313 311 GSDSNARID--------LLE---------ELRQLEYSQRLRDRARNVLATAGGSSARALLDAALAGGAQALGLA-TGALE 372 (418)
T ss_pred ecCCCCCcC--------HHH---------HHHHHHHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHhCCC-CCeEC
Confidence 999532110 110 111111111111 237999999999999999999997 99999
Q ss_pred ccCCccEEEEcCCCeeEeCCC-CCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 341 IGNHADLVVWEPEAEFELDND-HPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 341 ~G~~ADlvv~d~~~~~~~~~~-~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
+||.|||||+|.+.++..+.. ++... .-.|.+. ...|..|||+|+
T Consensus 373 ~Gk~ADlvvld~~~~~~~p~~~~~~~~----~lv~~~~--~~~V~~v~V~G~ 418 (418)
T cd01313 373 AGARADLLSLDLDHPSLAGALPDTLLD----AWVFAAG--DREVRDVVVGGR 418 (418)
T ss_pred CCCccCEEEEcCCCccccCCCchhHHH----HHeecCC--CCceeEEEeCCC
Confidence 999999999999877665531 02111 1122221 347999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-22 Score=188.77 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=128.0
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhh-hccCcCCcccc-ccc-------cCCCCHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK-LEDDTLDTRSY-STY-------LKTRPPS 167 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~-~~~~~~~~~~~-~~~-------~~~~p~~ 167 (411)
++..+.+.. ...++++.++++.+.|+++|+++++|+.+.......+. +.|. ...+ ... ...+|
T Consensus 148 v~~~~~p~a---~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~---~~~~~~~~~~~~~~~~g~~p-- 219 (381)
T cd01312 148 FIPAISPHA---PYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGW---FKHFWESFLKLPKPKKLATA-- 219 (381)
T ss_pred eEEEECCCC---CcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccc---hhhHhhhhcccccccCCCCH--
Confidence 556565542 23568899999999999999999999876533221111 1000 0000 000 01111
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCC
Q 015182 168 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 247 (411)
Q Consensus 168 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~ 247 (411)
++...+.++ .+.++.+.|+... . .+.++.+++.|+. +.+||..-.. .+. ..+|
T Consensus 220 ---------v~~l~~~g~----L~~~~~~~H~~~l-~-~~~~~~l~~~g~~--v~~~P~sn~~-------lg~---g~~p 272 (381)
T cd01312 220 ---------IDFLDMLGG----LGTRVSFVHCVYA-N-LEEAEILASRGAS--IALCPRSNRL-------LNG---GKLD 272 (381)
T ss_pred ---------HHHHHHcCC----CCCCcEEEECCcC-C-HHHHHHHHHcCCe--EEECcchhhh-------hcC---CCcC
Confidence 122233322 2567888998865 3 3455666677764 4567742110 010 1122
Q ss_pred CCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh--cCCCHHHHHHHHhH
Q 015182 248 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK--YGVTLEQLASWWSE 325 (411)
Q Consensus 248 lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~l~~~~al~~~T~ 325 (411)
+.++++.|+.+++|||....+.. ...++ .+.......+. ..+++.++++++|.
T Consensus 273 ---------~~~~~~~Gv~v~lGtD~~~~~~~---------------~d~~~-~~~~~~~~~~~~~~~~~~~~~l~~aT~ 327 (381)
T cd01312 273 ---------VSELKKAGIPVSLGTDGLSSNIS---------------LSLLD-ELRALLDLHPEEDLLELASELLLMATL 327 (381)
T ss_pred ---------HHHHHHCCCcEEEeCCCCccCCC---------------CCHHH-HHHHHHHhcccccccCCHHHHHHHHHH
Confidence 33557789999999996432110 01011 11111111111 13688999999999
Q ss_pred hHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 326 RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 326 n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
|+|++||++ .|+|++||.||||++|.+.+. .+. +.|+.-.-..+.|..|||+||
T Consensus 328 ~gA~alg~~-~Gsle~Gk~ADlvv~d~~~~~-~~~----------~~~~~~~~~~~~v~~v~v~G~ 381 (381)
T cd01312 328 GGARALGLN-NGEIEAGKRADFAVFELPGPG-IKE----------QAPLQFILHAKEVRHLFISGK 381 (381)
T ss_pred HHHHHhCCC-CCccCCCCcccEEEEeCCCcC-CCC----------ccHHHHHHccCCCCEEEecCC
Confidence 999999997 899999999999999987642 121 112111112457999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=187.18 Aligned_cols=194 Identities=19% Similarity=0.134 Sum_probs=124.3
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
.++.+++++... ...+.++++++++.|+++|+++.+|+.+.....
T Consensus 176 ~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~----------------------------- 220 (371)
T cd01296 176 NLADFCDVFCEK------GAFSLEQSRRILEAAKEAGLPVKIHADELSNIG----------------------------- 220 (371)
T ss_pred CCCCEEEEeecC------CccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCC-----------------------------
Confidence 567788875322 245689999999999999999999998643210
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
.+.... .. +. ..+.|+... +.+.++.+++.|+. ..+||...+.. +. ..+|
T Consensus 221 ~~~~~~----~~-------g~-~~i~H~~~~--~~~~i~~la~~g~~--v~~~P~~~~~l-------~~---~~~~---- 270 (371)
T cd01296 221 GAELAA----EL-------GA-LSADHLEHT--SDEGIAALAEAGTV--AVLLPGTAFSL-------RE---TYPP---- 270 (371)
T ss_pred HHHHHH----Hc-------CC-CeeHHhcCC--CHHHHHHHHHcCCe--EEEChHHHHHh-------CC---CCCC----
Confidence 111111 11 21 235676654 23566677777764 45677543221 10 0233
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhHhHHHH
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~~~al~~~T~n~A~~ 330 (411)
++++++.|+++++|||+.|.... ...+...+.. ....+++++++++++|.|||++
T Consensus 271 -----~~~l~~~Gv~v~lgsD~~p~~~~-------------------~~~l~~~~~~~~~~~~l~~~~al~~aT~~~A~~ 326 (371)
T cd01296 271 -----ARKLIDAGVPVALGTDFNPGSSP-------------------TSSMPLVMHLACRLMRMTPEEALTAATINAAAA 326 (371)
T ss_pred -----HHHHHHCCCcEEEecCCCCCCCh-------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34557889999999997543210 0011222222 2356899999999999999999
Q ss_pred hCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 331 AGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 331 lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
+|+ +++|+|++||.|||||+|.+.+..+. +.. ....|..||++|
T Consensus 327 lg~~~~~G~i~~G~~ADlvv~d~~~~~~~~--------------~~~--~~~~v~~v~~~G 371 (371)
T cd01296 327 LGLGETVGSLEVGKQADLVILDAPSYEHLA--------------YRF--GVNLVEYVIKNG 371 (371)
T ss_pred hCCCCCceeeCCCCCcCEEEECCCchHhhh--------------hhc--CCCCceEEEeCc
Confidence 999 57899999999999999988542221 110 023588999988
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. |
| >TIGR01224 hutI imidazolonepropionase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=187.11 Aligned_cols=194 Identities=21% Similarity=0.179 Sum_probs=122.2
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~ 172 (411)
++.+++++- +. ...+.+.++++++.|+++|+++.+|+.+..... .
T Consensus 181 ~v~~~~~~~-~~-----~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~-----------------------------~ 225 (377)
T TIGR01224 181 LASFADVFC-EA-----GVFSVEQSRRILQAAQEAGLPVKLHAEELSNLG-----------------------------G 225 (377)
T ss_pred CCCeeEEEe-cC-----CCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-----------------------------H
Confidence 366776542 11 245678999999999999999999997642110 1
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChh
Q 015182 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
+..+.. . + +..+.|+... +.+.++.+++.|+ .+++||...+.. + ...+|
T Consensus 226 ~~~~~~----~-------g-~~~~~H~~~~--~~~~l~~la~~g~--~~~~~P~~~~~l-------~---~~~~p----- 274 (377)
T TIGR01224 226 AELAAK----L-------G-AVSADHLEHA--SDAGIKALAEAGT--VAVLLPGTTFYL-------R---ETYPP----- 274 (377)
T ss_pred HHHHHH----c-------C-CCccHHHhcC--CHHHHHHHHhcCC--EEEECchHHHhc-------C---CcCcc-----
Confidence 111111 1 1 1234566544 2345666667675 456788643211 1 01122
Q ss_pred hHHHHHHHHhcCCccEEcCCCCC-CChhhhhcccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhHhHHHH
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p-~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~al~~~T~n~A~~ 330 (411)
+.++++.|+.+++|||+.| .+. + . .+...+. .....+++++++++++|.|||++
T Consensus 275 ----~~~l~~~Gv~v~lgTD~~~~~~~---------~---------~--~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~ 330 (377)
T TIGR01224 275 ----ARQLIDYGVPVALATDLNPGSSP---------T---------L--SMQLIMSLACRLMKMTPEEALHAATVNAAYA 330 (377)
T ss_pred ----HHHHHHCCCCEEEECCCCCCCCh---------h---------H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3345677999999999754 221 1 0 1111111 12356899999999999999999
Q ss_pred hCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEE
Q 015182 331 AGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 392 (411)
Q Consensus 331 lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~ 392 (411)
+|+ +++|+|++||.|||||||.+.+..+ |+.. ...+|..||++||+
T Consensus 331 lg~~~~~G~l~~G~~ADlvv~d~~~~~~~--------------~~~~--~~~~v~~v~v~G~~ 377 (377)
T TIGR01224 331 LGLGEERGTLEAGRDADLVILSAPSYAEI--------------PYHY--GVNHVHAVIKNGNI 377 (377)
T ss_pred hCCCCCceeeCCCCcCCEEEEcCCChHHh--------------hhhc--CCCCceEEEECCCC
Confidence 999 5589999999999999998854221 1111 12379999999984
|
This enzyme catalyzes the third step in histidine degradation. |
| >cd01303 GDEase Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=185.86 Aligned_cols=209 Identities=15% Similarity=0.046 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHHHhCC-CcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 111 MTNASHIKEGLSVLARYK-RPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g-~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
.++++.++++++.|+++| +++++|+.+... .+......+ ...+ .++...+.|+
T Consensus 204 ~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g-----------~~~~-----------p~~~l~~~G~--- 258 (429)
T cd01303 204 SCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFP-----------GARD-----------YLDVYDKYGL--- 258 (429)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcC-----------CCCC-----------HHHHHHHCCC---
Confidence 568899999999999999 999999965432 111111000 0011 1222333322
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccE
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 268 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~ 268 (411)
.+.++.+.|+... +.+.++.+++.|+.+ .+||..... ++ ...+| +.++++.|+.++
T Consensus 259 -l~~~~~l~H~~~l--~~~~~~~l~~~g~~v--~~~P~sn~~-------l~---~g~~~---------~~~~~~~Gv~v~ 314 (429)
T cd01303 259 -LTEKTVLAHCVHL--SEEEFNLLKERGASV--AHCPTSNLF-------LG---SGLFD---------VRKLLDAGIKVG 314 (429)
T ss_pred -CCCCcEEEeCCCC--CHHHHHHHHHcCCEE--EECccchhh-------hc---cCCCC---------HHHHHHCCCeEE
Confidence 2567888898865 234566666777644 467753211 01 01122 345577899999
Q ss_pred EcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH------hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccc
Q 015182 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR------KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAI 341 (411)
Q Consensus 269 ~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~ 341 (411)
+|||..+.... ++|. +..+...+.... ..+++++++++++|.|||+++|+ +++|+|++
T Consensus 315 lGtD~~~~~~~------d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~gA~~lg~~~~~Gsle~ 379 (429)
T cd01303 315 LGTDVGGGTSF------SMLD---------TLRQAYKVSRLLGYELGGHAKLSPAEAFYLATLGGAEALGLDDKIGNFEV 379 (429)
T ss_pred EeccCCCCCCc------cHHH---------HHHHHHHHHHhhccccCCcCCCCHHHHHHHHhhHHHHHcCCCCCCcCcCC
Confidence 99996432110 1110 111111111111 13579999999999999999999 56899999
Q ss_pred cCCccEEEEcCCCeeEe-CC-------CCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 342 GNHADLVVWEPEAEFEL-DN-------DHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 342 G~~ADlvv~d~~~~~~~-~~-------~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
||.|||||+|.+.+... |. . +... .-.|.+. ...|..|||+|
T Consensus 380 Gk~ADlvvld~~~~~~~~p~~~~~~~~~-d~~~----~lV~~~~--~~~V~~v~V~G 429 (429)
T cd01303 380 GKEFDAVVIDPSATPLLADRMFRVESLE-EALF----KFLYLGD--DRNIREVYVAG 429 (429)
T ss_pred CCccCEEEEcCCCccccccccccccchh-hHHH----HHeeeCC--CCCeeEEEeCC
Confidence 99999999998865332 21 1 1111 1223321 34699999998
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. |
| >PRK14085 imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-21 Score=182.97 Aligned_cols=177 Identities=16% Similarity=0.108 Sum_probs=116.1
Q ss_pred HHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHH
Q 015182 89 LLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 168 (411)
Q Consensus 89 ~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 168 (411)
..+..+..+|++.+. ..++.++++++++.|+++|+++.+|+.+....
T Consensus 187 ~~~~~~~~idi~~~~------~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~--------------------------- 233 (382)
T PRK14085 187 AVAPHARWIDVFCER------GAFDEDQSRRVLTAGRAAGLGLRVHGNQLGPG--------------------------- 233 (382)
T ss_pred HHHHhCCeEEEEecC------CCCCHHHHHHHHHHHHHcCCCeEEEeCcccCC---------------------------
Confidence 344557778887642 24688999999999999999999999753210
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCC
Q 015182 169 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 248 (411)
Q Consensus 169 e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~l 248 (411)
..+..+++ . |. ..+.|+... +.+.++.+++.|+ .+.++|.+.+.. +.
T Consensus 234 --~~v~~~~~----~-------g~-~~i~H~~~l--~~~~~~~la~~gv--~~~~~P~~~~~~-------~~-------- 280 (382)
T PRK14085 234 --PGVRLAVE----L-------GA-ASVDHCTYL--TDADVDALAGSGT--VATLLPGAEFST-------RQ-------- 280 (382)
T ss_pred --hHHHHHHH----c-------CC-CcHHHhCCC--CHHHHHHHHHcCC--EEEECcHHHHhc-------CC--------
Confidence 01222222 1 21 236677754 3355666667775 555677642210 00
Q ss_pred CChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhHhH
Q 015182 249 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERP 327 (411)
Q Consensus 249 r~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~al~~~T~n~ 327 (411)
....+.++++.|+++++|||+.|... + + . .+..... .....+++++++++++|.||
T Consensus 281 ----~~~~~~~l~~aGv~v~lgsD~~~~~~---------~-----~---~--~~~~~~~~~~~~~~l~~~~al~~aT~~~ 337 (382)
T PRK14085 281 ----PYPDARRLLDAGVTVALASDCNPGSS---------Y-----T---S--SMPFCVALAVRQMGMTPAEAVWAATAGG 337 (382)
T ss_pred ----CCchHHHHHHCCCcEEEEeCCCCCCC---------h-----H---H--HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 01234556777999999999754321 1 0 0 1111111 23356899999999999999
Q ss_pred HHHhCCCCCCcccccCCccEEEEcCCC
Q 015182 328 AKLAGQVSKGAIAIGNHADLVVWEPEA 354 (411)
Q Consensus 328 A~~lg~~~~G~I~~G~~ADlvv~d~~~ 354 (411)
|+++|+++.|+|++|+.|||+|+|.+.
T Consensus 338 A~~lg~~~~G~l~~G~~ADlvv~d~~~ 364 (382)
T PRK14085 338 ARALRRDDVGVLAVGARADLHVLDAPS 364 (382)
T ss_pred HHHcCCCCCCCcCCCCCCCEEEEcCCC
Confidence 999999658999999999999999874
|
|
| >TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=177.52 Aligned_cols=86 Identities=22% Similarity=0.331 Sum_probs=68.2
Q ss_pred hcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 311 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 311 ~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
+..+|++|+++++|.|||++||++++|+|++|++|||+|+|.+..+..+ . +.... .....|.+||++|
T Consensus 427 ~Re~sL~EI~~mtTanPAkaLGL~dkG~L~pGa~ADIaI~D~~~~~~~~-~---------~~~v~--~~~~~v~~Tik~G 494 (556)
T TIGR03121 427 DREYSLYEIAIMTRAGPAKLLGLTDRGHLGVGADADIAVYDINPDDVDT-D---------YADVE--KAFSTALYVFKDG 494 (556)
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcCCEEEEeCcccccCC-c---------hHHHh--hccCCccEEEECC
Confidence 4569999999999999999999966899999999999999977433211 1 11111 1134689999999
Q ss_pred EEEEEcCcccCCCCCccc
Q 015182 391 NLVYKEGNHAPAACGSPI 408 (411)
Q Consensus 391 ~~v~~~g~~~~~~~g~~~ 408 (411)
++|+++|+++..+.|+.+
T Consensus 495 ~vV~~dGei~~~~~G~~~ 512 (556)
T TIGR03121 495 EIVVKDGEIVETPWGRTY 512 (556)
T ss_pred EEEEECCEEccCCCCcEE
Confidence 999999999988888765
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. |
| >PRK06846 putative deaminase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-20 Score=179.60 Aligned_cols=300 Identities=14% Similarity=0.130 Sum_probs=167.7
Q ss_pred CCceeecccccCCCCCC-cc------------------------CCh----HHHHHHHHcCCceeEecCCCCCCCC--CC
Q 015182 1 MPGLIDVHAHLDDPGRT-EW------------------------EGF----PSGTKAAAAGGITTLIDMPLNSDPS--TI 49 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~-~~------------------------~~~----~~~~~~a~~~GvTtv~d~~~~~~~~--~~ 49 (411)
+|||||+|+|+..+... .. +.. .......++.|+|+++++. +..+. ..
T Consensus 66 ~Pg~iD~H~H~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v-~~~~~~~~~ 144 (410)
T PRK06846 66 LPAFREMHIHLDKTYYGGPWKACRPAKTIQDRIELEQKELPELLPTTQERAEKLIELLQSKGATHIRSHC-NIDPVIGLK 144 (410)
T ss_pred ecCEEeeeecccchhhccchhhcCCcccHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHhCCccEEEEEE-eeCcccccc
Confidence 69999999999764210 00 000 1234456678999999886 33332 12
Q ss_pred CHHHHHHHHHHHhcCCceEEEEEeeecCC---CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh
Q 015182 50 STETLKLKVDAAEKRIYVDVGFWGGLVPE---NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 126 (411)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 126 (411)
..+.+.+.++..+. .+...... +... .......+.+..+.|+..++.+ .+.. ....+.++++++++.|++
T Consensus 145 ~~~a~~e~l~e~~~--~v~~~~~a-~~~~g~~~~~~~~lL~~al~~Ga~~i~gl-~p~~---~~~~~~~~l~~~~~lA~~ 217 (410)
T PRK06846 145 NLENLQAALERYKD--GFTYEIVA-FPQHGLLRSNSEPLMREAMKMGAHLVGGV-DPAS---VDGAIEKSLDTMFQIAVD 217 (410)
T ss_pred hHHHHHHHHHHhhC--cceEEEEe-ccCcccCCccHHHHHHHHHHcCCCEEeCC-CCcc---CCcCHHHHHHHHHHHHHH
Confidence 22333333322222 23322211 1111 1122345777778898877643 2221 123567899999999999
Q ss_pred CCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC----h
Q 015182 127 YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD----A 202 (411)
Q Consensus 127 ~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~----~ 202 (411)
+|+++.+|+.+..... ...+++.++...+.++ ..++++.|+.. .
T Consensus 218 ~g~~v~~Hv~e~~~~~---------------------------~~~~~~~~~~~~~~gl-----~~~v~~~H~~~l~~~~ 265 (410)
T PRK06846 218 FNKGVDIHLHDTGPLG---------------------------VATIKYLVETTEEAQW-----KGKVTISHAFALGDLN 265 (410)
T ss_pred hCCCcEEEECCCCChh---------------------------HHHHHHHHHHHHHhCC-----CCCEEEEecchhhcCC
Confidence 9999999988543210 0123445555555532 23788899863 1
Q ss_pred HHHH-HHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhh
Q 015182 203 SSSL-DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 281 (411)
Q Consensus 203 ~~~~-~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k 281 (411)
++++ ++++.+++.|+.++.. .| + +. -.+| +.++++.|+.+++|||.. ..
T Consensus 266 ~~e~~~li~~la~~g~~v~~~-~~----~--------~~---g~~p---------~~~l~~~Gv~v~lGtD~~-~~---- 315 (410)
T PRK06846 266 EEEVEELAERLAAQGISITST-VP----I--------GR---LHMP---------IPLLHDKGVKVSLGTDSV-ID---- 315 (410)
T ss_pred HHHHHHHHHHHHHcCCeEEEe-CC----C--------CC---CCCC---------HHHHHhCCCeEEEecCCC-CC----
Confidence 0222 3456777888766531 11 0 00 1133 334566799999999963 21
Q ss_pred hcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeC
Q 015182 282 LLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELD 359 (411)
Q Consensus 282 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~ 359 (411)
+|. |.+...+-..+........ ....++.++++++|.++ +.+++ ..+|+|+|||.|||||||.+.+..
T Consensus 316 -----~~~--p~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~a-~~l~~~~~~G~l~~G~~ADlvlld~~~~~~-- 385 (410)
T PRK06846 316 -----HWS--PFGTGDMLEKANLLAELYRWSDERSLSRSLALATGGV-LPLNDEGERVWPKVGDEASFVLVDASCSAE-- 385 (410)
T ss_pred -----CCc--CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCc-cccccCCCccCCCCCCcccEEEEeCCChHH--
Confidence 111 1121111111211111111 01134668999999985 55777 668999999999999999764211
Q ss_pred CCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 360 NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 360 ~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
.+. ....|..||++|++||..
T Consensus 386 ---~~~-------------~~~~v~~v~~~G~~v~~~ 406 (410)
T PRK06846 386 ---AVA-------------RQSPRTAVFHKGQLVAGS 406 (410)
T ss_pred ---HHH-------------hcCCceEEEECCEEEeee
Confidence 110 123689999999999975
|
|
| >PRK08418 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-21 Score=184.82 Aligned_cols=231 Identities=16% Similarity=0.053 Sum_probs=125.0
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCcccc-cc-ccCCCCHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSY-ST-YLKTRPPSWEEAA 172 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~~~~p~~~e~~~ 172 (411)
.++..+.+.. ...++++.++++.+.|+++|+++.+|+.+... .+......|. -..+ .. +....|
T Consensus 174 ~~~~~~aph~---~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~---~~~~~~~~~~~~~~------- 240 (408)
T PRK08418 174 KFIPAIAIHS---PYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGW---FKKFFEKFLKEPKP------- 240 (408)
T ss_pred ceeEEEeCCC---CCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCc---hhhhhhhhcccccc-------
Confidence 3555555432 23578999999999999999999999877543 2212111110 0000 00 000000
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChh
Q 015182 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
..+.++.....+ +.+..+.|+... +.+.++.+++.|. .+..||..-.. .+. -.+|
T Consensus 241 ~~~pv~~l~~~g------~~~~~~~H~~~~--~~~di~~la~~g~--~v~~cP~sn~~-------lg~---g~~p----- 295 (408)
T PRK08418 241 LYTPKEFLELFK------GLRTLFTHCVYA--SEEELEKIKSKNA--SITHCPFSNRL-------LSN---KALD----- 295 (408)
T ss_pred cCCHHHHHHHhC------CCCeEEEecccC--CHHHHHHHHHcCC--cEEECHhHHHH-------hcC---CCcc-----
Confidence 001122222220 345667787754 2233444445565 44567853211 011 0122
Q ss_pred hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
+.++++.|+.+++|||..+.+... +.| .+.++............+++++++++|.|+|+++|
T Consensus 296 ----~~~~~~~Gi~v~lGtD~~~~~~~~-----~~~---------~em~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg 357 (408)
T PRK08418 296 ----LEKAKKAGINYSIATDGLSSNISL-----SLL---------DELRAALLTHANMPLLELAKILLLSATRYGAKALG 357 (408)
T ss_pred ----HHHHHhCCCeEEEeCCCCCCCCCc-----CHH---------HHHHHHHHHhccCCccccHHHHHHHHHHHHHHHhC
Confidence 335577899999999964332110 011 11121111110001113478999999999999999
Q ss_pred CCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 333 QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 333 ~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
++ .|+|++||.|||+++|.+.+. .+.. +.|+.-......|..||++|++|
T Consensus 358 ~~-~G~l~~G~~ADlv~~d~~~~~-~~~~---------~~~~~~~~~~~~v~~v~v~G~~v 407 (408)
T PRK08418 358 LN-NGEIKEGKDADLSVFELPEEC-TKKE---------QLPLQFILHAKEVKKLFIGGKEV 407 (408)
T ss_pred CC-CccccCCCccCEEEEeCCCCC-CChh---------HhHHHHHhccCccceEEECCEEc
Confidence 96 799999999999999986321 1111 22332111234799999999987
|
|
| >PRK10027 cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-20 Score=180.14 Aligned_cols=275 Identities=18% Similarity=0.141 Sum_probs=170.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEe----eec
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG----GLV 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (411)
+|||||+|+|+..+.. +++++ .+.++.+||||++++| ++.+.....+.++.+.+.+.. ..+++.+.. ..+
T Consensus 83 ~PGlIDaHvHiess~~-~p~~~---a~aal~~G~TtVv~dP-hei~nv~g~~gi~~~l~~a~~-~p~~~~~~~ps~vpa~ 156 (588)
T PRK10027 83 VPGFIDAHLHIESSMM-TPVTF---ETATLPRGLTTVICDP-HEIVNVMGEAGFAWFARCAEQ-ARQNQYLQVSSCVPAL 156 (588)
T ss_pred EECeEeccccCCcccC-CHhHH---HHHHHhCceEEEEcCC-CCcccCCCHHHHHHHHHHhhh-CCCeeEEeecccCcCC
Confidence 6999999999987653 44444 4468999999999999 777777777778777665443 334443322 111
Q ss_pred C--CCc---cchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccC
Q 015182 77 P--ENA---YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 150 (411)
Q Consensus 77 ~--~~~---~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~ 150 (411)
+ ++. -..++++++++ .++.++.-.|+|.+. ..-+++.+.++.. + .|+++.-|+..-+..
T Consensus 157 ~~~Et~Ga~~~~~~~~~~l~~~~v~glgEvMn~~~V---~~~d~~~~~ki~~-~--~~~~idGH~p~l~g~--------- 221 (588)
T PRK10027 157 EGCDVNGASFTLEQMLAWRDHPQVTGLAEMMDYPGV---ISGQNALLDKLDA-F--RHLTLDGHCPGLGGK--------- 221 (588)
T ss_pred cccccCCCcCCHHHHHHHhcCCCceeEEeccCcccc---ccCCHHHHHHHHH-h--CCCceECCCCCCChH---------
Confidence 1 111 12456777765 588899888887643 3346677777773 3 899999999864320
Q ss_pred cCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccc
Q 015182 151 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 230 (411)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~ 230 (411)
.+...+ +. |.. -+|-+.. ..+.+++. ++|..+..--
T Consensus 222 ---------------------~L~ay~--aa---------Gi~--sDHE~~t--~eea~ekl-r~Gm~v~iRe------- 257 (588)
T PRK10027 222 ---------------------ELNAYI--AA---------GIE--NCHESYQ--LEEGRRKL-QLGMSLMIRE------- 257 (588)
T ss_pred ---------------------HHHHHH--Hc---------CCC--CCcccCC--HHHHHHHH-HCCCEEEEeC-------
Confidence 111111 11 322 3465442 33444444 4676554310
Q ss_pred cccccCCCCcceEEcCCCCChhhHHHHHHHHhc--CCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH
Q 015182 231 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD--GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 308 (411)
Q Consensus 231 ~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~--G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~ 308 (411)
++.. .+.+.+...+.+ -...+++||........+ .| .+....+.
T Consensus 258 --------gS~~---------~nl~~l~~~~~~~~~~~~~l~TDd~~~~~l~~-----------~G------hi~~~vr~ 303 (588)
T PRK10027 258 --------GSAA---------RNLNALAPLINEFNSPQCMLCTDDRNPWEIAH-----------EG------HIDALIRR 303 (588)
T ss_pred --------Cccc---------cCHHHHHHHhhccCCCeEEEEcCCCChHHHHh-----------cc------CHHHHHHH
Confidence 1100 012233333322 134588999642211100 01 22233333
Q ss_pred HHh-cCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 309 GRK-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 309 ~~~-~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
..+ .|+++++|++++|.|||+++|++++|+|++|+.|||+++|... ..++..||
T Consensus 304 av~~~Gi~~~~Ai~mAT~nPA~~lgl~d~G~IapG~~ADlvvld~l~-------------------------~~~v~~v~ 358 (588)
T PRK10027 304 LIEQHNVPLHVAYRVASWSTARHFGLNHLGLLAPGKQADIVLLSDAR-------------------------KVTVQQVL 358 (588)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCCCCcccCCCCcCCEEEEccCC-------------------------CceEEEEE
Confidence 444 7999999999999999999999668999999999999998421 11478899
Q ss_pred ECCEEEEEcCccc
Q 015182 388 SRGNLVYKEGNHA 400 (411)
Q Consensus 388 ~~G~~v~~~g~~~ 400 (411)
++|++|+++ +..
T Consensus 359 ~~G~~v~~~-~~~ 370 (588)
T PRK10027 359 VKGEPIDAQ-TLQ 370 (588)
T ss_pred ECCEEeecc-ccc
Confidence 999999997 654
|
|
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=164.32 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
.++.++++++++.|+++|+++.+|+..... .+.... +.
T Consensus 159 ~~~~~~~~~iv~~A~~~gl~vasH~d~~~~-------------------------------~v~~a~----~~------- 196 (325)
T cd01306 159 AYAPANRSELAALARARGIPLASHDDDTPE-------------------------------HVAEAH----EL------- 196 (325)
T ss_pred hcCHHHHHHHHHHHHHCCCcEEEecCCChH-------------------------------HHHHHH----HC-------
Confidence 345788999999999999999999875321 112222 11
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
|... ++|..+ .+.++.++++|+.+... .| ++.. .+. ......++++++.|+.++++
T Consensus 197 Gv~~-~E~p~t----~e~a~~a~~~G~~vv~g-ap-n~lr-------g~s----------~~g~~~~~~ll~~Gv~~al~ 252 (325)
T cd01306 197 GVVI-SEFPTT----LEAAKAARELGLQTLMG-AP-NVVR-------GGS----------HSGNVSARELAAHGLLDILS 252 (325)
T ss_pred CCee-ccCCCC----HHHHHHHHHCCCEEEec-Cc-cccc-------Ccc----------ccccHhHHHHHHCCCeEEEE
Confidence 4333 345433 45666777788766542 12 1110 000 01123456778889999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEE
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVW 350 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~ 350 (411)
||+.|.. .+...+.+....+++++++++++|.|||+++|++++|+|++|+.||||+|
T Consensus 253 SD~~p~s-----------------------ll~~~~~la~~~gl~l~eAl~~aT~nPA~~lGl~d~G~I~~G~~ADlvvv 309 (325)
T cd01306 253 SDYVPAS-----------------------LLHAAFRLADLGGWSLPEAVALVSANPARAVGLTDRGSIAPGKRADLILV 309 (325)
T ss_pred cCCCcHh-----------------------HHHHHHHHHHHcCCCHHHHHHHHhHHHHHHcCCCCCCCcCCCCCCCEEEE
Confidence 9986432 11223444556789999999999999999999966899999999999999
Q ss_pred cCC
Q 015182 351 EPE 353 (411)
Q Consensus 351 d~~ 353 (411)
|.+
T Consensus 310 d~~ 312 (325)
T cd01306 310 DDM 312 (325)
T ss_pred eCC
Confidence 965
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >COG3964 Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=157.97 Aligned_cols=302 Identities=20% Similarity=0.247 Sum_probs=179.1
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHH-hc--CCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EK--RIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~ 77 (411)
.||+||.|+|+...+.+... +..+.+...||||++|.+ .. ...++..|.+..... .. +.++++++.+ ++.
T Consensus 56 spG~iDlHvHvy~ggt~~~v---~pd~~ga~~GvTTvVDAG-Sa--Gaanf~gF~r~vie~Sr~RI~Aflnvs~~G-l~a 128 (386)
T COG3964 56 SPGLIDLHVHVYYGGTEGGV---RPDMYGAPNGVTTVVDAG-SA--GAANFDGFYRTVIEASRVRIKAFLNVSPPG-LTA 128 (386)
T ss_pred ccCeeeeeeEEecCCCccCc---CHHHccccCCceEEEecC-Cc--CccchhhHHHHhhcchhheeeeeeeccCcc-eee
Confidence 49999999999866554332 345678899999999998 32 335566666543222 11 2344444332 221
Q ss_pred CC----c--cchHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhc
Q 015182 78 EN----A--YNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLE 148 (411)
Q Consensus 78 ~~----~--~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~ 148 (411)
.+ . -+.+++.+..+ .-+.|+|+-++......+ -+ .-++...+.|+..++|+++|..++..-
T Consensus 129 ~nE~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~-Gi--tPl~la~~ia~~~klPlmvHigePp~~------- 198 (386)
T COG3964 129 SNELYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEY-GI--TPLTLALRIANDLKLPLMVHIGEPPVL------- 198 (386)
T ss_pred ehhhCChhhCCHHHHHHHHHhCcCcEEEEEEEeeecccccc-CC--chHHHHHHHHhhcCCceEEecCCCCcc-------
Confidence 11 1 12345555544 346789987765432222 22 346777888899999999998876431
Q ss_pred cCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--------H-HHHHHHHHHhHCCCCE
Q 015182 149 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--------S-SSLDLLMEAKTNGDSI 219 (411)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--------~-~~~~~i~~~~~~g~~i 219 (411)
..++++....- + .+.||.+. + .-...+++++++|+.+
T Consensus 199 ------------------------~dEvlerL~~G-------D---IitHcfngkpn~~l~~dg~vr~~vrra~erGV~f 244 (386)
T COG3964 199 ------------------------MDEVLERLRRG-------D---IITHCFNGKPNTILTDDGVVRAEVRRARERGVIF 244 (386)
T ss_pred ------------------------HHHHHHhccCC-------c---eeeeeccCCCCCccccchhHHHHHHHHHhcceEE
Confidence 22334433321 2 24454421 0 1334677778888644
Q ss_pred EEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchh
Q 015182 220 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298 (411)
Q Consensus 220 ~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~ 298 (411)
-+-..-.+ .+.+..++++.+|. ++.|+||-..++. +.+-
T Consensus 245 D~ghG~as------------------------fsf~vAr~aia~GllP~~ISSDlh~~~~----------------~n~P 284 (386)
T COG3964 245 DAGHGRAS------------------------FSFNVARRAIANGLLPDIISSDLHTITK----------------LNGP 284 (386)
T ss_pred EccCCcce------------------------eeHHHHHHHHhcCCCcceeeccceeeee----------------cCch
Confidence 33211111 12345566788887 6799999533321 0111
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCce
Q 015182 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 378 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~ 378 (411)
.+.+...++++..-||++.++++++|.|||..++++++|+|+||..|||+||+.......-.+ .. ...+.+.+
T Consensus 285 v~dla~~mSKllalgmpl~~Vi~avT~npA~~i~l~~~gtLa~G~~aD~tvf~lk~~~~e~vD--a~-----gdsl~a~~ 357 (386)
T COG3964 285 VYDLAWIMSKLLALGMPLTDVINAVTHNPAVLIGLAEIGTLAPGAFADITVFKLKNRHVEFVD--AH-----GDSLTATH 357 (386)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhcCHHHHhCccccCccCCCcccceEEEEeccCceEEEe--cc-----Cchhehhe
Confidence 223444455556779999999999999999999998899999999999999997753221111 00 11222111
Q ss_pred EEeEEEEEEECCEEEEEcCcccC
Q 015182 379 LSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 379 ~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+- .+.+++++|+...+.+++..
T Consensus 358 ll-vp~~ai~a~~~~~r~~~~~a 379 (386)
T COG3964 358 LL-VPQMAIKAGEYLFRQIDFGA 379 (386)
T ss_pred ec-CCHHHhhhcchhhhhhhhcc
Confidence 11 24677888887777665543
|
|
| >COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-19 Score=169.13 Aligned_cols=276 Identities=24% Similarity=0.295 Sum_probs=176.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEee----ec
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG----LV 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 76 (411)
.|||||.|+|+..... + ..+-.++.+..||||++--| ..-....-.+.++.+.+.++. ..+++.++.. .+
T Consensus 76 vPGfID~H~HIESSm~-t---P~~FA~~Vlp~GtTtvV~DP-HEIaNV~G~~Gi~~ml~~a~~-~pl~~~~~~pScVPat 149 (584)
T COG1001 76 VPGFIDAHLHIESSML-T---PSEFARAVLPHGTTTVVSDP-HEIANVLGEDGIRFMLDEAKE-TPLKVYVMLPSCVPAT 149 (584)
T ss_pred ccceeecceecccccc-C---HHHHHHHhhccCceEEeeCc-HHHHhhccHHHHHHHHHHHhh-CCeEEEEecccCccCC
Confidence 5999999999975322 2 23456788999999998765 211122234566666665553 5677765532 11
Q ss_pred C-CCc-c--chHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCc
Q 015182 77 P-ENA-Y--NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 151 (411)
Q Consensus 77 ~-~~~-~--~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 151 (411)
+ ++. . ..+.++++++ ..+.++.-.|++.+. ...++.+-..++.+++.|++|.-|+.+-+..+
T Consensus 150 ~~Et~Ga~l~a~~i~e~~~~p~Vigl~E~Mn~pgV----i~~D~~~l~kl~a~~~~~k~VdGHapgl~g~~--------- 216 (584)
T COG1001 150 PFETSGAELTAEDIKELLEHPEVIGLGEMMNFPGV----IEGDPDMLAKLEAARKAGKPVDGHAPGLSGKE--------- 216 (584)
T ss_pred ccccCCceecHHHHHHHhhCCCccchhhhcCCchh----ccCCHHHHHHHHHHHHcCCeecccCCCCChHH---------
Confidence 1 111 1 2456777775 578888888887643 23456677778899999999999998854211
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
+...+. + |.+ -.|-+.. ..|.+++. +.|..+..--
T Consensus 217 ---------------------Ln~Y~a-a----------Gi~--tDHE~~t--~EEa~~kl-r~Gm~i~iRe-------- 251 (584)
T COG1001 217 ---------------------LNAYIA-A----------GIS--TDHESTT--AEEALEKL-RLGMKIMIRE-------- 251 (584)
T ss_pred ---------------------HHHHHh-c----------CCC--cCcccCC--HHHHHHHH-hCCcEEEEEc--------
Confidence 111111 1 322 3464442 34555555 4576554310
Q ss_pred ccccCCCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH
Q 015182 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 309 (411)
Q Consensus 232 ~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 309 (411)
|+. ..+...+...+.+ | ...+++||........ . +..+..+.+..
T Consensus 252 -------GS~---------a~dl~~l~~~i~e~~~~~~~lcTDD~~p~dl~-----------~------eGhld~~vR~A 298 (584)
T COG1001 252 -------GSA---------AKDLAALLPAITELGSRRVMLCTDDRHPDDLL-----------E------EGHLDRLVRRA 298 (584)
T ss_pred -------Cch---------hhhHHHHHHHHhhcCCceEEEECCCCChhHhh-----------h------cCCHHHHHHHH
Confidence 110 1233455555544 4 3478899964221111 1 12345556667
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEEC
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISR 389 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~ 389 (411)
.++|+++.+|++|+|+|||+.+|+++.|.|+||..|||++++ ++. .-+|..|+++
T Consensus 299 i~~Gv~p~~a~qmAtiN~A~~~gl~~~G~iAPG~~ADlvi~~-----------DL~--------------~~~v~~V~~~ 353 (584)
T COG1001 299 IEEGVDPLDAYQMATINPAEHYGLDDLGLIAPGRRADLVILE-----------DLR--------------NFKVTSVLIK 353 (584)
T ss_pred HHcCCCHHHHHHHHhcCHHHHcCCcccccccCCccccEEEEc-----------ccc--------------cCceeEEEEC
Confidence 789999999999999999999999779999999999999998 221 1268999999
Q ss_pred CEEEEEcCc
Q 015182 390 GNLVYKEGN 398 (411)
Q Consensus 390 G~~v~~~g~ 398 (411)
|++|.++|.
T Consensus 354 G~~v~~~g~ 362 (584)
T COG1001 354 GRVVAEDGK 362 (584)
T ss_pred CEEEecCCc
Confidence 999999996
|
|
| >cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-21 Score=188.55 Aligned_cols=267 Identities=20% Similarity=0.156 Sum_probs=153.4
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCccchHHHHH--HH----HCCceEE
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA--LL----NAGVLGL 97 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~g~~~i 97 (411)
...+.+++.||||++|+.. ... ..++.++...+. ++..+++................... .. ...+.++
T Consensus 187 ~~~~~~~~~GiT~v~d~~~-~~~--~~~~~~~~l~~~--~~l~~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 261 (479)
T cd01300 187 AAARELASLGVTTVHDAGG-GAA--DDIEAYRRLAAA--GELTLRVRVALYVSPLAEDLLEELGARKNGAGDDRLRLGGV 261 (479)
T ss_pred HHHHHHHhCCCcEEEcCCC-Chh--hHHHHHHHHHHC--CCCeEEEEEEeccccchhhhhhHHhhhccCCCCCcEEEeeE
Confidence 3456778999999999862 111 113445544332 33344443321111111000011100 00 1246789
Q ss_pred EEeccCC----------------CCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccccc
Q 015182 98 KSFMCPS----------------GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 161 (411)
Q Consensus 98 k~~~~~~----------------~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (411)
|+|++.. +..|.+.+++++++++++.|+++|++|.+|+.++..+...+
T Consensus 262 Kl~~DG~~~~~ta~l~~pY~~~~~~~g~~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l---------------- 325 (479)
T cd01300 262 KLFADGSLGSRTAALSEPYLDSPGTGGLLLISPEELEELVRAADEAGLQVAIHAIGDRAVDTVL---------------- 325 (479)
T ss_pred EEEEcCCCCcccccccCCcCCCCCCCCCccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHH----------------
Confidence 9988742 11334678999999999999999999999999865543221
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC--CC
Q 015182 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD--GD 239 (411)
Q Consensus 162 ~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~--~~ 239 (411)
.+++.+ ..+. +..+.++.++|++.. +.+.++++++.|+ .+++||++++........ .+
T Consensus 326 ---------~~~~~~---~~~~----g~~~~r~~i~H~~~~--~~~~~~~l~~~gv--~~~~~P~~~~~~~~~~~~~~lg 385 (479)
T cd01300 326 ---------DALEAA---LKDN----PRADHRHRIEHAQLV--SPDDIPRFAKLGV--IASVQPNHLYSDGDAAEDRRLG 385 (479)
T ss_pred ---------HHHHHH---HHhc----CCCCCCceeeecccC--CHHHHHHHHHcCC--ceEeCcccccCchHHHHHhccc
Confidence 111111 1111 112578899999876 3467777878775 557889876554322111 11
Q ss_pred -cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHH
Q 015182 240 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 318 (411)
Q Consensus 240 -~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 318 (411)
.+....+ .+..+++.|+.+++|||+.+.+. ++|..++.++.......... ...++++|+++
T Consensus 386 ~~~~~~~~---------p~~~~~~~Gv~v~lGSD~~~~~~-------~p~~~~~~av~~~~~~~~~~--~~~~~~ls~~~ 447 (479)
T cd01300 386 EERAKRSY---------PFRSLLDAGVPVALGSDAPVAPP-------DPLLGIWAAVTRKTPGGGVL--GNPEERLSLEE 447 (479)
T ss_pred HHHHhcCc---------hHHHHHHCCCeeeccCCCCCCCC-------CHHHHHHHHheeeCCCCCCC--CCccccCCHHH
Confidence 1112222 34456788999999999743221 22221111111000000000 01345799999
Q ss_pred HHHHHhHhHHHHhCC-CCCCcccccCCccEEE
Q 015182 319 LASWWSERPAKLAGQ-VSKGAIAIGNHADLVV 349 (411)
Q Consensus 319 al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv 349 (411)
+++++|.|||+++|+ +++|+|++||.|||||
T Consensus 448 al~~~T~~~A~~lg~e~~~GsLe~Gk~ADlvv 479 (479)
T cd01300 448 ALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479 (479)
T ss_pred HHHHHHHHHHHHhccccccccccCCcccceeC
Confidence 999999999999999 6789999999999986
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. |
| >COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-19 Score=171.88 Aligned_cols=216 Identities=19% Similarity=0.172 Sum_probs=127.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 110 PMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 110 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
..++++.++.+.+.++++|+++.+|+.+... +....... ..+| .+.....++
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~-------------g~~~-----------~~~~~~~g~--- 245 (421)
T COG0402 193 YTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPY-------------GARP-----------VERLDLLGL--- 245 (421)
T ss_pred CCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhc-------------CCCH-----------HHHHHHcCC---
Confidence 3578999999999999999999999977543 22211101 1111 111111111
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID 267 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~ 267 (411)
.+.+..+.|+... ...+ ++..++.|+ .+..||.. +++ +.. ..| +.++++.|+.+
T Consensus 246 -l~~~~~~~H~~~~-~~~e-~~~l~~~g~--~v~~cP~sN~~L--------~sG--~~p----------~~~~~~~gv~v 300 (421)
T COG0402 246 -LGSHTLLAHCVHL-SEEE-LELLAESGA--SVVHCPRSNLKL--------GSG--IAP----------VRRLLERGVNV 300 (421)
T ss_pred -CCCCeEEEEeccC-CHHH-HHHHhhCCC--eEEECcchhccc--------cCC--CCC----------HHHHHHcCCCE
Confidence 1455666666654 2222 222335565 45578843 222 111 112 24557779999
Q ss_pred EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcC----CCHHHHHHHHhHhHHHHhCCCCCCcccccC
Q 015182 268 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG----VTLEQLASWWSERPAKLAGQVSKGAIAIGN 343 (411)
Q Consensus 268 ~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----l~~~~al~~~T~n~A~~lg~~~~G~I~~G~ 343 (411)
.+|||...+++... +| .+.....+++...... ... ++++++|.|+|++||+.+.|+|++|+
T Consensus 301 ~~gTD~~~~~~~~d-----~l---------~~~~~a~~l~~~~~~~~~~~~~~-~~l~~aT~~gA~alg~~~~G~le~G~ 365 (421)
T COG0402 301 ALGTDGAASNNVLD-----ML---------REMRTADLLQKLAGGLLAAQLPG-EALDMATLGGAKALGLDDIGSLEVGK 365 (421)
T ss_pred EEecCCccccChHH-----HH---------HHHHHHHHHHHhhcCCCcccchH-HHHHHHHhhHHHHcCCcccCCccccc
Confidence 99999876654221 12 1223333333222211 112 38999999999999997799999999
Q ss_pred CccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 344 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 344 ~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
.|||||+|.+.+...+.. . .+ ...|.. ....|..|+++|+.++.++++.
T Consensus 366 ~ADlvvld~~~~~~~~~~-~-~~----~~v~~~--~~~~v~~v~~~g~~v~~~~~~~ 414 (421)
T COG0402 366 KADLVVLDASAPHLAPLR-P-VS----RLVFAA--GGKDVDRVLVDGRLVMEDGRLL 414 (421)
T ss_pred ccCEEEEcCCCCcccccc-H-HH----HHHHhc--CCCceeEEEECCEEEEEcceeh
Confidence 999999999875333221 0 00 011111 1237999999999999998765
|
|
| >cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=165.44 Aligned_cols=178 Identities=26% Similarity=0.341 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015182 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 194 (411)
Q Consensus 115 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (411)
..+..++..++.. ++|.+|+..... +..+++++++. +.++
T Consensus 180 ~~l~~l~~~~~~~-~~v~vHa~~~~~--------------------------------i~~~l~~~~e~-------g~~~ 219 (359)
T cd01309 180 LKLEALLPVLKGE-IPVRIHAHRADD--------------------------------ILTAIRIAKEF-------GIKI 219 (359)
T ss_pred ccHHHHHHHHcCC-eeEEEEeCCHHH--------------------------------HHHHHHHHHHc-------CCCE
Confidence 3455666555533 999999987432 44556666665 6778
Q ss_pred EEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcC-CccEEcCCC
Q 015182 195 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDH 273 (411)
Q Consensus 195 ~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G-~~~~~~sD~ 273 (411)
.+.|+... .+.++++++.|+.+. ++|.+..... . .... .....+..+++.| +.++++||+
T Consensus 220 ~i~H~~~~---~~~~~~la~~gv~v~--~~P~~~~~~~--~----------~~~~--~~~~~~~~l~~aGGv~valgsD~ 280 (359)
T cd01309 220 TIEHGAEG---YKLADELAKHGIPVI--YGPTLTLPKK--V----------EEVN--DAIDTNAYLLKKGGVAFAISSDH 280 (359)
T ss_pred EEECchhH---HHHHHHHHHcCCCEE--ECcccccccc--H----------HHhh--cchhhHHHHHHcCCceEEEECCC
Confidence 89998753 445666667776543 5564321110 0 0000 0112333456677 999999997
Q ss_pred CCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcC
Q 015182 274 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEP 352 (411)
Q Consensus 274 ~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~ 352 (411)
|.... . .+..........+++++++++++|.|||+++|+ +++|+|++|+.|||||||.
T Consensus 281 -~~~~~-------------------~-~l~~~~~~a~~~gl~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~ 339 (359)
T cd01309 281 -PVLNI-------------------R-NLNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVWNG 339 (359)
T ss_pred -CCccc-------------------h-hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCcccCCCCCccCEEEECC
Confidence 32110 0 111112223467899999999999999999999 5679999999999999997
Q ss_pred CCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEE
Q 015182 353 EAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~ 394 (411)
++ +. . ..+|..||++|++||
T Consensus 340 dp-l~------------------~---~~~v~~v~i~G~~v~ 359 (359)
T cd01309 340 DP-LE------------------P---TSKPEQVYIDGRLVY 359 (359)
T ss_pred Cc-cc------------------c---cCcccEEEECCEEeC
Confidence 62 11 1 236899999999986
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=159.65 Aligned_cols=263 Identities=21% Similarity=0.261 Sum_probs=140.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC--ceEEEEEeeecC-
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLVP- 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~- 77 (411)
+|||||+|+|+..++....++.. ..++++|||++++++ .+.+ ...+.+.+..+....+. .+++... +..+
T Consensus 49 ~PG~ID~H~H~~~~~~~~~~~~~---~~a~~~GvTt~~~~~-~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-G~~~~ 121 (365)
T TIGR03583 49 SAGWIDDHTHCFPKSALYYDEPD---EIGVKTGVTTVVDAG-STGA--DDIDDFYRLAQQAKTNVFALLNISRI-GLVAQ 121 (365)
T ss_pred ecCEEEeeeccCCCcccccCCHh---HhhhcCceeEEEeCC-CCCC--CCHHHHHHHHHhhCCcEEEEeeehhc-cccCh
Confidence 69999999999866554444442 447899999999987 4333 45555555443322111 1222212 2211
Q ss_pred CC-----ccchHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhcc
Q 015182 78 EN-----AYNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 149 (411)
Q Consensus 78 ~~-----~~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 149 (411)
.. ...++++.++.+ .++.++|.+|+.....+. .+++.++.+.+..+ +.+++|.+|+......
T Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~~~t~~~i~E~-gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~-------- 191 (365)
T TIGR03583 122 DELADLSNLDASAVKQAVERYPDFIVGLKARMSKSVVGDN-GIEPLEIAKQIQQE-NLELPLMVHIGSAPPE-------- 191 (365)
T ss_pred hhhhChHHhHHHHHHHHHHhCcCcEEEEEEeecccccccC-CcCHHHHHHHHHHh-cCCCcEEEEeCCCccC--------
Confidence 11 112334444433 247788888874322221 22355555555444 7899999999875421
Q ss_pred CcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHH----------HHHHHHHhHCCCCE
Q 015182 150 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS----------LDLLMEAKTNGDSI 219 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~----------~~~i~~~~~~g~~i 219 (411)
+.++++... .| . .+.|+.+. .. .+.+....+.|+
T Consensus 192 -----------------------~~~i~~~~~--------~g-~-~~~H~fng-~~~~~~r~~g~~~~~~~~~l~~G~-- 235 (365)
T TIGR03583 192 -----------------------LDEILALME--------KG-D-VLTHCFNG-KPNGILRETGEVKPSVLEAYNRGV-- 235 (365)
T ss_pred -----------------------HHHHHHHhc--------CC-C-eeeeeecC-CCCCCCCCcchHHHHHHHHHhCeE--
Confidence 122222211 13 2 35676543 11 133444444453
Q ss_pred EEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-ccEEcCCCCCCChhhhhcccCCccccCCCCchh
Q 015182 220 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298 (411)
Q Consensus 220 ~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~ 298 (411)
.+++. |+. .+ . ..+........+. ..+.++|. +.. + ..++-
T Consensus 236 i~d~~-hg~----------------~~-~----~~~~~~~~~~~~~~~~td~~d~-~~~--------~-------~~~gp 277 (365)
T TIGR03583 236 ILDVG-HGT----------------AS-F----SFHVAEKAKRAGIFPDTISTDI-YIR--------N-------RINGP 277 (365)
T ss_pred EEEeC-CCC----------------CC-c----hHHHHHHHHhCCCCCccccccc-ccC--------C-------CccCc
Confidence 33322 000 00 0 0111112222332 23444553 110 0 11111
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCC
Q 015182 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 354 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~ 354 (411)
...+...++.+...|++++++++++|.|||++||+++.|+|++|+.|||+|||.+.
T Consensus 278 ~~~l~~~~~~~~~~g~~~~ea~~~~t~npa~~~gl~~~g~i~~g~~ad~~~~~~~~ 333 (365)
T TIGR03583 278 VYSLATVMSKFLALGYSLEEVIEKVTKNAAEILKLTQKGRLQEGYDADLTIFTVKA 333 (365)
T ss_pred cccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCCcCCCCcccEEEEecCC
Confidence 11233334444457899999999999999999999548999999999999999753
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. |
| >cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.5e-18 Score=161.25 Aligned_cols=126 Identities=18% Similarity=0.135 Sum_probs=79.5
Q ss_pred CCceeecccccCCCC-C--CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-CceEEEEEe--e
Q 015182 1 MPGLIDVHAHLDDPG-R--TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYVDVGFWG--G 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~-~--~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~ 74 (411)
+|||||+|+|...+. + ..++++...++.++++||||+++++ .+.+.....+.+..+.+..+.. ....++++. .
T Consensus 50 ~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~~~~~GvTtv~~t~-~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP 128 (374)
T cd00854 50 VPGFIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTTSFLPTT-VTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGP 128 (374)
T ss_pred cccEEEeeecccCCCCCCCCCHHHHHHHHHHHHccCcceeeccc-cCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecC
Confidence 699999999997532 2 2357788889999999999999998 5554333333444444433222 122222221 1
Q ss_pred ecCC------C-----ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHH--HHHHHHHHhCCCcEE-EecCC
Q 015182 75 LVPE------N-----AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI--KEGLSVLARYKRPLL-VHAEM 137 (411)
Q Consensus 75 ~~~~------~-----~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l--~~~~~~a~~~g~~v~-~H~~~ 137 (411)
.... . ....++++++.+.+.+.+|++. +.+|.. .++++.++++|++++ .|...
T Consensus 129 ~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~ik~~t----------laPE~~~~~~~i~~~~~~gi~v~~GH~~a 195 (374)
T cd00854 129 FISPEKKGAHPPEYLRAPDPEELKKWLEAAGGLIKLVT----------LAPELDGALELIRYLVERGIIVSIGHSDA 195 (374)
T ss_pred ccCcccCCCCCHHHcCCcCHHHHHHHHHhcCCCEEEEE----------ECCCCCChHHHHHHHHHCCeEEEeeCCcC
Confidence 1100 0 0123567777776677899863 234444 788999999999995 89764
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. |
| >KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=157.61 Aligned_cols=215 Identities=18% Similarity=0.180 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCc-ccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
.++.+.+...-+.|+.+.+++..|..+. ..++..... +. +...+..+++..... ++
T Consensus 216 ~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~f-------------f~------~~~~y~~~yd~~~lL---~~- 272 (439)
T KOG3968|consen 216 SCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNF-------------FP------EKLSYTDVYDKGGLL---TE- 272 (439)
T ss_pred CCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHh-------------hh------hcccchHHHHHhccc---ch-
Confidence 4667778888888888999999998664 333311110 00 001112222222111 10
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.-.-.|.+|++.. .++++ +++|..+ ..||..-+.- ..-.|+ ++++|+.|+++.+
T Consensus 273 ktvlaH~~hl~d~--ei~~l---~k~g~sv--shCP~Sn~~L----------~sG~~~---------vr~lL~~~v~VgL 326 (439)
T KOG3968|consen 273 KTVLAHLEHLSDE--EIELL---AKRGCSV--SHCPTSNSIL----------GSGIPR---------VRELLDIGVIVGL 326 (439)
T ss_pred HhHhhhheecCch--hHHHH---HhcCCce--EECCcchhhh----------ccCCcc---------HHHHHhcCceEee
Confidence 0223566776653 44444 3456544 4677532110 001232 3456888999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccE
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADL 347 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADl 347 (411)
|||.++.+.-... .....+...+.... ..++|++++|.++|.|+|++||+ +..|++++||.+|+
T Consensus 327 GtDv~~~s~l~a~--------------r~A~~~s~hL~~~~~~~~Ls~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDa 392 (439)
T KOG3968|consen 327 GTDVSGCSILNAL--------------RQAMPMSMHLACVLDVMKLSMEEALYLATIGGAKALGRDDTHGSLEVGKYFDA 392 (439)
T ss_pred cCCccccccHHHH--------------HHHHHHHHHHHhccCcccCCHHHHHHHHhccchhhccCCCcccceecccccce
Confidence 9998764321100 00111111111111 25799999999999999999999 66999999999999
Q ss_pred EEEcCCCeeE----eC-CCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 348 VVWEPEAEFE----LD-NDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 348 vv~d~~~~~~----~~-~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
+++|.+.+.. .+ .+ ++.+ .-.|.|. ..++..|||+|+.|++
T Consensus 393 i~id~s~~~~~l~~~~~~~-~lI~----~~v~~g~--drni~~V~V~Gk~v~~ 438 (439)
T KOG3968|consen 393 IIIDLSAPESPLYRFSGHH-DLIS----KVVYNGD--DRNIAEVFVAGKLVKQ 438 (439)
T ss_pred EEEeCCCCcchhhhccchH-HHHH----HHHhcCC--CCceEEEEEccEEecc
Confidence 9999886410 00 00 1111 1122221 1279999999999875
|
|
| >PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=154.11 Aligned_cols=288 Identities=26% Similarity=0.292 Sum_probs=150.9
Q ss_pred CCceeecccc--cCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec
Q 015182 1 MPGLIDVHAH--LDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV 76 (411)
Q Consensus 1 lPGlID~H~H--~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (411)
+|||||+|+| +... +....+......+.++.+|||++++++ +. ....+...... ...........
T Consensus 8 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~-~~-----~~~~~~~~~~~-----~~~~~~~~~~~ 76 (304)
T PF13147_consen 8 LPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMP-GT-----NPEELNRARRR-----GAGYPGSGAGP 76 (304)
T ss_dssp EE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESS-SS-----SHHHHHHHHHH-----ESEEEEECESC
T ss_pred ccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCC-CC-----CchhhHHHHhh-----ccccccccccc
Confidence 6999999999 3222 223344455677889999999999976 22 12222222111 11112211111
Q ss_pred C-CCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCC-CcEEEecCCcccchhhhhhccCcCCc
Q 015182 77 P-ENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-RPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 77 ~-~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ........+........ .++...+. ......+....+.+.+.| +.+..|+... ......... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~ 142 (304)
T PF13147_consen 77 RGTTIEELEALVDLIAAEG--VGFVAAYN------GIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAIAEG-----L 142 (304)
T ss_dssp CHHHHHHHHHHHHHHHHTE--EEEESSST------HHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHHHHH-----H
T ss_pred cccchHHHHHHHHHHhhcC--cceeeccc------cCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHHHhc-----c
Confidence 0 00112223333333333 33322110 235677888888899999 5555555543 111111000 0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
.... .. ..+...+...+..... ... +..+++...... .....+......++...... .+......
T Consensus 143 ~~~~-~~-~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 207 (304)
T PF13147_consen 143 DAME-HI-LPHEVAEALHLAEALA--QGA-------GPGLHCHVASDD-ATAEGVAIAHGFGLPPTPLH---LLARDAAA 207 (304)
T ss_dssp HTTH-HS-THHHHHHHHHHHHHHH--HHH-------THCEEEEETSSH-HHHHHHHHHHHTTHEEEEEE---HHHHHHHH
T ss_pred cchh-hh-hhhhHHHHHHHHHHhh--hcc-------ccchhhhhhhhh-hhhHHHHHHHhhccccchHH---hhHHHHHh
Confidence 0000 00 0111222222222222 211 344444444443 22222333444454333322 11110000
Q ss_pred cCCCCcceEEcCCCC--ChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc
Q 015182 235 IPDGDTRFKCAPPIR--DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 312 (411)
Q Consensus 235 ~~~~~~~~~~~p~lr--~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 312 (411)
.+......||++ .......+++++++|+.++++||+.+.... +....+..........
T Consensus 208 ---~~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~-----------------~~~~~~~~~~~~~~~~ 267 (304)
T PF13147_consen 208 ---AGIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSSTE-----------------GSGDLLHEAMRLAVRA 267 (304)
T ss_dssp ---HGGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTTTT-----------------CTTTHHHHHHHHHHHT
T ss_pred ---cCceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccccc-----------------cccccchhhhhHHhhc
Confidence 134567888877 777888999999999999999998765320 0112334444455668
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLV 348 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlv 348 (411)
|++++++++++|.|||++||+ .++|+|++||+||||
T Consensus 268 gl~~~~al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 268 GLSPEEALRAATSNPARILGLDDDKGSIAPGKDADLV 304 (304)
T ss_dssp SSTHHHHHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence 999999999999999999999 889999999999997
|
... |
| >COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-16 Score=141.66 Aligned_cols=91 Identities=23% Similarity=0.307 Sum_probs=72.8
Q ss_pred CCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEE---eEEEEEEECC
Q 015182 314 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRG 390 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~---~~v~~ti~~G 390 (411)
++++.+++..|..+|..+|+.++|.|++|+.|||+|+|+.....+.. +. .. .-|+.|.... -.|..|+|.|
T Consensus 474 l~Le~av~rmT~~~Ae~~GL~drGlvreG~rADl~viDp~~vr~~a~----y~-~~-~lPa~G~~~~~vn~~~vat~v~G 547 (579)
T COG3653 474 LSLERAVRRMTGELAEWFGLGDRGLVREGDRADLVVIDPHLVRDVAT----YT-EP-ALPAYGILRVMVNRNVVATGVGG 547 (579)
T ss_pred ccHHHHHHHHhccHHHHhCcccccccccccccceEEEcccccccccc----cc-Cc-cCCCCcceEEEEeccceeeecce
Confidence 99999999999999999999779999999999999999864322211 11 11 4688876543 2367888889
Q ss_pred EEEEEcCcccCC-CCCccccC
Q 015182 391 NLVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 391 ~~v~~~g~~~~~-~~g~~~~~ 410 (411)
.++|++|+++++ .+|+++|.
T Consensus 548 vvs~rdGe~tg~~~aGR~lR~ 568 (579)
T COG3653 548 VVSFRDGEFTGQVKAGRYLRA 568 (579)
T ss_pred eEEEecCcccCcccccchhcc
Confidence 999999999985 88988874
|
|
| >COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-15 Score=132.03 Aligned_cols=285 Identities=20% Similarity=0.238 Sum_probs=184.7
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc--CCceEEEEEe--eecC
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK--RIYVDVGFWG--GLVP 77 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~ 77 (411)
..-.|+|+|+++..+ ..+.--..+.++...+-|| |..|++.+.+...+++++... ...-++.+.. .+++
T Consensus 8 ~rPdDwHlHLRdg~m------L~~V~p~ts~~f~rAiIMP-NL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlYLtd 80 (344)
T COG0418 8 RRPDDWHLHLRDGAM------LKAVVPYTSRGFGRAIIMP-NLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLYLTD 80 (344)
T ss_pred cCccceeEEecCccH------HHHhhhhhhhhcceEEEcC-CCCCCcccHHHHHHHHHHHHHhCcCCCCCceeEEEEecC
Confidence 345799999997532 2233334455888888999 888887776654444433211 1111222211 1233
Q ss_pred CCccchHHHHHHHHCC-ceEEEEeccCCCCCC-CCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcc
Q 015182 78 ENAYNASALEALLNAG-VLGLKSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 155 (411)
Q Consensus 78 ~~~~~~~~~~~~~~~g-~~~ik~~~~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 155 (411)
.. ..+++.+..+.| +.++|+|....+.+. ....+-+.+..+++...+.|+++.+|-+-........
T Consensus 81 ~~--~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDif---------- 148 (344)
T COG0418 81 ST--TPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIF---------- 148 (344)
T ss_pred CC--CHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccch----------
Confidence 21 234677777776 789999986643221 1234568888999999999999999988754311111
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccccc
Q 015182 156 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235 (411)
Q Consensus 156 ~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~ 235 (411)
..|..-+..+++-..+. .+..++.++|+++. +..+.++.. +.++.+++.||||+++..++
T Consensus 149 -----------drE~~Fi~~vl~pl~~~-----fP~LKIV~EHiTT~-dav~~v~~~---~~nlaATIT~hHL~~nrnd~ 208 (344)
T COG0418 149 -----------DREAAFIESVLEPLRQR-----FPKLKIVLEHITTK-DAVEYVKDA---NNNLAATITPHHLLLNRNDM 208 (344)
T ss_pred -----------hhHHHHHHHHHHHHHhh-----CCcceEEEEEeccH-HHHHHHHhc---CcceeeEeehhheeeehhhh
Confidence 11222344455533322 34789999999998 777777755 45688999999999988776
Q ss_pred CCCC--cceEEcCCCCChhhHHHHHHHHhcCCc-cEEcCCCCCCChhhhhcccCCccccCCCCchhhh---HHHHHHHHH
Q 015182 236 PDGD--TRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF---VLPVTWSYG 309 (411)
Q Consensus 236 ~~~~--~~~~~~p~lr~~~~~~~l~~~l~~G~~-~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~---~~~~~~~~~ 309 (411)
--.| +...|.|-++...++.+|+++..+|-. ..+|||.+||....|. ...|+.|.-. .++.+.+ +
T Consensus 209 l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke--------~~cgcAG~fsap~al~~~Ae-v 279 (344)
T COG0418 209 LVGGIRPHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKE--------SACGCAGIFSAPFALPLYAE-V 279 (344)
T ss_pred hcCCCCcceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCcccccc--------cccccccccccHhHHHHHHH-H
Confidence 5434 667788999999999999999888764 6889999999865553 2335555432 3333222 2
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCCC
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~~ 334 (411)
.++-=.++..-..+|.|+.++.|++
T Consensus 280 FE~~naL~~LeaF~S~nGp~fY~lp 304 (344)
T COG0418 280 FEEENALDNLEAFASDNGPKFYGLP 304 (344)
T ss_pred HHHhcHHHHHHHHHhhcCcceeccc
Confidence 2333346666667899999999994
|
|
| >PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-18 Score=161.12 Aligned_cols=40 Identities=38% Similarity=0.532 Sum_probs=35.9
Q ss_pred cCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEc
Q 015182 312 YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWE 351 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d 351 (411)
.+++++++++++|.|||++||+ +++|+|++||+|||||||
T Consensus 293 ~~~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 293 LGISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp HHSHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred ccccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 3499999999999999999999 889999999999999997
|
The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: |
| >PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-16 Score=148.11 Aligned_cols=60 Identities=27% Similarity=0.348 Sum_probs=52.4
Q ss_pred HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 309 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 309 ~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
+...+++++++++++|.|||+++|+ +++|+|++|+.|||+|||.+ .+|..||
T Consensus 321 ~~~~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvvld~~---------------------------~~v~~v~ 373 (382)
T PRK11170 321 VEHVGIALDEALRMATLYPARAIGVDKRLGSIEAGKVANLTAFTRD---------------------------FKITKTI 373 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEECCC---------------------------CcEEEEE
Confidence 3457899999999999999999999 45799999999999999944 1478999
Q ss_pred ECCEEEEE
Q 015182 388 SRGNLVYK 395 (411)
Q Consensus 388 ~~G~~v~~ 395 (411)
++|+.++.
T Consensus 374 ~~G~~~~~ 381 (382)
T PRK11170 374 VNGNEVVT 381 (382)
T ss_pred ECCEEeec
Confidence 99999874
|
|
| >TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-16 Score=148.32 Aligned_cols=42 Identities=31% Similarity=0.521 Sum_probs=38.7
Q ss_pred cCCCHHHHHHHHhHhHHHHhCCC-CCCcccccCCccEEEEcCC
Q 015182 312 YGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPE 353 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~~-~~G~I~~G~~ADlvv~d~~ 353 (411)
.+++++++++++|.|||+++|++ ++|+|++|+.|||+|||.+
T Consensus 327 ~~~~~~eal~~aT~npA~~lgl~~~~G~i~~G~~ADlvv~d~~ 369 (380)
T TIGR00221 327 TNISLTDAARMSSLNPARALGIDDRLGSVTVGKDANLVVFTPD 369 (380)
T ss_pred hCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCcCCEEEECCC
Confidence 46999999999999999999994 4799999999999999955
|
|
| >COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-16 Score=135.11 Aligned_cols=92 Identities=26% Similarity=0.302 Sum_probs=69.4
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-CCCHHHHHHHHhHhHHHHhCCC
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~~al~~~T~n~A~~lg~~ 334 (411)
...+..+.|+.++++||+.|.+. +...+.+..+. .+++.||++++|.|||+++|+.
T Consensus 285 sA~ela~~glLDiLsSDY~P~SL-----------------------l~A~F~La~~~~~~~lpqAvalvt~nPA~algl~ 341 (377)
T COG3454 285 SARELAQHGLLDILSSDYVPASL-----------------------LHAAFRLADLGSNISLPQAVALVTKNPARALGLT 341 (377)
T ss_pred hHHHHHhCCceeeecccCCcHHH-----------------------HHHHHHHhhhhcccCHHHHHHHhccCHHHhcCCC
Confidence 44556677999999999876543 22222222222 3589999999999999999998
Q ss_pred CCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEE
Q 015182 335 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 335 ~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~ 394 (411)
++|+|+||++||||.+..+. ..| .|..||+.||-|+
T Consensus 342 DRG~Ia~GlrADlv~v~~~~----------------~vp--------~ir~vwr~G~rv~ 377 (377)
T COG3454 342 DRGRIAPGLRADLVRVRRDG----------------GVP--------VIRTVWRAGKRVA 377 (377)
T ss_pred cccccccccccceEEEecCC----------------CCc--------eeeeeeecceecC
Confidence 89999999999999876442 122 4889999999774
|
|
| >COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=139.62 Aligned_cols=61 Identities=33% Similarity=0.347 Sum_probs=53.2
Q ss_pred HHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEE
Q 015182 308 YGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 386 (411)
Q Consensus 308 ~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t 386 (411)
.....+.+++||++|+|.|||+.+|+ +++|+|++||+||||+||.| -+|..|
T Consensus 319 ~v~~~~~~~~eAv~maS~~PA~~lgl~~~~G~i~~G~~Adlvvld~d---------------------------~~v~~T 371 (380)
T COG1820 319 LVEWGGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDD---------------------------LNVKAT 371 (380)
T ss_pred HHHHhCCCHHHHHHHhhhhHHHHhCCcCcccccCCCcccCEEEECCC---------------------------CcEEEE
Confidence 34445799999999999999999999 67899999999999999955 158999
Q ss_pred EECCEEEEE
Q 015182 387 ISRGNLVYK 395 (411)
Q Consensus 387 i~~G~~v~~ 395 (411)
|++|+++|.
T Consensus 372 ~i~G~~~~~ 380 (380)
T COG1820 372 WINGEKVFN 380 (380)
T ss_pred EECCEEeeC
Confidence 999999873
|
|
| >COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=139.85 Aligned_cols=286 Identities=25% Similarity=0.364 Sum_probs=173.7
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCC--------CHHHHHHHHHHHhcCCceEEEEEe
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--------STETLKLKVDAAEKRIYVDVGFWG 73 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (411)
-|-||+|+|+-.| .....|+++||||+..-+ +.|... ..-.+.++.+.++ ...+++++.+
T Consensus 129 AGGiDtHiHfI~P---------qqi~~Al~sGiTtmiGGG--tGpa~Gt~aTT~TpG~w~i~rMl~a~d-~~p~N~g~lg 196 (568)
T COG0804 129 AGGIDTHIHFICP---------QQIEEALASGITTMIGGG--TGPADGTNATTCTPGPWHIARMLQAAD-GLPMNIGFLG 196 (568)
T ss_pred eccccceeEEecH---------HHHHHHHhcCcEEEecCc--cCCCCCcccccccCCHHHHHHHHHhhh-cCceeeEEee
Confidence 4789999999765 246789999999998654 222111 1124555555444 4678998875
Q ss_pred eecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCC
Q 015182 74 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 153 (411)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~ 153 (411)
- .+......+.++++.|+.++|+.-+ +-.++..++.++..|.+++++|++|...-....
T Consensus 197 K---Gn~s~~~~L~Eqi~aGa~GlKlHED-------WG~TpaaI~~~L~VAD~~DvqVaiHtDTLNEsG----------- 255 (568)
T COG0804 197 K---GNASNPAPLAEQIEAGAIGLKLHED-------WGATPAAIDTCLSVADEYDVQVAIHTDTLNESG----------- 255 (568)
T ss_pred c---CCCCCchhHHHHHhhccceeEeecc-------cCCCHHHHHHHHhhhhhhceEEEEeeccccccc-----------
Confidence 2 2333445688889999999999643 346789999999999999999999987633211
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
-++..+...+ |.-+|..|...+ -..-++|+.+...++ +-++++|.--|.-
T Consensus 256 ------------------fvEdTi~A~~---------gRtIHtyHtEGAGGGHAPDiikv~~~~Nv-LPsSTNPT~Pytv 307 (568)
T COG0804 256 ------------------FVEDTIAAIK---------GRTIHTYHTEGAGGGHAPDIIKVAGQPNV-LPSSTNPTRPYTV 307 (568)
T ss_pred ------------------chHhHHHHhc---------CceeEEeeccCCCCCCccHHHHHccCCCc-CcCCCCCCCCccc
Confidence 1333343333 667888886532 035578887755443 2234455322110
Q ss_pred ccccCC-CCc---ceEEcCC-----------CCCh--hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCC
Q 015182 232 AEEIPD-GDT---RFKCAPP-----------IRDA--ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 294 (411)
Q Consensus 232 ~~~~~~-~~~---~~~~~p~-----------lr~~--~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g 294 (411)
..+.+ +.- .....|. +|.. ...+-|.++ |....++||......
T Consensus 308 -NT~~EhlDMlMVcHhL~p~ipeDvaFAeSRIR~eTIAAEdiLhDm---GafSmisSDSQAMGR---------------- 367 (568)
T COG0804 308 -NTIDEHLDMLMVCHHLDPRIPEDVAFAESRIRPETIAAEDILHDM---GAFSMISSDSQAMGR---------------- 367 (568)
T ss_pred -ccHHHhhhhhhhhccCCCCCcchhhhhhhccchhhhhHHHHHhhc---cceEEeccchHhhhc----------------
Confidence 00000 000 0001111 2211 111222222 888899999643211
Q ss_pred CchhhhHHHHHHHH---HH-hc-----------CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEe
Q 015182 295 ISSLQFVLPVTWSY---GR-KY-----------GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFEL 358 (411)
Q Consensus 295 ~~~~~~~~~~~~~~---~~-~~-----------~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~ 358 (411)
.| | .....|+. +. +. .+...+-+..+|+|||-.-|+ +.+||+++||.||||+|++.
T Consensus 368 -vG-E-vi~RtwQtA~kmK~qrG~L~~d~~~nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~Pa----- 439 (568)
T COG0804 368 -VG-E-VITRTWQTADKMKKQRGALPEDAGGNDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPA----- 439 (568)
T ss_pred -cc-h-hhhhHHHHHHHHHHhcCCCCCCCCCCccHHHhhhhhheecCHHHhcccchhccceeccceeeeeeechh-----
Confidence 00 1 11112221 11 11 145778899999999999999 88999999999999999964
Q ss_pred CCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 359 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 359 ~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
. +-.++.+|+.+|-+.+.
T Consensus 440 ----F---------------FGvKP~~vlkgG~ia~a 457 (568)
T COG0804 440 ----F---------------FGVKPELVLKGGMIAWA 457 (568)
T ss_pred ----h---------------cCCCcceEEecceeeee
Confidence 1 12468889999988885
|
|
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=147.27 Aligned_cols=248 Identities=22% Similarity=0.235 Sum_probs=134.3
Q ss_pred HHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHh-cCCceEEEEEe---e---ecCCCccchHHHHHHH----HCCc
Q 015182 26 TKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-KRIYVDVGFWG---G---LVPENAYNASALEALL----NAGV 94 (411)
Q Consensus 26 ~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~----~~g~ 94 (411)
...+.+.||||+.|+. . ......+.+..+.+..+ ++..+++..+. + +.+........+.+.. ..|.
T Consensus 136 ~~~~~a~GiTt~~d~~-~--~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~ 212 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYG-G--GFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGA 212 (404)
T ss_dssp HHHHCHTCEEEETTCE-C--CCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCCeEEecCCc-c--ccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCcccc
Confidence 4456789999999987 2 11234455666555544 33445554432 1 1222222222222221 1232
Q ss_pred eEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHH
Q 015182 95 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174 (411)
Q Consensus 95 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~ 174 (411)
. .. . .+.+..+++++.++++.|++.|+++.+|+.++..+.
T Consensus 213 ~-~~--~-----~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~-------------------------------- 252 (404)
T PF07969_consen 213 P-VH--I-----SGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAID-------------------------------- 252 (404)
T ss_dssp E-EE--E-----TC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHH--------------------------------
T ss_pred c-cc--c-----cccccccchhHHHHHHHHHhcCCeeEEEEcCCchHH--------------------------------
Confidence 1 11 1 344567888899999999999999999998765432
Q ss_pred HHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccc-ccCC-CCcceEEcCCCCChh
Q 015182 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE-EIPD-GDTRFKCAPPIRDAA 252 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~-~~~~-~~~~~~~~p~lr~~~ 252 (411)
.+++...+. .....+.|+... ..+.++.+++.+ +.++++|++++.... .... .+. -+ ..
T Consensus 253 ~~l~a~~~~-------~~~~~i~h~~~~--~~~~~~~~~~l~--~~~~~~p~~~~~~~~~~~~~~~~~-------~~-~~ 313 (404)
T PF07969_consen 253 EALDAIEAA-------RARGRIEHAELI--DPDDIERMAELG--VTASVQPHFLFSWGGEWYEERLGP-------ER-AR 313 (404)
T ss_dssp HHHHHHHHH-------TCCHEEEEHCBC--CHHHHHHHHHHT--TEEEECCTHHHHETEETHHHHHHH-------HC-GG
T ss_pred hHHHHHHhh-------cccceeeccccC--CHHHHHHHHHhC--CccccChhHhhhccchhhhhhhhh-------HH-HH
Confidence 233333322 111157787754 334455555545 467788866654431 0000 000 00 01
Q ss_pred hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHH-HH------HHhcCCCHHHHHHHHhH
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SY------GRKYGVTLEQLASWWSE 325 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~-~~------~~~~~l~~~~al~~~T~ 325 (411)
....+...++.|+.++++||+ |... .+||. ++........ .. ..++.+|++|+|+++|.
T Consensus 314 ~~~~~~~~~~~Gv~v~~gsD~-p~~~------~~P~~-------~~~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~ 379 (404)
T PF07969_consen 314 RIYPIRSLLDAGVRVALGSDA-PVSP------PNPFR-------GIWAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTS 379 (404)
T ss_dssp GBTHHHHHHHCTTEEEE--TT-TTSS------CCHHH-------HHHHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTH
T ss_pred HHhHHHHHHhccCceecCcCC-cccc------cCcch-------hhhhhhccccccccccccccccccCCHHHHHHHHhH
Confidence 113456678889999999996 4321 12331 1111111100 00 01267999999999999
Q ss_pred hHHHHhCC-CCCCcccccCCccEEE
Q 015182 326 RPAKLAGQ-VSKGAIAIGNHADLVV 349 (411)
Q Consensus 326 n~A~~lg~-~~~G~I~~G~~ADlvv 349 (411)
|||+.+|+ +++|+|++||.|||||
T Consensus 380 ~~A~~~g~~~~~Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 380 NPARALGLEDRKGSLEPGKLADFVV 404 (404)
T ss_dssp HHHHHTT-TTTSSSSSTTSBS-EEE
T ss_pred HHHHHcCCCCCcceECCCCCcCeEC
Confidence 99999999 5569999999999997
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >PRK06886 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=133.06 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=134.0
Q ss_pred HHHHHHHcCCceeEecCCCCCCC--CCCCHHHHHHHHHHHhcCCceEEE-EEe-eecCCCccchHHHHHHHHCCceEEEE
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDP--STISTETLKLKVDAAEKRIYVDVG-FWG-GLVPENAYNASALEALLNAGVLGLKS 99 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~ik~ 99 (411)
+..+.+++.|+|.++.+. +..| ....++++.+.++..+....+.+. |.. ++. .++..+-+.+..+. ++.+.-
T Consensus 73 ~~l~~~~~~Gtt~iRtHv-dvd~~~~l~~~~a~~~~r~~~~~~idlq~vafPq~g~~--~~~~~~l~~~al~~-advvGG 148 (329)
T PRK06886 73 QAIELMISQGVTAFGTFV-DIDPICEDRAIIAAHKAREVYKHDIILKFANQTLKGVI--EPTAKKWFDIGSEM-VDMIGG 148 (329)
T ss_pred HHHHHHHHcCcccEeeee-ccCCCccccHHHHHHHHHHHhcCcceEEEEecChhhcc--CccHHHHHHHHHHh-CCEEeC
Confidence 456678899999999987 5445 445567777777666654433332 111 121 11222234443333 333222
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHH
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~ 179 (411)
. .+.+ ......+.+.++.+++.|+++|++|.+|+.+...... ..++.+.+.
T Consensus 149 i-P~~~-~~~~~~~~e~l~~~~~lA~~~g~~Id~Hlde~~~~~~---------------------------~~le~l~~~ 199 (329)
T PRK06886 149 L-PYRD-ELDYGRGLEAMDILLDTAKSLGKMVHVHVDQFNTPKE---------------------------KETEQLCDK 199 (329)
T ss_pred c-cCCc-CCCCCCCHHHHHHHHHHHHHcCCCeEEeECCCCchhH---------------------------HHHHHHHHH
Confidence 1 1110 0111356799999999999999999999987532110 112333333
Q ss_pred HhhhccCCCCCCceEEEEcCCChHH------HHHHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChh
Q 015182 180 AKDTRTDGPAEGAHLHIVHLSDASS------SLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~h~~~~~~------~~~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
..+.|+ ..++.+.|+... . ..++++..++.|+.|+ +||.. ++++... ...|.-+...
T Consensus 200 ~~~~Gl-----~grV~~sH~~~L-~~~~~~~~~~~i~~La~agi~Vv--~~P~snl~l~~~~--------~~~p~~rGv~ 263 (329)
T PRK06886 200 TIEHGM-----QGRVVAIHGISI-GAHSKEYRYRLYQKMREADMMVI--ACPMAWIDSNRKE--------DLMPFHNALT 263 (329)
T ss_pred HHHcCC-----CCCEEEEEeccc-cCcChhhHHHHHHHHHHcCCeEE--ECchhhhhhcccc--------ccCcCCCCCC
Confidence 334432 347888887753 2 2346777778887665 45642 3322111 0111112222
Q ss_pred hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
.+.++++.|+++++|||+.. +||. |.|...+-..+..+. ....-.++.++++++|.|+|+++|
T Consensus 264 ---pv~eL~~aGV~V~lGtDnv~----------D~~~--p~g~~Dmle~~~l~~--~~~~~~~~~~~l~maT~~gAraLg 326 (329)
T PRK06886 264 ---PADEMIPEGITVALGTDNIC----------DYMV--PLCEGDMWQELSLLA--AGCRFYDLDEMVNIASINGRKVLG 326 (329)
T ss_pred ---CHHHHHHCCCeEEEecCCCc----------ccCC--CCCCCCHHHHHHHHH--HHcCCCCHHHHHHHHhhhHHHHhC
Confidence 23345667999999999742 3442 333222211111111 112235799999999999999999
Q ss_pred CC
Q 015182 333 QV 334 (411)
Q Consensus 333 ~~ 334 (411)
++
T Consensus 327 l~ 328 (329)
T PRK06886 327 LE 328 (329)
T ss_pred CC
Confidence 74
|
|
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.7e-15 Score=134.22 Aligned_cols=249 Identities=24% Similarity=0.302 Sum_probs=140.7
Q ss_pred eeecccccCCCCCCc------------------cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC
Q 015182 4 LIDVHAHLDDPGRTE------------------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 65 (411)
Q Consensus 4 lID~H~H~~~~~~~~------------------~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (411)
|||+|+|+..+.... ........+.++++||||+.++. +..+.....+.+....+......
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STPPPTTTKAAIEAVAEAARASA 79 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeE-eecCccccchHHHHHHHHHHHhc
Confidence 799999987542211 22345567788999999999987 33322221233444433333221
Q ss_pred ceEEEEEeeecCCCc--------cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 66 YVDVGFWGGLVPENA--------YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 66 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
.+++.+..+..+... ...+.+.+..+.|+.++|++..+.. ...+.+.++++++.|+++|+++.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~i~~H~~~ 155 (275)
T cd01292 80 GIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTA----TGLSDESLRRVLEEARKLGLPVVIHAGE 155 (275)
T ss_pred CeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCC----CCCCcHHHHHHHHHHHHcCCeEEEeeCC
Confidence 344443322222111 1122233333358999998654321 1147899999999999999999999987
Q ss_pred cccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCC
Q 015182 138 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGD 217 (411)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~ 217 (411)
..... ..+..+++... .+.++.+.|+... +.+.++..++.|
T Consensus 156 ~~~~~----------------------------~~~~~~~~~~~--------~~~~~~~~H~~~~--~~~~~~~~~~~g- 196 (275)
T cd01292 156 LPDPT----------------------------RALEDLVALLR--------LGGRVVIGHVSHL--DPELLELLKEAG- 196 (275)
T ss_pred cccCc----------------------------cCHHHHHHHHh--------cCCCEEEECCccC--CHHHHHHHHHcC-
Confidence 54210 01233343322 1567889999874 234455555555
Q ss_pred CEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCch
Q 015182 218 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 297 (411)
Q Consensus 218 ~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~ 297 (411)
+.+++||.+..... +.......+.++++.|..++++||+.+.... ..
T Consensus 197 -~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~----------------~~ 243 (275)
T cd01292 197 -VSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLG----------------TD 243 (275)
T ss_pred -CeEEECCccccccc----------------CCcCCcccHHHHHHCCCcEEEecCCCCCCCC----------------CC
Confidence 46677887644321 0011123455667889999999997543110 00
Q ss_pred hhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHH
Q 015182 298 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~ 330 (411)
+-..+..+. .....+++++++++++|.|||++
T Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 244 LLALLRLLL-KVLRLGLSLEEALRLATINPARA 275 (275)
T ss_pred HHHHHHHHH-HHHhcCCCHHHHHHHHhccccCC
Confidence 000111111 11223489999999999999973
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-13 Score=113.54 Aligned_cols=307 Identities=17% Similarity=0.228 Sum_probs=187.0
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHH-HHh--cCCceEEEEEeeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD-AAE--KRIYVDVGFWGGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 77 (411)
+|+.-|+|+|+++..+-. .-.-....+||.-..-|| |..|++.+..+.-.++. .-+ .+...-+.+| +++
T Consensus 7 i~~~~DmHvHlR~g~ml~-----aVvP~~a~ggvs~AyvMP-NL~PPiTt~da~i~YkK~i~kL~skttfLMslY--Ls~ 78 (344)
T KOG2902|consen 7 ITQPDDMHVHLRDGDMLH-----AVVPHSASGGVSRAYVMP-NLKPPITTTDAAIIYKKFIMKLPSKTTFLMSLY--LSD 78 (344)
T ss_pred cCCccceeEEeccCCeee-----eeccccccCceeEEEEcC-CCCCCcchHHHHHHHHHHHHhcCccceeEEEEe--ecC
Confidence 578899999999864411 112234678999999999 88888766553332222 222 2222223333 233
Q ss_pred CCccchHHHHHHHH-CCceEEEEeccCCCCCCCCCCC--HHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 78 ENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTN--ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 78 ~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~--~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
.+ ..+.+.+..+ .++.|+|.|....+.+.....+ -+.+.-+++...+.|+++.+|-+-+..++..+
T Consensus 79 ~t--tPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~V--------- 147 (344)
T KOG2902|consen 79 KT--TPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHV--------- 147 (344)
T ss_pred CC--CHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccCCce---------
Confidence 22 1234666665 4678999987654322111112 25677788888999999999988765433111
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
..+|..-+..++.+.++. +..++.++|+++. +.++.++.++ +..+.+.+.+|||+++..+
T Consensus 148 -----------f~aE~~Flptll~Lhqrf------P~LKivlEHcTt~-dAv~~ve~a~--~~sVaaTvTahHL~Lt~~d 207 (344)
T KOG2902|consen 148 -----------FDAEKIFLPTLLQLHQRF------PQLKIVLEHCTTM-DAVNFVESAK--EGSVAATVTAHHLLLTRND 207 (344)
T ss_pred -----------ecchhhhHHHHHHHHHhC------ccceeHHHhcccH-HHHHHHHhhc--CCceeeEeehheeEEehhh
Confidence 122333455566666654 4778999999998 7888888764 4567888999999998877
Q ss_pred cCCCCcceEEcCCCCChhhHHHHHHHHhcCCc-cEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcC
Q 015182 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 313 (411)
Q Consensus 235 ~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~-~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 313 (411)
+.. .....+.|-.+...++++|.++...|.+ ..+|||.+|+....|.. . ....|+-..-..++.+.+..-++|
T Consensus 208 wqg-~P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~----~-~~cAGvysqpfA~sy~A~VFde~g 281 (344)
T KOG2902|consen 208 WQG-QPHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKES----S-CGCAGVYSQPFALSYYAKVFDEAG 281 (344)
T ss_pred hcC-CCcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCccccccc----C-CCcceeecccchHHHHHHHHhhhc
Confidence 543 4455567777888899999999888775 57899999998665531 0 011232222233443332222333
Q ss_pred CCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCC
Q 015182 314 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDND 361 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~ 361 (411)
.++.+=..++.++-...++ +++- .-|| ++. +.+|.+|..
T Consensus 282 -aLd~Lk~F~s~fG~~FY~~p~e~~------sS~I-~lK-Ke~~~vP~v 321 (344)
T KOG2902|consen 282 -ALDKLKAFTSFFGPDFYGLPDERN------SSKI-TLK-KEPWKVPDV 321 (344)
T ss_pred -hHHHHhhhHhhcCcceeccccccc------ccce-eee-cCcccCcch
Confidence 3434444556777788787 3332 2343 455 346766643
|
|
| >cd01305 archeal_chlorohydrolases Predicted chlorohydrolases | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=115.40 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=76.7
Q ss_pred HHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEE
Q 015182 117 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 196 (411)
Q Consensus 117 l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (411)
++++++.|+++|+++.+|+.+..... +. ..++.+.++ +.+. +
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~----------g~----------------~~i~~~~~~-----------~~~~-i 168 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV----------GM----------------TDIERALDL-----------EPDL-L 168 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC----------Cc----------------hhHHHHHhC-----------CCCE-E
Confidence 99999999999999999998754210 00 012232322 2222 5
Q ss_pred EcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCC
Q 015182 197 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 276 (411)
Q Consensus 197 ~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~ 276 (411)
.|+... +.+.++.+++.|+.+ .+||..-+.. +. -.+| +.++++.|+++++|||..+.
T Consensus 169 ~H~~~l--~~~~~~~la~~g~~v--~~~P~sn~~l-------~~---g~~p---------~~~l~~~Gv~v~lGtD~~~~ 225 (263)
T cd01305 169 VHGTHL--TDEDLELVRENGVPV--VLCPRSNLYF-------GV---GIPP---------VAELLKLGIKVLLGTDNVMV 225 (263)
T ss_pred EEcCCC--CHHHHHHHHHcCCcE--EEChhhHHHh-------CC---CCCC---------HHHHHHCCCcEEEECCCCcc
Confidence 676654 224566777777654 4567421110 00 1122 34557789999999996432
Q ss_pred ChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHH
Q 015182 277 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 277 ~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~ 330 (411)
+.. +.| .+.++....... ...++++++++++|.|+|++
T Consensus 226 ~~~------~~~---------~~~~~~~~~~~~-~~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 226 NEP------DMW---------AEMEFLAKYSRL-QGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred CCC------CHH---------HHHHHHHHHhcc-cccCCHHHHHHHHhhccccC
Confidence 210 011 111111111001 12469999999999999973
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. |
| >COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=98.52 Aligned_cols=86 Identities=24% Similarity=0.375 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
-+++.++..+.-.||||.+|+ +++|.|.+|.+||+.|.|.++ ..++++.++. -.+.. + .+..+|+.+|+
T Consensus 437 E~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP-~~vDps~dye------~v~ka--f-~~A~ytlK~Ge 506 (575)
T COG1229 437 ELTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNP-EQVDPSNDYE------KVEKA--F-RKAAYTLKGGE 506 (575)
T ss_pred cccHHHHHHHHhcChhhhcccccccCccCcCccCceEEEecCh-hhcCCcccHH------HHHHH--H-hheeEEecCce
Confidence 478999999999999999999 679999999999999999884 4444331211 01111 1 24679999999
Q ss_pred EEEEcCcccCCCCCccc
Q 015182 392 LVYKEGNHAPAACGSPI 408 (411)
Q Consensus 392 ~v~~~g~~~~~~~g~~~ 408 (411)
+|.++|++...+-|+.+
T Consensus 507 IvvkdGeiv~~p~grTy 523 (575)
T COG1229 507 IVVKDGEIVAEPEGRTY 523 (575)
T ss_pred EEEecceEEecccCceE
Confidence 99999999988888753
|
|
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-08 Score=89.61 Aligned_cols=241 Identities=19% Similarity=0.175 Sum_probs=125.2
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc---
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 80 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (411)
+||+|+|+..... ..+.....+.+.+.||++++.+.. . .+..+...+.++... ++....++-|...
T Consensus 1 ~~D~H~H~~~~~~--~~~~~~~l~~~~~~gv~~~v~~~~--~-----~~~~~~~~~la~~~~--~i~~~~G~hP~~~~~~ 69 (251)
T cd01310 1 LIDTHCHLDFPQF--DADRDDVLARAREAGVIKIIVVGT--D-----LKSSKRALELAKKYD--NVYAAVGLHPHDADEH 69 (251)
T ss_pred CEEeeeCCCchhh--ccCHHHHHHHHHHcCCCEEEEeCC--C-----HHHHHHHHHHHHhCC--CeEEEEeeCcchhhcC
Confidence 6999999975432 123445566677899999998762 1 122333333333222 2222233333221
Q ss_pred --cchHHHHHHHH-CCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 81 --YNASALEALLN-AGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 81 --~~~~~~~~~~~-~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
+.++.+.++++ .++.+| ++.+++...........+.++.+++.|+++|+||.+|+....
T Consensus 70 ~~~~~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~----------------- 132 (251)
T cd01310 70 VDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAH----------------- 132 (251)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch-----------------
Confidence 12445555543 356666 454443211000012346788999999999999999987531
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
..+++++++.+ ..+..+.|.... ..+.++.+.+.|+. .++++...+
T Consensus 133 -----------------~~~~~l~~~~~------~~~~~i~H~~~~--~~~~~~~~~~~g~~--~~~~~~~~~------- 178 (251)
T cd01310 133 -----------------EDVLEILKEYG------PPKRGVFHCFSG--SAEEAKELLDLGFY--ISISGIVTF------- 178 (251)
T ss_pred -----------------HHHHHHHHhcC------CCCCEEEEccCC--CHHHHHHHHHcCCE--EEeeeeecc-------
Confidence 12344555441 123335566543 33455555555653 344432110
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcC
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYG 313 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~ 313 (411)
.. ...+.+.++.+. .+.++||+ |...... +. .+ .+....+..++..+. ..+
T Consensus 179 ------------~~---~~~~~~~~~~~~~dril~~TD~-p~~~~~~------~~---~~-~~~~~~~~~~~~~la~~~g 232 (251)
T cd01310 179 ------------KN---ANELREVVKEIPLERLLLETDS-PYLAPVP------FR---GK-RNEPAYVKHVAEKIAELKG 232 (251)
T ss_pred ------------CC---CHHHHHHHHhCChHHEEEcccC-CCCCCCC------CC---CC-CCCChhHHHHHHHHHHHHC
Confidence 00 012233344332 46899996 5432110 00 01 111122333343333 478
Q ss_pred CCHHHHHHHHhHhHHHHhC
Q 015182 314 VTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg 332 (411)
++.+++.+.++.||+++||
T Consensus 233 l~~e~~~~~~~~N~~~ll~ 251 (251)
T cd01310 233 ISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred cCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999986
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-10 Score=87.33 Aligned_cols=136 Identities=24% Similarity=0.363 Sum_probs=90.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||.|||++.||...++.+.+ |++.|| |+.|.. .+++.+..
T Consensus 5 ~~g~vd~hVhlrepg~~~keti~t-----------T~~amp-nt~paP------------------------a~itv~~~ 48 (142)
T PF12890_consen 5 LPGLVDVHVHLREPGFEAKETIET-----------TWCAMP-NTFPAP------------------------AGITVEDD 48 (142)
T ss_pred ehhhhhhhhhhhcccchhhhhhhc-----------eeeecC-ccCCCC------------------------cceeeeec
Confidence 599999999999999988887654 899999 777643 01111100
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
|-.++.+ +. +++.......+.+.++. ++++..+..||+++..+.++....| ...-.++
T Consensus 49 ------------~~e~~af--sd---dg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~g----e~~q~~g 106 (142)
T PF12890_consen 49 ------------GEEAFAF--SD---DGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDG----ELPQFLG 106 (142)
T ss_pred ------------CcceEEE--ec---CCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccc----hhhHHhC
Confidence 0012211 11 23344566778888888 8899999999999987776553222 2222222
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 202 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~ 202 (411)
.. .|..+|...+.+.+.+++++ |+..|++|+++.
T Consensus 107 ~~-L~G~cEs~~~~rd~lLak~~-------g~~yhVchvstk 140 (142)
T PF12890_consen 107 VY-LKGNCESVQCARDVLLAKAT-------GCHYHVCHVSTK 140 (142)
T ss_pred Cc-CCCcchHHHHHHHHHhhhcc-------CCcEEEEEEecc
Confidence 11 22377888888888888876 899999999874
|
|
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.8e-08 Score=86.37 Aligned_cols=123 Identities=23% Similarity=0.272 Sum_probs=66.9
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC----
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 79 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 79 (411)
+||+|+|+.....+ ++.....+.+...|+++++++.. . ...++...+..+... ++....++-|..
T Consensus 1 ~iD~H~Hl~~~~~~--~~~~~~~~~~~~~Gv~~~v~~~~--~-----~~~~~~~~~~~~~~~--~i~~~~GihP~~~~~~ 69 (252)
T TIGR00010 1 LIDAHCHLDFLDFE--EDVEEVIERAKAAGVTAVVAVGT--D-----LEDFLRALELAEKYP--NVYAAVGVHPLDVDDD 69 (252)
T ss_pred CEEeccCCCChhhc--cCHHHHHHHHHHcCCCEEEEecC--C-----HHHHHHHHHHHHHCC--CEEEEEEeCcchhhcC
Confidence 69999998643221 14555567778899999998761 1 233444444333222 333333333321
Q ss_pred -ccchHHHHHHHH-CCceEEEE-eccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 80 -AYNASALEALLN-AGVLGLKS-FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 80 -~~~~~~~~~~~~-~g~~~ik~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
...++++.+.++ .++.+|.- .+++...........+.++..++.|+++|++|.+|+..
T Consensus 70 ~~~~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 70 TKEDIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred CHHHHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 122344554443 34555532 23321100000002378888899999999999999975
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-07 Score=81.97 Aligned_cols=246 Identities=17% Similarity=0.154 Sum_probs=132.4
Q ss_pred ceeecccccCCCCC-CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC--
Q 015182 3 GLIDVHAHLDDPGR-TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-- 79 (411)
Q Consensus 3 GlID~H~H~~~~~~-~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (411)
.+||+|+|+..+.+ ...++.......+...||..++..+ .+.+..+...+.++....+.. ..|+-|..
T Consensus 2 ~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v~~--~~GiHP~~~~ 72 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVA-------TTLPGYRHMRDLVGERDNVVF--SCGVHPLNQD 72 (265)
T ss_pred ceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeC-------CCHHHHHHHHHHHhhCCCeEE--EEEeCCCCCC
Confidence 37999999974322 2234556667788899999888765 234555555555543222322 22333321
Q ss_pred -ccchHHHHHHHH-CCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 80 -AYNASALEALLN-AGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 80 -~~~~~~~~~~~~-~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
...++.+.++.+ ..+.+| .+.++|.........-.+.+++.++.|.++++||.+|+.+..
T Consensus 73 ~~~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~----------------- 135 (265)
T PRK10812 73 EPYDVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR----------------- 135 (265)
T ss_pred ChhHHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch-----------------
Confidence 223555665554 345555 555555311111111235677888899999999999987632
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
..++++.++.+ .+ ..+. +.|+.+ .+.+.++.+.+.|..+.. +....+
T Consensus 136 -----------------~~~l~iL~~~~--~~--~~~~-v~H~fs--G~~~~a~~~~~~G~~is~--~g~~t~------- 182 (265)
T PRK10812 136 -----------------ADTLAILREEK--VT--DCGG-VLHCFT--EDRETAGKLLDLGFYISF--SGIVTF------- 182 (265)
T ss_pred -----------------HHHHHHHHhhc--CC--CCCE-EEEeec--CCHHHHHHHHHCCCEEEE--Ceeeec-------
Confidence 12223333220 00 1123 457765 366777777777764443 211000
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 313 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 313 (411)
+ +...+++.++..- ...+.||. |+... .|+..-.+. + ..+....+.+ .-.+
T Consensus 183 ------------~---~~~~~~~~~~~ipldrlLlETD~-P~~~p------~~~~g~~n~-P---~~i~~v~~~ia~l~g 236 (265)
T PRK10812 183 ------------R---NAEQLRDAARYVPLDRLLVETDS-PYLAP------VPHRGKENQ-P---AMVRDVAEYMAVLKG 236 (265)
T ss_pred ------------C---ccHHHHHHHHhCChhhEEEecCC-CCCCC------cCCCCCCCC-c---HHHHHHHHHHHHHhC
Confidence 0 1233444555442 35788994 55321 011100000 1 1223323333 2358
Q ss_pred CCHHHHHHHHhHhHHHHhCC
Q 015182 314 VTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~ 333 (411)
++.+++.+.++.|+.++|++
T Consensus 237 ~~~eei~~~~~~N~~~lf~~ 256 (265)
T PRK10812 237 VSVEELAQVTTDNFARLFHI 256 (265)
T ss_pred CCHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999998
|
|
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-06 Score=77.72 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCce
Q 015182 114 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 193 (411)
Q Consensus 114 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 193 (411)
.+.+++.++.|+++|+||.+|+.+... +...+++..++.+. ...+
T Consensus 135 ~~~f~~~~~lA~~~~~Pv~iH~~~~~~-------------------------------~~~~~l~~l~~~g~----~~~~ 179 (293)
T cd00530 135 EKVLRAAARAQKETGVPISTHTQAGLT-------------------------------MGLEQLRILEEEGV----DPSK 179 (293)
T ss_pred HHHHHHHHHHHHHHCCeEEEcCCCCcc-------------------------------ccHHHHHHHHHcCC----Chhh
Confidence 457889999999999999999976310 01122333333211 1234
Q ss_pred EEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc--EEcC
Q 015182 194 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID--MLSS 271 (411)
Q Consensus 194 ~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~--~~~s 271 (411)
+.+.|+... .+.+.++.+.+.|..+..+.... +.. ...++ .....+.++++++.|... .++|
T Consensus 180 ~vi~H~~~~-~~~~~~~~~~~~G~~i~~~~~~~--~~~-----------~~~~~--~~~~~~~l~~~~~~~~~d~ill~T 243 (293)
T cd00530 180 VVIGHLDRN-DDPDYLLKIAALGAYLEFDGIGK--DKI-----------FGYPS--DETRADAVKALIDEGYGDRLLLSH 243 (293)
T ss_pred eEEeCCCCC-CCHHHHHHHHhCCCEEEeCCCCc--ccc-----------cCCCC--HHHHHHHHHHHHHCCCcCCEEEeC
Confidence 578899743 35677777777786444321110 000 00011 123355677888888754 8999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHh
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~l 331 (411)
|. |..... ++ ..+-.+....+..+...+...+++.+++.++++.||+++|
T Consensus 244 D~-p~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 244 DV-FRKSYL------EK---RYGGHGYDYILTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred Cc-Cchhhh------hh---ccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 94 543211 01 0111122223333344456789999999999999999975
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=72.68 Aligned_cols=244 Identities=18% Similarity=0.137 Sum_probs=125.5
Q ss_pred CceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC--
Q 015182 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-- 79 (411)
Q Consensus 2 PGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (411)
+.+||+|+|+.... ..++.......+...||+.++.++ .+++..+...+.++....+ ....|+-|..
T Consensus 3 ~~~iD~HcHl~~~~--~~~~~~~~l~~a~~~gv~~~~~~~-------~~~~~~~~~~~l~~~~~~v--~~~~GiHP~~~~ 71 (258)
T PRK11449 3 CRFIDTHCHFDFPP--FSGDEEASLQRAAQAGVGKIIVPA-------TEAENFARVLALAERYQPL--YAALGLHPGMLE 71 (258)
T ss_pred ceEEEeccCCCChh--hccCHHHHHHHHHHCCCCEEEEee-------CCHHHHHHHHHHHHhCCCE--EEEEeeCcCccc
Confidence 56899999996432 233444556667788999998776 2344555555554432222 2222332311
Q ss_pred ---ccchHHHHHHHH-C--CceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcC
Q 015182 80 ---AYNASALEALLN-A--GVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL 152 (411)
Q Consensus 80 ---~~~~~~~~~~~~-~--g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~ 152 (411)
.+.++.+.++++ . .+.+| -+.+++.........-.+.+.+.++.|.++++||.+|+.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~------------- 138 (258)
T PRK11449 72 KHSDVSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH------------- 138 (258)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc-------------
Confidence 123455555443 1 34444 223333210000011236778888999999999999998632
Q ss_pred CccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 153 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
..++++.++.+. ..+ -+.|+.+. +.+.++.+.+.|..+. +++...+
T Consensus 139 ---------------------~~~~~il~~~~~-----~~~-~i~H~fsG--~~~~a~~~l~~G~~iS--~~g~it~--- 184 (258)
T PRK11449 139 ---------------------DKLAMHLKRHDL-----PRT-GVVHGFSG--SLQQAERFVQLGYKIG--VGGTITY--- 184 (258)
T ss_pred ---------------------HHHHHHHHhcCC-----CCC-eEEEcCCC--CHHHHHHHHHCCCEEE--eCccccc---
Confidence 122333333210 112 26687663 6777777777776433 3322111
Q ss_pred cccCCCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-H
Q 015182 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-G 309 (411)
Q Consensus 233 ~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~ 309 (411)
+ +...+++.++. . -.+.+.||. |+-. ..++. |....-..+...+.. .
T Consensus 185 -------------~------~~~~~~~~~~~ipldriL~ETD~-P~l~------p~~~~----~~~n~p~~~~~~~~~ia 234 (258)
T PRK11449 185 -------------P------RASKTRDVIAKLPLASLLLETDA-PDMP------LNGFQ----GQPNRPEQAARVFDVLC 234 (258)
T ss_pred -------------c------CcHHHHHHHHhCChhhEEEecCC-CCCC------CCCCC----CCCCCChHHHHHHHHHH
Confidence 0 01122333322 1 134788994 5421 01111 100001122233332 2
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.-.+++++++.+..+.|..++|++
T Consensus 235 ~l~~~~~~el~~~~~~N~~~lf~~ 258 (258)
T PRK11449 235 ELRPEPADEIAEVLLNNTYTLFNV 258 (258)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhCc
Confidence 345799999999999999999875
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=72.55 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=68.5
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC----
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 79 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 79 (411)
+||+|+|+.... ..++.....+.+...||..++..+ .+++.+....+.++....+. ...|+-|..
T Consensus 1 ~iDtH~HL~~~~--~~~d~~~vl~~a~~~gv~~~i~~~-------~~~~~~~~~~~l~~~~~~v~--~~~GiHP~~~~~~ 69 (258)
T PRK10425 1 MFDIGVNLTSSQ--FAKDRDDVVARAFAAGVNGMLITG-------TNLRESQQAQKLARQYPSCW--STAGVHPHDSSQW 69 (258)
T ss_pred CEEeeeCcCChh--hhccHHHHHHHHHHCCCCEEEEeC-------CCHHHHHHHHHHHHhCCCEE--EEEEeCcCccccC
Confidence 699999996432 234555667778889999988765 22445555555544322222 222333321
Q ss_pred -ccchHHHHHHHHC-CceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 80 -AYNASALEALLNA-GVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 80 -~~~~~~~~~~~~~-g~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
.+.++.+.++.+. .+.+|. +.++|.........-.+.+++-++.|.++++||.+|+.+
T Consensus 70 ~~~~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~ 130 (258)
T PRK10425 70 QAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRD 130 (258)
T ss_pred CHHHHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 2234455555432 333332 334442100000011256778888999999999999985
|
|
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-05 Score=72.44 Aligned_cols=255 Identities=15% Similarity=0.145 Sum_probs=137.7
Q ss_pred ceeecccccCCC--CC--------CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEE
Q 015182 3 GLIDVHAHLDDP--GR--------TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 72 (411)
Q Consensus 3 GlID~H~H~~~~--~~--------~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (411)
|+..+|=|+... +. ...+......+...+.|+.|++|+. +.. .-.+++.+++..+. ..+++...
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T-~~g-~GRd~~~l~~is~~----tgv~Iv~~ 80 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMT-NRY-MGRNAQFMLDVMRE----TGINVVAC 80 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecC-CCc-cCcCHHHHHHHHHH----hCCcEEEc
Confidence 788999998532 11 1112233445566689999999986 222 22456666655432 22444322
Q ss_pred eeecCC--Cc-----cchHHHHHH----HHCCc-------eEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 73 GGLVPE--NA-----YNASALEAL----LNAGV-------LGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 73 ~~~~~~--~~-----~~~~~~~~~----~~~g~-------~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
-|+... .+ ...+++.++ +..|+ ..| |+..++. ...-...+.++++.+.+.+.|.||.+
T Consensus 81 TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~---~it~~E~kvl~Aaa~a~~~TG~pi~~ 157 (292)
T PRK09875 81 TGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEG---KITPLEEKVFIAAALAHNQTGRPIST 157 (292)
T ss_pred CcCCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCC---CCCHHHHHHHHHHHHHHHHHCCcEEE
Confidence 121110 00 011222221 12222 224 4433322 11122335677778888899999999
Q ss_pred ecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHh
Q 015182 134 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK 213 (411)
Q Consensus 134 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~ 213 (411)
|+..... +. +.++++.+.|. .-.++.+.|+... .+.+.+++..
T Consensus 158 Ht~~~~~-------------------------------g~-e~l~il~e~Gv----d~~rvvi~H~d~~-~d~~~~~~l~ 200 (292)
T PRK09875 158 HTSFSTM-------------------------------GL-EQLALLQAHGV----DLSRVTVGHCDLK-DNLDNILKMI 200 (292)
T ss_pred cCCCccc-------------------------------hH-HHHHHHHHcCc----CcceEEEeCCCCC-CCHHHHHHHH
Confidence 9654221 11 12444444411 1247899999765 5777888887
Q ss_pred HCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcC--CccEEcCCCCCCChhhhhcccCCcccc
Q 015182 214 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKA 291 (411)
Q Consensus 214 ~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G--~~~~~~sD~~p~~~~~k~~~~~~~~~~ 291 (411)
++|+.+-.+. + +. ....| .......+...++.| -.+.+++|...... + .
T Consensus 201 ~~G~~l~fD~-~-------------g~-~~~~p---d~~r~~~i~~L~~~Gy~drilLS~D~~~~~~---------~-~- 251 (292)
T PRK09875 201 DLGAYVQFDT-I-------------GK-NSYYP---DEKRIAMLHALRDRGLLNRVMLSMDITRRSH---------L-K- 251 (292)
T ss_pred HcCCEEEecc-C-------------CC-cccCC---HHHHHHHHHHHHhcCCCCeEEEeCCCCCccc---------c-c-
Confidence 8887554321 0 10 01112 122234555556667 35678999643211 1 1
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 292 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 292 ~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
+.|-.|..+.+..+...+.+.|++-+++=++.-.||+++|+
T Consensus 252 ~~gg~G~~~i~~~~ip~L~~~Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 252 ANGGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred ccCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence 22335566666666666678899999999999999999874
|
|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-05 Score=70.46 Aligned_cols=243 Identities=18% Similarity=0.142 Sum_probs=128.2
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC--ceEEEEEeeec-CCCc
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI--YVDVGFWGGLV-PENA 80 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~ 80 (411)
|||+|+|+... ...++.......+...||+-+...+ .+.+.++...+.++... +..++++.... ....
T Consensus 3 liDtH~HL~~~--~~~~d~~~vi~~a~~~gv~~~~~~g-------~~~~~~~~~~~la~~y~~v~~~~G~HP~~~~~~~~ 73 (256)
T COG0084 3 LIDTHCHLDFE--EFDEDRDEVIARAREAGVKKMVVVG-------TDLEDFKRALELAEKYPNVYAAVGVHPLDADEHSE 73 (256)
T ss_pred cEEeeeCCCch--hhcCCHHHHHHHHHHcCCcEEEEee-------cCHHHHHHHHHHHHhCCCeEEEEeeCCCccccccH
Confidence 79999999752 2344555667778899999998776 22344444444444322 22233332110 0112
Q ss_pred cchHHHHHHHH--CCceEEEE-eccCCCCCC-CCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 81 YNASALEALLN--AGVLGLKS-FMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 81 ~~~~~~~~~~~--~g~~~ik~-~~~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
+.++.+.+++. ..+.+|.- .++|.-... ....-.+.+++-++.|+++++|+.+|+.+..
T Consensus 74 ~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~----------------- 136 (256)
T COG0084 74 EDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH----------------- 136 (256)
T ss_pred HHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH-----------------
Confidence 34556666664 34544432 233321000 0000135677788899999999999998732
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
+.++++.++.+ ...--+.|+.+ .+.+.++++-+.|..+. ++..-.|-.
T Consensus 137 -----------------~d~~~iL~~~~------~~~~gi~HcFs--Gs~e~a~~~~d~G~yis--isG~itfk~----- 184 (256)
T COG0084 137 -----------------EDTLEILKEEG------APVGGVLHCFS--GSAEEARKLLDLGFYIS--ISGIVTFKN----- 184 (256)
T ss_pred -----------------HHHHHHHHhcC------CCCCEEEEccC--CCHHHHHHHHHcCeEEE--ECceeecCC-----
Confidence 23344444431 11223678887 47888888888785443 333221111
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCC---ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-Hhc
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGH---IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKY 312 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~---~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~ 312 (411)
...+++.++. + ...+=|| +|+-.. .||..-.+ -|. .+......+ .-.
T Consensus 185 -----------------a~~~~ev~~~-iPldrLL~ETD-sPyl~P------~p~rGkrN-eP~---~v~~v~~~iAelk 235 (256)
T COG0084 185 -----------------AEKLREVARE-LPLDRLLLETD-APYLAP------VPYRGKRN-EPA---YVRHVAEKLAELK 235 (256)
T ss_pred -----------------cHHHHHHHHh-CCHhHeEeccC-CCCCCC------cCCCCCCC-Cch---HHHHHHHHHHHHh
Confidence 1122222221 1 1356688 455321 11211000 011 222222222 234
Q ss_pred CCCHHHHHHHHhHhHHHHhCC
Q 015182 313 GVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~ 333 (411)
+++++++.+..|.|.-++|++
T Consensus 236 ~~~~eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 236 GISAEEVAEITTENAKRLFGL 256 (256)
T ss_pred CCCHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999874
|
|
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.6e-05 Score=69.64 Aligned_cols=244 Identities=20% Similarity=0.178 Sum_probs=121.4
Q ss_pred eecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC-----
Q 015182 5 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN----- 79 (411)
Q Consensus 5 ID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 79 (411)
||+|+|+... ...++.....+.+...|++.++.+.. +.+.+....+.++... ..+....|+-|..
T Consensus 1 iD~H~Hl~~~--~~~~~~~~~~~~~~~~g~~~~i~~~~-------~~~~~~~~~~~~~~~~-~~v~~~~GiHP~~~~~~~ 70 (255)
T PF01026_consen 1 IDAHCHLDSP--RFEEDRPEVLERAREAGVSAIIIVST-------DPEDWERVLELASQYP-DRVYPALGIHPWEAHEVN 70 (255)
T ss_dssp EEEEE-TTSG--GGTTTHHHHHHHHHHTTEEEEEEEES-------SHHHHHHHHHHHHHTT-TEEEEEE---GGGGGGHS
T ss_pred CcCccCCCCh--hhCcCHHHHHHHHHHcCCCEEEEcCC-------CHHHhHHHHHHHhcCC-CeEEEEecCCcchhhhhh
Confidence 8999999762 12344556678889999999987651 2344444444443221 1222223333321
Q ss_pred ccchHHHHHH--HH-CCceEE-EEeccCCCCCC-CCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 80 AYNASALEAL--LN-AGVLGL-KSFMCPSGIND-FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 80 ~~~~~~~~~~--~~-~g~~~i-k~~~~~~~~~~-~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
.+.++.+.++ .. ..+.+| -+.+++..... ....-.+.+++.++.|.++++||.+|+.+.
T Consensus 71 ~~~~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a---------------- 134 (255)
T PF01026_consen 71 EEDLEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKA---------------- 134 (255)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESH----------------
T ss_pred HHHHHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCc----------------
Confidence 1223455555 32 344444 33344421000 001123567788899999999999999872
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
..+++++.++.+ . .+.+ -+.|..+. +.+.++.+.+.|+ ..++++.-.+.
T Consensus 135 ------------------~~~~l~il~~~~--~--~~~~-~i~H~f~g--~~~~~~~~~~~g~--~~S~~~~~~~~---- 183 (255)
T PF01026_consen 135 ------------------HEELLEILKEYG--P--PNLR-VIFHCFSG--SPEEAKKFLDLGC--YFSFSGAITFK---- 183 (255)
T ss_dssp ------------------HHHHHHHHHHTT--G--GTSE-EEETT--S---HHHHHHHHHTTE--EEEEEGGGGST----
T ss_pred ------------------HHHHHHHHHhcc--c--ccee-EEEecCCC--CHHHHHHHHhcCc--eEEeccccccc----
Confidence 223455555541 0 0223 46688664 6666777666664 44444432211
Q ss_pred cCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 015182 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 313 (411)
Q Consensus 235 ~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 313 (411)
.......+...+. .-...+-|| +|+... .++. |....-..+....+.+ .-.+
T Consensus 184 ---------------~~~~~~~~~~~ip-~drillETD-~P~~~~------~~~~----~~~~~p~~i~~~~~~la~~~~ 236 (255)
T PF01026_consen 184 ---------------NSKKVRELIKAIP-LDRILLETD-APYLAP------DPYR----GKPNEPSNIPKVAQALAEIKG 236 (255)
T ss_dssp ---------------TSHHHHHHHHHS--GGGEEEE-B-TTSSEC------TTST----TSE--GGGHHHHHHHHHHHHT
T ss_pred ---------------ccHHHHHHHhcCC-hhhEEEcCC-CCcCCc------cccC----CCCCChHHHHHHHHHHHHHcC
Confidence 0011122222221 123467899 454321 1111 1011111233333332 3368
Q ss_pred CCHHHHHHHHhHhHHHHhC
Q 015182 314 VTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg 332 (411)
++++++.+....|..++||
T Consensus 237 ~~~e~~~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 237 ISLEELAQIIYENAKRLFG 255 (255)
T ss_dssp STHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999986
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.8e-05 Score=70.99 Aligned_cols=143 Identities=17% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 015182 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 191 (411)
Q Consensus 112 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~ 191 (411)
.+.+++..+++.|+++|+++.+|+.+..... .+..+++ .. |
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~-----------------------------~~~~a~~---~~-------g 210 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAGGPE-----------------------------SVRDALD---LL-------G 210 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCCCHH-----------------------------HHHHHHH---Hc-------C
Confidence 3779999999999999999999997643211 1112222 11 1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcC
Q 015182 192 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271 (411)
Q Consensus 192 ~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~s 271 (411)
. ..+.|+....++.+.++.++++|+ .+++||..-+.. +. .+. .....+.++++.|+++++||
T Consensus 211 ~-~~i~H~~~l~~~~~~~~~l~~~gi--~v~~~P~sn~~l-------~~----~~~----~~~~p~~~l~~~Gv~v~lgT 272 (325)
T cd01320 211 A-ERIGHGIRAIEDPELVKRLAERNI--PLEVCPTSNVQT-------GA----VKS----LAEHPLRELLDAGVKVTINT 272 (325)
T ss_pred C-cccchhhccCccHHHHHHHHHcCC--eEEECCCccccc-------cc----cCC----cccChHHHHHHCCCEEEECC
Confidence 1 135565543012356777777775 556788532110 00 000 01223456678899999999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
|..+... .+ +...+..+ ...++++++ +..+|.|+++...+
T Consensus 273 D~~~~~~----------------~~-----~~~e~~~~~~~~~l~~~e-l~~~~~na~~~~f~ 313 (325)
T cd01320 273 DDPTVFG----------------TY-----LTDEYELLAEAFGLTEEE-LKKLARNAVEASFL 313 (325)
T ss_pred CCCcccC----------------CC-----HHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence 9633211 01 11112222 345899999 45588999999887
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00019 Score=67.91 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 015182 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 191 (411)
Q Consensus 112 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~ 191 (411)
.+.+.+..+++.|+++|+++.+|+.+..... .+...++. . |
T Consensus 179 ~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~-----------------------------~~~~al~~---l-------g 219 (340)
T PRK09358 179 FPPSKFARAFDRARDAGLRLTAHAGEAGGPE-----------------------------SIWEALDE---L-------G 219 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEcCCCCCchh-----------------------------HHHHHHHH---c-------C
Confidence 4678999999999999999999998632100 11122221 1 1
Q ss_pred ceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcC
Q 015182 192 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271 (411)
Q Consensus 192 ~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~s 271 (411)
.. .+.|+....++.++++.++++|+ .+++||..-... + ..+.+ ....+.++++.|+++++||
T Consensus 220 ~~-ri~Hg~~l~~~~~~~~~l~~~gi--~v~~cP~Sn~~l-------~----~~~~~----~~~pi~~l~~~Gv~v~lgT 281 (340)
T PRK09358 220 AE-RIGHGVRAIEDPALMARLADRRI--PLEVCPTSNVQT-------G----AVPSL----AEHPLKTLLDAGVRVTINT 281 (340)
T ss_pred Cc-ccchhhhhccCHHHHHHHHHcCC--eEEECCCccccc-------c----ccCCc----ccChHHHHHHCCCEEEECC
Confidence 11 24565532013356777777775 556788632111 0 00000 1123456678899999999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
|...... .+ + ...+.......+++++++ ..++.|+.+.-.+
T Consensus 282 D~~~~~~----------------~~-l---~~e~~~~~~~~~l~~~el-~~l~~nai~~sf~ 322 (340)
T PRK09358 282 DDPLVFG----------------TT-L---TEEYEALAEAFGLSDEDL-AQLARNALEAAFL 322 (340)
T ss_pred CCCcccC----------------CC-H---HHHHHHHHHHhCCCHHHH-HHHHHHHHHHHCC
Confidence 9632211 01 1 111111223358999995 6668999988776
|
|
| >KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-06 Score=74.39 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=54.4
Q ss_pred HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 309 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 309 ~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
....+-|++-|++.+|.-||.+||+ ++||++..|.+||||++|.+ -.|..||
T Consensus 344 ~kATgCs~e~AleaAtlhPAqlLg~ek~KGTLDfG~dADFVllDd~---------------------------l~V~aT~ 396 (407)
T KOG3892|consen 344 LKATGCSMESALEAATLHPAQLLGLEKSKGTLDFGADADFVLLDDS---------------------------LHVQATY 396 (407)
T ss_pred HHhcCCcHHHHHhhhccChHHhhccccccccccccccCceEEEccc---------------------------eEEEEEE
Confidence 3456899999999999999999999 88999999999999999932 2589999
Q ss_pred ECCEEEEEc
Q 015182 388 SRGNLVYKE 396 (411)
Q Consensus 388 ~~G~~v~~~ 396 (411)
+.|+.|++.
T Consensus 397 isG~~V~~a 405 (407)
T KOG3892|consen 397 ISGELVWQA 405 (407)
T ss_pred EccEEEEec
Confidence 999999974
|
|
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00015 Score=68.06 Aligned_cols=144 Identities=22% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 015182 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 191 (411)
Q Consensus 112 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~ 191 (411)
.+.+.+.++++.|+++|+++.+|+.+..... .+...+. +. |
T Consensus 169 ~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~-----------------------------~~~~~~~---~~-------g 209 (324)
T TIGR01430 169 GPPPDFVRAFAIARELGLHLTVHAGELGGPE-----------------------------SVREALD---DL-------G 209 (324)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEecCCCCChH-----------------------------HHHHHHH---Hc-------C
Confidence 4578999999999999999999998642100 0111111 11 2
Q ss_pred ceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcC
Q 015182 192 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271 (411)
Q Consensus 192 ~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~s 271 (411)
.. .+.|+....++.+.++.++++|+ ..++||..-... + ..+. .....+.++++.|+++++||
T Consensus 210 ~~-ri~Hg~~l~~~~~~i~~l~~~gi--~v~~cP~Sn~~l-------~----~~~~----~~~~pi~~l~~~Gv~v~igT 271 (324)
T TIGR01430 210 AT-RIGHGVRALEDPELLKRLAQENI--TLEVCPTSNVAL-------G----VVKS----LAEHPLRRFLEAGVKVTLNS 271 (324)
T ss_pred ch-hcchhhhhccCHHHHHHHHHcCc--eEEECCcccccc-------c----ccCC----cccChHHHHHHCCCEEEECC
Confidence 21 25565432023356777777775 556788542211 0 0000 01223456688899999999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
|..... +.+ + ...+.......++++++ +..+|.|+++....
T Consensus 272 D~~~~~----------------~~~-l---~~e~~~a~~~~~l~~~e-l~~~~~na~~~~f~ 312 (324)
T TIGR01430 272 DDPAYF----------------GSY-L---TEEYEIAAKHAGLTEEE-LKQLARNALEGSFL 312 (324)
T ss_pred CCCccc----------------CCC-H---HHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCC
Confidence 963221 111 1 11111123346899999 78999999999887
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00042 Score=58.91 Aligned_cols=236 Identities=19% Similarity=0.244 Sum_probs=124.8
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHh-------cCCceEEEEEeeec
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE-------KRIYVDVGFWGGLV 76 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 76 (411)
+||+|+|+..-+++ -...+..+||-+++....+.-| ..+.+.+....++.- ....++.....|+-
T Consensus 2 ~iD~HiH~d~r~~e-------DlekMa~sGI~~Vit~AhdP~~-~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 2 YIDSHIHLDVRGFE-------DLEKMALSGIREVITLAHDPYP-MKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred ccccccccccccHH-------HHHHHHHhChhhhhhcccCCCC-cccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC
Confidence 69999999754432 2344566777777665422222 245555554332211 11223443333433
Q ss_pred CC----Cc-cchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccC
Q 015182 77 PE----NA-YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 150 (411)
Q Consensus 77 ~~----~~-~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~ 150 (411)
|. +. ..+.++.++.. .++.+|.- ++.. ..+--..+.+++-++.|+++++|+.+|.....-.
T Consensus 74 Pr~iP~e~~~~l~~L~~~l~~e~VvAiGE-iGLe---~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~--------- 140 (254)
T COG1099 74 PRAIPPELEEVLEELEELLSNEDVVAIGE-IGLE---EATDEEKEVFREQLELARELDVPVIVHTPRRNKK--------- 140 (254)
T ss_pred CCCCCchHHHHHHHHHhhcccCCeeEeee-cccc---cCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcch---------
Confidence 32 21 22344444443 45655532 1111 1111133567788889999999999998653210
Q ss_pred cCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHH-HHHHHhHCCCCEEEEccccccc
Q 015182 151 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLD-LLMEAKTNGDSITVETCPHYLA 229 (411)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~-~i~~~~~~g~~i~~~~~p~~l~ 229 (411)
.++.++++++...++. ...+.+.|++. +.++ ++ +.+..+..+++|.-+
T Consensus 141 --------------------e~t~~ildi~~~~~l~----~~lvvIDH~N~--etv~~vl----d~e~~vGlTvqPgKl- 189 (254)
T COG1099 141 --------------------EATSKILDILIESGLK----PSLVVIDHVNE--ETVDEVL----DEEFYVGLTVQPGKL- 189 (254)
T ss_pred --------------------hHHHHHHHHHHHcCCC----hhheehhcccH--HHHHHHH----hccceEEEEecCCcC-
Confidence 2355667777655321 44577889875 3554 33 335556666777321
Q ss_pred ccccccCCCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH
Q 015182 230 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 307 (411)
Q Consensus 230 ~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~ 307 (411)
+.++. .+-+++ | ....+.||...... +++ .++...-
T Consensus 190 --------------------t~~eA---veIV~ey~~~r~ilnSD~~s~~s-------d~l------------avprtal 227 (254)
T COG1099 190 --------------------TVEEA---VEIVREYGAERIILNSDAGSAAS-------DPL------------AVPRTAL 227 (254)
T ss_pred --------------------CHHHH---HHHHHHhCcceEEEecccccccc-------cch------------hhhHHHH
Confidence 11111 122222 5 34567788432111 121 2233222
Q ss_pred HHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 308 YGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 308 ~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.+...|++-+++-+.+-.|+-+++|+
T Consensus 228 ~m~~~gv~~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 228 EMEERGVGEEEIEKVVRENALSFYGL 253 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCc
Confidence 34567999999999999999888875
|
|
| >PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.6e-07 Score=62.45 Aligned_cols=36 Identities=47% Similarity=0.796 Sum_probs=23.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeE
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTL 37 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv 37 (411)
+|||||+|+|+..+.... .......+.++++|||||
T Consensus 33 ~PG~ID~H~H~~~~~~~~-~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 33 MPGFIDMHTHLGEPGWQS-LDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EE-EEEEEE-TTTTCEGG-CTCHHHHHHHHHTTEEEE
T ss_pred eCCeEeeeeccccccccc-cchhhHHHHHHCcceeeC
Confidence 699999999987432221 122456677889999997
|
... |
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00013 Score=67.27 Aligned_cols=269 Identities=19% Similarity=0.204 Sum_probs=128.5
Q ss_pred ceeecccccCCC--CC--------C----ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceE
Q 015182 3 GLIDVHAHLDDP--GR--------T----EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 68 (411)
Q Consensus 3 GlID~H~H~~~~--~~--------~----~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (411)
|+..+|=|+... +. . ..+......+.+-+.|+.|++|+. ... .-.+++.+++..+...-+....
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T-~~g-~GRd~~~l~~is~~tGv~II~~ 84 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDAT-PIG-LGRDVEALREISRRTGVNIIAS 84 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE---SGG-GTB-HHHHHHHHHHHT-EEEEE
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecC-Ccc-cCcCHHHHHHHHHHhCCeEEEe
Confidence 788899998532 11 1 112223355566789999999986 221 2245666665543221111112
Q ss_pred EEEEeeecCCC---ccchHHHHHH----HHCCc-------eEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 69 VGFWGGLVPEN---AYNASALEAL----LNAGV-------LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 69 ~~~~~~~~~~~---~~~~~~~~~~----~~~g~-------~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
.++|....... ....+++.++ +..|+ ..||...++. .+.-.....++++....++.|++|++|
T Consensus 85 TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~---~it~~E~k~lrAaa~A~~~TG~pI~~H 161 (308)
T PF02126_consen 85 TGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSN---PITPLEEKVLRAAARAHKETGAPISTH 161 (308)
T ss_dssp EEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTT---BCEHHHHHHHHHHHHHHHHHT-EEEEE
T ss_pred CCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccC---CCCHHHHHHHHHHHHHHHHhCCeEEEc
Confidence 23332111000 0112333332 22343 2466544332 111122346777777778899999999
Q ss_pred cCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhH
Q 015182 135 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 214 (411)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~ 214 (411)
+...... -.+.+++..+.|. .-.++.++|+... .+.+.++++.+
T Consensus 162 ~~~g~~~-------------------------------~~e~~~il~e~Gv----~~~rvvigH~D~~-~D~~y~~~la~ 205 (308)
T PF02126_consen 162 TGRGTRM-------------------------------GLEQLDILEEEGV----DPSRVVIGHMDRN-PDLDYHRELAD 205 (308)
T ss_dssp ESTTGTC-------------------------------HHHHHHHHHHTT------GGGEEETSGGGS-T-HHHHHHHHH
T ss_pred CCCCCcC-------------------------------HHHHHHHHHHcCC----ChhHeEEeCCCCC-CCHHHHHHHHh
Confidence 9764310 1122333444321 1347899999866 68888888878
Q ss_pred CCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChhhhhcccCCccccC
Q 015182 215 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAW 292 (411)
Q Consensus 215 ~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~~k~~~~~~~~~~~ 292 (411)
+|+.+..+.--+.++ .. ..+....+ ++ +....+.+..++++|- .+.+|.|-.-... ..+
T Consensus 206 ~G~~l~~D~~g~~~~-g~----~~~~~~~~-~~--d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~-----------~~~ 266 (308)
T PF02126_consen 206 RGVYLEFDTIGREFS-GK----DKNPRVGY-PP--DEERIELLKELIEEGYADQILLSHDIGRKSR-----------LYR 266 (308)
T ss_dssp TT-EEEETTTT-B-T-TT----TTCHSCTT-S---HHHHHHHHHHHHHTTTGGGEEE-HHHESEEG-----------SSS
T ss_pred cCCEEEecCCccccc-Cc----ccCccCCC-CC--HHHHHHHHHHHHHcCCcCcEEEecccccccc-----------ccc
Confidence 887655432211100 00 00000001 11 2233456667777876 4578888432100 112
Q ss_pred CCCchh--hhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHh
Q 015182 293 GGISSL--QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 293 ~g~~~~--~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~l 331 (411)
.|..+. .+.+..+.-.+.+.|++-+++=++...||+|+|
T Consensus 267 ~gg~g~~~~~i~~~fiP~L~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 267 YGGGGYGYIYILTRFIPRLKERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp CCHHHHTTTHHHHTHHHHHHHTTS-HHHHHHHHTHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHc
Confidence 222221 122222333456789999999999999999987
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0085 Score=53.84 Aligned_cols=267 Identities=17% Similarity=0.165 Sum_probs=128.0
Q ss_pred ceeecccccCCCCC----Ccc----------CChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceE
Q 015182 3 GLIDVHAHLDDPGR----TEW----------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 68 (411)
Q Consensus 3 GlID~H~H~~~~~~----~~~----------~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (411)
|+..+|=|+....+ ..+ ..+....+...+.|+.||+|+. +..-+ .+...+.+..++...+.-.-
T Consensus 17 GvTl~HEHl~~~~~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T-~~~~G-Rdv~~m~~vs~atglnIV~~ 94 (316)
T COG1735 17 GVTLMHEHLFIDPYEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDAT-NIGIG-RDVLKMRRVAEATGLNIVAA 94 (316)
T ss_pred cceeehhhhccchHHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCC-ccccC-cCHHHHHHHHHHhCCcEEEe
Confidence 77888888853311 111 1122344556789999999987 33222 45556665543322111111
Q ss_pred EEEEeeecCCCc---cchHHHHHH----HHCCc-------eEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 69 VGFWGGLVPENA---YNASALEAL----LNAGV-------LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 69 ~~~~~~~~~~~~---~~~~~~~~~----~~~g~-------~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
.++|....-... -.++++.++ ++.|. .-||..-++ +++.......|+++.+..++-|.|+.+|
T Consensus 95 TGfy~~~~~p~~~~~~~i~~~ae~~v~ei~~Gi~gT~ikAGiIk~~~~~---~~iTp~Eek~lrAaA~A~~~Tg~Pi~tH 171 (316)
T COG1735 95 TGFYKAAFHPEYFALRPIEELAEFVVKEIEEGIAGTGIKAGIIKEAGGS---PAITPLEEKSLRAAARAHKETGAPISTH 171 (316)
T ss_pred ccccccccchhHHhhCCHHHHHHHHHHHHHhcccCCccccceeeeccCc---ccCCHHHHHHHHHHHHHhhhcCCCeEEe
Confidence 122211110000 012233332 23342 234432222 2222223345667777777899999999
Q ss_pred cCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC-ChHHHHHHHHHHh
Q 015182 135 AEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS-DASSSLDLLMEAK 213 (411)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~-~~~~~~~~i~~~~ 213 (411)
...-.. ++ +.+++..+.+ ..-.++.++|+. +. ++..-.+.++
T Consensus 172 t~~gt~-------------------------------g~-eq~~il~~eg----vdl~~v~igH~d~n~-dd~~y~~~l~ 214 (316)
T COG1735 172 TPAGTM-------------------------------GL-EQLRILAEEG----VDLRKVSIGHMDPNT-DDVYYQKKLA 214 (316)
T ss_pred ccchhh-------------------------------hH-HHHHHHHHcC----CChhHeeEeccCCCC-ChHHHHHHHH
Confidence 876321 11 1223333321 113468899998 66 7888888888
Q ss_pred HCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc--EEcCCCCCCChhhhhcccCCcccc
Q 015182 214 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID--MLSSDHSPTVPELKLLDEGNFLKA 291 (411)
Q Consensus 214 ~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~--~~~sD~~p~~~~~k~~~~~~~~~~ 291 (411)
.+|..+..+ .- | ..++.| +......+.+.+++|..+ .+|-|.+......... ....
T Consensus 215 ~~Ga~l~fD---------~i-----G-~d~y~p---d~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~~~---~~~~- 272 (316)
T COG1735 215 DRGAFLEFD---------RI-----G-KDKYYP---DEDRIAPLLELVARGYADLILLSHDDICLSDDVFLK---SMLK- 272 (316)
T ss_pred hcCceEEec---------cc-----C-ccccCc---HHHhhhhHHHHHHhhHhhheecccchhhhhhhHHHH---hhhh-
Confidence 888644322 10 1 111222 122234455556666532 3441322221111100 0000
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 292 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 292 ~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
..|-.+....+..+.-.+++.|++-+++=++.--||+++|..
T Consensus 273 ~~~~~g~~~I~~~fIP~Lk~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 273 ANGGWGYGYILNDFIPRLKRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred hcCCcccchhhHhhHHHHHHcCCCHHHHHHHHhhCHHHHhcc
Confidence 011122222222333345788999777777777999999875
|
|
| >cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.017 Score=52.55 Aligned_cols=122 Identities=19% Similarity=0.153 Sum_probs=68.3
Q ss_pred ceeecccccCCCCCC----------ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEE
Q 015182 3 GLIDVHAHLDDPGRT----------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 72 (411)
Q Consensus 3 GlID~H~H~~~~~~~----------~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (411)
|.||+|+|+..+... +.-++..-...+-..||+..+-+. ......++ ..+.+..+ .. ..+. ++.
T Consensus 1 ~~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq-~~~~~~~n-~~~~~~~~--~~-~r~~-g~~ 74 (263)
T cd01311 1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQ-ASIYGADN-SNLLDALA--SN-GKAR-GGA 74 (263)
T ss_pred CCEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeC-ccccCCch-HHHHHHHh--hC-CCeE-EEE
Confidence 689999999755321 112222233444578988777554 11111122 22222221 11 1221 111
Q ss_pred eeecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 73 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
.+.+.. ...+.++++.+.|+.|+|+..... +. .+.+.+..+++.+.++|+++.+|+..
T Consensus 75 -~~~p~~-~~~~~l~~~~~~g~rGvRl~~~~~---~~--~~~~~~~~~~~~~~~~gl~v~~~~~~ 132 (263)
T cd01311 75 -TVDPRT-TTDAELKEMHDAGVRGVRFNFLFG---GV--DNKDELDEIAKRAAELGWHVQVYFDA 132 (263)
T ss_pred -EECCCC-CCHHHHHHHHHCCCeEEEEecccC---CC--CCHHHHHHHHHHHHHcCCEEEEEeCH
Confidence 121222 123566777778999999864332 22 27788899999999999999999864
|
This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature. |
| >PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00016 Score=46.57 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=21.4
Q ss_pred eEEEEEEECCEEEEEcCcccCCCCCccccC
Q 015182 381 GKVLATISRGNLVYKEGNHAPAACGSPILA 410 (411)
Q Consensus 381 ~~v~~ti~~G~~v~~~g~~~~~~~g~~~~~ 410 (411)
..+.+|||||++|+++|+++...+|+.||.
T Consensus 18 ~GI~~V~VNG~~vv~~g~~t~~~~G~~lrr 47 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVEDGEVTGARPGRVLRR 47 (48)
T ss_dssp BSEEEEEETTEEEECTTEESSS----B---
T ss_pred CCEEEEEECCEEEEECCeECCCCCCeEecC
Confidence 358999999999999999999999999986
|
5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A. |
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.18 Score=47.90 Aligned_cols=143 Identities=15% Similarity=0.083 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015182 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 194 (411)
Q Consensus 115 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (411)
..+..+++.|++.|+++.+|+.+..... . . ..+...+.... .-
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~-------------~----------~---~~v~~ai~~l~-----------~~ 248 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLP-------------N----------L---NTLYSAIQVLK-----------VK 248 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCC-------------c----------c---hhHHHHHHHhC-----------CC
Confidence 4578999999999999999997631000 0 0 00111221111 11
Q ss_pred EEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCC
Q 015182 195 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 274 (411)
Q Consensus 195 ~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~ 274 (411)
+|.|.....++.++++..+++++ ..++||..-... ...+. .....+..++++|++++|+||..
T Consensus 249 RIGHG~~~~~d~~l~~~l~~~~I--~lEvCPtSN~~~-----------~~v~~----~~~HPi~~l~~~Gv~v~InTDDp 311 (362)
T PTZ00124 249 RIGHGIRVAESQELIDMVKEKDI--LLEVCPISNVLL-----------NNAKS----MDTHPIRKLYDAGVKVSVNSDDP 311 (362)
T ss_pred ccccccccCCCHHHHHHHHHcCC--eEEECCcchhhh-----------hcCCc----hhhHHHHHHHHCCCcEEEeCCCc
Confidence 34554432134567788877774 678899643221 11111 12356777888999999999963
Q ss_pred CCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 275 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 275 p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
... +. .+..-+.. ....+++.+++.++ +.|+.+.-.+
T Consensus 312 ~~~----------------~t-----~l~~Ey~~~~~~~gls~~~l~~l-~~nai~asF~ 349 (362)
T PTZ00124 312 GMF----------------LT-----NINDDYEELYTHLNFTLADFMKM-NEWALEKSFL 349 (362)
T ss_pred ccc----------------CC-----ChhHHHHHHHHHcCCCHHHHHHH-HHHHHHHhcC
Confidence 221 11 11111222 23568999888877 6667666555
|
|
| >PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.074 Score=48.28 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=95.2
Q ss_pred chHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 82 NASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 82 ~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
..+++.+.+ +.|+.|+|++..... ....++...+.+++.|.++|++|.+|+.......
T Consensus 86 ~~~~l~~~~~~~g~~Gv~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~------------------ 144 (273)
T PF04909_consen 86 AVEELERALQELGFRGVKLHPDLGG---FDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPD------------------ 144 (273)
T ss_dssp HHHHHHHHHHTTTESEEEEESSETT---CCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHH------------------
T ss_pred HHHHHHHhccccceeeeEecCCCCc---cccccHHHHHHHHHHHHhhccceeeeccccchhh------------------
Confidence 455666655 689999998775432 2222333334999999999999999976110000
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-HHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-SSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~-~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
..........+.+++.+. ++.++.+.|+... ..-.+.++.+++ ..++.++++-....
T Consensus 145 -----~~~~~~~~~~~~~~~~~~------P~l~ii~~H~G~~~~~~~~~~~l~~~-~~nvy~d~s~~~~~---------- 202 (273)
T PF04909_consen 145 -----APSDPADPEELEELLERF------PDLRIILAHLGGPFPWWEEALRLLDR-FPNVYVDLSGIPPF---------- 202 (273)
T ss_dssp -----HHHHHHHHHHHTTHHHHS------TTSEEEESGGGTTHHHHHHHHHHHHH-HTTEEEECHSHHSS----------
T ss_pred -----hhHHHHHHHHHHHHHHHh------cCCeEEEecCcccchhHHHHHHHHHh-CCcccccccccccc----------
Confidence 000111223334455553 4899999998753 012233444332 23567665432100
Q ss_pred cceEEcCCCCChhhHHHHHHHHhc-CC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE 317 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~-G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 317 (411)
....+ .......+...++. |. .+.+|||. |+..... .............++.+
T Consensus 203 --~~~~~---~~~~~~~l~~~~~~~g~drilfGSD~-P~~~~~~-------------------~~~~~~~~~~~~~l~~~ 257 (273)
T PF04909_consen 203 --WYFWP---PSFDRPFLRRAVDEFGPDRILFGSDY-PHPDGAS-------------------PYEYIWEAYFLDDLSEE 257 (273)
T ss_dssp --EEEET---THHCHHHHHHHHHHHTGGGEEEE--T-TSSTHHH-------------------HHHHHHHHHHHHHSSHH
T ss_pred --cccCc---ccccHHHHHHHHHHhCCceEEecCCC-CCCCccc-------------------cHHHHHHhhhccCCCHH
Confidence 01111 11223344444433 43 56899995 6543211 11111111111117999
Q ss_pred HHHHHHhHhHHHHhCC
Q 015182 318 QLASWWSERPAKLAGQ 333 (411)
Q Consensus 318 ~al~~~T~n~A~~lg~ 333 (411)
+.-+.+..|+++++++
T Consensus 258 ~~~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 258 EREKILYDNARRLYGL 273 (273)
T ss_dssp HHHHHHTHHHHHHHTC
T ss_pred HHHHHHhHhHHHHcCc
Confidence 9999999999999985
|
The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. |
| >COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.78 Score=41.28 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCcc
Q 015182 113 NASHIKEGLSVLARYKRPLLVHAEMEK 139 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g~~v~~H~~~~~ 139 (411)
..+.+++.++..+++|+++.++.....
T Consensus 122 ~a~~~r~~~~rL~~~gl~fdl~~~~~q 148 (279)
T COG3618 122 EAPAWRANVERLAKLGLHFDLQVDPHQ 148 (279)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEeChhh
Confidence 347899999999999999999876643
|
|
| >PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.14 Score=48.25 Aligned_cols=118 Identities=22% Similarity=0.231 Sum_probs=63.0
Q ss_pred CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHH
Q 015182 93 GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172 (411)
Q Consensus 93 g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~ 172 (411)
++.||-+. +... ..+......+++.|++.|+++.+|+.+..... .
T Consensus 164 ~vvG~dl~-g~E~-----~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~-----------------------------~ 208 (331)
T PF00962_consen 164 GVVGFDLA-GDED-----GGPPLKFAPAFRKAREAGLKLTVHAGETGGPE-----------------------------H 208 (331)
T ss_dssp TEEEEEEE-SSTT-----STTGGGHHHHHHHHHHTT-EEEEEESSSSTHH-----------------------------H
T ss_pred eEEEEEec-CCcc-----cCchHHHHHHHhhhcccceeecceecccCCcc-----------------------------c
Confidence 67777652 2211 12334488899999999999999997643211 1
Q ss_pred HHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChh
Q 015182 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
+..++... +. -+|.|.....++.++++..++++ |..++||..-..... + + + .
T Consensus 209 ~~~ai~~l----------~~-~RIgHG~~~~~~p~l~~~~~~~~--I~iEvcptSN~~~~~-~----------~---~-~ 260 (331)
T PF00962_consen 209 IRDAILLL----------GA-DRIGHGVRLIKDPELLELLAERQ--IPIEVCPTSNVQLGA-V----------P---S-Y 260 (331)
T ss_dssp HHHHHHTS----------T--SEEEE-GGGGGSHHHHHHHHHTT---EEEE-HHHHHHTTS-S----------S---T-G
T ss_pred ccchhhhc----------cc-eeecchhhhhhhhHHHHHHHHhC--CCeeeCCCcCcccce-e----------e---e-c
Confidence 22223221 21 14667553213456777777766 578899964322110 0 1 1 1
Q ss_pred hHHHHHHHHhcCCccEEcCCC
Q 015182 253 NKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~ 273 (411)
....+..+++.|++++|+||.
T Consensus 261 ~~hP~~~~~~~gv~v~i~TDd 281 (331)
T PF00962_consen 261 EEHPLRKLLDAGVPVSINTDD 281 (331)
T ss_dssp GG-CHHHHHHTT-EEEE--BS
T ss_pred chhHHHHHHHcCCceeccCCC
Confidence 234566778889999999996
|
5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A .... |
| >cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.06 Score=50.87 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhCC--CcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 113 NASHIKEGLSVLARYK--RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g--~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
+.+.+..+++.|++.| +++.+|+.+..... ..+. ..+..++.+.-
T Consensus 177 ~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~--------------------~~~~----~~v~~al~lg~--------- 223 (345)
T cd01321 177 PLLDFLPQLLWFPKQCAEIPFFFHAGETNGDG--------------------TETD----ENLVDALLLNT--------- 223 (345)
T ss_pred CHHHHHHHHHHHHHhCCCCceEeecCCCcCCC--------------------CCCh----hHHHHHHHhCC---------
Confidence 5678889999999999 99999997642100 0000 01333332211
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
-+|.|.....++.++++.+++++ |..++||..-... +..+. .....+..++++|++++|+
T Consensus 224 ---~RIGHG~~~~~dp~ll~~l~~~~--I~lEvCPtSN~~~-----------~~v~~----~~~HPl~~ll~~Gv~vtin 283 (345)
T cd01321 224 ---KRIGHGFALPKHPLLMDLVKKKN--IAIEVCPISNQVL-----------GLVSD----LRNHPAAALLARGVPVVIS 283 (345)
T ss_pred ---CcCccccccCcCHHHHHHHHHcC--CeEEECcchhhhh-----------ccccc----hhhChHHHHHHCCCeEEEe
Confidence 12445442213457788888776 5778899642221 11121 1234566778899999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcC---CCHHHHHHHHhHhHHHHhCC
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG---VTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---l~~~~al~~~T~n~A~~lg~ 333 (411)
||..... +...+..-+ +......+ ++.+++.+ ++.|+.+.-.+
T Consensus 284 TDDp~~f----------------~t~~l~~Ey---~~~~~~~g~~~l~~~~l~~-l~~nsi~~sF~ 329 (345)
T cd01321 284 SDDPGFW----------------GAKGLSHDF---YQAFMGLAPADAGLRGLKQ-LAENSIRYSAL 329 (345)
T ss_pred CCCcchh----------------CCCCchHHH---HHHHHHhccCCCCHHHHHH-HHHHHHHHHCC
Confidence 9963221 110111111 11122345 99988654 46777777666
|
|
| >cd00443 ADA_AMPD Adenosine/AMP deaminase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.095 Score=48.74 Aligned_cols=142 Identities=16% Similarity=0.093 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHhCC-CcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 015182 113 NASHIKEGLSVLARYK-RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 191 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g-~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~ 191 (411)
+...+...++.|++.| +++.+|+.+..... .+..++...
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~~-----------------------------~v~~~~~~~----------- 190 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNRE-----------------------------ELLQALLLL----------- 190 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCChH-----------------------------HHHHHHHhc-----------
Confidence 5678899999999999 99999998642110 122333321
Q ss_pred ceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcC
Q 015182 192 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271 (411)
Q Consensus 192 ~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~s 271 (411)
.-++.|.....++.++++.++++++ ..++||..-.... ..+.+ ....+..++++|++++++|
T Consensus 191 -~~RIgHg~~~~~~p~~~~~l~~~~i--~ie~CP~SN~~~~-----------~~~~~----~~hP~~~~~~~G~~v~i~T 252 (305)
T cd00443 191 -PDRIGHGIFLLKHPELIYLVKLRNI--PIEVCPTSNVVLG-----------TVQSY----EKHPFMRFFKAGLPVSLST 252 (305)
T ss_pred -cceeeceEecCCCHHHHHHHHHcCC--EEEECcchhhhhc-----------CCCCh----hhChHHHHHHCCCeEEEeC
Confidence 1234554432123356777777764 6678886422110 11111 1234556688899999999
Q ss_pred CCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 272 DHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 272 D~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
|...... . .+. ..+.......+++.+++.+++ .|+-+.-.+
T Consensus 253 Dd~~~~~----------------~-~l~---~E~~~~~~~~~l~~~~l~~l~-~nsi~~sf~ 293 (305)
T cd00443 253 DDPGIFG----------------T-SLS---EEYSLAAKTFGLTFEDLCELN-RNSVLSSFA 293 (305)
T ss_pred CCCcccC----------------C-ChH---HHHHHHHHHcCcCHHHHHHHH-HHHHHHhcC
Confidence 9642211 1 111 111112234579998876665 666665554
|
Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway. |
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.3 Score=40.78 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=97.5
Q ss_pred hHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccccc
Q 015182 83 ASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 161 (411)
Q Consensus 83 ~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (411)
..++.+.++ .|..++|+.-... + ...++..+..+++.|.++|++|.+|........ .... .
T Consensus 115 ~~E~er~v~~~gf~g~~l~p~~~---~-~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~-------------~~~~-~ 176 (293)
T COG2159 115 AEELERRVRELGFVGVKLHPVAQ---G-FYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA-------------GLEK-G 176 (293)
T ss_pred HHHHHHHHHhcCceEEEeccccc---C-CCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc-------------cccc-C
Confidence 345555554 6899999843322 1 133556689999999999999999987643210 0000 0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC--ChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS--DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 162 ~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~--~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
.+.|-. +-.++.+. +..++.+.|+. .+ --.+.+..+.. ..++..+++-..
T Consensus 177 ~~~p~~--------~~~va~~f------P~l~IVl~H~G~~~p-~~~~a~~~a~~-~~nvy~d~s~~~------------ 228 (293)
T COG2159 177 HSDPLY--------LDDVARKF------PELKIVLGHMGEDYP-WELEAIELAYA-HPNVYLDTSGVR------------ 228 (293)
T ss_pred CCCchH--------HHHHHHHC------CCCcEEEEecCCCCc-hhHHHHHHHHh-CCCceeeeeccc------------
Confidence 123322 22345543 47889999997 44 34444444422 334544433210
Q ss_pred cceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE 317 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 317 (411)
.++.++ .+++.+.+ + -.+.+|||. |.....+ .+......+++.+
T Consensus 229 --~~~~~~--------~~~~~~~~~~~dkilFGSD~-P~~~~~~-----------------------~l~~~~~l~l~~e 274 (293)
T COG2159 229 --PKYFAP--------PLLEFLKELGPDKILFGSDY-PAIHPEV-----------------------WLAELDELGLSEE 274 (293)
T ss_pred --cccCCh--------HHHHHHHhcccCeEEecCCC-CCcCHHH-----------------------HHHHHHhcCCCHH
Confidence 111111 33444444 2 246889994 5532111 1223456678888
Q ss_pred HHHHHHhHhHHHHhCC
Q 015182 318 QLASWWSERPAKLAGQ 333 (411)
Q Consensus 318 ~al~~~T~n~A~~lg~ 333 (411)
..-+..-.|++|++++
T Consensus 275 ~k~kiL~~NA~rll~l 290 (293)
T COG2159 275 VKEKILGENAARLLGL 290 (293)
T ss_pred HHHHHHHHhHHHHhCc
Confidence 8899999999999998
|
|
| >COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.36 Score=45.19 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
....+....+++.++..|+.+.+||.+....+ .+...+....-
T Consensus 181 ~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~-----------------------------~i~~al~~~~~-------- 223 (345)
T COG1816 181 GYPPELFVSLFKLARDNGLKLTIHAGEAGGPE-----------------------------SIRDALDLLGA-------- 223 (345)
T ss_pred cCCHHHHHHHHHHHHHcCceEEEeccccCCcH-----------------------------HHHHHHHHhch--------
Confidence 45678999999999999999999998533211 12222322211
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
. +|.|.-..-++.++++...+.++ ..++||-.-.. ....+.+ ....+.++++.|+.++++
T Consensus 224 --~-rI~HGi~~~~d~~L~~~l~~~qI--~levCP~SNi~-----------~~~v~~~----~~hPf~~~~d~Gv~VsLn 283 (345)
T COG1816 224 --E-RIGHGIRAIEDPELLYRLAERQI--PLEVCPLSNIQ-----------LGVVPSL----AKHPFKKLFDAGVKVSLN 283 (345)
T ss_pred --h-hhccccccccCHHHHHHHHHhCC--eeEECCcchhh-----------cccccch----hhCcHHHHHHcCCceEEc
Confidence 0 24454321134477777777765 56788853210 1112222 234566778889999999
Q ss_pred CCCCC
Q 015182 271 SDHSP 275 (411)
Q Consensus 271 sD~~p 275 (411)
||..+
T Consensus 284 TDdp~ 288 (345)
T COG1816 284 TDDPL 288 (345)
T ss_pred CCChh
Confidence 99743
|
|
| >TIGR01431 adm_rel adenosine deaminase-related growth factor | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.3 Score=43.72 Aligned_cols=62 Identities=21% Similarity=0.110 Sum_probs=37.6
Q ss_pred EEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCC
Q 015182 195 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 195 ~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
+|.|.....+..++++..++++ |..|+||..-.. .+..+.++ ...+..++.+|++++|+||.
T Consensus 351 RIGHG~~l~~~P~l~~~vke~~--I~lEvCP~SN~~-----------l~~v~~~~----~HPl~~lla~Gvpv~InSDD 412 (479)
T TIGR01431 351 RIGHGFALVKHPLVLQMLKERN--IAVEVNPISNQV-----------LQLVADLR----NHPCAYLFADNYPMVISSDD 412 (479)
T ss_pred cccCcccccCCHHHHHHHHHhC--CeEEECccchhh-----------hcccCCcc----cChHHHHHHCCCcEEEeCCC
Confidence 3556543213457788888776 577899963211 11222222 23455678889999999996
|
Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates. |
| >COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.02 E-value=8.6 Score=34.34 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCc
Q 015182 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 192 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~ 192 (411)
+-+.|..+++.|++.+++|..|.++.+. ..+.++.+++++.|+. ..
T Consensus 143 ~n~vl~~a~elA~dvdc~vqLHtes~~~------------------------------~~~~~i~~~ak~~G~~----~~ 188 (285)
T COG1831 143 SNEVLEYAMELAKDVDCAVQLHTESLDE------------------------------ETYEEIAEMAKEAGIK----PY 188 (285)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCCh------------------------------HHHHHHHHHHHHhCCC----cc
Confidence 3467788889999999999999987542 2356667777776321 12
Q ss_pred eEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCC
Q 015182 193 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD 272 (411)
Q Consensus 193 ~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD 272 (411)
++ +-|-+.+ ++....+.|+..+ + | ..++.+.+++..|....+=||
T Consensus 189 ~V-VkHha~p-----~v~~~~~~Gi~pS--V----------------------~-----asr~~v~~a~~~g~~FmmETD 233 (285)
T COG1831 189 RV-VKHHAPP-----LVLKCEEVGIFPS--V----------------------P-----ASRKNVEDAAELGPRFMMETD 233 (285)
T ss_pred ee-EeecCCc-----cchhhhhcCcCCc--c----------------------c-----ccHHHHHHHHhcCCceEeecc
Confidence 33 4455554 1122222343111 1 0 113466677888988888899
Q ss_pred CCCCChhhhhcccCCccccCCCCchhhhHHH-HHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 273 HSPTVPELKLLDEGNFLKAWGGISSLQFVLP-VTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 273 ~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
..--.. -|..+-+.. .++ .......+..++.+.+-+..-.||++++|+
T Consensus 234 yIDDp~------------RpgavL~Pk-tVPrr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~ 282 (285)
T COG1831 234 YIDDPR------------RPGAVLGPK-TVPRRTREILEKGDLTEEDVYRIHVENPERVYGI 282 (285)
T ss_pred cccCcc------------cCCCcCCcc-chhHHHHHHHHhcCCcHHHHHHHHHhCHHHHhCc
Confidence 631110 011111111 122 222233444588999999999999999987
|
|
| >KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.24 E-value=3.3 Score=39.28 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCce
Q 015182 114 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 193 (411)
Q Consensus 114 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 193 (411)
......++..+.+.|+...+||.+... . + .-++.++++..-
T Consensus 226 ~~~f~~vl~~~~~~gi~~t~HaGE~~~-~-----------~----------------~~v~~~LD~l~~----------- 266 (399)
T KOG1097|consen 226 LSLFLEVLAKAPAKGIHLTFHAGETNG-G-----------A----------------SVVKNALDLLGT----------- 266 (399)
T ss_pred hhhhHHHHHhhhhcCCcEEEEccccCC-C-----------h----------------HHHHHHHHhhCC-----------
Confidence 345666777777799999999987421 0 0 013334442221
Q ss_pred EEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCC
Q 015182 194 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 194 ~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
-+|.|.....++-.++...+..+ |..++||..-.. .+....+| ...+..++++|++++|+||.
T Consensus 267 ~RIGHG~~l~~dp~L~~~~k~~n--I~lEiCP~SN~v-----------l~~v~d~r----nhp~~~~~~~~vP~vI~sDD 329 (399)
T KOG1097|consen 267 ERIGHGYFLTKDPELINLLKSRN--IALEICPISNQV-----------LGLVSDLR----NHPVARLLAAGVPVVINSDD 329 (399)
T ss_pred ccccCceeccCCHHHHHHHHhcC--ceEEEccchhhh-----------eecccccc----ccHHHHHHhCCCCEEEeCCC
Confidence 23556542103446788887765 567889964211 12222232 23455667889999999996
|
|
| >COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.48 E-value=0.47 Score=40.59 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=27.8
Q ss_pred eeecccccCC---CCCCccCChHHHHHHHHcCCceeEecCC
Q 015182 4 LIDVHAHLDD---PGRTEWEGFPSGTKAAAAGGITTLIDMP 41 (411)
Q Consensus 4 lID~H~H~~~---~~~~~~~~~~~~~~~a~~~GvTtv~d~~ 41 (411)
+||+|+|+-- .|..+.|+...-.+.|...|||+++..+
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 6999999841 2333444455667889999999999865
|
|
| >PRK00912 ribonuclease P protein component 3; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=4.8 Score=35.84 Aligned_cols=68 Identities=12% Similarity=0.001 Sum_probs=45.4
Q ss_pred HHHHHHh-cCCccEEcCCC-CCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 256 KLWEALM-DGHIDMLSSDH-SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 256 ~l~~~l~-~G~~~~~~sD~-~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.+++..+ .|++++++||. .|.. +. .+.....+....|++.++++...+.+|.+++..
T Consensus 158 ~~~~~~~~~g~piiisSdAh~~~~-----------------l~----~~~~~~~l~~~~Gl~~~~~~~~~~~~~~~i~~~ 216 (237)
T PRK00912 158 DNLALARKYDFPLVLTSGAMSCYD-----------------LR----SPREMIALAELFGMEEDEALKALSYYPESIIKK 216 (237)
T ss_pred HHHHHHHhcCCCEEEeCCCCcccc-----------------cC----CHHHHHHHHHHcCCCHHHHHHHHHHhHHHHHHh
Confidence 3444443 49999999993 2211 11 122233445678999999999999999999988
Q ss_pred --CCCCcccccCC
Q 015182 334 --VSKGAIAIGNH 344 (411)
Q Consensus 334 --~~~G~I~~G~~ 344 (411)
.+.+.|..|..
T Consensus 217 ~~~~~~~~~~~~~ 229 (237)
T PRK00912 217 NRNRKNYVIEGVE 229 (237)
T ss_pred hccCCCcccccEE
Confidence 44566666643
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=83.99 E-value=20 Score=35.69 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecC-CCccch-HHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP-ENAYNA-SALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~g~~~ik~ 99 (411)
..-.+.++..|+..++-+- . ..+...++...+..+. ...+.........+ .+.+.. +..+++.+.|+..|.+
T Consensus 100 ~~fv~~a~~~Gidi~RIfd-~----lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I 174 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFD-A----LNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI 174 (499)
T ss_pred HHHHHHHHHcCCCEEEEEe-c----CChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4456788999999987653 1 1334555554444332 22232221111122 122222 3344566789988754
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHhC---CCcEEEecCCcc
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLARY---KRPLLVHAEMEK 139 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~---g~~v~~H~~~~~ 139 (411)
-+. .| ..+++...++++..++. ++++.+|++++.
T Consensus 175 -kDt---aG--ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~ 211 (499)
T PRK12330 175 -KDM---AA--LLKPQPAYDIVKGIKEACGEDTRINLHCHSTT 211 (499)
T ss_pred -CCC---cc--CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCC
Confidence 221 23 56888999999888765 699999999875
|
|
| >PRK06361 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.51 E-value=11 Score=32.66 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=55.6
Q ss_pred EEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHH-hcCCccEEcCC
Q 015182 194 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL-MDGHIDMLSSD 272 (411)
Q Consensus 194 ~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l-~~G~~~~~~sD 272 (411)
-.+.|.... ..++++.++++|+ ..+++... + . + . ....+++.. +.|++++++||
T Consensus 115 dvlaHpd~~--~~~~~~~~~~~~~--~lEin~~~-----------~-~----~----~-~~~~~l~~a~~~gi~vv~~SD 169 (212)
T PRK06361 115 DILAHPGLI--TEEEAELAAENGV--FLEITARK-----------G-H----S----L-TNGHVARIAREAGAPLVINTD 169 (212)
T ss_pred cEecCcchh--hHHHHHHHHHcCe--EEEEECCC-----------C-c----c----c-chHHHHHHHHHhCCcEEEECC
Confidence 346687654 3466788877774 44544210 0 0 0 0 011233333 34999999999
Q ss_pred CCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 273 HSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 273 ~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.. .... + . .+..+.......+++.++++.+.+.||++++++
T Consensus 170 aH--~~~d-------~----------~-~~~~~~~i~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 170 TH--APSD-------L----------I-TYEFARKVALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred CC--CHHH-------H----------H-HHHHHHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 42 2111 1 0 122233345677899999999999999999874
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.00 E-value=25 Score=33.59 Aligned_cols=107 Identities=18% Similarity=0.111 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeecC-CCcc-chHHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLVP-ENAY-NASALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~g~~~ik~ 99 (411)
..-...++..|++.++.+-. ..+...++...+..+. +..+........+| .+.+ .++-.+++.+.|+++|.+
T Consensus 101 e~Fv~ka~~nGidvfRiFDA-----lND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIci 175 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDA-----LNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICI 175 (472)
T ss_pred HHHHHHHHhcCCcEEEechh-----ccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEe
Confidence 45667889999999987641 1234556555444432 23333322222222 1111 234556777889988654
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHH-hCCCcEEEecCCccc
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLA-RYKRPLLVHAEMEKG 140 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~-~~g~~v~~H~~~~~~ 140 (411)
= +- .| .+++....++++..+ +.+++|.+|++..+.
T Consensus 176 K-Dm---aG--lltP~~ayelVk~iK~~~~~pv~lHtH~TsG 211 (472)
T COG5016 176 K-DM---AG--LLTPYEAYELVKAIKKELPVPVELHTHATSG 211 (472)
T ss_pred e-cc---cc--cCChHHHHHHHHHHHHhcCCeeEEecccccc
Confidence 1 11 23 567777777777766 578999999987653
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.41 E-value=45 Score=32.94 Aligned_cols=107 Identities=16% Similarity=0.104 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceEEEEEeeecCC-Ccc-chHHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPE-NAY-NASALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~g~~~ik~ 99 (411)
....+.+...|+..++-+- . ..+.+.++...+..+... .+.........+. +.+ -++..+++.+.|+..|.+
T Consensus 108 ~~fv~~a~~~Gidi~Rifd-~----lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~I 182 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIFD-A----LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICI 182 (468)
T ss_pred HHHHHHHHHCCCCEEEEcc-c----CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 3456888999999998654 1 134555655555444322 2222221111221 111 123445566789988755
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCccc
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKG 140 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~ 140 (411)
.+. .| ..+++.+.++++..++ .++++.+|++++..
T Consensus 183 -kDt---aG--~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~G 218 (468)
T PRK12581 183 -KDM---AG--ILTPKAAKELVSGIKAMTNLPLIVHTHATSG 218 (468)
T ss_pred -CCC---CC--CcCHHHHHHHHHHHHhccCCeEEEEeCCCCc
Confidence 222 23 5678888888888775 46999999998653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 411 | ||||
| 3hm7_A | 448 | Crystal Structure Of Allantoinase From Bacillus Hal | 2e-62 | ||
| 3e74_A | 473 | Crystal Structure Of E. Coli Allantoinase With Iron | 1e-56 | ||
| 3d6n_A | 422 | Crystal Structure Of Aquifex Dihydroorotase Activat | 9e-26 | ||
| 1xrf_A | 467 | The Crystal Structure Of A Novel, Latent Dihydrooro | 9e-26 | ||
| 1yny_A | 461 | Molecular Structure Of D-Hydantoinase From A Bacill | 1e-24 | ||
| 1gkr_A | 458 | L-Hydantoinase (Dihydropyrimidinase) From Arthrobac | 1e-24 | ||
| 3mpg_A | 428 | Dihydroorotase From Bacillus Anthracis Length = 428 | 1e-23 | ||
| 3sfw_A | 461 | Crystal Structure Of Dihydropyrimidinase From Brevi | 5e-22 | ||
| 1k1d_A | 460 | Crystal Structure Of D-Hydantoinase Length = 460 | 7e-20 | ||
| 1nfg_A | 457 | Structure Of D-Hydantoinase Length = 457 | 6e-19 | ||
| 3gri_A | 424 | The Crystal Structure Of A Dihydroorotase From Stap | 7e-17 | ||
| 3dc8_A | 490 | Crystal Structure Of Dihydropyrimidinase From Sinor | 1e-16 | ||
| 2z00_A | 426 | Crystal Structure Of Dihydroorotase From Thermus Th | 3e-16 | ||
| 1gkp_A | 458 | D-Hydantoinase (Dihydropyrimidinase) From Thermus S | 1e-14 | ||
| 2gwn_A | 452 | The Structure Of Putative Dihydroorotase From Porph | 1e-13 | ||
| 2fty_A | 559 | Crystal Structure Of Dihydropyrimidinase From Sacch | 6e-12 | ||
| 4b91_A | 484 | Crystal Structure Of Truncated Human Crmp-5 Length | 2e-11 | ||
| 4b90_A | 586 | Crystal Structure Of Wt Human Crmp-5 Length = 586 | 2e-11 | ||
| 2ftw_A | 521 | Crystal Structure Of Dihydropyrimidinase From Dicty | 5e-09 | ||
| 2vr2_A | 541 | Human Dihydropyrimidinase Length = 541 | 1e-08 | ||
| 1kcx_A | 518 | X-Ray Structure Of Nysgrc Target T-45 Length = 518 | 1e-08 | ||
| 2gse_A | 501 | Crystal Structure Of Human Dihydropyrimidinease-Lik | 5e-06 |
| >pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans C-125 Length = 448 | Back alignment and structure |
|
| >pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions At The Metal Center Length = 473 | Back alignment and structure |
|
| >pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase Length = 422 | Back alignment and structure |
|
| >pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase From Aquifex Aeolicus At 1.7 A Resolution Length = 467 | Back alignment and structure |
|
| >pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp. Ar9: Evidence For Mercury Inhibition Length = 461 | Back alignment and structure |
|
| >pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter Aurescens Length = 458 | Back alignment and structure |
|
| >pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis Length = 428 | Back alignment and structure |
|
| >pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Brevibacillus Agri Nchu1002 Length = 461 | Back alignment and structure |
|
| >pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase Length = 460 | Back alignment and structure |
|
| >pdb|1NFG|A Chain A, Structure Of D-Hydantoinase Length = 457 | Back alignment and structure |
|
| >pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From Staphylococcus Aureus Length = 424 | Back alignment and structure |
|
| >pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From Sinorhizobium Meliloti Length = 490 | Back alignment and structure |
|
| >pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus Thermophilus Length = 426 | Back alignment and structure |
|
| >pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In Space Group C2221 Length = 458 | Back alignment and structure |
|
| >pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From Porphyromonas Gingivalis Length = 452 | Back alignment and structure |
|
| >pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From Saccharomyces Kluyveri Length = 559 | Back alignment and structure |
|
| >pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Length = 484 | Back alignment and structure |
|
| >pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5 Length = 586 | Back alignment and structure |
|
| >pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Dictyostelium Discoideum Length = 521 | Back alignment and structure |
|
| >pdb|2VR2|A Chain A, Human Dihydropyrimidinase Length = 541 | Back alignment and structure |
|
| >pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45 Length = 518 | Back alignment and structure |
|
| >pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2 Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448 | Back alignment and structure |
|---|
Score = 475 bits (1226), Expect = e-167
Identities = 152/402 (37%), Positives = 215/402 (53%), Gaps = 24/402 (5%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG++DVH H ++PGRTEWEGF SG+K+ AAGG+TT DMPLNS+P TI+ E L K
Sbjct: 58 FPGMVDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQL 117
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A ++ VD FWGGLVP N L+ L + GV+G K+FM G +DF ++ + +G
Sbjct: 118 ANEKSLVDYRFWGGLVPG---NIDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKG 174
Query: 121 LSVLARYKRPLLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 177
+ +A L VHAE E + Y + RP E A+ +L
Sbjct: 175 MKKIAALGSILAVHAESNEMVNALTTIAIEEQRL----TVKDYSEARPIVSELEAVERIL 230
Query: 178 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237
A+ T +HI H+S L + +AK G +++VETCPHYL FS +E +
Sbjct: 231 RFAQLT-------CCPIHICHVSSR-KVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAE 282
Query: 238 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 297
KCAPP+R+ E LW+ LM G ID++SSDHSP++P++K + WGGI+
Sbjct: 283 IGYLAKCAPPLRERQEVEDLWDGLMAGEIDLISSDHSPSLPQMK--TGKTIFEVWGGIAG 340
Query: 298 LQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAE 355
Q L V + G K + L Q+ S PAK G KG I +G A + +
Sbjct: 341 CQNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNES 400
Query: 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
+ L+ ++ +HP IS Y+G+R GKV TI +G VY++
Sbjct: 401 YTLNASD-LYYRHP-ISPYVGQRFRGKVKHTICQGKHVYQDH 440
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473 | Back alignment and structure |
|---|
Score = 472 bits (1218), Expect = e-166
Identities = 148/411 (36%), Positives = 215/411 (52%), Gaps = 28/411 (6%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG++D H H+ +PGR+ WEG+ +GT+AAA GGITT+I+MPLN P+T+ +++LK DA
Sbjct: 72 SPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDA 131
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASH 116
A+ ++ +D GGLV N L L GV+G K F+ G NDF N
Sbjct: 132 AKGKLTIDAAQLGGLVSY---NIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQ 188
Query: 117 IKEGLSVLARYKRPLLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173
+G L +P+LVH E K E + Y+ +RP E AI
Sbjct: 189 FFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRV----TAHDYVASRPVFTEVEAI 244
Query: 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233
R +L +AK G LH+ H+S ++ + A+ G IT E+CPHY +
Sbjct: 245 RRVLYLAKVA-------GCRLHVCHVSSP-EGVEEVTRARQEGQDITCESCPHYFVLDTD 296
Query: 234 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWG 293
+ + T KC+PPIRD N++ +WE L +G ID L SDHSP PE+K GN +KAWG
Sbjct: 297 QFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWG 353
Query: 294 GISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP 352
GI+ LQ + V + +K G++L + A + G KG IA G AD V +P
Sbjct: 354 GIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQP 413
Query: 353 EAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA 403
+ + L ND + +H +S Y+GR + ++ TI RG+++Y P A
Sbjct: 414 NSSYVLTNDD-LEYRHK-VSPYVGRTIGARITKTILRGDVIYDIEQGFPVA 462
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458 | Back alignment and structure |
|---|
Score = 416 bits (1072), Expect = e-144
Identities = 117/415 (28%), Positives = 196/415 (47%), Gaps = 25/415 (6%)
Query: 1 MPGLIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 59
MPG++D H H+ D + F +++AA GGITT+I+MP + P T + + K
Sbjct: 53 MPGVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKK 111
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
A +R+ VD +GG VP N + + +AG +G KS M S F + + E
Sbjct: 112 QAGQRLKVDFALYGGGVPGNL---PEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFE 168
Query: 120 GLSVLARYKRPLLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176
+A ++VHAE E + ++ +K + Y ++P E AI+
Sbjct: 169 IFQEIAACGSVIVVHAENETIIQALQKQIKAAGGK----DMAAYEASQPVFQENEAIQRA 224
Query: 177 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236
L + K+ G L ++H+S+ ++L+ +A++ G + E+ P YL + ++
Sbjct: 225 LLLQKEA-------GCRLIVLHVSNPDG-VELIHQAQSEGQDVHCESGPQYLNITTDDAE 276
Query: 237 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296
K APP+R A +LWE L +G ID L SDH E K + KA G
Sbjct: 277 RIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGAL 336
Query: 297 SLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEA 354
L+ LP+ + G G ++LE+L E+PAKL G KG + +G+ ADL++ + +
Sbjct: 337 GLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDI 396
Query: 355 EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 408
+ ++D H S + G ++G + T+ RG +V ++G G +
Sbjct: 397 DTKVDASQ-FRSLHK-YSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFV 449
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457 | Back alignment and structure |
|---|
Score = 386 bits (994), Expect = e-132
Identities = 108/409 (26%), Positives = 178/409 (43%), Gaps = 30/409 (7%)
Query: 1 MPGLIDVHAHLDDPG--RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
PG IDVH H++ + F + T AAA GG TT++D E +
Sbjct: 50 FPGGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQD-RGHSLAEAVAKWD 108
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 118
A + +D G+ ++ LE L + G+ K FM G M + +
Sbjct: 109 GMAGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFMAYRG---MNMIDDVTLL 165
Query: 119 EGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
+ L + ++VHAE + ++ V E T + + +RPP E A
Sbjct: 166 KTLDKAVKTGSLVMVHAENGDAADYLRDKFVA-EGKT----APIYHALSRPPRVEAEATA 220
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
L +A+ A ++IVH++ SL+ +M AK+ G ETC HYL + E+
Sbjct: 221 RALALAEIV-------NAPIYIVHVT-CEESLEEVMRAKSRGVRALAETCTHYLYLTKED 272
Query: 235 IPDGD---TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLK 290
+ D ++ PP R + + LW AL +G + +SSDH K +F
Sbjct: 273 LERPDFEGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRA 332
Query: 291 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVV 349
G ++ L + + + ++L Q + RPAK+ G KG IA+G+ AD+V+
Sbjct: 333 IPNGAPGVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVL 392
Query: 350 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
W+PEAE ++ +H S+Y G ++ G + RG ++ EG+
Sbjct: 393 WDPEAEMVIEQTA-MHNAMD-YSSYEGHKVKGVPKTVLLRGKVIVDEGS 439
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461 | Back alignment and structure |
|---|
Score = 371 bits (956), Expect = e-126
Identities = 112/411 (27%), Positives = 189/411 (45%), Gaps = 32/411 (7%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG ID H HLD P G + F +GTKAAA GG T+++D L S +
Sbjct: 51 LPGGIDPHTHLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTS-KGESLHSAIATWH 109
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHI 117
+ A + +D GF + N + LE+++N G+ LK FM M + +
Sbjct: 110 EKARGKAVIDYGFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKN---VLMADDETL 166
Query: 118 KEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173
+ L + VHAE ++ +++ + E +T + TRPP E A
Sbjct: 167 FKTLIRAKELGALVQVHAENGDVLDYLTKQALA-EGNT----DPIYHAYTRPPEAEGEAT 221
Query: 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233
+ + A L++VH+S + ++ + EA+ G ++ ETCP YL
Sbjct: 222 GRAIALTALA-------DAQLYVVHVS-CADAVRRIAEAREKGWNVYGETCPQYLVLDIT 273
Query: 234 EIPDGD---TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFL 289
+ D ++ +PP+R+ N++ LW AL +G + + SDH P K L +F
Sbjct: 274 ALEKPDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFT 333
Query: 290 KAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADL 347
K G ++ + + +S G RK ++L Q S + AKL G KG IA+G+ AD+
Sbjct: 334 KIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADI 393
Query: 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
V+++P + + + HM + + G ++ G V++ +SRG V +
Sbjct: 394 VLFDPTVQRTISVET-HHMNVD-YNPFEGMQVHGDVISVLSRGAFVVRNKQ 442
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-124
Identities = 105/402 (26%), Positives = 168/402 (41%), Gaps = 29/402 (7%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG ID H +PG T S ++AA AGG+T+ +DMP N++P T E L K
Sbjct: 59 FPGCIDDQVHFREPGLTHKATIASESRAAVAGGVTSFMDMP-NTNPPTTMWERLLEKRQI 117
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+ + GF+ G +N ++ + V GLK F+ S N + +
Sbjct: 118 GADTAWANYGFFFGGTNDNI---DEIKRVDKHLVPGLKLFLGSSTGN----MLVDNKETL 170
Query: 121 LSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176
+ + H E + E + + LD + R + E
Sbjct: 171 EKIFGECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLI---RSEEACYRSSAEA 227
Query: 177 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLL-MEAKTNGDSITVETCPHYLAFSAEEI 235
+ +A+ A LHI+HLS L L + T IT E C H+L FS +
Sbjct: 228 VELAERM-------NARLHILHLSTEKE-LSLFRNDIPTAQKRITSEVCVHHLWFSDTDY 279
Query: 236 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 295
R K P I+ +++E L A+ +G ID++++DH+P + K EG+ L+A G
Sbjct: 280 GRLGNRIKWNPAIKKESDREALRAAVRNGRIDIIATDHAPHLLREK---EGSCLQAASGG 336
Query: 296 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 355
+Q L + ++E++ S + PA L +G I G +ADLV+ +P +
Sbjct: 337 PLVQHSLLALLELCNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSP 396
Query: 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
+ D+ + S + G S V T G L Y +G
Sbjct: 397 HTVSADN-ILSLC-GWSPFEGFTFSHSVAYTFVNGCLAYAKG 436
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 | Back alignment and structure |
|---|
Score = 363 bits (935), Expect = e-123
Identities = 100/409 (24%), Positives = 172/409 (42%), Gaps = 30/409 (7%)
Query: 1 MPGLIDVHAHLDDPGRTEW--EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
PG ID H H+ P + + +G+KAA GG TT I+M + + E +L
Sbjct: 51 FPGFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCP-SRNDDALEGYQLWK 109
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 118
AE Y D F + + L ++ G+ K F+ F + +
Sbjct: 110 SKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMY 166
Query: 119 EGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
+ L + + H E + + ++ + E T + +RP + E
Sbjct: 167 QTLRLAKELGVIVTAHCENAELVGRLQQKLLS-EGKT----GPEWHEPSRPEAVEAEGTA 221
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
T + T GA ++VHLS +LD M AK G I +E+ +
Sbjct: 222 RFATFLETT-------GATGYVVHLS-CKPALDAAMAAKARGVPIYIESVIPHFLLDKTY 273
Query: 235 IPDGDT---RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 291
G ++ +PP+RD N++ LW+AL G ID + +DH P E KLL + F
Sbjct: 274 AERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAI 333
Query: 292 WGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVV 349
GI +++ + + ++YG + + + + S + AKL G KG IA+G+ ADLVV
Sbjct: 334 PNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVV 393
Query: 350 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
++P+ + H+ + + + G + G+ RG + ++G
Sbjct: 394 YDPQYRGTISVKT-QHVNND-YNGFEGFEIDGRPSVVTVRGKVAVRDGQ 440
|
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490 | Back alignment and structure |
|---|
Score = 364 bits (936), Expect = e-123
Identities = 104/422 (24%), Positives = 175/422 (41%), Gaps = 34/422 (8%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
MPG ID H HL+ P G + F SGT+AA AGG T ++D L S P E L +
Sbjct: 49 MPGGIDPHTHLEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPS-PGQSLLEALTMWD 107
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI 117
+ + + D F + + +E ++ + G+ K FM G M + +
Sbjct: 108 NKSTRA-NCDYSFHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGA---LMVDDDEM 163
Query: 118 KEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173
A LVHAE + + + + E ++ + +RP E A
Sbjct: 164 FSSFQRCAALGALPLVHAENGDVVAQLQAKLLA-EGNS----GPEAHAYSRPAEVEGEAA 218
Query: 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233
+ +A G ++IVH S + + + A+ G + E +L
Sbjct: 219 NRAIMIADMA-------GCPVYIVHTS-CEQAHEAIRRARAKGMRVFGEPLIQHLTLDET 270
Query: 234 EIPDGD----TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 289
E D D R +PP R+ +++ LW L G + ++++DH E K G+F
Sbjct: 271 EYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFT 330
Query: 290 KAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADL 347
+ G L+ +P+ W+YG G +T+ + + S AK+ KGAI +G ADL
Sbjct: 331 RIPNGTGGLEDRMPMLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADL 390
Query: 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGS 406
VVW+P+ + + + G+ ++G T++RG + +EG G
Sbjct: 391 VVWDPKRSKTISAKT-QQSAID-YNVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGE 448
Query: 407 PI 408
+
Sbjct: 449 FV 450
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-121
Identities = 94/408 (23%), Positives = 158/408 (38%), Gaps = 25/408 (6%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG ID H H+ P G + F GTKAA +GG T +ID + ++ E +
Sbjct: 82 LPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSL-IEAFETWR 140
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI 117
A+ ++ D + + ++ L+ + GV K FM D M +
Sbjct: 141 SWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYK---DLYMVTDLEL 197
Query: 118 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 177
E S VHAE K T + RP + E A +
Sbjct: 198 YEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGIT-GPEGHELCRPEAVEAEATLRAI 256
Query: 178 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237
T+A L+IVH+ + S+ ++ +A+ +G + E L +
Sbjct: 257 TIASAV-------NCPLYIVHVM-SKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWN 308
Query: 238 GD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
+ PP+R D + + L L + + +D+ K L + +F K
Sbjct: 309 KEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIP 368
Query: 293 GGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVW 350
G++ ++ + V W G G + + + S AK+ KG IA+G+ AD+V+W
Sbjct: 369 NGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIW 428
Query: 351 EPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+P+ + H + + G G L TISRG +VY+ G
Sbjct: 429 DPKGTRTISAKT-HHQAVN-FNIFEGMVCHGVPLVTISRGKVVYEAGV 474
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501 | Back alignment and structure |
|---|
Score = 354 bits (911), Expect = e-119
Identities = 97/412 (23%), Positives = 159/412 (38%), Gaps = 33/412 (8%)
Query: 1 MPGLIDVHAHLD--DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG IDVH D G T + F GTKAA AGG T +ID + +P T
Sbjct: 77 IPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVP-EPGTSLLAAFDQWR 135
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHI 117
+ A+ + D + + +EAL+ + GV +M D I
Sbjct: 136 EWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFK---DRFQLTDCQI 192
Query: 118 KEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173
E LSV+ VHAE + + +R + L ++ +RP E A+
Sbjct: 193 YEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGIT-----GPEGHVLSRPEEVEAEAV 247
Query: 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233
+T+A T L+I + + SS +++ +A+ G + E L
Sbjct: 248 NRAITIANQT-------NCPLYITKVM-SKSSAEVIAQARKKGTVVYGEPITASLGTDGS 299
Query: 234 EIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 288
+ F +PP+ D + L L G + + S H K + + NF
Sbjct: 300 HYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNF 359
Query: 289 LKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHAD 346
G + + + V W G + Q + S AK+ KG IA+G+ AD
Sbjct: 360 TLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDAD 419
Query: 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
LV+W+P++ + + + + G G L IS+G +V ++G
Sbjct: 420 LVIWDPDSVKTISAKT-HNSSLE-YNIFEGMECRGSPLVVISQGKIVLEDGT 469
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521 | Back alignment and structure |
|---|
Score = 352 bits (905), Expect = e-118
Identities = 88/411 (21%), Positives = 155/411 (37%), Gaps = 31/411 (7%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 58
+PG ID H H P G + F GT+AA AGG T +ID + E
Sbjct: 59 LPGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIP-TRGQSLLEAYDQWK 117
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHI 117
A++++ D + + + +E L+ GV K FM M +
Sbjct: 118 KWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSF---MVTDQEM 174
Query: 118 KEGLSVLARYKRPLLVHAE---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
VHAE M ++ + T + +RP + E A
Sbjct: 175 YHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGIT----GPEGHELSRPEALEAEATN 230
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234
+ +A ++IVH+ + + D++ + + G + E L
Sbjct: 231 RAIVIADSV-------CTPVYIVHVQ-SIGAADVICKHRKEGVRVYGEPIAAGLGVDGSH 282
Query: 235 IPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 289
+ + D F PPIR D K L + L G +D + +D+ + K + + +F
Sbjct: 283 MWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFT 342
Query: 290 KAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADL 347
K G++ ++ + + W G +T Q S A++ KG I +G D+
Sbjct: 343 KIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDI 402
Query: 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
V+W+P + D H + + G +++G + TI GN+V+ +
Sbjct: 403 VIWDPNQSKTISKDT-HHHAVD-FNIFEGIKVTGIAVTTIVAGNIVWSDNK 451
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559 | Back alignment and structure |
|---|
Score = 317 bits (813), Expect = e-103
Identities = 100/482 (20%), Positives = 172/482 (35%), Gaps = 92/482 (19%)
Query: 1 MPGLIDVHAHLDDPGRTEWEG---FPSGTKAAAAGGITTLIDMPLN----SDPSTISTET 53
PG ID H H+D+P + + T++A AGG TT++ PS ++
Sbjct: 54 TPGGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESV 113
Query: 54 LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALE--------ALLNAGVLGLKSFMCPSG 105
+ +E+ +Y D G L + A E A + GV +K FM G
Sbjct: 114 KLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG 173
Query: 106 INDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYL 161
+ + I + + ++HAE ++ E + +
Sbjct: 174 L----QISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEE-----QGLTDAYYHG 224
Query: 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITV 221
+RP E A +T+A + VH+S + + +++ +A+T G +
Sbjct: 225 VSRPSIVEGEATNRAITLATTM-------DTPILFVHVS-SPQAAEVIKQAQTKGLKVYA 276
Query: 222 ETCPHYLAFSAE------------------------------EIPDGDTRFKCAPPIRDA 251
ETCP Y S + +++ C+PPIR
Sbjct: 277 ETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPE 336
Query: 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELK-------------LLDEGNFLKAWGGISSL 298
++ +W+ + +G ++ SDH K G F G+ +
Sbjct: 337 GTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGV 396
Query: 299 QFVLPVTWSYGRKYG--VTLEQLASWWSERPAKLAG-QVSKGAIAIGN-HADLVVWEPEA 354
+P+ + YG G ++ +L PAK+ G KG+I G ADLV+W P+
Sbjct: 397 CTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDD 456
Query: 355 EFELDNDHPV-------HMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGS 406
+ N P + + G + TI +G +VYKEG A G
Sbjct: 457 SKKEYNSKPKLITNKLMEHNCD-YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGK 515
Query: 407 PI 408
+
Sbjct: 516 YL 517
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 2e-71
Identities = 103/419 (24%), Positives = 180/419 (42%), Gaps = 68/419 (16%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG +DVH HL +PG E +GTKAAA GG TT+ MP N+ P S E +
Sbjct: 51 SPGFVDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPMP-NTRPVPDSVEHFEALQKL 109
Query: 61 AEKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPM 111
+ V V G + + AL+ G +D +
Sbjct: 110 IDDNAQVRVLPYASITTRQLGKELVD-------FPALVKEGAFAFT--------DDGVGV 154
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL--------DTRSYSTYLKT 163
AS + EG+ A+ + ++ H E D++L RS +
Sbjct: 155 QTASMMYEGMIEAAKVNKAIVAHCE------------DNSLIYGGAMHEGKRSKELGIPG 202
Query: 164 RPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 222
P E I R++L +A+ G H H+ H+S S + ++ +AK G +T E
Sbjct: 203 IPNICESVQIARDVL-LAEAA-------GCHYHVCHVSTKES-VRVIRDAKRAGIHVTAE 253
Query: 223 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 282
PH+L + ++IP + +K PP+R ++E L E L+DG ID +++DH+P + K
Sbjct: 254 VTPHHLLLTEDDIPGNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKA 313
Query: 283 LDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAI 341
KA GI + P+ +++ + TL+QL + + +P + + G +
Sbjct: 314 QP---MEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFN-LEYGTLKE 369
Query: 342 GNHADLVVWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEG 397
+ADL + + ++E E+ + S + ++G ++ G + T+ G + ++
Sbjct: 370 NGYADLTIIDLDSEQEIKGE-----DFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGD 423
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 2e-71
Identities = 110/420 (26%), Positives = 181/420 (43%), Gaps = 68/420 (16%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PGL+DVH HL +PG E +GT AAA GG TT+ MP N+ P E ++ +
Sbjct: 52 APGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNR 110
Query: 61 AEKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPM 111
+++ +V+V G + + E L G +D +
Sbjct: 111 IKEKAHVNVLPYGAITVRQAGSEMTD-------FETLKELGAFAFT--------DDGVGV 155
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL--------DTRSYSTYLKT 163
+AS + + A+ ++ H E ++TL S L
Sbjct: 156 QDASMMLAAMKRAAKLNMAVVAHCE------------ENTLINKGCVHEGKFSEKHGLNG 203
Query: 164 RPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 222
P E I R++L +A+ H H+ H+S S + ++ +AK G +T E
Sbjct: 204 IPSVCESVHIARDIL-LAEAA-------DCHYHVCHVSTKGS-VRVIRDAKRAGIKVTAE 254
Query: 223 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 282
PH+L ++IP D FK PP+R + E L E L+DG IDM+++DH+P E K
Sbjct: 255 VTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKA 314
Query: 283 LDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAI 341
+A GI+ + P+ ++ +K +TLEQL + +E+PA G + G +
Sbjct: 315 QG---IERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKE 370
Query: 342 GNHADLVVWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEGN 398
G AD+ + + E E E+D S + G + G + TI G + +++ +
Sbjct: 371 GRTADITIIDLEQEEEIDPT-----TFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 3e-71
Identities = 116/416 (27%), Positives = 191/416 (45%), Gaps = 67/416 (16%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG ID+H HL DPG+T E SG++ A AGG TT++ MP N++P +T + +
Sbjct: 99 CPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQK 157
Query: 61 AEKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPM 111
++ V G G + + +L AG + +D P+
Sbjct: 158 SKSVGLCRVLPTGTITKGRKGKEIAD-------FYSLKEAGCVAFT--------DDGSPV 202
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL-------DTRSYSTYLKTR 164
++S +++ L + ++ P++ H E DD L S L +R
Sbjct: 203 MDSSVMRKALELASQLGVPIMDHCE------------DDKLAYGVINEGEVSALLGLSSR 250
Query: 165 PPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 223
P EE I R+ + +A+ T G H+HI H+S S L+++ K G IT E
Sbjct: 251 APEAEEIQIARDGI-LAQRT-------GGHVHIQHVSTKLS-LEIIEFFKEKGVKITCEV 301
Query: 224 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 283
P++L F+ E+ + + PP+R ++ L E + G ID ++DH+P K L
Sbjct: 302 NPNHLLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL 361
Query: 284 DEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGN 343
A GI LQ LP RK ++L++L ++ PA++ G V G + +G+
Sbjct: 362 ----VEFAMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGS 416
Query: 344 HADLVVWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKE 396
AD+ +++P E+ L+ + + S S G+ L GKV+ TI G +VYK+
Sbjct: 417 PADITIFDPNKEWILNEE-----TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 1e-67
Identities = 113/419 (26%), Positives = 174/419 (41%), Gaps = 63/419 (15%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG +D+HAHL +PG E SG AA GG T L+ MP N+ P + E ++ +
Sbjct: 48 APGFLDLHAHLREPGEEVKEDLFSGLLAAVRGGYTDLVSMP-NTKPPVDTPEAVRALKEK 106
Query: 61 AEKRIYVDV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPM 111
A+ + G + L AG + L +D
Sbjct: 107 AKALGLARLHPAAALTEKQEGKTLTP-------AGLLREAGAVLLT--------DDGRTN 151
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR------SYSTY--LKT 163
+A + GL + A P+ VHAE D L + L
Sbjct: 152 EDAGVLAAGLLMAAPLGLPVAVHAE------------DAGLRRNGVMNDGPLADLLGLPG 199
Query: 164 RPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 222
PP E A I R+L + R LH+ HLS L+L+ EAK G +T E
Sbjct: 200 NPPEAEAARIARDLEVLRYALRR--SPATPRLHVQHLSTKRG-LELVREAKRAGLPVTAE 256
Query: 223 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 282
PH+L + E + D FK APP+R ++E L E L+DG +D +++DH+P K
Sbjct: 257 ATPHHLTLTEEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAEKE 316
Query: 283 LDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAI 341
D L+A GI SL+ P+ ++ K G L++L +++ P ++ G + +
Sbjct: 317 KD---LLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLG-LPPLHLEE 372
Query: 342 GNHADLVVWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEG 397
G A LV+ P+ E +D S + + G L G + T+ G +V++
Sbjct: 373 GAEASLVLLSPK-ERPVDPS-----AFASKARYSPWAGWVLGGWPVLTLVAGRIVHEAL 425
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 3e-22
Identities = 52/402 (12%), Positives = 111/402 (27%), Gaps = 86/402 (21%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAA---GGITTLIDMPLNSDPSTISTETLKLK 57
PG ID H HL G + A + G+T+++ + +D + E+L K
Sbjct: 61 CPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAK 119
Query: 58 VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI 117
A + G + ++E + + + + A +
Sbjct: 120 TRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAI----IDRVIGVKCAISDHRSAAPDV 175
Query: 118 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 177
++ A + L+ K + D + A++ +
Sbjct: 176 YHLANMAAESRVGGLLG---GKPGVTVFHMGD-------------------SKKALQPIY 213
Query: 178 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237
+ ++ + L H++ + +E G +I + +
Sbjct: 214 DLLENCDV----PISKLLPTHVNRNVPLFEQALEFARKGGTIDITS-------------- 255
Query: 238 GDTRFKCAPPIRDA-ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296
P+ A + + + + S + + G++
Sbjct: 256 -----SIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQP-----FFDDEGNLTHIGVA 305
Query: 297 SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEF 356
+ +L + Y ++ + A KG I GN ADL+V PE
Sbjct: 306 GFETLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPELR- 364
Query: 357 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+ +RG L+ K+G
Sbjct: 365 --------------------------IEQVYARGKLMVKDGK 380
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* Length = 570 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 1e-18
Identities = 69/389 (17%), Positives = 121/389 (31%), Gaps = 68/389 (17%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETL 54
G ID H H +P A A GITTL + +T +
Sbjct: 130 TAGGIDTHVHFINP---------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNI 180
Query: 55 KLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNA 114
+ + + E + ++VG G + + + + ++AG GLK D+ T A
Sbjct: 181 EKMLKSTE-GLPINVGILGKG---HGSSIAPIMEQIDAGAAGLKIHE------DWGATPA 230
Query: 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
I L+V + +H++ + +DTL + E A
Sbjct: 231 -SIDRSLTVADEADVQVAIHSD----TLNEAGFLEDTLRAINGRV---IHSFHVEGAGGG 282
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE- 233
+ G + ++ + + E +
Sbjct: 283 HAPDIMAMA-------GHPNVLPSSTNP---------TRPFTVNTIDEHLDMLMVCHHLK 326
Query: 234 -EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
IP+ D F + + E + L G I M+S+D L+ W
Sbjct: 327 QNIPE-DVAFADSRIRPETIAAEDILHDL--GIISMMSTDALAMGR-----AGEMVLRTW 378
Query: 293 GGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVW 350
++ L++ S ++ PA G G+I G ADLV+W
Sbjct: 379 QTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLW 438
Query: 351 EPE-----AEFELDNDHPVH--MKHPSIS 372
EP+ A+ + + + PS S
Sbjct: 439 EPKFFGVKADRVIKGGIIAYAQIGDPSAS 467
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 4e-18
Identities = 49/418 (11%), Positives = 99/418 (23%), Gaps = 101/418 (24%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS----TETLKL 56
PGL+D H H+ + +A GG+TT+I P K
Sbjct: 60 TPGLLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAG---SPHFPGRPKDAAGTKA 116
Query: 57 KVDAAEKRIYVDV-----GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPM 111
K Y G ++ E + GV + I +
Sbjct: 117 LAITLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKEGVWIVGEVG-LGTIKNPED 175
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171
+ ++ + +H DD + T+ P
Sbjct: 176 -----AAPMVEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIKTKPDVVSHINGGP--TAI 228
Query: 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231
+++E+ + +T + IV + + + A G + F
Sbjct: 229 SVQEVDRIMDET-------DFAMEIVQCGNPKIADYVARRAAEKG-------QLGRVIFG 274
Query: 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKA 291
+ + G + ++
Sbjct: 275 NDAPSGTG--------------------LIPLGILRN----------MCQIA-------- 296
Query: 292 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE 351
+ E + + G ++ G IA G ADL++
Sbjct: 297 ------------------SMSDIDPEVAVCMATGNSTAVYG-LNTGVIAPGKEADLII-- 335
Query: 352 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 409
+D + + G + + G V + + P A + +
Sbjct: 336 ------MDTPLGSVAEDAMGAIAAGDIPG--ISVVLIDGEAVVTKSRNTPPAKRAAKI 385
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 6e-17
Identities = 69/412 (16%), Positives = 118/412 (28%), Gaps = 100/412 (24%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
G ID H H + ++ + G+TT+ID + I +
Sbjct: 53 SAGWIDDHVHCFEKMALYYD---YPDEIGVKKGVTTVIDAG-TTGAENIHEFYDLAQQAK 108
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNA--------GVLGLKSFMCPSGINDFPMT 112
V++ WG + + + S ++A L V+G+K+ M + I D +T
Sbjct: 109 TNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGIT 168
Query: 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
K+ PL+VH + PP +E
Sbjct: 169 PLELAKQIQQENQEI--PLMVHIG--------------------------SAPPHLDE-- 198
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 232
I L+ K G I+ + D +A G + + +F+
Sbjct: 199 ILALM--EKGDVLTHCFNGKENGILDQATD-KIKDFAWQAYNKG--VVFDIGHGTDSFNF 253
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
AL +G D +
Sbjct: 254 HVA----------------------ETALREG-----------MKAASISTDIYIRNREN 280
Query: 293 GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP 352
G + L T R G ++ ++ PA+ KG + IG ADL ++
Sbjct: 281 GPVYD----LATTMEKLRVVGYDWPEIIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTI 336
Query: 353 EAEFELDNDHPVHMKHPSISAYLGRRLSG----KVLATISRGNLVYKEGNHA 400
+AE + D G + + TI G + EG+H
Sbjct: 337 QAEEKTLTD------------SNGLTRVAKEQIRPIKTIIGGQIYDNEGHHH 376
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* Length = 569 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 5e-16
Identities = 74/372 (19%), Positives = 117/372 (31%), Gaps = 79/372 (21%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETL 54
G ID H H P A A G+TT+I T +T L
Sbjct: 129 TAGGIDTHIHFIS---------PQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNL 179
Query: 55 KLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNA 114
K + AAE+ +++GF NA N ++L + AG +G K D+ T
Sbjct: 180 KWMLRAAEE-YSMNLGFLA---KGNASNDASLADQIEAGAIGFKIHE------DWG-TTP 228
Query: 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
S I L V +Y + +H DTL+ EA
Sbjct: 229 SAINHALDVADKYDVQVAIH--------------TDTLN----------------EAGCV 258
Query: 175 ELLTVAKDTR------TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 228
E A R T+G G I+ ++ + L T ++ E +
Sbjct: 259 EDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAS-TNPTIPFTVNTEAEHMDM 317
Query: 229 AFSAE----EIPDGDTRFKCAPPIRD-AANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 283
I + D +F + A ++ L + G + SSD
Sbjct: 318 LMVCHHKDKSIKE-DVQFADSRIRPQTIAAEDTLHD---MGAFSITSSDSQA-----MGR 368
Query: 284 DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVS-KGAIAI 341
+ W + +++ S ++ PA G G++ +
Sbjct: 369 VGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEV 428
Query: 342 GNHADLVVWEPE 353
G ADLV+W P
Sbjct: 429 GKVADLVLWSPA 440
|
| >1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme, temperature depende structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C ... Length = 567 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 6e-11
Identities = 70/364 (19%), Positives = 116/364 (31%), Gaps = 63/364 (17%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID---MPLNSDPSTISTE--TLK 55
G ID H H P + E A G+TT++ P +T T
Sbjct: 127 TAGGIDTHIHWICPQQAEE---------ALVSGVTTMVGGGTGPAAGTHATTCTPGPWYI 177
Query: 56 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 115
++ A + V++G G N AL + AGV+GLK +
Sbjct: 178 SRMLQAADSLPVNIGLLGKG---NVSQPDALREQVAAGVIGLKIHEDWGATP-------A 227
Query: 116 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175
I L+V + +H++ + +DTL T +
Sbjct: 228 AIDCALTVADEMDIQVALHSD----TLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPD 283
Query: 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235
++T P L +++D ++ C H AE++
Sbjct: 284 IITACAH-----PNILPSSTNPTLPYTLNTIDEHLDMLM--------VCHHLDPDIAEDV 330
Query: 236 PDGDTRFKCAPPIRDAANKEKLWEALMD-GHIDMLSSDHSP--TVPELKL--LDEGNFLK 290
++R + + L D G + SSD V E+ L + +K
Sbjct: 331 AFAESRIRRETIAA--------EDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMK 382
Query: 291 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVV 349
G L G +++ + ++ PA G G+I +G ADLVV
Sbjct: 383 VQRGA------LAEE--TGDNDNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVV 434
Query: 350 WEPE 353
W P
Sbjct: 435 WSPA 438
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 7e-10
Identities = 57/410 (13%), Positives = 113/410 (27%), Gaps = 91/410 (22%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
PG +D+H H+ G + ++ A G+TTL+D + + + ++
Sbjct: 70 SPGWVDLHVHIWHGGT---DISIRPSECGAERGVTTLVDAGSAGEANF--HGFREYIIEP 124
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+ +RI A LN G +GL + + D + I E
Sbjct: 125 SRERIK---------------------AFLNLGSIGLVACNRVPELRDIKDIDLDRILEC 163
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
+ + + L V A SW ++ +A
Sbjct: 164 YAENSEHIVGLKVRAS-------------------------HVITGSWGVTPVKLGKKIA 198
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240
K + VH+ + + D ++E GD +T H + D
Sbjct: 199 KIL-------KVPMM-VHVGEPPALYDEVLEILGPGDVVT-----HCFNGKSGSSIMEDE 245
Query: 241 RFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFL-------KAW 292
+G +D+ S + + L
Sbjct: 246 DLFNL-----------AERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHG 294
Query: 293 GGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP 352
++ + L T S + E + + PA + + + +G AD V++
Sbjct: 295 HSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDL 354
Query: 353 EAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 402
D + + +RL + + + A
Sbjct: 355 V-------DADLEATDSNGDVSRLKRL-FEPRYAVIGAEAIAASRYIPRA 396
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* Length = 347 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 8e-10
Identities = 52/336 (15%), Positives = 98/336 (29%), Gaps = 60/336 (17%)
Query: 6 DVHAHLDDPGRTEWEGFP-SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 64
D H HL R +G + I MP N P + E A +R
Sbjct: 14 DWHLHL----R---DGDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVE----AAVAYRQR 61
Query: 65 I------YVDVGFWGGLVPENAYNASALEALLNAG-VLGLKSFMCPS-GINDFPMTNASH 116
I D ++ + + LE N G K + + + +T+
Sbjct: 62 ILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDA 121
Query: 117 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176
I L + + PLLVH E+ E ++ +
Sbjct: 122 IMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIE--------------------SVM 161
Query: 177 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236
+ + + H++ + D + + + P +L F+ +
Sbjct: 162 EPLRQR------LTALKVVFEHITTKDA-ADYVRDGNER---LAATITPQHLMFNRNHML 211
Query: 237 DGDTR--FKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWG 293
G R C P ++ +++ L E + G L +D +P K G
Sbjct: 212 VGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCA----- 266
Query: 294 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK 329
G + L + + L+ ++ S +
Sbjct: 267 GCFNAPTALGSYATVFEEMN-ALQHFEAFCSVNGPQ 301
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 73/427 (17%), Positives = 122/427 (28%), Gaps = 117/427 (27%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGT--------------------------KAAAAGGI 34
PG +D H+H+ G E + + A AGG+
Sbjct: 56 FPGFVDAHSHI---GLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGV 112
Query: 35 TTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGV 94
T+++ +P +++P +K + E+ I V GL G
Sbjct: 113 TSVMIVPGSANPVGGQGSVIKFRSIIVEECI---VKDPAGLKM-------------AFGE 156
Query: 95 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154
+ + M A I++ + + Y + + ++G E +
Sbjct: 157 NPKRVYGERKQTPSTRMGTAGVIRDYFTKVKNYMKKKELA--QKEGKEFTETDLKMEVGE 214
Query: 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT 214
+ R + I + +A++ G +L I H ++A +L E K
Sbjct: 215 MVLRKKIPARMHAHRADDILTAIRIAEEF-------GFNLVIEHGTEAYKISKVLAEKKI 267
Query: 215 NGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHS 274
P R K KL + G + L DH
Sbjct: 268 P----------------VVVGPLLTFRTKLELKDLTMETIAKLLKD---GVLIALMCDHP 308
Query: 275 PTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV 334
E + + +YG E L + PAK+ G
Sbjct: 309 VIPLEFATVQAATAM---------------------RYGAKEEDLLKILTVNPAKILGLE 347
Query: 335 SK-GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393
+ G+I G ADLVVW + HP MK V G V
Sbjct: 348 DRIGSIEPGKDADLVVW---------SGHPFDMKS-------------VVERVYIDGVEV 385
Query: 394 YKEGNHA 400
++ H
Sbjct: 386 FRREGHH 392
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 68/483 (14%), Positives = 121/483 (25%), Gaps = 141/483 (29%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID------------------MPLN 43
PG ID H H D + G+TT++ + L
Sbjct: 74 PGFIDSHTHDD--NYLLKHR---DMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLL 128
Query: 44 SDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASA------------------ 85
+ + ++A +V + A+
Sbjct: 129 DEGGSFRFARFSDYLEALRAAPPA--VNAACMVGHSTLRAAVMPDLRREATADEIQAMQA 186
Query: 86 -LEALLNAGVLGLKSFMCPSGINDFPMTNASH--IKEGLSVLARYKRPLLVHAEMEKGSE 142
+ L +G +G +G P +AS I E L + H E
Sbjct: 187 LADDALASGAIG-----ISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDE---- 237
Query: 143 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA 202
A+ E + ++ + I H
Sbjct: 238 -----------------------GEHIVQALEETFRIGREL-------DVPVVISHHKVM 267
Query: 203 SSS--------LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANK 254
L L+ A + D ++++ P Y+A S D
Sbjct: 268 GKLNFGRSKETLALIEAAMASQD-VSLDAYP-YVAGSTMLKQDRVLLAGRTLITWCKPYP 325
Query: 255 EKLWEALMDG------HIDMLSSDHSPTVPELKLLDEGNFLKAWG---------GISSLQ 299
E L + + + P ++DE + + G+ +
Sbjct: 326 ELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDE 385
Query: 300 FVLPVTWS--------YGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVW 350
P W Y R G+ LE + A G +G + G +ADLVV+
Sbjct: 386 RPHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERGQVQPGYYADLVVF 445
Query: 351 EPE-----AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACG 405
+P A FE + + G V+++ + G
Sbjct: 446 DPATVADSATFEHPTERAAGIHS-----------------VYVNGAAVWEDQSFTGQHAG 488
Query: 406 SPI 408
+
Sbjct: 489 RVL 491
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 77/402 (19%), Positives = 124/402 (30%), Gaps = 77/402 (19%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM-----------------PLNS 44
PG IDVH H D + + + GITT++ L
Sbjct: 60 PGFIDVHGHDDLMFVEKPDLRWK-----TSQGITTVVVGNCGVSAAPAPLPGNTAAALAL 114
Query: 45 DPSTISTETLKLKVDAAEKR-IYVDVGFWGGLVPENAYNASA------------------ 85
T + A + + ++V LV +A
Sbjct: 115 LGETPLFADVPAYFAALDAQRPMINVAA---LVGHANLRLAAMRDPQAAPTAAEQQAMQD 171
Query: 86 -LEALLNAGVLGLKSFMCPSGINDFPMTNAS--HIKEGLSVLARYKRPLLVHAEMEKGS- 141
L+A L AG +G + + P A ++ V A +R H E
Sbjct: 172 MLQAALEAGAVGFSTGLAY-----QPGAVAQAAELEGLARVAAERRRLHTSHIRNEADGV 226
Query: 142 ----ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV 197
E + + T S + P +W R L R G ++
Sbjct: 227 EAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGR--SRATLANIDRAREQGVEVALDIY-- 282
Query: 198 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKL 257
SS L+ E D I + + S E + D R+ C AA +
Sbjct: 283 --PYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKT--TAARRLAP 338
Query: 258 WEALMDGHID-----MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 312
A+ + + + D + WG S VL Y R+
Sbjct: 339 AGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWG---SFTRVLG---RYVREA 392
Query: 313 GV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 353
+ TLEQ + + PA++ G +G + G AD+VV++P+
Sbjct: 393 RLMTLEQAVARMTALPARVFGFAERGVLQPGAWADVVVFDPD 434
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 411 | |||
| 3dc8_A | 490 | Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K | 100.0 | |
| 3e74_A | 473 | Allantoinase; (beta/alpha)8-barrel domain, small b | 100.0 | |
| 3sfw_A | 461 | Dihydropyrimidinase; hydrolase, zinc binding; HET: | 100.0 | |
| 3gri_A | 424 | Dihydroorotase, dhoase; hydrolase, IDP00795, metal | 100.0 | |
| 3hm7_A | 448 | Allantoinase; metallo-dependent hydrolase, protein | 100.0 | |
| 2fty_A | 559 | Dihydropyrimidinase; alpha/beta barrel, beta-sandw | 100.0 | |
| 3mpg_A | 428 | Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus | 100.0 | |
| 1gkp_A | 458 | Hydantoinase; hydrolase, dihydropyrimidinase, cycl | 100.0 | |
| 1gkr_A | 458 | Hydantoinase, non-ATP dependent L-selective hydant | 100.0 | |
| 2ftw_A | 521 | Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba | 100.0 | |
| 1nfg_A | 457 | D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 | 100.0 | |
| 3pnu_A | 359 | Dihydroorotase; TIM barrel, zinc binding, hydrolas | 100.0 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 100.0 | |
| 2vr2_A | 541 | Dihydropyrimidinase; hydantoinase, metal-binding, | 100.0 | |
| 2gwn_A | 452 | Dihydroorotase; zinc-binding prote structural geno | 100.0 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 100.0 | |
| 1xrt_A | 467 | Dihydroorotase, dhoase; amidohydrolase, metalloenz | 100.0 | |
| 2z26_A | 347 | Dihydroorotase, dhoase; TIM barrel, hydrolase; HET | 100.0 | |
| 3gip_A | 480 | N-acyl-D-glutamate deacylase; amidohydrolase famil | 100.0 | |
| 1rk6_A | 496 | D-aminoacylase; TIM barrel, beta barrel, insertion | 100.0 | |
| 2ics_A | 379 | Adenine deaminase; TIM barrel, binuclear zinc, ade | 99.97 | |
| 2paj_A | 492 | Putative cytosine/guanine deaminase; NYSGXRC, PSI- | 99.97 | |
| 2vun_A | 386 | Enamidase; nicotinate degradation, binuclear metal | 99.96 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 99.96 | |
| 1e9y_B | 569 | Urease subunit beta; hydrolase, dodecamer; HET: KC | 99.96 | |
| 4f0r_A | 447 | 5-methylthioadenosine/S-adenosylhomocysteine DEAM; | 99.96 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 99.96 | |
| 2ogj_A | 417 | Dihydroorotase; TIM barrel, binuclear zinc, imidaz | 99.96 | |
| 3h4u_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 99.96 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 99.96 | |
| 4dyk_A | 451 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 99.95 | |
| 3lnp_A | 468 | Amidohydrolase family protein OLEI01672_1_465; TIM | 99.95 | |
| 3be7_A | 408 | Zn-dependent arginine carboxypeptidase; unknown so | 99.95 | |
| 2p9b_A | 458 | Possible prolidase; protein structure initiative I | 99.95 | |
| 2ood_A | 475 | BLR3880 protein; PSI-II, PSI-2, guanine deaminase, | 99.95 | |
| 3ls9_A | 456 | Triazine hydrolase; atrazine chlorohydrolase TRZN; | 99.95 | |
| 4dzh_A | 472 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 99.95 | |
| 1ra0_A | 430 | Cytosine deaminase; alpha-beta barrel, hexamer, co | 99.95 | |
| 2qt3_A | 403 | N-isopropylammelide isopropyl amidohydrolase; N-is | 99.95 | |
| 2i9u_A | 439 | Cytosine/guanine deaminase related protein; protei | 99.94 | |
| 1onw_A | 390 | Isoaspartyl dipeptidase; amidohydrolase, hydrolase | 99.94 | |
| 4ac7_C | 570 | Urease subunit alpha; hydrolase, bacillus pasteuri | 99.94 | |
| 1p1m_A | 406 | Hypothetical protein TM0936; putative metal depend | 99.94 | |
| 4ubp_C | 570 | Protein (urease (chain C)); bacillus pasteurii, ni | 99.94 | |
| 2qs8_A | 418 | XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p | 99.93 | |
| 2q09_A | 416 | Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio | 99.93 | |
| 4aql_A | 476 | Guanine deaminase; hydrolase, purine metabolism; H | 99.93 | |
| 2bb0_A | 421 | Imidazolonepropionase; TIM barrel, hydrolase; 2.00 | 99.93 | |
| 3v7p_A | 427 | Amidohydrolase family protein; iron binding site, | 99.93 | |
| 2vhl_A | 396 | N-acetylglucosamine-6-phosphate deacetylase; N- ac | 99.92 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 99.92 | |
| 4f0l_A | 458 | Amidohydrolase; ssgcid, structural genomics, seatt | 99.92 | |
| 3mdu_A | 453 | N-formimino-L-glutamate iminohydrolase; amonohydra | 99.91 | |
| 2puz_A | 419 | Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino | 99.91 | |
| 3hpa_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 99.91 | |
| 2imr_A | 420 | Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, | 99.89 | |
| 3ooq_A | 396 | Amidohydrolase; structural genomics, protein struc | 99.88 | |
| 4gy7_A | 840 | Urease; JACK bean, hydrolase, ME binding, nickel; | 99.88 | |
| 1yrr_A | 382 | N-acetylglucosamine-6-phosphate deacetylase; (beta | 99.88 | |
| 1o12_A | 376 | N-acetylglucosamine-6-phosphate deacetylase; struc | 99.85 | |
| 3icj_A | 534 | Uncharacterized metal-dependent hydrolase; structu | 99.85 | |
| 3mtw_A | 403 | L-arginine carboxypeptidase CC2672; hydrolase; HET | 99.81 | |
| 3iv8_A | 381 | N-acetylglucosamine-6-phosphate deacetylase; IDP01 | 99.79 | |
| 4ep8_C | 566 | Urease subunit alpha; alpha-beta barrel, nickel me | 99.78 | |
| 3mkv_A | 426 | Putative amidohydrolase; sargasso SEA, structural | 99.69 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 99.4 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 99.23 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 99.07 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 99.05 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 98.92 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 98.83 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 98.82 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 98.82 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 98.8 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 98.79 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 98.74 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 98.74 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 98.63 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 98.58 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 98.54 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 98.51 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 98.51 | |
| 2ffi_A | 288 | 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; | 98.43 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 98.41 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 98.34 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 98.31 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 98.3 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 98.28 | |
| 4do7_A | 303 | Amidohydrolase 2; enzyme function initiative, EFI, | 98.11 | |
| 4d9a_A | 303 | 2-pyrone-4,6-dicarbaxylate hydrolase; structural g | 98.09 | |
| 2pgf_A | 371 | Adenosine deaminase; metallo-dependent hydrolase, | 98.07 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 98.03 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 97.97 | |
| 3iar_A | 367 | Adenosine deaminase; purine metabolism structural | 97.63 | |
| 3rys_A | 343 | Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 | 97.52 | |
| 3pao_A | 326 | Adenosine deaminase; structural genomics, PSI-2, p | 97.15 | |
| 3ij6_A | 312 | Uncharacterized metal-dependent hydrolase; structu | 97.14 | |
| 3e2v_A | 401 | 3'-5'-exonuclease; structural genomics, hydrolase, | 97.1 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 96.83 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 96.16 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 95.87 | |
| 2wm1_A | 336 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxy | 95.38 | |
| 4inf_A | 373 | Metal-dependent hydrolase; amidohydrolase, metal b | 94.9 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 93.3 | |
| 2a3l_A | 701 | AMP deaminase, AMPD; atampd, AT2G38280, adenosine | 92.58 | |
| 3qy7_A | 262 | Tyrosine-protein phosphatase YWQE; TIM barrel, pol | 92.14 | |
| 3lgd_A | 508 | Adenosine deaminase CECR1; TIM barrel, dimerizatio | 84.44 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 81.86 | |
| 2wje_A | 247 | CPS4B, tyrosine-protein phosphatase CPSB; capsule | 80.97 |
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-61 Score=475.43 Aligned_cols=391 Identities=25% Similarity=0.367 Sum_probs=342.7
Q ss_pred CCceeecccccCCCCC--CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~--~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|++.+++ .+++++.+++++++++||||+++|+ ++.|..+..+.++.+.+.+. +..+++.++..++..
T Consensus 49 ~PG~ID~H~H~~~~~~~~~~~e~~~~~~~aa~~~GvTtv~~~~-~~~p~~~~~~~~~~~~~~a~-~~~~d~~~~~~~~~~ 126 (490)
T 3dc8_A 49 MPGGIDPHTHLEMPFMGTYSSDDFESGTRAALAGGTTMVVDFA-LPSPGQSLLEALTMWDNKST-RANCDYSFHMAITWW 126 (490)
T ss_dssp EECEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-CCC-CCCHHHHHHHHHHHTT-TCSSEEEEEEECCSC
T ss_pred ecCEEeeccccCCCCCCCCCHHHHHHHHHHHHHcCEEeecccC-CCCCCcCHHHHHHHHHHHhh-cccceeeeEEEEecC
Confidence 6999999999998866 6889999999999999999999999 77777666677777766555 677899888877655
Q ss_pred CccchHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccch---hhhhhccCcCCc
Q 015182 79 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE---RHVKLEDDTLDT 154 (411)
Q Consensus 79 ~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~---~~~~~~~~~~~~ 154 (411)
+.+.+.++.++. +.|+.++|+|+++. +.+.+++++|.+++++|+++|+++.+|+++...+. ..+.. .+.
T Consensus 127 ~~~~l~el~~l~~~~G~~~~k~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~HaE~~~~i~~~~~~~~~----~g~ 199 (490)
T 3dc8_A 127 GEQVFNEMETIVKDKGINTFKHFMAYK---GALMVDDDEMFSSFQRCAALGALPLVHAENGDVVAQLQAKLLA----EGN 199 (490)
T ss_dssp SHHHHHHHHHHHHHSCCCEEEEESCST---TTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHH----TTC
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEecCC---CCccCCHHHHHHHHHHHHhcCCEEEEecCChHHHHHHHHHHHh----cCC
Confidence 545577888888 78999999999874 33457899999999999999999999999876543 22222 223
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
.+...+...+|..+|..++.+.+.+++.+ +.++|++|+++. +.+++++.+|++|+.+++++||||++++.++
T Consensus 200 ~~~~~~~~~rP~~~E~~av~r~i~la~~~-------g~~lhi~HvSt~-~~~~li~~ak~~G~~Vt~e~~ph~l~l~~~~ 271 (490)
T 3dc8_A 200 SGPEAHAYSRPAEVEGEAANRAIMIADMA-------GCPVYIVHTSCE-QAHEAIRRARAKGMRVFGEPLIQHLTLDETE 271 (490)
T ss_dssp CSHHHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEESSCCSH-HHHHHHHHHHHTTCCEEECCBHHHHHCCGGG
T ss_pred CCccccccCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHCCCeEEEEEchHHheeCHHH
Confidence 45566778999999999999999999887 899999999998 8999999999999999999999999999888
Q ss_pred cCCC----CcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-
Q 015182 235 IPDG----DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG- 309 (411)
Q Consensus 235 ~~~~----~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 309 (411)
+... +...+++||+|...++.+||++|.+|.+++++|||+|++...|..+.++|..+|+|++|++.+++.+++..
T Consensus 272 ~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~l~~G~id~i~sDh~p~~~~~K~~g~~~f~~~~~G~~gle~~l~~~~~~~v 351 (490)
T 3dc8_A 272 YFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGV 351 (490)
T ss_dssp GGCSCHHHHHHTCCSSCCCCGGGHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHT
T ss_pred hcCcCcccCCceEECCCCCChHHHHHHHHHHhcCCceEEECCCCCCCHHHhhccCCChhhCCCChHHHHHHHHHHHHHHH
Confidence 7765 67788999999999999999999999999999999999998887666789999999999999999998774
Q ss_pred HhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEE
Q 015182 310 RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATIS 388 (411)
Q Consensus 310 ~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~ 388 (411)
.+.+++++++++++|.|||++||+ +++|+|++|++|||||||++.+|+++.+ +++++.. |+||.|.++.|+|.+||+
T Consensus 352 ~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~l~~G~~ADlvv~d~~~~~~i~~~-~~~s~~~-~sp~~g~~~~g~v~~t~~ 429 (490)
T 3dc8_A 352 ATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAK-TQQSAID-YNVFEGKTVTGLPRFTLT 429 (490)
T ss_dssp TTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEEEECCTT-TCSSSSS-CCTTTTCEEEEEEEEEEE
T ss_pred HcCCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCcCCEEEEecCcceEechh-hccccCC-CCcccCcEEeeEEEEEEE
Confidence 456699999999999999999999 7899999999999999999999999998 8889888 999999999999999999
Q ss_pred CCEEEEEcCcccCC-CCCccccC
Q 015182 389 RGNLVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 389 ~G~~v~~~g~~~~~-~~g~~~~~ 410 (411)
+|++||++|+++.. ..|++|+.
T Consensus 430 ~G~~v~~~g~~~~~~~~G~~~~~ 452 (490)
T 3dc8_A 430 RGVVSIEEGTVKTQEGHGEFVRR 452 (490)
T ss_dssp TTEEEEETTEECCCTTCCCBCCC
T ss_pred CCEEEEECCEEcccCCCceeccC
Confidence 99999999999865 48998864
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-59 Score=457.39 Aligned_cols=390 Identities=38% Similarity=0.688 Sum_probs=329.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|++.++...++++.++++.++++||||+++|+.++.|.....+.++...+.+.....+++.++.+.++.
T Consensus 72 ~PG~iD~H~H~~~~g~~~~~~~~~~~~~~~~~G~Tt~~~~~~~t~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~-- 149 (473)
T 3e74_A 72 SPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY-- 149 (473)
T ss_dssp EECEEEEEECC---------CHHHHHHHHHHTTEEEEEECCSSSSSCSCSHHHHHHHHHHHTTTCSSEEEECEECCTT--
T ss_pred ecCEEEEecccCCCCCCcHHHHHHHHHHHHhCCEEEEEcCcccCCCCcccHHHHHHHHHHhccCCeEEEEEEeecccc--
Confidence 599999999999988888999999999999999999999986677777788888887777777778999888776553
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCC----CCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccch---hhhhhccCcCC
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE---RHVKLEDDTLD 153 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~----~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~---~~~~~~~~~~~ 153 (411)
.++++.++.+.|+.++|+|+.+.+. ++.+.++++.+++++++|+++|+++.+|+++...+. ..... .+
T Consensus 150 -~~~~l~~l~~~G~~~~K~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~----~g 224 (473)
T 3e74_A 150 -NIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKR----EG 224 (473)
T ss_dssp -CTTTHHHHHHHTCSCEEEEC------------CCCCHHHHHHHHHHHHHHTCCEEEECSCHHHHHHHHHHHHH----HT
T ss_pred -hHHHHHHHHHcCCCEEEEeccccCCcccccccCCCCHHHHHHHHHHHHhcCCeEEEEecCHHHHHHHhhHHHh----cC
Confidence 3456777778899999999986421 244567899999999999999999999999874433 11222 22
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~ 233 (411)
..+...+...+|..+|..++.+++.+++++ +.++|++|+++. +.+++++.+|++|+.++++++||+++++.+
T Consensus 225 ~~~~~~~~~~~p~~~e~~av~~~l~la~~~-------g~~lhi~Hvst~-~~l~li~~ak~~G~~vt~e~~ph~l~l~~~ 296 (473)
T 3e74_A 225 RVTAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVCHVSSP-EGVEEVTRARQEGQDITCESCPHYFVLDTD 296 (473)
T ss_dssp CCSHHHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECSCCSH-HHHHHHHHHHHTTCCEEEEECTHHHHCCHH
T ss_pred CcChhhcccCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCeEEEEchHhhhcCHH
Confidence 445566778999999999999999999987 889999999998 899999999999999999999999999988
Q ss_pred ccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhc
Q 015182 234 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKY 312 (411)
Q Consensus 234 ~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 312 (411)
++...+...+++||+|...++.+||+++++|++++++|||+|++..+| ..+|+.+|.|+++++..++.+++. +.+.
T Consensus 297 ~~~~~~~~~~~~Pplr~~~~~~~L~~~l~~G~~~~i~tDh~p~~~~~k---~~~f~~~~~G~~g~e~~l~~~~~~~~~~~ 373 (473)
T 3e74_A 297 QFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWGGIAGLQSCMDVMFDEAVQKR 373 (473)
T ss_dssp HHHHHCGGGCCSSCCCCHHHHHHHHHHHHTTCCCEECCCBCCCCTTTT---CSCTTTSCCCBCCGGGHHHHHHHHHTTTT
T ss_pred HHhCCCCcEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCCHHHc---ccChhhcCCCcccHHhHHHHHHHHHHHcC
Confidence 776667778899999999999999999999999999999999998777 358999999999999999998874 4566
Q ss_pred CCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEE
Q 015182 313 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 392 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~ 392 (411)
+++++++++++|.|||+++|++++|+|++|++|||||||++.+|.++.+ +++++.. |+||+|.++.++|.+||++|++
T Consensus 374 ~~~~~~~~~~~t~~~a~~~g~~~~G~l~~G~~AD~vv~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~g~v~~t~v~G~~ 451 (473)
T 3e74_A 374 GMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTND-DLEYRHK-VSPYVGRTIGARITKTILRGDV 451 (473)
T ss_dssp CCCHHHHHHHHTHHHHHHTTCTTSSCCSTTSBCCEEEEESSCCEECCGG-GCCSSSC-CCTTTTCEESCEEEEEEETTEE
T ss_pred CCCHHHHHHHHhHHHHHHhCCCCCCccCCCCccCEEEEeCCCCEEECHH-HccccCC-CCCCCCCEEeeEEEEEEECCEE
Confidence 7999999999999999999996689999999999999999999999988 8888888 9999999999999999999999
Q ss_pred EEE-cCcccCCCCCccccC
Q 015182 393 VYK-EGNHAPAACGSPILA 410 (411)
Q Consensus 393 v~~-~g~~~~~~~g~~~~~ 410 (411)
||+ +|+++..+.|+.|++
T Consensus 452 v~~~~g~~~~~~~G~~~~~ 470 (473)
T 3e74_A 452 IYDIEQGFPVAPKGQFILK 470 (473)
T ss_dssp EEETTTBCCSCCCCCEECC
T ss_pred EEecCCeEccCCCceeecC
Confidence 999 999998888999875
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=448.39 Aligned_cols=395 Identities=28% Similarity=0.402 Sum_probs=337.1
Q ss_pred CCceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|+..+ +...++++.++++.++++||||+++++ ++.+.....+.++...+.......+++.++...+..
T Consensus 51 ~PG~ID~H~H~~~~~~~~~~~e~~~~~~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 129 (461)
T 3sfw_A 51 LPGGIDPHTHLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFC-LTSKGESLHSAIATWHEKARGKAVIDYGFHLMVSDA 129 (461)
T ss_dssp EECEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-CCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSCC
T ss_pred EeeeEEeEeccCcCCCCcccHhHHHHHHHHHHhCCEEEEEccC-CCCCcchHHHHHHHHHHHhhcCcEEEEEEEEEEeCC
Confidence 59999999999876 556788999999999999999999998 666665666777777666666778898888766544
Q ss_pred CccchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 79 NAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 79 ~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
..+.++++.++.+ .|+.++|+|+++. +.+..+.+++.++++.|+++|+++.+|+++...+........ ..+..+.
T Consensus 130 ~~~~~~~~~~l~~~~G~~~ik~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~Hae~~~~~~~~~~~~~-~~G~~~~ 205 (461)
T 3sfw_A 130 NDHVLEELESVVNNEGITSLKVFMAYK---NVLMADDETLFKTLIRAKELGALVQVHAENGDVLDYLTKQAL-AEGNTDP 205 (461)
T ss_dssp CHHHHHHHHHHHHTSCCCEEEEESSST---TTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHH-HTTCCST
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEecC---CCcccCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH-hcCCCCh
Confidence 4456778888988 8999999999874 334678999999999999999999999998776543221110 1233455
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..+...+|..+|..++.+++.++..+ +.++|++|+++. +.+++++.+|++|+++++++||||++++.+++..
T Consensus 206 ~~~~~~~p~~~e~~av~~~~~la~~~-------g~~~hi~H~s~~-~~l~~i~~ak~~G~~vt~e~~ph~l~l~~~~~~~ 277 (461)
T 3sfw_A 206 IYHAYTRPPEAEGEATGRAIALTALA-------DAQLYVVHVSCA-DAVRRIAEAREKGWNVYGETCPQYLVLDITALEK 277 (461)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHT-------TCEEEECSCCSH-HHHHHHHHHHHTTCEEEEEECHHHHHCCGGGGGC
T ss_pred hHhcccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEecCcH-HHHHHHHHHHhcCCcEEEeeccceEEEcHHHhcC
Confidence 56778999999999999999999876 899999999998 8999999999999999999999999999888765
Q ss_pred ---CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCCh-hhhhcccCCccccCCCCchhhhHHHHHHHHHH-hc
Q 015182 238 ---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP-ELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KY 312 (411)
Q Consensus 238 ---~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~-~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 312 (411)
.+...+++||+|...++.+||+++.+|.+++++|||+|++. ..|..+.++|..++.|+++++..++.+++... ..
T Consensus 278 ~~~~~~~~~~~Pplr~~~~~~aL~~~l~~G~~~~i~sD~~p~~~~~~k~~~~~~~~~~~~G~~g~e~~~~~~~~~~~~~~ 357 (461)
T 3sfw_A 278 PDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKG 357 (461)
T ss_dssp TTTGGGGGCCSSCCCCTHHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTT
T ss_pred ccccCCcEEEcCCCCChHHHHHHHHHHhcCCceEEECCCCCCCchhhhhcccCCHhhCCCCCccHHHHHHHHHHHHHHcC
Confidence 36778899999999999999999999999999999999983 33333346899999999999999998887544 44
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
+++++++++++|.|||+++|+ +++|+|++|++|||||||++.+|.++.+ +++++.. |+||.|.++.++|.+||++|+
T Consensus 358 ~~~~~~~~~~~t~~~a~~~g~~~~~G~l~~G~~Ad~~~~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~~~v~~t~v~G~ 435 (461)
T 3sfw_A 358 KISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVE-THHMNVD-YNPFEGMQVHGDVISVLSRGA 435 (461)
T ss_dssp SSCHHHHHHHHTHHHHHHHTCTTTSSSCSTTSBCCEEEEEEEEEEECCTT-TCCSSSS-CCTTTTCEEEEEEEEEEETTE
T ss_pred CCCHHHHHHHHhHHHHHHcCCCCCCCccCCCCcCCEEEEcCCCCEEEchH-HcccccC-CCCCCCCEecceEEEEEECCE
Confidence 599999999999999999999 7799999999999999999999999998 8888888 999999999999999999999
Q ss_pred EEEEcCcccCC-CCCccccC
Q 015182 392 LVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 392 ~v~~~g~~~~~-~~g~~~~~ 410 (411)
+||++|+++.. +.|+.|+.
T Consensus 436 ~v~~~g~~~~~~~~G~~~~~ 455 (461)
T 3sfw_A 436 FVVRNKQFVGHAGAGRYVKR 455 (461)
T ss_dssp EEEETTEECCCTTCCCBCCC
T ss_pred EEEECCeeccCCCCceEecC
Confidence 99999999875 46999875
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-55 Score=424.32 Aligned_cols=372 Identities=26% Similarity=0.415 Sum_probs=318.9
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-C
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-N 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (411)
+|||||+|+|+..++....+++...++.++++||||+++++ ++.|.....+.++.+.+..+....+++..++.++.. .
T Consensus 51 ~PG~iD~H~H~~~~g~~~~~~~~~~~~~~~~~G~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (424)
T 3gri_A 51 SPGFVDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPMP-NTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQL 129 (424)
T ss_dssp EECEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESBGGGC
T ss_pred EeCeEEeeecCCCCCCCCHHHHHHHHHHHHhCCEEEEeECc-CCCCCCChHHHHHHHHHHhccCCCceEEEEEEEecCCC
Confidence 59999999999988888899999999999999999999999 777777778888877766655455676655554432 2
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++.++.+.|+.+++. .+.+..+++.++++++.|+++|+++.+|+++...+..... ..+......
T Consensus 130 ~~~l~~l~~l~~~G~~~~~~-------~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~----~~g~~~~~~ 198 (424)
T 3gri_A 130 GKELVDFPALVKEGAFAFTD-------DGVGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAM----HEGKRSKEL 198 (424)
T ss_dssp SSSBCCHHHHHTTTCCCEEE-------CSSCCCSHHHHHHHHHHHHHHTCCEEECCCCGGGCTTCCE----ESSHHHHHH
T ss_pred cchHHHHHHHHhcCcEEEec-------CCcCcCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHhhhhh----hcCccchhh
Confidence 23455678888888877743 2334678999999999999999999999999876543322 122344556
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...+|...|..++.+.+.++++. +.++|++|+++. +.+++++.+|++|+++++++||||++++.+.+...+
T Consensus 199 ~~~~~p~~~E~~~v~r~~~la~~~-------g~~~~i~H~s~~-~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~~~ 270 (424)
T 3gri_A 199 GIPGIPNICESVQIARDVLLAEAA-------GCHYHVCHVSTK-ESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPGNN 270 (424)
T ss_dssp TCCEECTHHHHHHHHHHHHHHHHH-------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGCCSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCCH-HHHHHHHHHHHcCCCEEEEecHHHHhcCHHHHhCcC
Confidence 677899999999999999999877 889999999998 899999999999999999999999999998887778
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQ 318 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~ 318 (411)
...+++||+|...++.+||+++.+|.+++++|||+|++...|. .+|+.++.|+++++..++.+++.. .+.++++++
T Consensus 271 ~~~~~~Pplr~~~~~~~L~~~l~~G~i~~igtDhap~~~~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~ 347 (424)
T 3gri_A 271 AIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKA---QPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQ 347 (424)
T ss_dssp GGGCCSSCCCCHHHHHHHHHHHHTTSSCEECCCBCCCCHHHHT---SCTTTSCCCCCCTTTHHHHHHHHHTTTSSCCHHH
T ss_pred ceEEEeCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHcc---CCHhHCCCCCccccccHHHHHHHHHHcCCCCHHH
Confidence 8899999999999999999999999999999999999988774 578899999999999999988654 455699999
Q ss_pred HHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCc
Q 015182 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398 (411)
Q Consensus 319 al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~ 398 (411)
+++++|.|||+++|+ ++|+|++|+.|||||||++.+|.++.+ +++++.. |+||.|.++.++|.+||++|++||++|+
T Consensus 348 ~~~~~t~~~a~~~g~-~~g~l~~G~~Ad~~~~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~g~v~~t~~~G~~v~~~g~ 424 (424)
T 3gri_A 348 LVDYLTIKPCETFNL-EYGTLKENGYADLTIIDLDSEQEIKGE-DFLSKAD-NTPFIGYKVYGNPILTMVEGEVKFEGDK 424 (424)
T ss_dssp HHHHHTHHHHHHTTC-SCSCCCTTSBCCEEEEESSCCEECCGG-GCSSSCC-CCTTTTCEESCEEEEEEETTEEEEEC--
T ss_pred HHHHHhHHHHHHhCC-CCCcccCCCcCCEEEEcCCCCEEEchh-hcccccC-CCCcCCCEEeeeEEEEEECCEEEEeCCC
Confidence 999999999999999 689999999999999999999999988 8888888 9999999999999999999999999985
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=425.95 Aligned_cols=379 Identities=40% Similarity=0.700 Sum_probs=327.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|+..++....+++...++.++++||||+++++.++.|.....+.+..+.+.......+++.++.+.++.+
T Consensus 58 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 136 (448)
T 3hm7_A 58 FPGMVDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPGN- 136 (448)
T ss_dssp EECEEEEEECCCTTTSGGGCCSHHHHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEEEEEEECCTTC-
T ss_pred ecCEEEeeeccCCCCCCcHhHHHHHHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEEEEEEEecccC-
Confidence 5999999999998887778889999999999999999999856667777888888777666555678888887765533
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchh---hhhhccCcCCcccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER---HVKLEDDTLDTRSY 157 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~---~~~~~~~~~~~~~~ 157 (411)
++++.++.+.|+.++|+|++|...+.....+.+.+.++++.|+++|+++.+|+++...+.. .+.. .+..+.
T Consensus 137 --~~~l~~l~~~g~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~a~~~g~~v~vH~~~~~~~~~~~~~~~~----~g~~~~ 210 (448)
T 3hm7_A 137 --IDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIE----EQRLTV 210 (448)
T ss_dssp --GGGHHHHHHTTCSEEEEESSSCSSSSSCCCCHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHHHH----TTCCSH
T ss_pred --HHHHHHHHHcCCCEEEEeeccccCCccCcCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHh----cCCcCh
Confidence 5567777889999999999886433324568999999999999999999999998765432 2222 234566
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..+...+|..+|..++.++++++++. +.++|++|+++. +.+++++.++++|+.++++++||+++++.+.+..
T Consensus 211 ~~~~~~~p~~~e~~av~~~~~la~~~-------g~~~~i~H~s~~-~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~ 282 (448)
T 3hm7_A 211 KDYSEARPIVSELEAVERILRFAQLT-------CCPIHICHVSSR-KVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAE 282 (448)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHH-------TCCEEECCCCCH-HHHHHHHHHHHTTCCEEEEECHHHHHCCHHHHHH
T ss_pred hhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHhcCCCEEEEechHHHccCHHHhcC
Confidence 67788999999999999999999887 889999999998 8999999999999999999999999998877665
Q ss_pred CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCH
Q 015182 238 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTL 316 (411)
Q Consensus 238 ~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~ 316 (411)
.+...+++||+|...++..||+++.+|.+++++|||+|++...|.. .+|..+|.|+++++..++.+++... ..++++
T Consensus 283 ~~~~~~~~Pplr~~~~~~~l~~~l~~g~~~~i~tD~~p~~~~~k~~--~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~ 360 (448)
T 3hm7_A 283 IGYLAKCAPPLRERQEVEDLWDGLMAGEIDLISSDHSPSLPQMKTG--KTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPL 360 (448)
T ss_dssp HCSTTCCSSCCCCHHHHHHHHHHHHHTCCCEECCCBCCCCGGGGCC--SSTTTSCCCBCCTTTHHHHHHHHTTTTTCCCH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHhcCCccEEEeCCCCCCHHHccc--CCHhhCCCCCccHHHHHHHHHHHHHhcCCcCH
Confidence 5777889999999999999999999999999999999999877643 2588899999999999999887544 667999
Q ss_pred HHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 317 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 317 ~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
+++++++|.|||+++|+ +++|+|++|++|||||||++.+|.++.+ +++++.. |+||.|.++.++|.+||++|++||+
T Consensus 361 ~~~~~~~t~~~A~~~g~~~~~g~l~~G~~Ad~~~~d~~~~~~~~~~-~~~~~~~-~sp~~g~~~~g~v~~t~~~G~~v~~ 438 (448)
T 3hm7_A 361 TQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNAS-DLYYRHP-ISPYVGQRFRGKVKHTICQGKHVYQ 438 (448)
T ss_dssp HHHHHHHTHHHHHHHTCTTTSSCCSTTSBCCEEEEEEEEEEECCGG-GCCSSSC-CCTTTTCEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHhHHHHHHcCCCCCCCcccCCCcCCEEEEeCCCCEEEChH-hcccccC-CCCCCCCEEEEEEEEEEECCEEEEE
Confidence 99999999999999999 7899999999999999999999999988 8888888 9999999999999999999999999
Q ss_pred cCc
Q 015182 396 EGN 398 (411)
Q Consensus 396 ~g~ 398 (411)
+++
T Consensus 439 ~~~ 441 (448)
T 3hm7_A 439 DHE 441 (448)
T ss_dssp CC-
T ss_pred CCC
Confidence 985
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-53 Score=426.47 Aligned_cols=391 Identities=25% Similarity=0.384 Sum_probs=313.3
Q ss_pred CCceeecccccCCC---CCCccCChHHHHHHHHcCCceeEecCCCCCC---CCCC-CHHHHHHHHHHHhc-CCceEEEEE
Q 015182 1 MPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSD---PSTI-STETLKLKVDAAEK-RIYVDVGFW 72 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~---~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 72 (411)
+|||||+|+|+..+ +..+.++++++++.++++||||++||+ +.. +... ..+.+....+.... ...+++.++
T Consensus 54 ~PGlID~H~H~~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 132 (559)
T 2fty_A 54 TPGGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFS-TQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLH 132 (559)
T ss_dssp EECEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEE-ECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEE
T ss_pred EcCEEeeccCcCccccccCCCHHHHHHHHHHHHhCcEEEEEECc-CcccCCcchHHHHHHHHHHHHHHHhhcceeEEEee
Confidence 69999999999876 234678899999999999999999998 543 3222 22333100022222 356777776
Q ss_pred eeecCC---Ccc---ch-HHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh
Q 015182 73 GGLVPE---NAY---NA-SALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 144 (411)
Q Consensus 73 ~~~~~~---~~~---~~-~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~ 144 (411)
...+.. ..+ .+ +++.+++ +.|+.++|+|+++.+ ..++.++|+++++.|+++|+++.+|+++...+...
T Consensus 133 ~~~~~~~~~~~~~g~~l~~~~~~l~~~~G~~~iki~~~~~~----~~~s~e~l~~~~~~A~~~g~~v~~H~e~~~~i~~~ 208 (559)
T 2fty_A 133 LILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG----LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWM 208 (559)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTT----TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHH
T ss_pred eeeccCcCCCchhhhhHHHHHHHHHHHCCCCEEEEEecCCC----CcCCHHHHHHHHHHHHhCCCEEEEECCChHHHHHH
Confidence 544332 222 44 6677776 569999999998642 36789999999999999999999999887654432
Q ss_pred ---hhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEE
Q 015182 145 ---VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITV 221 (411)
Q Consensus 145 ---~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~ 221 (411)
+.+.| ......+...+|...|..++.+++.+++.. +.++|++|++.. +++++|+.++++|++|++
T Consensus 209 ~~~~~~~G----~~~~~~~~~~~p~~~E~~av~~~i~la~~~-------g~~vhi~H~s~~-~~~~~i~~ak~~G~~Vt~ 276 (559)
T 2fty_A 209 IEALEEQG----LTDAYYHGVSRPSIVEGEATNRAITLATTM-------DTPILFVHVSSP-QAAEVIKQAQTKGLKVYA 276 (559)
T ss_dssp HHHHHHTT----CCSTTHHHHTSCHHHHHHHHHHHHHHHHHT-------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHhcC----CCChhhcccCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEcCCCH-HHHHHHHHHHHcCCceEE
Confidence 12222 334445667899999999999999998876 889999999997 789999999999999999
Q ss_pred EcccccccccccccC-----------------------------C-CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcC
Q 015182 222 ETCPHYLAFSAEEIP-----------------------------D-GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSS 271 (411)
Q Consensus 222 ~~~p~~l~~~~~~~~-----------------------------~-~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~s 271 (411)
++||+|++++.+.+. . .+...++.||+|...++..+|+++++|++++|+|
T Consensus 277 e~~p~~l~l~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~PplR~~~~~~~l~~~l~~G~~~~igT 356 (559)
T 2fty_A 277 ETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGS 356 (559)
T ss_dssp EECHHHHHCCGGGGSCC--------CCSCCGGGCSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHTTSCSEECC
T ss_pred eecCcccccCHHHhhccccccccccccccCccccccccccccCccccccCcEECCCCCCHHHHHHHHHHHhcCceEEEEe
Confidence 999999998766551 1 2455678999999999999999999999999999
Q ss_pred CCCCCChhhh-------------hcccCCccccCCCCchhhhHHHHHHHHHHhc-CC-CHHHHHHHHhHhHHHHhCC-CC
Q 015182 272 DHSPTVPELK-------------LLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GV-TLEQLASWWSERPAKLAGQ-VS 335 (411)
Q Consensus 272 D~~p~~~~~k-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l-~~~~al~~~T~n~A~~lg~-~~ 335 (411)
||+|++...| ..+..+|..+|.|+++++++++.+++..... .+ +++++++++|.|||++||+ ++
T Consensus 357 D~~p~~~~~k~~~~~k~~~~~~~~~~~~~f~~~~~G~~g~e~~l~~ll~~~v~~~~l~~~~~~~~~~t~~~A~~lgl~~~ 436 (559)
T 2fty_A 357 DHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQ 436 (559)
T ss_dssp CBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTT
T ss_pred CCCCCChhhccccccccccccccccccCCHhhCCCCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHhHHHHHHhCCCCC
Confidence 9999876532 1112578899999999999999888655444 59 9999999999999999999 67
Q ss_pred CCccccc-CCccEEEEcCCC--------eeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCC-CCC
Q 015182 336 KGAIAIG-NHADLVVWEPEA--------EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACG 405 (411)
Q Consensus 336 ~G~I~~G-~~ADlvv~d~~~--------~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~-~~g 405 (411)
+|+|++| ++|||||||++. +|.++.+ +++++.. |+||+|+++.++|..||++|++||++|+++.. +.|
T Consensus 437 ~G~i~~G~~~ADlvv~d~~~~~~~~~~~~~~~~~~-~~~s~~~-~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~G 514 (559)
T 2fty_A 437 KGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNK-LMEHNCD-YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADG 514 (559)
T ss_dssp SSSCCTTTSBCCEEEECCSSCCCCCTTSCSBCCTG-GGTSSCS-CCTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCC
T ss_pred CceeeccCCcCCEEEEeCcccccccCCccEEEchH-HhcccCC-CCCccCCEecceEEEEEECCEEEEECCeeccCCcCC
Confidence 9999999 999999999997 8899988 8888888 99999999999999999999999999999865 569
Q ss_pred ccccC
Q 015182 406 SPILA 410 (411)
Q Consensus 406 ~~~~~ 410 (411)
++|+.
T Consensus 515 ~~~~~ 519 (559)
T 2fty_A 515 KYLKR 519 (559)
T ss_dssp CBCCC
T ss_pred eeecC
Confidence 99874
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-53 Score=412.16 Aligned_cols=374 Identities=28% Similarity=0.435 Sum_probs=317.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-C
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-N 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (411)
+|||||+|+|+..++....+++...++.++++||||+++++ ++.|.....+.++.+.+..+.....++..+..++.. .
T Consensus 52 ~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (428)
T 3mpg_A 52 APGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQA 130 (428)
T ss_dssp EECEEEEEECCCTTTCTTTCCHHHHHHHHHHHTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEECEESBGGGC
T ss_pred eeCEEEEeeccCCCCCCchhHHHHHHHHHHhCCeEEEEeCC-CCCCCCCcHHHHHHHHHHhcccCCcEEEEEeeEecCCC
Confidence 59999999999988888889999999999999999999999 777777777788777666554455666665544432 1
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++.++.+.|+.++.. .+.+..+++.++++++.|+++|+++.+|+++...+...+.. .+......
T Consensus 131 ~~~l~~~~~l~~~G~~~~~~-------~~~~~~~~~~l~~~~~~a~~~g~~v~vH~~~~~~~~~~~~~----~g~~~~~~ 199 (428)
T 3mpg_A 131 GSEMTDFETLKELGAFAFTD-------DGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVH----EGKFSEKH 199 (428)
T ss_dssp SSSBCCHHHHHHTTCCCEEC-------TTSCCCCHHHHHHHHHHHHHTTCCEEECCCCGGGCTTCSEE----TTHHHHHT
T ss_pred cchHHHHHHHHHhCCEEEEC-------CCcCCCCHHHHHHHHHHHHhcCCeEEEECCChhHhhhHHhh----cCccchhh
Confidence 23455677888888877642 23346789999999999999999999999987665433221 22334455
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+..++|...|..++.+.+.++++. +.++|++|+++. +.+++++.++++|+.+++++||||++++.+.+...+
T Consensus 200 ~~~~~p~~~e~~~v~~~~~la~~~-------g~~~~i~H~s~~-~~~~~i~~a~~~G~~v~~e~~p~~l~l~~~~~~~~~ 271 (428)
T 3mpg_A 200 GLNGIPSVCESVHIARDILLAEAA-------DCHYHVCHVSTK-GSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSAD 271 (428)
T ss_dssp TCCEECTHHHHHHHHHHHHHHHHH-------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEECBCHHHHHCCGGGCCSSC
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHhcCCCEEEEEchHHhEECHHHHhCCC
Confidence 667899999999999999988876 889999999998 899999999999999999999999999988887778
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQ 318 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~ 318 (411)
...+++||+|...++.+||+++.+|.+++++|||+|++...|. .+|+.+|.|+++++..++.+++.+. ..++++++
T Consensus 272 ~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~tDh~p~~~~~k~---~~~~~~p~g~~g~e~~~~~~~~~~~~~~~~~~~~ 348 (428)
T 3mpg_A 272 PNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKA---QGIERAPFGITGFETAFPLLYTNLVKKGIITLEQ 348 (428)
T ss_dssp GGGCCSSCCCCHHHHHHHHHHHHHTSSCCBCCCBCCCCTTGGG---SCTTTSCSCCCCTTTHHHHHHHHTTTTTSSCHHH
T ss_pred CeEEEeCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCCCHHHcc---cCHhhCCCCceehhhHHHHHHHHHHHcCCCCHHH
Confidence 8899999999999999999999999999999999999887774 3688899999999999999887544 45699999
Q ss_pred HHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCc
Q 015182 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398 (411)
Q Consensus 319 al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~ 398 (411)
+++++|.|||++||++ +|+|++|+.|||||||++.+|.++.+ +++++.. |+||.|.++.++|.+||++|++||++|+
T Consensus 349 ~~~~~t~~~a~~~g~~-~g~i~~G~~Ad~~~~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~g~v~~t~v~G~~v~~~g~ 425 (428)
T 3mpg_A 349 LIQFLTEKPADTFGLE-AGRLKEGRTADITIIDLEQEEEIDPT-TFLSKGK-NTPFAGWKCQGWPVMTIVGGKIAWQKES 425 (428)
T ss_dssp HHHTTTHHHHHHHTCS-CSCCCTTSBCCEEEEESSCCEECCGG-GCSSSCC-CCSCTTCEECCEEEEEEETTEEEEECSC
T ss_pred HHHHHhHHHHHHhCCC-CccccCCCcCCEEEEcCCCCEEEchh-hccccCC-CCCcCCCEEeeEEEEEEECCEEEEeCCc
Confidence 9999999999999997 99999999999999999999999888 8888888 9999999999999999999999999998
Q ss_pred cc
Q 015182 399 HA 400 (411)
Q Consensus 399 ~~ 400 (411)
++
T Consensus 426 ~~ 427 (428)
T 3mpg_A 426 AL 427 (428)
T ss_dssp C-
T ss_pred cc
Confidence 74
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-51 Score=403.70 Aligned_cols=395 Identities=25% Similarity=0.364 Sum_probs=315.6
Q ss_pred CCceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|+..+ +....++++.+++.++++||||++|++ +..+.....+.++...+.......++++++......
T Consensus 51 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (458)
T 1gkp_A 51 FPGFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMC-CPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKF 129 (458)
T ss_dssp EECEEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-CCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCC
T ss_pred ecCEEecccCCCcCCCCCcCHhHHHHHHHHHHhCCccEEEeCC-CCCCCCCHHHHHHHHHHHhccCceeeEEEEEeecCC
Confidence 69999999999865 334678888889999999999999987 444444445566665554445566777766443333
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
+.+.+.++.++.+.|+..+|+++++.. ....+.+++.++++.|+++|+++.+|+++...+...+...- ..+.....
T Consensus 130 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~l~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~-~~G~~~~~ 205 (458)
T 1gkp_A 130 DEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLL-SEGKTGPE 205 (458)
T ss_dssp CTTHHHHHHHHHHTTCCEEEEEECSTT---TTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHH-HTTCCSGG
T ss_pred chhhHHHHHHHHHhCCCEEEEEeccCC---CcCCCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH-hcCCCChh
Confidence 334467788888889999999887642 23578899999999999999999999987654432211100 11233344
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC-
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD- 237 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~- 237 (411)
++...+|...|..++.++++++... +.++|+.|++.. +.++.++.+++.|+.+++++||++++++.+++..
T Consensus 206 ~~~~~~p~~~~~~~~~~~~~~~~~~-------g~~~~~~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~ 277 (458)
T 1gkp_A 206 WHEPSRPEAVEAEGTARFATFLETT-------GATGYVVHLSCK-PALDAAMAAKARGVPIYIESVIPHFLLDKTYAERG 277 (458)
T ss_dssp GTTTTSCHHHHHHHHHHHHHHHHHH-------TCEEEECSCCSH-HHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSC
T ss_pred hccCcCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHcCCeEEEEecccceeeCHHHhccc
Confidence 5556789888888888888888766 889999999987 7889999999999999999999999888766532
Q ss_pred --CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcC-C
Q 015182 238 --GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-V 314 (411)
Q Consensus 238 --~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-l 314 (411)
.+...++.||+|...+++.+|+++++|++++++||++|++...|....++|+..+.|+++.+..++.+++...+.+ +
T Consensus 278 ~~~g~~~~~~~p~r~~~~~~~l~~~~~~G~~~~~gtD~~~~~~~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~l 357 (458)
T 1gkp_A 278 GVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRL 357 (458)
T ss_dssp HHHHHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSC
T ss_pred ccCCcceEEeCCCCCHHHHHHHHHHHhcCCeeEEECCCCCCCHHHhhcccCChhhCCCCcccHHHHHHHHHHHHHHcCCC
Confidence 1223356799999989999999999999999999999998766654446788889999999988888877665555 9
Q ss_pred CHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 315 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 315 ~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
|++++++++|.|||++||+ +++|+|++|++|||||||++.++.++.+ ++.++.. ++||.|....++|..||++|++|
T Consensus 358 s~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~~~v~~v~v~G~~v 435 (458)
T 1gkp_A 358 DIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVK-TQHVNND-YNGFEGFEIDGRPSVVTVRGKVA 435 (458)
T ss_dssp CHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEETTCCEECCGG-GCCSSSS-CCTTTTCEESCEEEEEEETTEEE
T ss_pred CHHHHHHHHhhCHHHHhCCCCCCCcCCCCCcCCEEEEeCCCCeEEchH-HcccccC-CCccCCCEEeeEEEEEEECCEEE
Confidence 9999999999999999999 6799999999999999999988888877 7777777 99999999999999999999999
Q ss_pred EEcCcccCCCC-CccccC
Q 015182 394 YKEGNHAPAAC-GSPILA 410 (411)
Q Consensus 394 ~~~g~~~~~~~-g~~~~~ 410 (411)
|++|+++..++ |+.|+.
T Consensus 436 ~~~g~~~~~~~~G~~~~~ 453 (458)
T 1gkp_A 436 VRDGQFVGEKGWGKLLRR 453 (458)
T ss_dssp EETTEECCCTTCCCBCCC
T ss_pred EECCeeccCCCCceeccC
Confidence 99999997754 999875
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=390.59 Aligned_cols=392 Identities=30% Similarity=0.470 Sum_probs=309.5
Q ss_pred CCceeecccccCCCC-CCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC
Q 015182 1 MPGLIDVHAHLDDPG-RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~-~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (411)
+|||||+|+|+..++ ..+.+++...++.++++||||++|++.++.+.....+.++...+...... +++.++.+..+
T Consensus 53 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 129 (458)
T 1gkr_A 53 MPGVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLK-VDFALYGGGVP-- 129 (458)
T ss_dssp EECEEEEEEECCCGGGTTTSCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS-SEEEEEEECCT--
T ss_pred ecCEEEeeecccCCCCCCchhHHHHHHHHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhCc-eeEEEEeccCC--
Confidence 699999999998765 55677888899999999999999997333444445566666655555444 67766654433
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh---hhhccCcCCccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDTRS 156 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~~~ 156 (411)
+.++++.++.+.|+.++|+++++....+....+.++++++++.|+++|+++.+|+++...++.. +.+.| ...
T Consensus 130 -~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~G----~~~ 204 (458)
T 1gkr_A 130 -GNLPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAG----GKD 204 (458)
T ss_dssp -TCHHHHHHHHHTTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTT----CCS
T ss_pred -CCHHHHHHHHHcCCcEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHhhcC----ccc
Confidence 2355677778889999999988653112346789999999999999999999999876544321 11222 111
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
...|...+|..++..++.+++.++.+. +.++|+.|+++. .+++.++.+++.|++++++++|++++++.+.+.
T Consensus 205 ~~~h~~~~~~~~~~~~~~~~~~la~~~-------g~~~h~~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~ 276 (458)
T 1gkr_A 205 MAAYEASQPVFQENEAIQRALLLQKEA-------GCRLIVLHVSNP-DGVELIHQAQSEGQDVHCESGPQYLNITTDDAE 276 (458)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHH-------CCEEEECCCCSH-HHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHH
T ss_pred hhhccccCCHHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHCCCcEEEEEchHHheeCHHHhh
Confidence 122334567777778888888888776 889999999987 788889888888988999999999988766543
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh-cCCC
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVT 315 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~ 315 (411)
..+...++.||+|.......+++++++|+++++|||+.|++...|..+..+|+..+.|+.+.+..++.+++...+ .++|
T Consensus 277 ~~~~~~~~~pp~r~~~~~~~l~~~~~~G~~~~lgtD~~~~~~~~k~~g~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l~ 356 (458)
T 1gkr_A 277 RIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLS 356 (458)
T ss_dssp HHGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHhCCCceEEEeCCCCCChHHhccccCCHhHCCCCcccHHHHHHHHHHHHHHhCCCC
Confidence 334556778999998899999999999999999999988876655422246777788888888888777664444 4799
Q ss_pred HHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEE
Q 015182 316 LEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 316 ~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~ 394 (411)
++++++++|.|||++||+ +++|+|++||+|||||||++.++.++.+ ++.++.. |+||+|.++.++|..||++|++||
T Consensus 357 ~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~v~~v~v~G~~v~ 434 (458)
T 1gkr_A 357 LERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDAS-QFRSLHK-YSPFDGMPVTGAPVLTMVRGTVVA 434 (458)
T ss_dssp HHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEESCCCEECCGG-GCSSSCC-CCTTTTCEECCEEEEEEETTEEEE
T ss_pred HHHHHHHHhhhHHHHhCCCCCCccCCCCCcCCEEEEcCCcceEEcHH-HccccCC-CCCcCCCEeeeEEEEEEECCEEEE
Confidence 999999999999999999 5799999999999999999988888887 7888888 999999999999999999999999
Q ss_pred EcCcccCCCC-CccccC
Q 015182 395 KEGNHAPAAC-GSPILA 410 (411)
Q Consensus 395 ~~g~~~~~~~-g~~~~~ 410 (411)
++|+++..+. |+.|+.
T Consensus 435 ~~g~~~~~~~~G~~~~~ 451 (458)
T 1gkr_A 435 EKGEVLVEQGFGQFVTR 451 (458)
T ss_dssp ETTEECSCTTCCCBCCC
T ss_pred ECCccccCCCCCeecCC
Confidence 9999987655 998874
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=395.18 Aligned_cols=392 Identities=21% Similarity=0.301 Sum_probs=310.0
Q ss_pred CCceeecccccCCCCC--CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~--~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|+..+.. .+.++++.+++.++++||||++|+. ...+.....++++.....+.....++++++......
T Consensus 59 ~PGlID~H~H~~~~~~~~~~~e~~~~~~~~a~~~G~Ttv~d~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~ 137 (521)
T 2ftw_A 59 LPGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFV-IPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWW 137 (521)
T ss_dssp EECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSC
T ss_pred ecCEEeeecccCcCCCCccCHHHHHHHHHHHHhCCcceecCcC-CCCCCcCHHHHHHHHHHHhhcCceeeEeeEEeecCC
Confidence 6999999999986532 3568899999999999999999976 222223334566655544444556677776554333
Q ss_pred CccchHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh---hhhccCcCCc
Q 015182 79 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDT 154 (411)
Q Consensus 79 ~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~ 154 (411)
+.+.++++.++. +.|+.++|+|+.+.+ ...+++++++++++.|+++|+++.+|+++...+... +.+.| .
T Consensus 138 ~~~~~~~l~~l~~~~G~~~~k~~~~~~~---~~~~~~e~l~~~~~~A~~~g~~v~vH~e~~~~~~~~~~~l~~~G----~ 210 (521)
T 2ftw_A 138 SEQVSREMEILVKERGVNSFKCFMAYKN---SFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMG----I 210 (521)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEESSCTT---TTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTT----C
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEeccCC---CcCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcC----C
Confidence 333455666666 479999999987642 235789999999999999999999999876533222 22222 2
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
.....+...+|...|..++.+.+.++... +.++|+.|+++. ..+++++.+++.|+.++++++|+++.++...
T Consensus 211 ~~~~~h~~~~~~~~e~~a~~~~~~la~~~-------~~p~hi~h~ss~-~~~~~i~~~r~~G~~v~~e~~~~~L~~d~~~ 282 (521)
T 2ftw_A 211 TGPEGHELSRPEALEAEATNRAIVIADSV-------CTPVYIVHVQSI-GAADVICKHRKEGVRVYGEPIAAGLGVDGSH 282 (521)
T ss_dssp CSTHHHHHHSCTHHHHHHHHHHHHHHHHH-------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEECCBHHHHHCCGGG
T ss_pred CChhhccccCcHHHHHHHHHHHHHHHHHh-------CCCEEEEecCcH-HHHHHHHHHHHcCCeEEEEEcchhhccCHHH
Confidence 22222344577778877777877777765 788999999997 7889999999999999999999999887654
Q ss_pred cCC----CCcceEEcCCCCC-hhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH
Q 015182 235 IPD----GDTRFKCAPPIRD-AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 309 (411)
Q Consensus 235 ~~~----~~~~~~~~p~lr~-~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 309 (411)
+.. .+...++.||+|. ..+++.||+++.+|.+++++|||+|+...+|....++|...|.|++|.+.+++..++.+
T Consensus 283 ~~~~~~~~~~~~~~~Pplr~~~~~~~~l~~~l~~g~~~~~gsD~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~ 362 (521)
T 2ftw_A 283 MWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENG 362 (521)
T ss_dssp GGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHH
T ss_pred hcCCCcccCcceEEcCCCCCChhhHHHHHHHhcCCCEEEEEeCCCCCCHHHhhcccCChhhCCCCCccHHHHHHHHHHHH
Confidence 422 1233467899998 67889999999999999999999999877776545688889999999999998888765
Q ss_pred Hhc-CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 310 RKY-GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 310 ~~~-~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
.+. +++++++++++|.|||+++|+ +++|+|++|++|||||||++..+.++.+ .++++.. |+||+|+++.+.|..||
T Consensus 363 v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~i~~G~~ADlvv~d~~~~~~i~~~-~~~~~~~-~~p~~g~~~~g~v~~v~ 440 (521)
T 2ftw_A 363 VNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKD-THHHAVD-FNIFEGIKVTGIAVTTI 440 (521)
T ss_dssp TTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEEEECCTT-TCCCSSS-CCTTTTCEEEEEEEEEE
T ss_pred HhcCCCCHHHHHHHhChhHHHHhCCCCCCCCcCCCCcCCEEEEeCCCCEEEChH-HccccCC-CCCcCCCEeeeeEEEEE
Confidence 544 699999999999999999999 6799999999999999999988999888 8888888 99999999999999999
Q ss_pred ECCEEEEEcCcccC-CCCCccccC
Q 015182 388 SRGNLVYKEGNHAP-AACGSPILA 410 (411)
Q Consensus 388 ~~G~~v~~~g~~~~-~~~g~~~~~ 410 (411)
++|++||++|+++. ...|++|+.
T Consensus 441 v~G~~v~~~g~~~~~~~~G~~~~~ 464 (521)
T 2ftw_A 441 VAGNIVWSDNKLSCVKGSGRFVPR 464 (521)
T ss_dssp ETTEEEEETTEECCCTTCCCBCCC
T ss_pred ECCEEEEECCeecccCcCceEecC
Confidence 99999999999984 567999874
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-49 Score=387.99 Aligned_cols=392 Identities=28% Similarity=0.411 Sum_probs=309.7
Q ss_pred CCceeecccccCC-CCCC-ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDD-PGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~-~~~~-~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|+.. ++.. ..++++.+++.++++||||++|++ ++.|.....+.++...+.......+++.++......
T Consensus 50 ~PGlID~H~H~~~~~~~~~~~e~~~~~~~~~~~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (457)
T 1nfg_A 50 FPGGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFC-QQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDP 128 (457)
T ss_dssp EECEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-ECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSC
T ss_pred ccceEeeccccccCcCCCCChhhHHHHHHHHHhCCcEEEEeCC-CCCCCCChHHHHHHHHHHhcccCccCEEEEEeecCC
Confidence 6999999999973 3333 577888899999999999999998 555554556667666655555566788777654443
Q ss_pred CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhh---hccCcCCcc
Q 015182 79 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVK---LEDDTLDTR 155 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~---~~~~~~~~~ 155 (411)
+.+...++.++.+.|+.++|+++++.. . ...+.+++.++++.++++|+++.+|++....+...+. +.| ..
T Consensus 129 ~~~~~~~~~~~~~~G~~~~k~~~~~~~--~-~~~~~~~~~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~g----~~ 201 (457)
T 1nfg_A 129 TDSVIEELEVLPDLGITSFKVFMAYRG--M-NMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEG----KT 201 (457)
T ss_dssp CHHHHHHTTTGGGGTCCEEEEESSSTT--T-TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTT----CC
T ss_pred chhHHHHHHHHHHcCCCEEEEeeccCC--C-CCCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHhcC----Cc
Confidence 333334455556789999999987642 1 2357888999999999999999999988665443321 111 11
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccccc
Q 015182 156 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235 (411)
Q Consensus 156 ~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~ 235 (411)
....|...+|..++...+.++++++++. |.++|+.|+++. ..++.++.+++.|+.++++++||+++++.+++
T Consensus 202 ~~~~h~~~~~~~~~~~~~~~~~~~a~~~-------g~~~~~~H~~~~-~~~~~~~~~~~~G~~v~~~~~~h~~~~~~~~~ 273 (457)
T 1nfg_A 202 APIYHALSRPPRVEAEATARALALAEIV-------NAPIYIVHVTCE-ESLEEVMRAKSRGVRALAETCTHYLYLTKEDL 273 (457)
T ss_dssp STHHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECCCCSH-HHHHHHHHHHHHTCCEEECEEGGGGTCCGGGG
T ss_pred chhhccccCCHHHHHHHHHHHHHHHHHH-------CCCEEEEeCCcH-HHHHHHHHHHHcCCeEEEEEchHHhEeCHHHh
Confidence 1222334678888888899999999887 889999999987 77889988888898899999999999887766
Q ss_pred CC---CCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChh-hhhcccCCccccCCCCchhhhHHHHHHHHHHh
Q 015182 236 PD---GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE-LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 311 (411)
Q Consensus 236 ~~---~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~-~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (411)
.. .+....++|++|.......+++++++|+++++|||+.|++.. .|..+.++|...+.|+++.+..++.++.....
T Consensus 274 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~~~~G~~~~~gtD~~~~~~~~~k~~~~~~~~~~~~g~~g~e~~~~~~~~~~~~ 353 (457)
T 1nfg_A 274 ERPDFEGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNE 353 (457)
T ss_dssp GCTTTGGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHHHT
T ss_pred ccccccCceeEEcCCCCCHHHHHHHHHHHhCCCeEEEecCCCCCChHHhhhcccCCHhHCCCCcccHHHHHHHHHHHHHc
Confidence 54 355667889999888889999999999999999999887653 33222256777888999988888777744444
Q ss_pred cCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 312 YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
.+++++++++++|.|||++||+ +++|+|++|++|||||||++.++.++.+ ++.++.. |+||+|....++|..||++|
T Consensus 354 ~~l~~~~~l~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~v~~v~v~G 431 (457)
T 1nfg_A 354 GRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQT-AMHNAMD-YSSYEGHKVKGVPKTVLLRG 431 (457)
T ss_dssp TSSCHHHHHHHHTHHHHHHTTCTTTSSSCSTTSBCCEEEEEEEEEEECCGG-GSCSSCS-CCTTTTCEEEEEEEEEEETT
T ss_pred CCCCHHHHHHHHhhhHHHHhCCCCCCcCcCCCCccCEEEEeCCCCEEecHH-HccCCCC-CCCccCCEecceEEEEEECC
Confidence 5699999999999999999999 5799999999999999999988888877 7788887 99999999999999999999
Q ss_pred EEEEEcCcccCCCC-CccccC
Q 015182 391 NLVYKEGNHAPAAC-GSPILA 410 (411)
Q Consensus 391 ~~v~~~g~~~~~~~-g~~~~~ 410 (411)
++||++|+++..+. |++|+.
T Consensus 432 ~~v~~~g~~~~~~~~G~~~~~ 452 (457)
T 1nfg_A 432 KVIVDEGSYVGEPTDGKFLKR 452 (457)
T ss_dssp EEEEETTEECCCTTSCCBCCC
T ss_pred EEEEECCccccCCCCCeeeCC
Confidence 99999999987655 998874
|
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=379.09 Aligned_cols=321 Identities=19% Similarity=0.201 Sum_probs=260.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCc-eEEEEEee--ecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY-VDVGFWGG--LVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 77 (411)
+||+||+|+|+++ |.+. +...+|+++||||+++|| |+.|+.++.+.++.++++++.... ++|.++++ +++
T Consensus 27 lPG~ID~HvHlre-G~~~-----~e~~aA~aGG~Ttvi~mP-nt~P~~~~~~~~~~~~~~a~~~~~~vd~~~~~~l~lt~ 99 (359)
T 3pnu_A 27 LKNPLDMHLHLRD-NQML-----ELIAPLSARDFCAAVIMP-NLIPPLCNLEDLKAYKMRILKACKDENFTPLMTLFFKN 99 (359)
T ss_dssp EESCEEEEECCCS-HHHH-----HHHHHHHHTTCSEEEECC-CCSSCCCSHHHHHHHHHHHHHHHTTSCCEEEEEEECSC
T ss_pred ccCcEEccccCCC-CCcc-----hhHHHHHhCCCcEEEECC-CCCCCCCcHHHHHHHHHHHhccCCCceEEEeeeeEecC
Confidence 6999999999998 6433 445688999999999999 999999999999988777665555 89999887 763
Q ss_pred CCccchHHHHHHHHCCceEEEEeccCCC---CCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 78 ENAYNASALEALLNAGVLGLKSFMCPSG---INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 78 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
. ..+++.++.+. +.++|+|+.+.. ..+.+..+.+.++++++++++.|+++.+||++.+.+..
T Consensus 100 ~---~~~el~~l~~~-v~~~Kl~~aga~~~s~~~~~~~~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~~----------- 164 (359)
T 3pnu_A 100 Y---DEKFLYSAKDE-IFGIKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMD----------- 164 (359)
T ss_dssp C---CHHHHHHHTTT-CSEEEECBTTSSSSCTTSBCCCCHHHHHHHHHHHHHTTCCEEECCCCSSCGGG-----------
T ss_pred C---CHHHHHHHHHh-hhehhheeCCCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEecCCchHhHH-----------
Confidence 3 33466676666 889999997531 12334458899999999999999999999998764221
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
.|..++.+++.++++. .|.|+|++|+|+. +++++|+.+ .+|+|++|||||++++++
T Consensus 165 -------------~E~~ai~r~~~la~~~------~g~~lhi~HvSt~-~~v~~I~~A----~~VtaEv~phhL~lt~~~ 220 (359)
T 3pnu_A 165 -------------RESNFAKIYEKLAKHF------PRLKIVMEHITTK-TLCELLKDY----ENLYATITLHHLIITLDD 220 (359)
T ss_dssp -------------TTGGGHHHHHHHHHHC------TTSCEEECSCCSH-HHHHHHHHC----TTEEEEECSGGGTCCHHH
T ss_pred -------------HHHHHHHHHHHHHHHc------CCCcEEEEecCcH-HHHHHHHhc----CCceEEEechhhEEcHHH
Confidence 1224577778887642 3899999999999 899999876 679999999999999887
Q ss_pred cC--CCCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh
Q 015182 235 IP--DGDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 311 (411)
Q Consensus 235 ~~--~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~-~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (411)
+. .+++..+++||+|+.+++++||++|.+|.++ +|+|||+|++..+|.. ++ .+.|+.+.+..++.+++.. +
T Consensus 221 ~~~~~~~~~~k~~PPLR~~~dr~aL~~al~dG~id~~iaTDHaPh~~~eK~~---~~--g~~Gi~~~~~~L~l~~~~~-~ 294 (359)
T 3pnu_A 221 VIGGKMNPHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKEC---CG--CAAGVFSAPVILPVLAELF-K 294 (359)
T ss_dssp HHTSSCCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCBC---------C--CCSCBCCGGGHHHHHHHHH-H
T ss_pred hcCcCCCCceEEcCCCCCHHHHHHHHHHHhcCCCCEEEecCCCCCCHHHhCC---CC--CCCChhhHHHHHHHHHHHH-h
Confidence 64 3578899999999999999999999999999 7999999999877742 33 4668887778888888755 4
Q ss_pred cCCCHHHHHHHHhHhHHHHhCCC-CCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCcc-CCceEEeEEE
Q 015182 312 YGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL 384 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~~-~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~~~v~ 384 (411)
++++++++++.+|.|||++||++ ++ | |||+||| .+|+++.+ .+++++. |+|| +|.+++|+|.
T Consensus 295 ~~~~l~~lv~~~s~nPAki~gL~~~~-----G--Adlvl~d--~~~~v~~~-~~~s~~~-~tPf~~G~~l~G~v~ 358 (359)
T 3pnu_A 295 QNSSEENLQKFLSDNTCKIYDLKFKE-----D--KILTLEE--KEWQVPNV-YEDKYNQ-VVPYMAGEILKFQLK 358 (359)
T ss_dssp HHSCHHHHHHHHTHHHHHHHTCCCSS-----C--CEEEEEC--CCEECCSC-EECSSCE-ECCTTTTCEESCEEC
T ss_pred hcCCHHHHHHHHHHhHHHHhCCCCCC-----C--CeEEEEe--cCEEeCch-hcccCCC-ccccCCCCEEEEEEe
Confidence 45799999999999999999994 34 4 9999999 68999988 8888888 9999 9999998885
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-49 Score=381.24 Aligned_cols=376 Identities=30% Similarity=0.408 Sum_probs=292.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-C
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-N 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (411)
+|||||+|+|+..++..+.+++...++.++++||||+++++ ++.+.....+.++...+..+....+++.++.++.+. .
T Consensus 48 ~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (426)
T 2z00_A 48 APGFLDLHAHLREPGEEVKEDLFSGLLAAVRGGYTDLVSMP-NTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQE 126 (426)
T ss_dssp EECEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSBGGGC
T ss_pred ecCEEEeccccCCCCCCchHHHHHHHHHHHhCCccEEEecC-CCCCCcChHHHHHHHHHHhcccCcccEEEEEEeecCCC
Confidence 69999999999887766678888999999999999999998 555555556677666555443333555444333321 1
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++.++.+.|+.+++. ++....+.++++++++.|+++|+++.+|+.+...+...+.+ .+......
T Consensus 127 ~~~~~~~~~l~~~g~~~i~~-------~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~----~g~~~~~~ 195 (426)
T 2z00_A 127 GKTLTPAGLLREAGAVLLTD-------DGRTNEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMN----DGPLADLL 195 (426)
T ss_dssp SSSBCCHHHHHHHTCCEEEC-------TTSCCCCHHHHHHHHHHHGGGTCCEEECCCCHHHHTTCSEE----CSHHHHHH
T ss_pred hhhHHHHHHHHHcCCEEEEC-------CCcCCCCHHHHHHHHHHHHhhCCEEEEeCCCHHHHhhhhhc----cCccchhc
Confidence 12344566666668877763 12235689999999999999999999999987653311111 11223334
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhh-ccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDT-RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~ 238 (411)
+...+|...|..++.++++++.+. ...+ .+.+++++|++.. +++++++++++.|+.+++++||++++++.+.+...
T Consensus 196 g~~~~~~~~e~~~~~~~~~~a~~~~~~~~--~g~~~~i~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~ 272 (426)
T 2z00_A 196 GLPGNPPEAEAARIARDLEVLRYALRRSP--ATPRLHVQHLSTK-RGLELVREAKRAGLPVTAEATPHHLTLTEEALRTF 272 (426)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHHHCS--SCCCEEETTCCCH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGGGC
T ss_pred ccccCChHHHHHHHHHHHHHHhhcccccc--CCCcEEEEeCCCH-HHHHHHHHHHHcCCCEEEEEchHHhEeCHhHhhcc
Confidence 456678888887888888777650 0000 2788999999987 78899999999999999999999998876655445
Q ss_pred CcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHH
Q 015182 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLE 317 (411)
Q Consensus 239 ~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~~ 317 (411)
+...++.||+|...++..+|+++.+|++++++||++|+....| .++|+.+|.|+.+.+..++.++..+ ...++|++
T Consensus 273 ~~~~~~~~plr~~~~~~~l~~~l~~G~~~~lgsD~~p~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ls~~ 349 (426)
T 2z00_A 273 DPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAEK---EKDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQ 349 (426)
T ss_dssp CGGGCCSSCCCCHHHHHHHHHHHHHTSSCEECCCBCCCCTTGG---GSCTTTSCCCBCCTTTHHHHHHHHTHHHHCCCHH
T ss_pred CceEEEeCCCCCHHHHHHHHHHHhCCCcEEEecCCCCCCHHHc---cCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHH
Confidence 5666788999999999999999999999999999999876554 2578888999998888888776643 34579999
Q ss_pred HHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 318 QLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 318 ~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
++++++|.|||++||++ +|+|++||+|||||||+ .+|.++.+ ++.++.. ++||.|..+.++|.+||++|++||+++
T Consensus 350 ~~l~~~T~n~A~~lgl~-~G~l~~G~~ADlvv~d~-~~~~~~~~-~~~~~~~-~~p~~g~~~~~~v~~t~v~G~~v~~~~ 425 (426)
T 2z00_A 350 RLVELFTDGPRRVLGLP-PLHLEEGAEASLVLLSP-KERPVDPS-AFASKAR-YSPWAGWVLGGWPVLTLVAGRIVHEAL 425 (426)
T ss_dssp HHHHHHTHHHHHHHTCC-CCCSSTTSBCCEEEEEC-CCEECCGG-GCSSSCC-CCTTTTCEECCEEEEEEETTEEEEECC
T ss_pred HHHHHHhhhHHHHhCCC-cccccCCCCCCEEEEeC-CcEEEcHH-HccccCC-CCCcCCCEEEEEEEEEEECCEEEEecC
Confidence 99999999999999997 99999999999999999 58888887 7877777 999999999999999999999999987
Q ss_pred c
Q 015182 398 N 398 (411)
Q Consensus 398 ~ 398 (411)
+
T Consensus 426 ~ 426 (426)
T 2z00_A 426 K 426 (426)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-48 Score=385.51 Aligned_cols=392 Identities=23% Similarity=0.301 Sum_probs=309.3
Q ss_pred CCceeecccccCCCCC--CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~--~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|+..+.. ...++++.+++.++++||||++|+. ...+.....+.++.....+.....++++++......
T Consensus 82 ~PG~ID~H~Hl~~~~~~~~~~e~~~~~~~~al~~GvTtv~d~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~ 160 (541)
T 2vr2_A 82 LPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFA-IPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWW 160 (541)
T ss_dssp EECEEEEEECTTCBCSSSBCSCCTTHHHHHHHTTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHTTTCSSEEEEEEEECSC
T ss_pred ccCEEEecccCCCCCCCCcCHHHHHHHHHHHHhCCeeeecccc-CCCCCCCHHHHHHHHHHHhccCceEEEeeeecccCC
Confidence 6999999999987642 3568888999999999999999986 333333334566655554444556677776554433
Q ss_pred CccchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh---hhhccCcCCc
Q 015182 79 NAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH---VKLEDDTLDT 154 (411)
Q Consensus 79 ~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~---~~~~~~~~~~ 154 (411)
+.+.++++.++.+ .|+.++|+|+++.+ ...+++++++++++.|+++|+++.+|+++...+... +.+.| .
T Consensus 161 ~~~~~~el~~l~~~~G~~~~k~~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G----~ 233 (541)
T 2vr2_A 161 SDQVKEEMKILVQDKGVNSFKMFMAYKD---LYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALG----I 233 (541)
T ss_dssp SHHHHHHHHHHHHTSCCCEEEEESSSTT---TTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeccCC---ccCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcC----C
Confidence 3334556666664 69999999987642 235789999999999999999999999876433222 22222 1
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
.....+...+|...|..++.+.+.++... +.++|+.|+++. ..++.++.+++.|+.++++++|+++.++...
T Consensus 234 ~~~~~h~~~~~~~~e~~a~~~~~~la~~~-------~~p~~~~h~ss~-~~~~~i~~ar~~G~~v~~e~~~~~L~~d~~~ 305 (541)
T 2vr2_A 234 TGPEGHELCRPEAVEAEATLRAITIASAV-------NCPLYIVHVMSK-SAAKVIADARRDGKVVYGEPIAASLGTDGTH 305 (541)
T ss_dssp CSTHHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEEEEECCH-HHHHHHHHHHHTTCCEEEEEBHHHHHCCSGG
T ss_pred CChhhccccchhHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHHcCCeEEEEeehhhhcCCHHH
Confidence 11222345678888887888888878766 888999999987 7889999999999999999999998877653
Q ss_pred cCC----CCcceEEcCCCCC-hhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH
Q 015182 235 IPD----GDTRFKCAPPIRD-AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 309 (411)
Q Consensus 235 ~~~----~~~~~~~~p~lr~-~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 309 (411)
+.. .+...++.||+|. ..+++.+|+++.+|.+++++|||+|+...+|....++|...|.|++|.+.+++.++...
T Consensus 306 ~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~g~~~~~gtD~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~ 385 (541)
T 2vr2_A 306 YWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKG 385 (541)
T ss_dssp GGCSSHHHHHTTCCSSCCCSCTTHHHHHHHHHHTTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHH
T ss_pred hcCccccccCceEECCCCCCCcchHHHHHHHHhcCCeEEEEeCCCCCChHHhcccCCChhhCCCCCccHHHHHHHHHHHH
Confidence 321 1233467899997 56788999999999999999999999887776655689999999999999888887765
Q ss_pred Hhc-CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 310 RKY-GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 310 ~~~-~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
.+. +++++++++++|.|||++||+ +++|+|++|++|||||||++..+.++.+ .++++.. |+||+|.++.++|..||
T Consensus 386 v~~~~l~~~~~~~~~T~~pA~~lgl~~~~G~i~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~p~~g~~~~g~v~~v~ 463 (541)
T 2vr2_A 386 VHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAK-THHQAVN-FNIFEGMVCHGVPLVTI 463 (541)
T ss_dssp TTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEEEECCTT-TCSSSCS-CCTTTTCEEEEEEEEEE
T ss_pred HHcCCCCHHHHHHHHhHHHHHHhCCCCCCCccCCCCCCCEEEEcCCcCeEeCHH-HhhcccC-CCccCCCEEeeeEEEEE
Confidence 544 599999999999999999999 6799999999999999999988888887 7788887 99999999999999999
Q ss_pred ECCEEEEEcCcccC-CCCCccccC
Q 015182 388 SRGNLVYKEGNHAP-AACGSPILA 410 (411)
Q Consensus 388 ~~G~~v~~~g~~~~-~~~g~~~~~ 410 (411)
++|++||++|+++. ...|++|+.
T Consensus 464 v~G~~v~~~g~~~~~~~~G~~~~~ 487 (541)
T 2vr2_A 464 SRGKVVYEAGVFSVTAGDGKFIPR 487 (541)
T ss_dssp ETTEEEEETTEECCCTTCSCBCCC
T ss_pred ECCEEEEECCeeccCCCCceEecC
Confidence 99999999999984 467998864
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=382.42 Aligned_cols=384 Identities=27% Similarity=0.358 Sum_probs=306.8
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
+|||||+|+|+..++..++++++.+++.++++||||++|++ ++.|.....+.++.+.+.......+++.++.+.++.
T Consensus 59 ~PGlID~H~H~~~~~~~~~e~~~~~~~~~~~~GvTt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (452)
T 2gwn_A 59 FPGCIDDQVHFREPGLTHKATIASESRAAVAGGVTSFMDMP-NTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTND-- 135 (452)
T ss_dssp EECEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEECEECCSS--
T ss_pred ecCEEeeccccCCCCCCcHHHHHHHHHHHHhCCeEEEEcCC-CCCCCCChHHHHHHHHHHhhccCcccEEEEEeecCC--
Confidence 69999999999987766788899999999999999999998 777766777888877666655677888887765543
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhh----hhccCcCCccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV----KLEDDTLDTRS 156 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~----~~~~~~~~~~~ 156 (411)
..+++.++.+.|+.++|+++++.. .+++..+.+.+++.++ +.+.++.+|+++...+...+ ...|.. .+
T Consensus 136 -~~~~i~~~~~~g~~g~k~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~G~~---~~ 207 (452)
T 2gwn_A 136 -NIDEIKRVDKHLVPGLKLFLGSST-GNMLVDNKETLEKIFG---ECDLLIATHCEKEEIIRANKEHYKAKYGND---LD 207 (452)
T ss_dssp -CHHHHHTCCTTSCSCEEEESSSCC-GGGBCCCHHHHHHHHH---HCCSCEEEECCCHHHHHHHHHHHHHHHCSC---CC
T ss_pred -CHHHHHHHHHcCCCEEEEEeccCC-CCcccCCHHHHHHHHH---HcCCEEEEcCCCHHHHHhHHhhhhhhcCcc---cc
Confidence 234455555568899999987642 1233345677776655 45889999998865544322 111100 11
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHH---HhHCCCCEEEEccccccccccc
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLME---AKTNGDSITVETCPHYLAFSAE 233 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~---~~~~g~~i~~~~~p~~l~~~~~ 233 (411)
...+...+|..++...+.++++++++. +.++|++|+++. +.++.++. .++. +++++++||+++++++
T Consensus 208 ~~~h~~~~~~~~~~~~l~~~~~la~~~-------g~~v~i~H~~~~-~~~~~~~~~~a~~~~--~v~~~~~~h~~~l~~~ 277 (452)
T 2gwn_A 208 IHFHPLIRSEEACYRSSAEAVELAERM-------NARLHILHLSTE-KELSLFRNDIPTAQK--RITSEVCVHHLWFSDT 277 (452)
T ss_dssp GGGHHHHSCHHHHHHHHHHHHHHHHHH-------TCCEEECCCCCT-GGGGGSCCSSCGGGC--SEEEEEEHHHHHCCGG
T ss_pred hhhccccCChHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHhhcccCC--CeEEEEchHHhhcCHH
Confidence 222345678888888999999999887 889999999976 67777765 2443 5789999999999887
Q ss_pred ccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcC
Q 015182 234 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 313 (411)
Q Consensus 234 ~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 313 (411)
++...+...+++||+|...+...+++++++|+++++|||+.|++...|. .+|+.++.|+++++++++.+++...+.+
T Consensus 278 ~~~~~g~~~~~~P~lr~~~~~~~l~~~l~~Gv~~~lgTD~~~~~~~~k~---~~~~~~~~g~~~~e~~~~~~~~~~~~~~ 354 (452)
T 2gwn_A 278 DYGRLGNRIKWNPAIKKESDREALRAAVRNGRIDIIATDHAPHLLREKE---GSCLQAASGGPLVQHSLLALLELCNQGI 354 (452)
T ss_dssp GHHHHGGGGCCSSCCCCHHHHHHHHHHHHHSSSCEEECCBCCCCHHHHC---SCTTTSCCCCCCTTTHHHHHHHHHHTTS
T ss_pred HHhccCceEEECCCCCCHHHHHHHHHHHHCCCceEEEeCCCCCChHHhc---CChhhCCCCCccHHHHHHHHHHHHHcCC
Confidence 6644466677889999888899999999999999999999988876553 4788899999999988887776555678
Q ss_pred CCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 314 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
++++++++++|.|||++||++++|+|++|++|||||||++.++.++.+ ++.++.. |+||+|.++.++|..||++|++|
T Consensus 355 ls~~~~l~~~T~~~A~~lgl~~~G~l~~G~~ADlvv~d~~~~~~~~~~-~~~~~~~-~~~~~g~~~~~~v~~v~v~G~~v 432 (452)
T 2gwn_A 355 FSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSAD-NILSLCG-WSPFEGFTFSHSVAYTFVNGCLA 432 (452)
T ss_dssp SCHHHHHHHHTHHHHHHHTBTTCSSCCTTSBCCEEEEETTSCEECCTT-TCCSTTC-CCTTTTCEESCEEEEEEETTEEE
T ss_pred CCHHHHHHHHhHhHHHHcCCCCCCcccCCCcCCEEEEcCCCCeEECHH-HccccCC-CCCCCCcEEeeeEEEEEECCEEE
Confidence 999999999999999999996689999999999999999988999888 8888888 99999999999999999999999
Q ss_pred EEcCcccCC-CCCccccC
Q 015182 394 YKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 394 ~~~g~~~~~-~~g~~~~~ 410 (411)
|++|+++.+ +.|+.|++
T Consensus 433 ~~~g~~~~~~~~G~~~~~ 450 (452)
T 2gwn_A 433 YAKGRLAESRPTVHPLFF 450 (452)
T ss_dssp EETTEECSSCCCCCBCCB
T ss_pred EECCeeccCCCCceeeCC
Confidence 999999876 78999875
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=379.10 Aligned_cols=395 Identities=24% Similarity=0.290 Sum_probs=304.8
Q ss_pred CCceeecccccCCCC--CCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPG--RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~--~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (411)
+|||||+|+|+..+. ..+.++++..++.++++||||++|++ ++.+.....+.++...+.......++++++......
T Consensus 77 ~PGlID~H~H~~~~~~~~~~~e~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 155 (501)
T 2vm8_A 77 IPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHV-VPEPGTSLLAAFDQWREWADSKSCCDYSLHVDISEW 155 (501)
T ss_dssp EECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE-CCCTTSCHHHHHHHHHHHHHHHCSSEEEEEEECCSC
T ss_pred eeCEEEeeecccccccCCCcHHHHHHHHHHHHhCCcEEEEeCC-CCCCCCChHHHHHHHHHHHhcCCeeEEEEEEEecCC
Confidence 699999999997653 23568888999999999999999987 544433434556655544433345566665443222
Q ss_pred CccchHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 79 NAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 79 ~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
....++++.++. +.|+.++|+|+.+.. + ...+.++++++++.|+++|+++.+|+++...+...+...- ..+....
T Consensus 156 ~~~~~~e~~~l~~~~G~~~i~~~~~~~~--~-~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~-~~G~~~~ 231 (501)
T 2vm8_A 156 HKGIQEEMEALVKDHGVNSFLVYMAFKD--R-FQLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRIL-DLGITGP 231 (501)
T ss_dssp SHHHHHHHHHHHHHSCCCEEEEESSSTT--T-TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHH-TTTCCST
T ss_pred CcccHHHHHHHHHhCCceEEEEeeccCC--C-CCCCHHHHHHHHHHHHHhCCEEEEEccChHHHHHHHHHHH-hcCCCCh
Confidence 223345666666 479999999987642 2 3568899999999999999999999997643322221100 1122223
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..+...+|...+..++.+.+.++... +.++|+.|++.. ..+++++.+++.|+.++++++|++++++...+..
T Consensus 232 ~~~~~~~~~~~~~~~i~~~~~l~~~~-------g~~~hi~h~~~~-~~~~~i~~~~~~G~~v~~~~~~~~l~~~~~~~~~ 303 (501)
T 2vm8_A 232 EGHVLSRPEEVEAEAVNRAITIANQT-------NCPLYITKVMSK-SSAEVIAQARKKGTVVYGEPITASLGTDGSHYWS 303 (501)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHH-------TCCEEEEEECCH-HHHHHHHHHHHTTCCEEEEEBHHHHHCCGGGGGC
T ss_pred hhccccCCHHHHHHHHHHHHHHHHHh-------CCcEEEEeCCcH-HHHHHHHHHHhCCCcEEEEEChhHhhcChhhhcc
Confidence 34445678888877888888888766 889999999987 7799999999999988888999988887654322
Q ss_pred C----CcceEEcCCCCCh-hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh-
Q 015182 238 G----DTRFKCAPPIRDA-ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK- 311 (411)
Q Consensus 238 ~----~~~~~~~p~lr~~-~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 311 (411)
. +...++.||+|.. .....+|+++.+|+++++|||+.|++...+....++|...|.|+.+.+..++.+++.+.+
T Consensus 304 ~~~~~~~~~~~~pp~r~~~~~~~~l~~~l~~G~~~~~gtD~~~~~~~~~~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~ 383 (501)
T 2vm8_A 304 KNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVT 383 (501)
T ss_dssp SSHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTT
T ss_pred cccccCceEEECCCCCCCcchHHHHHHHHhcCceEEEEecCCCCChhhhhcccCChhhCCCCCccHHHHHHHHHHHHHHc
Confidence 1 1234567999865 467889999999999999999999887666544557777888999998888887765554
Q ss_pred cCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECC
Q 015182 312 YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 390 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G 390 (411)
.+++++++++++|.|||+++|+ +++|+|++|++|||||||++.++.++.. .+.++.. |+||.|....+.|..||++|
T Consensus 384 ~~l~~~~~l~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~-~~~s~~~-~~~~~g~~~~~~v~~v~v~G 461 (501)
T 2vm8_A 384 GKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAK-THNSSLE-YNIFEGMECRGSPLVVISQG 461 (501)
T ss_dssp TSSCHHHHHHHHTHHHHHHHTCTTTSSCCCTTSBCCEEEEEEEEEEECCTT-TSSSSCS-CCTTTTCEEEEEEEEEEETT
T ss_pred CCCCHHHHHHHHhHhHHHHhCCCCCCCccCCCCcCCEEEEcCCCCeeeccc-ccccccc-CCCccCcEeCceEEEEEECC
Confidence 4699999999999999999999 6799999999999999999988888887 7788888 99999999999999999999
Q ss_pred EEEEEcCccc-CCCCCccccC
Q 015182 391 NLVYKEGNHA-PAACGSPILA 410 (411)
Q Consensus 391 ~~v~~~g~~~-~~~~g~~~~~ 410 (411)
++||++|+++ ..+.|+.|+.
T Consensus 462 ~~v~~~g~~~~~~~~G~~l~~ 482 (501)
T 2vm8_A 462 KIVLEDGTLHVTEGSGRYIPR 482 (501)
T ss_dssp EEEEETTEECCCTTCCCBCCC
T ss_pred EEEEECCeEccCCCCCceecC
Confidence 9999999998 5577999875
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-46 Score=365.73 Aligned_cols=367 Identities=29% Similarity=0.451 Sum_probs=254.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-C
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-N 79 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (411)
+|||||+|+|+..++..+.+++...++.++++||||+++++ ++.+.....+.++...+..+....+++.+...+.+. .
T Consensus 99 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ 177 (467)
T 1xrt_A 99 CPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRK 177 (467)
T ss_dssp EECEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGC
T ss_pred ccCEEEEeecccCCCCCchhhHHHHHHHHHhCCeEEEEecC-CCCCCCChHHHHHHHHHHhcccCcceEEEEeeecCCCC
Confidence 69999999999877666778888999999999999999998 555544556667666555443334566554433321 1
Q ss_pred ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 80 AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 80 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
.+.+.++.++.+.|+.+++. .+....+.++++++++.|+++|+++.+|+.+...+...+ + .+.....+
T Consensus 178 ~~~~~~~~~l~~~g~~~i~~-------~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~~~~~l-~----~g~~~~~~ 245 (467)
T 1xrt_A 178 GKEIADFYSLKEAGCVAFTD-------DGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVI-N----EGEVSALL 245 (467)
T ss_dssp SSSBCCHHHHHHHTCCCBCC-------TTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC-----------------
T ss_pred cccHHHHHHHHHcCCEEEEc-------CCCCCCCHHHHHHHHHHHHhcCCEEEEECCCHHHHHHHH-h----cCccchhc
Confidence 12344566666667655432 122356889999999999999999999998866543111 1 11222233
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~ 239 (411)
+...+|...|...+.+.+.++... +.++|+.|++.. ++++++++++++|+.+++++||++++++.+.+...+
T Consensus 246 g~~~~~~~~e~~~~~~~~~~~~~~-------g~~~hi~H~~~~-~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~ 317 (467)
T 1xrt_A 246 GLSSRAPEAEEIQIARDGILAQRT-------GGHVHIQHVSTK-LSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSG 317 (467)
T ss_dssp --------CHHHHHHHHHHHHHHH-------CCEEEESCCCSH-HHHHHHHHHHHTTCCEEEEECGGGGC----------
T ss_pred ccccCChHHHHHHHHHHHHHHHHh-------CCCEEEEeCCCH-HHHHHHHHHHhcCCcEEEeccHHHHhcCHhHhhccC
Confidence 344556566666666666666655 889999999987 679999999999999999999999888766554445
Q ss_pred cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcC-CCHHH
Q 015182 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQ 318 (411)
Q Consensus 240 ~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-l~~~~ 318 (411)
...++.||+|...+...+++++++|+++++|||+.|++...| +.|...+.|+++.+..++..++ ..+.+ +++++
T Consensus 318 ~~~~~~pplr~~~~~~~l~~~l~~Gv~~~lgTD~~~~~~~~~----~~~~~~~~g~~g~e~~l~~~l~-~~~~g~ls~~~ 392 (467)
T 1xrt_A 318 ANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK----ELVEFAMPGIIGLQTALPSALE-LYRKGIISLKK 392 (467)
T ss_dssp ------------CCHHHHHHHHHHTCSCEECCCBCCCCC---------------CCCCGGGHHHHHHH-HHHTTSSCHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHhCCceEEEeeCCCCCChhHh----cccccCCCCCccHHHHHHHHHH-HHHcCCCCHHH
Confidence 566788999988888999999999999999999988865443 2366778899998888877766 55666 99999
Q ss_pred HHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 319 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 319 al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+++++|.|||++||++ +|+|++||.|||||||.+.++.++.+ ++.++.. ++||.|....++|..||++|++||+|
T Consensus 393 al~~aT~n~A~~lgl~-~G~I~~G~~ADlvvld~~~~~~i~~~-~~~~~~~-~~p~~g~~~~~~V~~viv~G~~v~~~ 467 (467)
T 1xrt_A 393 LIEMFTINPARIIGVD-LGTLKLGSPADITIFDPNKEWILNEE-TNLSKSR-NTPLWGKVLKGKVIYTIKDGKMVYKD 467 (467)
T ss_dssp HHHHHTHHHHHHHTCS-CSCCCTTSBCCEEEEEEEEEEECSTT-TCCSSCC-CCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred HHHHhccCHHHHhCCC-cccccCCCCCCEEEEeCCCCEEEChH-HccCcCC-CCCccCCEEeEEEEEEEECCEEEecC
Confidence 9999999999999998 99999999999999999988888887 7877777 99999998999999999999999975
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=352.57 Aligned_cols=327 Identities=17% Similarity=0.184 Sum_probs=259.5
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCc--eEEEEEeeecCC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY--VDVGFWGGLVPE 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (411)
+||+||+|+|+++ |.+. +++++++++||||++||| |+.|..++.+.+..+.+.++.... +++.++++++..
T Consensus 9 ~PG~ID~HvH~~~-g~~~-----~e~~aa~~gGvTtvv~mp-nt~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (347)
T 2z26_A 9 IRRPDDWHLHLRD-GDML-----KTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLT 81 (347)
T ss_dssp EECCCEEEECCCS-HHHH-----HHHHHHHHTTCSEEEECC-CCSSCCCSHHHHHHHHHHHHHTSCTTCCCEEEEEEECC
T ss_pred CCCcceeeecCCC-CCch-----hhHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHHhcccCCcccEEEEEEEEeC
Confidence 6999999999998 6443 456889999999999999 999998988888887776655433 455555554221
Q ss_pred CccchHHHHHHHHCCc-eEEEEeccCCCCC-CCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 79 NAYNASALEALLNAGV-LGLKSFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~-~~ik~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
....+++|..+.+.|+ .++|+|+.+...+ +++..+.+.|+++++++++.|+++.+|+++.... .
T Consensus 82 ~~~~~~ei~~l~~~G~~~g~K~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~----------~---- 147 (347)
T 2z26_A 82 DSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHAD----------I---- 147 (347)
T ss_dssp TTCCHHHHHHHHHTTSEEEEEECCCCTTCCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCTT----------S----
T ss_pred CCCCHHHHHHHHHCCCeEEEEEeecCCcCCCCCccCCHHHHHHHHHHHHHhCCEEEEEecCCccc----------c----
Confidence 1123667888888998 8999999875322 3445688999999999999999999999976410 0
Q ss_pred cccccCCCCHHHHHHHHHHHH--HHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 157 YSTYLKTRPPSWEEAAIRELL--TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
.+..+|..++.+.+ .+++. .+.++|++|+++. +.+++++.++ .+|++++||||+++++++
T Consensus 148 -------~~~~~E~~~~~~~i~~~la~~-------~~~~~hi~Hvst~-~~~~~i~~ak---~~Vt~e~~ph~L~l~~~~ 209 (347)
T 2z26_A 148 -------DIFDREARFIESVMEPLRQRL-------TALKVVFEHITTK-DAADYVRDGN---ERLAATITPQHLMFNRNH 209 (347)
T ss_dssp -------CGGGHHHHHHHHTHHHHHHHS-------TTCCEEECSCCSH-HHHHHHHTSC---TTEEEEECHHHHHCCHHH
T ss_pred -------CHHHHHHHHHHHHHHHHHHhh-------cCCcEEEEECCcH-HHHHHHHHhC---CCceEeecchHheecHHH
Confidence 01123555566666 35553 3899999999998 8999998775 479999999999999877
Q ss_pred cCC--CCcceEEcCCCCChhhHHHHHHHHhcCCcc-EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh
Q 015182 235 IPD--GDTRFKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 311 (411)
Q Consensus 235 ~~~--~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~-~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (411)
+.. .+...+++||||+..++++||+++.+|.++ +|+|||+|+....|.. ++. +.|+.+++..++.+++.. +
T Consensus 210 ~~~~~~~~~~k~~PPLR~~~d~~aL~~~l~~G~id~~i~SDhaP~~~~~K~~---~~g--~~Gi~~~e~~l~l~~~~~-~ 283 (347)
T 2z26_A 210 MLVGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKES---SCG--CAGCFNAPTALGSYATVF-E 283 (347)
T ss_dssp HHTTSBCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSS---SSB--CCCCCCTTTHHHHHHHHH-H
T ss_pred hcCcCCCccEEEeCCCCCHHHHHHHHHHHhcCCCCeEEecCCCCCCHHHhcC---CCC--CCCcCcHHHHHHHHHHHh-h
Confidence 643 678889999999999999999999999999 8999999999877642 332 467888899999888744 5
Q ss_pred cCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCcc-CCceEEeEEE
Q 015182 312 YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVL 384 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~-~g~~~~~~v~ 384 (411)
.+++++++++++|.|||++||+ +++|+| +|| +..|+++.+ .+++++. |+|| +|.+++|+|.
T Consensus 284 ~~~sl~~~v~~~s~nPAki~gl~~~kG~i--------~l~--~~~~~v~~~-~~~s~~~-~sPf~~G~~l~g~v~ 346 (347)
T 2z26_A 284 EMNALQHFEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAES-IALTDDT-LVPFLAGETVRWSVK 346 (347)
T ss_dssp HTTCGGGHHHHHHTHHHHHHTCCCCCCEE--------EEE--CCCEECCSC-EECSSSE-ECCTTTTCEESCEEC
T ss_pred cCCCHHHHHHHHhHhHHHHhCCCCCCCeE--------EEE--cceEEEchh-hccccCC-cccccCCcEEEeEEe
Confidence 6799999999999999999999 468875 677 567999888 8889888 9999 7999998875
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=304.07 Aligned_cols=340 Identities=20% Similarity=0.229 Sum_probs=238.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEec---------CCCCCCCCCCC---------HHHHHHHHHHH-
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID---------MPLNSDPSTIS---------TETLKLKVDAA- 61 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d---------~~~~~~~~~~~---------~~~~~~~~~~~- 61 (411)
+|||||+|+|+........ +...++++||||+++ ++ ++.+..+. ++.+..+.+..
T Consensus 59 ~PG~iD~H~H~~~~~~~~~-----~~~~~~~~G~Tt~~~g~cG~~~~p~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 132 (480)
T 3gip_A 59 APGFIDVHGHDDLMFVEKP-----DLRWKTSQGITTVVVGNCGVSAAPAP-LPGNTAAALALLGETPLFADVPAYFAALD 132 (480)
T ss_dssp EECEEESSCCCTTHHHHST-----TCHHHHTTTEEEEEECCTTCCSCSCC-CTTCCCGGGGGTCSSCCCSSHHHHHHHHH
T ss_pred ccCEEeccccccccccCCh-----hHHHHhcCCeeEEEecCCCcCCCCCC-cccchhhhhhhhccCccccCHHHHHHHHH
Confidence 5999999999754311111 124569999999998 33 33332111 12355554443
Q ss_pred hcCCceEEEEEeeec------------CCCccchHHHHHHH----HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 62 EKRIYVDVGFWGGLV------------PENAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 62 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~----~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
.....+++.++.+.. +.+.+++.+|.+++ +.|+.++|.++.|.. + ...+.+++.++++.++
T Consensus 133 ~~~~~~~~~~~~g~~~~r~~~~g~~~~~~~~~~l~~m~~l~~~~~~~Ga~g~~~~~~y~p--~-~~~~~~el~~~~~~a~ 209 (480)
T 3gip_A 133 AQRPMINVAALVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQAALEAGAVGFSTGLAYQP--G-AVAQAAELEGLARVAA 209 (480)
T ss_dssp HSCCSSEEEEEEEHHHHHHHHCSSTTSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSTT--G-GGCCHHHHHHHHHHHH
T ss_pred hCCCCceEEEccccHHHHHHhcCCcCCCCCHHHHHHHHHHHHHHHHCCCcEEeecCccCC--c-ccCCHHHHHHHHHHHH
Confidence 345678998876543 12334566776665 589999999987752 2 2357899999999999
Q ss_pred hCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC-----
Q 015182 126 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS----- 200 (411)
Q Consensus 126 ~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~----- 200 (411)
++|.++.+|+++.... +..++.+++.++++. |.++|++|++
T Consensus 210 ~~g~~v~~H~~~~~~~---------------------------~~~a~~e~i~la~~~-------g~~v~i~H~s~~~~~ 255 (480)
T 3gip_A 210 ERRRLHTSHIRNEADG---------------------------VEAAVEEVLAIGRGT-------GCATVVSHHKCMMPQ 255 (480)
T ss_dssp HTTCEEEEECSCSSTT---------------------------HHHHHHHHHHHHHHH-------CCEEEETTCCCCSGG
T ss_pred HcCCEEEEEecCcccc---------------------------HHHHHHHHHHHHHHh-------CCCEEEEEEeccCcc
Confidence 9999999999874321 124577788888876 8999999998
Q ss_pred ----ChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEc-------CCCCC-----------hhhHHHHH
Q 015182 201 ----DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCA-------PPIRD-----------AANKEKLW 258 (411)
Q Consensus 201 ----~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~-------p~lr~-----------~~~~~~l~ 258 (411)
.. +.+++++.++++|++++++++|+++.++...+.....+.++. ||++. ..+.+.++
T Consensus 256 ~~~~~~-~~l~~i~~a~~~G~~Vt~e~~p~~~~~t~~~l~~~~~~~~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~ 334 (480)
T 3gip_A 256 NWGRSR-ATLANIDRAREQGVEVALDIYPYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAAR 334 (480)
T ss_dssp GTTTHH-HHHHHHHHHHHTTCCEEEEECSCSCEEEECCGGGTTTSSCCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHH
T ss_pred chhhHH-HHHHHHHHHHHcCCceEEEeeccccCcchhhhcCHHHHHHHhhccccCCCccCCCcHHHHHHHcCCCHHHHHH
Confidence 35 789999999999999999999999988776655545555555 88743 22344444
Q ss_pred HH-----------------HhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh--cCCCHHHH
Q 015182 259 EA-----------------LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK--YGVTLEQL 319 (411)
Q Consensus 259 ~~-----------------l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~l~~~~a 319 (411)
+. +.++...++|||+.++.. ...+..+..++.++..+.. ..++++++
T Consensus 335 ~~l~~g~i~~~~~~~~~~~~~~~~~~~~gsD~~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 400 (480)
T 3gip_A 335 RLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDA--------------RPHPRLWGSFTRVLGRYVREARLMTLEQA 400 (480)
T ss_dssp HHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCS--------------SCCTHHHHHHHHHHHCCCCCTCSSCHHHH
T ss_pred HhccCCeEEEeCCHHHHHHHHcCCCeEEecCCcccCC--------------CCChhhhhhHHHHHHHHhhhcCCCCHHHH
Confidence 33 333455677788755421 1223445566666543332 45999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||+++|++++|+|++|++|||||||++..+. .. .+. .+ +++ .+.|.+||++|++||++|++
T Consensus 401 ~~~~t~~~a~~~g~~~~G~l~~G~~AD~vv~d~~~~~~--~~-~~~--~~-~~~------~~~v~~v~v~G~~v~~~g~~ 468 (480)
T 3gip_A 401 VARMTALPARVFGFAERGVLQPGAWADVVVFDPDTVAD--RA-TWD--EP-TLA------SVGIAGVLVNGAEVFPQPPA 468 (480)
T ss_dssp HHHHTHHHHHHHTCTTCSSCSTTSBCCEEEECTTTCBC--CC-CSS--ST-TCC------CBSEEEEEETTEEEESSCCS
T ss_pred HHHHHHHHHHHcCCCCCCccCCCCCCCEEEEcCccccC--cc-ccc--cc-ccc------CCCccEEEECCEEEEECCeE
Confidence 99999999999999668999999999999999986432 11 221 11 222 35699999999999999999
Q ss_pred cCCCCCccccCC
Q 015182 400 APAACGSPILAT 411 (411)
Q Consensus 400 ~~~~~g~~~~~~ 411 (411)
+. ++|+.||+.
T Consensus 469 ~~-~~G~~lr~~ 479 (480)
T 3gip_A 469 DG-RPGQVLRAG 479 (480)
T ss_dssp SS-CCCCBCCC-
T ss_pred cC-CCCcCcCCC
Confidence 99 899999863
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=277.80 Aligned_cols=340 Identities=18% Similarity=0.173 Sum_probs=223.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCC--CCCCCC-C---------------HHHHHHHHHHH-
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN--SDPSTI-S---------------TETLKLKVDAA- 61 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~--~~~~~~-~---------------~~~~~~~~~~~- 61 (411)
+|||||+|+|+..++... ...+.++++||||+++|+.+ ..|..+ . +..+....+..
T Consensus 73 ~PG~iD~H~H~~~~~~~~-----~~~~~~~~~G~Tt~~~~~~g~~~~p~~~~~l~~~i~~~~~~~~~~~~~~~~~~e~~~ 147 (496)
T 1rk6_A 73 SPGFIDSHTHDDNYLLKH-----RDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALR 147 (496)
T ss_dssp EECEEESSCCCTTHHHHC-----TTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHH
T ss_pred ecCEeeeeecCCcccccc-----HHHHHHHcCCeEEEEeCCCCCCCCCCChHHHHHhhcccCcccccCccCHHHHHHHHh
Confidence 599999999997643211 13578899999999998622 222210 0 12233333333
Q ss_pred hcCCceEEEEEeeec-----------C-CCccchHHHHHHH----HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 62 EKRIYVDVGFWGGLV-----------P-ENAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 62 ~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~----~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
.+...+++.++.+.. . ...+++.++..++ +.|+.+++.+..+.. + ...+.+++.++++.++
T Consensus 148 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~--~-~~~~~~el~~~~~~a~ 224 (496)
T 1rk6_A 148 AAPPAVNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPP--A-AHASTEEIIEVCRPLI 224 (496)
T ss_dssp HSCCSSEEEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGG--G-TTCCHHHHHHHHTHHH
T ss_pred ccCCccceEEecccccceeeeccccccCCCHHHHHHHHHHHHHHHHcCCcEEeeccccCC--C-CCCCHHHHHHHHHHHH
Confidence 234455665543210 0 1122344454444 579999887654321 1 2357789999999999
Q ss_pred hCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC-----
Q 015182 126 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS----- 200 (411)
Q Consensus 126 ~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~----- 200 (411)
++|.++.+|+++... ++..++.++++++++. |.++|++|++
T Consensus 225 ~~g~~v~~H~~~~~~---------------------------~~~~~l~~~~~~a~~~-------g~~v~i~H~~~~~~~ 270 (496)
T 1rk6_A 225 THGGVYATHMRDEGE---------------------------HIVQALEETFRIGREL-------DVPVVISHHKVMGKL 270 (496)
T ss_dssp HHTCEEEEECSCSST---------------------------THHHHHHHHHHHHHHH-------TSCEEECSCCCCSGG
T ss_pred HcCCEEEEEeCCCcc---------------------------cHHHHHHHHHHHHHHc-------CCeEEEEEEeccCCc
Confidence 999999999986432 1123466677777776 8899999994
Q ss_pred ----ChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC----cceEEcCCC--------------CChhhHHHHH
Q 015182 201 ----DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAPPI--------------RDAANKEKLW 258 (411)
Q Consensus 201 ----~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~----~~~~~~p~l--------------r~~~~~~~l~ 258 (411)
.. +.+++++.++..| .++++++|+++......++.+. .....+|+. +...+...+|
T Consensus 271 ~~g~~~-~~~~~l~~a~~~g-~v~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~p~~~~l~~~~l~~~~~~~g~~~~~~l~ 348 (496)
T 1rk6_A 271 NFGRSK-ETLALIEAAMASQ-DVSLDAYPYVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVP 348 (496)
T ss_dssp GTTTHH-HHHHHHHHHHHHS-CEEEEECSCSCEEEECCCCTTTTSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHH
T ss_pred chhhHH-HHHHHHHHHHHcC-CeEEEEeccCCCCCcccHHHhcCccceEEeccCCCcccccCcHHHHHHHcCCCHHHHHH
Confidence 33 4577888888889 8999999987655443333221 222333433 4445678889
Q ss_pred HHHhcCC-----------------ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcC-CCHHHH
Q 015182 259 EALMDGH-----------------IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYG-VTLEQL 319 (411)
Q Consensus 259 ~~l~~G~-----------------~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-l~~~~a 319 (411)
+++++|+ .+++|||+.|++. + + .......++..++.+. +.+ ++++++
T Consensus 349 ~~l~~G~i~~~~~~~~v~~~~~~~~~~iGTD~~~~~~--~-----~-------~~~~~~~~~~~l~~~v~~~~~l~~~~~ 414 (496)
T 1rk6_A 349 ELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDE--R-----P-------HPRLWGTFPRVLGHYSRDLGLFPLETA 414 (496)
T ss_dssp HHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCS--S-----C-------CTHHHHHHHHHHCCCCCCTCSSCHHHH
T ss_pred HHHhcCceeecCCHHHHHHHHcCCCEEEecCCCCCCC--C-----C-------CchhhccHHHHHHHHHhhcCCCCHHHH
Confidence 9888888 4799999976531 0 1 1112223444443223 234 999999
Q ss_pred HHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 320 ASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 320 l~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
++++|.|||++||++++|+|++|++|||||||++.+...+ .+ .+|+. ..+.|..||++|++||++|++
T Consensus 415 l~~~T~~~A~~lgl~~~G~i~~G~~ADlv~~d~~~~~~~~---~~------~~~~~---~~~~v~~v~v~G~~v~~~g~~ 482 (496)
T 1rk6_A 415 VWKMTGLTAAKFGLAERGQVQPGYYADLVVFDPATVADSA---TF------EHPTE---RAAGIHSVYVNGAAVWEDQSF 482 (496)
T ss_dssp HHTTTHHHHHHHTCTTCSSCCTTSBCCEEEECTTTCBCCC---CS------SSTTC---CCBSEEEEEETTEEEEETTEE
T ss_pred HHHHHHHHHHHhCCCCCCCcCCCCcccEEEEcCccccccc---cc------ccccc---cCCCceEEEECCEEEEECCee
Confidence 9999999999999966999999999999999988643221 11 13332 245699999999999999999
Q ss_pred cCCCCCccccC
Q 015182 400 APAACGSPILA 410 (411)
Q Consensus 400 ~~~~~g~~~~~ 410 (411)
+....|+.++.
T Consensus 483 ~~~~~g~~l~~ 493 (496)
T 1rk6_A 483 TGQHAGRVLNR 493 (496)
T ss_dssp CSCCCCCBCCC
T ss_pred ccCCCceEeec
Confidence 98778988864
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=245.90 Aligned_cols=302 Identities=20% Similarity=0.190 Sum_probs=185.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEE---eeecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW---GGLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 77 (411)
+|||||+|+|+..++...++ +..+.++++||||++|++ ++.+ .+.+.+.+..+.. ...+..... .+..+
T Consensus 53 ~PG~ID~H~H~~~~~~~~~~---~~~~~~~~~GvTtv~d~~-~~~~--~~~~~~~~~~~~~--~~~i~~~~~~~~~G~~~ 124 (379)
T 2ics_A 53 SAGWIDDHVHCFEKMALYYD---YPDEIGVKKGVTTVIDAG-TTGA--ENIHEFYDLAQQA--KTNVFGLVNISKWGIVA 124 (379)
T ss_dssp EECEEEEEECCCTTSSSSCC---CHHHHTGGGTEEEEEEES-SSCT--TTHHHHHHHHHTS--SSEEEEEEESSTTTTSS
T ss_pred ccCEEEeccccCccCccccC---chhhhHhhCceeEEEcCC-CCCc--cCHHHHHHHHHhh--cccEEEEccccccCCCC
Confidence 69999999999876544443 345788999999999987 4322 3444444433221 111211110 01111
Q ss_pred C-Cc-----cchHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHh-CCCcEEEecCCcccchhhhhh
Q 015182 78 E-NA-----YNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR-YKRPLLVHAEMEKGSERHVKL 147 (411)
Q Consensus 78 ~-~~-----~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~~~~~~~~~~~ 147 (411)
. .. ...+++.++.+ .++.++|.++.+.. ...++.+.++++++.|++ +|+++.+|+.+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~a~~~~g~~v~~H~~~~~~~------ 195 (379)
T 2ics_A 125 QDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTV---IGDNGITPLELAKQIQQENQEIPLMVHIGSAPPH------ 195 (379)
T ss_dssp SCTTSSGGGCCHHHHHHHHHHCTTTEEEEEEEESHHH---HTTCTTHHHHHHHHHHHTTTTCCEEEEECSSSSC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCcceEEEEeccccc---cccchHHHHHHHHHHHHHhcCCeEEEeCCCCcch------
Confidence 1 11 11345555554 48889999875421 123567889999999999 999999999753211
Q ss_pred ccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhh--ccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccc
Q 015182 148 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT--RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 225 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p 225 (411)
...+.+..+.. -... ..+.+.|+.|.+.. ...+.++.+++.|+ .++++|
T Consensus 196 -------------------------~~~~~~~~~~g~~~~H~-~~~~~~~~~~~s~~-~~~~~~~~~~~~g~--~~~~~p 246 (379)
T 2ics_A 196 -------------------------LDEILALMEKGDVLTHC-FNGKENGILDQATD-KIKDFAWQAYNKGV--VFDIGH 246 (379)
T ss_dssp -------------------------HHHHHHHCCTTCEEEST-TCCSTTSSEETTTT-EECHHHHHHHHTTC--EEECCC
T ss_pred -------------------------HHHHHHHhhcCCeeeec-cCCCccchhhccCH-HHHHHHHHHHHcCC--EEEecC
Confidence 11111111100 0000 01122233343232 33466777777775 566776
Q ss_pred ccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcC-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHH
Q 015182 226 HYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPV 304 (411)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~ 304 (411)
.+... ....+++++++| .+++++||+.+.. + +. .|. ..+..
T Consensus 247 ~~~~~----------------------~~~~~~~~~~~G~~~~~l~TD~~~~~---~------~~-~~~------~~~~~ 288 (379)
T 2ics_A 247 GTDSF----------------------NFHVAETALREGMKAASISTDIYIRN---R------EN-GPV------YDLAT 288 (379)
T ss_dssp TTTSC----------------------CHHHHHHHHHTTCCCSBCCCCBCHHH---H------HS-SSC------CCHHH
T ss_pred CCCCc----------------------CHHHHHHHHHcCCCcceEeccCcccC---C------CC-CcH------hHHHH
Confidence 53211 134577788889 8899999974211 1 10 010 12333
Q ss_pred HHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEe---
Q 015182 305 TWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG--- 381 (411)
Q Consensus 305 ~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~--- 381 (411)
.+..+.+.++|++++++++|.|||++||++++|+|++|++|||||||++..+.. ++|+.|..+.+
T Consensus 289 ~l~~~~~~~ls~~~~~~~~T~n~A~~lgl~~~G~l~~G~~ADlvv~d~~~~~~~------------~~~~~g~~~~~~~~ 356 (379)
T 2ics_A 289 TMEKLRVVGYDWPEIIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTIQAEEKT------------LTDSNGLTRVAKEQ 356 (379)
T ss_dssp HHHHHHHHTCCHHHHHHTTTHHHHHHTTCTTSSSCCTTSBCCEEEEEEEEEEEE------------EECTTSCEEEEEEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCcCCCCCCccCEEEEecccccce------------eecCCCCEEEeeee
Confidence 333344568999999999999999999995599999999999999997644321 56788888888
Q ss_pred -EEEEEEECCEEEEEcCc
Q 015182 382 -KVLATISRGNLVYKEGN 398 (411)
Q Consensus 382 -~v~~ti~~G~~v~~~g~ 398 (411)
+|..||++|++||++|-
T Consensus 357 ~~v~~t~v~G~~v~~~~~ 374 (379)
T 2ics_A 357 IRPIKTIIGGQIYDNEGH 374 (379)
T ss_dssp EEEEEEEETTEEEEC---
T ss_pred eeeEEEEECCEEEecCCc
Confidence 99999999999999984
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=248.79 Aligned_cols=321 Identities=16% Similarity=0.183 Sum_probs=180.8
Q ss_pred CCceeecccccCCC---CCC----------------------ccCChHHHHHH----HHcCCceeEecCCCCCCCCCCCH
Q 015182 1 MPGLIDVHAHLDDP---GRT----------------------EWEGFPSGTKA----AAAGGITTLIDMPLNSDPSTIST 51 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~~----------------------~~~~~~~~~~~----a~~~GvTtv~d~~~~~~~~~~~~ 51 (411)
+|||||+|+|+..+ +.. +.++++..++. ++++||||++|++ ++.+.....
T Consensus 69 ~PG~ID~H~H~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~~~~ 147 (492)
T 2paj_A 69 YPAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHN-YVYYPGMPF 147 (492)
T ss_dssp EECEECCCCCGGGGGCCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECC-CCCCTTCSS
T ss_pred eeCccccccChhhHhhcCccCCCCCCHHHHHHhcccchhhcCCHHHHHHHHHHHHHHHHhcCcEEEEech-hhccccccc
Confidence 69999999998654 210 12445444445 8999999999997 433321122
Q ss_pred HHHHHHHHHHhcCCceEEEEEeeecCC---------------C-ccchHHHHHHHHC--Cc---eEEEEeccCCCCCCC-
Q 015182 52 ETLKLKVDAAEKRIYVDVGFWGGLVPE---------------N-AYNASALEALLNA--GV---LGLKSFMCPSGINDF- 109 (411)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~--g~---~~ik~~~~~~~~~~~- 109 (411)
+.++...+..+. ..+++.+..+.... . .+.+.++.++.+. +. ..+|+++.+. +.
T Consensus 148 ~~~~~~~~~~~~-~g~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 223 (492)
T 2paj_A 148 DSSAILFEEAEK-LGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPT---TVL 223 (492)
T ss_dssp CHHHHHHHHHHH-TTCEEEEEECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCT---TTT
T ss_pred chHHHHHHHHHH-cCCEEEEEchhhcccccccccCCccccccCHHHHHHHHHHHHHHhccCCCCCceEEEEecc---cCC
Confidence 234443333222 22333322211100 0 0123444455442 21 2367766553 23
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 110 PMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 110 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
..+++++++++++.|+++|+++.+|+.+.. .++..+...| .. .+ +.+.+.++
T Consensus 224 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~g-------------~~-------~~----~~~~~~g~--- 276 (492)
T 2paj_A 224 YSISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYSMYG-------------KS-------PV----AFCGEHDW--- 276 (492)
T ss_dssp TSSCHHHHHHHHHHHHHTTCEEEEECC-------------C-------------CC-------HH----HHHHHTTC---
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeCCChHHHHHHHHHcC-------------CC-------HH----HHHHHCCC---
Confidence 357899999999999999999999998743 2222111100 00 11 11222211
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccE
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 268 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~ 268 (411)
.+.+..+.|+... . .+.++.++++|+ .+++||...+. .+ ...||++. ++++|++++
T Consensus 277 -~~~~~~i~H~~~~-~-~~~i~~l~~~gv--~v~~~p~~~~~-------l~---~~~~p~~~---------~~~~Gv~v~ 332 (492)
T 2paj_A 277 -LGSDVWYAHLVKV-D-ADEIALLAQTGT--GVAHCPQSNGR-------LG---SGICPVRE---------MADAGVPVS 332 (492)
T ss_dssp -CSTTEEEESCCSC-C-HHHHHHHHHHTC--EEEECHHHHHC-------C--------CCTT---------HHHHTCCEE
T ss_pred -CCCCcEEEEEecC-C-HHHHHHHHHcCC--EEEECchhhcc-------cC---CCCCCHHH---------HHHCCCcEE
Confidence 1345667787654 2 234666666674 56678753211 01 12466654 366799999
Q ss_pred EcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-----------------HHhcCCCHHHHHHHHhHhHHHHh
Q 015182 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-----------------GRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 269 ~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~l~~~~al~~~T~n~A~~l 331 (411)
+|||+.+.+... ++| .+......+.. ....+++++++++++|.|||+++
T Consensus 333 lgTD~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~aT~~~A~~l 398 (492)
T 2paj_A 333 IGVDGAASNEAA-----DMI---------SEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVM 398 (492)
T ss_dssp ECCCHHHHCSCC-----SHH---------HHHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHH
T ss_pred EeCCCCCCCCCC-----CHH---------HHHHHHHHHhhhhcccccccccccccccCCcCcCCHHHHHHHHHHHHHHHh
Confidence 999974321100 011 01111111111 02356999999999999999999
Q ss_pred CCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE---EeEEEEEEECCEEEEEcCcccC
Q 015182 332 GQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 332 g~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~---~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
|++++|+|++||.|||||||.+..+..+ - ++|+.++.. ..+|..||++|++||++|+++.
T Consensus 399 gl~~~Gsl~~Gk~ADlvvld~~~~~~~~-~---------~~p~~~i~~~~~~~~v~~v~v~G~~v~~~g~~~~ 461 (492)
T 2paj_A 399 GLDEVGKVAVGYAADIAVYRLDDPRYFG-L---------HDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEG 461 (492)
T ss_dssp TCTTSSCCSTTSBCCEEEEECCSGGGTT-C---------SSGGGHHHHSCSCCEEEEEEETTEEEEETTBCTT
T ss_pred CCCCccccCCCCccCEEEEeCCCcccCC-c---------cCHHHHHHhcCCCCCceEEEECCEEEEECCeecc
Confidence 9976899999999999999988654321 1 456665422 1379999999999999999874
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=231.56 Aligned_cols=303 Identities=16% Similarity=0.134 Sum_probs=189.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCC----CCCCCCCHHHHH--HHHHHHh--cC--CceEEE
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLN----SDPSTISTETLK--LKVDAAE--KR--IYVDVG 70 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~----~~~~~~~~~~~~--~~~~~~~--~~--~~~~~~ 70 (411)
+|||||+|+|+..+++........+++.++++||||++|++ + ..+ ...+.++ ...+... +. ....
T Consensus 60 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-- 134 (386)
T 2vun_A 60 TPGLLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAG-SPHFPGRP--KDAAGTKALAITLSKSYYNARPAGVK-- 134 (386)
T ss_dssp EECEEEEEECCCSTTEEGGGTEESHHHHHHTTTEEEEEECC-CTTSTTCC--CSHHHHHHHHHHHHHHHHHCCGGGCE--
T ss_pred ccceeeccccccCCCcChhHHHHHHHHHHHhCCceEEEecc-ccccCCCh--hhHHHHHHHHHHhhccccccccccee--
Confidence 69999999999754321100112368899999999999987 3 222 2343444 2222111 10 0111
Q ss_pred EEee---ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhh
Q 015182 71 FWGG---LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKL 147 (411)
Q Consensus 71 ~~~~---~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~ 147 (411)
+..+ ... . ....++.++.+.|+..+|++... + ..+++.++++++.|+++|+++.+|+.+.......
T Consensus 135 ~~~g~~~~~~-~-~~~~~~~~~~~~g~~~ik~~~~~----~--~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~--- 203 (386)
T 2vun_A 135 VHGGAVILEK-G-LTEEDFIEMKKEGVWIVGEVGLG----T--IKNPEDAAPMVEWAHKHGFKVQMHTGGTSIPGSS--- 203 (386)
T ss_dssp EECCEECCCT-T-CCHHHHHHHHHTTCCEEEEETSS----S--CCSHHHHHHHHHHHHHTTCEEEEECSCCSCSTTC---
T ss_pred eccCcccccC-C-cCHHHHHHHHHhCCCeEEEeecC----C--CCCHHHHHHHHHHHHHCCCeEEEecCCccccccC---
Confidence 1111 111 1 12356777788899999987531 1 3588999999999999999999999864321100
Q ss_pred ccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC----hHHHHHHHHHHhHCCCCEEEEc
Q 015182 148 EDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD----ASSSLDLLMEAKTNGDSITVET 223 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~----~~~~~~~i~~~~~~g~~i~~~~ 223 (411)
.. .+..++ +. |.+ .+.|++. . +.+.++.+++.|+.+. .
T Consensus 204 ------~~----------------~i~~~~----~~-------G~~-~i~H~~~~~~~~--~~~~~~~~~~~g~~vl--~ 245 (386)
T 2vun_A 204 ------TV----------------TADDVI----KT-------KPD-VVSHINGGPTAI--SVQEVDRIMDETDFAM--E 245 (386)
T ss_dssp ------SC----------------CHHHHH----HH-------CCS-EEETTTCSSSCC--CHHHHHHHHHHCCCEE--E
T ss_pred ------HH----------------HHHHHH----Hc-------CCC-EEEEccCCCCCC--CHHHHHHHHHcCCeEE--E
Confidence 00 022222 22 444 4889776 3 3466777777787551 1
Q ss_pred ccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhH
Q 015182 224 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV 301 (411)
Q Consensus 224 ~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~ 301 (411)
+++ + + . .......++++++.|+ .++++||+ |... ...+.|.
T Consensus 246 ~~~----~-------g-------~--~~~~~~~~~~~~~~g~~d~v~lgTD~-p~~~----------~~~~~g~------ 288 (386)
T 2vun_A 246 IVQ----C-------G-------N--PKIADYVARRAAEKGQLGRVIFGNDA-PSGT----------GLIPLGI------ 288 (386)
T ss_dssp EES----S-------S-------C--HHHHHHHHHHHHHHTCGGGEEEECCB-SBTT----------BBCTTHH------
T ss_pred ecc----C-------C-------c--ccccHHHHHHHHHcCCCceeEEecCC-CCCC----------CCCcchh------
Confidence 111 0 1 0 1234567888899999 88999997 4211 0012221
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCce--E
Q 015182 302 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR--L 379 (411)
Q Consensus 302 ~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~--~ 379 (411)
+...+..+.+.+++++++++++|.|||++||+ ++|+|++|++|||||||.+.. . +. .+|+.... .
T Consensus 289 ~~~~~~~~~~~~ls~~~~~~~~T~n~A~~lgl-~~G~i~~G~~ADlvv~d~~~~-~-~~----------~~~~~~~~~~~ 355 (386)
T 2vun_A 289 LRNMCQIASMSDIDPEVAVCMATGNSTAVYGL-NTGVIAPGKEADLIIMDTPLG-S-VA----------EDAMGAIAAGD 355 (386)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHTHHHHHHHTC-SCSSCSTTSBCCEEEEECBTT-C-SC----------SSHHHHHHHTC
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCC-CceeeCCCCeeCEEEECCCcc-c-cc----------chhHHHhhccC
Confidence 11122234567899999999999999999999 799999999999999998742 2 11 12222111 0
Q ss_pred EeEEEEEEECCEEEEEcCcccCCCCCccc
Q 015182 380 SGKVLATISRGNLVYKEGNHAPAACGSPI 408 (411)
Q Consensus 380 ~~~v~~ti~~G~~v~~~g~~~~~~~g~~~ 408 (411)
..+|..||++|++||++|+..+ ++|+.+
T Consensus 356 ~~~v~~v~v~G~~v~~~~~~~~-~~~~~~ 383 (386)
T 2vun_A 356 IPGISVVLIDGEAVVTKSRNTP-PAKRAA 383 (386)
T ss_dssp CCEEEEEEETTEEEESSCSSSC-CBSSCC
T ss_pred CCceeEEEECCEEEeecCcCCC-CCCccc
Confidence 2379999999999999998877 567654
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-29 Score=241.85 Aligned_cols=308 Identities=17% Similarity=0.077 Sum_probs=181.9
Q ss_pred CCceeecccccCCCCCCc-------cCC----hHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEE
Q 015182 1 MPGLIDVHAHLDDPGRTE-------WEG----FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 69 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~-------~~~----~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
+|||||+|+|+....... .+. .....+.++++||||++|++ .. .. .++...+.... ...++
T Consensus 58 ~PGliD~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~-----~~-~l~~~i~~~~~-~gpri 129 (426)
T 2r8c_A 58 MPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDAG-GA-----GY-PFKQAVESGLV-EGPRL 129 (426)
T ss_dssp EECEEEEEECTTCCSSCHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEECS-SC-----CH-HHHHHHHTTSS-CCCEE
T ss_pred cCCeEeeeeccccccCCchhhccCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-Cc-----hH-HHHHHHHcCCC-CCCeE
Confidence 699999999998764311 111 11344567999999999998 32 11 34443332111 11122
Q ss_pred EEEeee----------------------------------cCCCc-cchHHHHHHHHCCceEEEEeccCCC-----CCCC
Q 015182 70 GFWGGL----------------------------------VPENA-YNASALEALLNAGVLGLKSFMCPSG-----INDF 109 (411)
Q Consensus 70 ~~~~~~----------------------------------~~~~~-~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~ 109 (411)
...... ..... +....++++++.|+..+|+++++.. ..+.
T Consensus 130 ~~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ik~~~~G~~~~~~~p~~~ 209 (426)
T 2r8c_A 130 FVSGRALSQTGGHADPRARSDYMPPDSPCGCCVRVGALGRVADGVDEVRRAVREELQMGADQIKIMASGGVASPTDPVGV 209 (426)
T ss_dssp EECCSEEECTTSTTCCCCCSSBCCCSCSSSSBCCTTCCEEECCSHHHHHHHHHHHHHHTCSSEEEECBCCSSSSSCCSSC
T ss_pred EecCCcccCCCCCcccccccccccccccccccccccccccccCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCccc
Confidence 111100 00111 1234556667789999999986421 1233
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 110 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 110 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
..+++++++++++.|+++|+++.+|+.+... +..+++.
T Consensus 210 ~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~--------------------------------i~~al~~---------- 247 (426)
T 2r8c_A 210 FGYSEDEIRAIVAEAQGRGTYVLAHAYTPAA--------------------------------IARAVRC---------- 247 (426)
T ss_dssp BCSCHHHHHHHHHHHHHTTCCEEEEECSHHH--------------------------------HHHHHHT----------
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEeCChHH--------------------------------HHHHHHc----------
Confidence 4689999999999999999999999986532 2222321
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCC--hhhHHHHHHHHhcCCcc
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD--AANKEKLWEALMDGHID 267 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~--~~~~~~l~~~l~~G~~~ 267 (411)
|.+ .+.|+... +.+.++.+++.|+.++.+..+...++........... ....++. ......+..+++.|+.+
T Consensus 248 -G~~-~i~H~~~~--~~~~~~~~~~~gv~~~pt~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~Gv~v 321 (426)
T 2r8c_A 248 -GVR-TIEHGNLI--DDETARLVAEHGAYVVPTLVTYDALASEGEKYGLPPE--SIAKIADVHGAGLHSIEIMKRAGVKM 321 (426)
T ss_dssp -TCS-EEEECTTC--CHHHHHHHHHTTCEEECCTHHHHHHHHHTTTTTCCHH--HHTTSTTTGGGHHHHHHHHHHTTCEE
T ss_pred -CCC-EEecCCcC--CHHHHHHHHHcCCeEeechHHHHHHhhhccccCCCHH--HHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 322 47888765 4466777778887654433232222111100000000 0001111 12345667778889999
Q ss_pred EEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCcc
Q 015182 268 MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHAD 346 (411)
Q Consensus 268 ~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~AD 346 (411)
++|||+.+... +.... .+.... +.++++++|+++|.|||+++|+ +++|+|++||.||
T Consensus 322 ~lgTD~~~~~~---------------~~~~~------e~~~~~-~~l~~~eal~~aT~~~A~~lg~~~~~G~i~~G~~AD 379 (426)
T 2r8c_A 322 GFGTDLLGEAQ---------------RLQSD------EFRILA-EVLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHAD 379 (426)
T ss_dssp CCCCCCCGGGG---------------GGTTH------HHHHHT-TTSCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCC
T ss_pred EEecCCCCCCC---------------cchHH------HHHHHH-hcCCHHHHHHHHHHHHHHHhCCCCCCccCCCCCcCC
Confidence 99999742111 00001 112223 3499999999999999999999 5689999999999
Q ss_pred EEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 347 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 347 lvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
|||||.|+.. ++. .+... ..+|..||++|++||++++..+
T Consensus 380 lvvld~~p~~------~~~-------~~~~~--~~~v~~v~~~G~~v~~~~~~~~ 419 (426)
T 2r8c_A 380 VLVVDGNPLK------SVD-------CLLGQ--GEHIPLVMKDGRLFVNELEGHE 419 (426)
T ss_dssp EEEESSCTTT------CGG-------GTCSS--STTCCEEEETTEEEEETTC---
T ss_pred EEEECCChHh------CHH-------HHhCc--CCcceEEEECCEEEeccccccc
Confidence 9999987421 110 00000 1368999999999999886653
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=245.48 Aligned_cols=303 Identities=22% Similarity=0.287 Sum_probs=190.1
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCC----CCCCCC--HHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNS----DPSTIS--TETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..|+ ..+.++++||||++||+.+. .+...+ ...++.+.+... ...+++.+++.
T Consensus 129 ~PGlID~HvHl~~p~---------~~~~al~~GvTTv~d~g~~p~~~t~~~~~~~g~~~l~~~~~a~~-~~~~~~~~~g~ 198 (569)
T 1e9y_B 129 TAGGIDTHIHFISPQ---------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAE-EYSMNLGFLAK 198 (569)
T ss_dssp EECEEEEEEETTCTT---------HHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHT-TSSSEEEEEEE
T ss_pred ecCEEEEeecCCCcH---------HHHHHHhCCeeEEEcCCcCCCCCCcCcccCCcHHHHHHHHHHhc-ccCceEEEECC
Confidence 699999999998754 25789999999999985211 111111 344555555443 34578776643
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
.. ....+.+.++++.|+.++|++..+ ..++++++++++.|+++|+++.+|+++.....
T Consensus 199 g~---~~~~~~l~e~~~~Ga~gik~~~~~-------~~t~e~l~~~l~~A~~~g~~V~iHa~~~~e~g------------ 256 (569)
T 1e9y_B 199 GN---ASNDASLADQIEAGAIGFKIHEDW-------GTTPSAINHALDVADKYDVQVAIHTDTLNEAG------------ 256 (569)
T ss_dssp CC---CSCHHHHHHHHHTTCSEEEECGGG-------CCCHHHHHHHHHHHHHTTCEEEECCCTTCSSC------------
T ss_pred CC---cCCHHHHHHHHHcCCCEEEecCCC-------CCCHHHHHHHHHHHHHhCCEEEEEcCCcccch------------
Confidence 21 123456788888999999997643 35889999999999999999999998632110
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHH---HHHHHHHhHCCCCEEEEccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS---LDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~---~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
.+...+ +... +.++|++|++.. .. .++++.+++.|+ .+.++++++.++
T Consensus 257 -----------------~~~~~l--a~~~-------g~~~hi~H~~~~-~~~~~~d~I~~~~~~gv--~~~~~~ptl~~t 307 (569)
T 1e9y_B 257 -----------------CVEDTM--AAIA-------GRTMHTFHTEGA-GGGHAPDIIKVAGEHNI--LPASTNPTIPFT 307 (569)
T ss_dssp -----------------CHHHHH--HHHT-------TCCEEETTTTST-TSCSTTTGGGGGGSTTE--EEEECGGGCSCB
T ss_pred -----------------HHHHHH--HHHc-------CCCEEEEEcccC-cccccHHHHHHHHHcCC--eeEeeCCccccc
Confidence 011112 1222 778999999875 32 578888877774 333443343322
Q ss_pred ccccCC-CCc---ceEEcCCCC---------ChhhHHHHHHHHh-cCCccEEcCCCCCCChhh-hhcccCCccccCCCCc
Q 015182 232 AEEIPD-GDT---RFKCAPPIR---------DAANKEKLWEALM-DGHIDMLSSDHSPTVPEL-KLLDEGNFLKAWGGIS 296 (411)
Q Consensus 232 ~~~~~~-~~~---~~~~~p~lr---------~~~~~~~l~~~l~-~G~~~~~~sD~~p~~~~~-k~~~~~~~~~~~~g~~ 296 (411)
.+.... .+. .....++++ ...+...+|+.+. .|+++++|||+.|++... ... +.|.
T Consensus 308 ~~~~~~~~d~~~v~h~l~~~~~ed~~~~~~rlr~~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~~--~~~~------- 378 (569)
T 1e9y_B 308 VNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVIT--RTWQ------- 378 (569)
T ss_dssp TTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTSHHH--HHHH-------
T ss_pred cchhhhhhchhhhhhhcCcccHHHHHHhhcchhhhHHHHHHHHHhCCCEEEEeCCCCccCccccccc--chhh-------
Confidence 111000 000 000112211 1134567788777 599999999997764210 000 0000
Q ss_pred hhhhHHHHHHH-----HHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCC
Q 015182 297 SLQFVLPVTWS-----YGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 370 (411)
Q Consensus 297 ~~~~~~~~~~~-----~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~ 370 (411)
....+..... ...+.+++++++++++|.|||+++|+ +++|+|++||+|||||||++. +
T Consensus 379 -~~~~~~~~~G~l~~~~~~~~~ls~~~al~~~T~npA~~lGl~~~~GsIe~Gk~ADlvv~d~~~-~-------------- 442 (569)
T 1e9y_B 379 -TADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAF-F-------------- 442 (569)
T ss_dssp -HHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECTTT-T--------------
T ss_pred -HHHHhHhhccCcchhhccccCCCHHHHHHHHhHHHHHHcCCCCCccCcCCCCCCCEEEECchh-c--------------
Confidence 0000000000 00234589999999999999999999 569999999999999999772 1
Q ss_pred CCccCCceEEeEEEEEEECCEEEEEc-Cc
Q 015182 371 ISAYLGRRLSGKVLATISRGNLVYKE-GN 398 (411)
Q Consensus 371 ~~p~~g~~~~~~v~~ti~~G~~v~~~-g~ 398 (411)
..+|..||++|++||.+ |+
T Consensus 443 ---------~~~v~~v~~~G~iv~~~~g~ 462 (569)
T 1e9y_B 443 ---------GVKPNMIIKGGFIALSQMGD 462 (569)
T ss_dssp ---------TTCCSEEEETTEEEEEEECC
T ss_pred ---------CCCccEEEECCEEEEcCCCC
Confidence 12478999999999986 54
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=239.54 Aligned_cols=318 Identities=15% Similarity=0.065 Sum_probs=184.3
Q ss_pred CCceeecccccCCC---CC---------------------CccCChHH----HHHHHHcCCceeEecCCCCCCCCCCCHH
Q 015182 1 MPGLIDVHAHLDDP---GR---------------------TEWEGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTE 52 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~---------------------~~~~~~~~----~~~~a~~~GvTtv~d~~~~~~~~~~~~~ 52 (411)
+|||||+|+|+... +. ...++++. ....++++||||++|+. . ...
T Consensus 63 ~PGlID~H~Hl~~~~~~g~~~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~ 135 (447)
T 4f0r_A 63 MPGLINLHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDMY-F------YNA 135 (447)
T ss_dssp EECEEEEEECGGGGGGTTSSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECB-S------CHH
T ss_pred eeCccchhhChhhHhhccCCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-c------CHH
Confidence 69999999999422 11 11122222 44557889999999986 2 122
Q ss_pred HHHHHHHHHhcCCceEEEEEeeecCC----C-ccchHHHHHHHHC--CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 53 TLKLKVDAAEKRIYVDVGFWGGLVPE----N-AYNASALEALLNA--GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~--g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
.+.+.... ...+..+.......+. . .+.++.+.++.+. |...+++++.+.. ...++.++++++++.|+
T Consensus 136 ~~~~~~~~--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~A~ 210 (447)
T 4f0r_A 136 AVARAGLA--SGMRTFVGCSILEFPTNYASNADDYIAKGMAERSQFLGEDLLTFTLAPHA---PYTVSDDTFRKVVTLAE 210 (447)
T ss_dssp HHHHHHHH--HTCEEEEEEEECSSCCSSCSSHHHHHHHHHHHHHTTTTCTTEEEEEEECC---GGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCeEEEEchhcCCCcccccCHHHHHHHHHHHHHHhcCCCceEEEEecCC---CCCCCHHHHHHHHHHHH
Confidence 22222211 1222222211100011 1 1223444444442 5556776665432 23568999999999999
Q ss_pred hCCCcEEEecCCc-ccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH
Q 015182 126 RYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 204 (411)
Q Consensus 126 ~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~ 204 (411)
++|+++.+|+.+. ..+...+...| . ..++.+.+.+. .+.+..+.|+...
T Consensus 211 ~~g~~v~iH~~~~~~~~~~~~~~~g-------------~-----------~~i~~~~~~g~----~~~~~~~~H~~~~-- 260 (447)
T 4f0r_A 211 QEDMLIHCHIHETADEVNNSVKEHG-------------Q-----------RPLARLQRLGL----LSPRLVAAHMVHL-- 260 (447)
T ss_dssp HHTCCEEEEESCCHHHHHHHHHHHS-------------S-----------CHHHHHHHHTC----CSTTEEEEECCSC--
T ss_pred HcCCeEEEEeCCCHHHHHHHHHHcC-------------C-----------CHHHHHHHcCC----CCCCcEEEeccCC--
Confidence 9999999999876 33322221111 0 01222233321 2567788898864
Q ss_pred HHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcc
Q 015182 205 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 284 (411)
Q Consensus 205 ~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~ 284 (411)
+.+.++.+++.|+ ...+||...+.... + .+ .++++++.|+.++++||+.+.+...
T Consensus 261 ~~~~~~~~~~~g~--~~~~~p~~~~~~~~-----~-----~~---------~~~~~~~~Gv~v~lgTD~~~~~~~~---- 315 (447)
T 4f0r_A 261 NDAEVELAARHGL--STAHNPASNMKLAS-----G-----IS---------PVSKLMDAGVAVGIGTDGAASNNKL---- 315 (447)
T ss_dssp CHHHHHHHHHHTC--EEEECHHHHHHTTC-----C-----CC---------CHHHHHHTTCEEEECCCCGGGTCCC----
T ss_pred CHHHHHHHHHcCC--EEEECchhhhhcCC-----C-----CC---------cHHHHHHCCCcEEEeCCCCcCCCCC----
Confidence 2344555656665 45567753221100 0 11 1345677899999999975431100
Q ss_pred cCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCC
Q 015182 285 EGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDN 360 (411)
Q Consensus 285 ~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~ 360 (411)
++| .+..+...+.... ..+++++++++++|.|||+++|+ +++|+|++||.|||||||.+.++..+.
T Consensus 316 -~~~---------~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~ 385 (447)
T 4f0r_A 316 -DML---------AETRLAALLAKVGTLDPTSVPAAAAIRMATLNGARALGIADKVGSVKVGKQADLIALDLAQLETAPA 385 (447)
T ss_dssp -CHH---------HHHHHHHHHHHHHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSC
T ss_pred -CHH---------HHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCCcCCC
Confidence 011 1222222222222 45799999999999999999999 568999999999999999986654443
Q ss_pred CCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCC
Q 015182 361 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 361 ~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~ 402 (411)
. +..+ ...|.. ...+|..||++|++||++|+++..
T Consensus 386 ~-~~~~----~~~~~~--~~~~v~~v~v~G~~v~~~g~~~~~ 420 (447)
T 4f0r_A 386 F-DPIS----HVVYAA--GREQVSHVWVKGRALMRERKLTTL 420 (447)
T ss_dssp S-CHHH----HHHHTC--CGGGEEEEEETTEEEEETTEESSS
T ss_pred c-ChHH----HheecC--CCCCceEEEECCEEEEECCeECcC
Confidence 3 2111 001111 135799999999999999998753
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=235.15 Aligned_cols=298 Identities=16% Similarity=0.117 Sum_probs=183.2
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEe---eecC
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG---GLVP 77 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 77 (411)
+|||||+|+|+..++...+++ ..+.++++||||++|++ ++.+ ...+.+...... .....+...... +...
T Consensus 70 ~PGlID~H~H~~~~~~~~~~~---~~~~~l~~GvTtv~d~~-~~~~--~~~~~~~~~~~~-~~~~~i~~~~~~~~~G~~~ 142 (417)
T 2ogj_A 70 SPGWVDLHVHIWHGGTDISIR---PSECGAERGVTTLVDAG-SAGE--ANFHGFREYIIE-PSRERIKAFLNLGSIGLVA 142 (417)
T ss_dssp EECEEEEEECCCBTTBSSCCC---GGGTSGGGTEEEEEEES-SCCS--TTHHHHHHHTTT-TCSSEEEEEEESSTTTTTT
T ss_pred ccCeeeccccccccccccCCC---HHHHHHhCCcCeEEeCC-cCCC--cCHHHHHHHHhh-ccccCeEEEeccccCcCCC
Confidence 699999999998765433322 23468999999999997 4433 334433331111 111112211111 1111
Q ss_pred ----CCc-----cchHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhh
Q 015182 78 ----ENA-----YNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 145 (411)
Q Consensus 78 ----~~~-----~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~ 145 (411)
.+. ...+.+.++.+ .++.++|+++++.. ...++.+.++++++.|+++|+++.+|+.+....
T Consensus 143 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~---- 215 (417)
T 2ogj_A 143 CNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVI---TGSWGVTPVKLGKKIAKILKVPMMVHVGEPPAL---- 215 (417)
T ss_dssp TTTSCSCSSGGGCCHHHHHHHHHTCTTTEEEEEEEESHHH---HTTCTTHHHHHHHHHHHHHTCCEEEEECSSSSC----
T ss_pred CCCcccccchhhcCHHHHHHHHHhCCCceEEEEEEecCCc---cccccHHHHHHHHHHHHHcCCcEEEEcCCCccc----
Confidence 000 01244555554 35678999876321 123567889999999999999999999753210
Q ss_pred hhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC----------hHHHHHHHHHHhHC
Q 015182 146 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD----------ASSSLDLLMEAKTN 215 (411)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~----------~~~~~~~i~~~~~~ 215 (411)
+..+...... + ..+.|+.. . ...+.++.++++
T Consensus 216 ---------------------------~~~~~~~l~~--------g--~~~~H~~~~~~~~~~~~~~-~~~~~i~~~~~~ 257 (417)
T 2ogj_A 216 ---------------------------YDEVLEILGP--------G--DVVTHCFNGKSGSSIMEDE-DLFNLAERCAGE 257 (417)
T ss_dssp ---------------------------HHHHHHHCCT--------T--CEEETTTCCCTTTCTTSCH-HHHHHHHHC--C
T ss_pred ---------------------------HHHHHHHhcC--------C--CEEEeccCCCccchhccCH-HHHHHHHHHHhc
Confidence 1111121110 2 34566543 2 234566666666
Q ss_pred CCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcC-CccEEcCCCCCCChhhhhcccCCccccCCC
Q 015182 216 GDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFLKAWGG 294 (411)
Q Consensus 216 g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g 294 (411)
|+ .++++|.... .....+++++++| ++++++||+. .+. . ..++
T Consensus 258 g~--~v~~~~~~~~----------------------~~~~~~~~~~~~G~~~~~lgtD~~-~~~--~---~g~~------ 301 (417)
T 2ogj_A 258 GI--RLDIGHGGAS----------------------FSFKVAEAAIARGLLPFSISTDLH-GHS--M---NFPV------ 301 (417)
T ss_dssp CC--EEECCBCSSS----------------------CCHHHHHHHHHTTCCCSBCCBCBS-TTT--T---TTTC------
T ss_pred Cc--EEEecCCCcc----------------------ccchHHHHHHHcCCCceEEEcCCC-CCc--c---CCCh------
Confidence 64 3445543110 0245677888899 9999999975 421 0 0010
Q ss_pred CchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCcc
Q 015182 295 ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY 374 (411)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~ 374 (411)
..+...++...+.+++++++++++|.|||++||++++|+|++|++|||||||++.++.. ++++
T Consensus 302 -----~~l~~~~~~~~~~~l~~~~al~~~T~n~A~~lgl~~~G~l~~G~~ADlvv~d~~~~~~~------------~~~~ 364 (417)
T 2ogj_A 302 -----WDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLVDADLE------------ATDS 364 (417)
T ss_dssp -----CCHHHHHHHHHHTTCCHHHHHHTTTHHHHHHTTCCCSSTTSTTSBCEEEEEEEEEEEEE------------EECT
T ss_pred -----hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCccCCCCcccEEEEecccCCce------------ecCC
Confidence 12333444445578999999999999999999995499999999999999998754321 3455
Q ss_pred CCceEEe----EEEEEEECCEEEEEcCcccCCC
Q 015182 375 LGRRLSG----KVLATISRGNLVYKEGNHAPAA 403 (411)
Q Consensus 375 ~g~~~~~----~v~~ti~~G~~v~~~g~~~~~~ 403 (411)
.|..+.+ +|..||++|++||++|+++...
T Consensus 365 ~g~~~~~~~~~~v~~t~v~G~~v~~~~~~~~~~ 397 (417)
T 2ogj_A 365 NGDVSRLKRLFEPRYAVIGAEAIAASRYIPRAR 397 (417)
T ss_dssp TSCEEEEEEEEEEEEEEETTEEEECCCCCCCC-
T ss_pred CCceEecccccceEEEEECCEEEEeCCccchHH
Confidence 6666665 8999999999999999987643
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=243.66 Aligned_cols=303 Identities=16% Similarity=0.082 Sum_probs=176.7
Q ss_pred CCceeecccccCCCCCCc-----c------CChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEE
Q 015182 1 MPGLIDVHAHLDDPGRTE-----W------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 69 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~-----~------~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
+|||||+|+|+....... . .......+.++++||||++|++ .. . ..+++..+.... ...++
T Consensus 58 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~-----~-~~l~~~~~~~~~-~g~r~ 129 (423)
T 3feq_A 58 MPGFIDCHVHVLASNANLGVNATQPNILAAIRSLPILDAMLSRGFTSVRDAG-GA-----D-WSLMQAVETGLV-SGPRI 129 (423)
T ss_dssp EECEEEEEECTTCCSSCHHHHHHSCHHHHHHTHHHHHHHHHHTTEEEEEECS-SC-----C-HHHHHHHHTTSS-CSCEE
T ss_pred CCCeeeeEeeecccCCChhhhhcCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-Cc-----h-HHHHHHHHcCCC-CCCeE
Confidence 699999999998764310 0 1112355667999999999997 32 1 134433332211 11122
Q ss_pred EEEee-------------------------------ecCCCc-cchHHHHHHHHCCceEEEEeccCCC-----CCCCCCC
Q 015182 70 GFWGG-------------------------------LVPENA-YNASALEALLNAGVLGLKSFMCPSG-----INDFPMT 112 (411)
Q Consensus 70 ~~~~~-------------------------------~~~~~~-~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~~~ 112 (411)
..... ...... +..+.++++.+.|+..+|++.++.. ..+...+
T Consensus 130 ~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ik~~~~g~~~~~~~p~~~~~~ 209 (423)
T 3feq_A 130 FPSGKALSQTGGHGDFRPRGDLLEPCSCCFRTGAIARVVDGVEGVRLAVREEIQKGATQIKIMASGGVASPTDPIANTQY 209 (423)
T ss_dssp ECCCSEEECTTSTTCCCCC---CCCCCSSCCTTCSEEECCSHHHHHHHHHHHHHTTCSSEEEECBCCSSSSSCCTTSBCS
T ss_pred EecCcccccCCCCccccccccccccccccccccccceecCCHHHHHHHHHHHHHcCCCEEEEeccCCcCCCCCCcccccC
Confidence 11000 000111 1234556667789999999876321 1233468
Q ss_pred CHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCc
Q 015182 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 192 (411)
Q Consensus 113 ~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~ 192 (411)
++++++++++.|+++|+++.+|+.+... +..+++. |.
T Consensus 210 ~~e~l~~~~~~A~~~g~~v~~H~~~~~~--------------------------------i~~~l~~-----------g~ 246 (423)
T 3feq_A 210 SEDEIRAIVDEAEAANTYVMAHAYTGRA--------------------------------IARAVRC-----------GV 246 (423)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEEEHHH--------------------------------HHHHHHH-----------TC
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCChHH--------------------------------HHHHHHc-----------CC
Confidence 8999999999999999999999986432 2233332 22
Q ss_pred eEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh------hhHHHHHHHHhcCCc
Q 015182 193 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA------ANKEKLWEALMDGHI 266 (411)
Q Consensus 193 ~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~------~~~~~l~~~l~~G~~ 266 (411)
+ .+.|+... +.+.++.+++.|+.++.+..+...++.... ....+|..... .....+..+++.|+.
T Consensus 247 ~-~i~H~~~~--~~~~~~~l~~~gv~~~pt~~~~~~~~~~~~------~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gv~ 317 (423)
T 3feq_A 247 R-TIEHGNLV--DEAAAKLMHEHGAFVVPTLVTYDALAKHGA------EFGMPPESVAKVASVQQKGRESLEIYANAGVK 317 (423)
T ss_dssp C-EEEEEEEC--CHHHHHHHHHHTCEEECCTHHHHHHHHHTG------GGTCCTTTSSTHHHHHHHHHHHHHHHHHHTCC
T ss_pred C-EEeccCcC--CHHHHHHHHHCCCccccchHHHHHHHhccc------ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 2 36676543 234556666667655433222221111110 00112222111 123456667788999
Q ss_pred cEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCc
Q 015182 267 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHA 345 (411)
Q Consensus 267 ~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~A 345 (411)
+++|||+.+... +.... .+....+ .++++++|+++|.|||+++|+ +++|+|++||.|
T Consensus 318 v~~gTD~~~~~~---------------~~~~~------e~~~~~~-~ls~~eal~~aT~~~A~~lg~~~~~G~i~~G~~A 375 (423)
T 3feq_A 318 MGFGSDLLGEMH---------------AFQSG------EFRIRAE-VLGNLEALRSATTVAAEIVNMQGQLGVIAVGAIA 375 (423)
T ss_dssp BCCCCCCCGGGG---------------GGTTH------HHHHHHT-TSCHHHHHHTTTHHHHHHTTCBTTBSSCCTTSBC
T ss_pred EEECCCCCCCCC---------------cchHH------HHHHHHh-hCCHHHHHHHHHHHHHHHhCCCCCceeECCCCcC
Confidence 999999742110 00001 1122334 499999999999999999999 668999999999
Q ss_pred cEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 346 Dlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
||||||.|+.. ++. .+... ..+|..||++|++||++++..
T Consensus 376 Dlvv~d~~p~~------~~~-------~~~~~--~~~v~~v~~~G~~v~~~~~~~ 415 (423)
T 3feq_A 376 DLVVLDGNPLE------DIG-------VVADE--GARVEYVLQRGTLVKRQAAGR 415 (423)
T ss_dssp CEEEESSCTTT------CGG-------GTSSS--TTSEEEEEETTEEEEEC----
T ss_pred CEEEECCChhh------CHH-------HHhcc--CCCceEEEECCEEEeCCcccc
Confidence 99999987321 110 01000 136999999999999998765
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=234.58 Aligned_cols=315 Identities=14% Similarity=0.102 Sum_probs=180.8
Q ss_pred CCceeecccccCCC---CC---------------------CccCChHH----HHHHHHcCCceeEecCCCCCCCCCCCHH
Q 015182 1 MPGLIDVHAHLDDP---GR---------------------TEWEGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTE 52 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~---------------------~~~~~~~~----~~~~a~~~GvTtv~d~~~~~~~~~~~~~ 52 (411)
+|||||+|+|+... +. .+.++++. +...++++||||++|+. . ...
T Consensus 65 ~PG~ID~H~H~~~~~~~g~~~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~ 137 (451)
T 4dyk_A 65 APGLVNAHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMY-F------YPQ 137 (451)
T ss_dssp EECEEECCCCGGGGGGTTSSCSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEEC-S------CHH
T ss_pred eecccchhhChhhHHhccCCCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-c------CHH
Confidence 69999999999422 10 11223333 33445699999999986 2 122
Q ss_pred HHHHHHHHHhcCCceEEEEE-eeecCC---C-ccchHHHHHHHH--CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 53 TLKLKVDAAEKRIYVDVGFW-GGLVPE---N-AYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~-~~~~~~---~-~~~~~~~~~~~~--~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
.+.+.... ...+..+... ...... . .+.+....++.+ .+...+++.+.+.. ...+++++++++++.|+
T Consensus 138 ~~~~a~~~--~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~l~~~~~~A~ 212 (451)
T 4dyk_A 138 AICGVVHD--SGVRAQVAIPVLDFPIPGARDSAEAIRQGMALFDDLKHHPRIRIAFGPHA---PYTVSDDKLEQILVLTE 212 (451)
T ss_dssp HHHHHHHH--HTCEEEEEEEECSSCBTTBSSHHHHHHHHHHHHHHTTTCSSEEEEEEECC---GGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCeEEEEchhhCCCCccccCHHHHHHHHHHHHHHhcCCCceEEEEecCC---CCccCHHHHHHHHHHHH
Confidence 22222221 1222222111 111111 1 112333344433 24444555554432 23568899999999999
Q ss_pred hCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH
Q 015182 126 RYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 204 (411)
Q Consensus 126 ~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~ 204 (411)
++|+++++|+.+.. .+...+...| . ..++...+.+ ..+.++.+.|+...
T Consensus 213 ~~g~~v~~H~~e~~~~~~~~~~~~g-------------~-----------~~i~~~~~~g----~~~~~~~~~H~~~~-- 262 (451)
T 4dyk_A 213 ELDASIQMHVHETAFEVEQAMERNG-------------E-----------RPLARLHRLG----LLGPRFQAVHMTQV-- 262 (451)
T ss_dssp HHTCCEEEEESCCHHHHHHHHHHHS-------------S-----------CHHHHHHHTT----CCSTTEEEEECCCC--
T ss_pred HcCCcEEEEeCCCHHHHHHHHHHhC-------------C-----------CHHHHHHHCC----CCCCCeEEEECCCC--
Confidence 99999999997753 2222221111 0 0122222322 12567788888764
Q ss_pred HHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcc
Q 015182 205 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 284 (411)
Q Consensus 205 ~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~ 284 (411)
+.+.++.+++.|+ .+.+||...+.. +. ..+| +.++++.|+++++|||+.+.+...
T Consensus 263 ~~~~~~~l~~~g~--~v~~~p~s~~~~-------~~---~~~~---------~~~~~~~Gv~v~lgtD~~~~~~~~---- 317 (451)
T 4dyk_A 263 DNDDLAMLVETNS--SVIHCPESNLKL-------AS---GFCP---------VEKLWQAGVNVAIGTDGAASNNDL---- 317 (451)
T ss_dssp CHHHHHHHHHHTC--EEEECHHHHHHT-------TC---CCCC---------HHHHHHHTCCEEECCCCGGGSSCC----
T ss_pred CHHHHHHHHHcCC--EEEEChhhhhhc-------cC---Cccc---------HHHHHhCCCeEEEECCCCccCCCC----
Confidence 2244555666665 455677542211 00 1122 334567799999999975431100
Q ss_pred cCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCC
Q 015182 285 EGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDN 360 (411)
Q Consensus 285 ~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~ 360 (411)
++| .+......+.... ..+++++++++++|.|||+++|+ +++|+|++||.|||||||.+..+..+.
T Consensus 318 -~~~---------~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~ 387 (451)
T 4dyk_A 318 -DLL---------GETRTAALLAKAVYGQATALDAHRALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPV 387 (451)
T ss_dssp -CHH---------HHHHHHHHHHHHHHTCTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEECCSGGGCSC
T ss_pred -CHH---------HHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHcCCCCCCcCcCCCCcCCEEEEeCCCCccCCC
Confidence 011 1122222222221 45799999999999999999999 568999999999999999885443322
Q ss_pred CCCcccCCCCCCccCCce---EEeEEEEEEECCEEEEEcCcccCC
Q 015182 361 DHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 361 ~~~~~~~~~~~~p~~g~~---~~~~v~~ti~~G~~v~~~g~~~~~ 402 (411)
++|+.... ...+|..||++|++||++|+++..
T Consensus 388 ----------~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 422 (451)
T 4dyk_A 388 ----------YDPVSQLIYASGRDCVRHVWVGGRQLLDDGRLLRH 422 (451)
T ss_dssp ----------SCHHHHHHHHCCGGGEEEEEETTEEEEETTEESSS
T ss_pred ----------CCHHHHhhccCCCCCccEEEECCEEEEECCEECcC
Confidence 33443221 134699999999999999999754
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=235.45 Aligned_cols=229 Identities=12% Similarity=0.055 Sum_probs=143.4
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~ 174 (411)
.+++.+.+. +...+++++++++++.|+++|+++.+|+.+.. .+...+...| .
T Consensus 211 ~i~~~~~~~---~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g-------------~----------- 263 (468)
T 3lnp_A 211 LVQIGFGPH---APYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSESLETFN-------------K----------- 263 (468)
T ss_dssp CEEEEEEEC---CTTTSCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHHHS-------------S-----------
T ss_pred eEEEEEEcC---CCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC-------------C-----------
Confidence 455555443 22457899999999999999999999998753 2222221111 0
Q ss_pred HHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhH
Q 015182 175 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANK 254 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~ 254 (411)
..++...+.+ ..+.++.+.|+... +.+.++.+++.|+ .+.+||...+.. +. -.+|
T Consensus 264 ~~i~~~~~~g----~l~~~~~~~H~~~~--~~~~~~~l~~~g~--~v~~~p~s~~~~-------~~---~~~~------- 318 (468)
T 3lnp_A 264 RPTQRLADIG----FLNERVSCVHMTQV--DDGDIKILQKTGA--SIIHCPESNLKL-------AS---GFCP------- 318 (468)
T ss_dssp CHHHHHHHTT----CCSTTEEEEECCSC--CHHHHHHHHHHCC--EEEECHHHHHHT-------TC---CCCC-------
T ss_pred CHHHHHHHcC----CCCCCeEEEeccCC--CHHHHHHHHhcCC--EEEEChhhhhhc-------CC---CCCC-------
Confidence 0122223332 12567888888764 2244555666665 455677542211 10 0112
Q ss_pred HHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---hcCCCHHHHHHHHhHhHHHHh
Q 015182 255 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---KYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 255 ~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~~al~~~T~n~A~~l 331 (411)
+.++++.|+.++++||+.+.+... ++| .+..+...+.... ..+++++++++++|.|||+++
T Consensus 319 --~~~~~~~Gv~v~lgtD~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~~~A~~l 382 (468)
T 3lnp_A 319 --IAKLSAANIPLAIGTDGAASNNDL-----DMF---------SETKTAALLAKGVSQDASAIPAIEALTMATLGGARAL 382 (468)
T ss_dssp --HHHHHHTTCCEEECCCCTTSSCCC-----CHH---------HHHHHHHHHHHHHHTCTTSSCHHHHHHHHTHHHHHHT
T ss_pred --HHHHHHCCCeEEEECCCCcCCCCC-----CHH---------HHHHHHHHHhhhccCCCCcCCHHHHHHHHHHHHHHHh
Confidence 345577899999999975432100 011 1122222222211 457999999999999999999
Q ss_pred CC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCc---eEEeEEEEEEECCEEEEEcCcccCC
Q 015182 332 GQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGR---RLSGKVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 332 g~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~---~~~~~v~~ti~~G~~v~~~g~~~~~ 402 (411)
|+ +++|+|++||.|||||||.+..+..+.. +|+... ....+|..||++|++||++|+++..
T Consensus 383 g~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~----------~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 447 (468)
T 3lnp_A 383 GIDDITGSLKPGKAADIQAIDLNTLSSQPVF----------DPVSHMVYCTKSTQVSHVWVNGRCLLKNGELTTL 447 (468)
T ss_dssp TCTTTSSSCCTTSBCCEEEEECCSGGGCSCS----------CHHHHHHHSCCGGGEEEEEETTEEEEETTEESSS
T ss_pred CCCCCccccCCCCcCCEEEEeCCCCccCCcc----------CHHHHhhccCCCCCceEEEECCEEEEECCeECCC
Confidence 99 5689999999999999999866544432 222211 0135799999999999999998753
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=232.60 Aligned_cols=299 Identities=16% Similarity=0.134 Sum_probs=176.7
Q ss_pred CCceeecccccCCCCCCccCCh-----------HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceE
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGF-----------PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVD 68 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~-----------~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 68 (411)
+|||||+|+|+..++...++++ ...++.++++||||++|++ ++.+ ....++...+ .+.. ..+
T Consensus 57 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~---~~~~~~~~~~--~~~~~~~r 130 (408)
T 3be7_A 57 IPGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNVG-AANY---ADVSVRDAIE--RGVINGPT 130 (408)
T ss_dssp EECEEEEEECCSSCCCCSGGGTTCCTHHHHHHHHHHHHHHHTTTEEEEEECC-CSTT---HHHHHHHHHH--TTSSCCCE
T ss_pred CcCceeeeEcccCCCCcchhhhcCCHHHHHHHHHHHHHHHHHcCCCEEEeCC-Cccc---cCHHHHHHHH--CCCCCCCE
Confidence 6999999999972221111111 1257888999999999997 4322 1123333222 1110 012
Q ss_pred EEEEe-ee--c------CC-----------CccchHHHH----HHHHCCceEEEEeccCCC-----CCCCCCCCHHHHHH
Q 015182 69 VGFWG-GL--V------PE-----------NAYNASALE----ALLNAGVLGLKSFMCPSG-----INDFPMTNASHIKE 119 (411)
Q Consensus 69 ~~~~~-~~--~------~~-----------~~~~~~~~~----~~~~~g~~~ik~~~~~~~-----~~~~~~~~~~~l~~ 119 (411)
+.... .+ . +. .....+++. +..+.|+..+|++.+..- ..+.+.++.+++++
T Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~ 210 (408)
T 3be7_A 131 MLVSGPALGITGGHCDHNLLPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKA 210 (408)
T ss_dssp EEECCSCBBCTTSTTSCCCSCTTTCCCCTTBCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHH
T ss_pred EEEccceeeccCCCCccccccccccccCCcccCCHHHHHHHHHHHHhcCCCEEEEEecCCcCCCCCCCCCCCCCHHHHHH
Confidence 22211 00 0 00 011223333 334578889999875421 12345678999999
Q ss_pred HHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcC
Q 015182 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHL 199 (411)
Q Consensus 120 ~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~ 199 (411)
+++.|+++|+++.+|+.+... +..+++ . |.. .+.|+
T Consensus 211 ~~~~A~~~g~~v~~H~~~~~~--------------------------------i~~~~~----~-------g~~-~i~H~ 246 (408)
T 3be7_A 211 IVDEAHNHGMKVAAHAHGLIG--------------------------------IKAAIK----A-------GVD-SVEHA 246 (408)
T ss_dssp HHHHHHHTTCEEEEEECSHHH--------------------------------HHHHHH----H-------TCS-EEEEC
T ss_pred HHHHHHHCCCEEEEEeCCHHH--------------------------------HHHHHH----c-------CCC-EEEEC
Confidence 999999999999999987432 222222 1 322 47888
Q ss_pred CChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh------hhHHHHHHHHhcCCccEEcCCC
Q 015182 200 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA------ANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 200 ~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~------~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
... +.+.++.+++.|+.+.++..+...+.. .+....+.|+++.. .....++.++++|+.++++||+
T Consensus 247 ~~~--~~~~i~~~~~~g~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gTD~ 318 (408)
T 3be7_A 247 SFI--DDETIDMAIKNNTVLSMDIFVSDYILG------EGAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDA 318 (408)
T ss_dssp TTC--CHHHHHHHHHTTCEEECCCSTHHHHHT------TTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCB
T ss_pred CCC--CHHHHHHHHHCCCEEeeeecHHHHhhh------hccccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 865 456777787888754322111100000 01000111211111 1235677788889999999997
Q ss_pred CCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCC
Q 015182 274 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 353 (411)
Q Consensus 274 ~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~ 353 (411)
.+.+ .|....+. ..+.+.++|++++++++|.|||+++|++++|+|++||.|||||||.+
T Consensus 319 ~~~p---------------~~~~~~~~------~~~~~~gls~~~al~~~T~n~A~~lgl~~~G~i~~G~~ADlvvld~~ 377 (408)
T 3be7_A 319 GIFD---------------HGDNAKQF------AYMVEWGMTPLEAIQASTIKTATLFGIENIGQIKEGFDADIVGVIEN 377 (408)
T ss_dssp TTBC---------------TTCGGGHH------HHHHHTTCCHHHHHHTTTHHHHHHHTCSSCSSCCTTSBCCEEEESSC
T ss_pred CCCC---------------CchHHHHH------HHHHHcCCCHHHHHHHHHHHHHHHhCCCcccccCCCCccCEEEECCC
Confidence 4211 11111111 12345599999999999999999999976899999999999999987
Q ss_pred CeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 354 AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
+. . ++. + ..+|..||++|++||++.
T Consensus 378 p~-~-----~~~-----~--------~~~v~~v~~~G~~v~~~~ 402 (408)
T 3be7_A 378 PL-A-----NIR-----T--------LEEVAFVMKEGKVYKREG 402 (408)
T ss_dssp TT-T-----CGG-----G--------TTSCCEEEETTEEEEECC
T ss_pred ch-h-----hHH-----H--------hhceeEEEECCEEEeccc
Confidence 32 1 110 0 025889999999999874
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=241.06 Aligned_cols=309 Identities=17% Similarity=0.143 Sum_probs=177.7
Q ss_pred CCceeecccccCCCCCC-----------------ccC---------ChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHH
Q 015182 1 MPGLIDVHAHLDDPGRT-----------------EWE---------GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETL 54 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~-----------------~~~---------~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~ 54 (411)
+|||||+|+|+..++.. ..+ .+...++.++++||||++|++ +..+ ....+
T Consensus 70 ~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~---~~~~~ 145 (458)
T 2p9b_A 70 MPGLINAHTHLFSQGKPLNPKLATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLG-DVGY---EVVTL 145 (458)
T ss_dssp EECEEEEEECSCC-----------------------------CHHHHHHHHHHHHHHTTEEEEEESC-CSSS---HHHHH
T ss_pred ccceeeeeeccccccccccccccchhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHcCCcEEEeCC-CCcc---ccHHH
Confidence 69999999999765421 111 234577889999999999987 3322 11233
Q ss_pred HHHHHHHhcCC-ceEEEEEee---ecC-----------CCccc-hHHHHHHHHCCceEEEEeccCCC-------CCCCCC
Q 015182 55 KLKVDAAEKRI-YVDVGFWGG---LVP-----------ENAYN-ASALEALLNAGVLGLKSFMCPSG-------INDFPM 111 (411)
Q Consensus 55 ~~~~~~~~~~~-~~~~~~~~~---~~~-----------~~~~~-~~~~~~~~~~g~~~ik~~~~~~~-------~~~~~~ 111 (411)
+...+ .+.. ..++...+. .+. .+.++ ...+.++.+.|+..+|+|.++.. ..+.+.
T Consensus 146 ~~~~~--~g~~~g~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~~~~~~~ 223 (458)
T 2p9b_A 146 RDQID--AGQILGPRILASGPLMAIPEGHGAPLIALTSGTPEEARTAVAQNLKAGVNAIKIAATGGVTDAQEIGEAGSPQ 223 (458)
T ss_dssp HHHHH--TTSSCCCEEECCCSCEECCCSSCCCCEECCSCCHHHHHHHHHHHHHTTCSCEEEECSCCTTSCCCC------C
T ss_pred HHHHH--cCCCCCCeEEecccccccCCCCCccccCccCCCHHHHHHHHHHHHHcCCCEEEEEecCCcCCCCccCCCCCCc
Confidence 33322 1211 023321110 000 11111 22344455678889999876321 113356
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 015182 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 191 (411)
Q Consensus 112 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~ 191 (411)
+++++++++++.|+++|+++.+|+.+... +..+++. |
T Consensus 224 ~~~~~l~~~~~~a~~~g~~v~~H~~~~~~--------------------------------i~~~~~~-----------G 260 (458)
T 2p9b_A 224 MSVEQMRAICDEAHQYGVIVGAHAQSPEG--------------------------------VRRSLLA-----------G 260 (458)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECSHHH--------------------------------HHHHHHH-----------T
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeCCHHH--------------------------------HHHHHHc-----------C
Confidence 78999999999999999999999986432 2222221 2
Q ss_pred ceEEEEcCCChHHHHHHHHHHh------HCCCCEEEEccccc--ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhc
Q 015182 192 AHLHIVHLSDASSSLDLLMEAK------TNGDSITVETCPHY--LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 263 (411)
Q Consensus 192 ~~~~i~h~~~~~~~~~~i~~~~------~~g~~i~~~~~p~~--l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~ 263 (411)
. ..+.|+... +.+.++.++ +.|+.+.+..+|.. ++..... ..........++.+.......+++++++
T Consensus 261 ~-~~i~H~~~~--~~~~~~~~~~~~~~~~~g~~v~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (458)
T 2p9b_A 261 V-DTIEHGSVL--DDELIGMFRHNPNALRGYSALIPTLSAGLPLTLLGQDV-TGITDIQLENSKNVVGGMVSGARQAHEA 336 (458)
T ss_dssp C-SEEEECCCC--CHHHHHHHHCCTTSTTSCCEEECCHHHHHHHHHSCHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CEEEECCCC--CHHHHHHHhcccccccCCeEEEeecchhhHHHhhhccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 2 246787754 235677777 77865433332221 1111100 0000000000111112334577888899
Q ss_pred CCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh-cCCCHHHHHHHHhHhHHHHhCC-CCCCcccc
Q 015182 264 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKGAIAI 341 (411)
Q Consensus 264 G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~ 341 (411)
|+++++|||+.+ . + .+.+....+ +....+ .++|++++++++|.|||+++|+ +++|+|++
T Consensus 337 Gv~~~~gtD~~~-~----------~--~~~~~~~~e------~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~Gsi~~ 397 (458)
T 2p9b_A 337 GLMIGVGTDTGM-T----------F--VPQYATWRE------LELLVAYAGFSPAEALHAATAVNASILGVDAETGSLEV 397 (458)
T ss_dssp TCCBCCCCCTTS-T----------T--SCTTCHHHH------HHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTTSSSCCT
T ss_pred CCeEEEecCCCC-C----------C--CccccHHHH------HHHHHHhcCCCHHHHHHHHHHHHHHHhCCcCCCCccCC
Confidence 999999999731 1 1 111211111 122334 4899999999999999999999 56899999
Q ss_pred cCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc--Cccc
Q 015182 342 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE--GNHA 400 (411)
Q Consensus 342 G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~--g~~~ 400 (411)
||.|||||||.++. . ++. . ..+|..||++|++||++ +++.
T Consensus 398 Gk~ADlvvld~~p~-~-----~~~-----~--------~~~v~~v~v~G~~v~~~~~~~~~ 439 (458)
T 2p9b_A 398 GKSADLLVLNANPL-D-----DLR-----A--------LEHPALVIAAGHPVWRPGPKRFA 439 (458)
T ss_dssp TSBCCEEEESSCTT-T-----CGG-----G--------GTSCSEEEETTEECCSCCCCCCH
T ss_pred CCcCCEEEECCCch-h-----CHH-----H--------hccceEEEECCEEEecCchhhhh
Confidence 99999999998732 1 110 0 12588999999999987 5543
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=239.86 Aligned_cols=323 Identities=15% Similarity=0.051 Sum_probs=185.7
Q ss_pred CCceeecccccCCC------CCC-----------------ccCCh----HHHHHHHHcCCceeEecCCCCCCCCCCCHHH
Q 015182 1 MPGLIDVHAHLDDP------GRT-----------------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTET 53 (411)
Q Consensus 1 lPGlID~H~H~~~~------~~~-----------------~~~~~----~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~ 53 (411)
+|||||+|+|+... +.. ..+++ ..+++.++++||||++|++ +.. .+.
T Consensus 72 ~PG~ID~H~Hl~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~-~~~-----~~~ 145 (475)
T 2ood_A 72 VPGFIDGHIHLPQTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFT-SSS-----PVA 145 (475)
T ss_dssp EECEEEEEEEGGGTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEEC-CSS-----HHH
T ss_pred ecceecCcccHHhHhhcCCCCCCHHHHHHHhccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEec-ccC-----chh
Confidence 69999999998532 211 12233 3457788999999999986 321 233
Q ss_pred HHHHHHHHhc-CCceEEEEEe-ee-cCC----Cc-cchHHHHHHHH--CCceEEEEeccCCCCCCCCCCCHHHHHHHHHH
Q 015182 54 LKLKVDAAEK-RIYVDVGFWG-GL-VPE----NA-YNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSV 123 (411)
Q Consensus 54 ~~~~~~~~~~-~~~~~~~~~~-~~-~~~----~~-~~~~~~~~~~~--~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (411)
++...+..+. ..++.++... .. .+. .. +.+.++.++.+ .+...++.++.+. +.+.++++.++++++.
T Consensus 146 ~~~~~~~~~~~g~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~l~~~~~~ 222 (475)
T 2ood_A 146 TEELFEEASRRNMRVIAGLTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPR---FAFGASPELLKACQRL 222 (475)
T ss_dssp HHHHHHHHHHHTCCEEECCEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTEEEEEEEC---BGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEeeecccCCCcccccCHHHHHHHHHHHHHHhccCCceEEEEecc---ccCcCCHHHHHHHHHH
Confidence 4333332221 2222221110 10 111 00 12233444443 2333455555443 2235788999999999
Q ss_pred HHhC-CCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC
Q 015182 124 LARY-KRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 201 (411)
Q Consensus 124 a~~~-g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~ 201 (411)
|+++ |+++.+|+.+... +.......+ ..+ ..+++.++.++ .+.+..+.|+..
T Consensus 223 a~~~~g~~v~~H~~e~~~~~~~~~~~~g------------~~~----------~~~~~~~~~g~----~~~~~~i~H~~~ 276 (475)
T 2ood_A 223 KHEHPDCWVNTHISENPAECSGVLVEHP------------DCQ----------DYLGVYEKFDL----VGPKFSGGHGVY 276 (475)
T ss_dssp HHHCTTSEEEEECSCCHHHHHHHHHHCT------------TCS----------SHHHHHHTTTC----CSTTEEEECCTT
T ss_pred HHhCCCCcEEEeeCCChHHHHHHHHHcC------------CCc----------cHHHHHHHcCC----CCCCcEEEEeec
Confidence 9999 9999999986432 221111100 000 12233333221 256777888876
Q ss_pred hHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCc--cEEcCCCCCCChh
Q 015182 202 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPE 279 (411)
Q Consensus 202 ~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~--~~~~sD~~p~~~~ 279 (411)
. .+ +.++.+++.|+ .+++||.+... + + ...+| +++++++|++ +++|||+.+....
T Consensus 277 ~-~~-~~i~~~~~~g~--~~~~~P~~~~~----l---~---~~~~~---------~~~~~~~Gv~~~~~lgTD~~~~~~~ 333 (475)
T 2ood_A 277 L-SN-NEFRRMSKKGA--AVVFCPCSNLF----L---G---SGLFR---------LGRATDPEHRVKMSFGTDVGGGNRF 333 (475)
T ss_dssp C-CH-HHHHHHHHHTC--EEEECHHHHHH----T---T---CCCCC---------HHHHTCTTSCCEEEECCCBTTBSCC
T ss_pred C-CH-HHHHHHHHcCC--EEEEChhhhhh----c---c---cCcCC---------HHHHHhCCCCCcEEEEccCCCCCCc
Confidence 5 22 55666666675 56678864221 0 1 01233 3456788999 9999998653210
Q ss_pred hhhcccCCccccCCCCchhhhHHHHHHHH-------------------HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcc
Q 015182 280 LKLLDEGNFLKAWGGISSLQFVLPVTWSY-------------------GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAI 339 (411)
Q Consensus 280 ~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------------~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I 339 (411)
++|. +......+.. ..+.+++++++++++|.|||+++|+ +++|+|
T Consensus 334 ------~~~~---------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~GsL 398 (475)
T 2ood_A 334 ------SMIS---------VLDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGNF 398 (475)
T ss_dssp ------CHHH---------HHHHHHHHHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTTSSSC
T ss_pred ------CHHH---------HHHHHHHHhcccchhccCCcccccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCceee
Confidence 1111 0011000100 1236899999999999999999999 568999
Q ss_pred cccCCccEEEEcCCCeeEeCCCCCcc------c----CCCCCCccCCceE---EeEEEEEEECCEEEEEcCc
Q 015182 340 AIGNHADLVVWEPEAEFELDNDHPVH------M----KHPSISAYLGRRL---SGKVLATISRGNLVYKEGN 398 (411)
Q Consensus 340 ~~G~~ADlvv~d~~~~~~~~~~~~~~------~----~~~~~~p~~g~~~---~~~v~~ti~~G~~v~~~g~ 398 (411)
++||+|||||||.+..+.++.+ .+. + +.. ++||.+..+ .++|..||++|++||++.+
T Consensus 399 ~~Gk~ADlvvld~~~~~~~~~~-~~~~~~~~~s~~~~~~~-~~p~~~~~~~~~~~~V~~t~v~G~~v~~~~~ 468 (475)
T 2ood_A 399 EPGKEADFVALDPNGGQLAQPW-HQSLIADGAGPRTVDEA-ASMLFAVMMVGDDRCVDETWVMGKRLYKKSE 468 (475)
T ss_dssp CTTSBCCEEEECTTCSSTTHHH-HHTTC--CCSCCSHHHH-HHHHHHHHHHCCGGGEEEEEETTEEEEECC-
T ss_pred CCCCccCEEEEeCCCccccccc-cccccccccccccccch-hhHHHHHHhhCCCCCeeEEEECCEEEEECCC
Confidence 9999999999999865433221 100 0 001 567766554 4689999999999999865
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=236.75 Aligned_cols=228 Identities=12% Similarity=0.073 Sum_probs=139.4
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~ 176 (411)
+++.+.+. +...++++.++++++.|+++|+++.+|+.+.......+...+ .+ .
T Consensus 204 ~~~~~~~~---~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~-------------~~-----------~ 256 (456)
T 3ls9_A 204 VRIALGPC---GVPYDKPELFEAFAQMAADYDVRLHTHFYEPLDAGMSDHLYG-------------MT-----------P 256 (456)
T ss_dssp EEEEECCC---CTTTSCHHHHHHHHHHHHHHTCEEEEEECCTTHHHHHHHHHS-------------SC-----------H
T ss_pred eEEEEecC---CCCCCCHHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHhC-------------CC-----------H
Confidence 44444443 234678999999999999999999999987654321111110 00 1
Q ss_pred HHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHH
Q 015182 177 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 256 (411)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~ 256 (411)
++...+.+ ..+.++.+.|+... . .+.++.+++.|+ .+.+||.+.... +. -.+|
T Consensus 257 ~~~~~~~g----~~~~~~~i~H~~~~-~-~~~~~~l~~~g~--~~~~~p~s~~~l-------~~---~~~~--------- 309 (456)
T 3ls9_A 257 WRFLEKHG----WASDRVWLAHAVVP-P-REEIPEFADAGV--AIAHLIAPDLRM-------GW---GLAP--------- 309 (456)
T ss_dssp HHHHHHTT----CSSTTEEEEECCSC-C-GGGHHHHHHHTC--EEEECHHHHHHT-------TC---CCCC---------
T ss_pred HHHHHHcC----CCCCCcEEEeccCC-C-HHHHHHHHHcCC--EEEEChhHHhhc-------CC---Ccch---------
Confidence 12222322 12556777887753 1 233444555565 555788542211 10 0122
Q ss_pred HHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-----HhcCCCHHHHHHHHhHhHHHHh
Q 015182 257 LWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-----RKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 257 l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~l~~~~al~~~T~n~A~~l 331 (411)
+.++++.|+++++|||+.+.+... ++| .+......+... .+++++++++++++|.|||+++
T Consensus 310 ~~~~~~~Gv~v~lgtD~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~l 375 (456)
T 3ls9_A 310 IREYLDAGITVGFGTTGSASNDGG-----NLL---------GDLRLAALAHRPADPNEPEKWLSARELLRMATRGSAECL 375 (456)
T ss_dssp HHHHHHTTCEEEECCCCTTSSCCC-----CHH---------HHHHHHHHHTGGGSTTCGGGSCCHHHHHHHTTHHHHHHT
T ss_pred HHHHHHCCCcEEEECCCCccCCCC-----CHH---------HHHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHh
Confidence 344577899999999975432110 001 111111111100 1127999999999999999999
Q ss_pred CCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE---EeEEEEEEECCEEEEEcCcccCC
Q 015182 332 GQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAPA 402 (411)
Q Consensus 332 g~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~---~~~v~~ti~~G~~v~~~g~~~~~ 402 (411)
|++++|+|++||.|||||||.+..+..+. ++|+....+ ..+|..||++|++||++|+++..
T Consensus 376 g~~~~G~l~~G~~ADlvv~d~~~~~~~~~----------~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~ 439 (456)
T 3ls9_A 376 GRPDLGVLEEGRAADIACWRLDGVDRVGV----------HDPAIGLIMTGLSDRASLVVVNGQVLVENERPVLA 439 (456)
T ss_dssp TCTTSSCCSTTSBCCEEEEESCSGGGTTB----------SSHHHHHHHCCSBCCCSEEEETTEEEEETTEESSS
T ss_pred CCCCCCccCCCCccCEEEEeCCCCccCCC----------CChHHHhhccCCCCCeeEEEECCEEEEECCEeCCC
Confidence 99449999999999999999886543321 334332211 24699999999999999998753
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=229.53 Aligned_cols=313 Identities=13% Similarity=0.037 Sum_probs=179.6
Q ss_pred CCceeecccccCCCCC------------------------CccCChHH----HHHHHHcCCceeEecCCCCCCCCCCCHH
Q 015182 1 MPGLIDVHAHLDDPGR------------------------TEWEGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTE 52 (411)
Q Consensus 1 lPGlID~H~H~~~~~~------------------------~~~~~~~~----~~~~a~~~GvTtv~d~~~~~~~~~~~~~ 52 (411)
+|||||+|+|+..... ...++++. +...++++||||++|+. . ..+
T Consensus 72 ~PGlID~H~Hl~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~------~~~ 144 (472)
T 4dzh_A 72 MPGLVNAHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENY-F------FAD 144 (472)
T ss_dssp EECEEEEEECGGGGGGTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEEC-S------CHH
T ss_pred EECccccccChhhHHhccccCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcc-c------CHH
Confidence 6999999999964211 01111222 34457899999999986 1 122
Q ss_pred HHHHHHHHHhcCCceEEEEEe-eecCC---C-ccchHHHHHHHH--CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 53 TLKLKVDAAEKRIYVDVGFWG-GLVPE---N-AYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~-~~~~~---~-~~~~~~~~~~~~--~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
.+.+... +...+..+.... ..... . .+.+..+.++.+ .+...+++.+.+.. ...+++++++++++.|+
T Consensus 145 ~~~~a~~--~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~A~ 219 (472)
T 4dzh_A 145 VQAAVYK--QHGFRALVGAVIIDFPTAWASSDDEYFARAGELHDQWRDDPLISTAFAPHA---PYTVNDANFERVRMLAD 219 (472)
T ss_dssp HHHHHHH--HTTCEEEEEEEECSSCCSSCSSHHHHHHHHHHHHHHHTTCSSEEEEEEECC---TTTSCHHHHHHHHHHHH
T ss_pred HHHHHHH--HhCCeEEEEecccCCCcccccCHHHHHHHHHHHHHHhCCCCceEEEEecCC---CCCCCHHHHHHHHHHHH
Confidence 2222211 122222222111 11110 1 122333444432 23344555555432 23568999999999999
Q ss_pred hCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH
Q 015182 126 RYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 204 (411)
Q Consensus 126 ~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~ 204 (411)
++|+++.+|+.+... +...+...+ .+ .++...+.+ ..+.++.+.|+...
T Consensus 220 ~~g~~v~iH~~e~~~~~~~~~~~~g-------------~~-----------~i~~~~~~g----~~~~~~~~~H~~~l-- 269 (472)
T 4dzh_A 220 QLDMPVHLHTHETAQEVADSVAQYG-------------QR-----------PLARLDRLG----LVNDRLIAVHMTQL-- 269 (472)
T ss_dssp HHTCCEEEEESCCHHHHHHHHHHHS-------------SC-----------HHHHHHHHT----CCSTTEEEEECCSC--
T ss_pred HCCCeEEEEeCCCHHHHHHHHHHhC-------------CC-----------HHHHHHHcC----CCCCCeEEEeccCC--
Confidence 999999999976432 222111111 01 112222222 12567888898765
Q ss_pred HHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcc
Q 015182 205 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 284 (411)
Q Consensus 205 ~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~ 284 (411)
+.+.++.+++.|+ .+.+||...+.. +. -.+| +.++++.|+++++|||+.+.+..
T Consensus 270 ~~~~i~~l~~~g~--~v~~~p~s~~~~-------~~---~~~~---------~~~~~~~Gv~v~lgtD~~~~~~~----- 323 (472)
T 4dzh_A 270 TEAEIHLCAERGV--SVVHCPESNLKL-------AS---GFCP---------ACALQRASVNLAIGTDGCASNND----- 323 (472)
T ss_dssp CHHHHHHHHHHTC--EEEECHHHHHHT-------TC---CCCC---------HHHHHHTTCEEEECCCCTTSSCC-----
T ss_pred CHHHHHHHHHcCC--EEEEChHHHHhc-------CC---CCcc---------HHHHHHCCCCEEEECCCCcCCCC-----
Confidence 2344555666675 445677542211 10 0122 34557789999999997532110
Q ss_pred cCCccccCCCCchh-hhHHHHHHHHH---HhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeC
Q 015182 285 EGNFLKAWGGISSL-QFVLPVTWSYG---RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELD 359 (411)
Q Consensus 285 ~~~~~~~~~g~~~~-~~~~~~~~~~~---~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~ 359 (411)
...+ +.++...+... ...+++++++++++|.|||+++|+ +++|+|++||.|||||||.+..+..+
T Consensus 324 ----------~~~~~~~~~a~~~~~~~~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~ 393 (472)
T 4dzh_A 324 ----------LDMFSENRTAAILAKAVANDATALDAATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQP 393 (472)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCS
T ss_pred ----------CCHHHHHHHHHHHhhhhcCCCCcCCHHHHHHHHHHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCCccCC
Confidence 0111 11222222111 134799999999999999999999 56899999999999999988654332
Q ss_pred CCCCcccCCCCCCccCCce---EEeEEEEEEECCEEEEEcCcccC
Q 015182 360 NDHPVHMKHPSISAYLGRR---LSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 360 ~~~~~~~~~~~~~p~~g~~---~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
. ++|+.... ...+|..||++|++||++|+++.
T Consensus 394 ~----------~~~~~~l~~~~~~~~V~~v~v~G~~v~~~g~~~~ 428 (472)
T 4dzh_A 394 L----------HHVLSQLIYAAGRHQVTDVWIAGKPKLVQRELID 428 (472)
T ss_dssp C----------SCHHHHHHHTCCGGGEEEEEETTEEEEETTEETT
T ss_pred c----------cCHHHHHhhcCCCCCceEEEECCEEEEECCEECc
Confidence 2 33433221 13469999999999999999874
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=229.80 Aligned_cols=313 Identities=17% Similarity=0.190 Sum_probs=181.1
Q ss_pred CCceeecccccCCCC---CC----------------------ccCChHHH----HHHHHcCCceeEecCCCCC-CCCCCC
Q 015182 1 MPGLIDVHAHLDDPG---RT----------------------EWEGFPSG----TKAAAAGGITTLIDMPLNS-DPSTIS 50 (411)
Q Consensus 1 lPGlID~H~H~~~~~---~~----------------------~~~~~~~~----~~~a~~~GvTtv~d~~~~~-~~~~~~ 50 (411)
+|||||+|+|+.... .. ..++++.. .+.++++||||++|++ +. .+.
T Consensus 58 ~PGlID~H~Hl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~~~--- 133 (430)
T 1ra0_A 58 IPPFVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHV-DVSDAT--- 133 (430)
T ss_dssp ESCEEEEEECTTTTTCTTSSSCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEE-ECCSTT---
T ss_pred cccccccccchhhhhhcCCCcCCCCCCHHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHhcCccEEeecc-ccCChH---
Confidence 699999999996431 10 11333333 3445799999999987 43 232
Q ss_pred HHHHHHHHHHHhc-CCceEEEEEeeecCC----CccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHH
Q 015182 51 TETLKLKVDAAEK-RIYVDVGFWGGLVPE----NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125 (411)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~ 125 (411)
...++...+..+. +..+++..+. +... ..+..+.++++.+.|...++.+ +.. ...+.+++++++++++.|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~-~~~~~~~~~~l~~~~~~A~ 209 (430)
T 1ra0_A 134 LTALKAMLEVKQEVAPWIDLQIVA-FPQEGILSYPNGEALLEEALRLGADVVGAI--PHF-EFTREYGVESLHKTFALAQ 209 (430)
T ss_dssp CHHHHHHHHHHHHHTTTCEEEEEE-ECTTCSSSSTTHHHHHHHHHHTTCSEECCC--GGG-SSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhEEEEEEe-cCCcccccCchHHHHHHHHHHhCCCeEeee--ecc-cccccccHHHHHHHHHHHH
Confidence 1233333322211 3345544321 1110 1122334666666665444322 110 0000157899999999999
Q ss_pred hCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH
Q 015182 126 RYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 204 (411)
Q Consensus 126 ~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~ 204 (411)
++|+++.+|+.+.. .... .+...++.+.+.+ .+.++++.|+... .
T Consensus 210 ~~g~~v~~H~~e~~~~~~~----------------------------~~~~~~~~~~~~g-----~~~~~~i~H~~~~-~ 255 (430)
T 1ra0_A 210 KYDRLIDVHCDEIDDEQSR----------------------------FVETVAALAHHEG-----MGARVTASHTTAM-H 255 (430)
T ss_dssp HHTCEEEEEECCSSCTTCC----------------------------HHHHHHHHHHHHT-----CGGGEEEEECGGG-G
T ss_pred HcCCCEEEEECCCCchhHH----------------------------HHHHHHHHHHHhC-----CCCCEEEEecccc-c
Confidence 99999999997643 2111 1122233333331 1557888888754 2
Q ss_pred HH------HHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCC
Q 015182 205 SL------DLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTV 277 (411)
Q Consensus 205 ~~------~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~ 277 (411)
+. +.++.++++|+ .+++||+. +++... .. ..|+.+.... +++++++|+++++|||+.+.+
T Consensus 256 ~~~~~~~~~~i~~~~~~gv--~v~~~p~~~~~~~~~----~~----~~p~~~~~~~---~~~~~~~Gv~~~lgTD~~~~~ 322 (430)
T 1ra0_A 256 SYNGAYTSRLFRLLKMSGI--NFVANPLVNIHLQGR----FD----TYPKRRGITR---VKEMLESGINVCFGHDGVFDP 322 (430)
T ss_dssp GSCHHHHHHHHHHHHHHTC--EEEECHHHHHHHTTT----TC----CSSCCCCCCC---HHHHHHTTCCEEECCBCSSBT
T ss_pred cCChHhHHHHHHHHHHcCC--EEEECchhhhhhccc----cC----CCCCcCCCCC---HHHHHHCCCEEEEeCCCCccc
Confidence 22 47777777775 45678863 222211 01 1344444333 455677899999999986311
Q ss_pred hhhhhcccCCccccCCC-Cchh-hhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCe
Q 015182 278 PELKLLDEGNFLKAWGG-ISSL-QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 355 (411)
Q Consensus 278 ~~~k~~~~~~~~~~~~g-~~~~-~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~ 355 (411)
|. +.+ ...+ +..+...+... ..+++++++++++|.|||+++|+++ |+|++||.|||||||.+.+
T Consensus 323 ----------~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~T~~~A~~lg~~~-G~i~~G~~ADlvv~d~~~~ 388 (430)
T 1ra0_A 323 ----------WY--PLGTANMLQVLHMGLHVCQL-MGYGQINDGLNLITHHSARTLNLQD-YGIAAGNSANLIILPAENG 388 (430)
T ss_dssp ----------TB--SCCCCCHHHHHHHHHHHTTC-CSHHHHHGGGGGGTHHHHHHTTCSS-CSSCTTSBCCEEEESSSSH
T ss_pred ----------CC--CCCCCCHHHHHHHHHHHHcc-CCcccHHHHHHHHHHHHHHHhCCCC-cccCCCCcCCEEEEcCCCh
Confidence 00 000 0111 11111111000 0125899999999999999999965 9999999999999998754
Q ss_pred eEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 356 ~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
+. .+. ..++|..||++|++||++++++
T Consensus 389 ~~-----~~~-------------~~~~v~~v~~~G~~v~~~~~~~ 415 (430)
T 1ra0_A 389 FD-----ALR-------------RQVPVRYSVRGGKVIASTQPAQ 415 (430)
T ss_dssp HH-----HHH-------------HTCCCSEEEETTEEEEECCCCC
T ss_pred hH-----HHh-------------ccCcceEEEECCEEEecCCcce
Confidence 31 110 1246899999999999999876
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=222.80 Aligned_cols=280 Identities=14% Similarity=0.045 Sum_probs=162.2
Q ss_pred HHHHHHcCCceeEecCCCCCCCCC--CCHHHHHHHHHHHhcCCceEEEEEeeecC---CCc-cchHHHHHHHHCCceEEE
Q 015182 25 GTKAAAAGGITTLIDMPLNSDPST--ISTETLKLKVDAAEKRIYVDVGFWGGLVP---ENA-YNASALEALLNAGVLGLK 98 (411)
Q Consensus 25 ~~~~a~~~GvTtv~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~g~~~ik 98 (411)
..+.++++||||++++. +..+.. ...+.+.+..+.... .+.+.... +.. ... +....++++.+.|+..++
T Consensus 110 ~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 185 (403)
T 2qt3_A 110 HAHMQVLHGTLYTRTHV-DVDSVAKTKAVEAVLEAKEELKD--LIDIQVVA-FAQSGFFVDLESESLIRKSLDMGCDLVG 185 (403)
T ss_dssp HHHHHHHTTEEEEEEEE-ECSTTTTTHHHHHHHHHHHHHTT--TCEEEEEE-ECTTCTTTSTTHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHcCCcEEEEEE-cccCccccchHHHHHHHHHHhhc--ceeEEEEE-cCCcccccCcchHHHHHHHHhcCCCeEE
Confidence 45678899999998765 322211 112222222222222 22222211 111 011 122344555666766555
Q ss_pred EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHH
Q 015182 99 SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178 (411)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~ 178 (411)
. +.+. .....++++++++++.|+++|+++.+|+.+..... ..+++.+++
T Consensus 186 ~-~~p~---~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~---------------------------~~~~~~~~~ 234 (403)
T 2qt3_A 186 G-VDPA---TRENNVEGSLDLCFKLAKEYDVDIDYHIHDIGTVG---------------------------VYSINRLAQ 234 (403)
T ss_dssp C-BCTT---TTTSCHHHHHHHHHHHHHHTTCEEEEEECCCHHHH---------------------------HHHHHHHHH
T ss_pred E-ecCC---CCCCChHHHHHHHHHHHHHcCCCeEEEeCCcccch---------------------------hHHHHHHHH
Confidence 3 2222 12244569999999999999999999998753210 012344455
Q ss_pred HHhhhccCCCCCCceEEEEcCCChHHH------HHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChh
Q 015182 179 VAKDTRTDGPAEGAHLHIVHLSDASSS------LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 252 (411)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~h~~~~~~~------~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~ 252 (411)
.+.+.+. +.++.+.|+... .. .+.++.+++.|+.+ .+||.. . .
T Consensus 235 ~~~~~g~-----~~~~~i~H~~~~-~~~~~~~~~~~~~~l~~~g~~v--~~~p~~-----------~----------~-- 283 (403)
T 2qt3_A 235 KTIENGY-----KGRVTTSHAWCF-ADAPSEWLDEAIPLYKDSGMKF--VTCFSS-----------T----------P-- 283 (403)
T ss_dssp HHHHTTC-----TTSEEEEECTHH-HHSCHHHHHHHHHHHHHHTCEE--EEETTT-----------C----------C--
T ss_pred HHHHcCC-----CCCeEEEehhhh-ccCChhhHHHHHHHHHHcCCEE--EECCCC-----------C----------C--
Confidence 5544411 347889998864 32 26677777777644 445531 0 0
Q ss_pred hHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHh
Q 015182 253 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 253 ~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~l 331 (411)
....+++++++|+.++++||+... || .+.|.......+........ ..+++++++++++|.|||+++
T Consensus 284 ~~~~~~~~~~~Gv~v~lgtD~~~~----------~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~l 351 (403)
T 2qt3_A 284 PTMPVIKLLEAGINLGCASDNIRD----------FW--VPFGNGDMVQGALIETQRLELKTNRDLGLIWKMITSEGARVL 351 (403)
T ss_dssp TTCCHHHHHHTTCEEEEECCSCSS----------SS--CSCCCCCHHHHHHHHHHHTTCCSHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCHHHHHHcCCcEEEeCCCCCC----------CC--CCCCCCCHHHHHHHHHHHhCcCCccCHHHHHHHHHHHHHHhc
Confidence 011234567789999999997421 12 12232111111111110000 112689999999999999999
Q ss_pred CCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCccc
Q 015182 332 GQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 400 (411)
Q Consensus 332 g~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~ 400 (411)
|++++|+|++||.|||||||.+.++. . .....+|..||++|++||++|+++
T Consensus 352 g~~~~g~i~~G~~ADlvv~d~~~~~~-----~-------------~~~~~~v~~v~v~G~~v~~~g~~~ 402 (403)
T 2qt3_A 352 GIEKNYGIEVGKKADLVVLNSLSPQW-----A-------------IIDQAKRLCVIKNGRIIVKDEVIV 402 (403)
T ss_dssp TCGGGCSSSTTSBCCEEEESSSSHHH-----H-------------HHHCCCEEEEEETTEEEEESSSBC
T ss_pred CCCcccCCCCCCcCCEEEEcCCChHH-----H-------------hhcCCCccEEEECCEEEecCCccc
Confidence 99556999999999999999874321 1 111346999999999999999875
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-27 Score=228.82 Aligned_cols=315 Identities=16% Similarity=0.091 Sum_probs=175.1
Q ss_pred CCceeecccccCCC---CC----C-----------------ccCChHH----HHHHHHcCCceeEecCCCCCCCCCCCHH
Q 015182 1 MPGLIDVHAHLDDP---GR----T-----------------EWEGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTE 52 (411)
Q Consensus 1 lPGlID~H~H~~~~---~~----~-----------------~~~~~~~----~~~~a~~~GvTtv~d~~~~~~~~~~~~~ 52 (411)
+|||||+|+|+... +. . ..++++. ..+.++++||||++|++ +. ..+
T Consensus 66 ~PGlID~H~H~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~-----~~~ 139 (439)
T 2i9u_A 66 IPGMNDLHAHASQYKNLGIGMDKELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFA-TL-----HKD 139 (439)
T ss_dssp EECEEEEEEEGGGGGGTTCCCSSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEEC-CS-----CHH
T ss_pred EecceecccccchHhhhCCcCCCCHHHHHHhcccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEcc-cc-----ccc
Confidence 69999999999752 21 0 1112222 23578999999999987 32 122
Q ss_pred HHHHHHHHH-hcCCceEEEE-Eeee-cCC----Cc-cchHHHHHHHH---CCceEEEEeccCCCCCCCCCCCHHHHHHHH
Q 015182 53 TLKLKVDAA-EKRIYVDVGF-WGGL-VPE----NA-YNASALEALLN---AGVLGLKSFMCPSGINDFPMTNASHIKEGL 121 (411)
Q Consensus 53 ~~~~~~~~~-~~~~~~~~~~-~~~~-~~~----~~-~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~ 121 (411)
.+....+.. +...++.+.. ..+. .+. .. +.+.+..++.+ .+...+|+++.+.. ...++.+.+++++
T Consensus 140 ~~~~~~~~~~~~g~r~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~ 216 (439)
T 2i9u_A 140 STIELFNMLIKSGIGAYVGKVNMDYNCPDYLTENYITSLNDTEEIILKYKDKSNIVKPIITPRF---VPSCSNELMDGLG 216 (439)
T ss_dssp HHHHHHHHHHHHTCEEEEECEECCSSCCTTSCCCHHHHHHHHHHHHHHHTTTCSSEEECBEECC---GGGCCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEeeeccccCCcccchhHHHHHHHHHHHHHHHhCCCCceEEEEecCC---cCcCCHHHHHHHH
Confidence 233222222 1122222211 1110 011 00 11223333333 23344677665432 1346889999999
Q ss_pred HHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-ceEEEEcC
Q 015182 122 SVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG-AHLHIVHL 199 (411)
Q Consensus 122 ~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~i~h~ 199 (411)
+.|+++|+++.+|+.+.. .++..+... ..+|.. ++.+.+.++ .+ .++.+.|+
T Consensus 217 ~~a~~~g~~v~~H~~~~~~~~~~~~~~~-------------~~~~~~---------~~~~~~~g~----~~~~~~~i~H~ 270 (439)
T 2i9u_A 217 KLSYKYRLPVQSHLSENLDEIAVVKSLH-------------KKSNFY---------GEVYDKFGL----FGNTPTLMAHC 270 (439)
T ss_dssp HHHHHHTCCEEEEESCCHHHHHHHHHHC-------------TTCSSH---------HHHHHHTTC----SSSSCEEEEEC
T ss_pred HHHHhcCCcEEEeecCChHHHHHHHHHh-------------CCCCCH---------HHHHHHcCC----CCCCCeEEEEE
Confidence 999999999999998743 222111100 111111 111222211 13 56667787
Q ss_pred CChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChh
Q 015182 200 SDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE 279 (411)
Q Consensus 200 ~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~ 279 (411)
... +.+.++.+++.|+ .+++||.+.+.. +. ..|| +++++++|++++++||+.+...
T Consensus 271 ~~~--~~~~~~~l~~~g~--~~~~~p~~~~~l-------~~---~~~~---------~~~~~~~Gv~~~lgtD~~~~~~- 326 (439)
T 2i9u_A 271 IHS--SKEEINLIKRNNV--TIVHCPTSNFNL-------GS---GMMP---------VRKYLNLGINVVLGSDISAGHT- 326 (439)
T ss_dssp CSC--CHHHHHHHHHTTC--EEEECHHHHHHT-------TC---CCCC---------HHHHHHTTCEEEECCCBTTBCC-
T ss_pred ecC--CHHHHHHHHHcCC--EEEECccchhhc-------cc---ccCC---------HHHHHHCCCcEEEecCCCCCCC-
Confidence 654 2245566666674 556788653210 10 1233 3356788999999999864211
Q ss_pred hhhcccCCccccCCCCchhhhHHHHHHHHHH-------hcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcC
Q 015182 280 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-------KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEP 352 (411)
Q Consensus 280 ~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~ 352 (411)
.+.+ .+..+...++... ..++|++++++++|.|||+++| ++|+|++||+|||||||.
T Consensus 327 -----~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg--~~Gsl~~G~~ADlvvld~ 390 (439)
T 2i9u_A 327 -----CSLF---------KVIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGSFFG--KVGSFEEGYDFDALVIND 390 (439)
T ss_dssp -----SCHH---------HHHHHHHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHHHTTTS--SCSSCSTTCBCCEEEECC
T ss_pred -----cCHH---------HHHHHHHHHhccccccccCCCCCCCHHHHHHHHHHHHHHHhc--cCCccCCCCccCEEEEeC
Confidence 0001 1112222122211 3679999999999999999999 699999999999999999
Q ss_pred CCeeEeCCCCCcccCCCCCCccCCceEE---eEEEEEEECCEEEEEcCc
Q 015182 353 EAEFELDNDHPVHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEGN 398 (411)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~p~~g~~~~---~~v~~ti~~G~~v~~~g~ 398 (411)
+..+.++ + .. ++||.+..+. .+|..||++|++||+++.
T Consensus 391 ~~~~~~~-~-~~------~~~~~~~~~~~~~~~v~~v~v~G~~v~~~~~ 431 (439)
T 2i9u_A 391 SNLYPED-Y-DL------TERLERFIYLGDDRNIMKRYVCGNEIFGPKF 431 (439)
T ss_dssp TTSCGGG-S-CH------HHHHHHHHHHCCGGGEEEEEETTEEEC----
T ss_pred CCccccC-C-Cc------cCHHHHheecCCCCCeeEEEECCEEEeeCCC
Confidence 8654431 1 11 4455443222 379999999999998763
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=216.19 Aligned_cols=306 Identities=21% Similarity=0.262 Sum_probs=174.6
Q ss_pred CCceeecccccCCCCCC---ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeee-c
Q 015182 1 MPGLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL-V 76 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~---~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 76 (411)
+|||||+|+|+...+.. ...+.....+.++++||||+++++ ++.+.....+.+....+.........+...... .
T Consensus 61 ~PG~iD~H~H~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~ 139 (390)
T 1onw_A 61 CPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTRALNEEGISAWMLTGAYHV 139 (390)
T ss_dssp EECEEEEEECTTCCBCTTSGGGBCCCCCHHHHHHTTEEEEEECC-CSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCS
T ss_pred CcCeeEeeECccccCccccccccCHHHHHHHHHHCCeeEEecCC-CcccccCcHHHHHHHHHHHHhcCCceEEeccccCC
Confidence 69999999998643211 011122346788999999999998 665554555555443332222121122222211 1
Q ss_pred CCC--ccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCC------cEEEecCCcccchhhhhhc
Q 015182 77 PEN--AYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKR------PLLVHAEMEKGSERHVKLE 148 (411)
Q Consensus 77 ~~~--~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~------~v~~H~~~~~~~~~~~~~~ 148 (411)
+.. ...+..-..+. ..+.++|+.+.+.. .+..+.++++++++.++..+. .+.+|+.....
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~---~~~~~~~~l~~~~~~a~~~~~~~~~~g~~~~h~~~~~~-------- 207 (390)
T 1onw_A 140 PSRTITGSVEKDVAII-DRVIGVKCAISDHR---SAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKK-------- 207 (390)
T ss_dssp SCCCSSSCHHHHHHHC-TTEEEEEEEESSTT---SCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTT--------
T ss_pred CchhhhhhhcchhhhH-HHhhcceeeecCCC---CCCCCHHHHHHHHHHHhhhhhhhccCceEEEEeCCCHH--------
Confidence 111 11111111111 22334466655432 234678999999888876543 36678632211
Q ss_pred cCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE---EEEcCCChHHHH--HHHHHHhHCCCCEEEEc
Q 015182 149 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL---HIVHLSDASSSL--DLLMEAKTNGDSITVET 223 (411)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~i~h~~~~~~~~--~~i~~~~~~g~~i~~~~ 223 (411)
.++.+.++++.. +.++ +..|+... ..+ +.++.+++.+. +.+ .
T Consensus 208 -----------------------~~~~~~~~~~~g-------~~~v~~l~~~h~~~~-~~~~~~~~~~~~~~~~-~~~-~ 254 (390)
T 1onw_A 208 -----------------------ALQPIYDLLENC-------DVPISKLLPTHVNRN-VPLFEQALEFARKGGT-IDI-T 254 (390)
T ss_dssp -----------------------TTHHHHHHHHTC-------CCCGGGEEEECGGGS-HHHHHHHHHHHHTTCC-EEE-E
T ss_pred -----------------------HHHHHHHHHhcc-------CCceEEeeccccccC-HHHHHHHHHHHhcCCc-ccc-c
Confidence 012223333322 2222 23565433 222 44555544442 211 1
Q ss_pred ccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC-c--cEEcCCCCCCChhhhhcccCCccccCCCCchhhh
Q 015182 224 CPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH-I--DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300 (411)
Q Consensus 224 ~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~-~--~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~ 300 (411)
++ ..|+ ..+...+|+++++|+ + ++++||+.+....... .....+.|+++.+.
T Consensus 255 ~~------------------~~~~---~~~~~~l~~~~~~g~~~d~i~l~TD~~~~~~~~~~----~~~~~~~g~~~~~~ 309 (390)
T 1onw_A 255 SS------------------IDEP---VAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDD----EGNLTHIGVAGFET 309 (390)
T ss_dssp TT------------------CCSS---SCHHHHHHHHHHTTCCGGGEEEECCBTCC-----------------CCCCSHH
T ss_pred cc------------------cCCC---CcCHHHHHHHHHcCCCccceEEEccCCCCCcccCC----ccccccccCCCHHH
Confidence 11 1122 135678999999997 4 4999998754221100 01113446666666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEE
Q 015182 301 VLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLS 380 (411)
Q Consensus 301 ~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~ 380 (411)
.+..++......+++++++++++|.|||++||++++|+|++|++|||+|||++ |
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~t~npA~~~gl~~~G~i~~G~~ADlvv~d~~--~------------------------ 363 (390)
T 1onw_A 310 LLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPE--L------------------------ 363 (390)
T ss_dssp HHHHHHHHHHHHCCCHHHHHGGGTHHHHHHTTCTTCSSCCTTSBCCEEEECTT--C------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhHHHHHHhCCCCCcccCCCCcCCEEEEcCC--C------------------------
Confidence 66665544446789999999999999999999976899999999999999954 1
Q ss_pred eEEEEEEECCEEEEEcCcccCCCCCc
Q 015182 381 GKVLATISRGNLVYKEGNHAPAACGS 406 (411)
Q Consensus 381 ~~v~~ti~~G~~v~~~g~~~~~~~g~ 406 (411)
.|..|+++|++||++|+++.+ |+
T Consensus 364 -~v~~v~~~G~~v~~~g~~~~~--g~ 386 (390)
T 1onw_A 364 -RIEQVYARGKLMVKDGKACVK--GT 386 (390)
T ss_dssp -CEEEEEETTEEEEETTEESSC--CT
T ss_pred -cEEEEEECCEEEEECCeEccc--cc
Confidence 368999999999999999865 54
|
| >4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-27 Score=230.13 Aligned_cols=295 Identities=21% Similarity=0.244 Sum_probs=180.6
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEec-------CCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEe
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID-------MPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 73 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (411)
+|||||+|+|+..|+. .++++++||||+++ ++ ++.+.......++.+.+.++ ...+++.+++
T Consensus 130 ~PG~ID~HvH~~~Pg~---------~~aAl~gGvTTvv~gg~~p~~~~-n~~p~~~~~~~l~~~l~aa~-~~~v~~~~~g 198 (570)
T 4ac7_C 130 TAGGIDTHVHFINPDQ---------VDVALANGITTLFGGGTGPAEGS-KATTVTPGPWNIEKMLKSTE-GLPINVGILG 198 (570)
T ss_dssp EECEEEEEEECCCTTH---------HHHHHHTTEEEEEEECSSSCHHH-HHSSCCCHHHHHHHHHHHHT-TCSSEEEEEE
T ss_pred eeCEEecccccCCcch---------HHHHHhcCCeEEEecCcCccccc-CCcCcCCcHHHHHHHHHHhh-hCCeeEEEEe
Confidence 5999999999988753 36899999999994 33 33344344556666655443 4678998887
Q ss_pred eecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCC
Q 015182 74 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 153 (411)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~ 153 (411)
.... +.+.++.++.+.|+.++|+|..+ ..+++.+++++++|+++|+++.+|+++.....
T Consensus 199 ~~~~---~~l~el~el~~aGa~gfK~~~~~-------~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~g----------- 257 (570)
T 4ac7_C 199 KGHG---SSIAPIMEQIDAGAAGLKIHEDW-------GATPASIDRSLTVADEADVQVAIHSDTLNEAG----------- 257 (570)
T ss_dssp ECCC---SSHHHHHHHHHHTCCEEEEEGGG-------CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSC-----------
T ss_pred ccCC---cCHHHHHHHHHcCCCeEeeccCC-------CCCHHHHHHHHHHHHHcCCEEEEEcCCcchhh-----------
Confidence 5432 34667888888999999998754 35789999999999999999999999643211
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEc-ccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVET-CPHYLAF 230 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~-~p~~l~~ 230 (411)
.+...++... +..+|..|.... ....++++.+.+. ++.++. +|...+.
T Consensus 258 ------------------~Vedalea~~---------Gr~ih~~HiEgag~~hapd~i~~~~~~--~vlps~t~Pt~p~~ 308 (570)
T 4ac7_C 258 ------------------FLEDTLRAIN---------GRVIHSFHVEGAGGGHAPDIMAMAGHP--NVLPSSTNPTRPFT 308 (570)
T ss_dssp ------------------CHHHHHHHHT---------TCCEEETTTTSTTSSSTTTGGGGGGST--TEEEBCCGGGSSCB
T ss_pred ------------------HHHHHHHHhC---------CCcceeEeeeccccccChHHHHHhccC--CccccccCCCCCcc
Confidence 0222333222 556666665532 0223556655443 355443 4431110
Q ss_pred c---ccccCCCCcceEEcCC-----------CCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCc
Q 015182 231 S---AEEIPDGDTRFKCAPP-----------IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296 (411)
Q Consensus 231 ~---~~~~~~~~~~~~~~p~-----------lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~ 296 (411)
. ++.+.-.-......|. +| .+...+...+++.|++++++||. |.... .|-.
T Consensus 309 ~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir-~~~i~a~~~L~d~G~~v~~gSD~-p~~~~-------------~ge~ 373 (570)
T 4ac7_C 309 VNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIR-PETIAAEDILHDLGIISMMSTDA-LAMGR-------------AGEM 373 (570)
T ss_dssp TTHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSC-HHHHHHHHHHHHTTSSCBCCCCB-TTSSC-------------TTCH
T ss_pred cchhHHhhhheeeecccCccccchhHHHHhhhh-hhhcccccchhhcCCEEEEECcc-cccCC-------------cCcc
Confidence 0 0000000000000011 11 11122333456779999999995 32110 0000
Q ss_pred hhhhHHHHHHHH-H----------HhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCc
Q 015182 297 SLQFVLPVTWSY-G----------RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPV 364 (411)
Q Consensus 297 ~~~~~~~~~~~~-~----------~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~ 364 (411)
....+...... . .+++++++++|+++|.|||+++|+ +++|+|++||.|||||||.+.
T Consensus 374 -~~~~~~~a~~~~~~rg~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~---------- 442 (570)
T 4ac7_C 374 -VLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKF---------- 442 (570)
T ss_dssp -HHHHHHHHHHHHHHHCSCTTCCTTCCHHHHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGG----------
T ss_pred -cCcHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECchh----------
Confidence 00000000000 0 123478999999999999999999 668999999999999999651
Q ss_pred ccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 365 HMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 365 ~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
|. .+|..||++|++||+.
T Consensus 443 ---------~~-----~~v~~t~~~G~~v~~~ 460 (570)
T 4ac7_C 443 ---------FG-----VKADRVIKGGIIAYAQ 460 (570)
T ss_dssp ---------TT-----TSCSEEEETTEEEEEE
T ss_pred ---------cc-----CceEEEEECCEEEEcc
Confidence 11 1478999999999985
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=230.77 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=85.4
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHhCCC
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~lg~~ 334 (411)
.+++++++|+++++|||+.+..... ++| .+..+...++... ..+++++++++++|.|||+++|++
T Consensus 263 ~~~~~~~~Gv~~~lgtD~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~ 328 (406)
T 1p1m_A 263 PVQRMIEHGMKVTLGTDGAASNNSL-----NLF---------FEMRLASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFK 328 (406)
T ss_dssp CHHHHHHTTCEEEECCCCTTTTSCC-----CHH---------HHHHHHHHHHHTTCTTSSCHHHHHHHHTHHHHHHHTCS
T ss_pred cHHHHHhCCCeEEEECCCCcCCCCC-----CHH---------HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3567788899999999986543210 011 1223333332222 457999999999999999999996
Q ss_pred CCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 335 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 335 ~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
+ |+|++||.|||||||.+.++.++.+ ++.. ...|... .++|..||++|++|| +|+++.
T Consensus 329 ~-G~l~~G~~ADlvv~d~~~~~~~~~~-~~~~----~~~~~~~--~~~v~~v~v~G~~v~-~g~~~~ 386 (406)
T 1p1m_A 329 S-GKIEEGWNADLVVIDLDLPEMFPVQ-NIKN----HLVHAFS--GEVFATMVAGKWIYF-DGEYPT 386 (406)
T ss_dssp C-SSCCTTSBCCEEEEECCSGGGCSGG-GHHH----HHHHTCC--SCCSEEEETTEEEEE-TTBCTT
T ss_pred C-cccCCCCcccEEEEeCCccccCCcc-ChHH----HheEecC--CCCceEEEECCEEEE-CCeeCC
Confidence 6 9999999999999999876655433 2111 0011110 357999999999999 998864
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=227.54 Aligned_cols=295 Identities=21% Similarity=0.244 Sum_probs=180.4
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEec-------CCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEe
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID-------MPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 73 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (411)
+|||||+|+|+..|+. .++++++||||+++ ++ ++.+.......++.+.+.++ ...+++.+++
T Consensus 130 ~PG~ID~HvH~~~Pg~---------~~aAl~gGvTTvv~gg~~p~~~~-n~~p~~~~~~~l~~~l~aa~-~~~v~~~~~g 198 (570)
T 4ubp_C 130 TAGGIDTHVHFINPDQ---------VDVALANGITTLFGGGTGPAEGS-KATTVTPGPWNIEKMLKSTE-GLPINVGILG 198 (570)
T ss_dssp EECEEEEEEECCCTTH---------HHHHHHTTEEEEEEECCSSCHHH-HHSSCCCHHHHHHHHHHHHT-TCSSEEEEEE
T ss_pred eeCEEEcccCCCCcch---------HHHHHhcCCeEEEecCccccccC-CCcCCCCcHHHHHHHHHHhh-hCCeeEEEEe
Confidence 5999999999988753 36899999999994 33 33344344556666655443 4678998887
Q ss_pred eecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCC
Q 015182 74 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 153 (411)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~ 153 (411)
.... +.+.++.++.+.|+.++|+|..+ ..+++.+++++++|+++|+++.+|+++.....
T Consensus 199 ~~~~---~~l~el~el~~aGa~gfK~~~~~-------~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~g----------- 257 (570)
T 4ubp_C 199 KGHG---SSIAPIMEQIDAGAAGLKIHEDW-------GATPASIDRSLTVADEADVQVAIHSDTLNEAG----------- 257 (570)
T ss_dssp ECCC---SSHHHHHHHHHHTCCEEEEEGGG-------CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSC-----------
T ss_pred ccCC---cCHHHHHHHHHcCCCeEeeccCC-------CCCHHHHHHHHHHHHHcCCEEEEEcCCcchhh-----------
Confidence 5432 34667888888999999998754 35789999999999999999999999643211
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh--HHHHHHHHHHhHCCCCEEEEc-ccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA--SSSLDLLMEAKTNGDSITVET-CPHYLAF 230 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~--~~~~~~i~~~~~~g~~i~~~~-~p~~l~~ 230 (411)
.+...++... +..+|..|.... ....++++.+.+. ++.++. +|...+.
T Consensus 258 ------------------~Vedalea~~---------Gr~ih~~HiEgag~~hapd~i~~~~~~--~vlps~t~Pt~p~~ 308 (570)
T 4ubp_C 258 ------------------FLEDTLRAIN---------GRVIHSFHVEGAGGGHAPDIMAMAGHP--NVLPSSTNPTRPFT 308 (570)
T ss_dssp ------------------CHHHHHHHHT---------TCCEEETTTTSTTSSSTTTGGGGGGST--TEEEBCCSTTSSCB
T ss_pred ------------------HHHHHHHHhC---------CCceeEEEecccccccChHHHHHhccC--CccccccCCCCCcc
Confidence 0222333222 555666665532 0223556655443 355443 4431110
Q ss_pred c---ccccCCCCcceEEcCC-----------CCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCc
Q 015182 231 S---AEEIPDGDTRFKCAPP-----------IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296 (411)
Q Consensus 231 ~---~~~~~~~~~~~~~~p~-----------lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~ 296 (411)
. ++.+.-.-......|. +| .+...+...+++.|++++++||. |.... .|-.
T Consensus 309 ~n~~~e~ld~l~v~hhl~~~i~~D~~~a~~Rir-~~~i~a~~~L~d~G~~v~~gSD~-p~~~~-------------~ge~ 373 (570)
T 4ubp_C 309 VNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIR-PETIAAEDILHDLGIISMMSTDA-LAMGR-------------AGEM 373 (570)
T ss_dssp TTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSC-HHHHHHHHHHHHTTSSCBCCCCB-TTSSC-------------TTCH
T ss_pred cchhHHhhhheeeecccCccccchhHHHHhhhh-hhccccccchhhcCCEEEEECcc-cccCC-------------cCcc
Confidence 0 0000000000000010 11 11122333456779999999995 32110 0000
Q ss_pred hhhhHHHHHHHH-H----------HhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCc
Q 015182 297 SLQFVLPVTWSY-G----------RKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPV 364 (411)
Q Consensus 297 ~~~~~~~~~~~~-~----------~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~ 364 (411)
....+...... . .+++++++++|+++|.|||+++|+ +++|+|++||.|||||||.+.
T Consensus 374 -~~~~~~~a~~~~~~rg~l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~---------- 442 (570)
T 4ubp_C 374 -VLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKF---------- 442 (570)
T ss_dssp -HHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGG----------
T ss_pred -cCcHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECccc----------
Confidence 00000000000 0 123478999999999999999999 668999999999999999651
Q ss_pred ccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 365 HMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 365 ~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
|. .+|..||++|++||+.
T Consensus 443 ---------~~-----~~v~~t~~~G~~v~~~ 460 (570)
T 4ubp_C 443 ---------FG-----VKADRVIKGGIIAYAQ 460 (570)
T ss_dssp ---------TT-----TSCSEEEETTEEEEEE
T ss_pred ---------cc-----CCeeEEEECCEEEEec
Confidence 11 1478999999999985
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=217.74 Aligned_cols=296 Identities=18% Similarity=0.154 Sum_probs=171.3
Q ss_pred CCceeecccccCCCCC-C-------ccCCh----HHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcC-Cce
Q 015182 1 MPGLIDVHAHLDDPGR-T-------EWEGF----PSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR-IYV 67 (411)
Q Consensus 1 lPGlID~H~H~~~~~~-~-------~~~~~----~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 67 (411)
+|||||+|+|+...+. . ..+.. ...++.++++||||++|++ ...+ ....++...+ .+. ...
T Consensus 62 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~~~---~~~~~~~~~~--~g~~~~~ 135 (418)
T 2qs8_A 62 LPGLMDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQVG-DSGL---VAISLRDAIN--SGKLAGP 135 (418)
T ss_dssp EECEEEEEECTTCCCCCTTTSCSCCCHHHHHHHHHHHHHHHHHTTEEEEEECC-CSSS---HHHHHHHHHH--TTSSCCC
T ss_pred CCCeeeeeeccccCCCCCchhhhcCCHHHHHHHHHHHHHHHHHcCCCEEEeCC-CCcc---ccHHHHHHHH--CCCCCCC
Confidence 6999999999976532 1 11111 1256788999999999986 3211 1123333322 121 111
Q ss_pred EEEEEe-------ee-c--C-------C-------CccchHHHHH----HHHCCceEEEEeccCCC-----CCCCCCCCH
Q 015182 68 DVGFWG-------GL-V--P-------E-------NAYNASALEA----LLNAGVLGLKSFMCPSG-----INDFPMTNA 114 (411)
Q Consensus 68 ~~~~~~-------~~-~--~-------~-------~~~~~~~~~~----~~~~g~~~ik~~~~~~~-----~~~~~~~~~ 114 (411)
++.... +. . + . .....+++.+ ..+.|+..+|+|++... ..+...+++
T Consensus 136 r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~ 215 (418)
T 2qs8_A 136 RIFAAGKTIATTGGHADPTNGKAVDDYDYPVPEQGVVNGPYEVYAAVRQRYKDGADGIKITVTGGVLSVAKSGQNPQFTQ 215 (418)
T ss_dssp EEEECCSCBEETTCTTCTTTTCCGGGCCCCCGGGTEECSHHHHHHHHHHHHHHTCSEEEEECBCCSSSSSSCSSCBCSCH
T ss_pred eEEecCccccccCCCccccccccccccccccccccccCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCCCCcccCCH
Confidence 221111 00 0 0 0 0111223332 34468889999876421 113456789
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015182 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 194 (411)
Q Consensus 115 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (411)
++++++++.|+++|+++.+|+.+... +..+++. |. .
T Consensus 216 ~~l~~~~~~A~~~g~~v~~H~~~~~~--------------------------------i~~~~~~-----------g~-~ 251 (418)
T 2qs8_A 216 EEVDAVVSAAKDYGMWVAVHAHGAEG--------------------------------MKRAIKA-----------GV-D 251 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHH--------------------------------HHHHHHH-----------TC-S
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHHH--------------------------------HHHHHHc-----------CC-C
Confidence 99999999999999999999986432 2222221 22 2
Q ss_pred EEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCC-h-------hhHHHHHHHHhcCCc
Q 015182 195 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD-A-------ANKEKLWEALMDGHI 266 (411)
Q Consensus 195 ~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~-~-------~~~~~l~~~l~~G~~ 266 (411)
.++|+... +.+.++.++++|+.+ +|.+...+. +...+. ....|+.+. . .....++.++++|+.
T Consensus 252 ~i~H~~~~--~~~~i~~l~~~gv~v----~p~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~ 322 (418)
T 2qs8_A 252 SIEHGTFM--DLEAMDLMIENGTYY----VPTISAGEF--VAEKSK-IDNFFPEIVRPKAASVGPQISDTFRKAYEKGVK 322 (418)
T ss_dssp EEEECTTC--CHHHHHHHHHHTCEE----ECCHHHHHH--HHHHTT-STTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCC--CHHHHHHHHHCCCEE----eeeechHHH--hhhhcc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 36777654 234555666667532 344321110 000000 001233321 1 123467778888999
Q ss_pred cEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCc
Q 015182 267 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHA 345 (411)
Q Consensus 267 ~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~A 345 (411)
+++|||+ |... .+....+ +..+.+.+++++++++++|.|||+++|+ +++|+|++||.|
T Consensus 323 v~~gTD~-~~~~--------------~~~~~~e------~~~~~~~gls~~eal~~~T~n~A~~lg~~~~~G~l~~G~~A 381 (418)
T 2qs8_A 323 IAFGTDA-GVQK--------------HGTNWKE------FVYMVENGMPAMKAIQSATMETAKLLRIEDKLGSIESGKLA 381 (418)
T ss_dssp BCCCCCB-TTBC--------------TTCTTHH------HHHHHHTTCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBC
T ss_pred EEEeCCC-CcCC--------------cchHHHH------HHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCcccCCCCcc
Confidence 9999996 3311 0100011 1223456999999999999999999999 578999999999
Q ss_pred cEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 346 Dlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
||||||.|+.. ++. ...+|..||++|+++..
T Consensus 382 Dlvvld~~~~~------~~~-------------~~~~i~~v~~~G~~~~~ 412 (418)
T 2qs8_A 382 DLIAVKGNPIE------DIS-------------VLENVDVVIKDGLLYEG 412 (418)
T ss_dssp CEEEESSCTTT------CGG-------------GGGGEEEEEETTEEEEC
T ss_pred CEEEECCChhh------CHH-------------HhcCccEEEECCEEEec
Confidence 99999987421 110 01258999999997763
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=212.95 Aligned_cols=190 Identities=17% Similarity=0.170 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
.++.++++++++.|+++|+++.+|+.+..... .++. +.+.
T Consensus 219 ~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~-----------------------------~~~~----~~~~------- 258 (416)
T 2q09_A 219 GFSLAQTEQVYLAADQYGLAVKGHMDQLSNLG-----------------------------GSTL----AANF------- 258 (416)
T ss_dssp SBCHHHHHHHHHHHHHTTCEEEEEESSSCCCS-----------------------------HHHH----HHHT-------
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEECCCCchH-----------------------------HHHH----HHHc-------
Confidence 56899999999999999999999987643100 1111 1122
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
|. ..+.|+... +.+.++.+++.|+ .+.+||.+.+... + ...+| ++.++++|++++++
T Consensus 259 g~-~~~~H~~~~--~~~~~~~~~~~g~--~~~~~p~~~~~~~------~---~~~~~---------~~~~~~~Gv~~~~g 315 (416)
T 2q09_A 259 GA-LSVDHLEYL--DPEGIQALAHRGV--VATLLPTAFYFLK------E---TKLPP---------VVALRKAGVPMAVS 315 (416)
T ss_dssp TC-SEEEECTTC--CHHHHHHHHHHTC--EEEECHHHHHHTT------C---CCCCC---------HHHHHHTTCCEEEC
T ss_pred CC-CEEeecccC--CHHHHHHHHHcCC--eEEEcCccHHhhc------c---ccccC---------HHHHHHCCCeEEEe
Confidence 22 235676643 2245556656564 5667886543210 0 01122 34567889999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEE
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVV 349 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv 349 (411)
||+.+... +. .. .+..+.......++|++++++++|.|||+++|+ +++|+|++||.|||||
T Consensus 316 tD~~~~~~--------~~-------~~---~~~~~~~~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv 377 (416)
T 2q09_A 316 SDINPGTA--------PI-------VS---LRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQEQLGQLRVGMLADFLV 377 (416)
T ss_dssp CCCBTTTB--------CC-------CC---HHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEE
T ss_pred cCCCCccC--------CC-------CC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCccceecCCCCCccEEE
Confidence 99754321 00 00 111222223467899999999999999999999 5689999999999999
Q ss_pred EcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 350 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 350 ~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
||.+... ..|+... ..+|..||++|++||+++
T Consensus 378 ld~~~~~--------------~~~~~~~--~~~v~~v~v~G~~v~~~~ 409 (416)
T 2q09_A 378 WNCGHPA--------------ELSYLIG--VDQLVSRVVNGEETLHGE 409 (416)
T ss_dssp ESSSCTT--------------HHHHSCS--CCCEEEEEETTEECCC--
T ss_pred ECCCchh--------------hhhhhhc--cCcceEEEECCEEEEeCC
Confidence 9987432 2233221 357999999999999775
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=214.33 Aligned_cols=233 Identities=13% Similarity=0.033 Sum_probs=136.5
Q ss_pred eEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHH
Q 015182 95 LGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI 173 (411)
Q Consensus 95 ~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~ 173 (411)
..++..+.+.. .+.++++.++++++.|+++|+++.+|+.+... ++......+ . .
T Consensus 226 ~~v~~~l~p~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~~-------------~---------~ 280 (476)
T 4aql_A 226 SRVKPIVTPRF---SLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYP-------------S---------Y 280 (476)
T ss_dssp SSEEECBEECC---TTTSCHHHHHHHHHHHHHTTCCEEEEESCSHHHHHHHHHHCT-------------T---------S
T ss_pred CceEEEEeCCc---CCcCCHHHHHHHHHHHHHcCCceEEEecCCHHHHHHHHHHhC-------------C---------C
Confidence 34666665542 24578999999999999999999999876542 221111110 0 0
Q ss_pred HHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhh
Q 015182 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 253 (411)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~ 253 (411)
...++...+.++ .+.+..+.|+... .+ +.++.+++.|+ ...+||..-..- +. -.+|
T Consensus 281 ~~~~~~~~~~g~----l~~~~~~~H~~~l-~~-~~~~~l~~~g~--~v~~~P~sn~~l-------~~---g~~p------ 336 (476)
T 4aql_A 281 KNYTSVYDKNNL----LTNKTVMAHGCYL-SA-EELNVFHERGA--SIAHCPNSNLSL-------SS---GFLN------ 336 (476)
T ss_dssp SSHHHHHHTTTC----CSTTEEEEECTTC-CH-HHHHHHHHHTC--EEEECHHHHHHT-------TC---CCCC------
T ss_pred CCHHHHHHHcCC----CCCCEEEEeCCCC-CH-HHHHHHHHcCC--EEEECchhhhhh-------Cc---chHH------
Confidence 011222333321 2557778888754 22 33445555564 455777542111 10 0122
Q ss_pred HHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH------HhcCCCHHHHHHHHhHhH
Q 015182 254 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG------RKYGVTLEQLASWWSERP 327 (411)
Q Consensus 254 ~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~l~~~~al~~~T~n~ 327 (411)
+.++++.|+.+++|||..+.... +.+ .+.+....+... ...+++++++++++|.||
T Consensus 337 ---~~~~~~~Gv~v~lGtD~~~~~~~------~~~---------~~~~~a~~~~~~~~~~~~~~~~l~~~~al~~aT~~~ 398 (476)
T 4aql_A 337 ---VLEVLKHEVKIGLGTDVAGGYSY------SML---------DAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGG 398 (476)
T ss_dssp ---HHHHHHTTCEEEECCCTTTSSCC------CHH---------HHHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHH
T ss_pred ---HHHHHHCCCcEEEeCCCCCCCCC------CHH---------HHHHHHHHHHhhhhcccCCCCcCCHHHHHHHHHHHH
Confidence 23456779999999997432110 001 011111111111 125799999999999999
Q ss_pred HHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCC----cccCCCCCCccCCceEE---eEEEEEEECCEEEEEcC
Q 015182 328 AKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHP----VHMKHPSISAYLGRRLS---GKVLATISRGNLVYKEG 397 (411)
Q Consensus 328 A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~----~~~~~~~~~p~~g~~~~---~~v~~ti~~G~~v~~~g 397 (411)
|+++|+ +++|+|++||.|||||||.+.+.. +.. . +.+... ++|+...... ..|..||++||+||+.+
T Consensus 399 A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~-p~~-~~~~~~~~~~~-~~~~~~~v~~~~~~~V~~v~v~G~~v~~~~ 473 (476)
T 4aql_A 399 SQALGLDGEIGNFEVGKEFDAILINPKASDS-PID-LFYGDFFGDIS-EAVIQKFLYLGDDRNIEEVYVGGKQVVPFS 473 (476)
T ss_dssp HHHTTCTTTSSSCCTTSBCCEEEECTTCTTC-SCC-CCTHHHHSSST-THHHHHHHHHCCGGGEEEEEETTEEEECCC
T ss_pred HHHhCCCCCcceeCCCCCCCEEEEcCCCCCC-ccc-cccccccCCch-hcHHHHHhhcCCCCCccEEEECCEEEecCC
Confidence 999999 568999999999999999884321 110 0 000011 3444433222 24999999999999864
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=209.00 Aligned_cols=193 Identities=17% Similarity=0.163 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
.++.++++++++.|+++|+++.+|+....... .++ .+.+.
T Consensus 226 ~~~~e~l~~~~~~a~~~g~~v~~H~~~~~~~~-----------------------------~~~----~~~~~------- 265 (421)
T 2bb0_A 226 VFTVSQSRRYLQKAAEAGFGLKIHADEIDPLG-----------------------------GAE----LAGKL------- 265 (421)
T ss_dssp SBCHHHHHHHHHHHHHTTCEEEEEECSSSCCS-----------------------------HHH----HHHHT-------
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeccccccC-----------------------------HHH----HHHHc-------
Confidence 46889999999999999999999986432100 111 11122
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
+ +..+.|+... +.+.++++++.|+ .+..||.+.+... +. ..+ .++.++++|+++++|
T Consensus 266 g-~~~~~H~~~~--~~~~i~~~~~~g~--~~~~~p~~~~~l~------~~---~~~---------~~~~~~~~Gv~v~lg 322 (421)
T 2bb0_A 266 K-AVSADHLVGT--SDEGIKKLAEAGT--IAVLLPGTTFYLG------KS---TYA---------RARAMIDEGVCVSLA 322 (421)
T ss_dssp T-CSEEEECTTC--CHHHHHHHHHHTC--EEEECHHHHHHTT------CC---CCC---------CHHHHHHTTCCEEEC
T ss_pred C-CcEEhhhhcC--CHHHHHHHHHcCC--eEEECCchhhhhc------cc---ccc---------hHHHHHHCCCeEEEe
Confidence 2 1246777654 2244555556564 5667886433110 00 011 234567889999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEE
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVV 349 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv 349 (411)
||+.|... +. . . .+..+...+..+++|++++|+++|.|||+++|+ +++|+|++||+|||||
T Consensus 323 tD~~~~~~--------~~-----~--~---~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~~~Gsl~~Gk~ADlvv 384 (421)
T 2bb0_A 323 TDFNPGSS--------PT-----E--N---IQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVI 384 (421)
T ss_dssp CCBBTTTB--------CC-----C--C---HHHHHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTTTSSCCSTTSBCCEEE
T ss_pred CCCCCCCC--------cc-----c--C---HHHHHHHHhcccCCCHHHHHHHHHHHHHHHhCccCCccccCCCCcCCEEE
Confidence 99744211 00 0 0 111111123467899999999999999999999 5699999999999999
Q ss_pred EcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc-Cccc
Q 015182 350 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE-GNHA 400 (411)
Q Consensus 350 ~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~-g~~~ 400 (411)
||.+.+..+ ++.. ...+|..||++|++||++ |+++
T Consensus 385 ld~~~~~~~--------------~~~~--~~~~v~~t~v~G~~v~~~~g~~~ 420 (421)
T 2bb0_A 385 WQAPNYMYI--------------PYHY--GVNHVHQVMKNGTIVVNREGAIL 420 (421)
T ss_dssp ESSSSTTHH--------------HHSC--SSCCEEEEEETTEEEEEC-----
T ss_pred ECCcccccC--------------HhHc--CCCceEEEEECCEEEEeCCcccc
Confidence 998743211 1110 023699999999999986 6554
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=215.57 Aligned_cols=242 Identities=12% Similarity=0.066 Sum_probs=136.0
Q ss_pred EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcc-c-c-ccccCCCCHHHHHHHH
Q 015182 97 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR-S-Y-STYLKTRPPSWEEAAI 173 (411)
Q Consensus 97 ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~p~~~e~~~~ 173 (411)
++..+.+.. ...++++.++++++.|+++|+++.+|+.+.......+.+. .+.. . + ..+...+|..
T Consensus 172 i~~~~~~~~---~~~~s~e~l~~~~~~A~~~g~~v~~H~~E~~~e~~~~~~~---~g~~~~~~~~~~~~~~~~~------ 239 (427)
T 3v7p_A 172 FKAAVAIHS---PYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKG---SGEFAKFFKEFLNQTRPVN------ 239 (427)
T ss_dssp EEEEEEECC---TTTBCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHS---CSHHHHHHHHHTCCCSCSS------
T ss_pred eEEEEecCC---CCcCCHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHh---cCcchhhhhhhccCCCccc------
Confidence 455444432 2357899999999999999999999987654322221110 0000 0 0 0000011110
Q ss_pred HHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhh
Q 015182 174 RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 253 (411)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~ 253 (411)
...+..... .+.+..+.|+... . .+.++.+++.| +.+.+||...... +. ..+|++.
T Consensus 240 -~~~~~l~~~------~~~~~~~~H~~~~-~-~~~~~~l~~~g--~~~~~~p~s~~~~-------~~---~~~~~~~--- 295 (427)
T 3v7p_A 240 -DTKSFLELF------KELHTLFVHMVWA-N-EEEIQTIASYN--AHIIHCPISNRLL-------GN---GVLDLEK--- 295 (427)
T ss_dssp -CHHHHHHTT------TTSEEEEEECTTC-C-HHHHHHHHHSE--EEEEECHHHHHHT-------TC---CCCCTTT---
T ss_pred -CHHHHHhhh------cCCCEEEEECCCC-C-HHHHHHHHHcC--CEEEECHHHHHHh-------cC---CCCCHHH---
Confidence 011111110 1667888898865 2 24455565655 4566788642211 11 1245543
Q ss_pred HHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 254 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 254 ~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
+ +|+.+++|||..+.+... ++| .+.+....+.......++++++++++|.|||+++|+
T Consensus 296 -------~-~Gv~v~lgtD~~~~~~~~-----~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~ 353 (427)
T 3v7p_A 296 -------I-KSIPYAIATDGLSSNYSL-----NMY---------EELKAALFVHPNKEATTFAKELIIRATKAGYDALGF 353 (427)
T ss_dssp -------T-TTSCEEECCCCTTSCSCC-----CHH---------HHHHHHHHHSTTSCHHHHHHHHHHHHTHHHHHHHTC
T ss_pred -------H-CCCeEEEeCCCCCCCCCC-----CHH---------HHHHHHHHhccCCCcccCHHHHHHHHHHHHHHHhCC
Confidence 2 699999999964322100 001 111211111111112356899999999999999999
Q ss_pred CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCCCCCcc
Q 015182 334 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSP 407 (411)
Q Consensus 334 ~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~~~g~~ 407 (411)
+ +|+|++|+.|||||+|.+.++..+.+ +|+......++|..||++|++||++|+++..+.++.
T Consensus 354 ~-~g~l~~G~~Ad~~~~d~~~~~~~~~~----------~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~~~~~~~ 416 (427)
T 3v7p_A 354 E-GGEIAVGKDADMQLIDLPEGLTNVED----------LYLHVILHTTKPKKVYIQGEEHVREAENLYFQSHHH 416 (427)
T ss_dssp S-CSSCCTTSBCCEEEEECCTTCCCGGG----------HHHHHHHHCSSCSEEEETTEEEEC---CCCBC----
T ss_pred C-CceeCCCCccCEEEEcCCCccCCCcc----------chHHHhcccCCccEEEECCEEEEECCcccCCccccc
Confidence 7 89999999999999999876554332 222211124579999999999999999987665553
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-25 Score=211.42 Aligned_cols=78 Identities=26% Similarity=0.364 Sum_probs=63.1
Q ss_pred CchhhhHHHHHHHHHHh-cCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCC
Q 015182 295 ISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 372 (411)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~ 372 (411)
.++.+..+...++.+.+ .+++++++++++|.|||++||+ +++|+|++|++|||||||.+.
T Consensus 314 ~~g~~~~l~~~l~~~~~~~~~~~~~~l~~aT~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~~------------------ 375 (396)
T 2vhl_A 314 LAGSILKMNEGARHMREFTNCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSDC------------------ 375 (396)
T ss_dssp BCSBCCCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECTTC------------------
T ss_pred ccccccCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCcCCCceeCCCCcCCEEEECCCC------------------
Confidence 33333344444544444 5899999999999999999999 568999999999999999651
Q ss_pred ccCCceEEeEEEEEEECCEEEEEcCcc
Q 015182 373 AYLGRRLSGKVLATISRGNLVYKEGNH 399 (411)
Q Consensus 373 p~~g~~~~~~v~~ti~~G~~v~~~g~~ 399 (411)
+|..||++|++||+++++
T Consensus 376 ---------~v~~v~~~G~~v~~~~~~ 393 (396)
T 2vhl_A 376 ---------EVILTICRGNIAFISKEA 393 (396)
T ss_dssp ---------CEEEEEETTEEEEECSCC
T ss_pred ---------cEEEEEECCEEEEecccc
Confidence 488999999999999875
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=213.44 Aligned_cols=277 Identities=20% Similarity=0.190 Sum_probs=180.7
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEe-eecCC-
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG-GLVPE- 78 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 78 (411)
+|||||+|+|+..+. .+.....+.++++||||++++| ++.+.....+.++...+.++. ...++.+.. +..+.
T Consensus 88 ~PG~ID~H~Hl~~~~----~~~~~~~~~al~~GvTtvv~~p-~~~~~v~g~~~~~~~l~~a~~-~~~~v~~~~p~~~P~~ 161 (608)
T 3nqb_A 88 SPGLIDTHMHIESSM----ITPAAYAAAVVARGVTTIVWDP-HEFGNVHGVDGVRWAAKAIEN-LPLRAILLAPSCVPSA 161 (608)
T ss_dssp EECEEEEEECGGGGT----SCHHHHHHHHHTTTEEEEEECC-HHHHHHHTHHHHHHHHHHHTT-CSSEEEEEECCCSSSS
T ss_pred ecCeEecccCccccc----CCHHHHHHHHHhCCeEEEEcCC-ccccccCCHHHHHHHHHHhhh-cCcEEEEeccccCCCC
Confidence 599999999997532 2345567899999999999987 544333345566666555443 345555443 22221
Q ss_pred -------CccchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccC
Q 015182 79 -------NAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 150 (411)
Q Consensus 79 -------~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~ 150 (411)
.....+++.++.+ .++.+++.++++.+ . ...++++.+.++.|+++|+++.+|+.+...
T Consensus 162 ~~~~~~g~~~~~~el~~l~~~~~v~glgE~~~~~~---v-~~~d~~l~~~l~~A~~~g~pV~~Ha~~~~~---------- 227 (608)
T 3nqb_A 162 PGLERGGADFDAAILADLLSWPEIGGIAEIMNMRG---V-IERDPRMSGIVQAGLAAEKLVCGHARGLKN---------- 227 (608)
T ss_dssp TTSCCCSCCCCHHHHHHHHTSTTEEEEEEECCHHH---H-HTTCHHHHHHHHHHHHHTCEEEECCTTCCH----------
T ss_pred CccccCcccCCHHHHHHHHhccCcceeeEeeccCC---c-CCCcHHHHHHHHHHHHcCCEEEEcCCCCCH----------
Confidence 0113457777775 58999998876532 1 235688999999999999999999986421
Q ss_pred cCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccc
Q 015182 151 TLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 230 (411)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~ 230 (411)
..+... .+. |... +|++.. ..+.++.+ ++|..+... ..
T Consensus 228 --------------------~~L~~~----~~a-------Gv~~--~H~~~~--~eea~e~l-~~G~~i~i~-gs----- 265 (608)
T 3nqb_A 228 --------------------ADLNAF----MAA-------GVSS--DHELVS--GEDLMAKL-RAGLTIELR-GS----- 265 (608)
T ss_dssp --------------------HHHHHH----HHT-------TCCE--ECCCCS--HHHHHHHH-HTTCEEEEE-SS-----
T ss_pred --------------------HHHHHH----HHc-------CCCe--eeccCC--HHHHHHHH-HCCCEEEEe-cc-----
Confidence 012111 112 4443 787764 34445554 357654432 10
Q ss_pred cccccCCCCcceEEcCCCCChhhHHHHHHHHh----cCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHH
Q 015182 231 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALM----DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 306 (411)
Q Consensus 231 ~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~----~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~ 306 (411)
...+...+++.+. .|..++++||+.+. . .. + . +..+...+
T Consensus 266 -------------------~~~~~~~l~~~i~~~~~~g~~v~lgTD~~~p-~-~~------~---~------~g~l~~~v 309 (608)
T 3nqb_A 266 -------------------HDHLLPEFVAALNTLGHLPQTVTLCTDDVFP-D-DL------L---Q------GGGLDDVV 309 (608)
T ss_dssp -------------------SGGGHHHHHHHHHHHTSCCTTEEEECBSCCH-H-HH------H---H------TCSHHHHH
T ss_pred -------------------ccccHHHHHHHHHhHhhcCceEEEecCCCCC-c-ch------h---h------hcchHHHH
Confidence 0112334445454 68899999996321 1 00 0 0 01233344
Q ss_pred HHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEE
Q 015182 307 SYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 386 (411)
Q Consensus 307 ~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t 386 (411)
+...+.+++++++++++|.|||++||++++|+|++|+.||||+||.- + + .+|..|
T Consensus 310 ~~~~~~Gls~~eal~~aT~n~A~~lgl~~~G~i~~G~~ADlvv~d~l-------~-~-----------------~~v~~v 364 (608)
T 3nqb_A 310 RRLVRYGLKPEWALRAATLNAAQRLGRSDLGLIAAGRRADIVVFEDL-------N-G-----------------FSARHV 364 (608)
T ss_dssp HHHHHTTCCHHHHHHHHTHHHHHHHTCTTSSCCSTTSBCCEEEESCT-------T-T-----------------CCEEEE
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCCCCcCcCCCCCccEEEECCC-------C-C-----------------CcceEE
Confidence 44556699999999999999999999977899999999999999831 1 1 148999
Q ss_pred EECCEEEEEcCccc
Q 015182 387 ISRGNLVYKEGNHA 400 (411)
Q Consensus 387 i~~G~~v~~~g~~~ 400 (411)
|++|++|+++|+++
T Consensus 365 ~~~G~~v~~~g~~~ 378 (608)
T 3nqb_A 365 LASGRAVAEGGRML 378 (608)
T ss_dssp EETTEEEEETTEEC
T ss_pred EECCEEEEECCeEe
Confidence 99999999999886
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=212.01 Aligned_cols=213 Identities=17% Similarity=0.103 Sum_probs=129.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEecCCcc-cchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 110 PMTNASHIKEGLSVLARYKRPLLVHAEMEK-GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 110 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
..++++.++++++.|+ |+++++|+.+.. .++......| .+| +.. ..+.+
T Consensus 219 ~~~~~~~l~~~~~~a~--g~~v~~H~~e~~~~~~~~~~~~g-------------~~~-------~~~----l~~~g---- 268 (458)
T 4f0l_A 219 RAVTPDELDSVTQLLP--DAPVHIHVAEQVKEVEDCIAWSG-------------KRP-------VEW----LLDHQ---- 268 (458)
T ss_dssp TTSCHHHHHHHTTSST--TSCEEEEESCSHHHHHHHHHHHS-------------SCH-------HHH----HHHHS----
T ss_pred CcCCHHHHHHHHHHhc--CCCEEEEeCCCHHHHHHHHHHhC-------------CCH-------HHH----HHHcC----
Confidence 3578999999999888 999999987543 2222211111 111 111 12221
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccE
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 268 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~ 268 (411)
..+.+..+.|+... .+ +.++.+++.|+ .+.+||..-..- +. -.+| +.++++.|++++
T Consensus 269 ~l~~~~~~~H~~~~-~~-~~~~~l~~~g~--~~~~~p~s~~~l-------~~---~~~~---------~~~~~~~Gv~v~ 325 (458)
T 4f0l_A 269 DVTARWCLIHATHM-SD-EETKHMAKAGA--IAGLCPVTEANL-------GD---GTFN---------ATEFAAAGGKFG 325 (458)
T ss_dssp CCCTTEEEEECCSC-CH-HHHHHHHHHTC--EEEECHHHHHHT-------TC---CCCC---------HHHHHHTTCEEE
T ss_pred CCCCCeEEEEeccC-CH-HHHHHHHHcCC--eEEECccccccc-------cC---CCcc---------HHHHHHCCCeEE
Confidence 12567778888754 22 33444445564 555777532110 11 0122 344577899999
Q ss_pred EcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH---------hcCCCHHHHHHHHhHhHHHHhCCCCCCcc
Q 015182 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR---------KYGVTLEQLASWWSERPAKLAGQVSKGAI 339 (411)
Q Consensus 269 ~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------~~~l~~~~al~~~T~n~A~~lg~~~~G~I 339 (411)
+|||..+.. ++| .+.+....+.... ..+++++++++++|.|||+++|+ ++|+|
T Consensus 326 lgtD~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~~A~~lg~-~~G~l 387 (458)
T 4f0l_A 326 IGSDSNVLI--------GIG---------DELRQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLGGNIAMGR-PEDGL 387 (458)
T ss_dssp ECCBTTSSC--------CHH---------HHHHHHHHHHHHHHTCSSCSCSTTSBHHHHHHHHHHHHHHHHTTC-TTCSS
T ss_pred EECCCCCCC--------CHH---------HHHHHHHHHHhhhccCccccCCcccCCHHHHHHHHHHHHHHHhCC-CCCcC
Confidence 999942111 011 1122222222221 12589999999999999999999 58999
Q ss_pred cccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccC
Q 015182 340 AIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 340 ~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
++||.|||||||.+.++..+.+ ++.+ ..+|.+. . +|..||++|++||++|++++
T Consensus 388 ~~G~~ADlvv~d~~~~~~~~~~-~~~~----~~~~~~~--~-~v~~v~v~G~~v~~~g~~~d 441 (458)
T 4f0l_A 388 KKGASADFVSLDVERLPHAKGD-VVLD----GWIFAGR--A-HVCDVWVRGVKQVEGGRHRL 441 (458)
T ss_dssp STTSBCCEEEEECTTSTTCCHH-HHHH----HHHHTSC--C-EEEEEEETTEEEEETTEETT
T ss_pred CCCCcCCEEEEeCCCCccCCcc-cHHH----hCeEcCC--C-CceEEEECCEEEEECCEeCC
Confidence 9999999999998865443322 2111 2233332 3 79999999999999999863
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=213.04 Aligned_cols=214 Identities=17% Similarity=0.120 Sum_probs=131.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEecCCc-ccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 015182 110 PMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 188 (411)
Q Consensus 110 ~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~ 188 (411)
..+++++++++++.|+ .|+++.+|+.+. ..+.......| .+ .+.. ..+.+
T Consensus 209 ~~~~~e~l~~~~~~A~-~g~~v~~H~~e~~~e~~~~~~~~g-------------~~-------~v~~----l~~~g---- 259 (453)
T 3mdu_A 209 RAVTPQQIATVLAAGH-DDLPVHIHIAEQQKEVDDCQAWSG-------------RR-------PLQW----LYENV---- 259 (453)
T ss_dssp TTSCHHHHHHHHTSSC-TTSCEEEEESCSHHHHHHHHHHHS-------------SC-------HHHH----HHHHS----
T ss_pred CcCCHHHHHHHHHHHh-cCCCEEEEeCCCHHHHHHHHHHhC-------------CC-------HHHH----HHHcC----
Confidence 3578999999999999 999999997553 33322221111 11 1222 22221
Q ss_pred CCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccE
Q 015182 189 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 268 (411)
Q Consensus 189 ~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~ 268 (411)
..+.++.+.|+... +.+.++.+++.|+ .+.+||.....- +. -.+| +.++++.|+.++
T Consensus 260 ~~~~~~~~~H~~~~--~~~~i~~la~~g~--~v~~~P~sn~~l-------g~---g~~p---------~~~~~~~Gv~v~ 316 (453)
T 3mdu_A 260 AVDQRWCLVHATHA--DPAEVAAMARSGA--VAGLCLSTEANL-------GD---GIFP---------ATDFLAQGGRLG 316 (453)
T ss_dssp CCCTTEEEEECCSC--CHHHHHHHHHHTC--EEEECHHHHHHT-------TC---CCCC---------HHHHHHTTCEEE
T ss_pred CCCCCeEEEEcCCC--CHHHHHHHHHcCC--EEEECchhHhhc-------CC---CCCC---------HHHHHHCCCEEE
Confidence 12567888898754 2234555555565 556788532110 11 0122 234577899999
Q ss_pred EcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH----------hcCCCHHHHHHHHhHhHHHHhCCCCCCc
Q 015182 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR----------KYGVTLEQLASWWSERPAKLAGQVSKGA 338 (411)
Q Consensus 269 ~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~~~l~~~~al~~~T~n~A~~lg~~~~G~ 338 (411)
+|||.. ... ++| .+.+......... +++++++++++++|.|||+++|+ ++|+
T Consensus 317 lgtD~~-~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~~-~~G~ 378 (453)
T 3mdu_A 317 IGSDSH-VSL-------SVV---------EELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQ-PIGS 378 (453)
T ss_dssp ECCBTC-SCC-------CHH---------HHHHHHHHHHHHHHTCSCCSCBTTBCCHHHHHHHHHHHHHHHHHTS-SCSS
T ss_pred EECCCC-CCC-------CHH---------HHHHHHHHHHhhhccCCccccCcccCCCHHHHHHHHHHHHHHHhCC-CCCc
Confidence 999953 211 011 0112211111111 13799999999999999999999 7899
Q ss_pred ccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE---EeEEEEEEECCEEEEEcCcccC
Q 015182 339 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL---SGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 339 I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~---~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
|++|+.|||+|+|.+.++..+.. . ++|+....+ .++|..||++|++||++|++++
T Consensus 379 l~~G~~AD~~~~d~~~~~~~~~~-------~-~~~~~~~~~~~~~~~v~~v~v~G~~v~~~g~~~~ 436 (453)
T 3mdu_A 379 LAVGRRADLLVLDGNDPYLASAE-------G-DALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAG 436 (453)
T ss_dssp CCTTSBCCEEEECTTCHHHHTCC-------H-HHHHHHHHHHCCGGGEEEEEETTEEEEBTTBCTT
T ss_pred cCCCCcCCEEEEeCCCccccCCC-------c-cChHHHheeeCCCCCeeEEEECCEEEEECCccCC
Confidence 99999999999998865433110 0 233332211 2469999999999999999863
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-23 Score=198.92 Aligned_cols=187 Identities=20% Similarity=0.189 Sum_probs=118.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
.++.++++++++.|+++|+++.+|+....... .++. +.+.
T Consensus 231 ~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~-----------------------------~~~~----~~~~------- 270 (419)
T 2puz_A 231 AFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLG-----------------------------GAEL----AASY------- 270 (419)
T ss_dssp SBCHHHHHHHHHHHHHTTCCBEEEESSSSCCS-----------------------------HHHH----HHHT-------
T ss_pred CcCHHHHHHHHHHHHHCCCcEEEEecccccCC-----------------------------HHHH----HHhc-------
Confidence 56889999999999999999999987532100 1111 1222
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
+. +.+.|+... .+ +.++.+++.|+ .+.++|.+.+... +. ..+| ++.++++|+++++|
T Consensus 271 g~-~~~~H~~~~-~~-~~~~~~~~~g~--~~~~~p~~~~~l~------~~---~~~~---------~~~~~~~Gv~~~lg 327 (419)
T 2puz_A 271 NA-LSADHLEYL-DE-TGAKALAKAGT--VAVLLPGAFYALR------EK---QLPP---------VQALRDAGAEIALA 327 (419)
T ss_dssp TC-SEEEECTTC-CH-HHHHHHHHHTC--EEEECHHHHHHHT------CC---CCCC---------HHHHHHHTCCEEEC
T ss_pred CC-ceehHhccC-CH-HHHHHHHHcCC--cEEECCchhhhhc------cc---cccc---------HHHHHHCCCeEEEE
Confidence 21 346787754 22 44555555564 4566775432110 00 0122 23346669999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEE
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVV 349 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv 349 (411)
||+.|... +. ..+...+ ...+..+++|++++|+++|.|||+++|+ +++|+|++||+|||||
T Consensus 328 sD~~~~~~--------~~-------~~l~~~~---~~~~~~~~ls~~~al~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvv 389 (419)
T 2puz_A 328 TDCNPGTS--------PL-------TSLLLTM---NMGATLFRMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAI 389 (419)
T ss_dssp CCCCSSSC--------CB-------CCHHHHH---HHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEE
T ss_pred CCCCCCCC--------cc-------ccHHHHH---HHhccccCCCHHHHHHHHHHHHHHHcCCCCCccccCCCCcCCEEE
Confidence 99854321 00 0111111 1123456899999999999999999999 5699999999999999
Q ss_pred EcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEE
Q 015182 350 WEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 350 ~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~ 394 (411)
||.+....+... . ...+|..||++|++|.
T Consensus 390 ld~~~~~~~~~~------~----------~~~~v~~v~v~G~~v~ 418 (419)
T 2puz_A 390 WDIERPAELVYR------I----------GFNPLHARIFKGQKVS 418 (419)
T ss_dssp ECCSSTTHHHHC------B----------SCCCEEEEEETTEECC
T ss_pred ECCCchhcchhh------h----------cCCceEEEEECCEEcC
Confidence 998743211100 0 0236999999999874
|
| >3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=201.60 Aligned_cols=217 Identities=14% Similarity=0.067 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCccc-chhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKG-SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 189 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~ 189 (411)
..+.+.+.++...|.+.|+++.+|+..... ........+ . ..++...+.+ .
T Consensus 236 ~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~~~~~~g-------------~-----------~~~~~~~~~~----~ 287 (479)
T 3hpa_A 236 SVSRDLMRDAAVLAREYGVSLHTHLAENVNDIAYSREKFG-------------M-----------TPAEYAEDLG----W 287 (479)
T ss_dssp TSCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHC-------------------------------CHHHHHHHTT----C
T ss_pred cCCHHHHHHHHHHHHhcCCeEEeecccchHHHHHHHHHcC-------------C-----------chHHHHhhhc----c
Confidence 567899999999999999999999765432 111000000 0 0111111111 1
Q ss_pred CCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEE
Q 015182 190 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDML 269 (411)
Q Consensus 190 ~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~ 269 (411)
.+.+..+.|+... ...+. +..++.+ .....+|........ + .++ . ...++.|+.+++
T Consensus 288 ~~~~~~~~h~~~~-~~~~~-~~~~~~~--~~~~~~p~~~~~~~~-----~-----~~~------~---~~~~~~~~~v~~ 344 (479)
T 3hpa_A 288 VGHDVWHAHCVQL-DDAGI-GLFARTG--TGVAHCPCSNMRLAS-----G-----IAP------V---KKMRLAGVPVGL 344 (479)
T ss_dssp CSTTEEEEECTTC-CHHHH-HHHHHHT--CEEEECHHHHHHTTC-----C-----CCC------H---HHHHHHTCCEEE
T ss_pred ccccceeeeeEec-chhHH-HHHHhcC--Cceeecccccccccc-----C-----ccc------h---hHHHhcCCcEEe
Confidence 2556777787654 23222 2222333 344455543221110 0 111 1 223455999999
Q ss_pred cCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH--HHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccE
Q 015182 270 SSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY--GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 347 (411)
Q Consensus 270 ~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADl 347 (411)
+||..+.... .....+.....++.. ....++|++++++++|.|||++||++++|+|++||+|||
T Consensus 345 gtD~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lgl~~~G~I~~G~~ADl 410 (479)
T 3hpa_A 345 GVDGSASNDG--------------AQMVAEVRQALLLQRVGFGPDAMTAREALEIATLGGAKVLNRDDIGALKPGMAADF 410 (479)
T ss_dssp CCCCTTSSCC--------------CCHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTHHHHHHHTCSSSSSCSTTSBCCE
T ss_pred eccccccCCC--------------ccHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHhCCCCCccCCCCCcCCE
Confidence 9997543210 011112222222222 224579999999999999999999977999999999999
Q ss_pred EEEcCCCeeEeCCCCCcccCCCCCCccCCce--EEeEEEEEEECCEEEEEcCcccC
Q 015182 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRR--LSGKVLATISRGNLVYKEGNHAP 401 (411)
Q Consensus 348 vv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~--~~~~v~~ti~~G~~v~~~g~~~~ 401 (411)
||||++.++...+. ++|+.... ..++|.+|||+||+||+||+++.
T Consensus 411 vv~D~~~~~~~~~~---------~dp~~~lv~~~~~~v~~tiV~G~~V~~dG~~~~ 457 (479)
T 3hpa_A 411 AAFDLRQPLFAGAL---------HDPVAALVFCAPSQTAYTVVNGKVVVREGRLAT 457 (479)
T ss_dssp EEEETTSGGGTTCT---------TSHHHHHHHSSCCCCSEEEETTEEEEETTEECS
T ss_pred EEEcCCCccccCCc---------cCHHHHhhccCCCCceEEEECCEEEEECCcCCC
Confidence 99999976654332 44543211 14579999999999999999975
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-23 Score=200.22 Aligned_cols=287 Identities=12% Similarity=0.055 Sum_probs=149.4
Q ss_pred CCceeecccccCCCC-------C-Ccc-------------CChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHH
Q 015182 1 MPGLIDVHAHLDDPG-------R-TEW-------------EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 59 (411)
Q Consensus 1 lPGlID~H~H~~~~~-------~-~~~-------------~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~ 59 (411)
+|||||+|+|+.... . ... .....+.+.++++||||++|++ +. .+.++.
T Consensus 92 ~PGlID~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~-~~------~~~~~~--- 161 (420)
T 2imr_A 92 APPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIV-WA------PEVMDA--- 161 (420)
T ss_dssp SSCCCEEEEESSCCHHHHHHCHHHHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEE-CS------HHHHHH---
T ss_pred CCCCEecCcCcchhhhhhccCCHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCcEEEEEcc-CC------HHHHHH---
Confidence 699999999997641 0 000 1124466789999999999987 32 234432
Q ss_pred HHhcCCceEEEEEeeecCCCcc----chHHHHHH----HHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcE
Q 015182 60 AAEKRIYVDVGFWGGLVPENAY----NASALEAL----LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 131 (411)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v 131 (411)
.... ..++..+..+......+ .++++.++ .+.+...+|+++.+.. ...++.++++++++.|+++|+++
T Consensus 162 ~~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~a~~~g~~v 237 (420)
T 2imr_A 162 LLAR-EDLSGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERPGLRLGLSPHT---PFTVSHRLMRLLSDYAAGEGLPL 237 (420)
T ss_dssp HHTC-TTCCEEEEEEECBCCGGGHHHHHHHHHHHHHHHHTTCBTTEEEEEEECC---SSSBCHHHHHHHHHHHHHHTCCB
T ss_pred HHHh-cCcEEEEEeeecCCCchhhHHHHHHHHHHHHHHhcccCCceEEEecCCc---CCCcCHHHHHHHHHHHHHCCCcE
Confidence 1221 12222221111111111 12222222 2223345677776542 23568999999999999999999
Q ss_pred EEecCCcc-cchhhhhhccCc----C---Cccccc--cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCC
Q 015182 132 LVHAEMEK-GSERHVKLEDDT----L---DTRSYS--TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 201 (411)
Q Consensus 132 ~~H~~~~~-~~~~~~~~~~~~----~---~~~~~~--~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~ 201 (411)
.+|+.+.. .+...+...|.. . ....+. .+....|.. ..++. +.+.++..+ .....|.+|++
T Consensus 238 ~~H~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~g~l~~-~~~i~H~~~l~- 308 (420)
T 2imr_A 238 QIHVAEHPTELEMFRTGGGPLWDNRMPALYPHTLAEVIGREPGPDL---TPVRY----LDELGVLAA-RPTLVHMVNVT- 308 (420)
T ss_dssp EEEESCSHHHHHHHHHSCSTTGGGSCGGGSCSSHHHHHTSCCCTTC---CHHHH----HHHHTCGGG-CCEEEECCSCC-
T ss_pred EEEeCCCHHHHHHHHHhhccccccccccchhhhhhhhccccccCCC---CHHHH----HHHcCCCCC-CeEEEecCcCC-
Confidence 99997543 333222111100 0 000000 000000000 01111 111111000 12234444443
Q ss_pred hHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhh
Q 015182 202 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 281 (411)
Q Consensus 202 ~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k 281 (411)
. +.++++ ++.|+ .+++||++.... +. ..||+ ++++++|+++++|||+.+...
T Consensus 309 ~-~~i~~l---~~~g~--~~~~~p~~~~~~-------~~---~~~~l---------~~~~~~Gv~~~lgtD~~~~~~--- 360 (420)
T 2imr_A 309 P-DDIARV---ARAGC--AVVTCPRSNHHL-------EC---GTFDW---------PAFAAAGVEVALGTDSVASGE--- 360 (420)
T ss_dssp H-HHHHHH---HHHTC--CEEECHHHHHHT-------TC---CCCCH---------HHHHHTTCCEEECCCCHHHHS---
T ss_pred H-HHHHHH---HHcCC--eEEECHHHHHHh-------cc---CCCCH---------HHHHHCCCeEEEECCCCccCC---
Confidence 2 344444 44464 456788653211 10 12433 346788999999999843210
Q ss_pred hcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCC
Q 015182 282 LLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEA 354 (411)
Q Consensus 282 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~ 354 (411)
.....+ .+..+.+ ...+++++++++++|.|||++||+ +++|+|++||+||| |+|++.
T Consensus 361 ------------~~~~~~-~~~~~~~--~~~~ls~~~al~~aT~n~A~~lgl~~~~GsL~~Gk~ADl-vvd~~~ 418 (420)
T 2imr_A 361 ------------TLNVRE-EVTFARQ--LYPGLDPRVLVRAAVKGGQRVVGGRTPFLRRGETWQEGF-RWELSR 418 (420)
T ss_dssp ------------CSCTHH-HHHHHHH--HCTTSCHHHHHHHHHHHHHHHHC--CCCCSTTSBCCGGG-BGGGCC
T ss_pred ------------CCCHHH-HHHHHHh--cCCCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCccCE-EEECCC
Confidence 000011 1111111 125899999999999999999999 56999999999999 788763
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-22 Score=190.55 Aligned_cols=180 Identities=26% Similarity=0.291 Sum_probs=121.2
Q ss_pred HHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEE
Q 015182 117 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHI 196 (411)
Q Consensus 117 l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (411)
..+.+..+.+.|+++.+|+..... +..+++++++. |.++.+
T Consensus 209 ~~e~l~~~~~~~~~v~iHa~~~~~--------------------------------i~~~~~~~~~~-------g~~~~i 249 (396)
T 3ooq_A 209 KMEVGEMVLRKKIPARMHAHRADD--------------------------------ILTAIRIAEEF-------GFNLVI 249 (396)
T ss_dssp HHHHHHHHHTTSSCEEEEECSHHH--------------------------------HHHHHHHHHHH-------TCCEEE
T ss_pred hHHHHHHHHcCCCcEEEEECchhH--------------------------------HHHHHHHHHHc-------CCCEEE
Confidence 334455556899999999987542 23445555555 778889
Q ss_pred EcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCC
Q 015182 197 VHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 276 (411)
Q Consensus 197 ~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~ 276 (411)
.|+... .. .++.+++.|+.+ .+||.+.+...... +. .....+..+++.|+.++++||+ |.
T Consensus 250 ~H~~~~-~~--~~~~l~~~gv~v--~~~P~~~~~~~~~~-------------~~-~~~~~~~~l~~~Gv~v~lgtD~-~~ 309 (396)
T 3ooq_A 250 EHGTEA-YK--ISKVLAEKKIPV--VVGPLLTFRTKLEL-------------KD-LTMETIAKLLKDGVLIALMCDH-PV 309 (396)
T ss_dssp EECTTG-GG--GHHHHHHHTCCE--EECCCSSCCCSGGG-------------TT-CCTTHHHHHHHTTCCEEECCTT-TT
T ss_pred ecCchH-HH--HHHHHHHCCCCE--EECcccccccchhH-------------Hh-hhhHHHHHHHHCCCEEEEEcCC-Cc
Confidence 999875 32 366666777654 45775433211100 00 0112344567789999999996 33
Q ss_pred ChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCe
Q 015182 277 VPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAE 355 (411)
Q Consensus 277 ~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~ 355 (411)
... . .+........+.+++++++++++|.|||+++|+ +++|+|++||.|||||||.++.
T Consensus 310 ~~~----------------~----~l~~~~~~~~~~gl~~~~al~~~T~n~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~ 369 (396)
T 3ooq_A 310 IPL----------------E----FATVQAATAMRYGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVWSGHPF 369 (396)
T ss_dssp SCG----------------G----GHHHHHHHGGGGTCCHHHHHHTTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTT
T ss_pred cCc----------------c----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCeeeECCCCcCCEEEECCCcc
Confidence 210 0 111223334567999999999999999999999 5689999999999999997621
Q ss_pred eEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcC
Q 015182 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397 (411)
Q Consensus 356 ~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g 397 (411)
.. ..+|..||++|++||++.
T Consensus 370 -------------------~~---~~~v~~v~~~G~~v~~~~ 389 (396)
T 3ooq_A 370 -------------------DM---KSVVERVYIDGVEVFRRE 389 (396)
T ss_dssp -------------------ST---TCCEEEEEETTEEEEECC
T ss_pred -------------------cc---ccceeEEEECCEEEeCCC
Confidence 10 136899999999999875
|
| >4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=208.68 Aligned_cols=298 Identities=20% Similarity=0.265 Sum_probs=165.3
Q ss_pred CCceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCC------CCCCCCHHHHHHHHHHHhcCCceEEEEEee
Q 015182 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNS------DPSTISTETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|||||+|+|+..++ ....++++||||+++.+... .........+..... ......++++++..
T Consensus 400 tPGfID~HvHl~~P~---------~~~eALasGVTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l~-a~~~~~vn~g~~~~ 469 (840)
T 4gy7_A 400 TAGAIDCHVHYICPQ---------LVYEAISSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQ-STDDLPLNFGFTGK 469 (840)
T ss_dssp EECEEEEEEECCCTH---------HHHHHHHHTEEEEEEECSSSCHHHHHSSCCCSHHHHHHHHH-HTTTSSSEEEEEEE
T ss_pred ccCeeeeccCCCCCC---------chHHHHHhhHHHHHhCCCceecCcccccccchHHHHHHHHh-hhhcceeEEEEeCC
Confidence 599999999997652 34567899999999865210 001112222333322 22344567776643
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
... ...+.+.++.+.|+.++|.+..+ ..+++.+..+++.++++|.++.+|++.......
T Consensus 470 ~~~---~~~~~L~el~~aGa~g~K~~~~~-------~~t~~~i~~aL~~A~e~g~~V~ih~e~~~~~~~----------- 528 (840)
T 4gy7_A 470 GSS---SKPDELHEIIKAGAMGLKLHEDW-------GSTPAAIDNCLTIAEHHDIQINIHTDTLNEAGF----------- 528 (840)
T ss_dssp CCC---SSSHHHHHHHHHTCSEEEEETTT-------CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCC-----------
T ss_pred CCc---ccHHHHHHhhhceeeEEEecccc-------CCCHHHHHHHHHHHHHhCCEEEEeccCcchhHH-----------
Confidence 222 22346777778899999998654 357889999999999999999999987543210
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
+...+.... +...|..|..... ...++++...... .+.....+...+...
T Consensus 529 ------------------vee~laA~~---------g~~~h~~~~e~~~~~~A~dii~~~~~a~-~l~~~t~~~~~~~~~ 580 (840)
T 4gy7_A 529 ------------------VEHSIAAFK---------GRTIHTYHSEGAGGGHAPDIIKVCGIKN-VLPSSTNPTRPLTSN 580 (840)
T ss_dssp ------------------HHHHHHHHT---------TCCEEETTTTSTTSCSTTTGGGGGGCTT-EEEEEESTTSSCBTT
T ss_pred ------------------HHHHHHhhc---------CCcccceeccccccccchHHHHHhhccc-ceeeEeeccchhhhh
Confidence 111111111 3334444433210 1112222221111 111111111100000
Q ss_pred ---c---------ccCCC---CcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCch
Q 015182 233 ---E---------EIPDG---DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 297 (411)
Q Consensus 233 ---~---------~~~~~---~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~ 297 (411)
+ ..... +......++++.......+|. ..|.+++++||+.++....+.. ..
T Consensus 581 ~~~e~l~~~~~~~~l~~~i~ed~~~~~s~~~~~~~a~~~ll~--dlGvi~~isSD~~p~~~~~e~~------------~~ 646 (840)
T 4gy7_A 581 TIDEHLDMLMVCHHLDREIPEDLAFAHSRIRKKTIAAEDVLN--DIGAISIISSDSQAMGRVGEVI------------SR 646 (840)
T ss_dssp HHHHHHHHHHHHTTCCTTSHHHHHHHHHHSCHHHHHHHHHHH--HTTSSCEEECCBTTTBCGGGHH------------HH
T ss_pred hhhhhheeEEeeeccCccchhhhhhccCcCCccchhHHHHHH--hCCCeEEEeccccccccccccc------------hh
Confidence 0 00000 000111233333333333333 3499999999998775432210 00
Q ss_pred h-hhHHHHHHHH-------HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCC
Q 015182 298 L-QFVLPVTWSY-------GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 368 (411)
Q Consensus 298 ~-~~~~~~~~~~-------~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~ 368 (411)
. .......... ....+++++++|+++|+|||++||+ +++|+|++||+||||||||. .+
T Consensus 647 ~~~~a~~~~~~~g~~~~e~~~~~~Lsl~eAIr~aTiNPAraLGLddr~GSIEpGK~ADLVLfDPa---------~F---- 713 (840)
T 4gy7_A 647 TWQTADKMKAQTGPLKCDSSDNDNFRIRRYIAKYTINPAIANGFSQYVGSVEVGKLADLVMWKPS---------FF---- 713 (840)
T ss_dssp HHHHHHHHHHHHCSCTTSCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSSCTTSBCCEEEECGG---------GT----
T ss_pred hhcccccchhhcccchhhhhhcCCCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcceEEEECch---------Hc----
Confidence 0 0000000000 1123489999999999999999999 77899999999999999965 11
Q ss_pred CCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 369 PSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 369 ~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
..+|.+|+++|++||.
T Consensus 714 -----------GvKPe~Vik~G~Iv~~ 729 (840)
T 4gy7_A 714 -----------GTKPEMVIKGGMVAWA 729 (840)
T ss_dssp -----------TTCCSEEEETTEEEEE
T ss_pred -----------CCCCeEEEECCEEEEc
Confidence 1257899999999995
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=192.28 Aligned_cols=59 Identities=29% Similarity=0.468 Sum_probs=53.5
Q ss_pred hcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEEC
Q 015182 311 KYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISR 389 (411)
Q Consensus 311 ~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~ 389 (411)
..++|++++++++|.|||++||+ +++|+|++||.|||||+|.+. +|..||++
T Consensus 323 ~~g~~~~~al~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~~---------------------------~v~~v~~~ 375 (382)
T 1yrr_A 323 HCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPDF---------------------------KITKTIVN 375 (382)
T ss_dssp HHCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTS---------------------------CEEEEEET
T ss_pred HhCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCCCCEEEECCCC---------------------------CEEEEEEC
Confidence 56899999999999999999999 568999999999999999651 48899999
Q ss_pred CEEEEEc
Q 015182 390 GNLVYKE 396 (411)
Q Consensus 390 G~~v~~~ 396 (411)
|++||++
T Consensus 376 G~~v~~~ 382 (382)
T 1yrr_A 376 GNEVVTQ 382 (382)
T ss_dssp TEEEEEC
T ss_pred CEEEEeC
Confidence 9999975
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-21 Score=181.42 Aligned_cols=70 Identities=29% Similarity=0.370 Sum_probs=57.5
Q ss_pred HHHHHHHHHHh-cCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceE
Q 015182 301 VLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 379 (411)
Q Consensus 301 ~~~~~~~~~~~-~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~ 379 (411)
.+...++.+.+ .+++++++++++|.|||++||++++|+|++|++|||+|||.+
T Consensus 306 ~l~~~l~~~~~~~~~~~~~~l~~~T~~~A~~lgl~~~G~i~~G~~ADlv~~d~~-------------------------- 359 (376)
T 1o12_A 306 FFSQAVKNFRKFTGCSITELAKVSSYNSCVELGLDDRGRIAEGTRADLVLLDED-------------------------- 359 (376)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTSSCCSTTSBCCEEEECTT--------------------------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCccCCCCCcCCEEEECCC--------------------------
Confidence 44444443343 689999999999999999999954699999999999999954
Q ss_pred EeEEEEEEECCEEEEEcC
Q 015182 380 SGKVLATISRGNLVYKEG 397 (411)
Q Consensus 380 ~~~v~~ti~~G~~v~~~g 397 (411)
++|..||++|++||++|
T Consensus 360 -~~v~~v~~~G~~v~~~~ 376 (376)
T 1o12_A 360 -LNVVMTIKEGEVVFRSR 376 (376)
T ss_dssp -CCEEEEEETTEEEEEC-
T ss_pred -CCEEEEEECCEEEeecC
Confidence 14889999999999875
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=189.18 Aligned_cols=248 Identities=19% Similarity=0.127 Sum_probs=157.8
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHH-hcCCceEEEEEeeecCCCccchHHHHHHHH-------CCce
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA-EKRIYVDVGFWGGLVPENAYNASALEALLN-------AGVL 95 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~ 95 (411)
.+.+.+++.|||++.|+..+ ...++.+.+.. +++..+++..+... +.++.+.+... ..+.
T Consensus 226 ~a~~~~~~~GiTsv~d~~~~-------~~~~~~~~~l~~~g~l~~rv~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 293 (534)
T 3icj_A 226 SAQEHLLSLGVHSVGFMSVG-------EKALKALFELEREGRLKMNVFAYLSP-----ELLDKLEELNLGKFEGRRLRIW 293 (534)
T ss_dssp HHHHHHHHTTEEEEEEEEEC-------HHHHHHHHHHHHTTCCCSEEEEEECG-----GGHHHHHHHTCCSEECSSEEEE
T ss_pred HHHHHHHhCCCEEEEeCCCC-------HHHHHHHHHHHhCCCCcEEEEEecCH-----HHHHHHHHhccccCCCCcEEEE
Confidence 45566789999999998621 23344443333 34566777655321 22333333221 2367
Q ss_pred EEEEeccCC----------------CCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 96 GLKSFMCPS----------------GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 96 ~ik~~~~~~----------------~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
++|+|.+.. +..|.+.+++++|+++++.|+++|+++.+|+.++..+
T Consensus 294 gvK~~~DG~~~~~tA~l~~pY~d~~~~~g~~~~~~e~l~~~v~~A~~~G~~v~~Ha~gd~ai------------------ 355 (534)
T 3icj_A 294 GVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVIERAKPLGLDVAVHAIGDKAV------------------ 355 (534)
T ss_dssp EEEEESCCCTTTTCSCCSSCBTTBTTCCCCCSSCHHHHHHHHHHHTTTTCEEEEEECSHHHH------------------
T ss_pred eEEEEEeCCCCccchhhcCCccCCCCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEcChHHH------------------
Confidence 899987642 1245667899999999999999999999999986543
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC-CC
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP-DG 238 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~-~~ 238 (411)
..+++...+. +.|+.++|++.. +.+.++++++.|+ .+.+||.+.+.+. ... ..
T Consensus 356 --------------~~~l~a~~~~-------~~r~~ieH~~~~--~~e~i~~la~~gv--~~~~~P~~~~~~~-~~~~~l 409 (534)
T 3icj_A 356 --------------DVALDAFEEA-------EFSGRIEHASLV--RDDQLERIKELKV--RISAQPHFIVSDW-WIVNRV 409 (534)
T ss_dssp --------------HHHHHHHHHH-------TCCCEEEECCBC--CHHHHHHHHHHTC--EEEECTTHHHHCT-THHHHH
T ss_pred --------------HHHHHHHHhc-------cCCCEEEECCCC--CHHHHHHHHHcCC--eEEEccccccchh-HHHHhh
Confidence 3334433333 356789999865 3455666666675 6667887755322 100 00
Q ss_pred Cc-ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH---HHHhcCC
Q 015182 239 DT-RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS---YGRKYGV 314 (411)
Q Consensus 239 ~~-~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~l 314 (411)
+. +.... ..+..+++. +.+++|||. |... .+||. .+..... +..++++
T Consensus 410 g~~r~~~~---------~p~~~l~~~-v~valGSD~-p~~~------~~p~~-----------~~~~av~r~~~~~~~~l 461 (534)
T 3icj_A 410 GEERAKWA---------YRLKTLSSI-TKLGFSTDS-PIEP------ADPWV-----------SIDAAVNRYVVDPGERV 461 (534)
T ss_dssp HHHHGGGB---------TCHHHHHHH-SCEEECCTT-TTSC------CCHHH-----------HHHHHHHCCSSCGGGCC
T ss_pred CHHHHhcc---------HHHHHHHHh-CCEEeecCC-CCCC------CCHHH-----------HHHHHHhccccCcccCC
Confidence 10 00001 123456778 999999996 4431 11221 1111111 1246789
Q ss_pred CHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCe
Q 015182 315 TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 355 (411)
Q Consensus 315 ~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~ 355 (411)
|++++|+++|.|+|+++|++++|+|++||.|||||+|.|+.
T Consensus 462 s~~eaL~~~T~~~A~~lg~e~~GsLe~Gk~ADlvvld~dpl 502 (534)
T 3icj_A 462 SREEALHLYTHGSAQVTLAEDLGKLERGFRAEYIILDRDPL 502 (534)
T ss_dssp CHHHHHHHTTHHHHHHTTCTTCSCCSTTSBCCEEEESSCTT
T ss_pred CHHHHHHHHHHHHHHHhCCCCCeEECCCCCcCEEEECCChh
Confidence 99999999999999999997789999999999999998853
|
| >3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=169.53 Aligned_cols=99 Identities=19% Similarity=0.197 Sum_probs=71.1
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-C
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-V 334 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~ 334 (411)
.+...++.|....++||...... +.. ...+..+.+.|+|++|+|+++|.|||++||+ +
T Consensus 302 ~~~~~~~~g~~~~~gt~~~~~~~---------------~~~------~~~~~~~~~~gls~~eal~~~T~npA~~lgl~~ 360 (403)
T 3mtw_A 302 NFRKALKAGVKMVYGTDAGIYPH---------------GDN------AKQFAVMVRYGATPLQAIQSATLTAAEALGRSK 360 (403)
T ss_dssp HHHHHHHHTCEEECCCCBTTBCT---------------TCG------GGHHHHHHHTTCCHHHHHHHTTHHHHHHHTCTT
T ss_pred hhhHHHhcCCeEeeccCCccccc---------------chH------HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 34455667999999999643211 000 0112234578999999999999999999999 6
Q ss_pred CCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEE
Q 015182 335 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 335 ~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~ 394 (411)
++|+|++||+|||||||.|+. + ++. ...+|.+||++||+|.
T Consensus 361 ~~GsI~~G~~ADlvvld~dPl-----~-di~-------------~~~~v~~Vi~~G~vvk 401 (403)
T 3mtw_A 361 DVGQVAVGRYGDMIAVAGDPL-----A-DVT-------------TLEKPVFVMKGGAVVK 401 (403)
T ss_dssp TSSSCCTTSBCCEEEESSCTT-----T-CGG-------------GGGSCSEEEETTEEEE
T ss_pred CceeeCCCCcceEEEECCChh-----H-hHh-------------hhcCcCEEEECCEEEe
Confidence 789999999999999998732 1 111 1125889999999753
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-18 Score=159.97 Aligned_cols=60 Identities=27% Similarity=0.328 Sum_probs=52.5
Q ss_pred HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEE
Q 015182 309 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 387 (411)
Q Consensus 309 ~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti 387 (411)
+...+++++++++++|.|||+++|+ +++|+|++||.||||+||.+. +|..||
T Consensus 321 v~~~g~~~~~al~~aT~~pA~~lg~~~~~G~i~~G~~ADlvvld~~~---------------------------~v~~t~ 373 (381)
T 3iv8_A 321 VEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRDF---------------------------NVKATV 373 (381)
T ss_dssp HHTTCCCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECTTC---------------------------CEEEEE
T ss_pred HHhhCCCHHHHHHHHHHHHHHHhCCCCCCceECCCCcCCEEEECCCC---------------------------CEEEEE
Confidence 3345899999999999999999999 557999999999999999541 478999
Q ss_pred ECCEEEEE
Q 015182 388 SRGNLVYK 395 (411)
Q Consensus 388 ~~G~~v~~ 395 (411)
++|++||+
T Consensus 374 ~~G~~v~~ 381 (381)
T 3iv8_A 374 VNGQYEQN 381 (381)
T ss_dssp ETTEEEEC
T ss_pred ECCEEeeC
Confidence 99999984
|
| >4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-22 Score=199.56 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=72.4
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhHhHHHHhCC-
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQ- 333 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~al~~~T~n~A~~lg~- 333 (411)
..+..+..|.+..+++|+.+.....+.. ...+.+.......+..++. .....+++++++++++|+|||++||+
T Consensus 343 ~~~~l~~~G~~~~i~sD~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~gls~~eal~~aTiNPAralGL~ 417 (566)
T 4ep8_C 343 AEDVLHDLGAFSLTSSDSQAMGRVGEVI-----LRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIA 417 (566)
T ss_dssp HHHHHHHHTSSCEECCCTTSSSCTTCHH-----HHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHGGGTHHHHHHTTCT
T ss_pred HHHHHHhCCCcceEeecccccccccccc-----cccCCCCchHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3344456699999999998775432210 0000000000000000000 01123589999999999999999999
Q ss_pred CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 334 VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 334 ~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
+++|+|++||+|||||||++. + ..++.+|+++|++||-
T Consensus 418 d~iGSIevGK~ADLVL~Dp~~---------f---------------~vkP~~v~~~G~iv~a 455 (566)
T 4ep8_C 418 HEVGSIEVGKLADLVVWSPAF---------F---------------GVKPATVIKGGMIAIA 455 (566)
T ss_dssp TTSSSSCTTSBCCEEEECGGG---------T---------------TTSCSEEEETTEEEEE
T ss_pred CCCcCCCCCCCCCEEEECccc---------c---------------CCCeeEEeeCCEEEEc
Confidence 789999999999999999762 1 1247899999999995
|
| >3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=150.80 Aligned_cols=103 Identities=16% Similarity=0.071 Sum_probs=70.7
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-C
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-V 334 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~ 334 (411)
........|..+.+++|..+.... .... .+ .....++|++|+|+++|.|||++||+ +
T Consensus 310 ~~~~~~~~g~~~~~g~d~~~~~~~------------------~~~~---~~-~~~~~gls~~eal~~~T~~pA~~lgl~~ 367 (426)
T 3mkv_A 310 SIEIMKRAGVKMGFGTDLLGEAQR------------------LQSD---EF-RILAEVLSPAEVIASATIVSAEVLGMQD 367 (426)
T ss_dssp HHHHHHHHTCCBCCCCCCCGGGGG------------------GTTH---HH-HHHHTTSCHHHHHHHTTHHHHHHTTCBT
T ss_pred hhHHhhhcCceeeeccCCcccccc------------------hHHH---HH-HHHHhCCCHHHHHHHHHHHHHHHhCCCC
Confidence 334455669999999996432110 0001 11 12356899999999999999999999 6
Q ss_pred CCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 335 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 335 ~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
++|+|++||+|||||||.|+...+.. +.. + ..+|.+||++||+|..
T Consensus 368 ~~Gsi~~G~~ADlvvlD~dPl~di~~---~~~------~------~~~v~~Vi~~G~vv~~ 413 (426)
T 3mkv_A 368 KLGRIVPGAHADVLVVDGNPLKSVDC---LLG------Q------GEHIPLVMKDGRLFVN 413 (426)
T ss_dssp TBSSCCTTSBCCEEEESSCTTTCSTT---TCS------S------STTCCEEEETTEEEEE
T ss_pred CcceeCCCCcceEEEECCChHHhHHH---HhC------C------CCCccEEEECCEEEEC
Confidence 68999999999999999884322211 110 0 1248899999997653
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-11 Score=110.73 Aligned_cols=255 Identities=16% Similarity=0.166 Sum_probs=137.1
Q ss_pred ceeecccccCCCCC----------CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEE
Q 015182 3 GLIDVHAHLDDPGR----------TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 72 (411)
Q Consensus 3 GlID~H~H~~~~~~----------~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (411)
|+||+|+|+..++. ...+......+.+.+.|||++++++ .. +...+.+.+.+..+. .+ +++...
T Consensus 6 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~iv~~~-~~-~~~~~~~~~~~~~~~-~~---~~v~~~ 79 (291)
T 1bf6_A 6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMT-NR-YMGRNAQFMLDVMRE-TG---INVVAC 79 (291)
T ss_dssp SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECC-CG-GGTCCHHHHHHHHHH-HC---CEEEEE
T ss_pred ceeeeccCeecCCcccccCCCcccCCHHHHHHHHHHHHHcCCCEEEecC-CC-cCCCCHHHHHHHHHh-cC---CeEEEe
Confidence 89999999964321 0112233456677899999999987 32 111234444333221 11 333333
Q ss_pred eee-----cCC-----Cccch-HHHHHHHHCC-------ceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 015182 73 GGL-----VPE-----NAYNA-SALEALLNAG-------VLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 133 (411)
Q Consensus 73 ~~~-----~~~-----~~~~~-~~~~~~~~~g-------~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 133 (411)
.++ -|. +.+++ +.+.+.+..| +..++ +.+++. +......+.+++.++.|+++|++|.+
T Consensus 80 ~G~~~~~~hP~~~~~~~~~~l~~~~~~~l~~gi~~~~~~~~~iGe~gld~~---~~~~~~~~~~~~~~~~a~~~~~pv~i 156 (291)
T 1bf6_A 80 TGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEG---KITPLEEKVFIAAALAHNQTGRPIST 156 (291)
T ss_dssp ECCCCGGGCCTHHHHSCHHHHHHHHHHHHHTCSTTSSCCEEEEEEEECBTT---BCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred eccccCccCcHhhhcCCHHHHHHHHHHHHHhccCCcCcceeeEEEEecCCC---CCCHHHHHHHHHHHHHHHHHCCeEEE
Confidence 343 221 11222 2233333333 22332 223321 11111224688899999999999999
Q ss_pred ecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHh
Q 015182 134 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAK 213 (411)
Q Consensus 134 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~ 213 (411)
|+..... +. ++++++++.+ ....++.+.|++.. .+.+.++.+.
T Consensus 157 H~~~~~~-------------------------------~~-~~~~~l~~~~----~~~~~~~i~H~~~~-~~~~~~~~~~ 199 (291)
T 1bf6_A 157 HTSFSTM-------------------------------GL-EQLALLQAHG----VDLSRVTVGHCDLK-DNLDNILKMI 199 (291)
T ss_dssp ECGGGCS-------------------------------HH-HHHHHHHHTT----CCGGGEEECCCCSS-CCHHHHHHHH
T ss_pred eCCCCCC-------------------------------hH-HHHHHHHHcC----CCchhEEEECCCCC-CCHHHHHHHH
Confidence 9864211 01 2233444331 11357789999653 4567777877
Q ss_pred HCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCc--cEEcCCCCCCChhhhhcccCCcccc
Q 015182 214 TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPELKLLDEGNFLKA 291 (411)
Q Consensus 214 ~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~--~~~~sD~~p~~~~~k~~~~~~~~~~ 291 (411)
++|..+.++.... . . .+| ...+...+++.++.+.+ +.++||. |... +...
T Consensus 200 ~~G~~i~~~~~~~-~----------~-----~~~--~~~~~~~~~~~~~~~~~dril~~TD~-p~~~---------~~~~ 251 (291)
T 1bf6_A 200 DLGAYVQFDTIGK-N----------S-----YYP--DEKRIAMLHALRDRGLLNRVMLSMDI-TRRS---------HLKA 251 (291)
T ss_dssp HTTCEEEECCTTC-T----------T-----TSC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSGG---------GSGG
T ss_pred HCCCEEEEccCcc-c----------C-----CCC--HHHHHHHHHHHHHhCCCCeEEEcCCC-CCCc---------cchh
Confidence 8887666542210 0 0 011 12345678888888754 4789995 5421 1111
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 292 WGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 292 ~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
..| ++....+...+..+...+++.+++.++++.||+++|+
T Consensus 252 ~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~N~~rl~~ 291 (291)
T 1bf6_A 252 NGG-YGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp GTS-CCTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHCC
T ss_pred cCC-CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhHHHHhC
Confidence 112 2222223334444455789999999999999999985
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-10 Score=105.24 Aligned_cols=275 Identities=15% Similarity=0.115 Sum_probs=132.8
Q ss_pred ceeecccccCCCCCCc-----c-----CChHH----HHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceE
Q 015182 3 GLIDVHAHLDDPGRTE-----W-----EGFPS----GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 68 (411)
Q Consensus 3 GlID~H~H~~~~~~~~-----~-----~~~~~----~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (411)
||||+|+|+...+... . ++... ....+.+.|||++++.+. .....+.+.+.++.+......+.-
T Consensus 16 GliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~~--~~~~~~~~~~~~la~~~~~~i~~~ 93 (330)
T 2ob3_A 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVST--FDIGRDVSLLAEVSRAADVHIVAA 93 (330)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCC--GGGTCCHHHHHHHHHHHTCEEECE
T ss_pred CCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCCC--CCcCCCHHHHHHHHHHhCCcEEEE
Confidence 8999999997532221 1 11212 246678999999999872 111134455544332211112222
Q ss_pred EEEEeeecCC-----Cccch-HHHHHHHHC-------CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEec
Q 015182 69 VGFWGGLVPE-----NAYNA-SALEALLNA-------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 135 (411)
Q Consensus 69 ~~~~~~~~~~-----~~~~~-~~~~~~~~~-------g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~ 135 (411)
++++. ..+. +.+.+ +.+.+.+.. .+..+++.+++ .......+.+++.++.|+++|+||.+|+
T Consensus 94 ~G~hp-~~p~~~~~~~~~~l~~~l~~~~~~gi~~~~~k~~aiEiGld~----~~~~~q~~~f~~q~~lA~~~glPv~iH~ 168 (330)
T 2ob3_A 94 TGLWF-DPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTG----KATPFQELVLKAAARASLATGVPVTTHT 168 (330)
T ss_dssp EECCS-CCCHHHHTCCHHHHHHHHHHHHHTCSTTSCCCCSEEEEECSS----SCCHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ecCCc-CCCchhccCCHHHHHHHHHHHHHhhccccccceeEEEEeCCC----CCCHHHHHHHHHHHHHHHHhCCeEEEEC
Confidence 33331 0021 11222 223333311 34555776551 1111112347788999999999999998
Q ss_pred CCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHC
Q 015182 136 EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTN 215 (411)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~ 215 (411)
....- .+. ++++++++.+. ...++.+.|+... .+.+.++++.+.
T Consensus 169 ~~~~r------------------------------~a~-e~l~iL~~~g~----~~~~~~i~H~f~~-~~~e~a~~~~~~ 212 (330)
T 2ob3_A 169 AASQR------------------------------DGE-QQAAIFESEGL----SPSRVCIGHSDDT-DDLSYLTALAAR 212 (330)
T ss_dssp CGGGT------------------------------HHH-HHHHHHHHTTC----CGGGEEECSGGGC-CCHHHHHHHHHT
T ss_pred CCCCC------------------------------CHH-HHHHHHHHcCc----CcccEEEeCCCCC-CCHHHHHHHHhC
Confidence 52100 012 33344444310 0224568898722 356777888788
Q ss_pred CCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChh------hhhcccCC
Q 015182 216 GDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPE------LKLLDEGN 287 (411)
Q Consensus 216 g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~------~k~~~~~~ 287 (411)
|..+..+..-...|... .....-... ..++ .......+.+.++.|. .+.++||. |.... .+..+.
T Consensus 213 G~~i~~~~~G~~tf~~~-~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~p~drilleTD~-p~~l~~~~~~~g~~~~~-- 285 (330)
T 2ob3_A 213 GYLIGLDHIPYSAIGLE-DNASASALL-GIRS--WQTRALLIKALIDQGYMKQILVSNDW-TFGFSSYVTNIMDVMDR-- 285 (330)
T ss_dssp TCEEEECCTTCCCTTCT-TCHHHHHHH-CSSC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSEECSSSTTHHHHHHH--
T ss_pred CCEEEeCCCcccccccc-ccccccccc-cCCC--HHHHHHHHHHHHHhCCCCeEEEeCCC-CCCcccccccCCCcccc--
Confidence 87655432011001000 000000000 0010 1123456778888884 45789994 53100 000000
Q ss_pred ccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 288 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 288 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
..|+ +....+......+.+.|++++++.+++|.||+++|+
T Consensus 286 --n~pn---~~~~~~~~~ia~l~~~G~~~eev~~~~t~N~~rlf~ 325 (330)
T 2ob3_A 286 --VNPD---GMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLS 325 (330)
T ss_dssp --HCTT---GGGHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHS
T ss_pred --cCCC---CcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 0010 111112222233445789999999999999999997
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-09 Score=96.21 Aligned_cols=260 Identities=18% Similarity=0.174 Sum_probs=127.8
Q ss_pred ceeecccccCCCCCCc-----c-----CChH---HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEE
Q 015182 3 GLIDVHAHLDDPGRTE-----W-----EGFP---SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV 69 (411)
Q Consensus 3 GlID~H~H~~~~~~~~-----~-----~~~~---~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
|+||+|+|+....... . ++.. ...+.+.+.|||++++.+. .... .+.+.+.+..+. .+ +++
T Consensus 17 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~~-~~~~-~~~~~~~~~~~~-~~---~~v 90 (314)
T 2vc7_A 17 GFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTV-MGLG-RDIRFMEKVVKA-TG---INL 90 (314)
T ss_dssp CSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECCC-BTTT-CCHHHHHHHHHH-HC---CEE
T ss_pred CCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecCC-CCCC-cCHHHHHHHHHH-cC---CeE
Confidence 9999999996532111 1 1111 2235677899999999872 2111 234444433222 11 222
Q ss_pred EEEeeecCCC-------ccchHHHHHHHH----CCce--E-----EEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcE
Q 015182 70 GFWGGLVPEN-------AYNASALEALLN----AGVL--G-----LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 131 (411)
Q Consensus 70 ~~~~~~~~~~-------~~~~~~~~~~~~----~g~~--~-----ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v 131 (411)
....|+-+.. ...++++.+++. .|+. | +|+.+++. +......+.+++.++.|+++|++|
T Consensus 91 ~~~~G~hp~~~~~~~~~~~~~~~l~~~~~~~~~~gige~G~~~g~i~~~ld~~---~~~~~q~~~~~~~~~lA~~~~~pv 167 (314)
T 2vc7_A 91 VAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEP---GITKDVEKVIRAAAIANKETKVPI 167 (314)
T ss_dssp EECEEBCCSSCCCGGGTTCCHHHHHHHHHHHHHTCSSSSSCCCCSEEEECCTT---CSCHHHHHHHHHHHHHHHHHCCCE
T ss_pred EEEeecCCCCCCchhhhccCHHHHHHHHHHHHHhhcccCCCCCCeEEEeecCC---CCCHHHHHHHHHHHHHHHHHCCEE
Confidence 2222332211 012344544332 2221 2 34444432 111111245777888899999999
Q ss_pred EEecCC--cccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHH
Q 015182 132 LVHAEM--EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLL 209 (411)
Q Consensus 132 ~~H~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i 209 (411)
.+|+.. ... .+++++.++.+ ....++.+.|+... .+.+.+
T Consensus 168 ~iH~~~~~~~~---------------------------------~~~~~~l~~~~----~~~~~~~i~H~~~~-~~~~~~ 209 (314)
T 2vc7_A 168 ITHSNAHNNTG---------------------------------LEQQRILTEEG----VDPGKILIGHLGDT-DNIDYI 209 (314)
T ss_dssp EEECCTTTTHH---------------------------------HHHHHHHHHTT----CCGGGEEETTGGGC-CCHHHH
T ss_pred EEeCCCcccCh---------------------------------HHHHHHHHHcC----CCcccEEEECCCCC-CCHHHH
Confidence 999862 211 12333344331 01336678898643 345667
Q ss_pred HHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCCh-hhhhcccC
Q 015182 210 MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVP-ELKLLDEG 286 (411)
Q Consensus 210 ~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~-~~k~~~~~ 286 (411)
+++.+.|..+..+.+....+ + ........+.+.+..|. .+.++||. |... ... .+
T Consensus 210 ~~~~~~G~~i~~~~~~~~~~----------------~--~~~~~~~~i~~~~~~g~~drilleTD~-~~~~~~~~---~~ 267 (314)
T 2vc7_A 210 KKIADKGSFIGLDRYGLDLF----------------L--PVDKRNETTLRLIKDGYSDKIMISHDY-CCTIDWGT---AK 267 (314)
T ss_dssp HHHHHTTCEEEECCTTCTTT----------------S--CHHHHHHHHHHHHHTTCTTTEEECCCC-BSSBCCGG---GC
T ss_pred HHHHHcCCEEEEeCCCcccC----------------C--CHHHHHHHHHHHHHcCCCCeEEEcCCc-cccccccc---cc
Confidence 77777786554431110000 0 01122345556666644 44899995 3211 000 01
Q ss_pred CccccCCCCc--hhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 287 NFLKAWGGIS--SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 287 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
|+. .+.|.+ +....+......+...+++.+++.+++|.||+++|+
T Consensus 268 p~~-~~~g~~~~~~~~~~~~~~~~l~~~g~~~e~~~~~~~~N~~rlf~ 314 (314)
T 2vc7_A 268 PEY-KPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314 (314)
T ss_dssp TTS-HHHHCTTCSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHTC
T ss_pred hhh-hhcCCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHCHHHHhC
Confidence 110 000111 111122233333445689999999999999999985
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-08 Score=88.97 Aligned_cols=242 Identities=18% Similarity=0.102 Sum_probs=124.0
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC----
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 79 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 79 (411)
+||+|+|+..... ..+.......+.+.||+++++.+ +.+ .+.+.+. +..+....+ ....|+-|..
T Consensus 5 ~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~--~~~--~~~~~~~---~l~~~~~~~--~~~~G~hP~~~~~~ 73 (259)
T 1zzm_A 5 FIDTHCHFDFPPF--SGDEEASLQRAAQAGVGKIIVPA--TEA--ENFARVL---ALAENYQPL--YAALGLHPGMLEKH 73 (259)
T ss_dssp EEESCBCTTSTTT--TTCHHHHHHHHHHTTEEEEEEEC--CSG--GGHHHHH---HHHHHCTTE--EEEECCCGGGGGGC
T ss_pred EEEeeecCCchhh--ccCHHHHHHHHHHcCCCEEEEec--CCH--HHHHHHH---HHHHhCCCe--EEEEEecccccccC
Confidence 8999999976432 23445556778899999998875 222 2333332 222222222 2222333321
Q ss_pred -ccchHHHHHHHH---CCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 80 -AYNASALEALLN---AGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 80 -~~~~~~~~~~~~---~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
.+.++++.++++ .++.++ .+.+++...........+.++..++.|.++|+||.+|+....
T Consensus 74 ~~~~~~~l~~~~~~~~~~~~~iGEiGld~~~~~~~~~~q~~~f~~~~~~a~~~~~Pv~iH~~~a~--------------- 138 (259)
T 1zzm_A 74 SDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--------------- 138 (259)
T ss_dssp CHHHHHHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCH---------------
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccH---------------
Confidence 123455655553 344444 223332110000011235788889999999999999987521
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
..+++++++.+ ...+. +.|+.+. ..+.++.+.+.|+.+ +++....+.
T Consensus 139 -------------------~~~~~il~~~~-----~~~~~-i~H~~~g--~~~~~~~~~~~g~~i--~~~g~~~~~---- 185 (259)
T 1zzm_A 139 -------------------DKLAMHLKRHD-----LPRTG-VVHGFSG--SLQQAERFVQLGYKI--GVGGTITYP---- 185 (259)
T ss_dssp -------------------HHHHHHHHHHC-----CTTCE-EETTCCS--CHHHHHHHHHTTCEE--EECGGGGCT----
T ss_pred -------------------HHHHHHHHhcC-----CCCCE-EEEcCCC--CHHHHHHHHHCCCEE--EECceeecc----
Confidence 12333444431 02234 3498653 445556665667544 344321110
Q ss_pred cCCCCcceEEcCCCCChhhHHHHHHHHhcC--CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-Hh
Q 015182 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RK 311 (411)
Q Consensus 235 ~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G--~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 311 (411)
.. ..+.+.++.. ..+.++||. |+... .++...... + ..+......+ ..
T Consensus 186 ---------------~~---~~~~~~~~~~~~dril~eTD~-P~~~p------~~~~g~~~~-p---~~l~~~~~~la~~ 236 (259)
T 1zzm_A 186 ---------------RA---SKTRDVIAKLPLASLLLETDA-PDMPL------NGFQGQPNR-P---EQAARVFAVLCEL 236 (259)
T ss_dssp ---------------TT---CSHHHHHHHSCGGGEEECCCB-TSSCC------TTCTTSCCC-G---GGHHHHHHHHHHH
T ss_pred ---------------cc---HHHHHHHHhCCHHHEEEecCC-CCccC------CCCCCCCCc-H---HHHHHHHHHHHHH
Confidence 00 0122233332 245899995 54210 011100100 1 1233333333 34
Q ss_pred cCCCHHHHHHHHhHhHHHHhCC
Q 015182 312 YGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.+++.+++.+.+|.|++++|++
T Consensus 237 ~g~~~e~~~~~~~~Na~rl~~l 258 (259)
T 1zzm_A 237 RREPADEIAQALLNNTYTLFNV 258 (259)
T ss_dssp CSSCHHHHHHHHHHHHHHHHCC
T ss_pred HCcCHHHHHHHHHHHHHHHhCc
Confidence 6899999999999999999986
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-07 Score=85.84 Aligned_cols=252 Identities=15% Similarity=0.086 Sum_probs=132.6
Q ss_pred ceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCc--eEEEEEeeecCCC-
Q 015182 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIY--VDVGFWGGLVPEN- 79 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~- 79 (411)
-+||+|+|+..+. ..++.....+.+.+.||..++..+ .+.+..+...+.++.... ..+....|+-|..
T Consensus 2 ~~iD~H~HL~~~~--~~~d~~~vl~~a~~~gV~~~v~~g-------~~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~ 72 (287)
T 3rcm_A 2 QLIDIGVNLTNSS--FHDQQAAIVERALEAGVTQMLLTG-------TSLAVSEQALELCQQLDASGAHLFATAGVHPHDA 72 (287)
T ss_dssp CEEEEEECTTCGG--GTTCHHHHHHHHHHTTEEEEEECC-------CSHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGG
T ss_pred ceEEEeecCCchh--cccCHHHHHHHHHHcCCeEEEEec-------CCHHHHHHHHHHHHhCCCCCceEEEEEEECcCcc
Confidence 3899999997542 234556667788899999998765 234455555444432111 1122233433321
Q ss_pred ----ccchHHHHHHHH-CCceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCC
Q 015182 80 ----AYNASALEALLN-AGVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 153 (411)
Q Consensus 80 ----~~~~~~~~~~~~-~g~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~ 153 (411)
.+.++.+.++++ ..+.+|. +.+++.........-.+.+++.++.|+++|+||.+|+.+..
T Consensus 73 ~~~~~~~~~~l~~l~~~~~vvaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH~r~a~-------------- 138 (287)
T 3rcm_A 73 KAWDTDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDAS-------------- 138 (287)
T ss_dssp GGCCTTHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--------------
T ss_pred ccCCHHHHHHHHHHhcCCCeEEEEEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEEcCCcH--------------
Confidence 233566666664 3455543 23444210000011246788899999999999999998521
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~ 233 (411)
..++++.++.+. ...+. +.|+.+. +.+.++.+.+.|..+. ++....+..
T Consensus 139 --------------------~~~l~il~~~~~----~~~~~-V~H~fsG--~~e~a~~~l~~G~yis--~~g~i~~~k-- 187 (287)
T 3rcm_A 139 --------------------ERLLAILKDYRD----HLTGA-VVHCFTG--EREALFAYLDLDLHIG--ITGWICDER-- 187 (287)
T ss_dssp --------------------HHHHHHHHTTGG----GCSCE-EECSCCC--CHHHHHHHHHTTCEEE--ECGGGGCTT--
T ss_pred --------------------HHHHHHHHHcCC----CCCeE-EEEeCCC--CHHHHHHHHHCCcEEE--ECchhcccc--
Confidence 223444443310 01233 4587653 5566666666776444 332211100
Q ss_pred ccCCCCcceEEcCCCCChhhHHHHHHHHhcC--CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-H
Q 015182 234 EIPDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-R 310 (411)
Q Consensus 234 ~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G--~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~ 310 (411)
+. ..+++.++.- -...+.||. |+... .++.....|-...-..+......+ .
T Consensus 188 ---------------~~----~~l~~~v~~ip~drlLlETD~-P~l~p------~~~~~~~rg~~n~P~~l~~v~~~lA~ 241 (287)
T 3rcm_A 188 ---------------RG----THLHPLVGNIPEGRLMLESDA-PYLLP------RSLRPKPKSGRNEPAFLPEVLREVAL 241 (287)
T ss_dssp ---------------TC----GGGHHHHTTSCTTSEEECCCT-TSCCC------TTCSSCCTTCCCCGGGHHHHHHHHHH
T ss_pred ---------------CH----HHHHHHHHhcCCccEEEeccC-CccCc------cccccccCCCcCCHHHHHHHHHHHHH
Confidence 00 1122334332 235789994 54220 111000011111111233344433 3
Q ss_pred hcCCCHHHHHHHHhHhHHHHhCCC
Q 015182 311 KYGVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 311 ~~~l~~~~al~~~T~n~A~~lg~~ 334 (411)
..|++++++.+.+|.|+.++|+++
T Consensus 242 ~~g~s~eev~~~~~~N~~rlf~l~ 265 (287)
T 3rcm_A 242 HRGESAEHTAAHTTATARDFFQLP 265 (287)
T ss_dssp HHTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HhCcCHHHHHHHHHHHHHHHHCCC
Confidence 568999999999999999999984
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.8e-07 Score=79.75 Aligned_cols=241 Identities=18% Similarity=0.204 Sum_probs=126.4
Q ss_pred eeecccccCCCCCCc-cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc--
Q 015182 4 LIDVHAHLDDPGRTE-WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA-- 80 (411)
Q Consensus 4 lID~H~H~~~~~~~~-~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 80 (411)
+||+|+|+..+.... ..+...-.+.+.+.||+.++... + .....+...+..+.... +....++-|...
T Consensus 3 ~iD~H~Hl~~~~~~~~~~~~~~~l~~~~~~Gv~~~v~~~--~-----~~~~~~~~~~~~~~~p~--~~~~~g~hP~~~~~ 73 (265)
T 1yix_A 3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVA--T-----TLPSYLHMRDLVGERDN--VVFSCGVHPLNQND 73 (265)
T ss_dssp EEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECC--S-----SHHHHHHHHHHHCSCTT--EEEEECCCTTCCSS
T ss_pred EEEEeeCCCchhhcccccCHHHHHHHHHHCCCCEEEEeC--C-----CHHHHHHHHHHHHHCCC--eEEEEEeCCCcccc
Confidence 899999997543211 23455556777889999988754 1 23344444444443222 222234433221
Q ss_pred -cchHHHHHHHHC------CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCC
Q 015182 81 -YNASALEALLNA------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLD 153 (411)
Q Consensus 81 -~~~~~~~~~~~~------g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~ 153 (411)
..++++.++++. |..|++.+..+. + .....+.+...++.|.++|++|.+|+....
T Consensus 74 ~~~~~~l~~~~~~~~~~~iGe~Gl~~~~~~~---~-~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~-------------- 135 (265)
T 1yix_A 74 PYDVEDLRRLAAEEGVVALGETGLDYYYTPE---T-KVRQQESFIHHIQIGRELNKPVIVHTRDAR-------------- 135 (265)
T ss_dssp CCCHHHHHHHHTSTTEEEEEEEEEECTTCSS---C-HHHHHHHHHHHHHHHHHHTCCEEEEEESCH--------------
T ss_pred cchHHHHHHHhccCCeEEEEccccCCCcCCC---C-hHHHHHHHHHHHHHHHHhCCCEEEEecCch--------------
Confidence 125667666542 333444332111 1 122346788999999999999999986421
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccc
Q 015182 154 TRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE 233 (411)
Q Consensus 154 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~ 233 (411)
..++++.++.++ ...++.+ |+... ..+.++.+.+.|+ .++++....+.
T Consensus 136 --------------------~~~~~~l~~~~~----p~~~~v~-H~~~~--~~~~~~~~~~~g~--~~~~sg~~~~~--- 183 (265)
T 1yix_A 136 --------------------ADTLAILREEKV----TDCGGVL-HCFTE--DRETAGKLLDLGF--YISFSGIVTFR--- 183 (265)
T ss_dssp --------------------HHHHHHHHHTTG----GGTCEEE-TTCCS--CHHHHHHHHTTTC--EEEECGGGGST---
T ss_pred --------------------HHHHHHHHhcCC----CCCCEEE-EcCCC--CHHHHHHHHHCCc--EEEECCccccC---
Confidence 112233333210 1345554 88653 3445555545554 55555421110
Q ss_pred ccCCCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh
Q 015182 234 EIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 311 (411)
Q Consensus 234 ~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (411)
. ...+.+.++. | ..+.++||. |+.... ++. |-......+......+.+
T Consensus 184 ----------------~---~~~~~~~~~~~~~drll~~TD~-P~~~~~------~~~----g~~~~~~~l~~~~~~l~~ 233 (265)
T 1yix_A 184 ----------------N---AEQLRDAARYVPLDRLLVETDS-PYLAPV------PHR----GKENQPAMVRDVAEYMAV 233 (265)
T ss_dssp ----------------T---CHHHHHHHHHSCGGGEEECCCB-TSCCCT------TCT----TSCCCGGGHHHHHHHHHH
T ss_pred ----------------c---hHHHHHHHHhCChHHEEEecCC-CCCCCc------ccC----CCCCchHHHHHHHHHHHH
Confidence 0 0123334443 3 245899995 543111 110 100001122223333333
Q ss_pred -cCCCHHHHHHHHhHhHHHHhCC
Q 015182 312 -YGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 312 -~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.+++.+++.++++.|++++|++
T Consensus 234 ~~~~~~~~~~~i~~~Na~rl~~l 256 (265)
T 1yix_A 234 LKGVAVEELAQVTTDNFARLFHI 256 (265)
T ss_dssp HHTSCHHHHHHHHHHHHHHHTTC
T ss_pred HhCcCHHHHHHHHHHHHHHHhCc
Confidence 6899999999999999999998
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-07 Score=86.06 Aligned_cols=278 Identities=14% Similarity=0.102 Sum_probs=147.3
Q ss_pred ceeecccccCCCCC-----------CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEE
Q 015182 3 GLIDVHAHLDDPGR-----------TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 71 (411)
Q Consensus 3 GlID~H~H~~~~~~-----------~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
|+..+|=|+..... ...+......+.+.+.|++|++|+. ... ...+...+++..+...+ ..+++..
T Consensus 21 G~tl~HEHl~~~~~~~~~~~~~~~l~d~~~~~~el~~~~~~G~~tiVd~t-~~~-~GRd~~~l~~is~~t~~-~Gv~Iv~ 97 (363)
T 3ovg_A 21 GITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMD-PPN-VGRDVLKTLEIANAVKN-LGGNVIM 97 (363)
T ss_dssp CEEEEEECSCBCSSHHHHHCGGGCBCCHHHHHHHHHHHHHTTEEEEEECC-CTT-TTCCHHHHHHHHHHHGG-GTCEEEE
T ss_pred CCceeccceeccCChhhccCCcccccCHHHHHHHHHHHHHhCCCeEEEeC-CCc-cCCCHHHHHHHHHhccc-CCcEEEE
Confidence 78899999853211 1122333455566789999999986 222 22566677766544321 1234332
Q ss_pred EeeecC-----CCcc-----chHHHHHHH----HCCc-----------------eEEEEeccCCCCCCCCCCCHHHHHHH
Q 015182 72 WGGLVP-----ENAY-----NASALEALL----NAGV-----------------LGLKSFMCPSGINDFPMTNASHIKEG 120 (411)
Q Consensus 72 ~~~~~~-----~~~~-----~~~~~~~~~----~~g~-----------------~~ik~~~~~~~~~~~~~~~~~~l~~~ 120 (411)
.-|+.. ..+. ..+++.++. ..|+ ..||+-+++.. ......+.+++.
T Consensus 98 ~TG~y~~~~~~~~~~~~~~~~~e~l~~~~~~ei~~Gi~~~~~~gp~~~~t~ikaG~ikig~s~~~---~t~~Q~~~f~aq 174 (363)
T 3ovg_A 98 STGFHKAKFYDKYSSWLAVVPTEEIVKMCVAEIEEGMDEYNYNGPVVKRSKAKAGIIKAGTGYGA---IDRLELKALEVA 174 (363)
T ss_dssp EEECCCGGGSCTTTSHHHHSCHHHHHHHHHHHHHTCCBTTTTSSSCCCBCSCCCCEEEEEEEETB---EEHHHHHHHHHH
T ss_pred eCCCCcCcccccCcHhhhcCCHHHHHHHHHHHHHhcccccccccccccCCCccCCEEEEEeCCCC---CCHHHHHHHHHH
Confidence 222211 0011 122333221 2332 23566555421 111223567788
Q ss_pred HHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCC
Q 015182 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 200 (411)
Q Consensus 121 ~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~ 200 (411)
++.|++.|+||.+|+..... +. +++++.++.+ . ...++.++|+.
T Consensus 175 ~~~A~e~glPViiH~r~gr~-------------------------------a~-d~l~iL~e~g--~--~~~~vvi~H~~ 218 (363)
T 3ovg_A 175 ARTSILTGCPILVHTQLGTM-------------------------------AL-EVAKHLIGFG--A--NPDKIQISHLN 218 (363)
T ss_dssp HHHHHHHCCCEEEEEETTCS-------------------------------HH-HHHHHHHHHT--C--CGGGEEEECGG
T ss_pred HHHHHHhCCEEEEeCCCCCC-------------------------------HH-HHHHHHHhcC--C--CCCcEEEEcCC
Confidence 88899999999999864211 11 2334444431 1 12457788988
Q ss_pred ChHHHHHHHHHHh-HCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCc--cEEcCCCCCCC
Q 015182 201 DASSSLDLLMEAK-TNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTV 277 (411)
Q Consensus 201 ~~~~~~~~i~~~~-~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~--~~~~sD~~p~~ 277 (411)
.. .+.+..+++. +.|..+..+......+ .| .......+.+.+++|.. +.++||. |..
T Consensus 219 ~~-~~~~~a~~~l~~~G~yI~f~g~~~~~~---------------~~---~~~ra~~l~~lv~~~p~drILleTDa-p~~ 278 (363)
T 3ovg_A 219 KN-PDKYYYEKVIKETGVTLCFDGPDRVKY---------------YP---DSLLAENIKYLVDKGLQKHITLSLDA-GRI 278 (363)
T ss_dssp GS-CCHHHHHHHHHHHCCEEEECCTTCTTT---------------CC---HHHHHHHHHHHHHTTCGGGEEECCCC-CSG
T ss_pred CC-CCHHHHHHHHHHCCcEEEECCeecccc---------------CC---hhHHHHHHHHHHHhcCCCeEEEeCCC-CCC
Confidence 43 3444445554 5676554321110000 00 11234567777777754 5889994 532
Q ss_pred hhhhhcccCCccccCCC--CchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEE
Q 015182 278 PELKLLDEGNFLKAWGG--ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 348 (411)
Q Consensus 278 ~~~k~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlv 348 (411)
.... ++. -..| .++..+.+..+...+...|++.+++.++.|.||+++|+++..+++.+|+.-+-|
T Consensus 279 ~~l~-----~~G-~~~g~~~n~p~~l~~~~~~~a~~rGis~eei~~it~~Np~rlf~l~~~~~~~~~~~~~~~ 345 (363)
T 3ovg_A 279 LYQR-----NYG-LTKGKQTFGLAYLFDRFLPLLKQVGVSKEAIFDILVNNPKRVLAFDEKRNFDPLKVSKEV 345 (363)
T ss_dssp GGSH-----HHH-HHTTEECCCTHHHHHTHHHHHHHHTCCHHHHHHHHTHHHHHHTSCCCCCCCCGGGSCHHH
T ss_pred cCCC-----CCC-ccCCCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCcCccCcccCCHHH
Confidence 1100 000 0000 011122222223344567999999999999999999999778999999886654
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.6e-07 Score=80.71 Aligned_cols=247 Identities=13% Similarity=0.040 Sum_probs=125.1
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc---
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 80 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (411)
+||+|+|+..+.. ..+.....+.+.+.||++++..+ + +.+..+...+.++....+. ...++-|...
T Consensus 5 ~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~--~-----~~~~~~~~~~l~~~~~~i~--~~~G~hP~~~~~~ 73 (264)
T 1xwy_A 5 MFDIGVNLTSSQF--AKDRDDVVACAFDAGVNGLLITG--T-----NLRESQQAQKLARQYSSCW--STAGVHPHDSSQW 73 (264)
T ss_dssp CEEEEECTTSGGG--TTTHHHHHHHHHHTTCCEEEECC--C-----SHHHHHHHHHHHHHSTTEE--EEECCCGGGGGGC
T ss_pred EEEEeeCCCChhh--ccCHHHHHHHHHHCCCCEEEEeC--C-----CHHHHHHHHHHHHhCCCEE--EEEEECCcccccC
Confidence 7999999975422 23455556678899999998875 1 2334444444443322222 2223333211
Q ss_pred --cchHHHHHHHHC-CceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 81 --YNASALEALLNA-GVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 81 --~~~~~~~~~~~~-g~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
+.++++.++.+. ++.+++ +.+++...........+.++..++.|.++|+||.+|+.+.
T Consensus 74 ~~~~~~~l~~~~~~~~~~~iGE~Gld~~~~~~~~~~q~~~f~~~l~~a~~~~lpv~iH~~~a------------------ 135 (264)
T 1xwy_A 74 QAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDA------------------ 135 (264)
T ss_dssp CHHHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESC------------------
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeccCCCCCCCcHHHHHHHHHHHHHHHHHhCCcEEEEcCCc------------------
Confidence 234556555542 444442 2233221000000112458889999999999999998642
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
...++++.++.+. ...++.+ |+.+. +.+.++.+.+.|+ .++++....
T Consensus 136 ----------------~~~~~~il~~~~~----~~~~~v~-H~~~g--~~~~~~~~~~~g~--yi~~~g~~~-------- 182 (264)
T 1xwy_A 136 ----------------HERFMTLLEPWLD----KLPGAVL-HCFTG--TREEMQACVAHGI--YIGITGWVC-------- 182 (264)
T ss_dssp ----------------HHHHHHHHGGGGG----GSSCEEE-CSCCC--CHHHHHHHHHTTC--EEEECGGGG--------
T ss_pred ----------------hHHHHHHHHhcCC----CCCcEEE-EccCC--CHHHHHHHHHCCe--EEEECcccc--------
Confidence 1123344444310 0234544 97543 3455555555665 444443211
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChhhhhcccCC-ccccCCCCchhhhHHHHHHHHH-Hhc
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGN-FLKAWGGISSLQFVLPVTWSYG-RKY 312 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~~k~~~~~~-~~~~~~g~~~~~~~~~~~~~~~-~~~ 312 (411)
.++. ...+.+.++... .+.++||. |+....+. .+ +. |-...-..+......+ ...
T Consensus 183 ----------~~~~---~~~l~~~~~~~~~drll~eTD~-P~~~~~~~---~~~~~----g~~n~p~~~~~~~~~~a~~~ 241 (264)
T 1xwy_A 183 ----------DERR---GLELRELLPLIPAEKLLIETDA-PYLLPRDL---TPKPS----SRRNEPAHLPHILQRIAHWR 241 (264)
T ss_dssp ----------CTTT---SHHHHHHGGGSCGGGEEECCCT-TSCCCTTC---TTCCC----SSCCCGGGHHHHHHHHHHHH
T ss_pred ----------CCcC---cHHHHHHHHhCCHHHEEEecCC-CCcCcccc---ccccC----CCCCchHHHHHHHHHHHHHH
Confidence 0000 123344444422 45799995 54210000 00 10 1000001222233332 345
Q ss_pred CCCHHHHHHHHhHhHHHHhCC
Q 015182 313 GVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~ 333 (411)
+++.+++.+.++.|++++|++
T Consensus 242 g~~~e~~~~~~~~Na~rl~~l 262 (264)
T 1xwy_A 242 GEDAAWLAATTDANVKTLFGI 262 (264)
T ss_dssp TCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCHHHHHHHHHHHHHHHhCc
Confidence 899999999999999999987
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.6e-07 Score=80.63 Aligned_cols=238 Identities=15% Similarity=0.175 Sum_probs=122.5
Q ss_pred ceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC-ceEEEEEeeecCCC--
Q 015182 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI-YVDVGFWGGLVPEN-- 79 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 79 (411)
++||+|+|+..+.. ..+.....+.+.+.||+++++.+. .+ .+...+. +.++... .+.. ..|+-|..
T Consensus 5 ~~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~~--~~--~~~~~~~---~l~~~~~~~i~~--~~GihP~~~~ 73 (272)
T 2y1h_A 5 GLVDCHCHLSAPDF--DRDLDDVLEKAKKANVVALVAVAE--HS--GEFEKIM---QLSERYNGFVLP--CLGVHPVQGL 73 (272)
T ss_dssp CEEEEEECTTSGGG--TTTHHHHHHHHHHTTEEEEEECCS--SG--GGHHHHH---HHHHHTTTTEEE--EECCCSBC--
T ss_pred cEEEEeeCCCchhh--hcCHHHHHHHHHHCCCCEEEEeCC--CH--HHHHHHH---HHHHHCCCCEEE--EEEECCCccc
Confidence 58999999975422 234455567788999999998862 11 2232222 2222211 2222 22332321
Q ss_pred ---------ccchHHHHHHHH---CCceEEE-EeccCCCC-CCC---CCCCHHHHHHHHHHHHhCCCcEEEecCCcccch
Q 015182 80 ---------AYNASALEALLN---AGVLGLK-SFMCPSGI-NDF---PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE 142 (411)
Q Consensus 80 ---------~~~~~~~~~~~~---~g~~~ik-~~~~~~~~-~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~ 142 (411)
.+.++++.++++ ..+.+|+ +.+++... ... .....+.++..++.|+++|+||.+|+.+..
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iGE~Gld~~~~~~~~~~~~~~q~~~f~~~~~la~~~~lPv~iH~~~a~--- 150 (272)
T 2y1h_A 74 PPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAG--- 150 (272)
T ss_dssp -----CBCCHHHHHHHHHHHHHHGGGCSEEEEEECCCCTTTCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEECTTCH---
T ss_pred cccccccCCHHHHHHHHHHHHhCCCCEEEEEeccCCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCcH---
Confidence 123445554443 2344442 22332100 000 001234788999999999999999987521
Q ss_pred hhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEE
Q 015182 143 RHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 222 (411)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~ 222 (411)
..+++++++.+ ..++.+ |+.+. +.+.++.+.+.|+. .+
T Consensus 151 -------------------------------~~~~~il~~~~------~~~~v~-H~~~g--~~~~~~~~~~~g~~--i~ 188 (272)
T 2y1h_A 151 -------------------------------RPTINLLQEQG------AEKVLL-HAFDG--RPSVAMEGVRAGYF--FS 188 (272)
T ss_dssp -------------------------------HHHHHHHHHTT------CCSEEE-ETCCS--CHHHHHHHHHTTCE--EE
T ss_pred -------------------------------HHHHHHHHhCC------CCCEEE-EccCC--CHHHHHHHHHCCCE--EE
Confidence 12234444431 235555 87653 44566666666753 33
Q ss_pred cccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCCChhhhhcccCCccccCCCCchhhh
Q 015182 223 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300 (411)
Q Consensus 223 ~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~ 300 (411)
+++...+ .. .+.+.++... ...++||. |... |...-.. .+ .
T Consensus 189 ~~g~~~~--------------------~~----~~~~~~~~~~~drll~eTD~-P~~~--------p~~g~~~-~p---~ 231 (272)
T 2y1h_A 189 IPPSIIR--------------------SG----QKQKLVKQLPLTSICLETDS-PALG--------PEKQVRN-EP---W 231 (272)
T ss_dssp ECGGGGT--------------------CH----HHHHHHHHSCGGGEEECCCT-TSSC--------SSTTSCC-CG---G
T ss_pred ECCcccC--------------------cH----HHHHHHHhCCHHHEEEecCC-CCCC--------CCCCCcC-cH---H
Confidence 4432110 11 2333444322 34899995 5321 0000000 01 1
Q ss_pred HHHHHHHHH-HhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 301 VLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 301 ~~~~~~~~~-~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.+......+ ...|++.+++.+.++.|++++|++
T Consensus 232 ~l~~~~~~la~~~g~~~e~~~~~~~~N~~~l~~~ 265 (272)
T 2y1h_A 232 NISISAEYIAQVKGISVEEVIEVTTQNALKLFPK 265 (272)
T ss_dssp GHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 222222222 335899999999999999999998
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-07 Score=82.77 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=70.9
Q ss_pred ceeecccccCCCCCCc--------cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEee
Q 015182 3 GLIDVHAHLDDPGRTE--------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 3 GlID~H~H~~~~~~~~--------~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
.+||+|+|+..+.... .++.....+.+.+.||++++..+ + +.+..+...+.++....+ ....|
T Consensus 2 ~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~--~-----~~~~~~~~~~la~~~~~v--~~~~G 72 (301)
T 2xio_A 2 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITG--G-----NLQDSKDALHLAQTNGMF--FSTVG 72 (301)
T ss_dssp CEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECC--C-----SHHHHHHHHHHHTTCTTE--EEEEC
T ss_pred eEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeC--C-----CHHHHHHHHHHHHHCCCE--EEEEE
Confidence 5899999997643210 14555666778899999999875 1 244555555555433322 22334
Q ss_pred ecCCCc---------cchHHHHHHHHC---CceEEE-EeccCCCCC-CCCCCCHHHHHHHHHHHHhCCCcEEEecCC
Q 015182 75 LVPENA---------YNASALEALLNA---GVLGLK-SFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLLVHAEM 137 (411)
Q Consensus 75 ~~~~~~---------~~~~~~~~~~~~---g~~~ik-~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~ 137 (411)
+-|... +.++++.++++. .+.+|+ +.+++.... .......+.++..++.|+++|+||.+|+.+
T Consensus 73 iHP~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aIGEiGLd~~~~~~~~~~~Q~~~f~~ql~lA~~~~lPv~iH~r~ 149 (301)
T 2xio_A 73 CHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRN 149 (301)
T ss_dssp CCGGGTHHHHHHCHHHHHHHHHHHHHTCTTTEEEEEEEEEETTCTTTSCHHHHHHHHHHTHHHHHHHCCCEEEEEES
T ss_pred ECcChhhhCcccccHHHHHHHHHHHhcCCCCeEEEEEeeCCCCcCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecC
Confidence 433221 124455555542 344442 223332100 000111257788889999999999999864
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.4e-07 Score=82.94 Aligned_cols=246 Identities=16% Similarity=0.162 Sum_probs=124.1
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhc-CCceEEEEEeeec-CCC-ccchHHHHHHH----HCCc--
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-RIYVDVGFWGGLV-PEN-AYNASALEALL----NAGV-- 94 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~----~~g~-- 94 (411)
...+.+.+.||||+++.. ++.....++..+.++.+. .+ ...+..++|.... |.. ...++++.++. ..|+
T Consensus 79 ~el~~~~~aGv~tiV~~~-g~~g~~r~~~~l~~la~~-~gi~i~~~tG~y~~~~~P~~~~~~~~~L~~~~~~ei~~gi~~ 156 (365)
T 3rhg_A 79 FELNNFKELGGKTIVDAT-GSSSIGRDIRKLKQVAEL-TGINVVASSGLYIEKFEGKRLADDIDAMAKMIDDELNIGIDG 156 (365)
T ss_dssp HHHHHHHHTTEEEEEECC-CSGGGTCCHHHHHHHHHH-HCCEEECEECCCCHHHHGGGGGSCHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHhcCCCeEEEcC-CCCCCCCCHHHHHHHHHH-HCCcEEEEeCccCCCCCchhhcCCHHHHHHHHHHHHHhcccc
Confidence 445667899999999976 222122456666555432 22 1122222221000 110 00234443322 1222
Q ss_pred -----eEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhC-CCcEEEec-CCcccchhhhhhccCcCCccccccccCCCCH
Q 015182 95 -----LGL-KSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHA-EMEKGSERHVKLEDDTLDTRSYSTYLKTRPP 166 (411)
Q Consensus 95 -----~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 166 (411)
..| ++.+++. ......+.+++.++.|.+. |+||.+|+ .....
T Consensus 157 t~vkag~IGEiGld~~----~t~~q~~~f~aq~~~A~~~~glPV~iH~~r~~~a-------------------------- 206 (365)
T 3rhg_A 157 TDIRAGMIGEIGVSPF----FTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRR-------------------------- 206 (365)
T ss_dssp SSCCCCEEEEEECCTT----CCHHHHHHHHHHHHHHTTCTTCEEEEECCTTSCC--------------------------
T ss_pred CCceeEEEEEEEcCCC----CCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCcC--------------------------
Confidence 223 3434321 1111235677888889999 99999998 42111
Q ss_pred HHHHHHHHHHHHHHhhh-ccCCCCCCceEEEEcCC-ChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEE
Q 015182 167 SWEEAAIRELLTVAKDT-RTDGPAEGAHLHIVHLS-DASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC 244 (411)
Q Consensus 167 ~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~i~h~~-~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~ 244 (411)
-.+.+++.++. +. ...++.+.|+. +. .+.+..+++.+.|..+..+..-....+ +. .. .
T Consensus 207 ------~~e~l~iL~e~~~~----~~~~vvi~H~~rs~-~~~e~a~~~l~~G~~I~~~g~g~~~tf-----~~-~~---~ 266 (365)
T 3rhg_A 207 ------GDEVLDILLTEMGC----DPAKISLAHSDPSG-KDIDYQCKMLDRGVWLEFDMIGLDISF-----PK-EG---A 266 (365)
T ss_dssp ------HHHHHHHHTTTTCC----CGGGEEESCCGGGT-TCHHHHHHHHHTTCEEEECCTTCCCBC-----SS-SC---B
T ss_pred ------HHHHHHHHHhccCC----CCCceEEecCCCCC-CCHHHHHHHHhCCCEEEecCCCccccc-----cc-cc---c
Confidence 11233333322 11 12356778998 43 366777777778875544311000000 00 00 0
Q ss_pred cCCCCChhhHHHHHHHHhcCCc--cEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHH
Q 015182 245 APPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASW 322 (411)
Q Consensus 245 ~p~lr~~~~~~~l~~~l~~G~~--~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~ 322 (411)
.| .+......+.+.+++|.. +.++||. |.-.... + ..+ ++....+..+...+...|++.+++.++
T Consensus 267 ~~--~d~~~a~~l~~li~~g~~drilleTD~-p~l~~~~------~---~G~-~~~~~l~~~~~~~~~~~Gis~e~i~~~ 333 (365)
T 3rhg_A 267 AP--SVMDTVEAVATLIERGYGNQIVLSHDV-FLKQMWA------K---NGG-NGWGFVPNVFLSLLAQRGIDKTIIDKL 333 (365)
T ss_dssp CC--CHHHHHHHHHHHHHTTCGGGEEECCCC-CSGGGSG------G---GTS-CTTTHHHHTHHHHHHHTTCCHHHHHHH
T ss_pred cc--chHHHHHHHHHHHHhCCCCcEEEeCCC-CCCCCCC------c---CCC-CCchhHHHHHHHHHHHcCCCHHHHHHH
Confidence 01 012345677788888753 5789994 5422111 1 111 233233333333455779999999999
Q ss_pred HhHhHHHHhCCC
Q 015182 323 WSERPAKLAGQV 334 (411)
Q Consensus 323 ~T~n~A~~lg~~ 334 (411)
.|.||+++|++.
T Consensus 334 ~~~Np~rlf~l~ 345 (365)
T 3rhg_A 334 CIDNPANLLAAE 345 (365)
T ss_dssp TTHHHHHHHHSC
T ss_pred HHHHHHHHHCCC
Confidence 999999999984
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-06 Score=78.57 Aligned_cols=249 Identities=12% Similarity=0.049 Sum_probs=134.8
Q ss_pred CceeecccccCCCCCC----------ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEE
Q 015182 2 PGLIDVHAHLDDPGRT----------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 71 (411)
Q Consensus 2 PGlID~H~H~~~~~~~----------~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
|++||+|+|+..+.+. ...+...-...+-+.||+.++-...+. ...++ +.+.+..+ +...++. +
T Consensus 25 ~~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v~~~~-~~~~n-~~~~~~~~--~~p~r~~-g- 98 (294)
T 4i6k_A 25 MNCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLVQPSF-LGTNN-QAMLNAIQ--QYPDRLK-G- 98 (294)
T ss_dssp CCSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEECCGG-GTTCC-HHHHHHHH--HSTTTEE-E-
T ss_pred CCceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEecCcc-cccch-HHHHHHHH--HCCCeEE-E-
Confidence 4689999999764321 023455556677789999887654111 11122 22222221 1112222 2
Q ss_pred EeeecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCc
Q 015182 72 WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 151 (411)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 151 (411)
..++.+.. ..++++++.+.|+.||++..... +.+.+..+.+...++.|+++|++|.+|+....
T Consensus 99 ~~~v~P~~--~~~eL~~l~~~gv~Gi~l~~~~~---~~~~~~~~~~~~~~~~a~~~glpv~iH~~~~~------------ 161 (294)
T 4i6k_A 99 IAVVQHTT--TFNELVNLKAQGIVGVRLNLFGL---NLPALNTPDWQKFLRNVESLNWQVELHAPPKY------------ 161 (294)
T ss_dssp EECCCTTC--CHHHHHHHHTTTEEEEEEECTTS---CCCCSSSHHHHHHHHHHHHTTCEEEEECCHHH------------
T ss_pred EEEeCCcc--cHHHHHHHHHCCCcEEEeccCCC---CCCCcccHHHHHHHHHHHHcCCEEEEeeCcch------------
Confidence 22333322 23567777778999999754321 11234568899999999999999999987421
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH-------HHHHHHHHHhHCCCCEEEEcc
Q 015182 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS-------SSLDLLMEAKTNGDSITVETC 224 (411)
Q Consensus 152 ~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~-------~~~~~i~~~~~~g~~i~~~~~ 224 (411)
+..+.+++++. ..++.+.|+..+. ...+.+..+.+. -++.+.++
T Consensus 162 ---------------------l~~~~~~l~~~-------p~~~Vi~H~g~p~~~~g~~~~~~~~~~~l~~~-~nv~~k~S 212 (294)
T 4i6k_A 162 ---------------------LVQLLPQLNEY-------SFDVVIDHFGRVDPVKGIEDPDYQKFLSLLNV-KQHWIKVS 212 (294)
T ss_dssp ---------------------HHHHHHHHTTS-------SSCEEESGGGCCCTTTCTTCHHHHHHHHHCCT-TTEEEECC
T ss_pred ---------------------HHHHHHHHHHC-------CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhC-CCEEEEec
Confidence 22344555543 3678888987520 123333333222 24666654
Q ss_pred cccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhc-CC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHH
Q 015182 225 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 302 (411)
Q Consensus 225 p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~ 302 (411)
-...+... + .| .......+.+.++. |. .+.+|||+ |+.... +.+..
T Consensus 213 g~~~~~~~------~-----~~---~~~~~~~l~~~~~~~g~dRll~gSD~-P~~~~~-------------~~~~y---- 260 (294)
T 4i6k_A 213 GFYRLGAT------P-----SN---INIAQQAYNIFKEKGFLHKLIWGSDW-PHTQHE-------------SLITY---- 260 (294)
T ss_dssp CGGGSSST------T-----HH---HHHHHHHHHHHHHHTCGGGEECCCCB-TCTTCT-------------TTCCH----
T ss_pred cccccccc------C-----CC---chhhHHHHHHHHHHhCcccEEEeCCC-CCCCCc-------------CCCCH----
Confidence 32111000 0 00 01122344444443 43 45789995 664310 11111
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCC
Q 015182 303 PVTWSYGRKYGVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 303 ~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~ 334 (411)
...++.+.+..++.++.-+..+.|++++++++
T Consensus 261 ~~~~~~l~~~~~~~~~~~~i~~~NA~rl~~l~ 292 (294)
T 4i6k_A 261 EDAIKAFKQIVFDKHEQCLILNQNPTELFGFS 292 (294)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHTHHHHHHHTC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCHHHHhCCC
Confidence 11233334446899999999999999999983
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-06 Score=80.61 Aligned_cols=246 Identities=16% Similarity=0.175 Sum_probs=125.7
Q ss_pred HHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeec-----CC--CccchHHHHHHH----HC
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLV-----PE--NAYNASALEALL----NA 92 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~----~~ 92 (411)
...+.+.+.||||+++.. .. ....++..+.++.+. .+ +++....|+- |. ....++++.++. ..
T Consensus 90 ~~l~~~~~aGv~tiV~~t-~~-g~gr~~~~l~~la~~-~g---v~i~~~tG~y~~~~~P~~~~~~~~~~L~~~~~~ei~~ 163 (364)
T 3k2g_A 90 AEVKQFAAVGGRSIVDPT-CR-GIGRDPVKLRRISAE-TG---VQVVMGAGYYLASSMPETAARLSADDIADEIVAEALE 163 (364)
T ss_dssp HHHHHHHHTTCCEEEECC-CB-TTTCCHHHHHHHHHH-HC---CEEEECCSBCCGGGCCGGGGTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCeEEEeC-CC-cccCCHHHHHHHHHH-hC---CcEEEEeCccCCCCCchhhccCCHHHHHHHHHHHHHh
Confidence 455667899999999986 21 112456655555432 11 2332222222 21 011234443332 11
Q ss_pred C-------ceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc-ccchhhhhhccCcCCccccccccCC
Q 015182 93 G-------VLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME-KGSERHVKLEDDTLDTRSYSTYLKT 163 (411)
Q Consensus 93 g-------~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (411)
| +..| ++.+++. ......+.+++.++.|++.|+||.+|+.+. ..
T Consensus 164 Gi~~~~vkag~IGEiGld~~----~t~~q~~~f~aq~~~A~~~glPV~iH~~gr~~a----------------------- 216 (364)
T 3k2g_A 164 GTDGTDARIGLIGEIGVSSD----FTAEEEKSLRGAARAQVRTGLPLMVHLPGWFRL----------------------- 216 (364)
T ss_dssp CBTTBSCCCSSEEEEECCTT----CCHHHHHHHHHHHHHHHHHCCCEEEECCTTSCC-----------------------
T ss_pred ccccCCcceeEEEEEEcCCC----CCHHHHHHHHHHHHHHHHHCCeEEEecCCCCcc-----------------------
Confidence 2 1113 3434431 111123467788888999999999998421 11
Q ss_pred CCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH-HHHHHHHHhHCCCCEEEEcccccccccccccCCCCcce
Q 015182 164 RPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 242 (411)
Q Consensus 164 ~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~-~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~ 242 (411)
-.+++++.++.+ . ...++.+.|+... . +.+..+++.+.|..+..+..-...++ +..+
T Consensus 217 ---------~~e~l~iL~e~g--~--~~~~vvi~H~~~s-~~~~e~a~~~l~~G~~I~f~g~gt~~~f-----~~~~--- 274 (364)
T 3k2g_A 217 ---------AHRVLDLVEEEG--A--DLRHTVLCHMNPS-HMDPVYQATLAQRGAFLEFDMIGMDFFY-----ADQG--- 274 (364)
T ss_dssp ---------HHHHHHHHHHTT--C--CGGGEEECCCGGG-TTCHHHHHHHHHHTCEEEECCTTCCCEE-----TTTT---
T ss_pred ---------HHHHHHHHHHcC--C--CCCceEEECCCCC-CCCHHHHHHHHhCCcEEEecCCcccccc-----cccc---
Confidence 112233333331 1 1235667899843 3 67777777777865543311000000 0000
Q ss_pred EEcCCCCChhhHHHHHHHHhcCCc--cEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 243 KCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 243 ~~~p~lr~~~~~~~l~~~l~~G~~--~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
...|. +......+.+.+++|.. +.++||. |...... ...| ++....+..+...+...|++.+++.
T Consensus 275 ~~~~~--d~~ra~~l~~lv~~gp~drilleTD~-p~~~~~~---------~~gg-~~~~~l~~~~~~~l~~~Gis~eei~ 341 (364)
T 3k2g_A 275 VQCPS--DDEVARAILGLADHGYLDRILLSHDV-FVKMMLT---------RYGG-NGYAFVTKHFLPRLRRHGLDDAALE 341 (364)
T ss_dssp EECCC--HHHHHHHHHHHHHTTCGGGEEECCCC-CSGGGSG---------GGTS-CTTSHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccc--HHHHHHHHHHHHHhCCcccEEEeCCC-CCCCCCC---------CCCC-CCcchHHHHHHHHHHHcCCCHHHHH
Confidence 00110 12345677788888753 5789994 4421110 0112 3333333333334456799999999
Q ss_pred HHHhHhHHHHhCCCCCC
Q 015182 321 SWWSERPAKLAGQVSKG 337 (411)
Q Consensus 321 ~~~T~n~A~~lg~~~~G 337 (411)
++.|.||+++|++..-|
T Consensus 342 ~~~~~Np~rlf~l~~~~ 358 (364)
T 3k2g_A 342 TLMVTNPRRVFDASIEG 358 (364)
T ss_dssp HHHTHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHhCCCccc
Confidence 99999999999994334
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-06 Score=77.97 Aligned_cols=265 Identities=15% Similarity=0.127 Sum_probs=134.2
Q ss_pred ceeecccccCCCC-------C-----CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEE
Q 015182 3 GLIDVHAHLDDPG-------R-----TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 70 (411)
Q Consensus 3 GlID~H~H~~~~~-------~-----~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
|+..+|=|+.... . ...+......+...+.|++||+|+. ... ...+...+++..+...-+..+..+
T Consensus 17 G~t~~HEHl~~~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~G~~tiVd~t-~~~-~gR~~~~l~~is~~tgv~iv~~TG 94 (330)
T 3pnz_A 17 GFTYSHEHIVCVPAYWQERDADDLLLDDKEKSQLDVQDFADLGGKTIVDAT-AVD-YGRRVLDVAQISKETGIQIVGTAG 94 (330)
T ss_dssp CSEEEEECCSBCCHHHHTTTCGGGCBCCHHHHHHHHHHHHHTTCCEEEECC-CGG-GCBCHHHHHHHHHHHCCEEEEEEE
T ss_pred CCceeccCceecChhhhhcCCCcccccCHHHHHHHHHHHHHhCCCEEEECC-CCc-cccCHHHHHHHHHHhCCEEEEeCC
Confidence 7888999985321 0 1112233456667789999999986 222 224566666554322111111223
Q ss_pred EEeee-c-----C------CC----cc-----chHHHHHH----HHCC-----ceE--EEEeccCCCCCCCCCCCHHHHH
Q 015182 71 FWGGL-V-----P------EN----AY-----NASALEAL----LNAG-----VLG--LKSFMCPSGINDFPMTNASHIK 118 (411)
Q Consensus 71 ~~~~~-~-----~------~~----~~-----~~~~~~~~----~~~g-----~~~--ik~~~~~~~~~~~~~~~~~~l~ 118 (411)
+|... . + .+ ++ ..+++.++ +..| +.. |++.+++.. ......+.++
T Consensus 95 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ei~~Gi~~t~vkaGvIEiGld~~~---~~~~q~~~f~ 171 (330)
T 3pnz_A 95 FNKSFLWDGKIKPELKPIIGDFETYYEWIENTTTDKLTEFVVNEVENGLEGTPYKAGQVKFGTGYNM---ITPLEEKTIR 171 (330)
T ss_dssp CCCGGGGGSBCCGGGHHHHCSCSBHHHHHHTSCHHHHHHHHHHHHHTCSTTSSCCEEEEEEECBTTB---CCHHHHHHHH
T ss_pred CCccccccccccccccccccccccCchhhccCCHHHHHHHHHHHHHhhCCCcCcCcCeEEEEcCCCC---CCHHHHHHHH
Confidence 33210 0 0 00 00 12233222 1223 222 577776531 1122235677
Q ss_pred HHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEc
Q 015182 119 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH 198 (411)
Q Consensus 119 ~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h 198 (411)
+.++.|++.|+||.+|+..... +.+ .+++.++.+ . ...++.+.|
T Consensus 172 aq~~~A~~~glPViiH~r~g~~-------------------------------a~~-~l~iL~e~~--~--~~~~vvi~H 215 (330)
T 3pnz_A 172 AVARAHHETKAPIHSHTEAGTM-------------------------------ALE-QIEILKQEN--I--PLEYLSIGH 215 (330)
T ss_dssp HHHHHHHHHCCCEEEECGGGCC-------------------------------HHH-HHHHHHHTT--C--CGGGEEETT
T ss_pred HHHHHHHHHCCeEEEeCCCCcC-------------------------------hHH-HHHHHHHcC--C--CCCeEEEec
Confidence 8888899999999999875211 011 133344331 1 123567789
Q ss_pred CCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCC--ccEEcCCCCCC
Q 015182 199 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH--IDMLSSDHSPT 276 (411)
Q Consensus 199 ~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~p~ 276 (411)
+... .+.+..+++.+.|..+..+..... + .++ .......+.+.++.|. .+.++||. |.
T Consensus 216 ~~~s-~~~e~a~~~l~~G~~i~~~g~~t~---------------~-~~~--~~~~~~~l~~lv~~g~~drilleTD~-p~ 275 (330)
T 3pnz_A 216 MDRN-LDPYYHKQVAKTGAFMSFDGIAKI---------------K-YAP--ESARIAAILYLVSEGFEDQILVSGDT-AR 275 (330)
T ss_dssp GGGS-CCHHHHHHHHTTTCEEEECCTTCT---------------T-TCC--HHHHHHHHHHHHHTTCGGGEEECCCC-CS
T ss_pred CCCC-CCHHHHHHHHHcCcEEEEccCccc---------------C-CCC--hHHHHHHHHHHHHcCCCCeEEEeCCC-CC
Confidence 8622 356666666677865443211100 0 000 1223346677777775 35889994 54
Q ss_pred ChhhhhcccCCccccCCCCchh-hhHHHHHHHHHHhcCCCHHH-HHHHHhHhHHHHhCCC
Q 015182 277 VPELKLLDEGNFLKAWGGISSL-QFVLPVTWSYGRKYGVTLEQ-LASWWSERPAKLAGQV 334 (411)
Q Consensus 277 ~~~~k~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~l~~~~-al~~~T~n~A~~lg~~ 334 (411)
....+. + ....+..-+ ...++.+...+...|++.++ +.++.|.||+++|+++
T Consensus 276 ~~~~~~-----~-G~~~~~~~~~~~~~~~l~~~a~~~Gis~ee~i~~~t~~Np~rlf~l~ 329 (330)
T 3pnz_A 276 KTYYKH-----Y-GHGPGLEYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTFK 329 (330)
T ss_dssp GGGSHH-----H-HCCSTTTHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHSSCC
T ss_pred CCCCCc-----c-CCCCCcchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHhcCC
Confidence 221110 0 001121111 11122222223567999998 9999999999999873
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-06 Score=75.71 Aligned_cols=240 Identities=16% Similarity=0.124 Sum_probs=125.3
Q ss_pred ceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC---
Q 015182 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN--- 79 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 79 (411)
-+||.|+|+..+.+ ..+...-...+-+.||+.++..+ . ..+..+...+.++....+ ....++-|..
T Consensus 12 ~~~~~~~hl~~~~~--~~~~~~~l~~~~~~GV~~~v~~~-~------~~~~~~~~~~l~~~~p~i--~~~~G~hP~~~~~ 80 (268)
T 1j6o_A 12 HMVDTHAHLHFHQF--DDDRNAVISSFEENNIEFVVNVG-V------NLEDSKKSLDLSKTSDRI--FCSVGVHPHDAKE 80 (268)
T ss_dssp CEEEEEECTTSGGG--TTTHHHHHHTTTTTTEEEEEEEC-S------SHHHHHHHHHHHTTCTTE--EEEECCCGGGGGG
T ss_pred cccccccCCCChhh--ccCHHHHHHHHHHcCCCEEEEeC-C------CHHHHHHHHHHHHHCCCE--EEEEeeccccccc
Confidence 37999999975422 23455556667789999988765 1 133444444444433322 2223333321
Q ss_pred --ccchHHHHHHHHC------CceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCc
Q 015182 80 --AYNASALEALLNA------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 151 (411)
Q Consensus 80 --~~~~~~~~~~~~~------g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 151 (411)
.+.++++.++++. |-.|++.+..+ .+ .....+.++..++.|.++|+||.+|+....
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~iGe~Gld~~~~~---~~-~~~q~~~f~~~~~~a~~~~lPv~iH~~~~~------------ 144 (268)
T 1j6o_A 81 VPEDFIEHLEKFAKDEKVVAIGETGLDFFRNI---SP-AEVQKRVFVEQIELAGKLNLPLVVHIRDAY------------ 144 (268)
T ss_dssp CCTTHHHHHHHHTTSTTEEEEEEEEEETTTCS---SC-HHHHHHHHHHHHHHHHHHTCCEEEEEESCH------------
T ss_pred cCHHHHHHHHHHhccCCEEEEEccccCCcccC---CC-hHHHHHHHHHHHHHHHHhCCCEEEEeCchH------------
Confidence 1234555555432 22334332211 11 123456788999999999999999986421
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccc
Q 015182 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~ 231 (411)
..+++++++.+ ....++.+ |+.+. ..+.++.+.+.| +.++++....+.
T Consensus 145 ----------------------~~~~~il~~~p----~~~~~~I~-H~~~g--~~~~~~~~~~~g--~y~~~sg~~~~~- 192 (268)
T 1j6o_A 145 ----------------------SEAYEILRTES----LPEKRGVI-HAFSS--DYEWAKKFIDLG--FLLGIGGPVTYP- 192 (268)
T ss_dssp ----------------------HHHHHHHHHSC----CCSSCEEE-TTCCS--CHHHHHHHHHHT--EEEEECGGGGCT-
T ss_pred ----------------------HHHHHHHHhcC----CCCCCEEE-EcCCC--CHHHHHHHHHCC--CeEEeccccccc-
Confidence 12333444431 11456666 97653 344445444444 455544321110
Q ss_pred ccccCCCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH
Q 015182 232 AEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 309 (411)
Q Consensus 232 ~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 309 (411)
.. ..+.+.++. + -.+.++||. |+.... ++...+. .+ ..+......+
T Consensus 193 ------------------~~---~~l~~~i~~~~~driL~eTD~-P~~~~~------~~~g~~n-~p---~~~~~~~~~l 240 (268)
T 1j6o_A 193 ------------------KN---EALREVVKRVGLEYIVLETDC-PFLPPQ------PFRGKRN-EP---KYLKYVVETI 240 (268)
T ss_dssp ------------------TC---HHHHHHHHHHCGGGEEECCCB-TSCCCG------GGTTSCC-CG---GGHHHHHHHH
T ss_pred ------------------ch---HHHHHHHHhCChhhEEEecCC-CCCCCc------ccCCCCC-ch---HHHHHHHHHH
Confidence 00 122333333 3 346889995 553211 0100000 01 1223333333
Q ss_pred Hh-cCCCHHHHHHHHhHhHHHHhCC
Q 015182 310 RK-YGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 310 ~~-~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.+ .+++.++.-+.++.|++++|++
T Consensus 241 a~~~~~~~e~~~~i~~~Na~rlf~l 265 (268)
T 1j6o_A 241 SQVLGVPEAKVDEATTENARRIFLE 265 (268)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCcCHHHHHHHHHHHHHHHhCc
Confidence 23 5899999999999999999987
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.8e-06 Score=77.76 Aligned_cols=263 Identities=17% Similarity=0.121 Sum_probs=134.1
Q ss_pred ceeecccccCC--CCCC--------c----cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceE
Q 015182 3 GLIDVHAHLDD--PGRT--------E----WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 68 (411)
Q Consensus 3 GlID~H~H~~~--~~~~--------~----~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (411)
|+..+|=|+.. ++.. . .+......+.+.+.||+++++.. ... ...+++.+.++.+.. + ++
T Consensus 32 G~t~~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~a~~aGv~tiV~~~-~~~-~~r~~~~l~~la~~~-g---~~ 105 (339)
T 3gtx_A 32 GATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVDAT-PNG-CGRNPAFLREVSEAT-G---LQ 105 (339)
T ss_dssp CEEEEEEEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTEEEEEECC-CTT-TTCCHHHHHHHHHHH-C---CE
T ss_pred CCeeeccCeeccCcccccCCCccccchHHHHHHHHHHHHHHHHhCCCeEEecC-CCc-cCcCHHHHHHHHHHc-C---Cc
Confidence 78889999842 2211 0 01123455667899999999976 211 124566655554321 1 23
Q ss_pred EEEEeeecCCC-------------ccchHHHHHHHH----CC-------ceEEEEeccCCCCCCCCCCCHHHHHHHHHHH
Q 015182 69 VGFWGGLVPEN-------------AYNASALEALLN----AG-------VLGLKSFMCPSGINDFPMTNASHIKEGLSVL 124 (411)
Q Consensus 69 ~~~~~~~~~~~-------------~~~~~~~~~~~~----~g-------~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a 124 (411)
+....|+-+.+ ...++++.++.. .| +..+++.+++.. ......+.+++.++.|
T Consensus 106 i~~~tG~hp~~~~~~~~~~~~~~~~~~~~~L~~~~~~e~~~gIg~tg~k~g~IEigld~~~---~~~~q~~~f~aq~~lA 182 (339)
T 3gtx_A 106 ILCATGFYYEGGGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIKLASSRDA---ITPYEQLFFRAAARVQ 182 (339)
T ss_dssp EECEECCCCTTTSSCHHHHHHHHHSCHHHHHHHHHHHHHHTCSTTSSCCCSEEEEECCSSC---CCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCccCccCCcCCcccccccCCHHHHHHHHHHHHHhcccccCcccceEEEEcCCCC---CCHHHHHHHHHHHHHH
Confidence 32223333311 012244443321 11 234587776531 1112235677788889
Q ss_pred HhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH
Q 015182 125 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 204 (411)
Q Consensus 125 ~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~ 204 (411)
++.|+||.+|+..... +.+ .+++.++.+ . ...++.+.|+... .
T Consensus 183 ~~~glPViiH~~~gr~-------------------------------a~~-~~~iL~~~~--~--~~~~~vi~H~~~~-~ 225 (339)
T 3gtx_A 183 RETGVPIITHTQEGQQ-------------------------------GPQ-QAELLTSLG--A--DPARIMIGHMDGN-T 225 (339)
T ss_dssp HHHCCCEEEECSTTCC-------------------------------HHH-HHHHHHHTT--C--CGGGEEECCGGGC-C
T ss_pred HHHCCeEEEeCCCCcC-------------------------------HHH-HHHHHHHcC--C--CcccEEEEccCCC-C
Confidence 9999999999954211 111 234444431 1 1235667899732 3
Q ss_pred HHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCc--cEEcCCCCCCChhhhh
Q 015182 205 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSDHSPTVPELKL 282 (411)
Q Consensus 205 ~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~--~~~~sD~~p~~~~~k~ 282 (411)
+.+..+++.+.|..+..+..-...+. + .| .+......+.+.++++.. +.++||. |....
T Consensus 226 ~~e~a~~~l~~G~~i~~~g~~t~~~~--------~-----~p--~~~~~~~~l~~li~~~~~drilleTD~-p~~~~--- 286 (339)
T 3gtx_A 226 DPAYHRETLRHGVSIAFDRIGLQGMV--------G-----TP--TDAERLSVLTTLLGEGYADRLLLSHDS-IWHWL--- 286 (339)
T ss_dssp CHHHHHHHHTTTCEEEECCTTCCSST--------T-----CC--CHHHHHHHHHHHHHTTCGGGEEECCCC-EEEES---
T ss_pred CHHHHHHHHHcCcEEEEccCcccccc--------C-----CC--chHHHHHHHHHHHHhcCCCeEEEecCC-Ccccc---
Confidence 56777777677865543211000000 0 01 011344567777877754 4789994 43100
Q ss_pred cccCCc----cc-cCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 283 LDEGNF----LK-AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 283 ~~~~~~----~~-~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
..|. .. ...|.++..+.+..+...+...|++.+++.++.|.||+++|+
T Consensus 287 --~~P~~~p~~~~~~~g~n~p~~l~~~~~~~~~~~Gis~e~i~~~~~~Np~rlf~ 339 (339)
T 3gtx_A 287 --GRPPAIPEAALPAVKDWHPLHISDDILPDLRRRGITEEQVGQMTVGNPARLFG 339 (339)
T ss_dssp --SSCCCCCGGGHHHHHTCSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHC
T ss_pred --CCcccccccccccCCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 0000 00 000011112222233334556799999999999999999986
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-05 Score=70.54 Aligned_cols=242 Identities=14% Similarity=0.144 Sum_probs=120.2
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc---
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA--- 80 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (411)
+||+|+|+..+.. ..+...-.+.+.+.||+.++..+ . . ....+...+..+.... +....++.|...
T Consensus 2 ~iD~H~Hl~~~~~--~~~~~~~l~~~~~~Gv~~~v~~~-~-~-----~~~~~~~~~~~~~~p~--~~~~~g~~P~~~~~~ 70 (265)
T 2gzx_A 2 LIDTHVHLNDEQY--DDDLSEVITRAREAGVDRMFVVG-F-N-----KSTIERAMKLIDEYDF--LYGIIGWHPVDAIDF 70 (265)
T ss_dssp CEEEEECTTSGGG--TTTHHHHHHHHHHTTCCEEEEEE-C-S-----HHHHHHHHHHHHHCTT--EEEEECCCGGGGGGC
T ss_pred eEEEeeCCCCccc--ccCHHHHHHHHHHcCCCEEEEeC-C-C-----HHHHHHHHHHHHhCCC--EEEEEEeccCccccC
Confidence 6999999975422 22345556667789999888765 1 1 2233333333332222 222223333221
Q ss_pred --cchHHHHHHHHC-CceEEEE-eccCC-CCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcc
Q 015182 81 --YNASALEALLNA-GVLGLKS-FMCPS-GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 155 (411)
Q Consensus 81 --~~~~~~~~~~~~-g~~~ik~-~~~~~-~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 155 (411)
+.++++.++++. ++.++.. .+++. ...+. ....+.+...++.|.++|++|.+|+....
T Consensus 71 ~~~~~~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~-~~~~~~~~~~~~~a~~~~~pv~iH~~~~~---------------- 133 (265)
T 2gzx_A 71 TEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPA-DVQKEVFRKQIALAKRLKLPIIIHNREAT---------------- 133 (265)
T ss_dssp CHHHHHHHHHHTTSTTEEEEEEEEEECSCCSSCH-HHHHHHHHHHHHHHHHHTCCEEEEEESCH----------------
T ss_pred CHHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCH-HHHHHHHHHHHHHHHHcCCcEEEEecccH----------------
Confidence 124455554432 2333321 11111 00111 23456789999999999999999986421
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhH-CCCCEEEEcccccccccccc
Q 015182 156 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKT-NGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 156 ~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~-~g~~i~~~~~p~~l~~~~~~ 234 (411)
..+++++++.+ ....++ +.|.... ..+.++.+.+ .| +.++++....+..
T Consensus 134 ------------------~~~~~~l~~~p----~~~~~~-i~H~~~g--~~~~~~~~l~~~~--~y~~~sg~~~~~~--- 183 (265)
T 2gzx_A 134 ------------------QDCIDILLEEH----AEEVGG-IMHSFSG--SPEIADIVTNKLN--FYISLGGPVTFKN--- 183 (265)
T ss_dssp ------------------HHHHHHHHHTT----GGGTCE-EETTCCS--CHHHHHHHHHTSC--CEEEECGGGGCSS---
T ss_pred ------------------HHHHHHHHhcC----CCCCcE-EEEcCCC--CHHHHHHHHHHCC--ceEEecceeecCC---
Confidence 12233444431 003455 4576543 2333333333 45 4555543211100
Q ss_pred cCCCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh-
Q 015182 235 IPDGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK- 311 (411)
Q Consensus 235 ~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 311 (411)
. ..+.+.++. | -.+.++||. |+.... ++. |.......+......+.+
T Consensus 184 ---------------~----~~~~~~i~~~~~dril~gSD~-P~~~~~------~~~----g~~~~~~~~~~~~~~l~~~ 233 (265)
T 2gzx_A 184 ---------------A----KQPKEVAKHVSMERLLVETDA-PYLSPH------PYR----GKRNEPARVTLVAEQIAEL 233 (265)
T ss_dssp ---------------C----CHHHHHHHHSCTTTEEECCCT-TSCCCT------TCT----TSCCCGGGHHHHHHHHHHH
T ss_pred ---------------c----HHHHHHHHhCChhhEEEccCC-CCCCCc------ccC----CCCCChHHHHHHHHHHHHH
Confidence 0 123333443 3 356899995 553211 110 111111122333333333
Q ss_pred cCCCHHHHHHHHhHhHHHHhCC
Q 015182 312 YGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.+++.++.-+.++.|+++++++
T Consensus 234 ~~~~~~~~~~i~~~Na~rl~~~ 255 (265)
T 2gzx_A 234 KGLSYEEVCEQTTKNAEKLFNL 255 (265)
T ss_dssp TTCCHHHHHHHHHHHHHHHHC-
T ss_pred hCCCHHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999998
|
| >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=98.43 E-value=4.7e-06 Score=75.59 Aligned_cols=247 Identities=15% Similarity=0.063 Sum_probs=129.5
Q ss_pred ceeecccccCCCCC----------CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEE
Q 015182 3 GLIDVHAHLDDPGR----------TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 72 (411)
Q Consensus 3 GlID~H~H~~~~~~----------~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (411)
++||+|+|+..+.+ ....+...-.+.+-+.||+..+-.+.... ...+. .+.+..+. .. .++. ..
T Consensus 13 ~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~-~~~n~-~~~~~~~~-~p-~r~~--~~ 86 (288)
T 2ffi_A 13 TAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFL-GTDNR-YLLSALQT-VP-GQLR--GV 86 (288)
T ss_dssp CCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGG-TTCCH-HHHHHHHH-ST-TTBC--CB
T ss_pred CceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEECCccc-cccHH-HHHHHHHH-CC-CCEE--EE
Confidence 68999999975321 00123444455667899997765441101 11222 22222221 11 1121 11
Q ss_pred eeecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcC
Q 015182 73 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL 152 (411)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~ 152 (411)
.++.+... .++++++.+.|+.||++...+.+ + ....++.+..+++.|.++|++|.+|+....
T Consensus 87 ~~v~p~~~--~~el~~~~~~g~~Gi~~~~~~~~--~-~~~~~~~~~~~~~~a~~~~lpv~iH~~~~~------------- 148 (288)
T 2ffi_A 87 VMLERDVE--QATLAEMARLGVRGVRLNLMGQD--M-PDLTGAQWRPLLERIGEQGWHVELHRQVAD------------- 148 (288)
T ss_dssp BCCCSSCC--HHHHHHHHTTTCCEEECCCSSSC--C-CCTTSTTTHHHHHHHHHHTCEEEECSCTTT-------------
T ss_pred EEeCCCCC--HHHHHHHHHCCCeEEEEecccCC--C-CCcccHHHHHHHHHHHHCCCeEEEeechhh-------------
Confidence 22333221 35677777789999998765532 1 234557799999999999999999987531
Q ss_pred CccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHH--------HHHHHHHhHCCCCEEEEcc
Q 015182 153 DTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS--------LDLLMEAKTNGDSITVETC 224 (411)
Q Consensus 153 ~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~--------~~~i~~~~~~g~~i~~~~~ 224 (411)
+..+..++++. . .++.+.|+... .. .+.+....+ .-++.++++
T Consensus 149 --------------------~~~~~~~~~~~------p-l~~vi~H~g~~-~~~~~~~~~~~~~~~~l~~-~~n~y~~~s 199 (288)
T 2ffi_A 149 --------------------IPVLVRALQPY------G-LDIVIDHFGRP-DARRGLGQPGFAELLTLSG-RGKVWVKVS 199 (288)
T ss_dssp --------------------HHHHHHHHTTT------T-CCEEESGGGSC-CTTSCTTCTTHHHHTTCCC-CSCEEEEEE
T ss_pred --------------------HHHHHHHHHHC------C-CCEEEECCCCC-CCCCCCCChhHHHHHHHHh-CCCEEEEeC
Confidence 11234445543 3 67888898754 21 233322211 113454443
Q ss_pred cccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhc-CC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHH
Q 015182 225 PHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 302 (411)
Q Consensus 225 p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~-G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~ 302 (411)
....+.. .. ..+ .......+...++. |. .+.+|||. |+.... ..+..
T Consensus 200 g~~~~~~-------~~----~~~--~~~~~~~~~~~~~~~g~drll~gSD~-P~~~~~-------------~~~~~---- 248 (288)
T 2ffi_A 200 GIYRLQG-------SP----EEN--LAFARQALCALEAHYGAERLMWGSDW-PHTQHE-------------SEVSF---- 248 (288)
T ss_dssp CGGGSSS-------CH----HHH--HHHHHHHHHHHHHHTCGGGEEEECCT-TCTTCT-------------TTCCH----
T ss_pred cchhhcc-------cc----CCC--HHHHHHHHHHHHHHhCCCceEEecCC-CCCCCC-------------CCCCH----
Confidence 2211100 00 000 00111334444544 53 56889995 664210 00111
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 303 PVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 303 ~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
...++.+.+.+++.++.-+....|+++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~i~~~NA~rl~~l 279 (288)
T 2ffi_A 249 GSAVEQFEALGCSAQLRQALLLDTARALFGF 279 (288)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCHHHHhCc
Confidence 2223333444679999999999999999998
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.41 E-value=9.3e-06 Score=71.81 Aligned_cols=237 Identities=18% Similarity=0.126 Sum_probs=123.2
Q ss_pred ceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC----
Q 015182 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---- 78 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 78 (411)
-+||+|+|+... ++.......|.+.||..+.- + ++ ++..+...+.++....+ ....|+-|.
T Consensus 2 ~liDtH~HL~~~-----~d~~~vl~~a~~~gV~~i~v-~--~~-----~~~~~~~~~la~~~~~v--~~~~GiHP~~~~~ 66 (254)
T 3gg7_A 2 SLIDFHVHLDLY-----PDPVAVARACEERQLTVLSV-T--TT-----PAAWRGTLALAAGRPHV--WTALGFHPEVVSE 66 (254)
T ss_dssp CCEEEEECGGGS-----SSHHHHHHHHHHTTCEEEEC-C--SS-----GGGHHHHHGGGTTCTTE--EECBCCCGGGTTT
T ss_pred ceEEEeeCCCCC-----CCHHHHHHHHHHCCCcEEEe-c--CC-----HHHHHHHHHHHHhCCCe--EEEEeeCcccccc
Confidence 389999999742 24555567788899988763 3 22 23344444444332222 233343332
Q ss_pred CccchHHHHHHHHCCceEEE-EeccCCCCC-CCCCCCHHHHHHHHHHHHhCCCcEE-EecCCcccchhhhhhccCcCCcc
Q 015182 79 NAYNASALEALLNAGVLGLK-SFMCPSGIN-DFPMTNASHIKEGLSVLARYKRPLL-VHAEMEKGSERHVKLEDDTLDTR 155 (411)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~ik-~~~~~~~~~-~~~~~~~~~l~~~~~~a~~~g~~v~-~H~~~~~~~~~~~~~~~~~~~~~ 155 (411)
..+.++.+.+++. .+.+|. +.+++.... .....-.+.+++.++.|+++++||. +|+.+..
T Consensus 67 ~~~~l~~l~~~~~-~~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~lPviSiH~r~a~---------------- 129 (254)
T 3gg7_A 67 RAADLPWFDRYLP-ETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAE---------------- 129 (254)
T ss_dssp TGGGTHHHHHHGG-GCSEEEEEECCCCGGGGGGHHHHHHHHHHHHHHHHHTTCEEEEEECTTCH----------------
T ss_pred cHHHHHHHHHHhh-hccEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcH----------------
Confidence 1234556666553 233331 233332100 0001123467788899999999998 9998631
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccccccccccc
Q 015182 156 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 235 (411)
Q Consensus 156 ~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~ 235 (411)
..++++.++.+ ...+. +.|+.+. +.+.++.+.+.|..+. +++..+
T Consensus 130 ------------------~~~~~il~~~~-----~~~~~-v~H~fsG--~~e~a~~~l~~G~yis--~~g~~~------- 174 (254)
T 3gg7_A 130 ------------------SEVLNCLEANP-----RSGTP-ILHWYSG--SVTELRRAISLGCWFS--VGPTMV------- 174 (254)
T ss_dssp ------------------HHHHHHHHHCG-----GGEEE-EEETCCS--CHHHHHHHHHTTCEEE--ECHHHH-------
T ss_pred ------------------HHHHHHHHHcC-----CCCcE-EEEeCCC--CHHHHHHHHcCCcEEE--ECcccC-------
Confidence 12334444331 02233 5587763 5666677766776443 333211
Q ss_pred CCCCcceEEcCCCCChhhHHHHHHHHhcC--CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-Hhc
Q 015182 236 PDGDTRFKCAPPIRDAANKEKLWEALMDG--HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKY 312 (411)
Q Consensus 236 ~~~~~~~~~~p~lr~~~~~~~l~~~l~~G--~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~ 312 (411)
+. ..+++.++.- -...+.||. |+... . |-...-..+......+ .-.
T Consensus 175 -------------~~----~~~~~~v~~ip~drlLlETD~-P~~~~-r------------g~~n~P~~v~~v~~~iA~~~ 223 (254)
T 3gg7_A 175 -------------RT----QKGAALIRSMPRDRVLTETDG-PFLEL-D------------GQAALPWDVKSVVEGLSKIW 223 (254)
T ss_dssp -------------TS----HHHHHHHHHSCGGGEEECCCT-TTSEE-T------------TEECCGGGHHHHHHHHHHHH
T ss_pred -------------ch----HHHHHHHHHcCCCeEEEeCCC-Ccccc-C------------CCCCCHHHHHHHHHHHHHHh
Confidence 11 2233444432 135789994 65321 0 1000001233333333 345
Q ss_pred CCCHHHHHHHHhHhHHHHhCCCCCC
Q 015182 313 GVTLEQLASWWSERPAKLAGQVSKG 337 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~~~~G 337 (411)
+++.+++.+..+.|+.++|++.+-|
T Consensus 224 g~~~ee~~~~~~~N~~~lf~~~~~~ 248 (254)
T 3gg7_A 224 QIPASEVERIVKENVSRLLGTVREG 248 (254)
T ss_dssp TSCHHHHHHHHHHHHHHHHHC----
T ss_pred CcCHHHHHHHHHHHHHHHHCCCccc
Confidence 8999999999999999999985444
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.8e-05 Score=67.71 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=94.6
Q ss_pred hHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC-CCcEEEecCCcccchhhhhhccCcCCccccccc
Q 015182 83 ASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY-KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY 160 (411)
Q Consensus 83 ~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~-g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (411)
++++.+++ +.|+.+|+.+-- . . . ..+.++.+++.|.++ |++|.+|+..+...
T Consensus 104 ~~el~~~~~~~g~~gi~~~g~-~---~--~-~~~~~~~~~~~a~~~~~lpv~iH~~~~~~~------------------- 157 (272)
T 3cjp_A 104 NSYIEENIVNNKLVGIGELTP-A---S--G-QIKSLKPIFKYSMDSGSLPIWIHAFNPLVL------------------- 157 (272)
T ss_dssp HHHHHHHTTTTTCSEEEEECC-C---T--T-CGGGGHHHHHHHHHTTCCCEEECCSTTCCH-------------------
T ss_pred HHHHHHHHHhcCceEEEecCC-C---C--C-ccHHHHHHHHHHHhccCCcEEEeCCCCCcc-------------------
Confidence 45566644 468999986421 1 1 1 457799999999999 99999998753110
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCc
Q 015182 161 LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT 240 (411)
Q Consensus 161 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~ 240 (411)
.+...+..++++. ++.++.++|.... ...+.++.+++. .++.++++...
T Consensus 158 ----------~~~~~~~~~l~~~------p~l~iv~~H~G~~-~~~~~~~~~~~~-~~~y~~~s~~~------------- 206 (272)
T 3cjp_A 158 ----------QDIKEIAELCKAF------PKVPVILGHMGGS-NWMTAVELAKEI-QNLYLDTSAYF------------- 206 (272)
T ss_dssp ----------HHHHHHHHHHHHS------TTSCEEEGGGGGG-GHHHHHHHHHHC-TTEEEECTTCS-------------
T ss_pred ----------ccHHHHHHHHHHC------CCceEEEECCCCc-cHHHHHHHHHhC-CCEEEEecccc-------------
Confidence 0123344455543 2667888888765 343455444432 24555544311
Q ss_pred ceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHH
Q 015182 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320 (411)
Q Consensus 241 ~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al 320 (411)
.......+.+.+ +-.+.++||. |+... . .....+...+++.++.-
T Consensus 207 ---------~~~~~~~~~~~~--~dril~gSD~-P~~~~-------------------~----~~~~~~~~~~l~~~~~~ 251 (272)
T 3cjp_A 207 ---------STFVLKIVINEL--PLKCIFGTDM-PFGDL-------------------Q----LSIEAIKKMSNDSYVAN 251 (272)
T ss_dssp ---------CHHHHHHHHHHS--TTTEECCCCT-TSSCH-------------------H----HHHHHHHHHCSSHHHHH
T ss_pred ---------cHHHHHHHHHhC--CCeEEEeCCC-CCCCh-------------------H----HHHHHHHhcCCCHHHHH
Confidence 011122233333 4567899995 55310 0 01122234589999999
Q ss_pred HHHhHhHHHHhCC
Q 015182 321 SWWSERPAKLAGQ 333 (411)
Q Consensus 321 ~~~T~n~A~~lg~ 333 (411)
+....|+++++++
T Consensus 252 ~i~~~Na~rl~~l 264 (272)
T 3cjp_A 252 AVLGDNISRLLNI 264 (272)
T ss_dssp HHHTHHHHHHHTC
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999998
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.1e-05 Score=68.91 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=73.2
Q ss_pred ceeecccccCCCCC--------CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCC---ceEEEE
Q 015182 3 GLIDVHAHLDDPGR--------TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI---YVDVGF 71 (411)
Q Consensus 3 GlID~H~H~~~~~~--------~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 71 (411)
-|||+|+|+..+.+ ...++.......|.+.||..++..+ .+.+..+...+.++... .+++..
T Consensus 27 ~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g-------~~~~~~~~~~~La~~~~~~~~~~v~~ 99 (325)
T 3ipw_A 27 QFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITS-------GCLNDFKKAIEIINKYQNLTNIKLVT 99 (325)
T ss_dssp CEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECC-------CSHHHHHHHHHHHHHHGGGCSSEEEE
T ss_pred CeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEcc-------CCHHHHHHHHHHHHHCCCcccceEEE
Confidence 48999999976533 0145666777888999999998766 23445555544443211 112333
Q ss_pred EeeecCCC-----cc-chHHHHHHHHC---CceEE-EEeccCCCCC-CCCCCCHHHHHHHHHHHHh-CCCcEEEecCC
Q 015182 72 WGGLVPEN-----AY-NASALEALLNA---GVLGL-KSFMCPSGIN-DFPMTNASHIKEGLSVLAR-YKRPLLVHAEM 137 (411)
Q Consensus 72 ~~~~~~~~-----~~-~~~~~~~~~~~---g~~~i-k~~~~~~~~~-~~~~~~~~~l~~~~~~a~~-~g~~v~~H~~~ 137 (411)
..|+-|.. .+ .++++.++++. .+.+| -+.+++...+ .....-.+.+++.++.|++ +++||.+|+.+
T Consensus 100 ~~GiHP~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~ 177 (325)
T 3ipw_A 100 TIGVHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRK 177 (325)
T ss_dssp EECCCGGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEEEEETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEEEES
T ss_pred EEEECcchhhcCCchHHHHHHHHHHhcCCCCEEEEEeeecCCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEEeCc
Confidence 33443321 11 45666666642 44444 2234432100 0000112467778888999 99999999976
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=8.2e-05 Score=69.11 Aligned_cols=261 Identities=17% Similarity=0.147 Sum_probs=131.1
Q ss_pred ceeecccccCC--CCCC-------cc--CC---hHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceE
Q 015182 3 GLIDVHAHLDD--PGRT-------EW--EG---FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 68 (411)
Q Consensus 3 GlID~H~H~~~--~~~~-------~~--~~---~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (411)
|++++|=|+.. ++.. .. +. .....+..-+.|+.||+|+. +..- ..++..+++..+.. .++
T Consensus 52 G~tl~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~Gg~tIVd~T-~~g~-GRd~~~l~~is~~t----Gv~ 125 (360)
T 3tn4_A 52 GKTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPT-PNDC-GRNPAFLRRVAEET----GLN 125 (360)
T ss_dssp CSEESSCEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTCCEEEECC-CTTT-TCCHHHHHHHHHHH----CCE
T ss_pred CCceeccCeeecChhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeEEECC-CCCc-CcCHHHHHHHHHHc----CCC
Confidence 88999999742 2210 00 11 12234456689999999986 3222 25666666554322 234
Q ss_pred EEEEeeecCC---Cc----------cchHHHHHH----HHCCc-------eEEEEeccCCCCCCCCCCCHHHHHHHHHHH
Q 015182 69 VGFWGGLVPE---NA----------YNASALEAL----LNAGV-------LGLKSFMCPSGINDFPMTNASHIKEGLSVL 124 (411)
Q Consensus 69 ~~~~~~~~~~---~~----------~~~~~~~~~----~~~g~-------~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a 124 (411)
+...-|+... .+ ...+++.++ +..|+ .-||...++. .+.-.....+++.++.+
T Consensus 126 IV~~TG~y~~~~~~p~~~~~~~~~~~~~e~l~~~~i~Ei~~Gi~~tgikaG~I~~~~~~~---~~t~~E~k~frA~a~aa 202 (360)
T 3tn4_A 126 IICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTGIKAGVIKLASSKG---RITEYEKMFFRAAARAQ 202 (360)
T ss_dssp EEEEECCCCGGGSCTHHHHHHHHHTCHHHHHHHHHHHHHHTCSTTSCCCCSEEEEECBTT---BCCHHHHHHHHHHHHHH
T ss_pred EEEeCccccCcccCCcccchhhhcccCHHHHHHHHHHHHHhccccCCCcceEEEEEccCC---CCCHHHHHHHHHHHHHH
Confidence 3221121110 00 011233322 12332 2355543322 12222335688889999
Q ss_pred HhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH
Q 015182 125 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 204 (411)
Q Consensus 125 ~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~ 204 (411)
++.|+||.+|+...... . +.+++..+.+ ....++.+.|+... .
T Consensus 203 ~etG~Pv~iHt~~~~~~-------------------------------~-e~l~iL~eeG----~~~~~vvi~H~~~~-~ 245 (360)
T 3tn4_A 203 KETGAVIITHTQEGTMG-------------------------------P-EQAAYLLEHG----ADPKKIVIGHMCDN-T 245 (360)
T ss_dssp HHHCCEEEEECSTTCCH-------------------------------H-HHHHHHHHTT----CCGGGEEECCGGGC-C
T ss_pred HHhCCcEEEEcCcccCC-------------------------------H-HHHHHHHHcC----CCCCceEEEcCCCC-C
Confidence 99999999998763210 1 1122222321 11346778895322 3
Q ss_pred HHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEE-cCCCCChhhHHHHHHHHhcCC--ccEEcCCCC------C
Q 015182 205 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC-APPIRDAANKEKLWEALMDGH--IDMLSSDHS------P 275 (411)
Q Consensus 205 ~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~-~p~lr~~~~~~~l~~~l~~G~--~~~~~sD~~------p 275 (411)
+.+.++++.+.|..+..+.. |..... .|+ +....+.+.+.+++|- .+.+++|.. |
T Consensus 246 d~~~~~~~l~~G~yl~fD~i--------------G~~~~~~~p~--d~~r~~~l~~lv~~g~~drILLstDa~~~~~~~p 309 (360)
T 3tn4_A 246 DPDYHRKTLAYGVYIAFDRF--------------GIQGMVGAPT--DEERVRTLLALLRDGYEKQIMLSHDTVNVWLGRP 309 (360)
T ss_dssp CHHHHHHHHTTTCEEEECCT--------------TCCCSTTCCC--HHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSC
T ss_pred CHHHHHHHHHcCCEEEEccc--------------ccccccCCCC--hHHHHHHHHHHHHhcCcceEEEecCCCcccccCC
Confidence 56777777778875543210 000000 111 2334456777778775 357899941 2
Q ss_pred CChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhC
Q 015182 276 TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332 (411)
Q Consensus 276 ~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg 332 (411)
+.... ++.....+ ++....+..+.-.+++.|++.+++-++.+.||+++|-
T Consensus 310 y~~p~------p~r~~~~~-~~y~~i~~~~ip~L~~~Gvs~e~I~~i~~~NP~rlfs 359 (360)
T 3tn4_A 310 FTLPE------PFAEMMKN-WHVEHLFVNIIPALKNEGIRDEVLEQMFIGNPAALFS 359 (360)
T ss_dssp CCCCH------HHHHHTTT-CSTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHC
T ss_pred CCCcc------cccccCCC-CCchhHHHHHHHHHHHcCCCHHHHHHHHHHhHHHHhc
Confidence 21000 00000011 1122222222333456899999999999999999873
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-05 Score=73.08 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=74.9
Q ss_pred CCceeecccccCCCCCCc-------c----------CCh-HHHHHHHHcCCceeEecCCCCCCCCC---CCHH-------
Q 015182 1 MPGLIDVHAHLDDPGRTE-------W----------EGF-PSGTKAAAAGGITTLIDMPLNSDPST---ISTE------- 52 (411)
Q Consensus 1 lPGlID~H~H~~~~~~~~-------~----------~~~-~~~~~~a~~~GvTtv~d~~~~~~~~~---~~~~------- 52 (411)
|+++||+|+|+..+.... . .++ ..-.+.+-+.||...+-.+ . .|.. .+.+
T Consensus 1 m~~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~-~-~p~~~~~~d~~~~~~~~~ 78 (327)
T 2dvt_A 1 MQGKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAHGIETMILSL-N-APAVQAIPDRRKAIEIAR 78 (327)
T ss_dssp CCSEEEEEEEECCHHHHGGGTTTSCSSHHHHHHHHHHCSSSHHHHHHHHTTEEEEEEEE-C-SSGGGGCCCHHHHHHHHH
T ss_pred CCCeEEEecccCCHHHHHHHhccCCcccccccchhcCChhHHHHHHhhhcCCcEEEEeC-C-CCcccccCChHHHHHHHH
Confidence 678999999996442100 0 022 3344556689998886554 1 1211 0111
Q ss_pred HH-HHHHHHHhcCCceEEEEEeeecCCCcc-chHHHHHHHH-CCceEEEEeccCCCC---CCCCCCCHHHHHHHHHHHHh
Q 015182 53 TL-KLKVDAAEKRIYVDVGFWGGLVPENAY-NASALEALLN-AGVLGLKSFMCPSGI---NDFPMTNASHIKEGLSVLAR 126 (411)
Q Consensus 53 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~g~~~ik~~~~~~~~---~~~~~~~~~~l~~~~~~a~~ 126 (411)
.. +...+..+... -++....++.+...+ .+++++++++ .|+.||++...+... .+ ....++.++.+++.|.+
T Consensus 79 ~~n~~~~~~~~~~p-~r~~~~~~v~p~~~~~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~ 156 (327)
T 2dvt_A 79 RANDVLAEECAKRP-DRFLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTP-LYYDLPQYRPFWGEVEK 156 (327)
T ss_dssp HHHHHHHHHHHHCT-TTEEEEECCCTTSHHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSC-BCTTSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CceEEEeecCcCCHHHHHHHHHHHHhcCCceEEEECCCCCCCcccCC-CCCCCcchHHHHHHHHH
Confidence 11 11222222111 122223334333332 4566777764 599999987664310 01 23456789999999999
Q ss_pred CCCcEEEecCCc
Q 015182 127 YKRPLLVHAEME 138 (411)
Q Consensus 127 ~g~~v~~H~~~~ 138 (411)
+|++|.+|+...
T Consensus 157 ~~lpv~iH~~~~ 168 (327)
T 2dvt_A 157 LDVPFYLHPRNP 168 (327)
T ss_dssp HTCCEEEECCCC
T ss_pred cCCeEEECCCCC
Confidence 999999998753
|
| >4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A | Back alignment and structure |
|---|
Probab=98.11 E-value=6.7e-05 Score=68.52 Aligned_cols=254 Identities=13% Similarity=0.039 Sum_probs=128.7
Q ss_pred eeecccccCCCC---CCc----------cCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEE
Q 015182 4 LIDVHAHLDDPG---RTE----------WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 70 (411)
Q Consensus 4 lID~H~H~~~~~---~~~----------~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
.||+|+|+..+. +.. .-+...-...+-+.||+.++-... .. .....+...+.++....+. +
T Consensus 5 ~iD~H~H~~~~~~~~~pw~~~~~~~~~~~~~~~~ll~~~~~~GV~~~V~v~~--~~---~~~~n~~l~~la~~~p~~~-g 78 (303)
T 4do7_A 5 RIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQA--RA---GRDETAFLLELACDEARIA-A 78 (303)
T ss_dssp CEEEEECCBCCCGGGCTTCCTTCGGGSSCBCHHHHHHHHHHTTCCEEEEECC--SS---SHHHHHHHHHHHTTCTTEE-E
T ss_pred EEeCCEecccCCCCCCCCCCCccccccCCCCHHHHHHHHHhcCCcEEEEEcc--CC---cHHHHHHHHHHHHhCCCeE-E
Confidence 499999997652 100 112233345566899998876541 11 1222333344444333222 2
Q ss_pred EEeeecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCC-CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhcc
Q 015182 71 FWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP-MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLED 149 (411)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~-~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~ 149 (411)
+.+.+.+...+..+++.++.+.|+.||+....+.. ... .+..+.+...++.++++|+++.+|+....
T Consensus 79 ~vg~v~~~~~~~~~~L~~l~~~gv~Gir~~~~~~~--~~~~~~~~~~~~~~~~~~~~~glpv~ih~~~~~---------- 146 (303)
T 4do7_A 79 VVGWEDLRAPQLAERVAEWRGTKLRGFRHQLQDEA--DVRAFVDDADFARGVAWLQANDYVYDVLVFERQ---------- 146 (303)
T ss_dssp EEECCCTTCTTHHHHHTTCCSSCEEEEECCGGGSS--CHHHHHHCHHHHHHHHHHHHTTCEEEECCCGGG----------
T ss_pred EEEEeCCCCchHHHHHHHHhhcCceEEEecCcCCC--CccccccCHHHHHHHHHHHHCCCeEEEecCHHH----------
Confidence 21112222222334454444578999997643221 000 13456788999999999999999987532
Q ss_pred CcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHH--H-----------HHHHHHHhHCC
Q 015182 150 DTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS--S-----------LDLLMEAKTNG 216 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~--~-----------~~~i~~~~~~g 216 (411)
+..+.+++++. ++.++.+.|+..+ . . .+.+..+.+ .
T Consensus 147 -----------------------l~~l~~ll~~~------P~l~iVi~H~G~p-~~~~~~~~~~~~~~w~~~l~~la~-~ 195 (303)
T 4do7_A 147 -----------------------LPDVQAFCARH------DAHWLVLDHAGKP-ALAEFDRDDTALARWRAALRELAA-L 195 (303)
T ss_dssp -----------------------HHHHHHHHHHC------CSSCEEEGGGGCC-CGGGCC---CHHHHHHHHHHHHHT-S
T ss_pred -----------------------HHHHHHHHHHC------CCCCEEEeCCCCC-CccccccccchHHHHHHHHHHHHh-C
Confidence 22344555553 3789999998753 1 0 122333332 2
Q ss_pred CCEEEEcccccccccccccCCCCcceEEcCCCCChhhHH-HHHHHHhc-CC-ccEEcCCCCCCChhhhhcccCCccccCC
Q 015182 217 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKE-KLWEALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWG 293 (411)
Q Consensus 217 ~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~-~l~~~l~~-G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~ 293 (411)
-++.+.++-........ . +. ..+ ...+.. .+...++. |. .+.+|||+ |+.... .
T Consensus 196 ~nv~~klSg~~~~~~~~---~-~~---~~~---~~~~~~~~~~~~~~~~G~dri~fgSD~-P~~~~~------------~ 252 (303)
T 4do7_A 196 PHVVCKLSGLVTEADWR---R-GL---RAS---DLRHIEQCLDAALDAFGPQRLMFGSDW-PVCLLA------------A 252 (303)
T ss_dssp TTEEEEECSCGGGSCTT---T-CC---CHH---HHHHHHHHHHHHHHHHCGGGEEECCCB-TGGGGT------------C
T ss_pred CCEEEEeCCcccccccc---c-cc---cCC---CHHHHHHHHHHHHHHhCcccEEEeCCC-CCCcCc------------C
Confidence 35777655322111000 0 00 000 011111 12222332 43 56889995 654210 0
Q ss_pred CCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 294 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 294 g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
. ....+.. +..+...+++.++.-+....|+++++|+
T Consensus 253 ~---~~~~~~~-~~~~~~~~l~~~~~~~i~~~Na~rl~~l 288 (303)
T 4do7_A 253 S---YDEVASL-VERWAESRLSAAERSALWGGTAARCYAL 288 (303)
T ss_dssp C---HHHHHHH-HHHHHHHHCCHHHHHHHTTHHHHHHTTC
T ss_pred C---HHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhCC
Confidence 0 1111111 1111124689999999999999999999
|
| >2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A | Back alignment and structure |
|---|
Probab=98.07 E-value=6e-05 Score=70.80 Aligned_cols=145 Identities=17% Similarity=0.107 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCce
Q 015182 114 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 193 (411)
Q Consensus 114 ~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 193 (411)
++.+..+++.|+++|+++.+|+.+... ..|. ..+...+.+ . |..
T Consensus 214 ~~~~~~~~~~A~~~gl~~~~HagE~~~----------------------~~~~----~~i~~al~~---l-------g~~ 257 (371)
T 2pgf_A 214 LKEYKEIFDYVRESGVPLSVHAGEDVT----------------------LPNL----NTLYSAIQV---L-------KVE 257 (371)
T ss_dssp GGGGHHHHHHHHHTTCCBEEEESCCTT----------------------SSSS----HHHHHHHHT---S-------CCS
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCCCC----------------------CCch----HHHHHHHhc---c-------CCC
Confidence 678999999999999999999976420 0010 012222221 1 333
Q ss_pred EEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCC
Q 015182 194 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 194 ~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
.+.|+....++.++++.++++|+ ..++||..-... +.. +.+ ....+.++++.|+++++|||.
T Consensus 258 -ri~Hgv~l~~~~~l~~~l~~~~i--~v~~cP~SN~~l-------~~~----~~~----~~~pi~~ll~~Gv~V~lgTD~ 319 (371)
T 2pgf_A 258 -RIGHGIRVAESQELIDMVKEKNI--LLEVCPISNVLL-------KNA----KSM----DTHPIRQLYDAGVKVSVNSDD 319 (371)
T ss_dssp -EEEECGGGGGCHHHHHHHHHTTC--EEEECHHHHHHT-------TSS----SCG----GGCTHHHHHHTTCEEEECCBC
T ss_pred -EEecchhccccHHHHHHHHHcCC--eEEECcchhHHh-------CCC----Ccc----ccChHHHHHHCCCeEEEeCCC
Confidence 47777643133456777778775 556788642111 000 000 011244567889999999995
Q ss_pred CCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 274 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 274 ~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
|... +.+ +...+.. .....+++++++ ..+|.|+++..++
T Consensus 320 -~~~~---------------~~~-l~~e~~~---a~~~~~l~~~~l-~~lt~ns~~asf~ 358 (371)
T 2pgf_A 320 -PGMF---------------LTN-INDDYEE---LYTHLNFTLEDF-MKMNEWALEKSFM 358 (371)
T ss_dssp -HHHH---------------TCC-HHHHHHH---HHHHHCCCHHHH-HHHHHHHHHHCCS
T ss_pred -Cccc---------------CCC-HHHHHHH---HHHHhCCCHHHH-HHHHHHHHHHHcC
Confidence 2211 101 1111111 122358999996 8889999999987
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=69.84 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=62.9
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCH----HHHHHHHH----HHhcCCceEEEEEeee
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST----ETLKLKVD----AAEKRIYVDVGFWGGL 75 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (411)
+||+|+|+....+ .....+.+.||+.++..+.+.... ... +.++...+ .++.. ..++....|+
T Consensus 2 ~iDtH~Hld~~~~-------~~l~~a~~~GV~~~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~a~~~-~~~v~~~~Gi 72 (261)
T 3guw_A 2 YFDSHLHSEGLGF-------SELVKLKENGIKEVCSLAFFPVKP-KYPQTMIDVFRKLTEFEPLRCEAA-GVKMHPAVGI 72 (261)
T ss_dssp CCBCCCCGGGCCH-------HHHHHHHTTSCCEECCBCCCSSCC-SSHHHHHHHHHHHHHTHHHHHHTT-TCEECCBCCC
T ss_pred eEEeccCCCCCCh-------HHHHHHHHCCCcEEEEeccCcccc-chhhhHHHHHHHHHHHHHHHHHHC-CCCEEEEEEE
Confidence 7999999975432 124567899999998765221111 111 22233322 12221 1123233343
Q ss_pred cCCCc-cchHH-HHHHHHCCceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc
Q 015182 76 VPENA-YNASA-LEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 138 (411)
Q Consensus 76 ~~~~~-~~~~~-~~~~~~~g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 138 (411)
-|... +..++ +..+.+..+.+| .+.++|. ...-.+.+++.++.|+++|+||.+|+...
T Consensus 73 HP~~~~~~~~~~~~~l~~~~vvaIGEiGLD~~-----~~~Q~~~f~~ql~lA~e~~lPv~iH~r~~ 133 (261)
T 3guw_A 73 HPRCIPPDYEFVLGYLEEGEWVAFGEIGLELV-----TDEEIEVLKSQLELAKRMDVPCIIHTPRG 133 (261)
T ss_dssp CGGGCCTTTHHHHHHHTTSCCSCEEEEECSSC-----CHHHHHHHHHHHHHHHHHTCCEEEECCSS
T ss_pred CcccccccHHHHHHHhCcCCeEEEEEecCCCC-----hHHHHHHHHHHHHHHHHhCCeEEEEcCCC
Confidence 33211 11222 233333455555 3334432 11123568889999999999999999863
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0013 Score=59.45 Aligned_cols=230 Identities=12% Similarity=0.067 Sum_probs=123.3
Q ss_pred HHHHHHHHcCCceeEecCCCCCCCC--CCCHHHHHHHHHHHhcCCceEEEEEeeecCCC-ccchHHHHHHHHCCceEEEE
Q 015182 23 PSGTKAAAAGGITTLIDMPLNSDPS--TISTETLKLKVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLNAGVLGLKS 99 (411)
Q Consensus 23 ~~~~~~a~~~GvTtv~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ik~ 99 (411)
..-.+.+-+.||+..+-.+... +. ....+.+.+..+. -..++ ....++.+.. ...+++++++.+.|+.|+++
T Consensus 50 e~~l~~md~~GV~~~V~~~~~~-~~~~~~~N~~~~~~~~~--~p~r~--~~~~~v~p~~~~~a~~eL~~~~~~g~~Gi~~ 124 (291)
T 3irs_A 50 ELMFEEMAAAGIEQGVCVGRNS-SVLGSVSNADVAAVAKA--YPDKF--HPVGSIEAATRKEAMAQMQEILDLGIRIVNL 124 (291)
T ss_dssp HHHHHHHHHTTCCEEEEECCEE-TTTEECCHHHHHHHHHH--STTTE--EEEEECCCSSHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHCCCCEEEEcCCCc-cccccccHHHHHHHHHH--CCCcE--EEEEecCccCHHHHHHHHHHHHhCCCeEEEE
Confidence 3344556689998877665211 10 0123333333221 11122 2223344333 23356676756689999998
Q ss_pred eccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHH
Q 015182 100 FMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~ 179 (411)
...+.+ .+. ..+++.+..+++.|.++|++|.+|+....... ..+ ..| ..+..+
T Consensus 125 ~~~~~~-~~~-~~~d~~~~~~~~~a~e~glpv~iH~~~~~~~~------------~~~-----~~p--------~~~~~v 177 (291)
T 3irs_A 125 EPGVWA-TPM-HVDDRRLYPLYAFCEDNGIPVIMMTGGNAGPD------------ITY-----TNP--------EHIDRV 177 (291)
T ss_dssp CGGGSS-SCC-CTTCGGGHHHHHHHHHTTCCEEEECSSSCSSS------------GGG-----GCH--------HHHHHH
T ss_pred eCCCCC-CCC-CCCCHHHHHHHHHHHHcCCeEEEeCCCCCCCC------------Ccc-----CCH--------HHHHHH
Confidence 754421 122 24567899999999999999999997631100 000 111 123344
Q ss_pred HhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHH
Q 015182 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWE 259 (411)
Q Consensus 180 ~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~ 259 (411)
+++. ++.++.+.|+... ...+.++.+.+. .++.++++-... ..| . ...+.+
T Consensus 178 ~~~~------P~l~ivl~H~G~~-~~~~~~~l~~~~-~nvy~~~Sg~~~---------------~~~---~---~~~~~~ 228 (291)
T 3irs_A 178 LGDF------PDLTVVSSHGNWP-WVQEIIHVAFRR-PNLYLSPDMYLY---------------NLP---G---HADFIQ 228 (291)
T ss_dssp HHHC------TTCCEEEEGGGTT-CHHHHHHHHHHC-TTEEEECGGGGS---------------SST---T---HHHHHH
T ss_pred HHHC------CCCEEEeecCCcc-cHHHHHHHHhHC-CCeEecHHHHhc---------------cCC---C---HHHHHH
Confidence 4543 3778889998765 444555544332 245655432110 001 1 122334
Q ss_pred HHhc-CC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCC
Q 015182 260 ALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSK 336 (411)
Q Consensus 260 ~l~~-G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~ 336 (411)
.++. |. .+.+|||+ |+... . ..+..+.+.+++.++.-+..+.|++++|++ .+.
T Consensus 229 ~~~~~g~drllfgSD~-P~~~~-------------------~----~~~~~~~~l~l~~e~~~~i~~~NA~rl~~~~~~~ 284 (291)
T 3irs_A 229 AANSFLADRMLFGTAY-PMCPL-------------------K----EYTEWFLTLPIKPDAMEKILHGNAERLLAQAGRE 284 (291)
T ss_dssp HHTTGGGGTBCCCCCB-TSSCH-------------------H----HHHHHHHTSSCCHHHHHHHHTHHHHHHHHHSCC-
T ss_pred HHHHhCcceEEEecCC-CCCCH-------------------H----HHHHHHHHCCCCHHHHHHHHHHHHHHHhCccccc
Confidence 4432 32 45789995 55320 0 112333455899999999999999999998 433
Q ss_pred C
Q 015182 337 G 337 (411)
Q Consensus 337 G 337 (411)
|
T Consensus 285 ~ 285 (291)
T 3irs_A 285 G 285 (291)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0018 Score=60.27 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=90.9
Q ss_pred CCceEEEEeccCCCCCCCCCCCH---HHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNA---SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 168 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~---~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 168 (411)
.++.||-+.-+.. + .++ +.+..+++.|++.|+++.+|+.+.....
T Consensus 172 ~~vvG~dL~g~E~---~---~~~~~~~~f~~~f~~A~~~gl~~~~HagE~~~~~-------------------------- 219 (367)
T 3iar_A 172 QTVVAIDLAGDET---I---PGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGSAE-------------------------- 219 (367)
T ss_dssp TTEEEEEEESCTT---S---TTGGGCHHHHHHHHHHHHHTCEEEEEESSSSCHH--------------------------
T ss_pred CCEEEEcCCCccc---C---CCcchHHHHHHHHHHHHHcCCeeEEecCCcCChH--------------------------
Confidence 4677776632111 1 233 6889999999999999999997643110
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCC
Q 015182 169 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 248 (411)
Q Consensus 169 e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~l 248 (411)
.+...+.. . +.. ++.|.....++.++++.++++|+ ..++||..-.... . .+.+
T Consensus 220 ---~i~~al~~---l-------g~~-RIgHgv~l~~d~~l~~~l~~~~i--~le~cP~SN~~l~-------~----~~~~ 272 (367)
T 3iar_A 220 ---VVKEAVDI---L-------KTE-RLGHGYHTLEDQALYNRLRQENM--HFEICPWSSYLTG-------A----WKPD 272 (367)
T ss_dssp ---HHHHHHHT---S-------CCS-EEEECGGGGGCHHHHHHHHHTTC--EEEECHHHHHHTS-------S----SCTT
T ss_pred ---HHHHHHHc---c-------CCc-eeeeeeeecCCHHHHHHHHhCCc--EEEECHHHHHHhC-------C----CCCc
Confidence 12222221 1 222 46776643123467777878775 6678886422110 0 0111
Q ss_pred CChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcCCCHHHHHHHHhHhH
Q 015182 249 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERP 327 (411)
Q Consensus 249 r~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~~~al~~~T~n~ 327 (411)
....+..++++|++++|+||. |... +.. +..-+..+ ...++++++ +..++.|+
T Consensus 273 ----~~hPi~~ll~~Gv~v~l~TDd-p~~~---------------~~~-----l~~e~~~a~~~~glt~~e-l~~l~~ns 326 (367)
T 3iar_A 273 ----TEHAVIRLKNDQANYSLNTDD-PLIF---------------KST-----LDTDYQMTKRDMGFTEEE-FKRLNINA 326 (367)
T ss_dssp ----SCCHHHHHHHTTCCEEECCBS-HHHH---------------TCC-----HHHHHHHHHHHHCCCHHH-HHHHHHHH
T ss_pred ----ccChHHHHHHCCCEEEECCCC-cccc---------------CCC-----HHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 112455668889999999995 3211 111 11112222 235899999 67778999
Q ss_pred HHHhCC
Q 015182 328 AKLAGQ 333 (411)
Q Consensus 328 A~~lg~ 333 (411)
++...+
T Consensus 327 i~~sf~ 332 (367)
T 3iar_A 327 AKSSFL 332 (367)
T ss_dssp HHTSSS
T ss_pred HHHhCC
Confidence 998887
|
| >3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00099 Score=61.53 Aligned_cols=158 Identities=15% Similarity=0.053 Sum_probs=90.7
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
.++.||-+.- .. ...+.+.+..+++.|++.|+++.+|+.+.... .
T Consensus 163 ~~vvG~dL~g-~E-----~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~-----------------------------~ 207 (343)
T 3rys_A 163 APIAGIGLDS-AE-----VGNPPSKFERLYQRAAEAGLRRIAHAGEEGPA-----------------------------S 207 (343)
T ss_dssp CCCCEEEEES-CC-----TTCCGGGGHHHHHHHHHTTCEEEEEESSSSCH-----------------------------H
T ss_pred CCEEEEecCC-cc-----cCCCHHHHHHHHHHHHHCCCeEEEeeCCCCCH-----------------------------H
Confidence 5677776532 11 12456789999999999999999999764210 0
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
.+...+... +.. ++.|.....++.++++.++++|+ ..++||..-.... . .+.+
T Consensus 208 ~i~~al~~l----------g~~-rIgHgv~l~~d~~l~~~l~~~~i--~le~cP~SN~~l~-------~----~~~~--- 260 (343)
T 3rys_A 208 YITEALDVL----------HVE-RIDHGIRCMEDTDVVQRLVAEQV--PLTVCPLSNVRLR-------A----VDKL--- 260 (343)
T ss_dssp HHHHHHHTS----------CCS-EEEECGGGGGCHHHHHHHHHHTC--CEEECHHHHHHTT-------S----SSCG---
T ss_pred HHHHHHhcC----------Ccc-eeeeeeeecCChHHHHHHHhcCC--CeeEchhHHHHhC-------C----CCCc---
Confidence 122223211 222 36777643123467777777776 4467886422110 0 0000
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHh
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~l 331 (411)
....+.+++++|++++|+||..... +.+ +...+. ......+++++++ ..++.|+++..
T Consensus 261 -~~hPi~~ll~~Gv~V~l~TDdp~~~----------------~~~-l~~E~~---~a~~~~~l~~~~l-~~l~~nsi~~s 318 (343)
T 3rys_A 261 -ADHPLPEMLAIGLNVCVNSDDPAYF----------------GGY-VDDNFE---QLVKVLEFSVPEQ-ATLAANSIRSS 318 (343)
T ss_dssp -GGCSHHHHHHTTCCEEECCBSTTTT----------------TCC-HHHHHH---HHHHHHCCCHHHH-HHHHHHHHHHS
T ss_pred -ccchHHHHHHCCCeEEEeCCCcccc----------------CCC-HHHHHH---HHHHHcCCCHHHH-HHHHHHHHHHH
Confidence 1123455678899999999963221 111 111111 1122348999995 77799999998
Q ss_pred CC
Q 015182 332 GQ 333 (411)
Q Consensus 332 g~ 333 (411)
.+
T Consensus 319 f~ 320 (343)
T 3rys_A 319 FA 320 (343)
T ss_dssp SS
T ss_pred CC
Confidence 87
|
| >3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00091 Score=61.32 Aligned_cols=158 Identities=15% Similarity=0.068 Sum_probs=87.4
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
.++.||-+.-+ . ...+.+.+..+++.|++.|+++.+|+.+.... .
T Consensus 160 ~~vvG~dL~g~-E-----~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~-----------------------------~ 204 (326)
T 3pao_A 160 DAFIAVGLDSS-E-----VGHPPSKFQRVFDRARSEGFLTVAHAGEEGPP-----------------------------E 204 (326)
T ss_dssp GGCSEEEEESC-C-----TTCCGGGGHHHHHHHHHTTCEECEEESSSSCH-----------------------------H
T ss_pred ccceeeCCCCC-C-----CCCCHHHHHHHHHHHHHcCCceeeecCCCCCH-----------------------------H
Confidence 36777765321 1 12356789999999999999999999764210 0
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
.+...+... +.. .+.|+....++.++++.++++|+ ..++||..-.... . .+.+
T Consensus 205 ~i~~al~~l----------g~~-rigHgv~l~~d~~l~~~l~~~~i--~le~cP~SN~~l~-------~----~~~~--- 257 (326)
T 3pao_A 205 YIWEALDLL----------KVE-RIDHGVRAFEDERLMRRLIDEQI--PLTVCPLSNTKLC-------V----FDDM--- 257 (326)
T ss_dssp HHHHHHHTT----------CCS-SEEECGGGGGCHHHHHHHHHHTC--CEEECHHHHHHTT-------S----SSSG---
T ss_pred HHHHHHhcC----------CCc-eeeeeeeecccHHHHHHHHHcCC--eEEECchhHHHhC-------C----CCCc---
Confidence 122223211 111 25676543123456777777776 4567885422110 0 0000
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHh
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~l 331 (411)
....+.+++++|++++++||. |... +.+ +...+ .......++++++ +..++.|+++..
T Consensus 258 -~~hPi~~ll~~Gv~V~l~TDd-p~~~---------------~~~-l~~e~---~~a~~~~~l~~~~-l~~l~~nsi~~s 315 (326)
T 3pao_A 258 -SQHTILDMLERGVKVTVNSDD-PAYF---------------GGY-VTENF---HALQQSLGMTEEQ-ARRLAQNSLDAR 315 (326)
T ss_dssp -GGCCHHHHHHHTCCEEECCBS-HHHH---------------TCC-HHHHH---HHHHHHHCCCHHH-HHHHHHHHHHTC
T ss_pred -ccChHHHHHHCCCeEEEeCCC-cccC---------------CCC-HHHHH---HHHHHHcCCCHHH-HHHHHHHHHHHH
Confidence 011234557779999999995 3211 101 11111 1112335899999 588889999987
Q ss_pred CC
Q 015182 332 GQ 333 (411)
Q Consensus 332 g~ 333 (411)
.+
T Consensus 316 f~ 317 (326)
T 3pao_A 316 LV 317 (326)
T ss_dssp C-
T ss_pred Hh
Confidence 66
|
| >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.018 Score=52.39 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=40.0
Q ss_pred chHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc
Q 015182 82 NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 138 (411)
Q Consensus 82 ~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 138 (411)
..++++++++ .|+.|+|++..+. +. .+++..+..+++.+.++|++|.+|+...
T Consensus 112 a~~el~r~~~~~G~~Gv~l~~~~~---~~-~l~d~~~~p~~~~~~e~g~pv~iH~g~~ 165 (312)
T 3ij6_A 112 ACKVISSIKDDENLVGAQIFTRHL---GK-SIADKEFRPVLAQAAKLHVPLWMHPVFD 165 (312)
T ss_dssp HHHHHHHHHHCTTEEEEEEESEET---TE-ETTSTTTHHHHHHHHHTTCCEEEECCCC
T ss_pred HHHHHHHHHHhCCCceEeccCCCC---CC-CCCCccHHHHHHHHHHcCCeEEEcCCCC
Confidence 3567777764 7999999875433 21 3456778999999999999999998653
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0063 Score=56.95 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=37.4
Q ss_pred CceeecccccCCCCCC--------ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHh
Q 015182 2 PGLIDVHAHLDDPGRT--------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 62 (411)
Q Consensus 2 PGlID~H~H~~~~~~~--------~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~ 62 (411)
+-|||+|+|+..+-+. ..+++......|.+.||+.++..+ .+.+..+...+.++
T Consensus 12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g-------~~l~~s~~~~~La~ 73 (401)
T 3e2v_A 12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTG-------SSIAESQSAIELVS 73 (401)
T ss_dssp CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECC-------CSHHHHHHHHHHHH
T ss_pred CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEec-------CCHHHHHHHHHHHH
Confidence 4699999999765321 235677778889999999998766 23455555555443
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0028 Score=57.60 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=72.3
Q ss_pred ceeecccccCCCCCC----------------ccCChHHHHHHHHcCCceeEecCCCCCCCCCC--CHH-------HH-HH
Q 015182 3 GLIDVHAHLDDPGRT----------------EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--STE-------TL-KL 56 (411)
Q Consensus 3 GlID~H~H~~~~~~~----------------~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~--~~~-------~~-~~ 56 (411)
.+||+|+|+..+... ...+...-.+.+-+.||+..+-.+. .|... +.+ .. +.
T Consensus 2 ~~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~--~~~~~~~~~~~~~~~~~~~n~~ 79 (307)
T 2f6k_A 2 SKIDFHTHYLPTSYVEALKRHVPGDPDGWPTPEWTPQLTLNFMRDNDISYSILSLS--SPHVNFGDKAETIRLVEAANDD 79 (307)
T ss_dssp CEEEEEEECCCHHHHHHHHHHCCSSGGGSCCCCCCHHHHHHHHHHTTEEEEEEECC--SSCSCSSCHHHHHHHHHHHHHH
T ss_pred CeEEEecCcCCHHHHHHHHHhccCCcccCcCCCCCHHHHHHHHHHcCCCEEEEeCC--CcccccCCHHHHHHHHHHHHHH
Confidence 489999998643210 0133445556677899998765441 11111 110 11 11
Q ss_pred HHHHHhcCCceEEEEEeeecCCC-ccchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 57 KVDAAEKRIYVDVGFWGGLVPEN-AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
..+..+.... ++...+...... ...++++.++++ .|+.|+++...+.+ . ..+++.++.+++.|.++|++|.+|
T Consensus 80 ~~~~~~~~p~-r~~~~~~~p~~~~~~~~~el~~~~~~~g~~gi~~~~~~~~---~-~~~~~~~~~~~~~a~~~~lpv~iH 154 (307)
T 2f6k_A 80 GKSLAQQYPD-QLGYLASLPIPYELDAVKTVQQALDQDGALGVTVPTNSRG---L-YFGSPVLERVYQELDARQAIVALH 154 (307)
T ss_dssp HHHHHHHCTT-TEEEEECCCTTCHHHHHHHHHHHHHTSCCSEEEEESEETT---E-ETTCGGGHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHhCcc-ceeEEEeCCCCCHHHHHHHHHHHHhccCCcEEEEeccCCC---C-CCCcHhHHHHHHHHHHcCCeEEEC
Confidence 2222222111 222222222122 223566777664 69999998776532 1 234577999999999999999999
Q ss_pred cCCc
Q 015182 135 AEME 138 (411)
Q Consensus 135 ~~~~ 138 (411)
+...
T Consensus 155 ~~~~ 158 (307)
T 2f6k_A 155 PNEP 158 (307)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9764
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.038 Score=51.61 Aligned_cols=161 Identities=14% Similarity=0.070 Sum_probs=89.6
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
.++.||-+- ... .+ .+++.+..+++.|++.|+++.+|+.+... |. .
T Consensus 180 ~~VvG~dL~--g~E-~~---~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~------------------------p~----~ 225 (380)
T 4gxw_A 180 DEVAGIGID--YRE-ND---RPPELFWKAYRDARAAGFRTTAHAGEFGM------------------------PW----R 225 (380)
T ss_dssp TTBCEEEEE--SCC-TT---CCGGGGHHHHHHHHHTTCEEEEEESCTTC------------------------CH----H
T ss_pred CCEEEEeec--CCC-CC---CCHHHHHHHHHHHHHcCCCeeeeccccCC------------------------ch----H
Confidence 467787653 221 12 34567889999999999999999976321 10 0
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
.+..+++.. +. -+|.|.....++.++++..+++++ ..++||..-... +..|... .
T Consensus 226 ~i~~al~~l----------ga-~RIgHG~~~~~d~~L~~~l~~~~I--~lEvCP~SN~~l-----------~~v~~~~-~ 280 (380)
T 4gxw_A 226 NVETAVDLL----------HV-DRVDHGYTIVDNPELCARYAERGI--VFTVVPTNSYYL-----------RTLPPDQ-W 280 (380)
T ss_dssp HHHHHHHTS----------CC-SEEEECGGGGGCHHHHHHHHHHTC--EEEECTTCHHHH-----------HHSCTTT-H
T ss_pred HHHHHHHHc----------CC-cccccceeeccChHHHHHHHHhCc--eeEECCcchhhh-----------ccccccc-c
Confidence 123333321 11 135665432145577788877775 677898532111 0111100 0
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhHhHHHH
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~~~al~~~T~n~A~~ 330 (411)
.....+..+++.|++++|+||. |.. | |. .+..-+.. ....+++.+++. ..+.|+.+.
T Consensus 281 ~~~HP~~~l~~~Gv~vtinTDD-p~~----------f-----~t-----~Ls~Ey~~~~~~~gls~~dl~-~l~~nsi~~ 338 (380)
T 4gxw_A 281 AERHPMRKMPGLGLKIHPNTDD-PTL----------H-----KV-----NPSEAWELMFSHFGFTIADLK-QFMLNGIDG 338 (380)
T ss_dssp HHHCGGGGTGGGTCEEEECCBS-HHH----------H-----TC-----CHHHHHHHHHHTSCCCHHHHH-HHHHHHHHH
T ss_pred cccChHHHHHHCCCeEEECCCC-chh----------h-----CC-----CHHHHHHHHHHHhCcCHHHHH-HHHHHHHHH
Confidence 1112344457789999999995 211 1 11 12222222 234689999965 457888888
Q ss_pred hCC
Q 015182 331 AGQ 333 (411)
Q Consensus 331 lg~ 333 (411)
-.+
T Consensus 339 sF~ 341 (380)
T 4gxw_A 339 AWV 341 (380)
T ss_dssp SSS
T ss_pred HcC
Confidence 776
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.055 Score=49.65 Aligned_cols=53 Identities=21% Similarity=0.140 Sum_probs=41.4
Q ss_pred chHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc
Q 015182 82 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 138 (411)
Q Consensus 82 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 138 (411)
..++++++.+.|+.|+++...+. +. .++++.+..+++.+.++|++|.+|+...
T Consensus 129 a~~el~~~~~~g~~Gv~l~~~~~---~~-~l~d~~~~p~~~~~~e~~lpv~iH~~~~ 181 (334)
T 2hbv_A 129 ACKEASRAVAAGHLGIQIGNHLG---DK-DLDDATLEAFLTHCANEDIPILVHPWDM 181 (334)
T ss_dssp HHHHHHHHHHHTCCCEEEESCBT---TB-CTTSHHHHHHHHHHHHTTCCEEEECCSC
T ss_pred HHHHHHHHHHcCCeEEEECCCCC---CC-CCCcHHHHHHHHHHHHCCCEEEECCCCC
Confidence 35667776677999999876543 22 3567899999999999999999999763
|
| >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.041 Score=50.51 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=40.3
Q ss_pred chHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc
Q 015182 82 NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 138 (411)
Q Consensus 82 ~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 138 (411)
.+++++++++ .|+.||++...+. +. .++++.+..+++.+.++|++|.+|+...
T Consensus 125 a~~el~~~~~~~g~~Gv~l~~~~~---~~-~l~d~~~~~~~~~~~e~~lpv~iH~~~~ 178 (336)
T 2wm1_A 125 AVKEMERCVKELGFPGVQIGTHVN---EW-DLNAQELFPVYAAAERLKCSLFVHPWDM 178 (336)
T ss_dssp HHHHHHHHHHTSCCSEEEEESEET---TE-ETTCGGGHHHHHHHHHHTCEEEEECCSC
T ss_pred HHHHHHHHHHccCCeEEEECCcCC---CC-CCCCccHHHHHHHHHHcCCEEEECCCCC
Confidence 3566777774 6999999865543 22 2456789999999999999999999753
|
| >4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.7 Score=42.95 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=40.9
Q ss_pred hHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcc
Q 015182 83 ASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK 139 (411)
Q Consensus 83 ~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~ 139 (411)
.+++++.++ .|+.|+|++..+. +. .+++..+..+++.+.++|++|.+|+....
T Consensus 162 ~~EL~r~~~~~G~~Gv~l~~~~~---g~-~l~d~~~~pi~~~~~e~g~pV~iH~g~~~ 215 (373)
T 4inf_A 162 AREIHRGARELGFKGIQINSHTQ---GR-YLDEEFFDPIFRALVEVDQPLYIHPATSP 215 (373)
T ss_dssp HHHHHHHHHTSCCCCEEECSCBT---TB-CTTSGGGHHHHHHHHHHTCCEEECCCCCC
T ss_pred HHHHHHHHhhcCceEEEECCCCC---CC-CCCCcchHHHHHHHHHcCCeEEECCCCCC
Confidence 567777776 4999999865433 22 34667899999999999999999997653
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.3 Score=45.21 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=40.6
Q ss_pred chHHHHHHH-HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc
Q 015182 82 NASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 138 (411)
Q Consensus 82 ~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 138 (411)
..+++++.+ +.|+.|+|++..+. + ..+++..+..+++.+.++|++|.+|+...
T Consensus 143 a~~El~r~~~~~G~~Gv~l~~~~~---~-~~~~d~~~~p~~~~~~e~g~pV~iH~g~~ 196 (357)
T 3nur_A 143 AAREFERCINDLGFKGALIMGRAQ---D-GFLDQDKYDIIFKTAENLDVPIYLHPAPV 196 (357)
T ss_dssp HHHHHHHHHHTTCCCCEEEESCBT---T-BCTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred HHHHHHHHHhhcCceEEEeCCCCC---C-CCCCCccHHHHHHHHHhcCCeEEEecCCC
Confidence 456777755 58999999874432 1 13566789999999999999999999764
|
| >2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 | Back alignment and structure |
|---|
Probab=92.58 E-value=0.21 Score=50.13 Aligned_cols=101 Identities=11% Similarity=-0.025 Sum_probs=54.2
Q ss_pred EEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCC
Q 015182 196 IVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 275 (411)
Q Consensus 196 i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p 275 (411)
+.|+....++..+++.++++++ ..++||..-... . +.+. ...+.+++++|++++|+||...
T Consensus 541 IgHGv~l~edp~Li~lla~~~I--~vevCP~SN~kl-------~------~~~~----~HPi~~ll~~Gv~VsLgTDdp~ 601 (701)
T 2a3l_A 541 IAHGINLRKSPVLQYLYYLAQI--GLAMSPLSNNSL-------F------LDYH----RNPFPVFFLRGLNVSLSTDDPL 601 (701)
T ss_dssp CSCCGGGGGCHHHHHHHHHHTC--CEEECHHHHTTT-------T------CCST----TCSHHHHHHTTCCEEECCBCHH
T ss_pred EEEEeecccCHHHHHHHHHcCC--cEEECccchhhh-------c------cCch----HhHHHHHHHCCCcEEEeCCCcc
Confidence 4555432123345666666675 456788642110 0 0010 1124456788999999999632
Q ss_pred CChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 276 TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 276 ~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.. +... ......+.......+++..++.++ |.|+++..++
T Consensus 602 ~~----------------~~t~-~dL~~Ey~~aa~~~~ls~~dl~~l-a~Ns~~asfl 641 (701)
T 2a3l_A 602 QI----------------HLTK-EPLVEEYSIAASVWKLSACDLCEI-ARNSVYQSGF 641 (701)
T ss_dssp HH----------------CCSS-SHHHHHHHHHHHHHTCCHHHHHHH-HHHHHHHSCC
T ss_pred cc----------------CCCC-cCHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHhCC
Confidence 21 1100 001111111223347999997777 9999999998
|
| >3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A | Back alignment and structure |
|---|
Probab=92.14 E-value=0.32 Score=42.80 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=26.1
Q ss_pred eeecccccCC---CCCCccCChHHHHHHHHcCCceeEecCC
Q 015182 4 LIDVHAHLDD---PGRTEWEGFPSGTKAAAAGGITTLIDMP 41 (411)
Q Consensus 4 lID~H~H~~~---~~~~~~~~~~~~~~~a~~~GvTtv~d~~ 41 (411)
+||.|+|.-- .|..+.+....-.+.|.+.|++.+.-.+
T Consensus 1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~~T~ 41 (262)
T 3qy7_A 1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTIIATP 41 (262)
T ss_dssp CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 6999999852 2323333333467889999999998655
|
| >3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A* | Back alignment and structure |
|---|
Probab=84.44 E-value=0.67 Score=44.78 Aligned_cols=124 Identities=19% Similarity=0.148 Sum_probs=67.2
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHH--HHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSV--LARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWE 169 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~--a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e 169 (411)
.++.||-+- .+...|. +.+.+..+++. |++.|+++.+|+.+..... ..++
T Consensus 291 ~~VvG~DLa--G~E~~g~---p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~g--------------------~~~~--- 342 (508)
T 3lgd_A 291 TVVAGFDLV--GHEDTGH---SLHDYKEALMIPAKDGVKLPYFFHAGETDWQG--------------------TSID--- 342 (508)
T ss_dssp TTEEEEEEE--SCTTTSC---CTGGGHHHHTHHHHTTCCCCBCCEECCSSCCS--------------------STTT---
T ss_pred CceEEeccC--CCCCCCC---CHHHHHHHHHHHHHHHcCCceeeecccccCCC--------------------CCcH---
Confidence 467777652 2111122 34567788888 8899999999997642100 0000
Q ss_pred HHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCC
Q 015182 170 EAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR 249 (411)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr 249 (411)
..+..++.+ +. -+|.|.....++.++++.++++++ ..++||..-.... . .+.+
T Consensus 343 -~~i~~Al~L-----------ga-~RIgHGv~l~~dp~l~~~l~~~~I--~levCP~SN~~l~-------~----v~~~- 395 (508)
T 3lgd_A 343 -RNILDALML-----------NT-TRIGHGFALSKHPAVRTYSWKKDI--PIEVCPISNQVLK-------L----VSDL- 395 (508)
T ss_dssp -THHHHHHHT-----------TC-SSEEECTTGGGCHHHHHHHHHTTC--CEEECHHHHHHTT-------S----CSSG-
T ss_pred -HHHHHHHhc-----------CC-ceeeeeEecCccHHHHHHHHhcCC--eEEECcchHHHhC-------C----CCCc-
Confidence 012233321 11 136777654123567788888775 4567885422110 0 0000
Q ss_pred ChhhHHHHHHHHhcCCccEEcCCC
Q 015182 250 DAANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 250 ~~~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
....+..++++|++++|+||.
T Consensus 396 ---~~hP~~~ll~~Gv~V~l~TDd 416 (508)
T 3lgd_A 396 ---RNHPVATLMATGHPMVISSDD 416 (508)
T ss_dssp ---GGCTHHHHHHTTCCEEECCBS
T ss_pred ---ccChHHHHHHCCCcEEEcCCC
Confidence 112344567889999999995
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=81.86 E-value=14 Score=31.82 Aligned_cols=106 Identities=13% Similarity=-0.004 Sum_probs=61.0
Q ss_pred HHHHHHHHCCceEEEEeccCCC---CCC---CCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 84 SALEALLNAGVLGLKSFMCPSG---IND---FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 84 ~~~~~~~~~g~~~ik~~~~~~~---~~~---~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
+.++.+.+.|..++-++..... ..+ ....+++.++++.+.++++|+.+..|........
T Consensus 26 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~--------------- 90 (262)
T 3p6l_A 26 EALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVAEKS--------------- 90 (262)
T ss_dssp HHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECCSST---------------
T ss_pred HHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCCccH---------------
Confidence 4556666788888887653210 000 1234677788888888889988887754321100
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccc
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCP 225 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p 225 (411)
..+.+.++.+.+. |.+....|.... .-.++.+.+++.|+.+..+..+
T Consensus 91 -------------~~~~~~i~~A~~l-------Ga~~v~~~~~~~-~~~~l~~~a~~~gv~l~~En~~ 137 (262)
T 3p6l_A 91 -------------SDWEKMFKFAKAM-------DLEFITCEPALS-DWDLVEKLSKQYNIKISVHNHP 137 (262)
T ss_dssp -------------THHHHHHHHHHHT-------TCSEEEECCCGG-GHHHHHHHHHHHTCEEEEECCS
T ss_pred -------------HHHHHHHHHHHHc-------CCCEEEecCCHH-HHHHHHHHHHHhCCEEEEEeCC
Confidence 1245666777665 666666664432 2224455556667776666544
|
| >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A | Back alignment and structure |
|---|
Probab=80.97 E-value=0.99 Score=39.17 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=27.9
Q ss_pred CceeecccccCC---CCCCccCChHHHHHHHHcCCceeEecCC
Q 015182 2 PGLIDVHAHLDD---PGRTEWEGFPSGTKAAAAGGITTLIDMP 41 (411)
Q Consensus 2 PGlID~H~H~~~---~~~~~~~~~~~~~~~a~~~GvTtv~d~~ 41 (411)
.|++|.|+|.-. .|..+.++...-.+.|.+.|++.+.-.+
T Consensus 3 ~~m~D~H~Ht~~~~ddg~~~~e~~~e~i~~A~~~Gi~~i~~Td 45 (247)
T 2wje_A 3 MGMIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTS 45 (247)
T ss_dssp -CEEECCBCCSTTSSSSCSSHHHHHHHHHHHHHTTEEEEECCC
T ss_pred CCCEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 579999999842 2333334444678899999999997544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 411 | ||||
| d1nfga2 | 330 | c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pi | 3e-60 | |
| d2ftwa2 | 334 | c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolas | 2e-58 | |
| d1gkpa2 | 335 | c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [Ta | 2e-57 | |
| d2fvka2 | 384 | c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolas | 5e-57 | |
| d1kcxa2 | 334 | c.1.9.6 (A:67-400) Dihydropyrimidinase related pro | 6e-57 | |
| d1ynya2 | 332 | c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR | 2e-53 | |
| d1xrta2 | 310 | c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aqui | 5e-51 | |
| d1gkra2 | 325 | c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter au | 2e-46 | |
| d2eg6a1 | 343 | c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli | 8e-25 | |
| d2vhla2 | 301 | c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphat | 3e-21 | |
| d1i0da_ | 331 | c.1.9.3 (A:) Phosphotriesterase (parathion hydrola | 3e-20 | |
| d1onwa2 | 284 | c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catal | 4e-19 | |
| d1xrta1 | 112 | b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorot | 2e-09 | |
| d1kcxa1 | 142 | b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase r | 4e-07 | |
| d1nfga1 | 127 | b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho | 3e-06 | |
| d1gkra1 | 126 | b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthro | 3e-06 | |
| d1p1ma1 | 123 | b.92.1.4 (A:1-49,A:331-404) Hypothetical protein T | 8e-06 | |
| d1o12a2 | 288 | c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphat | 2e-05 | |
| d1gkpa1 | 123 | b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermu | 4e-05 | |
| d2icsa2 | 267 | c.1.9.14 (A:55-321) Putative adenine deaminase EF0 | 5e-05 | |
| d2ftwa1 | 150 | b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amid | 5e-05 | |
| d1ejxc1 | 181 | b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit o | 8e-05 | |
| d1k1da1 | 128 | b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill | 1e-04 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 2e-04 | |
| d1m7ja2 | 61 | b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydro | 3e-04 | |
| d4ubpc2 | 390 | c.1.9.2 (C:132-434,C:484-570) alpha-subunit of ure | 0.002 |
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 196 bits (499), Expect = 3e-60
Identities = 80/336 (23%), Positives = 134/336 (39%), Gaps = 19/336 (5%)
Query: 3 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
G IDVH H++ + F + T AAA GG TT++D D E +
Sbjct: 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFC-QQDRGHSLAEAVAKWDGM 59
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A + +D G+ ++ LE L + G+ K FM M + + +
Sbjct: 60 AGGKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFM---AYRGMNMIDDVTLLKT 116
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVA 180
L + ++VHAE + +++ + + + +RPP E A L +A
Sbjct: 117 LDKAVKTGSLVMVHAENGDAA-DYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALA 175
Query: 181 KDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF---SAEEIPD 237
+ A ++IVH++ S + +M AK+ G ETC HYL E
Sbjct: 176 EIV-------NAPIYIVHVTCEESL-EEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF 227
Query: 238 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGIS 296
++ PP R + + LW AL +G + +SSDH K +F G
Sbjct: 228 EGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAP 287
Query: 297 SLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG 332
++ L + + + ++L Q + RPAK+ G
Sbjct: 288 GVEERLMMVYQGVNEGRISLTQFVELVATRPAKVFG 323
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 192 bits (487), Expect = 2e-58
Identities = 63/339 (18%), Positives = 114/339 (33%), Gaps = 20/339 (5%)
Query: 2 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 59
PG ID H H P G + F GT+AA AGG T +ID E
Sbjct: 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFV-IPTRGQSLLEAYDQWKK 59
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
A++++ D + + + +E L+ G+ SF C + M +
Sbjct: 60 WADEKVNCDYSLHVAITWWSEQVSREMEILVKER--GVNSFKCFMAYKNSFMVTDQEMYH 117
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
VHAE + + + + +RP + E A + +
Sbjct: 118 IFKRCKELGAIAQVHAENGDMV-FEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVI 176
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
A + + + D++ + + G + E L + + D
Sbjct: 177 ADSVC--------TPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHD 228
Query: 240 TRF-----KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 294
R P D K L + L G +D + +D+ + K + + +F K G
Sbjct: 229 WRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNG 288
Query: 295 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 332
++ ++ + + W G G +T Q S A++
Sbjct: 289 VNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFN 327
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 189 bits (480), Expect = 2e-57
Identities = 86/347 (24%), Positives = 141/347 (40%), Gaps = 20/347 (5%)
Query: 4 LIDVHAHLDDPGRTEW--EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
ID H H+ P + + +G+KAA GG TT I+M + + E +L A
Sbjct: 1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMC-CPSRNDDALEGYQLWKSKA 59
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 121
E Y D F + + L ++ G+ K F+ F + + + L
Sbjct: 60 EGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTL 116
Query: 122 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 181
+ + H E + R + T + +RP + E T +
Sbjct: 117 RLAKELGVIVTAHCENAELVGRLQQKLLSEGKT-GPEWHEPSRPEAVEAEGTARFATFLE 175
Query: 182 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD-- 239
T GA ++VHLS + D M AK G I +E+ + G
Sbjct: 176 TT-------GATGYVVHLSCKPAL-DAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVE 227
Query: 240 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
++ +PP+RD N++ LW+AL G ID + +DH P E KLL + F GI ++
Sbjct: 228 AMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAI 287
Query: 299 QFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGN 343
+ + + ++YG G + + + S + AKL G KG IA+G+
Sbjct: 288 EDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGS 334
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 189 bits (481), Expect = 5e-57
Identities = 76/393 (19%), Positives = 138/393 (35%), Gaps = 66/393 (16%)
Query: 3 GLIDVHAHLDDPGR---TEWEGFPSGTKAAAAGGITTLIDMPLNS---DPSTISTETLKL 56
G ID H H+D+P + + T++A AGG TT++ + E++KL
Sbjct: 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKL 60
Query: 57 KVD-AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPM 111
VD +E+ +Y D G L + A E L + S
Sbjct: 61 DVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQ 120
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171
+ I + + ++HAE + ++ ++ T + +RP E
Sbjct: 121 ISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLT-DAYYHGVSRPSIVEGE 179
Query: 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFS 231
A +T+A + VH+S ++ +++ +A+T G + ETCP Y S
Sbjct: 180 ATNRAITLATTM-------DTPILFVHVSSPQAA-EVIKQAQTKGLKVYAETCPQYALLS 231
Query: 232 AEEIPDGD------------------------------TRFKCAPPIRDAANKEKLWEAL 261
+++ C+PPIR ++ +W+ +
Sbjct: 232 DAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGM 291
Query: 262 MDGHIDMLSSDHSPTVPELKLL-------------DEGNFLKAWGGISSLQFVLPVTWSY 308
+G ++ SDH K G F G+ + +P+ + Y
Sbjct: 292 NNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDY 351
Query: 309 GRKYG--VTLEQLASWWSERPAKLAG-QVSKGA 338
G G ++ +L PAK+ G KG+
Sbjct: 352 GYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 188 bits (477), Expect = 6e-57
Identities = 70/339 (20%), Positives = 117/339 (34%), Gaps = 20/339 (5%)
Query: 2 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 59
PG IDV+ +L P G T + F GTKAA AGG T +ID +P + + + +
Sbjct: 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHV-VPEPGSSLLTSFEKWHE 59
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
AA+ + D + LE L+ G+ SF D + S + E
Sbjct: 60 AADTKSCCDYSLHVDITSWYDGVREELEVLVQDK--GVNSFQVYMAYKDLYQMSDSQLYE 117
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
+ L +LVHA + + + +RP E A+ + +
Sbjct: 118 AFTFLKGLGAVILVHA-ENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAI 176
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE----- 234
A ++I + S++ D++ A+ G + E L
Sbjct: 177 AGRI-------NCPVYITKVMSKSAA-DIIALARKKGPLVFGEPIAASLGTDGTHYWSKN 228
Query: 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 294
P D + L L G + + S H P K + + NF G
Sbjct: 229 WAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEG 288
Query: 295 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 332
++ ++ + V W G + Q + S AK+
Sbjct: 289 VNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAKIFN 327
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 332 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 179 bits (454), Expect = 2e-53
Identities = 90/338 (26%), Positives = 147/338 (43%), Gaps = 21/338 (6%)
Query: 3 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60
G ID H HLD P G + F +GT+AAA GG T+++D + + +
Sbjct: 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFC-LTKKGESLKSAIATWHEK 59
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKE 119
A + +D GF + N LE+++++ G+ LK FM + + + +
Sbjct: 60 ARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNV---FQADDETLFK 116
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
L + VHAE ++ + + TRPP E A + +
Sbjct: 117 TLVKAKELGALVQVHAENGDVL-DYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIAL 175
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
+ L++VH+S AS+ + EA+ G ++ ETCP YLA + D
Sbjct: 176 TALAG-------SQLYVVHVSCASAV-QRIAEAREKGWNVYGETCPQYLALDVSIMDQPD 227
Query: 240 ---TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGI 295
++ +PP+R+ N+E LW AL +G + + SDH P K L G+F K G
Sbjct: 228 FEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGG 287
Query: 296 SSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 332
++ L + +S G + G ++L Q S + AKL G
Sbjct: 288 PLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFG 325
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 171 bits (434), Expect = 5e-51
Identities = 81/330 (24%), Positives = 143/330 (43%), Gaps = 24/330 (7%)
Query: 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 62
G ID+H HL DPG+T E SG++ A AGG TT++ MP N++P +T + + ++
Sbjct: 1 GFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSK 59
Query: 63 KRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLS 122
V G + + + G +F + P+ ++S +++ L
Sbjct: 60 SVGLCRVLPTGTITKGR--KGKEIADFYSLKEAGCVAFTD----DGSPVMDSSVMRKALE 113
Query: 123 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 182
+ ++ P++ H E +K + + + + L +R P EE I +A+
Sbjct: 114 LASQLGVPIMDHCEDDKLAYGVINEGEVS-----ALLGLSSRAPEAEEIQIARDGILAQR 168
Query: 183 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 242
T + SL+++ K G IT E P++L F+ E+ +
Sbjct: 169 TG--------GHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGANA 220
Query: 243 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 302
+ PP+R ++ L E + G ID ++DH+P K L A GI LQ L
Sbjct: 221 RVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL----VEFAMPGIIGLQTAL 276
Query: 303 PVTWSYGRKYGVTLEQLASWWSERPAKLAG 332
P RK ++L++L ++ PA++ G
Sbjct: 277 PSALELYRKGIISLKKLIEMFTINPARIIG 306
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 160 bits (405), Expect = 2e-46
Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 21/335 (6%)
Query: 3 GLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA 61
G++D H H+ D G F +++AA GGITT+I+MP + P T + + K A
Sbjct: 1 GVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQA 59
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 121
+R+ VD +GG VP N + + +AG +G KS M S F + + E
Sbjct: 60 GQRLKVDFALYGGGVP---GNLPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIF 116
Query: 122 SVLARYKRPLLVHA---EMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178
+A ++VHA + + ++ +K + Y ++P E
Sbjct: 117 QEIAACGSVIVVHAENETIIQALQKQIKAAGGK----DMAAYEASQPVFQE--------N 164
Query: 179 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238
A E IV ++L+ +A++ G + E+ P YL + ++
Sbjct: 165 EAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERI 224
Query: 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
K APP+R A +LWE L +G ID L SDH E K + KA G L
Sbjct: 225 GPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGL 284
Query: 299 QFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG 332
+ LP+ + G G ++LE+L E+PAKL G
Sbjct: 285 ETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFG 319
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Score = 101 bits (253), Expect = 8e-25
Identities = 32/329 (9%), Positives = 73/329 (22%), Gaps = 40/329 (12%)
Query: 6 DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 65
D H HL D + I MP N P + E +
Sbjct: 11 DWHLHLRD------GDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAV 63
Query: 66 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 125
F + ++ L G+ + N ++
Sbjct: 64 PAGHDFTPLMTCYL-TDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVT-------- 114
Query: 126 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 185
+ +E + + + T
Sbjct: 115 ---SVDAIMPVLE---RMEKIGMPLLVHGEVTHADIDIFDREARFIESVMEPLRQRLT-- 166
Query: 186 DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE--EIPDGDTRFK 243
+ H++ ++ + + + P +L F+ +
Sbjct: 167 -----ALKVVFEHITTKDAA----DYVRDGNERLAATITPQHLMFNRNHMLVGGVRPHLY 217
Query: 244 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 303
C P ++ +++ L E + G + S + + ++L
Sbjct: 218 CLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYAT 277
Query: 304 VTWSYGRKYGVTLEQLASWWSERPAKLAG 332
V L+ ++ S + G
Sbjct: 278 VFEEMN-----ALQHFEAFCSVNGPQFYG 301
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Score = 89.0 bits (219), Expect = 3e-20
Identities = 49/350 (14%), Positives = 93/350 (26%), Gaps = 48/350 (13%)
Query: 3 GLIDVHAHLDDPGRTEWEGFP--------------SGTKAAAAGGITTLIDMPLNSDPST 48
G H H+ +P G + A A G+ T++D+ ++
Sbjct: 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDV--STFDIG 73
Query: 49 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 108
L AA+ I G W ++E L + ++ + +GI
Sbjct: 74 RDVSLLAEVSRAADVHIVAATGLWFDPPLS--MRLRSVEELTQFFLREIQYGIEDTGIRA 131
Query: 109 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 168
+ + + L A + V
Sbjct: 132 GII----KVATTGKATPFQELVLKAAARASLATGVPVTT--------------------H 167
Query: 169 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 228
A+ R+ A ++G + SD + L L G I ++ PH
Sbjct: 168 TAASQRDGEQQAAIFESEGL--SPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSA 225
Query: 229 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 288
+ + R K + + M ++S+D
Sbjct: 226 IGLEDNASASALLGIRSWQTRALLIKALIDQGYMKQ--ILVSNDWLFGFSSYV--TNIMD 281
Query: 289 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGA 338
+ + F+ + R+ GV E LA PA+ + +
Sbjct: 282 VMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLSPTLRAS 331
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Score = 84.8 bits (208), Expect = 4e-19
Identities = 37/338 (10%), Positives = 78/338 (23%), Gaps = 57/338 (16%)
Query: 3 GLIDVHAHLDDPGRTE---WEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVD 59
G ID H HL G G+T+++ + +D + E+L K
Sbjct: 1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTR 59
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
A + G + +
Sbjct: 60 ALNEEGISAWMLTGAYHVPSRTITG----------------SVEKDVAIIDRVIGVKCAI 103
Query: 120 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTV 179
A L + E + + + A++ + +
Sbjct: 104 SDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSK----------KALQPIYDL 153
Query: 180 AKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 239
++ + + + + V L F+ + D
Sbjct: 154 LENC-------DVPISKLLPT---------------HVNRNVPLFEQALEFARKGGTI-D 190
Query: 240 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQ 299
P+ A + +A + LSSD + + P G++ +
Sbjct: 191 ITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFD----DEGNLTHIGVAGFE 246
Query: 300 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG 337
+L + Y ++ + A KG
Sbjct: 247 TLLETVQVLVKDYDFSISDALRPLTSSVAGFLNLTGKG 284
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 112 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 53.1 bits (127), Expect = 2e-09
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 296 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 355
+L+ + G+ +++ G + + +G+ AD+ +++P E
Sbjct: 16 QNLEGEFDILVENGKI--KKIDKNILVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKE 73
Query: 356 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
+ L+ + K + G+ L GKV+ TI G +VYK+
Sbjct: 74 WILNEET-NLSKS-RNTPLWGKVLKGKVIYTIKDGKMVYKD 112
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.8 bits (111), Expect = 4e-07
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395
IA+G+ AD+V+W+P+ + + + G G L IS+G +V++
Sbjct: 50 MVIIAVGSDADVVIWDPDKMKTITAKSH-KSTVEY-NIFEGMECHGSPLVVISQGKIVFE 107
Query: 396 EGN 398
+GN
Sbjct: 108 DGN 110
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 44.2 bits (104), Expect = 3e-06
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 337 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
IA+G+ AD+V+W+PEAE ++ S+Y G ++ G + RG ++ E
Sbjct: 50 FPIAVGSDADIVLWDPEAEMVIEQTA--MHNAMDYSSYEGHKVKGVPKTVLLRGKVIVDE 107
Query: 397 GN 398
G+
Sbjct: 108 GS 109
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 43.9 bits (103), Expect = 3e-06
Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 317 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 376
+ + R G+ + +G+ ADL++ + + + ++D + S + G
Sbjct: 34 ADTSDVEASRTIDAGGKFVMPTLQVGSDADLLILDLDIDTKVDASQFRSLHK--YSPFDG 91
Query: 377 RRLSGKVLATISRGNLVYKEGN 398
++G + T+ RG +V ++G
Sbjct: 92 MPVTGAPVLTMVRGTVVAEKGE 113
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Score = 42.6 bits (100), Expect = 8e-06
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 314 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 373
T++++ + L+G++ I G +ADLVV + + + +
Sbjct: 26 GTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADLVVIDLDLPEMFPVQNIKNH------- 78
Query: 374 YLGRRLSGKVLATISRGNLVYKEGNH 399
L SG+V AT+ G +Y +G +
Sbjct: 79 -LVHAFSGEVFATMVAGKWIYFDGEY 103
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 62
G +D H H T F + + G+TT + S E L+ D
Sbjct: 1 GFVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLAT-TVSTSLEKMKEILRKARDYIL 59
Query: 63 K 63
+
Sbjct: 60 E 60
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 40.7 bits (95), Expect = 4e-05
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 345 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
ADLVV++P+ + + + + G + G+ RG + ++G
Sbjct: 54 ADLVVYDPQYRGTISVKT--QHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQ 105
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Score = 42.6 bits (98), Expect = 5e-05
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 62
G ID H H + ++ + G+TT+ID T E + D A+
Sbjct: 1 GWIDDHVHCFEKMALYYDYPD---EIGVKKGVTTVIDAG------TTGAENIHEFYDLAQ 51
Query: 63 KRIYVDVGFWGGLVP 77
+ G
Sbjct: 52 QAKTNVFGLVNISKW 66
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 41.1 bits (96), Expect = 5e-05
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 335 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394
I +G D+V+W+P + D H + + G +++G + TI GN+V+
Sbjct: 50 KLLLIDVGCDGDIVIWDPNQSKTISKDT--HHHAVDFNIFEGIKVTGIAVTTIVAGNIVW 107
Query: 395 KEGN 398
+
Sbjct: 108 SDNK 111
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} Length = 181 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Score = 41.0 bits (96), Expect = 8e-05
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTE 52
G I+V D F GG+ + M + + S + +
Sbjct: 126 TAGSIEVGKLADLV-VWSPAFFGVKPATVIKGGMIAIAPMG-DINASIPTPQ 175
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 39.3 bits (91), Expect = 1e-04
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395
I +G+ ADLV+++P E + + +A+ G +++G+ ++ + RG V +
Sbjct: 50 VFPIVVGSDADLVIFDPNIERVISAETHHMAVD--YNAFEGMKVTGEPVSVLCRGEFVVR 107
Query: 396 EGN 398
+
Sbjct: 108 DKQ 110
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 38.4 bits (89), Expect = 2e-04
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 338 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
IA+G+ AD+V+++P + L + + + G + G+V++ +SRG+ V ++
Sbjct: 51 PIAVGSDADIVIFDPHVKRTLSVETHHMNVD--YNPFEGMEVYGEVVSVLSRGSFVVRDK 108
Query: 398 N 398
Sbjct: 109 Q 109
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 61 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 36.7 bits (85), Expect = 3e-04
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 339 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
+ G +ADLVV++P S + + + + G V+++ +
Sbjct: 2 VQPGYYADLVVFDPA------------TVADSATFEHPTERAAGIHSVYVNGAAVWEDQS 49
Query: 399 HAPAACGSPI 408
G +
Sbjct: 50 FTGQHAGRVL 59
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Score = 37.8 bits (88), Expect = 0.002
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 32/143 (22%)
Query: 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET--------L 54
G ID H H +P + + A A GITTL P+ S T +
Sbjct: 1 GGIDTHVHFINPDQVD---------VALANGITTLFGGGTG--PAEGSKATTVTPGPWNI 49
Query: 55 KLKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTN 113
+ + + E + ++VG G G + + + + ++AG GLK I++
Sbjct: 50 EKMLKSTE-GLPINVGILGKG----HGSSIAPIMEQIDAGAAGLK-------IHEDWGAT 97
Query: 114 ASHIKEGLSVLARYKRPLLVHAE 136
+ I L+V + +H++
Sbjct: 98 PASIDRSLTVADEADVQVAIHSD 120
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 411 | |||
| d1gkpa2 | 335 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 100.0 | |
| d1nfga2 | 330 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 100.0 | |
| d1kcxa2 | 334 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 100.0 | |
| d2ftwa2 | 334 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 100.0 | |
| d1ynya2 | 332 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 100.0 | |
| d1gkra2 | 325 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d1xrta2 | 310 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 100.0 | |
| d2eg6a1 | 343 | Dihydroorotase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1i0da_ | 331 | Phosphotriesterase (parathion hydrolase, PTE) {Pse | 99.83 | |
| d1onwa2 | 284 | Isoaspartyl dipeptidase, catalytic domain {Escheri | 99.73 | |
| d1ra0a2 | 320 | Cytosine deaminase catalytic domain {Escherichia c | 99.71 | |
| d2uz9a2 | 313 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 99.66 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 99.64 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 99.62 | |
| d2paja2 | 336 | Hypothetical protein GOS_1943094 {Environmental sa | 99.57 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.55 | |
| d2i9ua2 | 310 | Guanine deaminase {Clostridium acetobutylicum [Tax | 99.55 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 99.53 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.52 | |
| d2icsa2 | 267 | Putative adenine deaminase EF0837 {Enterococcus fa | 99.51 | |
| d1p1ma2 | 281 | Hypothetical protein TM0936, probable catalytic do | 99.51 | |
| d2puza2 | 301 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 99.47 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.46 | |
| d2vhla2 | 301 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.46 | |
| d2bb0a2 | 300 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.46 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.44 | |
| d2q09a2 | 301 | Probable 4-imidazolone-5-propanoate amidohydrolase | 99.43 | |
| d2imra2 | 308 | Hypothetical protein DR0824 {Deinococcus radiodura | 99.42 | |
| d2qs8a2 | 310 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.35 | |
| d2r8ca2 | 311 | Uncharacterized protein EAJ56179 {Unidentified org | 99.34 | |
| d2p9ba2 | 324 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.33 | |
| d3be7a2 | 303 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.33 | |
| d1m7ja2 | 61 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.3 | |
| d2ooda2 | 325 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 99.25 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 99.2 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.2 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 99.2 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.18 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.16 | |
| d1p1ma1 | 123 | Hypothetical protein TM0936 {Thermotoga maritima [ | 99.13 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.12 | |
| d1yrra2 | 297 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.1 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 99.09 | |
| d2paja1 | 139 | Hypothetical protein GOS_1943094 {Environmental sa | 99.05 | |
| d2bb0a1 | 113 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.03 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 98.87 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 98.77 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 98.59 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 98.44 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 98.39 | |
| d2i9ua1 | 109 | Guanine deaminase {Clostridium acetobutylicum [Tax | 98.38 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 98.01 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 97.92 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 97.58 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.55 | |
| d2f6ka1 | 306 | Putative amidohydrolase LP2961 {Lactobacillus plan | 97.43 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 96.86 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 96.6 | |
| d1a4ma_ | 349 | Adenosine deaminase (ADA) {Mouse (Mus musculus) [T | 96.6 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 95.81 | |
| d2ffia1 | 271 | Putative 2-pyrone-4,6-dicarboxylic acid hydrolase | 95.65 | |
| d2uz9a1 | 131 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 95.58 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 94.3 | |
| d2hbva1 | 331 | 2-amino-3-carboxymuconate 6-semialdehyde decarboxy | 93.79 | |
| d1onwa1 | 105 | Isoaspartyl dipeptidase {Escherichia coli [TaxId: | 93.64 | |
| d2p9ba1 | 118 | Uncharacterized protein BL1453 {Bifidobacterium lo | 93.24 | |
| d1yrra1 | 85 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 91.99 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 82.2 |
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=100.00 E-value=3.6e-53 Score=395.15 Aligned_cols=328 Identities=26% Similarity=0.340 Sum_probs=286.1
Q ss_pred eeecccccCCCCC--CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCcc
Q 015182 4 LIDVHAHLDDPGR--TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY 81 (411)
Q Consensus 4 lID~H~H~~~~~~--~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
|||+|||+++|+. ..+|++++++++|++||||||+||| |+.|..++.+.++.+++.++..+.+++.++.+++..+..
T Consensus 1 lID~HvH~~~p~~~~~~ked~~sgs~AAa~GGvTtv~dmp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~ 79 (335)
T d1gkpa2 1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMC-CPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEK 79 (335)
T ss_dssp EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-CCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTT
T ss_pred CcCcccccCCCCCCCccccHHHHHHHHHHhCCCeEEEECC-CCCCCCChHHHHHHHHHHHhcCCccceeeEEEEeccccc
Confidence 8999999999854 4689999999999999999999999 888877888899988888888889999999888766666
Q ss_pred chHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccccc
Q 015182 82 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 161 (411)
Q Consensus 82 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (411)
.+.++.++.+.|+.++|+|+.+. +.+..++..+.+++++++..|..+.+|+++............ ..+..+...+.
T Consensus 80 ~~~el~~l~~~G~~~~k~~~~~~---~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~-~~~~~~~~~~~ 155 (335)
T d1gkpa2 80 TEGQLREIVADGISSFKIFLSYK---NFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLL-SEGKTGPEWHE 155 (335)
T ss_dssp HHHHHHHHHHTTCCEEEEEECST---TTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHH-HTTCCSGGGTT
T ss_pred cHHHHHHHHhhhccccccccccC---CCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhh-cccccCccccc
Confidence 67788888889999999999765 345679999999999999999999999998765432111110 22344556677
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCC--
Q 015182 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD-- 239 (411)
Q Consensus 162 ~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~-- 239 (411)
..||..+|..++.+++.+++++ +.++|++|+++. +++++|+.+|++|..++|+++|+|++++.+++...+
T Consensus 156 ~~~p~~~E~~av~r~~~la~~~-------~~~~hi~HiSt~-~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~~ 227 (335)
T d1gkpa2 156 PSRPEAVEAEGTARFATFLETT-------GATGYVVHLSCK-PALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVE 227 (335)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH-------TCEEEECSCCSH-HHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHh-------Ccccchhhhhhh-hhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCch
Confidence 8999999999999999999887 899999999999 899999999999999999999999999887766543
Q ss_pred -cceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhc-CCCHH
Q 015182 240 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKY-GVTLE 317 (411)
Q Consensus 240 -~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~ 317 (411)
...+++||+|+..++++||+++.+|.+++|+|||+|++..+|..+.++|+.+|.|++|+++.++.+++..++. ++|++
T Consensus 228 ~~~~k~~PPlRs~~d~~~L~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~g~lsl~ 307 (335)
T d1gkpa2 228 AMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIH 307 (335)
T ss_dssp HHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHH
T ss_pred hcceecccCCCCHHHHHHHHHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHcCCCCHH
Confidence 3567999999999999999999999999999999999999997767789999999999999999999876555 59999
Q ss_pred HHHHHHhHhHHHHhCC-CCCCcccccCC
Q 015182 318 QLASWWSERPAKLAGQ-VSKGAIAIGNH 344 (411)
Q Consensus 318 ~al~~~T~n~A~~lg~-~~~G~I~~G~~ 344 (411)
++++++|.||||+||+ ++||+|++|++
T Consensus 308 ~~v~~~S~nPAri~Gl~~~KG~i~~G~D 335 (335)
T d1gkpa2 308 RFVDAASTKAAKLFGLFPRKGTIAVGSD 335 (335)
T ss_dssp HHHHHHTHHHHHHTTCTTTSSSCCTTSB
T ss_pred HHHHHHHHHHHHHhCCCCCCCeecCCCC
Confidence 9999999999999999 88999999986
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=100.00 E-value=2.8e-53 Score=394.28 Aligned_cols=320 Identities=26% Similarity=0.364 Sum_probs=277.7
Q ss_pred ceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 3 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 3 GlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
|+||+|||+++| +..++|++.+++++|++||||||+||| |+.|+.++.+.++.+.+.++.++.+++.++..++....
T Consensus 1 G~ID~HvH~r~p~~g~~~~Ed~~tgs~AAa~GGvTtv~~mp-n~~p~~~~~e~~~~~~~~a~~~s~~d~~~~~~~~~~~~ 79 (330)
T d1nfga2 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFC-QQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTD 79 (330)
T ss_dssp CEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-ECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCH
T ss_pred CcEeCccCCCCCCCCccccchHHHHHHHHHcCCCEEEEECC-CCCCCCCCHHHHHHHHHHHhcCCeeeecceEEEeccch
Confidence 899999999998 446889999999999999999999999 88898888899999888888888999999877655444
Q ss_pred cchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccch---hhhhhccCcCCcccc
Q 015182 81 YNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSE---RHVKLEDDTLDTRSY 157 (411)
Q Consensus 81 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~---~~~~~~~~~~~~~~~ 157 (411)
..++++..+.+.|+.++|+|+.+.+ ....+...+.++++++.+.|..+.+||++...+. ..+.. .+..+.
T Consensus 80 ~~~~el~~~~~~Gv~~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~~----~g~~~~ 152 (330)
T d1nfga2 80 SVIEELEVLPDLGITSFKVFMAYRG---MNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVA----EGKTAP 152 (330)
T ss_dssp HHHHHTTTGGGGTCCEEEEESSSTT---TTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHH----TTCCST
T ss_pred hhHHHHhhhhhhcccceeeeccccc---cCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhhc----cCCcCc
Confidence 4455666667789999999998753 2357889999999999999999999999976654 22332 234455
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
..+..+||..+|..++.+++.+++.+ +.++|++|+|+. +++++|+++|++|.+|+|++|||||+++.+++..
T Consensus 153 ~~~~~~rp~~aE~~av~r~~~la~~~-------~~~lhi~HiSt~-~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~ 224 (330)
T d1nfga2 153 IYHALSRPPRVEAEATARALALAEIV-------NAPIYIVHVTCE-ESLEEVMRAKSRGVRALAETCTHYLYLTKEDLER 224 (330)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECCCCSH-HHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGC
T ss_pred hhcccccChHHHHHHHHHHHHHHHHh-------CCeeeechhcch-HHHHHHHHHHhcCCcccccccchhhhhhhhhhhc
Confidence 56778999999999999999999987 899999999999 9999999999999999999999999999987765
Q ss_pred C---CcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhh-hhcccCCccccCCCCchhhhHHHHHHHHHHhcC
Q 015182 238 G---DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPEL-KLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 313 (411)
Q Consensus 238 ~---~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~-k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 313 (411)
+ +.+.+++||+|+..++++||+++.+|.+++|+|||+|++... +....++|+.+|.|++|+++.++.+++.+.+.+
T Consensus 225 ~~~~~~~~k~~PPLR~~~d~~aL~~~l~dG~Id~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~~~v~~~~ 304 (330)
T d1nfga2 225 PDFEGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGR 304 (330)
T ss_dssp TTTGGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHHHHHHTTS
T ss_pred ccccCceeeecCcCCcHHHHHHHhhhhcCCceeeecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHHHHHHcCC
Confidence 3 567899999999999999999999999999999999997532 233356899999999999999999998777778
Q ss_pred CCHHHHHHHHhHhHHHHhCC-CCCCc
Q 015182 314 VTLEQLASWWSERPAKLAGQ-VSKGA 338 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~-~~~G~ 338 (411)
++++++++++|.||||+||+ ++||+
T Consensus 305 l~l~~~v~~~S~nPAki~gL~p~KGt 330 (330)
T d1nfga2 305 ISLTQFVELVATRPAKVFGMFPQKGT 330 (330)
T ss_dssp SCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999 88996
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-52 Score=390.66 Aligned_cols=324 Identities=23% Similarity=0.281 Sum_probs=277.2
Q ss_pred CceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC
Q 015182 2 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 79 (411)
Q Consensus 2 PGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (411)
||+||+|||+++| |++++|++.+++++|++||||||+||| |+.|..++.+.++.+.+.++.++.+++.++++++..+
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~s~~d~~~~~~~~~~~ 79 (334)
T d1kcxa2 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHV-VPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSWY 79 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHHHHCSSEEEEEEEECCCC
T ss_pred CCeEeeeecCCCCCCCCcccchHHHHHHHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHhcccCcceeeEeeeeccCC
Confidence 9999999999999 889999999999999999999999999 8999888889999888888778899999998887665
Q ss_pred ccchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 80 AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 80 ~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
.+.+.++..+.+ .|+.++|+|+.+.+ .+..+++.+.++++++++.+.++.+||++........... .+.+..+..
T Consensus 80 ~~~~~el~~l~~~~g~~~~ki~~~~~~---~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~-~~~g~~~~~ 155 (334)
T d1kcxa2 80 DGVREELEVLVQDKGVNSFQVYMAYKD---LYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRI-LEMGITGPE 155 (334)
T ss_dssp TTHHHHHHHHHHTTCCCEEEEESCSTT---TTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHH-HHTTCCSTH
T ss_pred cchHHHHHHHHHhccCceeeeeeccCC---CcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccch-hhcCCcchh
Confidence 555667777665 58999999998753 3567899999999999999999999999987644321100 022345556
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCC
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~ 238 (411)
.+...||..+|..++.+++++++.+ +.++|++|+|+. +++++|+.+|++|..++++++|++++++...+...
T Consensus 156 ~~~~~rp~~aE~~ai~r~~~la~~~-------g~~~hi~HiSt~-~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~ 227 (334)
T d1kcxa2 156 GHALSRPEELEAEAVFRAIAIAGRI-------NCPVYITKVMSK-SAADIIALARKKGPLVFGEPIAASLGTDGTHYWSK 227 (334)
T ss_dssp HHHHHSCTHHHHHHHHHHHHHHHHH-------TCCEEEEEECCH-HHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCS
T ss_pred hccCCCCHHHHHHHHHHHHHHHhhc-------CCceeeccccch-HHHHHHHHHhccccceeeccchhheeecccccccC
Confidence 6778999999999999999999987 999999999999 99999999999999999999999999887665432
Q ss_pred C----cceEEcCCCC-ChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hc
Q 015182 239 D----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KY 312 (411)
Q Consensus 239 ~----~~~~~~p~lr-~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 312 (411)
+ ...+++||+| +..++++||+++.+|.+++|+|||+|++..+|..+.++|+.+|.|++|+++.++.+|+..+ ++
T Consensus 228 ~~~~~~~~~~~pPlr~~~~d~eaL~~~l~~G~Id~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~l~~llt~~V~~g 307 (334)
T d1kcxa2 228 NWAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATG 307 (334)
T ss_dssp SHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTT
T ss_pred ChhHhcceEeeeccCchhhhHHHHHHHhhcCCcceEecCCCCCCHHHhccCCCChhhCCCCcccHHHHHHHHHHHHHHcC
Confidence 2 2344556665 6778999999999999999999999999999987667899999999999999999997654 45
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCc
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGA 338 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~ 338 (411)
++|++++++++|.|||++||+ ++||+
T Consensus 308 ~isl~~~v~~~s~nPA~i~gL~p~KGr 334 (334)
T d1kcxa2 308 KMDENQFVAVTSTNAAKIFNLYPRKGR 334 (334)
T ss_dssp SSCHHHHHHHHTHHHHHHHTCTTTSSC
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 599999999999999999999 78885
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=100.00 E-value=2.1e-52 Score=388.71 Aligned_cols=324 Identities=22% Similarity=0.267 Sum_probs=278.6
Q ss_pred CceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC
Q 015182 2 PGLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 79 (411)
Q Consensus 2 PGlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (411)
||+||+|||+++| |.+++|++.+++++|++||||||+||| |+.|..++.+.++.+.+.++..+.+++.++.+.+..+
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mp-n~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~ 79 (334)
T d2ftwa2 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFV-IPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWS 79 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEE-CCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCC
T ss_pred CCeEcceecCCCCCCCCcccccHHHHHHHHHhCCCeEEEECC-CCCCCCCcHHHHHHHHHHHhcCCcceeeEEEeecCcc
Confidence 9999999999998 888999999999999999999999999 8888888888999888888888899999998877655
Q ss_pred ccchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccc
Q 015182 80 AYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYS 158 (411)
Q Consensus 80 ~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~ 158 (411)
...+.++..+.+ .|+.++|+|+.+.. + ...+++.+.++++++++.|.++.+|+++...........- ..+..+..
T Consensus 80 ~~~~~e~~~l~~~~g~~~~k~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~-~~g~~~~~ 155 (334)
T d2ftwa2 80 EQVSREMEILVKERGVNSFKCFMAYKN--S-FMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKML-EMGITGPE 155 (334)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEESSCTT--T-TBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHH-HTTCCSTH
T ss_pred hhhhHhHHHHHHhcCccccceeecccc--c-cccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhhh-ccCCCCcc
Confidence 555566666654 69999999987653 2 3568889999999999999999999999876554421110 22344555
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCC
Q 015182 159 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 238 (411)
Q Consensus 159 ~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~ 238 (411)
.+..+||+.+|..++.+++.+++.+ +.++|++|+|+. +++++|+.+|++|.+|+++++||||+++.+.+...
T Consensus 156 ~~~~~rp~~aE~~~v~r~~~la~~~-------~~~lhi~HiSt~-~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~ 227 (334)
T d2ftwa2 156 GHELSRPEALEAEATNRAIVIADSV-------CTPVYIVHVQSI-GAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNH 227 (334)
T ss_dssp HHHHHSCTHHHHHHHHHHHHHHHHH-------TCCEEECSCCCH-HHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCS
T ss_pred cccccCcHHHHHHHHHHHHHHHHhh-------ccceeeccccch-hhhhhHHHhcccCCceeeccccceeeccHHHHhcc
Confidence 6778899999999999999999987 899999999999 99999999999999999999999999998876543
Q ss_pred ----CcceEEcCCCCCh-hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hc
Q 015182 239 ----DTRFKCAPPIRDA-ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KY 312 (411)
Q Consensus 239 ----~~~~~~~p~lr~~-~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 312 (411)
+...+++||+|.. .++.+||+++.+|.+++|+|||+|++..+|..+.++|+.+|.|++|+++.++.+|+..+ ++
T Consensus 228 d~~~~~~~~~~PPlR~~~~d~~~L~~~l~~G~Id~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll~~~~v~~g 307 (334)
T d2ftwa2 228 DWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTG 307 (334)
T ss_dssp SHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTT
T ss_pred chhhccceEeeccccccHhhhhhHHHHhhCCCccceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHHHHHHHHcC
Confidence 2456789999965 57899999999999999999999999999987667899999999999999999997554 45
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCc
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGA 338 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~ 338 (411)
++|++++++++|.||||+||+ ++||+
T Consensus 308 ~lsl~~~v~~~s~nPAki~gL~p~KGr 334 (334)
T d2ftwa2 308 KLTWCQFVRATSSERARIFNIYPRKGR 334 (334)
T ss_dssp SSCHHHHHHHHTHHHHHHTTCTTTSSC
T ss_pred CCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 599999999999999999999 88985
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=100.00 E-value=1.1e-51 Score=384.44 Aligned_cols=320 Identities=28% Similarity=0.391 Sum_probs=276.7
Q ss_pred ceeecccccCCC--CCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCc
Q 015182 3 GLIDVHAHLDDP--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENA 80 (411)
Q Consensus 3 GlID~H~H~~~~--~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (411)
|+||+|||+++| |.+++|++++++++|++||||||+||| |+.|+.++.+.++.+.++++..+.+++.++..++..+.
T Consensus 1 G~ID~HvH~r~p~~g~~~~ed~~tgs~AAa~GGvTtv~~mp-nt~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~ 79 (332)
T d1ynya2 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFC-LTKKGESLKSAIATWHEKARGKAVIDYGFHLMIAEAND 79 (332)
T ss_dssp CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEE-CCCSSCCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCH
T ss_pred CceeCccCCCCCCCCCcccccHHHHHHHHHhCCCcEEEECC-CCCCCCCCHHHHHHHHHHHhccCccceeeEEEEecccc
Confidence 899999999998 788999999999999999999999999 88999898999999988888888999999987766554
Q ss_pred cchHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchh---hhhhccCcCCccc
Q 015182 81 YNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER---HVKLEDDTLDTRS 156 (411)
Q Consensus 81 ~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~---~~~~~~~~~~~~~ 156 (411)
....++..+.. .|+.++|+|+.+.. ....+.+.+.++++++++.|+++.+|+++...+.. .++. .+..+
T Consensus 80 ~~~~el~~~~~~~g~~~~k~~~~~~~---~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~~----~g~~~ 152 (332)
T d1ynya2 80 QVLEELESVISSEGITSLKVFMAYKN---VFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALA----EGNTD 152 (332)
T ss_dssp HHHHHHHHHHHTSCCCEEEEESCSTT---TTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHH----TTCCS
T ss_pred chhHHHHHHHhhhcccceeeeecccc---ccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHHh----cCCCC
Confidence 44556666654 68999999987652 23568899999999999999999999998765432 2222 22345
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
...+...||..+|..++.+++.+++++ +.++|++|+++. +++++|+.+|++|.+|+|++|||||+++.+.+.
T Consensus 153 ~~~~~~~~p~~aE~~ai~r~~~la~~~-------g~~~hi~hiSt~-~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~ 224 (332)
T d1ynya2 153 PIYHAYTRPPEAEGEATGRAIALTALA-------GSQLYVVHVSCA-SAVQRIAEAREKGWNVYGETCPQYLALDVSIMD 224 (332)
T ss_dssp TTHHHHTSCHHHHHHHHHHHHHHHHHH-------TCCEEECSCCSH-HHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGC
T ss_pred chhccccchhhHHHHHHHHHHHhhhhh-------cccccccccccc-hHHHHHHHHHHhCCCceeccccccccCCHHHHh
Confidence 556778999999999999999999987 899999999999 999999999999999999999999999988776
Q ss_pred CC---CcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhh-hcccCCccccCCCCchhhhHHHHHHHHH-Hh
Q 015182 237 DG---DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK-LLDEGNFLKAWGGISSLQFVLPVTWSYG-RK 311 (411)
Q Consensus 237 ~~---~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k-~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 311 (411)
.. +.+.+++||+|+..++++||+++.+|.+++|+|||+|++...| .....+|+.+|.|++++++.++.+++.. .+
T Consensus 225 ~~~~~g~~~k~~PPLRs~~dr~aL~~al~~G~id~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~l~~~~~~~v~~ 304 (332)
T d1ynya2 225 QPDFEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQ 304 (332)
T ss_dssp CSSSGGGGGCCSSCCCCTTHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTT
T ss_pred hhhccCceeEecCccccHHHHHHHHHHHhcCCeeEEEecCCCCCHHHHhhccCCCcccCCCccchHHHHHHHHHHHHHHc
Confidence 53 5778999999999999999999999999999999999986554 3345689999999999999999998754 45
Q ss_pred cCCCHHHHHHHHhHhHHHHhCC-CCCCc
Q 015182 312 YGVTLEQLASWWSERPAKLAGQ-VSKGA 338 (411)
Q Consensus 312 ~~l~~~~al~~~T~n~A~~lg~-~~~G~ 338 (411)
+++|++++++++|.||||+||+ ++||+
T Consensus 305 g~lsl~~~v~~~s~nPAki~GL~p~KGt 332 (332)
T d1ynya2 305 GRISLNQFVDISSTKAAKLFGMFPRKGT 332 (332)
T ss_dssp TSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CCCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 5699999999999999999999 88996
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=8.3e-52 Score=384.74 Aligned_cols=322 Identities=31% Similarity=0.456 Sum_probs=278.6
Q ss_pred ceeecccccCCCCCCccC-ChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCCcc
Q 015182 3 GLIDVHAHLDDPGRTEWE-GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY 81 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~-~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (411)
|+||+|||+++|+.+.++ ++.+++++|++||||||++|| |+.|+.++.+.+..+.+.+..++.+++.++.+.+..
T Consensus 1 G~ID~HvH~repg~~~ke~~~~tgs~AAa~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~--- 76 (325)
T d1gkra2 1 GVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPG--- 76 (325)
T ss_dssp CEEEEEEECCCGGGTTTSCCHHHHHHHHHHHTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEEEEECCTT---
T ss_pred CcEeCCcCCCCCCCCCcccHHHHHHHHHHccCCceEEECC-CCCCCcCCHHHHHHHHHHhccCCccccccccccccc---
Confidence 899999999999988886 699999999999999999999 999998999999988887777788999999876543
Q ss_pred chHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccccc
Q 015182 82 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 161 (411)
Q Consensus 82 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (411)
....+..+...|+.++|.++.+.........++..+.++++++++.|..+.+|+++...+....... ...+..+...+.
T Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~-~~~g~~~~~~~~ 155 (325)
T d1gkra2 77 NLPEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQI-KAAGGKDMAAYE 155 (325)
T ss_dssp CHHHHHHHHHTTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHH-HHTTCCSHHHHH
T ss_pred cHHHHHhhhhcccceeccccccccCCccccccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHh-hhcCCccccccc
Confidence 3445666677899999998876543344456788999999999999999999999977643211110 022344555667
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcc
Q 015182 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 241 (411)
Q Consensus 162 ~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~ 241 (411)
..||..+|..++.+.+.+++.+ +.++|++|+++. +.+++++.+|++|.+++|++||||++++.+++..+++.
T Consensus 156 ~~rp~~aE~~~v~r~~~la~~~-------~~~~hi~hiSs~-~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~~~~~ 227 (325)
T d1gkra2 156 ASQPVFQENEAIQRALLLQKEA-------GCRLIVLHVSNP-DGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPY 227 (325)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHH-------CCEEEECCCCSH-HHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHHHGGG
T ss_pred ccCchHHHHHHHHHHHHHhhhc-------CcceeccccccH-HHHHhhhhhhhcCCceEEeecccccccchhhhhccCcc
Confidence 8899999999999999999987 999999999999 99999999999999999999999999998887777888
Q ss_pred eEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh-cCCCHHHHH
Q 015182 242 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLA 320 (411)
Q Consensus 242 ~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~~al 320 (411)
.+++||+|+.+++++||+++.+|.+++|+|||+|++..+|..+.++|+.+|.|++|+++.++.+|+..+. .++++++++
T Consensus 228 ~k~~PPlR~~~Dr~aL~~al~~G~id~i~SDHaPh~~~~K~~~~~~~~~a~~G~~g~e~~lp~~~~~~v~~g~lsl~~~v 307 (325)
T d1gkra2 228 MKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLV 307 (325)
T ss_dssp GCCSSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHH
T ss_pred cccchhhhhhhhhHHHHHHHhcCcceEEecCCCCCCHHHhccCCCccccCCCCcccHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999877778999999999999999999976554 459999999
Q ss_pred HHHhHhHHHHhCC-CCCC
Q 015182 321 SWWSERPAKLAGQ-VSKG 337 (411)
Q Consensus 321 ~~~T~n~A~~lg~-~~~G 337 (411)
+++|.||||+||+ ++||
T Consensus 308 ~~~s~nPAki~gl~p~KG 325 (325)
T d1gkra2 308 EVMCEKPAKLFGIYPQKG 325 (325)
T ss_dssp HHHTHHHHHHHTCTTTSS
T ss_pred HHHhHHHHHHhCCCCCCC
Confidence 9999999999999 7887
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=1.7e-50 Score=381.11 Aligned_cols=319 Identities=24% Similarity=0.350 Sum_probs=261.0
Q ss_pred ceeecccccCCCCC---CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHH-----HHHHhcCCceEEEEEee
Q 015182 3 GLIDVHAHLDDPGR---TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK-----VDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 3 GlID~H~H~~~~~~---~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 74 (411)
|+||+|||+++|+. +++|++.+++++|++||||||+||| ++.|+.+....+... .+.++.++.++|+++..
T Consensus 1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp-~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~ 79 (384)
T d2fvka2 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFS-TQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLI 79 (384)
T ss_dssp CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEE-ECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEE
T ss_pred CceeCCcCCCCCCCCCCcccchHHHHHHHHHcCCceEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHhcCccceeeEEEE
Confidence 89999999999976 7889999999999999999999999 777765544443322 23345678999999876
Q ss_pred ecCCCcc-----chHHH---HHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhh--
Q 015182 75 LVPENAY-----NASAL---EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH-- 144 (411)
Q Consensus 75 ~~~~~~~-----~~~~~---~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~-- 144 (411)
.+..... ++.++ ..+...|+.++|+|+.+.. ...+.+.+.++++++++.|.++.+||++...+...
T Consensus 80 ~~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~----~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~ 155 (384)
T d2fvka2 80 LFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG----LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIE 155 (384)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTT----TBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHH
T ss_pred EeCCCCccchHHHHHhHHHHHHcccCcccccceeccccc----cccCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHH
Confidence 5543221 11122 2234579999999997653 35688899999999999999999999998765422
Q ss_pred -hhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEc
Q 015182 145 -VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVET 223 (411)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~ 223 (411)
+.. .+..+...+..+||..+|..++.+++.+++++ +.++||+|+|+. +++++|+++|++|++|+|++
T Consensus 156 ~~~~----~g~~~~~~~~~~rP~~aE~~av~r~~~la~~~-------g~~lhi~HiSt~-~~ve~I~~ak~~G~~Vt~Et 223 (384)
T d2fvka2 156 ALEE----QGLTDAYYHGVSRPSIVEGEATNRAITLATTM-------DTPILFVHVSSP-QAAEVIKQAQTKGLKVYAET 223 (384)
T ss_dssp HHHH----TTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHT-------TCCEEECSCCCH-HHHHHHHHHHHHTCCEEEEE
T ss_pred HHhh----cCCCChhhcccccccchhhHHHHHHHHHHHhc-------CceEEecccccc-hhhHHHHHhhhcCCCEEEEe
Confidence 222 23455667788999999999999999999977 899999999999 99999999999999999999
Q ss_pred cccccccccccc------------------------------CCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCC
Q 015182 224 CPHYLAFSAEEI------------------------------PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH 273 (411)
Q Consensus 224 ~p~~l~~~~~~~------------------------------~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~ 273 (411)
|||||+++++.+ ...+...+++||||+..++++||++|.+|.+++|+|||
T Consensus 224 ~ph~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDH 303 (384)
T d2fvka2 224 CPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDH 303 (384)
T ss_dssp CHHHHHCCGGGGSCC--------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCB
T ss_pred ChHHhhccchhhcccccccccccccccccccccccccccccccccCceeEEcCCCCCHHHHHHHHHHhhCCceeEEecCC
Confidence 999999887643 22356789999999999999999999999999999999
Q ss_pred CCCChhhhhcc-------------cCCccccCCCCchhhhHHHHHHHHHH-hcC-CCHHHHHHHHhHhHHHHhCC-CCCC
Q 015182 274 SPTVPELKLLD-------------EGNFLKAWGGISSLQFVLPVTWSYGR-KYG-VTLEQLASWWSERPAKLAGQ-VSKG 337 (411)
Q Consensus 274 ~p~~~~~k~~~-------------~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-l~~~~al~~~T~n~A~~lg~-~~~G 337 (411)
+|++..+|... .++|+.+|.|++|+++.++.+|+..+ +.+ +|++++++++|.|||++||+ ++||
T Consensus 304 aP~~~~eK~~~~~~~~~~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KG 383 (384)
T d2fvka2 304 CSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKG 383 (384)
T ss_dssp CCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred CCCCHHHhcccccccccccccccccCccccCCCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHhHHHHHHhCCCCCCC
Confidence 99987776532 23699999999999999999998644 444 58999999999999999999 8899
Q ss_pred c
Q 015182 338 A 338 (411)
Q Consensus 338 ~ 338 (411)
+
T Consensus 384 s 384 (384)
T d2fvka2 384 S 384 (384)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=9.7e-48 Score=355.35 Aligned_cols=309 Identities=29% Similarity=0.410 Sum_probs=224.0
Q ss_pred ceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-Ccc
Q 015182 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE-NAY 81 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (411)
|+||+|||+++||...+|++++++++|++||||||+||| |+.|+.++.+.++.+.+.++....+++.++..++.. ..+
T Consensus 1 G~ID~HvHlr~PG~~~~ed~~tgs~AAa~GGvTtv~~mP-nt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (310)
T d1xrta2 1 GFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGK 79 (310)
T ss_dssp CEEEEEECCCTTTCTTTCCHHHHHHHHHHTTEEEEEECS-CSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSS
T ss_pred CcEeCcccCCCCCccccccHHHHHHHHHhCCCCEEEECC-CCCCCCCCHHHHHHHHHHhhccCCcccccceeeccCCccc
Confidence 899999999999999999999999999999999999999 899998999999888777766678888888766543 223
Q ss_pred chHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccccc
Q 015182 82 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 161 (411)
Q Consensus 82 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (411)
++.++..+...|+. .|..+ +.+..+.+.+.++++++.+.|.++.+|+++...+...+. .+..+...+.
T Consensus 80 ~~~~~~~~~~~g~~---~f~~~----~~~~~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~~~-----~~~~~~~~~~ 147 (310)
T d1xrta2 80 EIADFYSLKEAGCV---AFTDD----GSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVIN-----EGEVSALLGL 147 (310)
T ss_dssp SBCCHHHHHHHTCC---CBCCT----TSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC-------------------
T ss_pred hhhhhhhcccCcEE---EEECC----CCCccCHHHHHHHHHHhhhhhhhhhhccchhhhhhhhhh-----hhhcccccCc
Confidence 34455555555654 34332 334678899999999999999999999998765443222 2233445567
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcc
Q 015182 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 241 (411)
Q Consensus 162 ~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~ 241 (411)
..||+.+|..++.+++.+++.. +.++|++|+|+. ++++.++.++.+|.+|++++|||||+++.+++...+..
T Consensus 148 ~~rp~~~E~~ai~r~~~la~~~-------~~~~~i~HiSt~-~~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~~~~~~ 219 (310)
T d1xrta2 148 SSRAPEAEEIQIARDGILAQRT-------GGHVHIQHVSTK-LSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSGAN 219 (310)
T ss_dssp ------CHHHHHHHHHHHHHHH-------CCEEEESCCCSH-HHHHHHHHHHHTTCCEEEEECGGGGC------------
T ss_pred cccchHHHHHHHHHHHHHHhhc-------CCeeeccccchH-HHHHHHHHHHHcCCceecchHHHHhhccccccccccch
Confidence 7899999999999999999877 899999999999 99999999999999999999999999998887777888
Q ss_pred eEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHH
Q 015182 242 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS 321 (411)
Q Consensus 242 ~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~ 321 (411)
.++.||+|+.+++++||+++.+|.+++|+|||+|++..+|. .|+.+++|++|+++.++.+++.+.+++++++++++
T Consensus 220 ~k~~PplR~~~d~~aL~~al~~G~id~i~SDHaPh~~~~K~----~~~~~~~G~~g~e~~lp~l~~~v~~g~l~l~~~v~ 295 (310)
T d1xrta2 220 ARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKE----LVEFAMPGIIGLQTALPSALELYRKGIISLKKLIE 295 (310)
T ss_dssp ----------CCHHHHHHHHHHTCSCEECCCBCCCCC---------------CCCCGGGHHHHHHHHHHTTSSCHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHhcCCCeEEecCCCCCCHHHcc----CcccCCCCceeHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999877763 46668889999999999999877777799999999
Q ss_pred HHhHhHHHHhCCCCCC
Q 015182 322 WWSERPAKLAGQVSKG 337 (411)
Q Consensus 322 ~~T~n~A~~lg~~~~G 337 (411)
++|.||||+||+ ++|
T Consensus 296 ~~s~npAki~gL-~~G 310 (310)
T d1xrta2 296 MFTINPARIIGV-DLG 310 (310)
T ss_dssp HHTHHHHHHHTC-SCS
T ss_pred HHHHHHHHHhCC-CCC
Confidence 999999999999 455
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-37 Score=289.19 Aligned_cols=326 Identities=16% Similarity=0.145 Sum_probs=245.0
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHH--hcCCceEEEEEeeecCCCcc
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAA--EKRIYVDVGFWGGLVPENAY 81 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 81 (411)
=.|+|||+|+ | ..++++.+++++|+|+|+||| |+.|+.++.+.++.++++. .....+.+.++.+.......
T Consensus 9 ~~D~HvH~Re-g-----~~~~~t~aa~agG~t~v~~MP-NT~Ppi~t~e~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~ 81 (343)
T d2eg6a1 9 PDDWHLHLRD-G-----DMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSL 81 (343)
T ss_dssp CCEEEECCCS-H-----HHHHHHHHHHHTTCSEEEECC-CCSSCCCSHHHHHHHHHHHHHHSCTTCCCEEEEEEECCTTC
T ss_pred CCcceEecCC-C-----chHhHHHHHHhccCCEEEECC-CCCCCCCCHHHHHHHHHHHHHhccccCceeeeeeeeccCCC
Confidence 3699999997 3 345677889999999999999 9999999999888765543 22333444444333332222
Q ss_pred chHHHHHHHHC-CceEEEEeccCCC-CCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccccc
Q 015182 82 NASALEALLNA-GVLGLKSFMCPSG-INDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST 159 (411)
Q Consensus 82 ~~~~~~~~~~~-g~~~ik~~~~~~~-~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (411)
....+.+.... ...+++.+..... ..+........+...++.++..+..+..|++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------------------- 142 (343)
T d2eg6a1 82 DPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHA------------------- 142 (343)
T ss_dssp CHHHHHHHHHTTSEEEEEECCCCTTSCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCT-------------------
T ss_pred ChhhhhhhhhccccccccccccchhccccccccchHHHHHHHHHHHHhCchhhhcCccccc-------------------
Confidence 33444444443 3556676654321 12234556678888999999999999999886532
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCC-
Q 015182 160 YLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG- 238 (411)
Q Consensus 160 ~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~- 238 (411)
+...+|..+|..++.+.+.++... +.++|++|+|+. +.+++++ +++.+|++++|||||+++.+++...
T Consensus 143 ~~~~~~~eae~~~~~~~~~l~~~~-------~~~~Hi~HiSt~-~~v~~ir---~~~~~vt~EvtPHhL~L~~~d~~~~~ 211 (343)
T d2eg6a1 143 DIDIFDREARFIESVMEPLRQRLT-------ALKVVFEHITTK-DAADYVR---DGNERLAATITPQHLMFNRNHMLVGG 211 (343)
T ss_dssp TSCGGGHHHHHHHHTHHHHHHHCT-------TCCEEECSCCSH-HHHHHHH---TSCTTEEEEECHHHHHCCHHHHHTTS
T ss_pred cccccchhhhhHHHHHHHHHhhcc-------CceEEEEecchh-HHHHHHH---hcCCCcceeecCcHHHhhhhhhhcCC
Confidence 123455567777777777777754 899999999998 7777665 4466799999999999998877543
Q ss_pred -CcceEEcCCCCChhhHHHHHHHHhcCCc-cEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCH
Q 015182 239 -DTRFKCAPPIRDAANKEKLWEALMDGHI-DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTL 316 (411)
Q Consensus 239 -~~~~~~~p~lr~~~~~~~l~~~l~~G~~-~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 316 (411)
....+++||+|+..++++||+.+.+|.+ ++++|||+|++...|. +..++.|++|+++.++.++.... ..+++
T Consensus 212 ~~~~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K~-----~~~~~~g~~g~e~~l~l~l~~~~-~~~~L 285 (343)
T d2eg6a1 212 VRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKE-----SSCGCAGCFNAPTALGSYATVFE-EMNAL 285 (343)
T ss_dssp BCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHS-----STTBCCCCCCTTTHHHHHHHHHH-HTTCG
T ss_pred CccceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCccccccc-----ccccccccCChHHHHHHHHHHHH-hcCCH
Confidence 3667899999999999999998888765 7899999999877663 44578899999999999887654 45799
Q ss_pred HHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccC-CceEEeEEE
Q 015182 317 EQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL-GRRLSGKVL 384 (411)
Q Consensus 317 ~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~~~v~ 384 (411)
+++++++|.|||++||+ +.+|.| ++. +..|+|+.+ .+.++.. |+||. |.++.++|.
T Consensus 286 ~~lv~~~S~nPaki~gL~~~kg~I--------~~~--~~~~~v~~~-~~~sk~~-~tPf~~g~~l~w~vk 343 (343)
T d2eg6a1 286 QHFEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAES-IALTDDT-LVPFLAGETVRWSVK 343 (343)
T ss_dssp GGHHHHHHTHHHHHHTCCCCCSEE--------EEE--CCCEECCSC-EECSSSE-ECCTTTTCEESCEEC
T ss_pred HHHHHHHhHhHHHHhCCCCCCCeE--------EEe--cCceecCcc-ccCCCCC-eEecCCCCccceeeC
Confidence 99999999999999999 667753 333 567999988 8888888 99999 888888773
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Probab=99.83 E-value=1.2e-21 Score=180.83 Aligned_cols=284 Identities=15% Similarity=0.110 Sum_probs=172.5
Q ss_pred ceeecccccCCCCC--------------CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceE
Q 015182 3 GLIDVHAHLDDPGR--------------TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 68 (411)
Q Consensus 3 GlID~H~H~~~~~~--------------~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (411)
|+||+|+|+..+.. ...++..+..+++.++|||+++|+. .. +...+.+.+.++.+.........
T Consensus 16 G~~d~H~Hl~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~-~~-~~~~d~~~l~~~~~~~~~~~~~~ 93 (331)
T d1i0da_ 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVS-TF-DIGRDVSLLAEVSRAADVHIVAA 93 (331)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECC-CG-GGTCCHHHHHHHHHHHTCEEECE
T ss_pred CCEeeeeCcccCcccccccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcC-CC-CCcCCHHHHHHHHHhcCCCEEEE
Confidence 89999999964321 0123445567788999999999986 22 22245666666554433333344
Q ss_pred EEEEeeecCC-CccchHHHHHHH----H-------CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecC
Q 015182 69 VGFWGGLVPE-NAYNASALEALL----N-------AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE 136 (411)
Q Consensus 69 ~~~~~~~~~~-~~~~~~~~~~~~----~-------~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 136 (411)
++++...... .....+++..+. . .+...++....... .....+.+++.++.++++|+++.+|+.
T Consensus 94 ~g~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~g~pv~~h~~ 169 (331)
T d1i0da_ 94 TGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGKA----TPFQELVLKAAARASLATGVPVTTHTA 169 (331)
T ss_dssp EECCSCCCHHHHTCCHHHHHHHHHHHHHTCBTTTTBCCSEEEEECSSSC----CHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred EEEecCcCcccCccCHHHHHHHHHHhhhhhhccccCccceeeccccccc----cHHHHHHHHHHHHHHHHhCCeEEeecc
Confidence 4444211110 011223333322 1 12233444432211 112245677888889999999999987
Q ss_pred CcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCC
Q 015182 137 MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNG 216 (411)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g 216 (411)
..... ...+.+.+..+.. ...++++.|++.. ...+.++.++..|
T Consensus 170 ~~~~~----------------------------~~~~~~~~~~~~~-------~~~~~~i~H~~~~-~~~~~~~~~~~~g 213 (331)
T d1i0da_ 170 ASQRD----------------------------GEQQAAIFESEGL-------SPSRVCIGHSDDT-DDLSYLTALAARG 213 (331)
T ss_dssp GGGTH----------------------------HHHHHHHHHHTTC-------CGGGEEECSGGGC-CCHHHHHHHHHTT
T ss_pred chhhh----------------------------hhhhhhhhhhccc-------CCcceEEEecCCc-chHHHHHHHHhcC
Confidence 64320 0122333333322 3678999999876 6888999999999
Q ss_pred CCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCcc--EEcCCCCCCChhhhhcccCCccccCCC
Q 015182 217 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID--MLSSDHSPTVPELKLLDEGNFLKAWGG 294 (411)
Q Consensus 217 ~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~--~~~sD~~p~~~~~k~~~~~~~~~~~~g 294 (411)
..+.++.+|+++++........+...++.|+.| .+.+++++.+|..+ .++|||.+.....+. .++....+.|
T Consensus 214 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r----~~~~~~~l~~g~~d~i~~~tD~p~~~p~~~~--~~~~~~~~~g 287 (331)
T d1i0da_ 214 YLIGLDHIPHSAIGLEDNASASALLGIRSWQTR----ALLIKALIDQGYMKQILVSNDWLFGFSSYVT--NIMDVMDRVN 287 (331)
T ss_dssp CEEEECCTTCCCTTCTTCHHHHHHHCSSCHHHH----HHHHHHHHHTTCGGGEEECCCCCSEECSSST--THHHHHHHHC
T ss_pred CceeecceeeeccchhhhccccCCccCCChhhh----HHHHHHHHHhcCCCCEEECCCCCCccccccc--CCCccccccC
Confidence 999999999998776554332222223334333 34566777777643 799998432211100 0011123456
Q ss_pred CchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCC
Q 015182 295 ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~ 334 (411)
++|+...+..++..+.+.|+|++++.+++|.||||+|++.
T Consensus 288 ~~g~~~~l~~~~~~~~~~gis~e~i~~i~~~NParlf~l~ 327 (331)
T d1i0da_ 288 PDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLSPT 327 (331)
T ss_dssp TTGGGHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHSCC
T ss_pred CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC
Confidence 6778877777777788889999999999999999999993
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=7.6e-17 Score=144.05 Aligned_cols=269 Identities=16% Similarity=0.136 Sum_probs=130.3
Q ss_pred ceeecccccCCCCCC---ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC
Q 015182 3 GLIDVHAHLDDPGRT---EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN 79 (411)
Q Consensus 3 GlID~H~H~~~~~~~---~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (411)
||||+|+|+..++.. ..++....++.++++||||++|++ ++.+.....+.+....+.........+....+.....
T Consensus 1 GlID~HvHl~~~~~~~~~~~~~~~~~~~~~l~~GvTTv~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (284)
T d1onwa2 1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPS 79 (284)
T ss_dssp CEEEEEECTTCCBCTTSGGGBCCCCCHHHHHHTTEEEEEECC-CSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCSSC
T ss_pred CEEEeccCCCCCCCCcccchhhHHHHHHHHHhCCeEEEecCC-CCCChHhHHHHHHHHHHHHhhcCeeEEEecccccCCc
Confidence 899999999876432 344555567889999999999998 7777777777777665544433333332222111111
Q ss_pred ccchHHHHHHHH--CCceEEEEeccCCCCCCCCCCCHHHHH------HHHHHHHhCCCcEEEecCCcccchhhhhhccCc
Q 015182 80 AYNASALEALLN--AGVLGLKSFMCPSGINDFPMTNASHIK------EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDT 151 (411)
Q Consensus 80 ~~~~~~~~~~~~--~g~~~ik~~~~~~~~~~~~~~~~~~l~------~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~ 151 (411)
............ ....+.+....... . .......+. .........+.++..|......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 145 (284)
T d1onwa2 80 RTITGSVEKDVAIIDRVIGVKCAISDHR--S-AAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKK----------- 145 (284)
T ss_dssp CCSSSCHHHHHHHCTTEEEEEEEESSTT--S-CCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTT-----------
T ss_pred ccccccchhhhhccchhhhhhhhhHHHH--h-hccchHHHHhHHHHHHHHhhccccCCceeccccccHH-----------
Confidence 111111111111 12223322221110 0 111222222 2233344567778787654321
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE---EEEcCC-ChHHHHHHHHHHhHCCCCEEEEccccc
Q 015182 152 LDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL---HIVHLS-DASSSLDLLMEAKTNGDSITVETCPHY 227 (411)
Q Consensus 152 ~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~i~h~~-~~~~~~~~i~~~~~~g~~i~~~~~p~~ 227 (411)
.++.+++.++.. +..+ +..+.. ......+.+... ..+..+....++..
T Consensus 146 --------------------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 197 (284)
T d1onwa2 146 --------------------ALQPIYDLLENC-------DVPISKLLPTHVNRNVPLFEQALEFA-RKGGTIDITSSIDE 197 (284)
T ss_dssp --------------------TTHHHHHHHHTC-------CCCGGGEEEECGGGSHHHHHHHHHHH-HTTCCEEEETTCCS
T ss_pred --------------------HHHHHHHHHHhc-------CCEEEEecccccccccccHHHHHHHH-hcCCeehhhccCCC
Confidence 022334444432 2221 111111 110122333333 33443433222211
Q ss_pred ccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH
Q 015182 228 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 307 (411)
Q Consensus 228 l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~ 307 (411)
. .........++........+.++||+.+.....+.. +...+.+.++.+..+..++.
T Consensus 198 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 254 (284)
T d1onwa2 198 P-------------------VAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDE----GNLTHIGVAGFETLLETVQV 254 (284)
T ss_dssp S-------------------SCHHHHHHHHHHTTCCGGGEEEECCBTCC-----------------CCCCSHHHHHHHHH
T ss_pred c-------------------cCCHHHHHHHHHhCCCCceEEEEecccccccccccc----ccccCCCCChHHHHHHHHHH
Confidence 0 001111222333222234568999987665433321 22234455556666666666
Q ss_pred HHHhcCCCHHHHHHHHhHhHHHHhCCCCCC
Q 015182 308 YGRKYGVTLEQLASWWSERPAKLAGQVSKG 337 (411)
Q Consensus 308 ~~~~~~l~~~~al~~~T~n~A~~lg~~~~G 337 (411)
++.+.|+|++++++++|+||||+||+++||
T Consensus 255 ~~~~~gls~~~al~~aT~npAr~lGL~~kG 284 (284)
T d1onwa2 255 LVKDYDFSISDALRPLTSSVAGFLNLTGKG 284 (284)
T ss_dssp HHHHHCCCHHHHHGGGTHHHHHHTTCTTCS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 666789999999999999999999997787
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=9.4e-17 Score=146.03 Aligned_cols=261 Identities=14% Similarity=0.062 Sum_probs=129.1
Q ss_pred HHHHHHHcCCceeEecCCCCCCC-CCCCHHHHHHHHHHHhcCCceEEEEEeeecC-CCccchHHHHHHHHCCceEEEEec
Q 015182 24 SGTKAAAAGGITTLIDMPLNSDP-STISTETLKLKVDAAEKRIYVDVGFWGGLVP-ENAYNASALEALLNAGVLGLKSFM 101 (411)
Q Consensus 24 ~~~~~a~~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~~ 101 (411)
.+.+.++++||||++|+. +... ....................+.......... ...+....+.+..+.+...+....
T Consensus 51 ~~~~~~l~~GvTtv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (320)
T d1ra0a2 51 QTLKWQIANGIQHVRTHV-DVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGADVVGAIP 129 (320)
T ss_dssp HHHHHHHHTTEEEEEEEE-ECCSTTCHHHHHHHHHHHHHTTTCEEEEEEECTTCSSSSTTHHHHHHHHHHTTCSEECCCG
T ss_pred HHHHHHHhCCeEEEEecc-ccccchHHHHHHHHHHHHhhcccccccccccccccccCcHHHHHHHHHHHHhcccccccCC
Confidence 355778999999999987 3222 1111112222222222222222222111001 111223344555666666554322
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHh
Q 015182 102 CPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 181 (411)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~ 181 (411)
... .....+.+.++.+++.|++.|+++.+|+........... ....... .
T Consensus 130 ~~~---~~~~~~~~~~~~~~~~A~~~g~~~~~h~~~~~~~~~~~~------------------------~~~~~~~---~ 179 (320)
T d1ra0a2 130 HFE---FTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFV------------------------ETVAALA---H 179 (320)
T ss_dssp GGS---SSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCTTCCHH------------------------HHHHHHH---H
T ss_pred CCC---CCccccHHHHHHHHHHHHHcCCCeeeeecccchhHHHhh------------------------hhHHHHH---H
Confidence 111 112245788999999999999999999876432111000 0111111 1
Q ss_pred hhccCCCCCCceEEEEcCCC-----hHHHHHHHHHHhHCCCCEEEEcccccc-cccccccCCCCcceEEcCCCCChhhHH
Q 015182 182 DTRTDGPAEGAHLHIVHLSD-----ASSSLDLLMEAKTNGDSITVETCPHYL-AFSAEEIPDGDTRFKCAPPIRDAANKE 255 (411)
Q Consensus 182 ~~~~~~~~~~~~~~i~h~~~-----~~~~~~~i~~~~~~g~~i~~~~~p~~l-~~~~~~~~~~~~~~~~~p~lr~~~~~~ 255 (411)
.. ....+..+.|+.. .....+.+...++.|+ ....+|... .+.... ...+..+...
T Consensus 180 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~p~~~~~~~~~~--------~~~~~~~~~~--- 241 (320)
T d1ra0a2 180 HE-----GMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGI--NFVANPLVNIHLQGRF--------DTYPKRRGIT--- 241 (320)
T ss_dssp HH-----TCGGGEEEEECGGGGGSCHHHHHHHHHHHHHHTC--EEEECHHHHHHHTTTT--------CCSSCCCCCC---
T ss_pred Hh-----hcccccccccceeccccchhhhHHHHHHhhhcCc--EEEeccchhhhhcccc--------cccccccccC---
Confidence 11 0123333444421 1023344555556665 444556422 111110 0111111111
Q ss_pred HHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHh-cCCCHHHHHHHHhHhHHHHhCCC
Q 015182 256 KLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 256 ~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~~al~~~T~n~A~~lg~~ 334 (411)
...++++.|+.+.++||+..... .+.+...+...+...+..... .++|++|+|+++|.|||++||++
T Consensus 242 ~~~~~~~~G~~v~~gtd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~eal~~aT~ngA~aLgl~ 309 (320)
T d1ra0a2 242 RVKEMLESGINVCFGHDGVFDPW------------YPLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQ 309 (320)
T ss_dssp CHHHHHHTTCCEEECCBCSSBTT------------BSCCCCCHHHHHHHHHHHTTCCSHHHHHGGGGGGTHHHHHHTTCS
T ss_pred chhhHhhcCceEeecCCcCCCCC------------CCCCChhHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 12345677999999999643211 112222221122222222222 23899999999999999999996
Q ss_pred CCCcccccCCcc
Q 015182 335 SKGAIAIGNHAD 346 (411)
Q Consensus 335 ~~G~I~~G~~AD 346 (411)
+ |+|+|||+||
T Consensus 310 ~-Gsi~~Gk~AD 320 (320)
T d1ra0a2 310 D-YGIAAGNSAN 320 (320)
T ss_dssp S-CSSCTTSBCC
T ss_pred C-CccCCCCCcC
Confidence 5 9999999998
|
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7.3e-16 Score=140.73 Aligned_cols=180 Identities=14% Similarity=0.013 Sum_probs=101.6
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
.+...++..+.+. .....+++.++++++.|+++|+++.+|+.+.......+.... ....+
T Consensus 126 ~~~~~v~~~~~~~---~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~e~~~~~~~~----------~~~~~------- 185 (313)
T d2uz9a2 126 KNYSRVKPIVTPR---FSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLY----------PSYKN------- 185 (313)
T ss_dssp HTCSSEEEEEEEC---CGGGCCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHHHHHHS----------TTSSS-------
T ss_pred ccccceeEEEecc---ccccccHHHHHHHHHHhhccccceeeehhcchhHHHHHHHhh----------cccCC-------
Confidence 3455566555543 224578899999999999999999999987543221111100 00001
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
.+....+.++ .+.++.+.|+... .+ +.++.+++.|. ...+||...+.... -.||
T Consensus 186 ----~~~~~~~~g~----l~~~~~~~H~~~l-~~-~e~~~l~~~g~--~~~~~P~~~~~~~~----------~~~~---- 239 (313)
T d2uz9a2 186 ----YTSVYDKNNL----LTNKTVMAHGCYL-SA-EELNVFHERGA--SIAHCPNSNLSLSS----------GFLN---- 239 (313)
T ss_dssp ----HHHHHHHTTC----CSTTEEEEECTTC-CH-HHHHHHHHHTC--EEEECHHHHHHTTC----------CCCC----
T ss_pred ----hHHHHHHcCC----cCCcceEEeeeec-ch-hHHHHHhhhcc--cccccchhhhhccc----------cccc----
Confidence 1112222211 2567778888754 22 33444455565 44567764322110 1122
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchh-hhHHHHHHHHHH------hcCCCHHHHHHHHh
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL-QFVLPVTWSYGR------KYGVTLEQLASWWS 324 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~------~~~l~~~~al~~~T 324 (411)
+.++++.|+.+++|||..+... .+.+ +.+....+.... ..+++++|+|+++|
T Consensus 240 -----v~~l~~~Gv~valGTD~~~~~~----------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~e~l~~AT 298 (313)
T d2uz9a2 240 -----VLEVLKHEVKIGLGTDVAGGYS----------------YSMLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLAT 298 (313)
T ss_dssp -----HHHHHHTTCEEEECCCTTTSCC----------------CCHHHHHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHT
T ss_pred -----hhhhhccCceEEEeCCCCCCCC----------------CCHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Confidence 2345677999999999643211 0111 112222222111 23589999999999
Q ss_pred HhHHHHhCC-CCCCc
Q 015182 325 ERPAKLAGQ-VSKGA 338 (411)
Q Consensus 325 ~n~A~~lg~-~~~G~ 338 (411)
+|+|++||+ +++||
T Consensus 299 ~ngA~aLg~~~~iGS 313 (313)
T d2uz9a2 299 LGGSQALGLDGEIGN 313 (313)
T ss_dssp HHHHHHTTCTTTSSS
T ss_pred HHHHHHhCCCCCcCc
Confidence 999999999 67886
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=99.64 E-value=3.6e-15 Score=137.74 Aligned_cols=277 Identities=17% Similarity=0.163 Sum_probs=161.8
Q ss_pred ceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCC--CC----------------CCCHHHHHHHHHHH-hc
Q 015182 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSD--PS----------------TISTETLKLKVDAA-EK 63 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~--~~----------------~~~~~~~~~~~~~~-~~ 63 (411)
||||+|+|.+..-. ++ ......+..||||++...++.+ |. .-+++.+.++.+.. +.
T Consensus 1 GFID~HtH~D~~~~--~~---p~~~~~~~~GVTT~v~GncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le~~ 75 (358)
T d1m7ja3 1 GFIDSHTHDDNYLL--KH---RDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAA 75 (358)
T ss_dssp CEEESSCCCTTHHH--HC---TTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHS
T ss_pred CceecCCCCchhhc--cC---CCCcccccCCCceEEEeCCCCCcccCCcccccchHHHhccCCCcCcCCHHHHHHHHHhc
Confidence 89999999753200 00 0123568999999985432111 00 00122334444333 34
Q ss_pred CCceEEEEEeeec------------CCCccchHHHHHHH----HCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhC
Q 015182 64 RIYVDVGFWGGLV------------PENAYNASALEALL----NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 127 (411)
Q Consensus 64 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~----~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~ 127 (411)
...+|++.+.+.. +.+.+++++|.+++ +.|+.|++.-..|. ++. ..+.+||.++++.+.++
T Consensus 76 ~~~~Nva~~vgH~~lR~~vmg~~~~~at~~ei~~M~~ll~eal~~GA~G~Stgl~y~--P~~-~A~~~El~~lak~~~~~ 152 (358)
T d1m7ja3 76 PPAVNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYP--PAA-HASTEEIIEVCRPLITH 152 (358)
T ss_dssp CCSSEEEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSG--GGT-TCCHHHHHHHHTHHHHH
T ss_pred CCccceeeecccccccccccCcccccCCHHHHHHHHHHHHHHHhcCCcccccCCccc--ccc-cCCHHHHHHHHHHHHhc
Confidence 4567887765431 12345677777765 47999999877664 222 35789999999999999
Q ss_pred CCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCCh-----
Q 015182 128 KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA----- 202 (411)
Q Consensus 128 g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~----- 202 (411)
|..+..|..+...- ...++.++++++++. |++++++|+...
T Consensus 153 g~~~~~h~r~~~~~---------------------------~~~~~~e~~~~a~~~-------g~~~~ish~~~~~~~~~ 198 (358)
T d1m7ja3 153 GGVYATHMRDEGEH---------------------------IVQALEETFRIGREL-------DVPVVISHHKVMGKLNF 198 (358)
T ss_dssp TCEEEEECSCSSTT---------------------------HHHHHHHHHHHHHHH-------TSCEEECSCCCCSGGGT
T ss_pred CCeeeeeecccccc---------------------------HHHHHHHHHHHHHHc-------CCceEecccccCCCcch
Confidence 99999998764320 013467788888877 999999997631
Q ss_pred ---HHHHHHHHHHhHCCCCEEEEcccccccccc---cccCC-CCcceEEcC---CCCCh---------------------
Q 015182 203 ---SSSLDLLMEAKTNGDSITVETCPHYLAFSA---EEIPD-GDTRFKCAP---PIRDA--------------------- 251 (411)
Q Consensus 203 ---~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~---~~~~~-~~~~~~~~p---~lr~~--------------------- 251 (411)
...+++++.++ +|.+|++++.|+....+. +.+.. ........+ .+...
T Consensus 199 ~~~~~~~~~~~~a~-~G~~i~~d~yPy~ag~t~l~~~~~~~~~~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~ 277 (358)
T d1m7ja3 199 GRSKETLALIEAAM-ASQDVSLDAYPYVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQ 277 (358)
T ss_dssp TTHHHHHHHHHHHH-HHSCEEEEECSCSCEEEECCCCTTTTSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHC
T ss_pred hhHHHHHHHHHHHh-cCCCcceeecCccccccccchhhhhhccchhhhccccChhhccCcHHHHHHHcCCCHHHHHHHHh
Confidence 02334555544 588999999997543222 11100 000111111 11100
Q ss_pred --------hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcC-CCHHHHHH
Q 015182 252 --------ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYG-VTLEQLAS 321 (411)
Q Consensus 252 --------~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~-l~~~~al~ 321 (411)
.+.+.+.+++. -....+|||..++... ..+.....++.++.. +++.+ +|+++|++
T Consensus 278 ~~~~~~~~~~e~~v~~~l~-~p~~~igSDgga~~~~--------------~hpr~~gtf~r~L~~~vRe~~~lsLeeAI~ 342 (358)
T d1m7ja3 278 PAGAIYFMMDEPDVQRILA-FGPTMIGSDGLPHDER--------------PHPRLWGTFPRVLGHYSRDLGLFPLETAVW 342 (358)
T ss_dssp SEEEEECCCCHHHHHHHHH-STTEEECCCCCTTCSS--------------CCTHHHHHHHHHHCCCCCCTCSSCHHHHHH
T ss_pred hccchhhcCCHHHHHHHHh-CCCceEEcCcccCCCC--------------cCCCCcccHHHHHHHHhcCCCcCCHHHHHH
Confidence 01122333333 2345678887654310 122222234444433 44555 99999999
Q ss_pred HHhHhHHHHhCCCCCC
Q 015182 322 WWSERPAKLAGQVSKG 337 (411)
Q Consensus 322 ~~T~n~A~~lg~~~~G 337 (411)
.+|..||+.||++++|
T Consensus 343 k~T~~pA~~~Gl~dRG 358 (358)
T d1m7ja3 343 KMTGLTAAKFGLAERG 358 (358)
T ss_dssp TTTHHHHHHHTCTTCS
T ss_pred HHHHHHHHHhCCCCCC
Confidence 9999999999997777
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=99.62 E-value=2.3e-15 Score=131.39 Aligned_cols=268 Identities=22% Similarity=0.264 Sum_probs=160.4
Q ss_pred ceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCC------C--HHHHHHHHHHHhcCCceEEEEEee
Q 015182 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI------S--TETLKLKVDAAEKRIYVDVGFWGG 74 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
|.||.|+|+-.|. ....|+++||||++..+ +.|... + .-.+..+.+.. ....+|+++.+-
T Consensus 1 GgiDtHvHfi~Pq---------q~~~al~sGiTT~~GgG--tGpa~gt~att~tpG~~~i~~ml~a~-d~~P~N~g~~gk 68 (390)
T d4ubpc2 1 GGIDTHVHFINPD---------QVDVALANGITTLFGGG--TGPAEGSKATTVTPGPWNIEKMLKST-EGLPINVGILGK 68 (390)
T ss_dssp CEEEEEEECCCTT---------HHHHHHHTTEEEEEEEC--CSSCHHHHHSSCCCHHHHHHHHHHHH-TTCSSEEEEEEE
T ss_pred CCccccccccCHH---------HHHHHHhcCCeeeecCc--cCCCCCCCCcccCCCHHHHHHHHHhh-hhCCcceeeeec
Confidence 7899999998763 35789999999999765 333211 1 12455555544 456899998753
Q ss_pred ecCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 75 LVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
.+......+.++++.|+.|+|+.=++ -.++..++.++..|.+++++|.+|...-... |
T Consensus 69 ---Gn~s~~~~l~eqi~aGa~GlKiHEDw-------Gatpa~id~~L~vad~~dvqv~iHtDtlNE~-------g----- 126 (390)
T d4ubpc2 69 ---GHGSSIAPIMEQIDAGAAGLKIHEDW-------GATPASIDRSLTVADEADVQVAIHSDTLNEA-------G----- 126 (390)
T ss_dssp ---CCCSSHHHHHHHHHHTCCEEEEEGGG-------CCCHHHHHHHHHHHHHHTCEEEEECCTTCSS-------C-----
T ss_pred ---cccCChHHHHHHHHhhhheeeccccc-------ccCHHHHHHHHHHhhccCceEEEecCCcccc-------e-----
Confidence 22234457888889999999997543 4688999999999999999999998764321 1
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEcccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSA 232 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~l~~~~ 232 (411)
-++..+...+ |..+|..|..-+- ..-++|+.+...++ +-.+++|..-|.-.
T Consensus 127 -----------------fve~T~~a~~---------gRtiH~~HtEGaGGGHaPDii~~~g~~nv-LpsSTnPT~Pyt~n 179 (390)
T d4ubpc2 127 -----------------FLEDTLRAIN---------GRVIHSFHVEGAGGGHAPDIMAMAGHPNV-LPSSTNPTRPFTVN 179 (390)
T ss_dssp -----------------CHHHHHHHHT---------TCCEEETTTTSTTSSSTTTGGGGGGSTTE-EEBCCSTTSSCBTT
T ss_pred -----------------ehhhHHHHhC---------CceeecccCCCCCCCCCchhHHhcCCCcc-cCCCCCCCCCCccC
Confidence 1334444433 7778998876320 23466766644332 23345554322110
Q ss_pred cccCC-CCc---ceEEcCC-----------CCChhhHHHHHHHH-hcCCccEEcCCCCCCChhhhhcccCCccccCCCCc
Q 015182 233 EEIPD-GDT---RFKCAPP-----------IRDAANKEKLWEAL-MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296 (411)
Q Consensus 233 ~~~~~-~~~---~~~~~p~-----------lr~~~~~~~l~~~l-~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~ 296 (411)
-+.+ +.- .....|. +|.. -.+.-+.| +-|.+..++||......
T Consensus 180 -t~~EhldM~MvcHhL~~~ipeDvafAesRiR~e--TiaAEdvLHD~GaiSi~sSDsQaMGR------------------ 238 (390)
T d4ubpc2 180 -TIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPE--TIAAEDILHDLGIISMMSTDALAMGR------------------ 238 (390)
T ss_dssp -HHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHH--HHHHHHHHHHTTSSCBCCCCBTTSSC------------------
T ss_pred -chhhhcCeEEeeccCCCCChhhHHHHhhcccch--hhhhHHHhhhcCceeeeccCcccccc------------------
Confidence 0000 000 0001111 1111 01111222 23999999999643211
Q ss_pred hhhhHHHHHHHHH---H-hcC-----------CCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCC
Q 015182 297 SLQFVLPVTWSYG---R-KYG-----------VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPE 353 (411)
Q Consensus 297 ~~~~~~~~~~~~~---~-~~~-----------l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~ 353 (411)
+.-.....|+.. + +.| .....-+..+|+|||.+-|+ +.+|||++||.||.++|...
T Consensus 239 -vgEvi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~~t 310 (390)
T d4ubpc2 239 -AGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIHDT 310 (390)
T ss_dssp -TTCHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHHHS
T ss_pred -cchHHHhHHHHHHHHHHhccCCCCccccCCCchhhhcccccccChhHhcCcccccCcccCCcccCCccccCc
Confidence 111122233321 1 111 23677788999999999999 88999999999996555543
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.57 E-value=6.4e-14 Score=128.65 Aligned_cols=164 Identities=14% Similarity=0.137 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
..++++++..++.+++.+.++.+|+............ .....| +...... . ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~------------~~~~~~-------~~~~~~~-~-------~~ 208 (336)
T d2paja2 156 SISPREMRETAAVARRLGLRMHSHLSETVGYQDSAYS------------MYGKSP-------VAFCGEH-D-------WL 208 (336)
T ss_dssp SSCHHHHHHHHHHHHHTTCEEEEECC-------------------------CCCH-------HHHHHHT-T-------CC
T ss_pred ccCHHHHHHHHhhhhccCCceeeeccccchhhHHHHH------------hcCCcc-------ccccccc-c-------cc
Confidence 4689999999999999999999998876542211110 001111 1111111 1 12
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
+......|+... .. +.++.+++.|. ....||...... ....+|++. +++.|+.+++|
T Consensus 209 ~~~~~~~h~~~~-~~-~~~~~l~~~~~--~~~~~p~~~~~~----------~~~~~~~~~---------l~~~Gv~valG 265 (336)
T d2paja2 209 GSDVWYAHLVKV-DA-DEIALLAQTGT--GVAHCPQSNGRL----------GSGICPVRE---------MADAGVPVSIG 265 (336)
T ss_dssp STTEEEESCCSC-CH-HHHHHHHHHTC--EEEECHHHHHCC---------------CCTT---------HHHHTCCEEEC
T ss_pred ccccccccceec-ch-HHHHHHhhccc--cceeccchhhcc----------Cccccchhh---------HHhcCCeEEEE
Confidence 556777787654 22 33333344454 444666532211 112344443 35669999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH-----------------HHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-----------------YGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
||..+.+... +.| .+.++..++. .....++|++|+|+++|+|+|++||+
T Consensus 266 TD~~~s~~~~-----d~~---------~emr~a~~~~r~~~~~~~~~~~~~~~~~~~~~~~t~~eal~~aT~~gA~aLgl 331 (336)
T d2paja2 266 VDGAASNEAA-----DMI---------SEVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGL 331 (336)
T ss_dssp CCHHHHCSCC-----SHH---------HHHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTC
T ss_pred cCCCCCCCcc-----cHH---------HHHHHHHHHHHHhhccccccccccccccCCCCCCCHHHHHHHHHHHHHHHhCc
Confidence 9953322100 000 1122211111 01234699999999999999999999
Q ss_pred CCCCc
Q 015182 334 VSKGA 338 (411)
Q Consensus 334 ~~~G~ 338 (411)
+++|+
T Consensus 332 d~iGk 336 (336)
T d2paja2 332 DEVGK 336 (336)
T ss_dssp TTSSC
T ss_pred cccCC
Confidence 76663
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=1.4e-15 Score=119.54 Aligned_cols=83 Identities=24% Similarity=0.393 Sum_probs=75.4
Q ss_pred hHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCC-C
Q 015182 326 RPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-A 403 (411)
Q Consensus 326 n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~-~ 403 (411)
++|+.+.. ...+.|.+|++|||+|||++..|++..+ ++++++. |+||+|++++|+|.+||++|++||++|++... .
T Consensus 39 ~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~~~~~i~~~-~~~sk~~-~tpf~G~~~~G~v~~Ti~rG~~v~~~g~~~~~~g 116 (142)
T d1kcxa1 39 GGVKTIEANGRMVIIAVGSDADVVIWDPDKMKTITAK-SHKSTVE-YNIFEGMECHGSPLVVISQGKIVFEDGNISVSKG 116 (142)
T ss_dssp SSCEEEECTTCEEECCTTSBCCEEEEEEEEEEECCTT-TCSSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTT
T ss_pred ccceeechhhcceeecccccceEEEEeccceEEEcch-hccccCC-ccCCcCCEEEEEEEEEEECCEEEEECCEEeEcCC
Confidence 56777777 6679999999999999999999999999 9999999 99999999999999999999999999999865 4
Q ss_pred CCccccC
Q 015182 404 CGSPILA 410 (411)
Q Consensus 404 ~g~~~~~ 410 (411)
.|++|..
T Consensus 117 ~G~fl~r 123 (142)
T d1kcxa1 117 MGRFIPR 123 (142)
T ss_dssp CCCBCCC
T ss_pred CCeEecC
Confidence 7998853
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.55 E-value=1.6e-14 Score=131.44 Aligned_cols=175 Identities=16% Similarity=0.089 Sum_probs=95.3
Q ss_pred EEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHH
Q 015182 96 GLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 175 (411)
Q Consensus 96 ~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~ 175 (411)
.+...+.+.. ....+++.++.+.+.++++|+++.+|+.+........... ....+..
T Consensus 128 ~i~~~~~~~~---~~~~~~e~~~~~~~~a~~~~~~~~~H~~E~~~e~~~~~~~------------~~~~~~~-------- 184 (310)
T d2i9ua2 128 IVKPIITPRF---VPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKSL------------HKKSNFY-------- 184 (310)
T ss_dssp SEEECBEECC---GGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHH------------CTTCSSH--------
T ss_pred ccceeecccC---CCccCHHHHHHHHHHhhccccceeehhccchHHHHHHHHH------------hcccccH--------
Confidence 4555555432 2356899999999999999999999987744311111110 0111110
Q ss_pred HHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEccccc-ccccccccCCCCcceEEcCCCCChhhH
Q 015182 176 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY-LAFSAEEIPDGDTRFKCAPPIRDAANK 254 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~-l~~~~~~~~~~~~~~~~~p~lr~~~~~ 254 (411)
.+...+.+.. ...+..+.|+... +.+.++.+++.|+ ....||.. +++.. + .+|
T Consensus 185 -~~~~~~~g~~---~~~~~~~~H~~~~--~~~~i~~la~~g~--~vv~cP~sn~~l~~------g-----~~p------- 238 (310)
T d2i9ua2 185 -GEVYDKFGLF---GNTPTLMAHCIHS--SKEEINLIKRNNV--TIVHCPTSNFNLGS------G-----MMP------- 238 (310)
T ss_dssp -HHHHHHTTCS---SSSCEEEEECCSC--CHHHHHHHHHTTC--EEEECHHHHHHTTC------C-----CCC-------
T ss_pred -HHHHHhcCCc---cCCceeeeeeeee--chhHHHHHHhcCC--EEEEeecccccccC------C-----ccc-------
Confidence 1111222111 1234556677643 2234455556675 44578853 22210 1 132
Q ss_pred HHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-------hcCCCHHHHHHHHhHhH
Q 015182 255 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-------KYGVTLEQLASWWSERP 327 (411)
Q Consensus 255 ~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~l~~~~al~~~T~n~ 327 (411)
+.++++.|+.+++|||..+.+.. +.| .+.++...++... ...++++|+|+++|.|+
T Consensus 239 --v~~l~~~Gv~v~lGTD~~~~~~~------dm~---------~~m~~a~~~~~~~~~~~~~~~~~l~~~e~l~~aT~~g 301 (310)
T d2i9ua2 239 --VRKYLNLGINVVLGSDISAGHTC------SLF---------KVIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKG 301 (310)
T ss_dssp --HHHHHHTTCEEEECCCBTTBCCS------CHH---------HHHHHHHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHH
T ss_pred --ccchhccCceEEEecCCCCCCCC------CHH---------HHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHH
Confidence 33456779999999997554320 011 1222222222111 23489999999999999
Q ss_pred HHHhCCCCCCc
Q 015182 328 AKLAGQVSKGA 338 (411)
Q Consensus 328 A~~lg~~~~G~ 338 (411)
|+++|. +||
T Consensus 302 A~alGr--iGS 310 (310)
T d2i9ua2 302 GSFFGK--VGS 310 (310)
T ss_dssp HTTTSS--CSS
T ss_pred HHHhcC--CCC
Confidence 999983 665
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=99.53 E-value=3.8e-13 Score=117.28 Aligned_cols=260 Identities=23% Similarity=0.315 Sum_probs=157.6
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCC------C--HHHHHHHHHHHhcCCceEEEEEeee
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI------S--TETLKLKVDAAEKRIYVDVGFWGGL 75 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (411)
.||+|+|+-.|. ....|+++||||++..+ +.|... + .-.+..+.+.. ....+|+++.+-
T Consensus 1 GiDtHvHfi~Pq---------q~~~al~sGiTT~iGgG--tGPa~Gt~att~tpg~~~i~~ml~a~-d~~P~N~g~~gk- 67 (389)
T d1e9yb2 1 GIDTHIHFISPQ---------QIPTAFASGVTTMIGGG--TGPADGTNATTITPGRRNLKWMLRAA-EEYSMNLGFLAK- 67 (389)
T ss_dssp EEEEEEETTCTT---------HHHHHHHTTEEEEEEEC--CSSCHHHHHCCCCCHHHHHHHHHHHH-TTSSSEEEEEEE-
T ss_pred CccccccccCHH---------HHHHHHhcCCeEEecCc--cCCCCCCCccccCCChhHHHHHHHhh-hcCCcceeeeec-
Confidence 389999998763 35789999999999765 333111 1 22455555544 456899998753
Q ss_pred cCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcc
Q 015182 76 VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 155 (411)
Q Consensus 76 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 155 (411)
.+......+.++++.|+.|+|+.=+ +-.++..++.++..|.+++++|.+|...-.+. |
T Consensus 68 --Gn~s~~~~l~eqi~aGa~GlKiHED-------wGatp~~Id~~L~vad~~dvqv~iHtDtlNE~-------G------ 125 (389)
T d1e9yb2 68 --GNASNDASLADQIEAGAIGFKIHED-------WGTTPSAINHALDVADKYDVQVAIHTDTLNEA-------G------ 125 (389)
T ss_dssp --CCCSCHHHHHHHHHTTCSEEEECGG-------GCCCHHHHHHHHHHHHHTTCEEEECCCTTCSS-------C------
T ss_pred --cCCCChHHHHHHHHhccceeecccc-------ccCCHHHHHHHHHHHHhhCceEEecCCCcccc-------c------
Confidence 2223446788999999999999644 34688999999999999999999998763321 1
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEccccccccccc
Q 015182 156 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHYLAFSAE 233 (411)
Q Consensus 156 ~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~ 233 (411)
.++..+...+ |..+|..|...+- ..-++|+.+...++ +-.+++|..-|.-.
T Consensus 126 ----------------fve~T~~a~~---------gRtiH~~HtEGaGGGHAPDii~~~~~~nv-LpsSTnPT~Pyt~n- 178 (389)
T d1e9yb2 126 ----------------CVEDTMAAIA---------GRTMHTFHTEGAGGGHAPDIIKVAGEHNI-LPASTNPTIPFTVN- 178 (389)
T ss_dssp ----------------CHHHHHHHHT---------TCCEEETTTTSTTSCSTTTGGGGGGSTTE-EEEECGGGCSCBTT-
T ss_pred ----------------chhhHHHHhC---------CCcceeeecCCCCCCCccHHHHHccCCCc-cCCCCCCCCCcccc-
Confidence 1344444433 7778999976420 14577776654443 34566664332110
Q ss_pred ccCC-CCc---ceEEcCC-----------CCChhhHHHHHHHHh-cCCccEEcCCCCCCChhhhhcccCCccccCCCCch
Q 015182 234 EIPD-GDT---RFKCAPP-----------IRDAANKEKLWEALM-DGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 297 (411)
Q Consensus 234 ~~~~-~~~---~~~~~p~-----------lr~~~~~~~l~~~l~-~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~ 297 (411)
-+.+ +.- .....|. +|.. -.+.-+.|. -|.+..++||......
T Consensus 179 t~~EhldMlmvcHhL~~~ipeDvafAesRiR~e--TIaAEdvLhD~GaiSi~sSDsqaMGR------------------- 237 (389)
T d1e9yb2 179 TEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQ--TIAAEDTLHDMGAFSITSSDSQAMGR------------------- 237 (389)
T ss_dssp HHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHH--HHHHHHHHHHTTSCCEECCCTTSSCC-------------------
T ss_pred cHHHhhchhhhhccCCCCCchhHHHHhhcccch--hhhhHHHhhccCceeeecccccccch-------------------
Confidence 0000 000 0000111 1111 111112232 3999999999643211
Q ss_pred hhhHHHHHHHHH---H-hcC-----------CCHHHHHHHHhHhHHHHhCC-CCCCcccccCCcc
Q 015182 298 LQFVLPVTWSYG---R-KYG-----------VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHAD 346 (411)
Q Consensus 298 ~~~~~~~~~~~~---~-~~~-----------l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~AD 346 (411)
+.-.....|+.. + +.| .....-+..+|+|||-.-|+ +.+|||++||.|+
T Consensus 238 vgEvi~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~ 302 (389)
T d1e9yb2 238 VGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHH 302 (389)
T ss_dssp TTSHHHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGS
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCccCCCcchHHHHhhhhhcccChHHhcCchhccCccccccccc
Confidence 111222334321 1 111 23677888999999999999 8899999999986
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.52 E-value=3.4e-15 Score=118.23 Aligned_cols=84 Identities=20% Similarity=0.400 Sum_probs=76.4
Q ss_pred HhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCC-
Q 015182 325 ERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA- 402 (411)
Q Consensus 325 ~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~- 402 (411)
.++|+++.. ...+.|.+|++|||+++|++..|++..+ +++++.. |+||+|.++.|+|.+||++|++||++|+++.+
T Consensus 39 ~~~~~iida~gk~v~i~~G~dad~~i~dp~~~~~i~~~-~~~sk~~-~spfeG~~~~G~v~~TivrG~iV~~~g~~~~~~ 116 (150)
T d2ftwa1 39 KEGIKVVDATDKLLLIDVGCDGDIVIWDPNQSKTISKD-THHHAVD-FNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVK 116 (150)
T ss_dssp CSSCCEEECTTCEEECSTTSBCCEEEEEEEEEEECCTT-TCCCSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCT
T ss_pred CCccEEEecccceeeeecCccCceEEEecCceEEEecc-ccccccc-cccCcCCEEEEEEeEEEECCEEEEECCEEeecC
Confidence 468888888 6678899999999999999999999999 9999998 99999999999999999999999999999865
Q ss_pred CCCccccC
Q 015182 403 ACGSPILA 410 (411)
Q Consensus 403 ~~g~~~~~ 410 (411)
..|++|..
T Consensus 117 g~Grfl~R 124 (150)
T d2ftwa1 117 GSGRFVPR 124 (150)
T ss_dssp TCCCBCCC
T ss_pred CCceEccC
Confidence 47998853
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.51 E-value=6.6e-14 Score=121.98 Aligned_cols=129 Identities=15% Similarity=0.031 Sum_probs=67.5
Q ss_pred ceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecC-----
Q 015182 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVP----- 77 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 77 (411)
||||+|+|+..++..+.++. .+.++++||||++|++ ...+ ...+.+ .+..+........+......
T Consensus 1 GlID~H~H~~~~~~~~~~~~---~~~~l~~GvTTv~d~~-~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (267)
T d2icsa2 1 GWIDDHVHCFEKMALYYDYP---DEIGVKKGVTTVIDAG-TTGA--ENIHEF---YDLAQQAKTNVFGLVNISKWGIVAQ 71 (267)
T ss_dssp CEEEEEECCCTTSSSSCCCH---HHHTGGGTEEEEEEES-SSCT--TTHHHH---HHHHHTSSSEEEEEEESSTTTTSSS
T ss_pred CeEEeCcCCCCCCCcchhhH---HHHHhCCeeEEEECCC-CCCh--hHHHHH---HHHHHhhhcchhhcccccccccccc
Confidence 89999999988776666654 5678999999999997 4332 333333 33333322222222221111
Q ss_pred ---CCc--cchHHHHHHHHCCceEEEEeccCCCCCCCCCC-CHHHHHHHHHHHHhCCCcEEEecCCccc
Q 015182 78 ---ENA--YNASALEALLNAGVLGLKSFMCPSGINDFPMT-NASHIKEGLSVLARYKRPLLVHAEMEKG 140 (411)
Q Consensus 78 ---~~~--~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~-~~~~l~~~~~~a~~~g~~v~~H~~~~~~ 140 (411)
.+. .....+....+.+...++.+.......+.... ..+........+...++.+..|+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 140 (267)
T d2icsa2 72 DELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSAPP 140 (267)
T ss_dssp CTTSSGGGCCHHHHHHHHHHCTTTEEEEEEEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSSSS
T ss_pred cccCChhhcCHHHHHHHHhhhhhhhhhhhhhhcccccccCCcHHHHHHHHHHHHhcccceeeecccchh
Confidence 011 12334444444343333332221100011112 3344445555677789999999877543
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=9.4e-14 Score=124.46 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 015182 111 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 190 (411)
Q Consensus 111 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~ 190 (411)
.++++.++.+.+.|+++|+++.+|+.+..... +| +.. ..+.++ .
T Consensus 128 ~~~~~~~~~~~~~A~~~~~~i~iH~~e~~~e~---------------------~~-------~~~----l~~~g~----l 171 (281)
T d1p1ma2 128 LCSEEYLKRVFDTAKSLNAPVTIHLYETSKEE---------------------YD-------LED----ILNIGL----K 171 (281)
T ss_dssp TSCHHHHHHHHHHHHHTTCCEEEEESCSTTCC---------------------CC-------THH----HHTTTT----T
T ss_pred hhhhhhhHHHHHHHhccCccccccccCCcccc---------------------hh-------HHH----HHHcCC----C
Confidence 57899999999999999999999986643210 01 111 112221 2
Q ss_pred CceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEc
Q 015182 191 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLS 270 (411)
Q Consensus 191 ~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~ 270 (411)
+.++.+.|+... . .+.++.+++.| +...+||..-+.- +. -.|| +.++++.|+.++||
T Consensus 172 ~~~~~~~H~~~~-~-~~di~~la~~~--~~vv~cP~sn~~l-------g~---~~~~---------~~~~~~~Gv~v~LG 228 (281)
T d1p1ma2 172 EVKTIAAHCVHL-P-ERYFGVLKDIP--FFVSHNPASNLKL-------GN---GIAP---------VQRMIEHGMKVTLG 228 (281)
T ss_dssp TSCEEEEECTTC-C-GGGTTTTTTSS--EEEEECHHHHHHT-------TC---CCCC---------HHHHHHTTCEEEEC
T ss_pred Cccccccceeee-c-HHHHHHHHhcC--Cccccccchhhhh-------cc---cchh---------HHHHHhCCCeEEEE
Confidence 567777787753 1 22344455555 5666888642211 10 1122 34567789999999
Q ss_pred CCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHhCCC
Q 015182 271 SDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 271 sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~lg~~ 334 (411)
||+.+.+.... .| .+.++...+.... ...++++++++++|.|+||+||++
T Consensus 229 TD~~~s~~~~d-----~~---------~em~~a~~~~~~~~~~~~~~~~~l~~aT~~gA~aLGl~ 279 (281)
T d1p1ma2 229 TDGAASNNSLN-----LF---------FEMRLASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFK 279 (281)
T ss_dssp CCCTTTTSCCC-----HH---------HHHHHHHHHHHTTCTTSSCHHHHHHHHTHHHHHHHTCS
T ss_pred CCCCCCCCCcC-----HH---------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 99765432110 01 1223222222212 134899999999999999999984
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.47 E-value=9e-13 Score=117.79 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=42.8
Q ss_pred HHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhHhHHHHhCC-CCC
Q 015182 259 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-VSK 336 (411)
Q Consensus 259 ~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~~~al~~~T~n~A~~lg~-~~~ 336 (411)
++++.|+.+++|||+.+... ++ . .+...+.+ +.+.|+|+.|+|+++|+|||++||+ +++
T Consensus 239 ~~~~~Gv~v~lGTD~~~~~~--------~~-------~----~l~~~~~~~~~~~gl~~~eal~~aT~~~A~~LGl~~~~ 299 (301)
T d2puza2 239 ALRDAGAEIALATDCNPGTS--------PL-------T----SLLLTMNMGATLFRMTVEECLTATTRNAAKALGLLAET 299 (301)
T ss_dssp HHHHHTCCEEECCCCCSSSC--------CB-------C----CHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTS
T ss_pred HHHHCCCeEEEEeCCCCCCC--------cc-------c----hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCc
Confidence 44666999999999654321 11 1 11112222 3467999999999999999999999 778
Q ss_pred Cc
Q 015182 337 GA 338 (411)
Q Consensus 337 G~ 338 (411)
||
T Consensus 300 GS 301 (301)
T d2puza2 300 GT 301 (301)
T ss_dssp SS
T ss_pred Cc
Confidence 86
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.46 E-value=3.3e-14 Score=107.43 Aligned_cols=71 Identities=27% Similarity=0.496 Sum_probs=63.8
Q ss_pred hHhHHHHhCC---CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 324 SERPAKLAGQ---VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 324 T~n~A~~lg~---~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
+.++|+.+.. ...|.|++|++|||+|||++.+|++..+ +++|++. |+||+|.+++|+|.+||++|++||+|
T Consensus 39 ~~~~a~viD~~g~~~~~~l~~G~~ADl~i~Dp~~~~~v~~~-~~~Sk~~-nspf~g~~l~G~v~~T~~~G~~v~~d 112 (112)
T d1xrta1 39 LVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKEWILNEE-TNLSKSR-NTPLWGKVLKGKVIYTIKDGKMVYKD 112 (112)
T ss_dssp CCSSEEEEECTTSEEEECCCTTSBCCEEEEEEEEEEECSTT-TCCSSCC-CCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred CcccceEEehhcccccceeecccceEEEEecCCccEEECHH-HccCcCC-CceecCCEEeeEEEEEEECCEEEEeC
Confidence 4567777654 2368999999999999999999999999 9999999 99999999999999999999999986
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.46 E-value=1.9e-12 Score=115.78 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=42.8
Q ss_pred HHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-CCCC
Q 015182 259 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ-VSKG 337 (411)
Q Consensus 259 ~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~-~~~G 337 (411)
++++.|+.+++|||+.+.... + ..+ ...+...+...|+|++|+|+++|+|||++||+ +++|
T Consensus 238 ~l~~~Gv~v~lgTD~~~~~~~--------------~-~~l---~~~~~~a~~~~gl~~~eal~~aT~~~A~~lG~~~~~G 299 (300)
T d2bb0a2 238 AMIDEGVCVSLATDFNPGSSP--------------T-ENI---QLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAG 299 (300)
T ss_dssp HHHHTTCCEEECCCBBTTTBC--------------C-CCH---HHHHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTTTSS
T ss_pred HHHHCCCEEEEEeCCCCCCCc--------------h-hhH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcchhhC
Confidence 456779999999996432210 0 001 11112223567999999999999999999999 7788
Q ss_pred c
Q 015182 338 A 338 (411)
Q Consensus 338 ~ 338 (411)
+
T Consensus 300 ~ 300 (300)
T d2bb0a2 300 Q 300 (300)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.44 E-value=1.3e-13 Score=106.42 Aligned_cols=71 Identities=21% Similarity=0.402 Sum_probs=65.6
Q ss_pred cccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCC-CCCccccC
Q 015182 338 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 338 ~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~-~~g~~~~~ 410 (411)
.|++|.+|||+++|++..|++..+ .++++.. |+||+|++++|+|.+||++|++||++|++... +.|++|..
T Consensus 55 ~~~vG~DAD~~l~Dp~~~~~v~~~-~~~sk~~-~tpf~G~~~~G~v~~Ti~rG~~v~~~ge~~~~~g~G~~i~r 126 (126)
T d1gkra1 55 TLQVGSDADLLILDLDIDTKVDAS-QFRSLHK-YSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTR 126 (126)
T ss_dssp SCCTTSBCCEEEEESCCCEECCGG-GCSSSCC-CCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBCCC
T ss_pred ceeecccchhheeccccceeccHH-HHHhhhc-ccccCCcEEEeEEEEEEECCEEEEECCEEEecCCCCeEccC
Confidence 489999999999999999999998 8999998 99999999999999999999999999999854 57998863
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=99.43 E-value=3.2e-12 Score=113.40 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHH-HHhcCCCHHHHHHHHhHhHHHHhCC-CC
Q 015182 258 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQ-VS 335 (411)
Q Consensus 258 ~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~~~al~~~T~n~A~~lg~-~~ 335 (411)
.+++++|+++++|||+.|... + +.+ +...+.. +...|||++|+|+++|+||||+||+ ++
T Consensus 238 ~~l~~aGv~v~lGTD~~~~~~-------------~-~~~-----l~~~~~~~~~~~glt~~eal~~aT~~~A~~lG~~~~ 298 (301)
T d2q09a2 238 VALRKAGVPMAVSSDINPGTA-------------P-IVS-----LRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQEQ 298 (301)
T ss_dssp HHHHHTTCCEEECCCCBTTTB-------------C-CCC-----HHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTT
T ss_pred HHHHHCCCeEEEEeCCCCCCC-------------C-cch-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcccc
Confidence 345677999999999754321 0 101 1111222 3467999999999999999999999 66
Q ss_pred CCc
Q 015182 336 KGA 338 (411)
Q Consensus 336 ~G~ 338 (411)
+|+
T Consensus 299 iG~ 301 (301)
T d2q09a2 299 LGQ 301 (301)
T ss_dssp SSS
T ss_pred cCc
Confidence 674
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.42 E-value=7.6e-13 Score=119.55 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=68.1
Q ss_pred CceeecccccCCCCC---------------------CccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHH
Q 015182 2 PGLIDVHAHLDDPGR---------------------TEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA 60 (411)
Q Consensus 2 PGlID~H~H~~~~~~---------------------~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~ 60 (411)
|||||+|+|+..... ...+....+.+.+++.||||++|+. . ....+.....
T Consensus 1 PGlIdaH~Hl~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~G~Ttv~d~~-~------~~~~~~~~~~- 72 (308)
T d2imra2 1 PPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIV-W------APEVMDALLA- 72 (308)
T ss_dssp SCCCEEEEESSCCHHHHHHCHHHHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEE-C------SHHHHHHHHT-
T ss_pred CCccchhhChhhhCccccCCCHHHHHHHHHhccccccHHHHHHHHHHHHHHcCCeEEEehh-c------CHHHHHHHHH-
Confidence 999999999964310 0011123456667899999999987 2 1223332221
Q ss_pred HhcCCceEEEEEe-eecCCCc-cchHHHHHH----HHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 015182 61 AEKRIYVDVGFWG-GLVPENA-YNASALEAL----LNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVH 134 (411)
Q Consensus 61 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~----~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H 134 (411)
+......+.... ...+.+. +.+.....+ .......++..+... ....++.+.++.....+++.++++..|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h 148 (308)
T d2imra2 73 -REDLSGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERPGLRLGLSPH---TPFTVSHRLMRLLSDYAAGEGLPLQIH 148 (308)
T ss_dssp -CTTCCEEEEEEECBCCGGGHHHHHHHHHHHHHHHHTTCBTTEEEEEEEC---CSSSBCHHHHHHHHHHHHHHTCCBEEE
T ss_pred -HhCcCeEEEeeecCCCCCCHHHHHHHHHHHHHHHhccCCCceEEeeecc---cccccchHHHHHHhhhccccCccceee
Confidence 222222222211 1111111 112222222 222233344433332 223467899999999999999999999
Q ss_pred cCCcc
Q 015182 135 AEMEK 139 (411)
Q Consensus 135 ~~~~~ 139 (411)
+....
T Consensus 149 ~~~~~ 153 (308)
T d2imra2 149 VAEHP 153 (308)
T ss_dssp ESCSH
T ss_pred eeccc
Confidence 88754
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.35 E-value=5.3e-12 Score=112.41 Aligned_cols=62 Identities=15% Similarity=0.019 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC-
Q 015182 255 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ- 333 (411)
Q Consensus 255 ~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~- 333 (411)
..++++.+.|+++++|||+ +..+ +.. + ...+.+..+.|+|+.|+|+++|+|||++||+
T Consensus 248 ~~~~~l~~~Gv~v~lGTD~-~~~~---------------~~~-~----~~el~~~~~~Gls~~eaL~~aT~~~A~~LGl~ 306 (310)
T d2qs8a2 248 DTFRKAYEKGVKIAFGTDA-GVQK---------------HGT-N----WKEFVYMVENGMPAMKAIQSATMETAKLLRIE 306 (310)
T ss_dssp HHHHHHHHHTCCBCCCCCB-TTBC---------------TTC-T----THHHHHHHHTTCCHHHHHHHTTHHHHHHTTCT
T ss_pred HHHHHHHHCCCeEEEecCC-CCCC---------------ccH-H----HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcC
Confidence 4456667789999999996 3221 000 0 1112334678999999999999999999999
Q ss_pred CCCC
Q 015182 334 VSKG 337 (411)
Q Consensus 334 ~~~G 337 (411)
+++|
T Consensus 307 d~iG 310 (310)
T d2qs8a2 307 DKLG 310 (310)
T ss_dssp TTSS
T ss_pred CCcC
Confidence 6666
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.34 E-value=2.2e-11 Score=108.49 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 254 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 254 ~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
...+..+.++|+.+++|||. |.... + .+...+.++ .+|+|+.|+|+++|+|||++||+
T Consensus 249 ~~~~~~l~~aGv~v~~GTD~-~~~~~--------------~------~~~~el~~~-~~gls~~eaL~~ATi~~A~aLg~ 306 (311)
T d2r8ca2 249 LHSIEIMKRAGVKMGFGTDL-LGEAQ--------------R------LQSDEFRIL-AEVLSPAEVIASATIVSAEVLGM 306 (311)
T ss_dssp HHHHHHHHHTTCEECCCCCC-CGGGG--------------G------GTTHHHHHH-TTTSCHHHHHHHTTHHHHHHTTC
T ss_pred hHHHHHHHHCCCeEEEEeCC-CCCch--------------H------HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHCC
Confidence 45566677889999999995 32210 0 000112222 34999999999999999999999
Q ss_pred -CCCC
Q 015182 334 -VSKG 337 (411)
Q Consensus 334 -~~~G 337 (411)
+++|
T Consensus 307 ~d~iG 311 (311)
T d2r8ca2 307 QDKLG 311 (311)
T ss_dssp TTTSS
T ss_pred CcCCC
Confidence 5666
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.33 E-value=1.1e-11 Score=110.35 Aligned_cols=65 Identities=11% Similarity=-0.065 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHH-hcCCCHHHHHHHHhHhHHHHhCC
Q 015182 255 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR-KYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 255 ~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
..+.++.+.|+.+++|||.. .... + +.. +..-+.+.. ..|+|+.|+|+++|+||||+||+
T Consensus 258 ~~~~~~~~~Gv~v~~GtD~~-~~~~------------~-~~~-----l~~el~~~~~~~Gls~~eaL~~aT~n~A~~lgl 318 (324)
T d2p9ba2 258 SGARQAHEAGLMIGVGTDTG-MTFV------------P-QYA-----TWRELELLVAYAGFSPAEALHAATAVNASILGV 318 (324)
T ss_dssp HHHHHHHHTTCCBCCCCCTT-STTS------------C-TTC-----HHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHcCCeEEEEeCCC-CCcC------------h-hhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC
Confidence 45556678899999999952 2110 0 101 111122333 46999999999999999999999
Q ss_pred -CCCCc
Q 015182 334 -VSKGA 338 (411)
Q Consensus 334 -~~~G~ 338 (411)
+++||
T Consensus 319 ~d~~GS 324 (324)
T d2p9ba2 319 DAETGS 324 (324)
T ss_dssp TTTSSS
T ss_pred CcCcCc
Confidence 77886
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.33 E-value=4.6e-11 Score=105.76 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHhCCC
Q 015182 255 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 255 ~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~lg~~ 334 (411)
..+.++.++|+.+++|||+...+. + ... ..+.+..+.|+|+.|+|+++|+|||++||++
T Consensus 242 ~~~~~l~~aGv~v~lGTD~~~~~~---------~-------~~~-----~el~~~~~~Gls~~eaL~~aT~n~A~~lGl~ 300 (303)
T d3be7a2 242 ENFMNAHRRGAIITFGTDAGIFDH---------G-------DNA-----KQFAYMVEWGMTPLEAIQASTIKTATLFGIE 300 (303)
T ss_dssp HHHHHHHHHTCCEECCCCBTTBCT---------T-------CGG-----GHHHHHHHTTCCHHHHHHTTTHHHHHHHTCS
T ss_pred HHHHHHHHCCCeEEEEeCCCCccc---------H-------HHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCc
Confidence 445566677999999999632110 0 001 1122346789999999999999999999997
Q ss_pred CCC
Q 015182 335 SKG 337 (411)
Q Consensus 335 ~~G 337 (411)
++|
T Consensus 301 D~G 303 (303)
T d3be7a2 301 NIG 303 (303)
T ss_dssp SCS
T ss_pred ccC
Confidence 777
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.30 E-value=2.5e-12 Score=85.12 Aligned_cols=61 Identities=20% Similarity=0.404 Sum_probs=46.1
Q ss_pred cccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCCCCCccccC
Q 015182 338 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPILA 410 (411)
Q Consensus 338 ~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~~~g~~~~~ 410 (411)
+|+||++|||||||++. +.+. ... ... +.+ ...+.+||+||++||++|++++..+|+.||.
T Consensus 1 ri~~G~~ADlvvfDp~~---i~d~-~~~-~~~-~~~------~~Gi~~v~VnG~~v~~~g~~~~~~~G~~lrR 61 (61)
T d1m7ja2 1 QVQPGYYADLVVFDPAT---VADS-ATF-EHP-TER------AAGIHSVYVNGAAVWEDQSFTGQHAGRVLNR 61 (61)
T ss_dssp SCCTTSBCCEEEECTTT---CBCC-CCS-SST-TCC------CBSEEEEEETTEEEEETTEECSCCCCCBCCC
T ss_pred CCCCCcCCCEEEECHHH---ccCc-ccc-ccc-ccc------cceeEEEEECCEEEEECCEECCCCCCEEeeC
Confidence 48999999999999884 2222 111 111 333 3458999999999999999999999999974
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.25 E-value=1.1e-11 Score=112.09 Aligned_cols=30 Identities=7% Similarity=-0.279 Sum_probs=26.9
Q ss_pred HHhcCCCHHHHHHHHhHhHHHHhCC-CCCCc
Q 015182 309 GRKYGVTLEQLASWWSERPAKLAGQ-VSKGA 338 (411)
Q Consensus 309 ~~~~~l~~~~al~~~T~n~A~~lg~-~~~G~ 338 (411)
..+.++|+.|+|+++|.|||++||+ +++||
T Consensus 295 ~~~~gl~~~eal~~AT~ngA~aLG~~d~iGS 325 (325)
T d2ooda2 295 AERNKLSPYRGFWSVTLGGAEGLYIDDKLGN 325 (325)
T ss_dssp HHHTCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred cccCCCCHHHHHHHHHHHHHHHhCCCcccCc
Confidence 3467899999999999999999999 77886
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=99.20 E-value=1.6e-10 Score=100.79 Aligned_cols=163 Identities=23% Similarity=0.303 Sum_probs=108.8
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCC------C--HHHHHHHHHHHhcCCceEEEEEeee
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI------S--TETLKLKVDAAEKRIYVDVGFWGGL 75 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (411)
.||+|+|+-.|. ....|+++||||++..+ +.|... + .-.++.+.+.. ....+|++|.+-
T Consensus 1 GiDtHvHfi~Pq---------q~~~al~sGiTT~iGgG--tGPa~Gt~att~tpg~~~~~~ml~a~-d~~P~N~g~~gk- 67 (385)
T d1ejxc2 1 GIDTHIHWICPQ---------QAEEALVSGVTTMVGGG--TGPAAGTHATTCTPGPWYISRMLQAA-DSLPVNIGLLGK- 67 (385)
T ss_dssp EEEEEEECSCTT---------HHHHHHHTTEEEEEEEC--CSSSHHHHHSSCCCHHHHHHHHHHHH-TTSSSEEEEEEE-
T ss_pred CccccccccCHH---------HHHHHHhcCCeeeecCc--cCCCCCCCCcCcCCCHHHHHHHHHhh-hhCCcceeeeec-
Confidence 389999998763 35789999999999865 333211 1 22455665544 456899998753
Q ss_pred cCCCccchHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcc
Q 015182 76 VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR 155 (411)
Q Consensus 76 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~ 155 (411)
.+....+.+.++++.|+.|+|+.=+ +-.++..++.++..|.+++++|.+|...-... |
T Consensus 68 --Gn~s~~~~l~eqi~AGa~GlKiHED-------wGatpa~id~~L~vad~~dvqv~iHtDtlNE~-------g------ 125 (385)
T d1ejxc2 68 --GNVSQPDALREQVAAGVIGLKIHED-------WGATPAAIDCALTVADEMDIQVALHSDTLNES-------G------ 125 (385)
T ss_dssp --CCCSSHHHHHHHHHHTCSEEEEEGG-------GCCCHHHHHHHHHHHHHHTCEEEEECCTTCSS-------C------
T ss_pred --cccCChHHHHHHHHhhhceecCCcc-------cccChHHHHHHHHhHhhcCceEEEeccccccc-------c------
Confidence 2223445788888999999999754 34688999999999999999999998763321 1
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChH--HHHHHHHHHhHCCCCEEEEccccc
Q 015182 156 SYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS--SSLDLLMEAKTNGDSITVETCPHY 227 (411)
Q Consensus 156 ~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~--~~~~~i~~~~~~g~~i~~~~~p~~ 227 (411)
-++..+...+ |..+|..|..-+- ..-++|+.+...++ +-.+++|..
T Consensus 126 ----------------fvedT~~a~~---------gRtiH~~H~EGaGGGHAPDii~~~~~~nv-lpsSTnPT~ 173 (385)
T d1ejxc2 126 ----------------FVEDTLAAIG---------GRTIHTFHTEGAGGGHAPDIITACAHPNI-LPSSTNPTL 173 (385)
T ss_dssp ----------------CHHHHHHHHT---------TCCEEESSTTSTTSSSTTTGGGGGGCTTE-EEEEESTTS
T ss_pred ----------------cchhhHHHhC---------CCceeeeecccCCCCccchhhHhhccCcc-cCCCCCCCC
Confidence 1334444433 7779999976420 23467776654443 344566643
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.20 E-value=1.4e-11 Score=94.73 Aligned_cols=70 Identities=30% Similarity=0.579 Sum_probs=63.5
Q ss_pred ccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCCC-CCccccC
Q 015182 339 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPILA 410 (411)
Q Consensus 339 I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~~-~g~~~~~ 410 (411)
+.+|.+|||+++|++..+++..+ +++++.. |+||+|++++|.|.+||++|++||++|++...+ .|++|+.
T Consensus 52 g~i~~~~~~~i~dP~~~~tIt~~-~~~s~~~-~tpyeG~~~~G~~~~Ti~rG~~V~~~g~~~~~~g~G~~l~R 122 (127)
T d1nfga1 52 IAVGSDADIVLWDPEAEMVIEQT-AMHNAMD-YSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKR 122 (127)
T ss_dssp CSTTSBCCEEEEEEEEEEECCGG-GSCSSCS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCCC
T ss_pred ecccccccceeeccccceEEehH-HhccccC-cCCCcCCEEeeEEEEEEECCEEEEECCEEeecCCCCeEccC
Confidence 36788999999999999999998 8888888 999999999999999999999999999999764 7988853
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.20 E-value=1.9e-11 Score=94.40 Aligned_cols=70 Identities=24% Similarity=0.510 Sum_probs=63.7
Q ss_pred ccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCCC-CCccccC
Q 015182 339 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPILA 410 (411)
Q Consensus 339 I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~~-~g~~~~~ 410 (411)
+.+|.+||++++|++..+.+..+ +++++.. |+||+|.++.+.|.+|+++|++||++|+++.++ .|++|+.
T Consensus 53 ~~v~~~~~~~~~dp~~~~~i~~~-~~~s~~~-~tpf~G~~~~g~v~~Ti~rG~~V~~dg~~~~~~G~G~fv~R 123 (128)
T d1k1da1 53 IVVGSDADLVIFDPNIERVISAE-THHMAVD-YNAFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQYLKR 123 (128)
T ss_dssp CSTTSBCCEEEEEEEEEEECCTT-TCCSSSS-CCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCSCBCCC
T ss_pred eecccccceEEeeccccEEEecc-ccccccc-eeeecCcEEEEEEEEEEECCEEEEECCEEEecCCCCeEecC
Confidence 45788999999999999999998 8999998 999999999999999999999999999998654 7998864
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.18 E-value=2.1e-11 Score=93.17 Aligned_cols=68 Identities=21% Similarity=0.407 Sum_probs=61.1
Q ss_pred ccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCC-CCCccccC
Q 015182 339 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPILA 410 (411)
Q Consensus 339 I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~-~~g~~~~~ 410 (411)
+-|| ||+++||++..++++.+ .++++.. |+||+|++++|.|.+|+++|++||++|+++.. ..|++|+.
T Consensus 50 v~~g--~d~~~~d~~~~~tis~~-~~~s~~~-~tpfeG~~~~G~v~~ti~rG~~v~~~g~~~~~~g~G~~l~R 118 (123)
T d1gkpa1 50 VFPG--ADLVVYDPQYRGTISVK-TQHVNND-YNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRR 118 (123)
T ss_dssp EEEC--CCEEEEETTCCEECCGG-GCCSSSS-CCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred EecC--cceEEEecccccccchh-hhhcccc-cccccccEEeeEEEEEEECCEEEEECCEEEecCCCCeEeCC
Confidence 4455 69999999999999998 8888888 99999999999999999999999999999965 48998864
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=5.5e-11 Score=105.50 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=38.5
Q ss_pred ceeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCC
Q 015182 3 GLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPS 47 (411)
Q Consensus 3 GlID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~ 47 (411)
||||+|+|++.++...++++.+..+.++++|||||++++ ++.|.
T Consensus 1 GlID~HvH~~~~~~~~~~~~~~~~~~~l~~GvTTv~~~~-~t~~~ 44 (288)
T d1o12a2 1 GFVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLATT-VSTSL 44 (288)
T ss_dssp CEEEEEECEETTEETTTTCHHHHHHHHHTTTEEEEEEEC-CSCCH
T ss_pred CeEEecccCCCCCccccccHHHHHHHHHhCCeEEEcCCC-CCCCH
Confidence 899999999887767788888999999999999999998 66553
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=7.3e-14 Score=106.18 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=65.1
Q ss_pred CCHHHHHHHHhHhHHHHhCCCCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 314 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
.+.++++.++|..+|.++|...+|+|++|+.|||++||.+.++..|.. +..+ .-.|.+ +++|.+|||+|++|
T Consensus 26 ~t~~~~~~~~t~~~a~~~G~~~~GrIe~G~~ADivviDl~~p~~~p~~-dp~~----~lV~~~---~~~V~~V~V~Gk~V 97 (123)
T d1p1ma1 26 GTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADLVVIDLDLPEMFPVQ-NIKN----HLVHAF---SGEVFATMVAGKWI 97 (123)
T ss_dssp TEEEEEEESSCCCSEECTTEEEEESCCTTSBCCEEEEECCSGGGCSGG-GHHH----HHHHTC---CSCCSEEEETTEEE
T ss_pred ccHHHHHhhhhccChhhcCCccccccCCCCCcCEEEEeCCCCcccchh-hhHH----HHHhcc---CCCccEEEECCEEE
Confidence 477788899999999999997799999999999999999988766654 3332 222322 45799999999999
Q ss_pred EEcCcccC
Q 015182 394 YKEGNHAP 401 (411)
Q Consensus 394 ~~~g~~~~ 401 (411)
|++|+++.
T Consensus 98 v~dG~~~~ 105 (123)
T d1p1ma1 98 YFDGEYPT 105 (123)
T ss_dssp EETTBCTT
T ss_pred EECCeEcc
Confidence 99999874
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.12 E-value=9.5e-11 Score=90.35 Aligned_cols=70 Identities=29% Similarity=0.534 Sum_probs=63.7
Q ss_pred ccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCCC-CCccccC
Q 015182 339 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA-CGSPILA 410 (411)
Q Consensus 339 I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~~-~g~~~~~ 410 (411)
+.+|.+|||+++|++..+++..+ +++++.. |+||+|+++.+.|..|+++|++||++|++...+ .|++|..
T Consensus 52 g~i~~~~~~~i~dp~~~~tI~~~-~~~s~~~-~tpfeG~~~~G~v~~Ti~rG~~v~~~g~~~~~~g~G~fi~R 122 (127)
T d1ynya1 52 IAVGSDADIVIFDPHVKRTLSVE-THHMNVD-YNPFEGMEVYGEVVSVLSRGSFVVRDKQFVGQAGSGQYIKR 122 (127)
T ss_dssp CSTTSBCCEEEEEEEEEEEECTT-TCCSSSS-CCTTTTEEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCC
T ss_pred ccccccchhhhhccccceEEeeh-hhhhccC-cCCcCCCEEeeEEEEEEECCEEEEECCEEeecCCCceEecC
Confidence 55799999999999999999998 8888888 999999999999999999999999999998654 7999853
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.2e-10 Score=102.84 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=32.2
Q ss_pred ceeecccccC-------CCCCCccCChHHHHHHHHcCCceeEecCCCCCC
Q 015182 3 GLIDVHAHLD-------DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSD 45 (411)
Q Consensus 3 GlID~H~H~~-------~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~ 45 (411)
||||+|+|+. .+...+.+++....+.++++||||+++++ ++.
T Consensus 1 GlID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~-~~~ 49 (297)
T d1yrra2 1 GFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTL-ITT 49 (297)
T ss_dssp CEEEEEESEETTEESSSSTTTSSHHHHHHHHHHHHHTTEEEEEEEE-ECC
T ss_pred CEEeHhhCCcCCCCCCCCcccCCHHHHHHHHHHHHccCeEEEeCCC-CCC
Confidence 8999999962 23344556677788899999999999987 443
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.6e-09 Score=94.41 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceE
Q 015182 115 SHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHL 194 (411)
Q Consensus 115 ~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (411)
+.+++.++.|+++|+||.+|+...... . +.+....+.+ ....+.
T Consensus 138 ~~f~~~~~~A~~~~lPv~iH~r~~~~~-------------------------------~-e~~~~l~~~~----~~~~~~ 181 (291)
T d1bf6a_ 138 KVFIAAALAHNQTGRPISTHTSFSTMG-------------------------------L-EQLALLQAHG----VDLSRV 181 (291)
T ss_dssp HHHHHHHHHHHHHCCCEEEECGGGCSH-------------------------------H-HHHHHHHHTT----CCGGGE
T ss_pred HHHHHHHHHHHHhCCCeEEeccchhhh-------------------------------H-HHHHHHHHhC----CCcccc
Confidence 467888888999999999998753211 1 1112222221 113456
Q ss_pred EEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCc--cEEcCC
Q 015182 195 HIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI--DMLSSD 272 (411)
Q Consensus 195 ~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~--~~~~sD 272 (411)
.+.|+... .+.+.++++.+.|..+..+...... .+| .......+.++++.+.. +.++||
T Consensus 182 ~~~H~~f~-~~~e~~~~~~~~G~~i~~~g~~~~~----------------~~~--~~~~~~~~~~lv~~~p~drilleTD 242 (291)
T d1bf6a_ 182 TVGHCDLK-DNLDNILKMIDLGAYVQFDTIGKNS----------------YYP--DEKRIAMLHALRDRGLLNRVMLSMD 242 (291)
T ss_dssp EECCCCSS-CCHHHHHHHHHTTCEEEECCTTCTT----------------TSC--HHHHHHHHHHHHHTTCGGGEEECCC
T ss_pred eecccCCC-CCHHHHHHHHhcCeeEEeccccccc----------------CCc--HHHhHHHHHHHHHhCCchhEEEecC
Confidence 77898443 4678888888888766543222110 011 12234566677777643 588999
Q ss_pred CCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHhHhHHHHh
Q 015182 273 HSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLA 331 (411)
Q Consensus 273 ~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~al~~~T~n~A~~l 331 (411)
. |+...... .|-.+....+..+...+.+.|+|.+++-++.+.||+|+|
T Consensus 243 ~-p~~~p~~~----------~g~~~~~~~~~~~~~~l~~~g~s~e~i~~i~~~Np~rlf 290 (291)
T d1bf6a_ 243 I-TRRSHLKA----------NGGYGYDYLLTTFIPQLRQSGFSQADVDVMLRENPSQFF 290 (291)
T ss_dssp C-CSGGGSGG----------GTSCCTTHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHC
T ss_pred C-CCcccccc----------CCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 4 65321111 122222233333444456679999999999999999987
|
| >d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.05 E-value=8.5e-12 Score=97.52 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=62.3
Q ss_pred CHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEE
Q 015182 315 TLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 393 (411)
Q Consensus 315 ~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v 393 (411)
+.+++..++|.++|+.+++ +..|+|++||.|||++||.+.++..+.. +..+ ...|.+. ...|.+||++||+|
T Consensus 36 ~~~~i~~~at~~Ga~~l~~~~~ig~l~~G~~ADli~~d~~~p~~~p~~-dp~~----~lV~~~~--~~~V~~v~V~G~~v 108 (139)
T d2paja1 36 TIDAIGALAPRPGETIVDATDCVIYVAVGYAADIAVYRLDDPRYFGLH-DPAI----GPVASGG--RPSVMALFSAGKRV 108 (139)
T ss_dssp EEEEESSCCCCTTCEEEECBTCEEECSTTSBCCEEEEECCSGGGTTCS-SGGG----HHHHSCS--CCEEEEEEETTEEE
T ss_pred cHHHHHhhhhhccchhcCCCCccceeccCCcccEEEEcCCCcccCCCC-CHHH----HHHHhhC--cCcceeEEEcCEEE
Confidence 4445555789999999999 6689999999999999999987766554 3322 2344432 45799999999999
Q ss_pred EEcCcccC
Q 015182 394 YKEGNHAP 401 (411)
Q Consensus 394 ~~~g~~~~ 401 (411)
++||+++.
T Consensus 109 v~dg~l~~ 116 (139)
T d2paja1 109 VVDDLIEG 116 (139)
T ss_dssp EETTBCTT
T ss_pred EECCEecc
Confidence 99999874
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.03 E-value=1.8e-12 Score=98.31 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCE
Q 015182 313 GVTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 391 (411)
Q Consensus 313 ~l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~ 391 (411)
.+++.++++++|.+||+++++ +++|+|++|+.|||+|||.+++.. .||.-- ...|..||++|+
T Consensus 45 il~~~~al~~aT~~~A~~l~~~~~~g~l~~g~~ad~~~~~~~~~~~--------------~~y~~~--~~~v~~vi~~G~ 108 (113)
T d2bb0a1 45 IVFAGQKGAEAGYEADEIIDCSGRLVTLKAGRSADLVIWQAPNYMY--------------IPYHYG--VNHVHQVMKNGT 108 (113)
T ss_dssp EEEEEETTTTTTCEEEEEEECTTCEEECSTTSBCCEEEESSSSTTH--------------HHHSCS--SCCEEEEEETTE
T ss_pred ccCHHHHHHHHHHHHHHHhCCcCcEEEEcCCCcccEEEecCCchhh--------------chhhcC--CCChhEEEECCE
Confidence 378889999999999999999 779999999999999999875322 233211 236999999999
Q ss_pred EEEEc
Q 015182 392 LVYKE 396 (411)
Q Consensus 392 ~v~~~ 396 (411)
+||+.
T Consensus 109 iv~~r 113 (113)
T d2bb0a1 109 IVVNR 113 (113)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99974
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=98.87 E-value=9.2e-12 Score=88.90 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=46.3
Q ss_pred HHHHHHhHhHHHHhCC-CC--CCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEE
Q 015182 318 QLASWWSERPAKLAGQ-VS--KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 318 ~al~~~T~n~A~~lg~-~~--~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~ 394 (411)
++++.+|.|+|+++++ ++ .|+|++||+|||+++|.|+...+. ...+|..||.+|+++.
T Consensus 32 ~ai~~~t~~~A~il~l~d~illG~I~~Gk~ADlvlvdgnPL~dI~-------------------~l~~i~~Vik~G~v~k 92 (95)
T d3be7a1 32 AEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVIENPLANIR-------------------TLEEVAFVMKEGKVYK 92 (95)
T ss_dssp EEEECCCCSSSEEEEEEEEEEEESCCTTSBCCEEEESSCTTTCGG-------------------GTTSCCEEEETTEEEE
T ss_pred HHHHhhccChHHhcCCCCccccceeccCceeeEEEEcCCchhhhH-------------------HhcCCCEEEECCEEEc
Confidence 4577889999999999 44 399999999999999988432221 1124789999999665
Q ss_pred EcC
Q 015182 395 KEG 397 (411)
Q Consensus 395 ~~g 397 (411)
++|
T Consensus 93 ~e~ 95 (95)
T d3be7a1 93 REG 95 (95)
T ss_dssp ECC
T ss_pred CCC
Confidence 543
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=5.6e-07 Score=78.52 Aligned_cols=251 Identities=17% Similarity=0.132 Sum_probs=133.1
Q ss_pred eeecccccCCCCCC-ccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC---C
Q 015182 4 LIDVHAHLDDPGRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE---N 79 (411)
Q Consensus 4 lID~H~H~~~~~~~-~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 79 (411)
|||+|+|+.....+ ..+++......|...||+.++..+ .+.+......+..+....+.++ .|+-|. .
T Consensus 3 lIDtH~Hld~~~~e~~~~d~~~vi~~a~~~gv~~ii~~~-------~~~~~~~~~~~l~~~~~~i~~~--~GiHP~~~~~ 73 (265)
T d1yixa1 3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVA-------TTLPSYLHMRDLVGERDNVVFS--CGVHPLNQND 73 (265)
T ss_dssp EEEEEECGGGSCTTTTCSSHHHHHHHHHHTTEEEEEECC-------SSHHHHHHHHHHHCSCTTEEEE--ECCCTTCCSS
T ss_pred EEEecccCCccccchhhcCHHHHHHHHHHcCCCEEEEee-------CCHHHHHHHHHHHHhccccccc--cccccccccc
Confidence 79999999753322 234566667788999999988655 2345566655555443333332 233332 1
Q ss_pred ccchHHHHHHHH-CCceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCcccc
Q 015182 80 AYNASALEALLN-AGVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 157 (411)
Q Consensus 80 ~~~~~~~~~~~~-~g~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 157 (411)
..+++.+.++.. ..+.+|. +.+++.........-.+.+.+-++.|.++++|+.+|+.+...
T Consensus 74 ~~~~e~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPv~iH~r~a~~----------------- 136 (265)
T d1yixa1 74 PYDVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARA----------------- 136 (265)
T ss_dssp CCCHHHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHH-----------------
T ss_pred ccchHHHHHHhccCCceeeecccccccccccchHHHHHHHHHHHHHHHHhCCCcccchhhHHH-----------------
Confidence 234566666664 3444331 223332111100111235677788899999999999987321
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCC
Q 015182 158 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 237 (411)
Q Consensus 158 ~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~ 237 (411)
.+..++..... ...+. +.|+.+. +.+.++++.+.|..+. +++...+..
T Consensus 137 --------------~~~~il~~~~~-------~~~~~-v~H~FsG--~~~~a~~~l~~g~~~s--~~g~~~~~~------ 184 (265)
T d1yixa1 137 --------------DTLAILREEKV-------TDCGG-VLHCFTE--DRETAGKLLDLGFYIS--FSGIVTFRN------ 184 (265)
T ss_dssp --------------HHHHHHHHTTG-------GGTCE-EETTCCS--CHHHHHHHHTTTCEEE--ECGGGGSTT------
T ss_pred --------------HHHHHHHhhcc-------cCcce-EEEeecC--ChHHHHHHHHcCCeec--Cccccccch------
Confidence 11122221111 02233 5688763 6677777777776443 333221110
Q ss_pred CCcceEEcCCCCChhhHHHHHHHHhc-CC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcCC
Q 015182 238 GDTRFKCAPPIRDAANKEKLWEALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGV 314 (411)
Q Consensus 238 ~~~~~~~~p~lr~~~~~~~l~~~l~~-G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~l 314 (411)
...+++.++. .. ...+-|| +|+.... ++..-.+ -|. .+....+.+ .-.++
T Consensus 185 ----------------~~~l~~~v~~iPldrlLlETD-~P~~~p~------~~~~~~n-~P~---~i~~~~~~iA~i~~~ 237 (265)
T d1yixa1 185 ----------------AEQLRDAARYVPLDRLLVETD-SPYLAPV------PHRGKEN-QPA---MVRDVAEYMAVLKGV 237 (265)
T ss_dssp ----------------CHHHHHHHHHSCGGGEEECCC-BTSCCCT------TCTTSCC-CGG---GHHHHHHHHHHHHTS
T ss_pred ----------------hHHHHHHHHhcchhceEeecC-CcccCcc------ccCCCCC-CcH---HHHHHHHHHHHHHCc
Confidence 1223333332 11 2467899 4653211 1110000 011 223333322 33589
Q ss_pred CHHHHHHHHhHhHHHHhCC--CCCCcc
Q 015182 315 TLEQLASWWSERPAKLAGQ--VSKGAI 339 (411)
Q Consensus 315 ~~~~al~~~T~n~A~~lg~--~~~G~I 339 (411)
+.+++.+..+.|.-++||+ .+.++|
T Consensus 238 ~~~ev~~~~~~Na~~lf~l~~~~~~~~ 264 (265)
T d1yixa1 238 AVEELAQVTTDNFARLFHIDASRLQSI 264 (265)
T ss_dssp CHHHHHHHHHHHHHHHTTCCGGGGCCC
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHhccc
Confidence 9999999999999999999 455665
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=4.3e-06 Score=72.38 Aligned_cols=248 Identities=13% Similarity=0.056 Sum_probs=127.3
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC----
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 79 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 79 (411)
|||+|+|+..+. ..+++..-.+.|...||+.++..+ .+++......+.++....+..+ .|+-|..
T Consensus 1 liD~H~HL~~~~--f~~d~~~vl~~a~~~gV~~ii~~~-------~~~~~~~~~~~la~~~~~v~~a--~GiHP~~~~~~ 69 (260)
T d1xwya1 1 MFDIGVNLTSSQ--FAKDRDDVVACAFDAGVNGLLITG-------TNLRESQQAQKLARQYSSCWST--AGVHPHDSSQW 69 (260)
T ss_dssp CEEEEECTTSGG--GTTTHHHHHHHHHHTTCCEEEECC-------CSHHHHHHHHHHHHHSTTEEEE--ECCCGGGGGGC
T ss_pred CEEEEeCCCChH--HhCCHHHHHHHHHHCCCCEEEEec-------CCHHHHHHHHHHHHhCCcccch--hhcCcchhhhh
Confidence 699999997542 345666677889999999998765 2355666665555443333322 2333321
Q ss_pred -ccchHHHHHHHH-CCceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 80 -AYNASALEALLN-AGVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 80 -~~~~~~~~~~~~-~g~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
....+.+.++.. ..+.+|. +.+++.........-.+.+.+-++.|.++++||.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~vaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPviiH~r~a~----------------- 132 (260)
T d1xwya1 70 QAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAH----------------- 132 (260)
T ss_dssp CHHHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH-----------------
T ss_pred hhhHHHHHHHHHhcchhhhhhhhcccccccccchHHHHHHHHHHHHHHHhcCCceEeeeccch-----------------
Confidence 112333444433 2332221 12333210010001124566777889999999999998632
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
.+++++.++... ...+. +.|+.+. +.+.++.+.+.|..+. +++..++..
T Consensus 133 -----------------~~~~~il~~~~~----~~~~~-v~H~f~g--~~~~~~~~~~~g~~~s--~~g~~~~~~----- 181 (260)
T d1xwya1 133 -----------------ERFMTLLEPWLD----KLPGA-VLHCFTG--TREEMQACVAHGIYIG--ITGWVCDER----- 181 (260)
T ss_dssp -----------------HHHHHHHGGGGG----GSSCE-EECSCCC--CHHHHHHHHHTTCEEE--ECGGGGCTT-----
T ss_pred -----------------hHHHHHHHHhhc----cCccc-chhhhhc--cHHHHHHhhhhccccc--cCccccchh-----
Confidence 122222332200 02233 4587663 5667777777776443 333222110
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhc-C-CccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMD-G-HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 313 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~-G-~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 313 (411)
....+++.+.. . -...+=||. |+... .++...+.|-..--..+....+.+ .-.+
T Consensus 182 ----------------~~~~~~~~~~~iPldrlllETD~-P~~~p------~~~~~~~~~~~NeP~~l~~v~~~lA~~~g 238 (260)
T d1xwya1 182 ----------------RGLELRELLPLIPAEKLLIETDA-PYLLP------RDLTPKPSSRRNEPAHLPHILQRIAHWRG 238 (260)
T ss_dssp ----------------TSHHHHHHGGGSCGGGEEECCCT-TSCCC------TTCTTCCCSSCCCGGGHHHHHHHHHHHHT
T ss_pred ----------------hHHHHHHHHHhhhhhheeeecCC-CCCCC------ccccccccCCCCChHHHHHHHHHHHHHhC
Confidence 01123333332 1 134678994 55321 112111111100001233333333 3358
Q ss_pred CCHHHHHHHHhHhHHHHhCC
Q 015182 314 VTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~ 333 (411)
++++++.+.++.|.-++||+
T Consensus 239 ~~~~ev~~~~~~N~~~~f~l 258 (260)
T d1xwya1 239 EDAAWLAATTDANVKTLFGI 258 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999997
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=6.2e-06 Score=71.35 Aligned_cols=243 Identities=14% Similarity=0.091 Sum_probs=127.1
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCC-----
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPE----- 78 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 78 (411)
+||+|+|+.... ..++.......+...||+.++..+ .+++..+...+.++....+.. ..|+-|.
T Consensus 5 lIDsH~HLd~~~--~~~d~~~vi~~a~~~gV~~ii~~~-------~~~~~~~~~~~la~~~~~i~~--a~GiHP~~~~~~ 73 (260)
T d1j6oa_ 5 MVDTHAHLHFHQ--FDDDRNAVISSFEENNIEFVVNVG-------VNLEDSKKSLDLSKTSDRIFC--SVGVHPHDAKEV 73 (260)
T ss_dssp EEEEEECTTSGG--GTTTHHHHHHTTTTTTEEEEEEEC-------SSHHHHHHHHHHHTTCTTEEE--EECCCGGGGGGC
T ss_pred cEEeccCCCChh--hCcCHHHHHHHHHHCCCCEEEEec-------CCHHHHHHHHHHHHhcccccc--ccccChhhcccc
Confidence 799999996432 334555666777899999998654 235566666665554333322 2233332
Q ss_pred CccchHHHHHHHHC-CceEE-EEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccc
Q 015182 79 NAYNASALEALLNA-GVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 156 (411)
Q Consensus 79 ~~~~~~~~~~~~~~-g~~~i-k~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
..+.++.+..+.+. .+.+| -+.+++.-.......-.+.+.+.++.|.++++|+.+|+.+..
T Consensus 74 ~~~~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vF~~ql~lA~~~~lPviiH~r~a~----------------- 136 (260)
T d1j6oa_ 74 PEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAY----------------- 136 (260)
T ss_dssp CTTHHHHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH-----------------
T ss_pred cchhhhhhHHHHhhCCeeeEeeccccccccccHHHHHHHHHHHHHHHHHhcCcceEEeeccch-----------------
Confidence 12234555555542 33333 123343210000011124577888999999999999997632
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccC
Q 015182 157 YSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 236 (411)
Q Consensus 157 ~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~ 236 (411)
..++++.++.. . ...+. +.|+.+. +.+.++.+.+.|..+. +++...+..
T Consensus 137 -----------------~~~~~il~~~~--~--~~~~~-i~H~fsG--~~~~~~~~l~~g~~is--~~g~~~~~~----- 185 (260)
T d1j6oa_ 137 -----------------SEAYEILRTES--L--PEKRG-VIHAFSS--DYEWAKKFIDLGFLLG--IGGPVTYPK----- 185 (260)
T ss_dssp -----------------HHHHHHHHHSC--C--CSSCE-EETTCCS--CHHHHHHHHHHTEEEE--ECGGGGCTT-----
T ss_pred -----------------HHHHHHHHhhc--C--CCCCe-eeecccc--CHHHHHHHHhCCCcee--eccccccch-----
Confidence 12333333321 1 13344 4588764 5667777666675443 333221110
Q ss_pred CCCcceEEcCCCCChhhHHHHHHHHhc-CC-ccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 015182 237 DGDTRFKCAPPIRDAANKEKLWEALMD-GH-IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 313 (411)
Q Consensus 237 ~~~~~~~~~p~lr~~~~~~~l~~~l~~-G~-~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 313 (411)
...+++.++. .. ...+-|| +|+-.... +..-. --|. .+......+ .-.+
T Consensus 186 -----------------~~~~~~~v~~iPldrlllETD-~P~l~p~~------~~~~~-n~P~---~l~~v~~~iA~~~~ 237 (260)
T d1j6oa_ 186 -----------------NEALREVVKRVGLEYIVLETD-CPFLPPQP------FRGKR-NEPK---YLKYVVETISQVLG 237 (260)
T ss_dssp -----------------CHHHHHHHHHHCGGGEEECCC-BTSCCCGG------GTTSC-CCGG---GHHHHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHhcccceEEEecC-CCCCCCcc------cCCCC-CChH---HHHHHHHHHHHHhC
Confidence 1123333322 11 3467899 46532111 10000 0011 233333332 3358
Q ss_pred CCHHHHHHHHhHhHHHHhCC
Q 015182 314 VTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~ 333 (411)
++.+++.+..+.|.-++|+.
T Consensus 238 ~~~~ev~~~~~~N~~rlF~~ 257 (260)
T d1j6oa_ 238 VPEAKVDEATTENARRIFLE 257 (260)
T ss_dssp SCHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=2.2e-05 Score=67.77 Aligned_cols=245 Identities=18% Similarity=0.114 Sum_probs=120.3
Q ss_pred eeecccccCCCCCCccCChHHHHHHHHcCCceeEecCCCCCCCCCCCHHHHHHHHHHHhcCCceEEEEEeeecCCC----
Q 015182 4 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPEN---- 79 (411)
Q Consensus 4 lID~H~H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 79 (411)
+||+|+|+... ...++.......+...||+.++..+ +.+ . .+....+.++....+.. ..|+-|..
T Consensus 5 ~ID~H~HLd~~--~~~~d~~~~l~~a~~~gV~~~v~~~--t~~--~---~~~~~~~l~~~~~~i~~--~~GiHP~~~~~~ 73 (259)
T d1zzma1 5 FIDTHCHFDFP--PFSGDEEASLQRAAQAGVGKIIVPA--TEA--E---NFARVLALAENYQPLYA--ALGLHPGMLEKH 73 (259)
T ss_dssp EEESCBCTTST--TTTTCHHHHHHHHHHTTEEEEEEEC--CSG--G---GHHHHHHHHHHCTTEEE--EECCCGGGGGGC
T ss_pred EEEeCcCCCCh--hhCcCHHHHHHHHHHcCCCEEEEec--CCH--H---HHHHHHHHHhcCccccc--cccCCchHhhcc
Confidence 79999999543 2344566667788999999887654 222 2 23333333332222322 22333321
Q ss_pred -ccchHHHHHHHH---CCceEEE-EeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCc
Q 015182 80 -AYNASALEALLN---AGVLGLK-SFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 154 (411)
Q Consensus 80 -~~~~~~~~~~~~---~g~~~ik-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~ 154 (411)
....+.+..+.. ..+.++. +.+++.........-.+.+++.++.|.++++||.+|+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~iGEiGld~~~~~~~~~~q~~~f~~ql~lA~~~~~Pv~IH~r~a~~-------------- 139 (259)
T d1zzma1 74 SDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHD-------------- 139 (259)
T ss_dssp CHHHHHHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCHH--------------
T ss_pred chhhHHHHHHHHhccCcccceeccccccccccchhhhHHHHHHHHHHHHHHHhccchhhhhHHHHH--------------
Confidence 111222333322 2232221 112221101100011246777888999999999999876321
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccc
Q 015182 155 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 234 (411)
Q Consensus 155 ~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~ 234 (411)
+++++..... ..+..+.|..+. +.+.++++.+.|..+ ++++...+...
T Consensus 140 --------------------~~~~~l~~~~------~~~~~i~H~f~g--~~~~~~~~l~~g~~~--si~~~~~~~~~-- 187 (259)
T d1zzma1 140 --------------------KLAMHLKRHD------LPRTGVVHGFSG--SLQQAERFVQLGYKI--GVGGTITYPRA-- 187 (259)
T ss_dssp --------------------HHHHHHHHHC------CTTCEEETTCCS--CHHHHHHHHHTTCEE--EECGGGGCTTT--
T ss_pred --------------------HHHHhhhccc------cccceeeecccC--CHHHHHHHHHcCCCc--cccccccccch--
Confidence 1222222221 112236788763 667777777777644 34443222110
Q ss_pred cCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHHHH-HhcC
Q 015182 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYG 313 (411)
Q Consensus 235 ~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 313 (411)
.+...+.+.+-. -...+-|| +|+... .++...+ ..+. .+......+ .-.+
T Consensus 188 -----------------~~~~~~v~~iPl-driL~ETD-~P~~~~------~~~~~~~-~~P~---~~~~~~~~iA~i~~ 238 (259)
T d1zzma1 188 -----------------SKTRDVIAKLPL-ASLLLETD-APDMPL------NGFQGQP-NRPE---QAARVFAVLCELRR 238 (259)
T ss_dssp -----------------CSHHHHHHHSCG-GGEEECCC-BTSSCC------TTCTTSC-CCGG---GHHHHHHHHHHHCS
T ss_pred -----------------HHHHHHHHhhcc-ceEEEecC-CCCcCC------CcCCCCC-CchH---HHHHHHHHHHHHhC
Confidence 011122222211 13467899 464211 1111110 0111 222333332 3457
Q ss_pred CCHHHHHHHHhHhHHHHhCCC
Q 015182 314 VTLEQLASWWSERPAKLAGQV 334 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~~ 334 (411)
++.+++.+..+.|.-++|+++
T Consensus 239 ~~~~ev~~~~~~N~~rlf~lp 259 (259)
T d1zzma1 239 EPADEIAQALLNNTYTLFNVP 259 (259)
T ss_dssp SCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999873
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.38 E-value=1.9e-09 Score=80.11 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=46.7
Q ss_pred HhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCC-CcccCCCCCCccCCceEEeEEEEEEECCEEEE
Q 015182 323 WSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDH-PVHMKHPSISAYLGRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 323 ~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~-~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~ 394 (411)
+|..+|+++++ +++|.|++||.||++++|.+.++..+... +... .-.|.|. ...|..|||+||.||
T Consensus 42 at~~ga~~~~~~~~ig~~e~Gk~AD~vviD~~~~~~~~~~~~d~L~----~li~~gd--~r~V~~V~V~G~~VY 109 (109)
T d2i9ua1 42 DKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNLYPEDYDLTERLE----RFIYLGD--DRNIMKRYVCGNEIF 109 (109)
T ss_dssp GGGTTSCEEEEEEEEEECSTTCBCCEEEECCTTSCGGGSCHHHHHH----HHHHHCC--GGGEEEEEETTEEEC
T ss_pred HHhCCceeeccccceeeecCCCEeeEEEEcCCCcchhhhhhhhHHH----HheeeCC--CCceeEEEECCEECC
Confidence 48899999999 88999999999999999987654333110 0000 1112221 346999999999997
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=98.01 E-value=3.3e-06 Score=67.05 Aligned_cols=68 Identities=28% Similarity=0.422 Sum_probs=55.8
Q ss_pred ccc-CCccEEEEcCCC--------eeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEcCcccCC-CCCcccc
Q 015182 340 AIG-NHADLVVWEPEA--------EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA-ACGSPIL 409 (411)
Q Consensus 340 ~~G-~~ADlvv~d~~~--------~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~g~~~~~-~~g~~~~ 409 (411)
-|| -+||+.++++.. .+++..+ .+++... ++||+|.++++.|..|+++|++||++|++... ..|++|.
T Consensus 57 ~pg~~d~Hih~~~~~~~~~~~~~~~~tIs~~-~~~~~~~-~t~~eg~~~~G~~~~ti~rG~~v~~~g~~~~~~g~G~fi~ 134 (156)
T d2fvka1 57 LPGVSDADLVIWYPDDSKKEYNSKPKLITNK-LMEHNCD-YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLK 134 (156)
T ss_dssp CTTTSBCCEEEECCSSCCCCCTTSCSBCCTG-GGCSSSS-CCTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBCC
T ss_pred cccccccceEEEeeccccccccccceEEehh-hcccccc-cccceeEEEccceEEEEECCEEEEECCEEEecCCCCcccC
Confidence 456 689999999874 3446666 6777777 99999999999999999999999999999865 3687774
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.92 E-value=7.3e-08 Score=70.74 Aligned_cols=64 Identities=19% Similarity=0.088 Sum_probs=46.5
Q ss_pred CCHHHHHHHHhHhHHHHhCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEE
Q 015182 314 VTLEQLASWWSERPAKLAGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNL 392 (411)
Q Consensus 314 l~~~~al~~~T~n~A~~lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~ 392 (411)
+.+++.+...|.++++.+.+ .+.++|++||.|||+|||.+.+.. .+|.- -.-.+..||++||+
T Consensus 38 vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~~~~~~~--------------l~Y~~--g~~~~~~v~~~G~~ 101 (103)
T d2puza1 38 AGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWDIERPAE--------------LVYRI--GFNPLHARIFKGQK 101 (103)
T ss_dssp EEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEECCSSTTH--------------HHHCB--SCCCEEEEEETTEE
T ss_pred cChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEcCCCHHH--------------HHHhh--cCCChhEEEECCEE
Confidence 44555556668889999999 667999999999999999764321 22220 02258999999998
Q ss_pred E
Q 015182 393 V 393 (411)
Q Consensus 393 v 393 (411)
|
T Consensus 102 v 102 (103)
T d2puza1 102 V 102 (103)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=97.58 E-value=0.0029 Score=55.92 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=40.5
Q ss_pred chHHHHHHHH-CCceEEEEeccCCCCC--CCCCCCHHHHHHHHHHHHhCCCcEEEecCCc
Q 015182 82 NASALEALLN-AGVLGLKSFMCPSGIN--DFPMTNASHIKEGLSVLARYKRPLLVHAEME 138 (411)
Q Consensus 82 ~~~~~~~~~~-~g~~~ik~~~~~~~~~--~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 138 (411)
.++++.+.++ .|..|+++...+.... .....++..+..+++.+.++|++|.+|+...
T Consensus 109 a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~e~~lpv~iH~~~~ 168 (325)
T d2dvta1 109 ATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRNP 168 (325)
T ss_dssp HHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred hhhhhhhhhhcccceEEEEeCCCcCCCCCCcccccCcccchHHHHHhhCCceEEEecCCC
Confidence 3556666554 6899999865443211 1133567789999999999999999998754
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.55 E-value=1.2e-05 Score=57.49 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=33.9
Q ss_pred hCC-CCCCcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccC-CceEEeEEEEEEECCEEEE
Q 015182 331 AGQ-VSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYL-GRRLSGKVLATISRGNLVY 394 (411)
Q Consensus 331 lg~-~~~G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~-g~~~~~~v~~ti~~G~~v~ 394 (411)
..+ .+.|+|++||.|||+|||.+.+.. .||. | ...+..||++|++|.
T Consensus 54 ~d~~gr~~tlevGk~ADlviwd~~~~~~--------------L~Y~~G---~n~i~~vi~~G~~V~ 102 (103)
T d2q09a1 54 QDMKGKLVTLRVGMLADFLVWNCGHPAE--------------LSYLIG---VDQLVSRVVNGEETL 102 (103)
T ss_dssp EECTTCEEECCTTSBCCEEEESSSCTTH--------------HHHSCS---CCCEEEEEETTEECC
T ss_pred hhcccceEEecCCCccCEEEEcCCCHHH--------------hhhhcC---CCCceEEEECCEEee
Confidence 345 578999999999999999775422 2222 1 124889999999873
|
| >d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative amidohydrolase LP2961 species: Lactobacillus plantarum [TaxId: 1590]
Probab=97.43 E-value=0.001 Score=58.46 Aligned_cols=53 Identities=11% Similarity=0.168 Sum_probs=39.1
Q ss_pred chHHHHHHHH-CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc
Q 015182 82 NASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 138 (411)
Q Consensus 82 ~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 138 (411)
..+++++.++ .|+.|+|+...+. +. .+++..+..+++.|.++|++|.+|....
T Consensus 104 a~~el~r~~~~~G~~Gi~~~~~~~---~~-~~~dp~~~pi~~~~~e~~lpv~~H~~~~ 157 (306)
T d2f6ka1 104 AVKTVQQALDQDGALGVTVPTNSR---GL-YFGSPVLERVYQELDARQAIVALHPNEP 157 (306)
T ss_dssp HHHHHHHHHHTSCCSEEEEESEET---TE-ETTCGGGHHHHHHHHTTTCEEEEECCCC
T ss_pred HHHHHHHHHhcccceEEEecCccc---cc-cCCCccchHHHHHHHHcCCceEeccCCC
Confidence 3456666554 6999999865443 22 2456678999999999999999996553
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=96.86 E-value=6.1e-05 Score=57.46 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHhCC-CCCCcccccCCccEEEEcCCC
Q 015182 327 PAKLAGQ-VSKGAIAIGNHADLVVWEPEA 354 (411)
Q Consensus 327 ~A~~lg~-~~~G~I~~G~~ADlvv~d~~~ 354 (411)
.|+++.+ +++|.+++||.|||+|+|++.
T Consensus 58 ga~v~d~~d~lg~F~~GkEADfvVlD~~~ 86 (140)
T d2ooda1 58 GVEITHIKDRIIVFEPGKEADFVALDPNG 86 (140)
T ss_dssp TCEEEEEEEEEEECCTTSBCCEEEECTTC
T ss_pred CceEEecCCceEeccCCCeecEEEECCCC
Confidence 6788888 779999999999999999874
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.60 E-value=0.0018 Score=45.71 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=39.2
Q ss_pred HhHHHHhCC-CC---CCcccccCCccEEEEcCCC-eeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 325 ERPAKLAGQ-VS---KGAIAIGNHADLVVWEPEA-EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 325 ~n~A~~lg~-~~---~G~I~~G~~ADlvv~d~~~-~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
.++++.+.| +. .|+|++|+.||++||+... ++...+. . ..-..+. ..-.+.+|+++|+ +|.
T Consensus 35 ~~a~~~~~L~~~~y~sGtL~vG~~ADiTIf~l~~g~~~~~Ds-~-------G~~~~g~-~~L~P~~tI~~G~-vyd 100 (101)
T d2icsa1 35 GSAKETIHLEPGTYVSATLEIGKDADLTIFTIQAEEKTLTDS-N-------GLTRVAK-EQIRPIKTIIGGQ-IYD 100 (101)
T ss_dssp CCEEEEEECCTTCEEEESCCTTSBCCEEEEEEEEEEEEEECT-T-------SCEEEEE-EEEEEEEEEETTE-EEE
T ss_pred ccchheEecCCceeeeeEecCCCeeeEEEEEEecCceEEEeC-C-------CCEEEee-EEEeEEEEEECCE-Eec
Confidence 466777777 32 6999999999999999653 3333322 1 1111111 1336899999999 675
|
| >d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.60 E-value=0.054 Score=47.86 Aligned_cols=160 Identities=15% Similarity=0.091 Sum_probs=89.3
Q ss_pred CCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHH
Q 015182 92 AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171 (411)
Q Consensus 92 ~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~ 171 (411)
.++.|+-+. +... +.+......+..+++.|++.|+.+.+|+.+.... .
T Consensus 172 ~~vvGidl~-G~E~--~~~~~~~~~~~~~f~~ar~~gl~~t~HaGE~~~~-----------------------------~ 219 (349)
T d1a4ma_ 172 KTVVAMDLA-GDET--IEGSSLFPGHVEAYEGAVKNGIHRTVHAGEVGSP-----------------------------E 219 (349)
T ss_dssp TTEEEEEEE-SCTT--STTGGGCHHHHHHHHHHHHHTCEEEEEESSSSCH-----------------------------H
T ss_pred cccccceec-CccC--CCChhhHHHHHHHHHHHHHcCCceeeccCCCCCh-----------------------------H
Confidence 567777653 2221 1111122457788999999999999999764211 1
Q ss_pred HHHHHHHHHhhhccCCCCCCceEEEEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCCh
Q 015182 172 AIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~ 251 (411)
.+...+... +. -+|.|.....++.++++.+++++ |..++||..-.... ..+.++
T Consensus 220 ~i~~ai~~l----------~~-~RIGHG~~l~~d~~l~~~~~~~~--I~lEvCptSN~~~~-----------~~~~~~-- 273 (349)
T d1a4ma_ 220 VVREAVDIL----------KT-ERVGHGYHTIEDEALYNRLLKEN--MHFEVCPWSSYLTG-----------AWDPKT-- 273 (349)
T ss_dssp HHHHHHHTS----------CC-SEEEECGGGGGSHHHHHHHHHTT--CEEEECHHHHHHSS-----------SSCTTS--
T ss_pred HHHHHHHHh----------CC-cccCCceecccCHHHHHHhhhcC--ceEEEccccccccc-----------ccCchh--
Confidence 122333221 21 25777653214557778888876 47788996432211 111121
Q ss_pred hhHHHHHHHHhcCCccEEcCCCCCCChhhhhcccCCccccCCCCchhhhHHHHHHH-HHHhcCCCHHHHHHHHhHhHHHH
Q 015182 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKL 330 (411)
Q Consensus 252 ~~~~~l~~~l~~G~~~~~~sD~~p~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~al~~~T~n~A~~ 330 (411)
...+..++++|++++|+||. |.- | +.+ +..-+. .....+++.+++ +.+..|+-+.
T Consensus 274 --~HP~~~~~~~gv~v~i~TDD-p~~----------f-----~t~-----Ls~Ey~~a~~~~~l~~~~l-~~l~~nsi~~ 329 (349)
T d1a4ma_ 274 --THAVVRFKNDKANYSLNTDD-PLI----------F-----KST-----LDTDYQMTKKDMGFTEEEF-KRLNINAAKS 329 (349)
T ss_dssp --CCHHHHHHHTTCCEEECCBC-TTT----------T-----TCC-----HHHHHHHHHHTTTCCHHHH-HHHHHHHHHT
T ss_pred --hHHHHHHHHCCCeEEEeCCC-ccc----------c-----CCC-----HHHHHHHHHHHhCcCHHHH-HHHHHHHHHH
Confidence 23456678889999999996 321 1 111 111122 223458998885 4556677766
Q ss_pred hCC
Q 015182 331 AGQ 333 (411)
Q Consensus 331 lg~ 333 (411)
-.+
T Consensus 330 sf~ 332 (349)
T d1a4ma_ 330 SFL 332 (349)
T ss_dssp SSC
T ss_pred hCC
Confidence 555
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=95.81 E-value=0.036 Score=49.21 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhCCCcEEEecCCcccchhhhhhccCcCCccccccccCCCCHHHHHHHHHHHHHHHhhhccCCCCCCceEE
Q 015182 116 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH 195 (411)
Q Consensus 116 ~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (411)
....+++.|++.|+++.+|+.+..... + + ..+..++.. . +. .+
T Consensus 202 ~~~~~f~~ar~~gl~it~HaGE~~~~~----------~-----------~-----~~i~~ai~~---l-------~~-~R 244 (357)
T d2amxa1 202 DHKDVYHSVRDHGLHLTVHAGEDATLP----------N-----------L-----NTLYTAINI---L-------NV-ER 244 (357)
T ss_dssp GGHHHHHHHHHTTCEEEEEESCCTTCS----------S-----------S-----HHHHHHHHT---S-------CC-SE
T ss_pred hhHHHHHHHHhcCCcccccccccCCCC----------C-----------h-----HHHHHHHHc---c-------CC-cc
Confidence 367889999999999999997632100 0 0 112222221 1 22 25
Q ss_pred EEcCCChHHHHHHHHHHhHCCCCEEEEcccccccccccccCCCCcceEEcCCCCChhhHHHHHHHHhcCCccEEcCCCCC
Q 015182 196 IVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 275 (411)
Q Consensus 196 i~h~~~~~~~~~~i~~~~~~g~~i~~~~~p~~l~~~~~~~~~~~~~~~~~p~lr~~~~~~~l~~~l~~G~~~~~~sD~~p 275 (411)
|.|......+-++++.+++++ +.+++||..-+... . .+.++ ...+..+++.|++++|+||. |
T Consensus 245 IgHGv~~~~d~~l~~~l~~~~--I~leiCPtSN~~~~-~----------~~~~~----~HP~~~l~~~Gv~v~l~TDD-p 306 (357)
T d2amxa1 245 IGHGIRVSESDELIELVKKKD--ILLEVCPISNLLLN-N----------VKSMD----THPIRKLYDAGVKVSVNSDD-P 306 (357)
T ss_dssp EEECGGGGGCHHHHHHHHHHT--CEEEECHHHHHHTT-S----------SSCST----TCTHHHHHHTTCEEEECCBC-H
T ss_pred cccchheecCHHHHHHHHHhC--ceEEECCcchhhhc-c----------CCCcc----cCHHHHHHHCCCeEEEeCCC-c
Confidence 677653213445667777766 57789996532211 0 11111 12345567889999999996 2
Q ss_pred CChhhhhcccCCccccCCCCchhhhHHHHHH-HHHHhcCCCHHHHHHHHhHhHHHHhCC
Q 015182 276 TVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYGRKYGVTLEQLASWWSERPAKLAGQ 333 (411)
Q Consensus 276 ~~~~~k~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~l~~~~al~~~T~n~A~~lg~ 333 (411)
.- | +.+ ++.-+ ......+++.+++ ..++.|+-+.-.+
T Consensus 307 ~~----------f-----~t~-----ls~ey~~~~~~~~ls~~el-~~l~~nsi~~sF~ 344 (357)
T d2amxa1 307 GM----------F-----LSN-----INDNYEKLYIHLNFTLEEF-MIMNNWAFEKSFV 344 (357)
T ss_dssp HH----------H-----TCC-----HHHHHHHHHHHHCCCHHHH-HHHHHHHHHHCCS
T ss_pred hh----------h-----CCC-----HHHHHHHHHHHcCCCHHHH-HHHHHHHHHHhCC
Confidence 10 1 111 11111 1233458999995 4577778776655
|
| >d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 species: Pseudomonas putida [TaxId: 303]
Probab=95.65 E-value=0.31 Score=39.94 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=32.4
Q ss_pred HHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc
Q 015182 85 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 138 (411)
Q Consensus 85 ~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 138 (411)
...++...+..+++...... .+ ...++..++.+++.+.++++++.+|+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (271)
T d2ffia1 88 TLAEMARLGVRGVRLNLMGQ--DM-PDLTGAQWRPLLERIGEQGWHVELHRQVA 138 (271)
T ss_dssp HHHHHHTTTCCEEECCCSSS--CC-CCTTSTTTHHHHHHHHHHTCEEEECSCTT
T ss_pred HHHHHHHhhhccceeccccc--cC-CCcccHhHHHHHHHHHHhCCCcccccCcc
Confidence 34455555666665443322 11 12345668888999999999999998753
|
| >d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0011 Score=50.03 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=20.6
Q ss_pred hCCCCCCcccccCCccEEEEcCCC
Q 015182 331 AGQVSKGAIAIGNHADLVVWEPEA 354 (411)
Q Consensus 331 lg~~~~G~I~~G~~ADlvv~d~~~ 354 (411)
|..++.|..++||.||++++|++.
T Consensus 61 l~~~~~g~FevGkeaD~ivID~~~ 84 (131)
T d2uz9a1 61 LSHHEFFMFEVGKEFDAILINPKA 84 (131)
T ss_dssp CCTTCEEECCTTSBCCEEEECTTC
T ss_pred hhhccccccccCccccEEEEECCC
Confidence 344679999999999999999874
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=94.30 E-value=0.036 Score=34.94 Aligned_cols=32 Identities=38% Similarity=0.658 Sum_probs=27.0
Q ss_pred cccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEEc
Q 015182 338 AIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396 (411)
Q Consensus 338 ~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~~ 396 (411)
.+..|+.||||++|.+- +|.+|+..|++||..
T Consensus 44 ~f~dg~~a~~Vlld~~l---------------------------~v~~tv~~g~~v~~~ 75 (76)
T d1o12a1 44 RIAEGTRADLVLLDEDL---------------------------NVVMTIKEGEVVFRS 75 (76)
T ss_dssp CCSTTSBCCEEEECTTC---------------------------CEEEEEETTEEEEEC
T ss_pred cccCCccccEEEEcCCc---------------------------eEEEEEeeccEEEec
Confidence 47889999999999551 478999999999974
|
| >d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD species: Pseudomonas fluorescens [TaxId: 294]
Probab=93.79 E-value=0.1 Score=45.36 Aligned_cols=52 Identities=21% Similarity=0.145 Sum_probs=40.4
Q ss_pred hHHHHHHHHCCceEEEEeccCCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEecCCc
Q 015182 83 ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEME 138 (411)
Q Consensus 83 ~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~ 138 (411)
.+++.++.+.|..++|+...+. +. ..++..+..+++.|.++|++|.+|+...
T Consensus 128 ~~el~r~~~~g~~g~~l~~~~~---~~-~~~d~~~~p~~~~~~e~~~pv~iH~~~~ 179 (331)
T d2hbva1 128 CKEASRAVAAGHLGIQIGNHLG---DK-DLDDATLEAFLTHCANEDIPILVHPWDM 179 (331)
T ss_dssp HHHHHHHHHHTCCCEEEESCBT---TB-CTTSHHHHHHHHHHHHTTCCEEEECCSC
T ss_pred hhHHHHhhhhcceeeeeccccc---Cc-ccccchhhHHHHHHhccCCceEEecCCC
Confidence 4566777778999999865433 22 3567889999999999999999998653
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.0041 Score=44.77 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=22.3
Q ss_pred CCceeeccc---ccCCCCCCccCChHHHHHHHHcCCceeEecC
Q 015182 1 MPGLIDVHA---HLDDPGRTEWEGFPSGTKAAAAGGITTLIDM 40 (411)
Q Consensus 1 lPGlID~H~---H~~~~~~~~~~~~~~~~~~a~~~GvTtv~d~ 40 (411)
+|||||+|. |++.|+...+ ..++.|+|++.+-
T Consensus 61 ~PG~ID~H~h~~~~~~p~~~~~--------~~~~~G~~~v~~~ 95 (105)
T d1onwa1 61 CPEILPGNDADLLVMTPELRIE--------QVYARGKLMVKDG 95 (105)
T ss_dssp EESCCTTSBCCEEEECTTCCEE--------EEEETTEEEEETT
T ss_pred eCCEeecccCcceecCCCcchH--------HHhhcceEEeccC
Confidence 599999996 4555554332 2468899998874
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=93.24 E-value=0.0062 Score=44.65 Aligned_cols=16 Identities=13% Similarity=-0.164 Sum_probs=13.4
Q ss_pred CCceeecccccCCCCC
Q 015182 1 MPGLIDVHAHLDDPGR 16 (411)
Q Consensus 1 lPGlID~H~H~~~~~~ 16 (411)
+|||||+|+|+...+.
T Consensus 62 ~PGlid~H~Hl~~~g~ 77 (118)
T d2p9ba1 62 MLEVGKSADLLVLNAN 77 (118)
T ss_dssp ECCTTSBCCEEEESSC
T ss_pred EeeecceeEEEEecCC
Confidence 6999999999976554
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.012 Score=40.42 Aligned_cols=14 Identities=14% Similarity=-0.047 Sum_probs=11.6
Q ss_pred CCceeecccccCCC
Q 015182 1 MPGLIDVHAHLDDP 14 (411)
Q Consensus 1 lPGlID~H~H~~~~ 14 (411)
+|||||.|+|....
T Consensus 52 ~PGlid~hvH~~~~ 65 (85)
T d1yrra1 52 SPTLAAGKVANLTA 65 (85)
T ss_dssp EESCCTTSBCCEEE
T ss_pred EcccEecceeeccc
Confidence 59999999997543
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=82.20 E-value=0.38 Score=33.25 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=27.0
Q ss_pred CcccccCCccEEEEcCCCeeEeCCCCCcccCCCCCCccCCceEEeEEEEEEECCEEEEE
Q 015182 337 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395 (411)
Q Consensus 337 G~I~~G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~ti~~G~~v~~ 395 (411)
..|++|+.||+++++.|+...+ .. .-+|..|+.+|+ +|+
T Consensus 57 PGL~~g~~~d~~~~~~~P~~di-------------~~------~~~v~~v~~~G~-~~~ 95 (96)
T d2qs8a1 57 PSIESGKLADLIAVKGNPIEDI-------------SV------LENVDVVIKDGL-LYE 95 (96)
T ss_dssp ESCCTTSBCCEEEESSCTTTCG-------------GG------GGGEEEEEETTE-EEE
T ss_pred cCccccCcccEEEEcCChhHHh-------------Hh------hcCccEEEECCE-EeC
Confidence 4489999999999998843211 01 124788999997 443
|