Citrus Sinensis ID: 015189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
Protein Sequence
MSLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVDK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHccccccccHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccEEEEEEccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mslslgltltpftspppkthlkipvfrpktplaisssppsfknlqitrcvnensqllpvteakpRWEYLLSTAASLYPLYVTVGGVIaclkpsafgwfvqrgpasysLSLGLIMLAMGLTLELKDLISLFMqrplsilfgcaaqytimptsgVIVSkflglppalSVGLILlsccpggtasnVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIlagtyvpvdaVKLSISTLQIVVAPVLLgsymqsafpaavkvvtpFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAicgfkepqrRAISIEVGMQNSSLGVVLATAHFtssmvalppAMSAVIMNIMGSTLGFFwryidpsdsktspktvdk
Flexible Loop (DISEMBL)
mslslgltltpftspppkthlKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRyidpsdsktspktvdk
Low Complexity Region (SEG)
MSLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTsdlslisriksilsGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVDK
Disordered region (IsUnstruct)
******************************************NLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYI**************
Disordered Region (DISOPRED)
*******************************************************************YLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWR****************
Disordered Region (DISEMBL)
MSLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPS***********
Disordered Region (DISPRO)
*SLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQIT***NENSQLL***EAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	411	2.2.26 [Sep-21-2011]
Q93YR2	401	Probable sodium/metabolit	yes	no	0.800	0.820	0.400	4e-60
Q5VRB2	419	Probable sodium/metabolit	no	no	0.768	0.754	0.395	2e-56
Q1EBV7	409	Sodium/pyruvate cotranspo	no	no	0.766	0.770	0.392	5e-55
Q7XVB3	406	Probable sodium/metabolit	no	no	0.725	0.733	0.406	3e-54
O34524	321	Uncharacterized sodium-de	yes	no	0.708	0.906	0.370	2e-42
Q6K739	423	Probable sodium/metabolit	no	no	0.673	0.654	0.359	2e-39
Q8VYY4	409	Probable sodium/metabolit	no	no	0.744	0.748	0.334	8e-38
Q8RXE8	431	Probable sodium/metabolit	no	no	0.715	0.682	0.337	8e-36
F4JPW1	407	Probable sodium/metabolit	no	no	0.729	0.737	0.322	1e-33
Q650U0	401	Probable sodium/metabolit	no	no	0.751	0.770	0.320	4e-33

>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1

 Score =  232 bits (592), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 211/367 (57%), Gaps = 38/367 (10%)

Query: 48  RCVNENSQLLPVTEAKP--RW-EYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPA 104
           RC   +S  LP  + K    W E++    ++ +P++V++G ++  ++PS F W     P 
Sbjct: 70  RC-GISSNDLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTFNWVT---PN 125

Query: 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPA 164
              + L + ML MG+TL L DL    +  P  +  G   QY++MP S   VSK L LPP 
Sbjct: 126 WTIVGLTITMLGMGMTLTLDDLRGA-LSMPKELFAGFLLQYSVMPLSAFFVSKLLNLPPH 184

Query: 165 LSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPV 224
            + GLIL+ CCPGGTASN+VT IARG+V LS++MT  +T+ AV+ TPLLT  LA  Y+ V
Sbjct: 185 YAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQYITV 244

Query: 225 DAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVR 284
           DA+ L +STLQ+V+ PVL G+++   F   VK V+P  P  AV   ++L           
Sbjct: 245 DALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILC---------- 294

Query: 285 LKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQR 344
                 G A+  + S I     ++SG+   ++L+  LLH +GF  GYL + I G      
Sbjct: 295 ------GYAIGQNASAI-----LMSGK--QVVLASCLLHISGFLFGYLFSRILGIDVASS 341

Query: 345 RAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKT 404
           R ISIEVGMQNS LGVVLAT HF + + A+P A+S+V  +I+GS L   WR       ++
Sbjct: 342 RTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWR-------RS 394

Query: 405 SPKTVDK 411
           +PK ++ 
Sbjct: 395 APKQLED 401

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/344 (39%), Positives = 198/344 (57%), Gaps = 28/344 (8%)

Query: 65  RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELK 124
           ++E ++    +L+P++V +G +I   KPS   W        +++ LG +ML+MGLTL  +
Sbjct: 102 QYEKIVELLTTLFPVWVILGTIIGIYKPSMVTWLETD---LFTVGLGFLMLSMGLTLTFE 158

Query: 125 DLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184
           D     M+ P ++  G  AQY I P  G  ++  L L   L+ GLIL+SCCPGG ASNV 
Sbjct: 159 DFRRC-MRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLSAPLATGLILVSCCPGGQASNVA 217

Query: 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLG 244
           T I++G+V LS++MT C+T+GA++ TPLLTK+LAG  VPVDA  L+IST Q+V+ P ++G
Sbjct: 218 TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLLPTIVG 277

Query: 245 SYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 304
                 FP   + +   TPL  VL+++LL  S                        I ++
Sbjct: 278 VLAHEYFPKFTERIISITPLIGVLLTTLLCASP-----------------------IGQV 314

Query: 305 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLAT 364
             +L  + G +I+ V LLH A F +GY  + +  F E   R ISIE GMQ+S+LG +LA 
Sbjct: 315 SEVLKAQGGQLIIPVALLHVAAFALGYWLSKVSSFGESTSRTISIECGMQSSALGFLLAQ 374

Query: 365 AHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID-PSDSKTSPK 407
            HFT+ +VA+P A+S V M + GS L  FWR    P++ K   K
Sbjct: 375 KHFTNPLVAVPSAVSVVCMALGGSALAVFWRNRGLPANDKDDFK 418

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1

 Score =  215 bits (547), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 135/344 (39%), Positives = 197/344 (57%), Gaps = 29/344 (8%)

Query: 65  RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELK 124
           ++E ++    +L+PL+V +G ++   KPS   W        ++L LG +ML+MGLTL  +
Sbjct: 93  QYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETD---LFTLGLGFLMLSMGLTLTFE 149

Query: 125 DLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184
           D     ++ P ++  G  AQY I P  G +++  L L   L+ GLIL+SCCPGG ASNV 
Sbjct: 150 DFRRC-LRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQASNVA 208

Query: 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLG 244
           T I++G+V LS++MT C+T+GA++ TPLLTK+LAG  VPVDA  L++ST Q+V+ P ++G
Sbjct: 209 TYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIG 268

Query: 245 SYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 304
                 FP     +   TPL  V++++LL  S                        I ++
Sbjct: 269 VLANEFFPKFTSKIITVTPLIGVILTTLLCASP-----------------------IGQV 305

Query: 305 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLAT 364
             +L  +   +IL V LLH A F +GY  +    F E   R ISIE GMQ+S+LG +LA 
Sbjct: 306 ADVLKTQGAQLILPVALLHAAAFAIGYWISKF-SFGESTSRTISIECGMQSSALGFLLAQ 364

Query: 365 AHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID-PSDSKTSPK 407
            HFT+ +VA+P A+S V M + GS L  FWR +  P+D K   K
Sbjct: 365 KHFTNPLVAVPSAVSVVCMALGGSGLAVFWRNLPIPADDKDDFK 408

Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2

 Score =  213 bits (541), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/325 (40%), Positives = 187/325 (57%), Gaps = 27/325 (8%)

Query: 77  YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLS 136
           +P++V     +A  +P AF W     P +  + +   ML MG+TL L DL +  +  P  
Sbjct: 106 FPVWVASACAVALWRPPAFLWV---SPMAQIVGISFTMLGMGMTLTLDDLKTALLM-PKE 161

Query: 137 ILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSI 196
           +  G   QY++MP SG ++SK L LP   + GLIL+SCCPGGTASN+VT +ARG+V LS+
Sbjct: 162 LASGFLLQYSVMPLSGFLISKLLNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVALSV 221

Query: 197 VMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVK 256
           +MT  +T  A   TPLLT  LAG YV VD + L +ST Q+V+APVLLG+ +       V+
Sbjct: 222 LMTAASTFAAAFLTPLLTSKLAGQYVAVDPMGLFVSTSQVVLAPVLLGALLNQYCNGLVQ 281

Query: 257 VVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVII 316
           +V+P  P  AV   ++L  +  ++N          A L+S L                ++
Sbjct: 282 LVSPLMPFIAVATVAVLCGNAIAQN--------ASAILSSGLQ---------------VV 318

Query: 317 LSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPP 376
           +SV  LH +GFF GY+ +   G      R ISIEVGMQNS LGVVLA+ HF + + A+P 
Sbjct: 319 MSVCWLHASGFFFGYVLSRTIGIDISSSRTISIEVGMQNSVLGVVLASKHFGNPLTAVPC 378

Query: 377 AMSAVIMNIMGSTLGFFWRYIDPSD 401
           A+S+V  ++ GS L   WR + P+D
Sbjct: 379 AVSSVCHSVYGSLLAGIWRSLPPND 403

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O34524|YOCS_BACSU Uncharacterized sodium-dependent transporter YocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 177/324 (54%), Gaps = 33/324 (10%)

Query: 73  AASLYPLYVTVGGVIACLKPSAFGWFVQRGPASY-SLSLGLIMLAMGLTLELKDLISLFM 131
           A   + ++V V  V+    PS F W      +SY ++ LG+IM  MGLTL+  D   L +
Sbjct: 11  AGQTFGIWVIVFAVLGFSFPSLFTWI-----SSYITIFLGIIMFGMGLTLQADDFKEL-V 64

Query: 132 QRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGD 191
           ++P  ++ G  AQYTIMP     ++  L LP  ++VG+IL+ CCPGGTASNV+T +A+G+
Sbjct: 65  RKPWQVIIGVIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTFLAKGN 124

Query: 192 VPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAF 251
             LS+ +T  +TL A + TPLL  + A  ++PV    L IS LQ V+ P++ G  ++  F
Sbjct: 125 TALSVAVTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKMFF 184

Query: 252 PAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGE 311
              V       PL +V+    +  +V S N   L  S                       
Sbjct: 185 RKQVAKAVHALPLVSVIGIVAIVSAVVSGNRENLLQS----------------------- 221

Query: 312 LGVIILSVLLLHFA-GFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSS 370
            G++I SV++LH   G+ +G+L A +     P ++AI+IEVGMQNS LG  LATAHF S 
Sbjct: 222 -GLLIFSVVILHNGIGYLLGFLCAKLLKMDYPSQKAIAIEVGMQNSGLGAALATAHF-SP 279

Query: 371 MVALPPAMSAVIMNIMGSTLGFFW 394
           + A+P A+ +V  N+ GS L  +W
Sbjct: 280 LSAVPSAIFSVWHNLSGSMLATYW 303

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 170/306 (55%), Gaps = 29/306 (9%)

Query: 91  KPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPT 150
            P+ F W  +     Y+ +LG IML++G+ L + D  +L  +RP+ +  G  AQY + P 
Sbjct: 122 NPATFSWVSKE---YYAPALGGIMLSIGIKLSIDDF-ALAFKRPVPLTIGYMAQYIVKPL 177

Query: 151 SGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFT 210
            GV++++  G+P A   G +L  C  G   S+  + +++GDV LSI++T C+T+ +V+ T
Sbjct: 178 MGVLIARAFGMPSAFFAGFVLTCCVSGAQLSSYASFLSKGDVALSILLTSCSTISSVVVT 237

Query: 211 PLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMS 270
           P+LT +L G+ VPVD + ++ S LQ+V+ PV LG  + +   A V V+ P  P  A+L +
Sbjct: 238 PVLTGLLIGSVVPVDGIAMAKSILQVVLVPVTLGLLLNTYAKAVVNVIQPVMPFVAMLCT 297

Query: 271 SLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVG 330
           SL                 +G+ L      I+R K ILS E  +++L ++  H A F VG
Sbjct: 298 SL----------------CIGSPLA-----INRSK-ILSSEGFLLLLPIVTFHIAAFIVG 335

Query: 331 YLSAAICGFK--EPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGS 388
           Y  + +   +  EP  R IS+  GMQ+S+L  +LAT  F  S  A+P A S VIM I G 
Sbjct: 336 YWISKLPMLRQEEPVCRTISVCTGMQSSTLAGLLAT-QFLGSSQAVPAACSVVIMAIFGL 394

Query: 389 TLGFFW 394
           TL  +W
Sbjct: 395 TLASYW 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VYY4|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1

 Score =  158 bits (399), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 165/341 (48%), Gaps = 35/341 (10%)

Query: 63  KPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLE 122
           KP     +  A S+ P  V    ++A + P +F WF  R    +  +LG +M A+G+   
Sbjct: 87  KPSIVDRMKKANSILPHVVLASTILALIYPPSFTWFTSR---YFVPALGFLMFAVGINSN 143

Query: 123 LKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS----KFLGLPPALSVGLILLSCCPGG 178
            KD +  F +RP +IL G   QY + P  G I          LP  +  G++L+SC  G 
Sbjct: 144 EKDFLEAF-KRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGA 202

Query: 179 TASNVVTLIARGDV-PLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIV 237
             SN  T +    + PLSIVMT  +T  AVL TP+L+ +L G  +PVD   +  S LQ+V
Sbjct: 203 QLSNYATFLTDPALAPLSIVMTSLSTATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVV 262

Query: 238 VAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSD 297
           +AP+  G  +   FP     + PF P+ +VL +   AC              VGA L  +
Sbjct: 263 IAPIAAGLLLNKLFPKVSNAIRPFLPILSVLDT---AC-------------CVGAPLALN 306

Query: 298 LSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQ----RRAISIEVGM 353
                 I S++S     I+L V + H + F  GY          P     +R +S E GM
Sbjct: 307 ------INSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGM 360

Query: 354 QNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFW 394
           Q+S L + LAT  F   +V +PPA+S V+M++MG TL   W
Sbjct: 361 QSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIW 401

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1

 Score =  151 bits (382), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 109/323 (33%), Positives = 173/323 (53%), Gaps = 29/323 (8%)

Query: 74  ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQR 133
           ++L P  V +  V A   P +F W  +     Y+ +LG IML++G+ L + D  +L  +R
Sbjct: 112 SALLPFVVALTAVAALSYPPSFTWVSKD---LYAPALGGIMLSIGIQLSVDDF-ALAFKR 167

Query: 134 PLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVP 193
           P+ +  G  AQY + P  GV+V+   G+P     G IL  C  G   S+  + +++ DV 
Sbjct: 168 PVPLSVGFVAQYVLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA 227

Query: 194 LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPA 253
           +SI++T  TT+ +V+FTPLL+ +L G+ VPVDAV +S S LQ+V+ P+ LG  + +    
Sbjct: 228 MSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKP 287

Query: 254 AVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELG 313
            V ++ P  P  A++ +SL                 +G+ L+ + S       ILS E  
Sbjct: 288 VVTLLQPVMPFVAMVCTSL----------------CIGSPLSINRS------QILSAEGL 325

Query: 314 VIILSVLLLHFAGFFVGYLSAAICGFKEPQR--RAISIEVGMQNSSLGVVLATAHFTSSM 371
            +I+ ++  H   F +GY  + I G ++ +   R IS+  GMQ+S+L  +LA+  F  S 
Sbjct: 326 GLIVPIVTFHAVAFALGYWFSKIPGLRQEEEVSRTISLCTGMQSSTLAGLLAS-QFLGSS 384

Query: 372 VALPPAMSAVIMNIMGSTLGFFW 394
            A+P A S V+M IMG  L  FW
Sbjct: 385 QAVPAACSVVVMAIMGLCLASFW 407

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 159/335 (47%), Gaps = 35/335 (10%)

Query: 70  LSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISL 129
           L  A S  P  + +  ++A + P +F WF    P  +   LG +M A+G+    +D +  
Sbjct: 95  LKQAYSFIPHGILLSTILALVYPPSFTWF---KPRYFVPGLGFMMFAVGINSNERDFLEA 151

Query: 130 FMQRPLSILFGCAAQYTIMP----TSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVT 185
            ++RP +I  G   QY I P      GVI      LP ++  G++L+SC  G   SN  T
Sbjct: 152 -LKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTT 210

Query: 186 LIARGDVP-LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLG 244
            +    +  LSIVMT  +T  AVL TP+L+ +L G  +PVD   +  S LQ+V+ P+  G
Sbjct: 211 FLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKLPVDVFGMISSILQVVITPIAAG 270

Query: 245 SYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 304
             +   FP     + PF P   V+    ++C              +GA L  +      I
Sbjct: 271 LLLNRLFPRLSNAIKPFLPALTVID---MSC-------------CIGAPLALN------I 308

Query: 305 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQ----RRAISIEVGMQNSSLGV 360
            SILS     I+  V+  H   F  GY        K P     +R IS E GMQ+S L +
Sbjct: 309 DSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQSSLLAL 368

Query: 361 VLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWR 395
            LAT  F   +V +PPA+S V+M++MG +L   W+
Sbjct: 369 ALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWK 403

Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1

 Score =  142 bits (359), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 164/346 (47%), Gaps = 37/346 (10%)

Query: 59  VTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMG 118
           V E+K     +L +A ++ P  V    ++A + P +F WF  R    Y+ +LG +M A+G
Sbjct: 77  VEESKVDLLKILKSANTIIPHVVLGSTILALVYPPSFTWFTTR---YYAPALGFLMFAVG 133

Query: 119 LTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKF----LGLPPALSVGLILLSC 174
           +   +KD I   +QRP +I  G   Q+ I P  G +          LP AL  G++L+SC
Sbjct: 134 VNSSVKDFIEA-IQRPDAIAAGYVGQFIIKPFLGFLFGTLAVTIFNLPTALGAGIMLVSC 192

Query: 175 CPGGTASNVVTLIARGDV-PLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIST 233
             G   SN  T +    + PLSIVMT  +T  AV  TP L+  L G  +PVD   +  S 
Sbjct: 193 VSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFVTPTLSYFLIGKKLPVDVKGMMSSI 252

Query: 234 LQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAA 293
           +QIVVAP+  G  +    P     + PF P  +V +++L   S  + N            
Sbjct: 253 VQIVVAPIAAGLLLNRYLPRLCSAIQPFLPPLSVFVTALCVGSPLAIN------------ 300

Query: 294 LTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQ-----RRAIS 348
                     IK++LS      +L +   H + F  GY  A    F+E       +R +S
Sbjct: 301 ----------IKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTW-FRESADVKALQRTVS 349

Query: 349 IEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFW 394
            E GMQ+S L + LA   F   +V +PPA+S V+M++MG  L   W
Sbjct: 350 FETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVW 395

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
255571016	412	sodium-bile acid cotransporter, putative	0.970	0.968	0.782	1e-171
225448132	410	PREDICTED: uncharacterized sodium-depend	0.980	0.982	0.723	1e-163
297739530	346	unnamed protein product [Vitis vinifera]	0.824	0.979	0.790	1e-150
449518811	404	PREDICTED: probable sodium/metabolite co	0.956	0.972	0.669	1e-144
449431852	404	PREDICTED: probable sodium/metabolite co	0.956	0.972	0.666	1e-143
449432938	422	PREDICTED: probable sodium/metabolite co	0.868	0.845	0.670	1e-128
449518813	404	PREDICTED: probable sodium/metabolite co	0.868	0.883	0.670	1e-128
242084940	403	hypothetical protein SORBIDRAFT_08g00452	0.805	0.821	0.668	1e-123
224034585	396	unknown [Zea mays]	0.807	0.838	0.656	1e-123
226496369	395	bile acid sodium symporter/ transporter	0.807	0.840	0.653	1e-122

>gi|255571016|ref|XP_002526459.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223534239|gb|EEF35954.1| sodium-bile acid cotransporter, putative [Ricinus communis]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 313/400 (78%), Positives = 347/400 (86%), Gaps = 1/400 (0%)

Query: 3   LSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQ-ITRCVNENSQLLPVTE 61
           +SL  TLT FT+   +T+ K  +F P+      SSPP F+ L  + R V+E+S  LP TE
Sbjct: 1   MSLSSTLTHFTTFSQRTYFKSTLFTPRKQQFTISSPPKFRKLATVVRSVHEDSGYLPATE 60

Query: 62  AKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTL 121
           AKPRWE +LSTAASLYPLYVTVGGV+ACLKP  F WFV RGPASYSLSLGLIML+MG+TL
Sbjct: 61  AKPRWENVLSTAASLYPLYVTVGGVVACLKPDTFAWFVNRGPASYSLSLGLIMLSMGITL 120

Query: 122 ELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTAS 181
           ELKDLI+LFMQRPLSILFGC AQY+IMP  G+IVSK LGL P+LSVGLILL CCPGGTAS
Sbjct: 121 ELKDLIALFMQRPLSILFGCVAQYSIMPAFGMIVSKSLGLSPSLSVGLILLGCCPGGTAS 180

Query: 182 NVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPV 241
           NVVTLIA+GDVPLSIVMT+CTTLGAVL TPLLTKILAGTYVPVDA+KLSISTLQ+VVAP+
Sbjct: 181 NVVTLIAQGDVPLSIVMTVCTTLGAVLLTPLLTKILAGTYVPVDALKLSISTLQVVVAPI 240

Query: 242 LLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLI 301
           LLGSY+QS FPAAVK VTPF PLFAVL SSLLACSVFSEN+VRLKSS+VGA+L    S +
Sbjct: 241 LLGSYLQSTFPAAVKAVTPFAPLFAVLASSLLACSVFSENVVRLKSSMVGASLPPGSSPL 300

Query: 302 SRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVV 361
             I+SILSGELGVIILSVLLLH AGFFVGY+SAAI GFKE +RRAISIEVGMQNSSLGVV
Sbjct: 301 LVIQSILSGELGVIILSVLLLHVAGFFVGYISAAIGGFKERERRAISIEVGMQNSSLGVV 360

Query: 362 LATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSD 401
           LAT+HFTS +VALPPAMSAVIMNIMGSTLGF WR+IDPSD
Sbjct: 361 LATSHFTSPLVALPPAMSAVIMNIMGSTLGFIWRHIDPSD 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448132|ref|XP_002263202.1| PREDICTED: uncharacterized sodium-dependent transporter yocS-like [Vitis vinifera]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 293/405 (72%), Positives = 337/405 (83%), Gaps = 2/405 (0%)

Query: 3   LSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEA 62
           +SL L LTPF S  P++H +IP+  P+ P    S       L   R V E     P+T +
Sbjct: 1   MSLSLCLTPFASSSPQSHPRIPLPIPRNPTIFPSR--KLSKLHPIRSVQEQFDHQPLTRS 58

Query: 63  KPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLE 122
            PRWE +LSTAASLYPLYVT GGV+AC+KPS F WFV++GPASYSLSLGLIML+MG+TL+
Sbjct: 59  TPRWENMLSTAASLYPLYVTAGGVVACVKPSVFAWFVEKGPASYSLSLGLIMLSMGITLK 118

Query: 123 LKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN 182
           L+D  +L +QRP SILFGC AQYTIMP+ G+I+SK LGL P+L+VGLILL+CCPGGTASN
Sbjct: 119 LRDFFNLLIQRPFSILFGCVAQYTIMPSFGLIISKALGLSPSLTVGLILLACCPGGTASN 178

Query: 183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVL 242
           VVTLIARGDVPLSIVMT+CTT GAVL TPLLTKILAG YVPV+A  LSISTLQ+VV P+L
Sbjct: 179 VVTLIARGDVPLSIVMTICTTFGAVLLTPLLTKILAGAYVPVNAANLSISTLQVVVGPIL 238

Query: 243 LGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLIS 302
           LGSY+QS FP  VK VTPF PLFAVL SSLLACSVFSEN+VRLKSS+V A+L SD+S + 
Sbjct: 239 LGSYIQSRFPELVKAVTPFAPLFAVLASSLLACSVFSENVVRLKSSMVSASLASDVSPLL 298

Query: 303 RIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVL 362
            I+S+LSGELG++ILSVLLLHFAGFFVGY +AAI GF E QRRAIS+EVGMQNSSLGVVL
Sbjct: 299 CIQSLLSGELGLVILSVLLLHFAGFFVGYTAAAIAGFGERQRRAISVEVGMQNSSLGVVL 358

Query: 363 ATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPK 407
           AT+HF S MVALPPAMSAVIMNIMGS+LGFFWRYIDPSDSK +PK
Sbjct: 359 ATSHFPSPMVALPPAMSAVIMNIMGSSLGFFWRYIDPSDSKNNPK 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739530|emb|CBI29712.3| unnamed protein product [Vitis vinifera]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/339 (79%), Positives = 304/339 (89%)

Query: 69  LLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLIS 128
           +LSTAASLYPLYVT GGV+AC+KPS F WFV++GPASYSLSLGLIML+MG+TL+L+D  +
Sbjct: 1   MLSTAASLYPLYVTAGGVVACVKPSVFAWFVEKGPASYSLSLGLIMLSMGITLKLRDFFN 60

Query: 129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIA 188
           L +QRP SILFGC AQYTIMP+ G+I+SK LGL P+L+VGLILL+CCPGGTASNVVTLIA
Sbjct: 61  LLIQRPFSILFGCVAQYTIMPSFGLIISKALGLSPSLTVGLILLACCPGGTASNVVTLIA 120

Query: 189 RGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQ 248
           RGDVPLSIVMT+CTT GAVL TPLLTKILAG YVPV+A  LSISTLQ+VV P+LLGSY+Q
Sbjct: 121 RGDVPLSIVMTICTTFGAVLLTPLLTKILAGAYVPVNAANLSISTLQVVVGPILLGSYIQ 180

Query: 249 SAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSIL 308
           S FP  VK VTPF PLFAVL SSLLACSVFSEN+VRLKSS+V A+L SD+S +  I+S+L
Sbjct: 181 SRFPELVKAVTPFAPLFAVLASSLLACSVFSENVVRLKSSMVSASLASDVSPLLCIQSLL 240

Query: 309 SGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT 368
           SGELG++ILSVLLLHFAGFFVGY +AAI GF E QRRAIS+EVGMQNSSLGVVLAT+HF 
Sbjct: 241 SGELGLVILSVLLLHFAGFFVGYTAAAIAGFGERQRRAISVEVGMQNSSLGVVLATSHFP 300

Query: 369 SSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPK 407
           S MVALPPAMSAVIMNIMGS+LGFFWRYIDPSDSK +PK
Sbjct: 301 SPMVALPPAMSAVIMNIMGSSLGFFWRYIDPSDSKNNPK 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518811|ref|XP_004166429.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 271/405 (66%), Positives = 320/405 (79%), Gaps = 12/405 (2%)

Query: 5   LGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQIT-RCVNENSQLLPVTEAK 63
           + L LTPF SP         + RP   L     PP      +T R V +N++L   +   
Sbjct: 4   ISLQLTPFISPL--------IHRPNLRLHRPPIPPLSPPRLLTVRSVQQNNELPSPSPPP 55

Query: 64  PR--WEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTL 121
                +  LSTAASLYPLYVT GG++ACL+PS F WFVQRGP+SYSLSLGLIMLAMGLTL
Sbjct: 56  KPTGLDDFLSTAASLYPLYVTAGGIVACLEPSTFSWFVQRGPSSYSLSLGLIMLAMGLTL 115

Query: 122 ELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTAS 181
           E+KDL +LFMQRPLSILFGC AQYTIMP S V++ K LGL  +L  GL+LL CCPGG+AS
Sbjct: 116 EIKDLFNLFMQRPLSILFGCVAQYTIMPASAVLIGKLLGLSQSLLFGLVLLGCCPGGSAS 175

Query: 182 NVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPV 241
           NVVTLIA+GDVPLSIVMT+CTTLGAV+FTP LTK L G Y+PVDA +LS+STLQ+VVAP+
Sbjct: 176 NVVTLIAQGDVPLSIVMTVCTTLGAVIFTPFLTKFLVGAYIPVDAAQLSLSTLQVVVAPI 235

Query: 242 LLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLI 301
           LLGS +Q AFP+ VK+V PF PL AVL SSLLA SVFSEN++R+KSS+V A L SD SL 
Sbjct: 236 LLGSCLQKAFPSLVKLVLPFAPLVAVLTSSLLASSVFSENVIRIKSSMVSATLASDASLW 295

Query: 302 SRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVV 361
           + +KSILSGELGV+ILSV  LHFAGFFVGY++AAICGF+E +RR IS++VGMQNSSLGVV
Sbjct: 296 TVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVV 355

Query: 362 LATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS-KTS 405
           LA +HF+S+MVALPPA+SAVIMN+MGSTLGF W+YI PSD  KTS
Sbjct: 356 LAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTS 400

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431852|ref|XP_004133714.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/405 (66%), Positives = 318/405 (78%), Gaps = 12/405 (2%)

Query: 5   LGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQIT-RCVNENSQ--LLPVTE 61
           + L LTPF SP         + RP   L     PP      +T R V +N++        
Sbjct: 4   ISLQLTPFISPL--------IHRPNLRLHRPPIPPLSPPRSLTVRSVQQNNEHPSPSPPP 55

Query: 62  AKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTL 121
                +  LSTAASLYPLYVT GG++ACL+PS F WFVQRGP+SYSLSLGLIMLAMGLTL
Sbjct: 56  KPTGLDDFLSTAASLYPLYVTAGGIVACLEPSTFSWFVQRGPSSYSLSLGLIMLAMGLTL 115

Query: 122 ELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTAS 181
           E+KDL +LFMQRPLSILFGC AQYTIMP S V++ K LGL  +L  GL+LL CCPGG+AS
Sbjct: 116 EIKDLFNLFMQRPLSILFGCVAQYTIMPASAVLIGKLLGLSQSLLFGLVLLGCCPGGSAS 175

Query: 182 NVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPV 241
           NVVTLIA+GDVPLSIVMT+CTTLGAV+FTP LTK L G Y+PVDA +LS+STLQ+VVAP+
Sbjct: 176 NVVTLIAQGDVPLSIVMTVCTTLGAVIFTPFLTKFLVGAYIPVDAAQLSLSTLQVVVAPI 235

Query: 242 LLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLI 301
           LLGS +Q AFP+ VK+V PF PL AVL SSLLA SVFSEN++R+KSS+V A L SD SL 
Sbjct: 236 LLGSCLQKAFPSLVKLVLPFAPLVAVLTSSLLASSVFSENVIRIKSSMVSATLASDASLW 295

Query: 302 SRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVV 361
           + +KSILSGELGV+ILSV  LHFAGFFVGY++AAICGF+E +RR IS++VGMQNSSLGVV
Sbjct: 296 TVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVV 355

Query: 362 LATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS-KTS 405
           LA +HF+S+MVALPPA+SAVIMN+MGSTLGF W+YI PSD  KTS
Sbjct: 356 LAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTS 400

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432938|ref|XP_004134255.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 291/361 (80%), Gaps = 4/361 (1%)

Query: 44  LQITRCVNENSQLLPV----TEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFV 99
           L I R +  +++LLP+     +   R    +STAA L+PLY+T GG++AC+KPS F WFV
Sbjct: 60  LAIVRSLQRDTELLPLPPPPQKQTDRLAKFVSTAAGLFPLYITSGGIVACMKPSTFSWFV 119

Query: 100 QRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL 159
           QRGP SYSL+L L+MLAMGLTLELKDL +LFMQRPLSIL+ C AQYTIMP  G  + KFL
Sbjct: 120 QRGPGSYSLALSLVMLAMGLTLELKDLFNLFMQRPLSILYLCVAQYTIMPVVGAAIGKFL 179

Query: 160 GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219
           GL PALSVGLILL CCPGG AS+VVTLIARGDVPLSI+MT+CTTL AV+ TP LT+ L G
Sbjct: 180 GLAPALSVGLILLGCCPGGIASSVVTLIARGDVPLSIIMTVCTTLQAVVLTPFLTRTLVG 239

Query: 220 TYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFS 279
             +PVDA+KLS+STLQ+VV P+L+GSY+Q   P  VK + PF+PLFAVL SSLLACSVFS
Sbjct: 240 ASIPVDAIKLSLSTLQVVVVPILIGSYLQKTCPGVVKRIIPFSPLFAVLTSSLLACSVFS 299

Query: 280 ENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGF 339
           EN+VR KSS+V ++L+ D S    IK++LS ELG++IL+V  LH AGF VGY  AAI GF
Sbjct: 300 ENIVRFKSSLVSSSLSFDASPWIAIKTMLSEELGIVILAVFSLHLAGFVVGYTIAAIGGF 359

Query: 340 KEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDP 399
           +E +RRAIS+EVGMQNSSLGVVLATAHF+S+MVALP AMSAVIMN+MGS+LG FWR I+P
Sbjct: 360 RERERRAISLEVGMQNSSLGVVLATAHFSSAMVALPAAMSAVIMNMMGSSLGSFWRNIEP 419

Query: 400 S 400
           S
Sbjct: 420 S 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518813|ref|XP_004166430.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 291/361 (80%), Gaps = 4/361 (1%)

Query: 44  LQITRCVNENSQLLPV----TEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFV 99
           L I R +  +++LLP+     +   R    +STAA L+PLY+T GG++AC+KPS F WFV
Sbjct: 42  LAIVRSLQRDTELLPLPPPPQKQTDRLAKFVSTAAGLFPLYITSGGIVACMKPSTFSWFV 101

Query: 100 QRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL 159
           QRGP SYSL+L L+MLAMGLTLELKDL +LFMQRPLSIL+ C AQYTIMP  G  + KFL
Sbjct: 102 QRGPGSYSLALSLVMLAMGLTLELKDLFNLFMQRPLSILYLCVAQYTIMPVVGAAIGKFL 161

Query: 160 GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219
           GL PALSVGLILL CCPGG AS+VVTLIARGDVPLSI+MT+CTTL AV+ TP LT+ L G
Sbjct: 162 GLAPALSVGLILLGCCPGGIASSVVTLIARGDVPLSIIMTVCTTLQAVVLTPFLTRTLVG 221

Query: 220 TYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFS 279
             +PVDA+KLS+STLQ+VV P+L+GSY+Q   P  VK + PF+PLFAVL SSLLACSVFS
Sbjct: 222 ASIPVDAIKLSLSTLQVVVVPILIGSYLQKTCPGVVKRIIPFSPLFAVLTSSLLACSVFS 281

Query: 280 ENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGF 339
           EN+VR KSS+V ++L+ D S    IK++LS ELG++IL+V  LH AGF VGY  AAI GF
Sbjct: 282 ENIVRFKSSLVSSSLSFDASPWIAIKTMLSEELGIVILAVFSLHLAGFVVGYTIAAIGGF 341

Query: 340 KEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDP 399
           +E +RRAIS+EVGMQNSSLGVVLATAHF+S+MVALP AMSAVIMN+MGS+LG FWR I+P
Sbjct: 342 RERERRAISLEVGMQNSSLGVVLATAHFSSAMVALPAAMSAVIMNMMGSSLGSFWRNIEP 401

Query: 400 S 400
           S
Sbjct: 402 S 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242084940|ref|XP_002442895.1| hypothetical protein SORBIDRAFT_08g004520 [Sorghum bicolor] gi|241943588|gb|EES16733.1| hypothetical protein SORBIDRAFT_08g004520 [Sorghum bicolor]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/347 (66%), Positives = 270/347 (77%), Gaps = 16/347 (4%)

Query: 64  PRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLEL 123
           PRW   LS AA LYP  V V       +P AF WFV   P SY+ +LG IMLAMGL L+L
Sbjct: 69  PRWHAALSAAAGLYPASVAVA------RPEAFRWFVALAPGSYTATLGFIMLAMGLALQL 122

Query: 124 KDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNV 183
           +D  +L   RPL+ILFGCAAQY IMP  G IVS  LGLPP LS GLILL CCPGGTASNV
Sbjct: 123 RDFAALLRDRPLAILFGCAAQYAIMPAFGAIVSHALGLPPPLSAGLILLGCCPGGTASNV 182

Query: 184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLL 243
           VTL+A+GDVPLSIVMT+C+TL AV  TPLLTKILAG Y+PVDAVKLS+STLQ+VVAP+LL
Sbjct: 183 VTLVAQGDVPLSIVMTVCSTLAAVFLTPLLTKILAGAYIPVDAVKLSLSTLQVVVAPILL 242

Query: 244 GSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISR 303
           GS +Q+AFP+ V+ VTPF PL AVL SSLLACSVFSEN VRL+S++      +D S +S 
Sbjct: 243 GSSIQTAFPSVVQFVTPFAPLMAVLASSLLACSVFSENFVRLRSTI------ADASSVS- 295

Query: 304 IKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLA 363
             +  S ++G+++LSV LLHFAGFFVGY +AAI GFKE QRRAISIEVGMQNSSLGVVLA
Sbjct: 296 -GNFFSRDIGIVMLSVFLLHFAGFFVGYAAAAIGGFKEKQRRAISIEVGMQNSSLGVVLA 354

Query: 364 TAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVD 410
           TAHF+S +VALPPA+SAVIMN+MGSTLG  W+ I PS S+   +T D
Sbjct: 355 TAHFSSPLVALPPALSAVIMNMMGSTLGLIWQSISPSVSEN--ETTD 399

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224034585|gb|ACN36368.1| unknown [Zea mays]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/341 (65%), Positives = 264/341 (77%), Gaps = 9/341 (2%)

Query: 65  RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELK 124
           RW   LS AA LYP YV  G  +A  +P AF WFV   P SY+ +LG IMLAMGLTL+L 
Sbjct: 62  RWHAALSAAAGLYPAYVAAGASVAFTRPEAFRWFVALAPGSYTATLGFIMLAMGLTLQLS 121

Query: 125 DLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184
           D  +L   RPL+ILFGCAAQYTIMP  G I+S  LGLPP+LS GLILL CCPGGTASNVV
Sbjct: 122 DFAALLRDRPLAILFGCAAQYTIMPAFGAIISHALGLPPSLSAGLILLGCCPGGTASNVV 181

Query: 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLG 244
           TL+A+GDVPLS+VMT+C+TL AV  TPLLTKILAG Y+PVDAVKLS+STLQ+VVAP+LLG
Sbjct: 182 TLVAQGDVPLSVVMTVCSTLAAVFLTPLLTKILAGAYIPVDAVKLSLSTLQVVVAPILLG 241

Query: 245 SYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 304
           S +Q+AFP+  + ++PF PL AVL SSLLA SVFSEN VRL+S++  A         S +
Sbjct: 242 SLIQTAFPSVAQFLSPFAPLMAVLASSLLASSVFSENFVRLRSTIADA---------SPV 292

Query: 305 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLAT 364
             +  G++G +I SV LLHFAGFFVGY +AAI GFKE QRRAISIEVGMQNSSLGVVLAT
Sbjct: 293 NGMFFGDVGTVIFSVFLLHFAGFFVGYAAAAIGGFKEKQRRAISIEVGMQNSSLGVVLAT 352

Query: 365 AHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTS 405
           AHF+S +VALPPA+SAV+MN+MGSTLG  W+Y   S S+  
Sbjct: 353 AHFSSPLVALPPAVSAVVMNMMGSTLGLVWQYTSTSVSENE 393

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496369|ref|NP_001152351.1| bile acid sodium symporter/ transporter [Zea mays] gi|195655405|gb|ACG47170.1| bile acid sodium symporter/ transporter [Zea mays]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/341 (65%), Positives = 263/341 (77%), Gaps = 9/341 (2%)

Query: 65  RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELK 124
           RW   LS AA LYP YV  G  +A  +P AF WFV   P SY+ +L  IMLAMGLTL+L 
Sbjct: 61  RWHAALSAAAGLYPAYVAAGASVAFTRPEAFRWFVALAPGSYTATLDFIMLAMGLTLQLS 120

Query: 125 DLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184
           D  +L   RPL+ILFGCAAQYTIMP  G I+S  LGLPP+LS GLILL CCPGGTASNVV
Sbjct: 121 DFAALLRDRPLAILFGCAAQYTIMPVFGAIISHALGLPPSLSAGLILLGCCPGGTASNVV 180

Query: 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLG 244
           TL+A+GDVPLS+VMT+C+TL AV  TPLLTKILAG Y+PVDAVKLS+STLQ+VVAP+LLG
Sbjct: 181 TLVAQGDVPLSVVMTVCSTLAAVFLTPLLTKILAGAYIPVDAVKLSLSTLQVVVAPILLG 240

Query: 245 SYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 304
           S +Q+AFP+  + ++PF PL AVL SSLLA SVFSEN VRL+S++  A         S +
Sbjct: 241 SLIQTAFPSVAQFLSPFAPLMAVLASSLLASSVFSENFVRLRSTIADA---------SPV 291

Query: 305 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLAT 364
             +  G++G +I SV LLHFAGFFVGY +AAI GFKE QRRAISIEVGMQNSSLGVVLAT
Sbjct: 292 NGMFFGDVGTVIFSVFLLHFAGFFVGYAAAAIGGFKEKQRRAISIEVGMQNSSLGVVLAT 351

Query: 365 AHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTS 405
           AHF+S +VALPPA+SAV+MN+MGSTLG  W+Y   S S+  
Sbjct: 352 AHFSSPLVALPPAVSAVVMNMMGSTLGLVWQYTSTSVSENE 392

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	411
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.525	0.670	0.340	1.6e-49
TAIR|locus:2202935	401	AT1G78560 "AT1G78560" [Arabido	0.559	0.573	0.408	4e-42
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.564	0.567	0.4	6.6e-42
TAIR|locus:2094483	431	AT3G25410 "AT3G25410" [Arabido	0.513	0.489	0.353	1.6e-32
UNIPROTKB|Q8E8Y1	308	SO_4519 "Sodium-dependent tran	0.476	0.636	0.376	4.2e-31
TIGR_CMR|SO_4519	308	SO_4519 "sodium-dependent tran	0.476	0.636	0.376	4.2e-31
TAIR|locus:2132664	409	AT4G22840 "AT4G22840" [Arabido	0.545	0.547	0.345	3.9e-28
UNIPROTKB|F6PLG8	305	SLC10A2 "Uncharacterized prote	0.386	0.521	0.335	1.4e-24
UNIPROTKB|Q12908	348	SLC10A2 "Ileal sodium/bile aci	0.406	0.479	0.313	5.9e-23
TAIR|locus:2118021	407	BAT5 "AT4G12030" [Arabidopsis	0.474	0.479	0.328	6.4e-23

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 337 (123.7 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 76/223 (34%), Positives = 126/223 (56%)

Query:    67 EYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASY-SLSLGLIMLAMGLTLELKD 125
             E + + A   +  +V     IA   P+ F      G  SY ++ LG++M  MGLTL+  D
Sbjct:     5 EAISNIAGKYFAFWVICIATIAYFIPAPF-----LGLNSYITILLGVVMFGMGLTLKAVD 59

Query:   126 LISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVT 185
                +   +PL ++ G  AQ+ IMP    +++  + LP  L+ GL+LL   PGGTASNV+ 
Sbjct:    60 F-KIIATKPLPVIIGVCAQFIIMPLVAYVLAYVMNLPAELAAGLVLLGSVPGGTASNVMV 118

Query:   186 LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGS 245
              +A+G++ LSI MT  +TL A + TPL+  +LAG ++PV+ + + +S +Q+++ P++LG 
Sbjct:   119 YLAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGL 178

Query:   246 YMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSS 288
              ++  FP  V       P  +VL   ++  +V S N+  + SS
Sbjct:   179 VVKKFFPKTVTKGMTVIPFISVLAIIIIVSAVVSANVSSITSS 221

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 98/240 (40%), Positives = 143/240 (59%)

Query:    46 ITRC-VNENSQLLPVTEAKP--RW-EYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQR 101
             + RC ++ N   LP  + K    W E++    ++ +P++V++G ++  ++PS F W    
Sbjct:    68 VPRCGISSND--LPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTFNWVT-- 123

Query:   102 GPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGL 161
              P    + L + ML MG+TL L DL    +  P  +  G   QY++MP S   VSK L L
Sbjct:   124 -PNWTIVGLTITMLGMGMTLTLDDLRGA-LSMPKELFAGFLLQYSVMPLSAFFVSKLLNL 181

Query:   162 PPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTY 221
             PP  + GLIL+ CCPGGTASN+VT IARG+V LS++MT  +T+ AV+ TPLLT  LA  Y
Sbjct:   182 PPHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQY 241

Query:   222 VPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSEN 281
             + VDA+ L +STLQ+V+ PVL G+++   F   VK V+P  P  AV   ++L      +N
Sbjct:   242 ITVDALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQN 301

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 96/240 (40%), Positives = 144/240 (60%)

Query:    57 LPVTEAKP--RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIM 114
             LP +  K   ++E ++    +L+PL+V +G ++   KPS   W        ++L LG +M
Sbjct:    83 LPESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETD---LFTLGLGFLM 139

Query:   115 LAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSC 174
             L+MGLTL  +D     ++ P ++  G  AQY I P  G +++  L L   L+ GLIL+SC
Sbjct:   140 LSMGLTLTFEDFRRC-LRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSC 198

Query:   175 CPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTL 234
             CPGG ASNV T I++G+V LS++MT C+T+GA++ TPLLTK+LAG  VPVDA  L++ST 
Sbjct:   199 CPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTF 258

Query:   235 QIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAAL 294
             Q+V+ P ++G      FP     +   TPL  V++++LL  S   +    LK+   GA L
Sbjct:   259 QVVLVPTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVADVLKTQ--GAQL 316

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 76/215 (35%), Positives = 123/215 (57%)

Query:    74 ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQR 133
             ++L P  V +  V A   P +F W V +    Y+ +LG IML++G+ L + D  +L  +R
Sbjct:   112 SALLPFVVALTAVAALSYPPSFTW-VSKD--LYAPALGGIMLSIGIQLSVDDF-ALAFKR 167

Query:   134 PLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVP 193
             P+ +  G  AQY + P  GV+V+   G+P     G IL  C  G   S+  + +++ DV 
Sbjct:   168 PVPLSVGFVAQYVLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA 227

Query:   194 LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPA 253
             +SI++T  TT+ +V+FTPLL+ +L G+ VPVDAV +S S LQ+V+ P+ LG  + +    
Sbjct:   228 MSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKP 287

Query:   254 AVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSS 288
              V ++ P  P  A++ +SL   S  S N  ++ S+
Sbjct:   288 VVTLLQPVMPFVAMVCTSLCIGSPLSINRSQILSA 322

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 76/202 (37%), Positives = 125/202 (61%)

Query:    76 LYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPL 135
             L+PL+  +G V A L P+   WFV    +   L L +IML+MGLTL+L+D  + F Q+  
Sbjct:     7 LFPLFALLGAVTAYLMPA---WFVVFKNSIVPL-LVVIMLSMGLTLDLQDFANAFKQKR- 61

Query:   136 SILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLS 195
             +++ G   Q+T+MP S + +S  LGL   L++G++L+    GGTASNV+  +A+GDV LS
Sbjct:    62 AVITGLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALS 121

Query:   196 IVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAV 255
             I MT  +TL  V+ TPL+ ++L G  V +  + + +S ++IV+ PV +G  +   F   V
Sbjct:   122 ITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQV 181

Query:   256 KVVTPFTPLFAVLMSSLLACSV 277
               ++P  PL +++ + ++A S+
Sbjct:   182 AKLSPALPLISIV-AIVMAISI 202

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 76/202 (37%), Positives = 125/202 (61%)

Query:    76 LYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPL 135
             L+PL+  +G V A L P+   WFV    +   L L +IML+MGLTL+L+D  + F Q+  
Sbjct:     7 LFPLFALLGAVTAYLMPA---WFVVFKNSIVPL-LVVIMLSMGLTLDLQDFANAFKQKR- 61

Query:   136 SILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLS 195
             +++ G   Q+T+MP S + +S  LGL   L++G++L+    GGTASNV+  +A+GDV LS
Sbjct:    62 AVITGLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALS 121

Query:   196 IVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAV 255
             I MT  +TL  V+ TPL+ ++L G  V +  + + +S ++IV+ PV +G  +   F   V
Sbjct:   122 ITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQV 181

Query:   256 KVVTPFTPLFAVLMSSLLACSV 277
               ++P  PL +++ + ++A S+
Sbjct:   182 AKLSPALPLISIV-AIVMAISI 202

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 83/240 (34%), Positives = 122/240 (50%)

Query:    63 KPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLE 122
             KP     +  A S+ P  V    ++A + P +F WF  R    +  +LG +M A+G+   
Sbjct:    87 KPSIVDRMKKANSILPHVVLASTILALIYPPSFTWFTSR---YFVPALGFLMFAVGINSN 143

Query:   123 LKDLISLFMQRPLSILFGCAAQYTIMPTSGVI-----VSKFLGLPPALSVGLILLSCCPG 177
              KD +  F +RP +IL G   QY + P  G I     VS F  LP  +  G++L+SC  G
Sbjct:   144 EKDFLEAF-KRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQ-LPTPIGAGIMLVSCVSG 201

Query:   178 GTASNVVTLIARGDV-PLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQI 236
                SN  T +    + PLSIVMT  +T  AVL TP+L+ +L G  +PVD   +  S LQ+
Sbjct:   202 AQLSNYATFLTDPALAPLSIVMTSLSTATAVLVTPMLSLLLIGKKLPVDVKGMISSILQV 261

Query:   237 VVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKS--SVVGAAL 294
             V+AP+  G  +   FP     + PF P+ +VL +   AC V +   + + S  S  GA +
Sbjct:   262 VIAPIAAGLLLNKLFPKVSNAIRPFLPILSVLDT---ACCVGAPLALNINSVMSPFGATI 318

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|F6PLG8 SLC10A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 228 (85.3 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
 Identities = 57/170 (33%), Positives = 92/170 (54%)

Query:   112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLIL 171
             ++M +MG  +E+K  +   ++RP  I  G   Q+ IMP +G I+S    + P  +V +++
Sbjct:     1 MVMFSMGCNVEIKKFLG-HIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLI 59

Query:   172 LSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLL----TKIL--AGTYV-PV 224
             + CCPGGTASN++     GD+ LSI MT C+TL A+   PL     TK+   +GT V P 
Sbjct:    60 MGCCPGGTASNILAYWVDGDMDLSISMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPF 119

Query:   225 DAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLA 274
             D +  S+  L   V PV +G  +   +P   K++     +   ++  L+A
Sbjct:   120 DNIGTSLVAL---VVPVSIGMLVNHKWPQKAKIILKVGSITGAILIVLIA 166

GO:0016021 "integral to membrane" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

UNIPROTKB|Q12908 SLC10A2 "Ileal sodium/bile acid cotransporter" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
 Identities = 54/172 (31%), Positives = 94/172 (54%)

Query:   107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALS 166
             ++ L L+M +MG  +E+K  +   ++RP  I  G   Q+ IMP +G I+S    + P  +
Sbjct:    39 TILLALVMFSMGCNVEIKKFLG-HIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQA 97

Query:   167 VGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDA 226
             V ++++ CCPGGTASN++     GD+ LS+ MT C+TL A+   PL   I    +V   +
Sbjct:    98 VVVLIIGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGS 157

Query:   227 VKL---SIST-LQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLA 274
             + +   +I T L  +V PV +G ++   +P   K++     +   ++  L+A
Sbjct:   158 IVIPYDNIGTSLVSLVVPVSIGMFVNHKWPQKAKIILKIGSIAGAILIVLIA 209

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0008206 "bile acid metabolic process" evidence=TAS

GO:0015721 "bile acid and bile salt transport" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 6.4e-23, P = 6.4e-23
 Identities = 67/204 (32%), Positives = 101/204 (49%)

Query:    70 LSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISL 129
             L  A S  P  + +  ++A + P +F WF    P  +   LG +M A+G+    +D +  
Sbjct:    95 LKQAYSFIPHGILLSTILALVYPPSFTWFK---PRYFVPGLGFMMFAVGINSNERDFLEA 151

Query:   130 FMQRPLSILFGCAAQYTIMPTSG----VIVSKFLGLPPALSVGLILLSCCPGGTASNVVT 185
              ++RP +I  G   QY I P  G    VI      LP ++  G++L+SC  G   SN  T
Sbjct:   152 -LKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTT 210

Query:   186 LIARGDVP-LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLG 244
              +    +  LSIVMT  +T  AVL TP+L+ +L G  +PVD   +  S LQ+V+ P+  G
Sbjct:   211 FLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKLPVDVFGMISSILQVVITPIAAG 270

Query:   245 SYMQSAFPAAVKVVTPFTPLFAVL 268
               +   FP     + PF P   V+
Sbjct:   271 LLLNRLFPRLSNAIKPFLPALTVI 294

GO:0005215 "transporter activity" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93YR2	BASS1_ARATH	No assigned EC number	0.4005	0.8004	0.8204	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035394001 SubName- Full=Chromosome chr12 scaffold_78, whole genome shotgun sequence; (346 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	411
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	4e-62
TIGR00841	286	TIGR00841, bass, bile acid transporter	1e-56
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	4e-31
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	2e-09
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	0.002

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score =  202 bits (517), Expect = 4e-62
 Identities = 111/320 (34%), Positives = 169/320 (52%), Gaps = 28/320 (8%)

Query: 76  LYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPL 135
           ++ L+V +   IA + P  FGW    G A   ++L LIM  MGLTL  +D ++  ++ P 
Sbjct: 14  IFLLWVVLLAAIAPIFPETFGWL---GSAIP-IALALIMFGMGLTLSREDFLAG-LKHPR 68

Query: 136 SILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLS 195
            +L G AAQ+ +MP   ++++K   LPP L+VGL+LL CCPGG ASN +T +A+G+V LS
Sbjct: 69  LVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALS 128

Query: 196 IVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAV 255
           +  T  +TL     TPLL  +LAG  VPVD   + +S L  V+ P +LG  ++   P  V
Sbjct: 129 VCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWV 188

Query: 256 KVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVI 315
           + +    P  +VL   L+  + FS  +     S +                       +I
Sbjct: 189 ERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGL-----------------------LI 225

Query: 316 ILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALP 375
            ++V+L +  G  +GY  A + GF +     I+IE GMQN  LG  LA A F + ++ALP
Sbjct: 226 FVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALP 285

Query: 376 PAMSAVIMNIMGSTLGFFWR 395
            A+ +V  N+ G+ L   + 
Sbjct: 286 LAIFSVWQNMSGAVLAGLYA 305

Length = 319

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score =  187 bits (476), Expect = 1e-56
 Identities = 102/290 (35%), Positives = 148/290 (51%), Gaps = 31/290 (10%)

Query: 110 LGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGL 169
           L LIM +MG TLE +D     +++P  ++ G  AQY IMP +G +++K   LPP L+VG+
Sbjct: 14  LFLIMFSMGCTLEFEDFKGH-LRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGV 72

Query: 170 ILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP----VD 225
           +++ CCPGGTASNV T + +GD+ LSI MT C+TL A+   PLL  I A  +V     V 
Sbjct: 73  LIVGCCPGGTASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVP 132

Query: 226 AVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRL 285
            + + +S L IV+ PV +G  ++   P   K++     L +V + S++   V   N    
Sbjct: 133 YLGIGLS-LVIVLIPVSIGMLVKHKLPQIAKIIL-KVGLISVFLLSVIIAVVGGIN---- 186

Query: 286 KSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRR 345
               V    T    L+                  +LL  AGF +GYL A + G    + R
Sbjct: 187 ----VENLATIGPLLLL---------------VGILLPLAGFLLGYLLAKLAGLPWARCR 227

Query: 346 AISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWR 395
            ISIEVGMQNS L   +A   F S  VA+P A+  +I  +        + 
Sbjct: 228 TISIEVGMQNSQLCSTIAQLSF-SPEVAVPSAIFPLIYALFQLAFALLFL 276

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score =  116 bits (294), Expect = 4e-31
 Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 8/168 (4%)

Query: 108 LSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS-KFLGLPPALS 166
           L L L+M +MGL +  +D   LF +RP ++L G   Q+ IMP    I++   L LPP L+
Sbjct: 2   LGLFLMMFSMGLKVRYEDFKELF-RRPKALLLGLLLQWVIMPLLMFILAWFLLRLPPELA 60

Query: 167 VGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVD- 225
           VGLIL+ C PGG  SNV T +A+GDV LS+VM   +TL A L TPLL+ +L+G  + V  
Sbjct: 61  VGLILVGCAPGGAMSNVWTYLAKGDVELSVVMVALSTLTAPLVTPLLSFLLSGLLLDVGT 120

Query: 226 ---AVKLSISTLQIVVAPVLLGSYMQSAFPA--AVKVVTPFTPLFAVL 268
               + L  S L  V+ P++ G   +   P     + + P  P  +++
Sbjct: 121 AVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLI 168

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 24/262 (9%)

Query: 111 GLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLG--LPPALSVG 168
            LI    GL L  ++L++      L  LF     + + P  G+ +S  L   LPP L +G
Sbjct: 38  ALIFFLSGLKLSTEELLAGLRNWRL-HLFVQLFTFVLFPLLGLGLSPLLPAALPPELLLG 96

Query: 169 LILLSCCPGGTASNVV-TLIARGDVPLSIVMTMCTTLGAVLFTPLLTK-ILAGTYVPVDA 226
            + L+  P   +S+V  T  A G+V  ++     + L  V  TPLL   +L G    VD 
Sbjct: 97  FLFLAALPTTVSSSVAMTSQAGGNVAAAVCSASISNLLGVFLTPLLVGLLLGGGGGGVDL 156

Query: 227 VKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLK 286
             +    L  ++ P +LG  ++  FP   K V     L   +  S +   V+        
Sbjct: 157 GAVLKKLLLQLLLPFVLGQLLRPLFP---KWVARHKKLLKKVDRSSILLIVY----TAFS 209

Query: 287 SSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRA 346
           ++ V               S+    L VI    LLL F    +   +A + GF    R A
Sbjct: 210 TAFVEGIWH----------SVSHSILLVIFALGLLLLFVVLVLTTFAARLLGFSREDRIA 259

Query: 347 ISIEVGMQNS-SLGVVLATAHF 367
           I +  G + S +LGV LA+  F
Sbjct: 260 I-LFCGSKKSLALGVPLASVLF 280

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALS 166
           S +  L ++A+GL+L     + L   +P  IL   + +  + P   ++V+K LGL     
Sbjct: 200 SAASPLALIALGLSL---AFLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLAL 256

Query: 167 VGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTY 221
             L+LLS  P    + V+     GD  L+    + +TL ++L  PLL  +L  + 
Sbjct: 257 QVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLRSL 311

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	411
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	100.0
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	100.0
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	100.0
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.97
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.95
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.19
PRK09903	314	putative transporter YfdV; Provisional	99.13
COG0679	311	Predicted permeases [General function prediction o	99.02
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	98.89
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	98.75
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	98.48
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	98.16
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	98.09
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.78
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.55
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	97.54
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	97.54
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.3
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	97.28
PRK10669	558	putative cation:proton antiport protein; Provision	97.21
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.1
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	96.91
PRK05326	562	potassium/proton antiporter; Reviewed	96.89
PLN03159	832	cation/H(+) antiporter 15; Provisional	96.53
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	96.47
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	96.12
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	95.67
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	95.31
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	94.83
PRK10711	231	hypothetical protein; Provisional	94.55
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	94.55
PRK15086	372	ethanolamine utilization protein EutH; Provisional	94.42
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	94.4
PRK04288	232	antiholin-like protein LrgB; Provisional	94.36
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	94.35
COG0679	311	Predicted permeases [General function prediction o	94.24
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	94.15
COG2855	334	Predicted membrane protein [Function unknown]	93.04
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	92.13
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	92.02
TIGR00698	335	conserved hypothetical integral membrane protein.	92.01
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	88.53
PF15201	54	Rod_cone_degen: Progressive rod-cone degeneration	88.08
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	86.7
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	84.6
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	84.35
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	83.83
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	83.5
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	83.09
PRK09903	314	putative transporter YfdV; Provisional	81.1
KOG2722	408	consensus Predicted membrane protein [Function unk	80.34

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=5.4e-54  Score=417.68  Aligned_cols=310  Identities=36%  Similarity=0.588  Sum_probs=286.8

Q ss_pred             HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHH
Q 015189           68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYT  146 (411)
Q Consensus        68 ~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~v  146 (411)
                      |.++.. .+.+++|+++.+.++...|+.+.++++    .+..+++++||.+|++++.+|+++.. +|||.++.++++||+
T Consensus         5 ~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~----~~~~~l~lImf~mGl~Ls~~d~~~~~-~~p~~vligl~~qfv   79 (319)
T COG0385           5 RFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGS----AIPIALALIMFGMGLTLSREDFLAGL-KHPRLVLIGLAAQFV   79 (319)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHhccccchhhhH----HHHHHHHHHHHhcCCCCCHHHHHHhh-cchHHHHHHHHHHHH
Confidence            445333 567999999999999999999999985    46779999999999999999999998 899999999999999


Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccCh
Q 015189          147 IMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDA  226 (411)
Q Consensus       147 l~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd~  226 (411)
                      +||++++++++.+++|++++.|+++++|||+|+.||+||+++|||++++++++.+||+++++++|+++.++.|+++++|.
T Consensus        80 lmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~  159 (319)
T COG0385          80 LMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDV  159 (319)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhh
Q 015189          227 VKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKS  306 (411)
Q Consensus       227 ~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~  306 (411)
                      ++++.++++.+++|+++|+.+|++.|++.++.++.++.++..++.++++..++.+.+.+.+.                  
T Consensus       160 ~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~------------------  221 (319)
T COG0385         160 GGMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS------------------  221 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH------------------
Confidence            99999999999999999999999999999999999999999999999999999888766541                  


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 015189          307 ILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIM  386 (411)
Q Consensus       307 ~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~  386 (411)
                           ...+.+.+++++.++|..||+.+|++|+|++|++|++||.|+||.++|+++|..||++|.+++|.++|++||++.
T Consensus       222 -----~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~  296 (319)
T COG0385         222 -----GLLIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMS  296 (319)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHH
Confidence                 124667778888999999999999999999999999999999999999999999776699999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCC
Q 015189          387 GSTLGFFWRYIDPSDSKTS  405 (411)
Q Consensus       387 ~~~~a~~~~~~~~~~~~~~  405 (411)
                      +++++++|+||..++.+++
T Consensus       297 ~a~la~~~~~~~~~~~~~~  315 (319)
T COG0385         297 GAVLAGLYARRILKAAEKK  315 (319)
T ss_pred             HHHHHHHHHhccccccccc
Confidence            9999999999876555443

>TIGR00832 acr3 arsenical-resistance protein

Probab=100.00  E-value=2.8e-44  Score=357.53  Aligned_cols=293  Identities=17%  Similarity=0.209  Sum_probs=246.4

Q ss_pred             HHhhHHHHHHHH----HHHHHhhcccccchhhhcc----chhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189           72 TAASLYPLYVTV----GGVIACLKPSAFGWFVQRG----PASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (411)
Q Consensus        72 ~~~~~~p~~i~~----~~llgl~~P~~~~~~~~~~----p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (411)
                      +++++++.+++.    +.++|+..|+.+.+.+...    ...+.+.++++||++|++++.+|+++.+ ||||.+..+++.
T Consensus         3 ~~~~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~-~~pk~~~~~~~~   81 (328)
T TIGR00832         3 LLERYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVF-KDPKGLILSLFI   81 (328)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHH-cCchHHHHHHHH
Confidence            345555555544    6688999999988886421    1123456778999999999999999998 899999999999


Q ss_pred             HHHHHHHHHHHHHHHc-CCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhC---
Q 015189          144 QYTIMPTSGVIVSKFL-GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG---  219 (411)
Q Consensus       144 ~~vl~Pll~~~l~~~~-~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g---  219 (411)
                      ||+++|+++|++++++ +++++++.|+++++|||||++||+||+++|||+++++.+|.+||+++++++|.+++++.|   
T Consensus        82 qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~  161 (328)
T TIGR00832        82 NWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSP  161 (328)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            9999999999999975 999999999999999999999999999999999999999999999999999999988876   


Q ss_pred             -----cccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HH-HhcccchhHHHHHHHHHHHHHHhhhhHHHhhh
Q 015189          220 -----TYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAA-----VK-VVTPFTPLFAVLMSSLLACSVFSENLVRLKSS  288 (411)
Q Consensus       220 -----~~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~-----~~-~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~  288 (411)
                           +++++|..+++.+++.++++|+++|+.+|++.+++     .+ +.+|..+.++.+++.+++...++.|.+.+.+.
T Consensus       162 ~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~  241 (328)
T TIGR00832       162 IWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIEL  241 (328)
T ss_pred             cccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                 34689999999999999999999999999999854     33 66677777888777888888888887766541


Q ss_pred             hhccccccchhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcC
Q 015189          289 VVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT  368 (411)
Q Consensus       289 i~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~  368 (411)
                                          .++...+..++++++.++|.+||+++|.+|++++|+||+++|+|+||.++|+++|..+|+
T Consensus       242 --------------------~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~  301 (328)
T TIGR00832       242 --------------------PLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFG  301 (328)
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCC
Confidence                                012344556778899999999999999999999999999999999999999999999998


Q ss_pred             Cc-cchHHHHHHHHHHHH
Q 015189          369 SS-MVALPPAMSAVIMNI  385 (411)
Q Consensus       369 ~p-~~alp~~i~~l~q~i  385 (411)
                      ++ ..+.+.++..++|..
T Consensus       302 ~~~~~a~~~~~~~l~e~~  319 (328)
T TIGR00832       302 LNSGAALATVVGPLIEVP  319 (328)
T ss_pred             CCcccHHHHHhhhhhehh
Confidence            64 455555555555543

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00841 bass bile acid transporter

Probab=100.00  E-value=2.2e-43  Score=345.32  Aligned_cols=271  Identities=37%  Similarity=0.605  Sum_probs=246.6

Q ss_pred             hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHH
Q 015189          105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV  184 (411)
Q Consensus       105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~  184 (411)
                      .+.+.++++||.+|++++.+|+++.+ ||||.+..+++.|++++|+++|++++.++++++++.|+++++||||+.++++|
T Consensus         9 ~~~~~l~~~m~~~G~~l~~~~~~~~~-~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~   87 (286)
T TIGR00841         9 ILLILLFLIMFSMGCTLEFEDFKGHL-RKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVF   87 (286)
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHH
Confidence            34566999999999999999999998 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccc----cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcc
Q 015189          185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP----VDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTP  260 (411)
Q Consensus       185 t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~----vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~  260 (411)
                      |+++|||.++++.++.++|+++++++|+++.++.+...+    +|+.+++.+ +.++++|+++|+.+|+++|+..++.++
T Consensus        88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~~~~~~  166 (286)
T TIGR00841        88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIAKIILK  166 (286)
T ss_pred             HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            999999999999999999999999999999998766544    999999999 999999999999999999999888888


Q ss_pred             cchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 015189          261 FTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFK  340 (411)
Q Consensus       261 ~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~  340 (411)
                       .+.++.+.+.+++..+++.|.+.+.+                       +.+.+++.+++++.++|.+||+.+|.+|++
T Consensus       167 -~~~~s~~~l~liv~~~~~~~~~~i~~-----------------------~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~  222 (286)
T TIGR00841       167 -VGLISVFLLSVIIAVVGGINVENLAT-----------------------IGPLLLLVGILLPLAGFLLGYLLAKLAGLP  222 (286)
T ss_pred             -CchHHHHHHHHHHHHHHHhhHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence             88888888877777777777665543                       123456777889999999999999999999


Q ss_pred             ccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 015189          341 EPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS  402 (411)
Q Consensus       341 ~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a~~~~~~~~~~~  402 (411)
                      ++|+||+++|+|+||+++|++++.++|+ |+.++|.++|.+||++.+..++.+|+|+....+
T Consensus       223 ~~~~~t~~~~~g~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~~~~~  283 (286)
T TIGR00841       223 WARCRTISIEVGMQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIHFCYL  283 (286)
T ss_pred             HhhheeeeeeeecccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999996 889999999999999999999999998765443

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=100.00  E-value=4.3e-39  Score=318.43  Aligned_cols=302  Identities=27%  Similarity=0.393  Sum_probs=266.6

Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhccc-hhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 015189           76 LYPLYVTVGGVIACLKPSAFGWFVQRGP-ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI  154 (411)
Q Consensus        76 ~~p~~i~~~~llgl~~P~~~~~~~~~~p-~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~  154 (411)
                      ++++.+++++++|+.+|+.+...+...+ ....+++++++|..|++++.+|+++.+ ||+|....++..+|+++|+++++
T Consensus         2 ~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~-~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    2 WFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAAL-RNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             chHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence            5788889999999999998875544321 245678999999999999999999998 89999999999999999999999


Q ss_pred             HHHHc--CCChHHHHHHHHHccCchhhHHH-HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh-CcccccChHHHH
Q 015189          155 VSKFL--GLPPALSVGLILLSCCPGGTASN-VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA-GTYVPVDAVKLS  230 (411)
Q Consensus       155 l~~~~--~l~~~~~~GliL~a~~P~~~~s~-v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~-g~~v~vd~~~l~  230 (411)
                      +.+++  ..++++..|+++++|+|++..|+ +||+++|||.+.++.++.++|+++++++|+++.++. ++..++|..+++
T Consensus        81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~  160 (313)
T PF13593_consen   81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL  160 (313)
T ss_pred             HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence            99988  46899999999999999998877 699999999999999999999999999999999998 678899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHH-HhhhhhccccccchhhHHHhhhhhh
Q 015189          231 ISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVR-LKSSVVGAALTSDLSLISRIKSILS  309 (411)
Q Consensus       231 ~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~-i~~~i~~~~~~~~~~~~~~l~~~~~  309 (411)
                      .++...+++|+++|+.+|++++++.+|.++..+.++..+++++++..++.+..+ +.++               . +  .
T Consensus       161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~---------------~-~--~  222 (313)
T PF13593_consen  161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHS---------------V-S--A  222 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh---------------C-C--H
Confidence            999999999999999999999999999999999999999999999988876332 1110               0 0  0


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCC----ccchHHHHHHHHHHHH
Q 015189          310 GELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTS----SMVALPPAMSAVIMNI  385 (411)
Q Consensus       310 ~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~----p~~alp~~i~~l~q~i  385 (411)
                      .+...+....+.++...+.++|+.+|.+|++++|++|+.|+.++||.++|++++...|++    +...+|.++||..|.+
T Consensus       223 ~~~~~~~~~~~~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~  302 (313)
T PF13593_consen  223 AALALIVAVSLLLLLVVLVLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLF  302 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHH
Confidence            123445566778899999999999999999999999999999999999999999999975    3689999999999999


Q ss_pred             HHHHHHHHhhc
Q 015189          386 MGSTLGFFWRY  396 (411)
Q Consensus       386 ~~~~~a~~~~~  396 (411)
                      .++.++..|+|
T Consensus       303 ~~s~la~~~~r  313 (313)
T PF13593_consen  303 VGSFLASRLAR  313 (313)
T ss_pred             HHHHHHHHHcC
Confidence            99999999986

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.6e-35  Score=282.73  Aligned_cols=322  Identities=19%  Similarity=0.217  Sum_probs=277.1

Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHHH----HHhhcccccchhhhc----cchhHHHHHHHHHHHHcccCChHHHHHHHHcCc
Q 015189           63 KPRWEYLLSTAASLYPLYVTVGGV----IACLKPSAFGWFVQR----GPASYSLSLGLIMLAMGLTLELKDLISLFMQRP  134 (411)
Q Consensus        63 ~~~~~~~l~~~~~~~p~~i~~~~l----lgl~~P~~~~~~~~~----~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p  134 (411)
                      +.++.|.+++++++++.|+.++++    +|..+|+.+...+..    ....+.+++.+||+.+.++++.+++++.. +++
T Consensus         2 ~~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~-k~~   80 (342)
T COG0798           2 KMKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVF-KDP   80 (342)
T ss_pred             chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHH-hcc
Confidence            346678889999999888877664    577778865555421    12357889999999999999999999998 899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHH
Q 015189          135 LSILFGCAAQYTIMPTSGVIVSKFL-GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLL  213 (411)
Q Consensus       135 ~~l~~~l~~~~vl~Pll~~~l~~~~-~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~  213 (411)
                      |.+.+.++.|+++.|+++|+++++| +..|++..|+++++.+||..++.+|+++++||.++++..++++.++++++.|.+
T Consensus        81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~  160 (342)
T COG0798          81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPL  160 (342)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999986 777899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCcc-cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHhcccchhHHHHHHHHHHHHHHhhhhHHHh
Q 015189          214 TKILAGTY-VPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAA------VKVVTPFTPLFAVLMSSLLACSVFSENLVRLK  286 (411)
Q Consensus       214 l~ll~g~~-v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~------~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~  286 (411)
                      .+++.+.. ++++++++.+++++++.+|+++|++.|+...|+      .+++.|..++++..++.+.+..+|+.+++.+.
T Consensus       161 ~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv  240 (342)
T COG0798         161 GKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIV  240 (342)
T ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHH
Confidence            98888754 789999999999999999999999999976543      24667777778888888888899999999887


Q ss_pred             hhhhccccccchhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHh
Q 015189          287 SSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAH  366 (411)
Q Consensus       287 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~  366 (411)
                      ++           |.         +...+++..++.....|.++|+++|.+|++++|+.+++|+++.+|.++|+++|.+.
T Consensus       241 ~~-----------p~---------~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~l  300 (342)
T COG0798         241 EQ-----------PL---------DILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIAL  300 (342)
T ss_pred             hC-----------hH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHHh
Confidence            63           11         34456677788888999999999999999999999999999999999999999999


Q ss_pred             cC-CccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 015189          367 FT-SSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTS  405 (411)
Q Consensus       367 f~-~p~~alp~~i~~l~q~i~~~~~a~~~~~~~~~~~~~~  405 (411)
                      || +...++..+++.++|...--.+++.+++.+++-.+++
T Consensus       301 fG~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~~  340 (342)
T COG0798         301 FGLTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKNE  340 (342)
T ss_pred             cCccccchhhhhccchhhHHHHHHHHHHHHHHhHhhcccC
Confidence            98 5678888899999999988888888877665554444

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.97  E-value=1.8e-29  Score=232.52  Aligned_cols=178  Identities=38%  Similarity=0.623  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHccCchhhHHHHHHH
Q 015189          108 LSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS-KFLGLPPALSVGLILLSCCPGGTASNVVTL  186 (411)
Q Consensus       108 ~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~-~~~~l~~~~~~GliL~a~~P~~~~s~v~t~  186 (411)
                      +.++++||++|++++.+|+++.. ||||.+..+++.|++++|+++|+++ ..++++++++.|+++++|||||.++++||+
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~-~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~   80 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVL-RRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTY   80 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHH-HSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            47899999999999999999998 8999999999999999999999999 788999999999999999999999999999


Q ss_pred             HcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccC---hHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHhccc
Q 015189          187 IARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVD---AVKLSISTLQIVVAPVLLGSYMQSAFP--AAVKVVTPF  261 (411)
Q Consensus       187 ~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd---~~~l~~~ll~~vllPl~lG~~lr~~~~--~~~~~i~~~  261 (411)
                      ++|||.++++.++.++++++++++|+++.++.+...+.|   +++++.+++.++++|+++|+++|++.|  +..+++++.
T Consensus        81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~  160 (187)
T PF01758_consen   81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPF  160 (187)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCC
T ss_pred             HhCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999999999999999998877777   899999999999999999999999999  888899999


Q ss_pred             chhHHHHHHHHHHHHHHhhhhHHHh
Q 015189          262 TPLFAVLMSSLLACSVFSENLVRLK  286 (411)
Q Consensus       262 ~~~~s~~~l~liv~~v~~~~~~~i~  286 (411)
                      .+.++.+++++++...++.|.+.+.
T Consensus       161 ~~~~s~~~l~~~i~~~~~~~~~~i~  185 (187)
T PF01758_consen  161 LKPLSFILLLLIIVLIFASNASVIA  185 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTH----
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccc
Confidence            9999998888888777777766543

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.6e-28  Score=242.75  Aligned_cols=281  Identities=37%  Similarity=0.522  Sum_probs=240.8

Q ss_pred             hHHHHHHHHHHHHHhhcc-cccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 015189           75 SLYPLYVTVGGVIACLKP-SAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGV  153 (411)
Q Consensus        75 ~~~p~~i~~~~llgl~~P-~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~  153 (411)
                      ..+|........+....| ..+.|+...   ....++...|+++|++.|.+++++.+ +||+.+.+|++.|+++||+.+|
T Consensus        86 ~~lp~~~~~~~v~~~~~~~~~~t~l~~~---~~~~gl~~~~ls~g~~~~~~~~~~~~-~rP~~~~lG~v~q~~i~pl~~f  161 (371)
T KOG2718|consen   86 LILPLLVFLLKVLFLLDPLLAFTWLVTG---CFPPGLLSNMLSFGIKLDMDLFAGMI-KRPTPLALGFVPQYLIMPLLGF  161 (371)
T ss_pred             cchhHHHHHHHHHhhcCCcccceEEEeC---ccccHHHHHHHHHhcCccHHHHhhHh-hCCcceeehHHHHHHHHHHHHH
Confidence            478999999998888888 778888642   34578999999999999999999998 8999999999999999999999


Q ss_pred             HHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccChHHHHHH
Q 015189          154 IVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIA-RGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIS  232 (411)
Q Consensus       154 ~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a-~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd~~~l~~~  232 (411)
                      .+++.+.++...++|.+++.|++++..++..++.. +||..+++.||.++|+.+++++|++..++.+..++.|...+..+
T Consensus       162 ~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s  241 (371)
T KOG2718|consen  162 LLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIAS  241 (371)
T ss_pred             hhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhh
Confidence            99999988888878888888887777766555555 99999999999999999999999999999999999999888889


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhhhhhhhH
Q 015189          233 TLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGEL  312 (411)
Q Consensus       233 ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~~~~~~~  312 (411)
                      .++++.+|+.+|.++|+++|+..+.+.+.++.++.....+.+......|.+.+..                       ..
T Consensus       242 ~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-----------------------~~  298 (371)
T KOG2718|consen  242 ILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-----------------------FG  298 (371)
T ss_pred             hhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-----------------------HH
Confidence            9999999999999999999999999999999999877777666666555544332                       23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHH
Q 015189          313 GVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVI  382 (411)
Q Consensus       313 ~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~alp~~i~~l~  382 (411)
                      +.++..+..++++||..||+.++-.+-+..++|++++|+|+||..+++++++.+|.||.++.+++...+.
T Consensus       299 ~~i~~~~~~l~l~g~l~~Y~~~~~~~~~~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s~v~  368 (371)
T KOG2718|consen  299 YQILLLGAALPLAGFLAGYLLSFSPLDDVATARTISIETGMQNSLLALALATKHLQDPLVVVPPATSSVL  368 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhhhhcchHHHhccchhHHHHHHhhcccCCceeeeccchhhhh
Confidence            5677788899999999999997433333558999999999999999999999999999888877665443

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.19  E-value=4.1e-10  Score=112.09  Aligned_cols=143  Identities=15%  Similarity=0.194  Sum_probs=112.4

Q ss_pred             HHHHHHhhHH-HHHHHHHHHH---HhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189           68 YLLSTAASLY-PLYVTVGGVI---ACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (411)
Q Consensus        68 ~~l~~~~~~~-p~~i~~~~ll---gl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (411)
                      +.++++-++. ....++|.++   |+-.|+......+.   .-....++.|+..|+.++.++.+    ++.+......+.
T Consensus       174 ~~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~---lg~~~~plaLl~lG~~l~~~~~~----~~~~~~~~~~~~  246 (321)
T TIGR00946       174 FVWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISI---LSGATTPMALFSLGLALSPRKIK----LGVRDAILALIV  246 (321)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHH---HHHHHHHHHHHHHHHhhChhhhc----cChHHHHHHHHH
Confidence            3444443333 3344444433   44446544333221   34678899999999999877653    345667788889


Q ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189          144 QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (411)
Q Consensus       144 ~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll  217 (411)
                      +++++|++++++...++++++.....++++++|++..+.++++.+|+|.+++...+.++|+++++++|+|..++
T Consensus       247 klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~  320 (321)
T TIGR00946       247 RFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL  320 (321)
T ss_pred             HHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875

>PRK09903 putative transporter YfdV; Provisional

Probab=99.13  E-value=1.1e-09  Score=108.92  Aligned_cols=142  Identities=16%  Similarity=0.133  Sum_probs=109.8

Q ss_pred             HHHHHHhhHHH-HHHHHHHHH---HhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189           68 YLLSTAASLYP-LYVTVGGVI---ACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (411)
Q Consensus        68 ~~l~~~~~~~p-~~i~~~~ll---gl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (411)
                      |.++++.++.+ ...++|.++   |+-.|+......+.   .-....++.|+..|+++...+++    .+ +....+.+.
T Consensus       165 ~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~---lg~~~~PlaL~~iG~~L~~~~~~----~~-~~~~~~~~~  236 (314)
T PRK09903        165 SALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNL---IAKANSGVAVFAAGLTLAAHKFE----FS-AEIAYNTFL  236 (314)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcccc----cc-HHHHHHHHH
Confidence            34444433333 334444432   44456644433321   34678899999999998876542    12 345677788


Q ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189          144 QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (411)
Q Consensus       144 ~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll  217 (411)
                      ++++.|++++++...+++++.....+++++++|++..+.+++...|+|.+++...+.+||+++.+++|+|++++
T Consensus       237 Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        237 KLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888899999999999999999999999999999999999999999999999999999999875

>COG0679 Predicted permeases [General function prediction only]

Probab=99.02  E-value=7e-09  Score=103.05  Aligned_cols=150  Identities=24%  Similarity=0.291  Sum_probs=117.5

Q ss_pred             hHHHHHHHHHhhHHHHHH-HHHHHH---HhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHH
Q 015189           64 PRWEYLLSTAASLYPLYV-TVGGVI---ACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILF  139 (411)
Q Consensus        64 ~~~~~~l~~~~~~~p~~i-~~~~ll---gl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~  139 (411)
                      ....+..+.+.++.+++. ++|.++   |+..|+......+   ..-....++.|+..|++++.++.++   .+++.+..
T Consensus       156 ~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~---~l~~a~~pl~li~lG~~L~~~~~~~---~~~~~~~~  229 (311)
T COG0679         156 KSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVD---LLASAASPLALIALGLSLAFLKLKG---SKPPIILI  229 (311)
T ss_pred             hHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHH---HHHHhhhhHHHHHHhhhcchhhhcc---ccchhHHH
Confidence            344556666655544444 444433   5666764433322   2456789999999999999955443   23555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015189          140 GCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG  219 (411)
Q Consensus       140 ~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g  219 (411)
                      ....+++++|+++++.+++++++++....+++++++|++..+.+++++.|+|.+++...+.++|+++.+++|.+...+.+
T Consensus       230 ~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~  309 (311)
T COG0679         230 ALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR  309 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66679999999999999999999999999999999999999999999999999999999999999999999999887754

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=98.89  E-value=4.1e-09  Score=96.87  Aligned_cols=191  Identities=21%  Similarity=0.204  Sum_probs=140.4

Q ss_pred             HHHHHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch-hH-HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHH
Q 015189           65 RWEYLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA-SY-SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGC  141 (411)
Q Consensus        65 ~~~~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~-~~-~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l  141 (411)
                      ..+|..++. .+++-..+.+....+-+-|+.+.-.+.+.|- .+ -+..+-+++..|++++.|++...+ ++|+..+.++
T Consensus        12 ~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~-~~w~LhLFil   90 (287)
T KOG4821|consen   12 WAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAM-LNWRLHLFIL   90 (287)
T ss_pred             HHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHH-hCCchHHHHH
Confidence            346888888 6778888888887777778766544433321 01 235566789999999999999998 8899888999


Q ss_pred             HHHHHHHHHHHHHHHHHc---CCChHHHHHHHHHccCchhhHHHH-HHHHcCCChhhH-HHHHHHHHHHHHHHHHHHHHH
Q 015189          142 AAQYTIMPTSGVIVSKFL---GLPPALSVGLILLSCCPGGTASNV-VTLIARGDVPLS-IVMTMCTTLGAVLFTPLLTKI  216 (411)
Q Consensus       142 ~~~~vl~Pll~~~l~~~~---~l~~~~~~GliL~a~~P~~~~s~v-~t~~a~Gd~~la-~~lt~~stlls~~~~Pl~l~l  216 (411)
                      +..+.+.|-..|++..+.   +.|+++..|+.+.+|||+..+|+| .|..+|||.... +.....+++++....|-....
T Consensus        91 I~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~  170 (287)
T KOG4821|consen   91 ILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQM  170 (287)
T ss_pred             HHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999887654   467799999999999999999996 599999997332 233345555555666655555


Q ss_pred             HhCcc--------cc----cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 015189          217 LAGTY--------VP----VDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVK  256 (411)
Q Consensus       217 l~g~~--------v~----vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~  256 (411)
                      +..+.        +.    .-+..++.+....+++|...|...+..+|+-+.
T Consensus       171 LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  222 (287)
T KOG4821|consen  171 LLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTA  222 (287)
T ss_pred             HHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCcee
Confidence            54211        11    123345667778899999999999998887544

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=98.75  E-value=1.2e-07  Score=96.27  Aligned_cols=139  Identities=17%  Similarity=0.176  Sum_probs=105.3

Q ss_pred             hhHHHHHHHHHHHHHhhccccc----chhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHH
Q 015189           74 ASLYPLYVTVGGVIACLKPSAF----GWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMP  149 (411)
Q Consensus        74 ~~~~p~~i~~~~llgl~~P~~~----~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~P  149 (411)
                      .+-.....++|.++++.-+..-    .++.+.....-....++.||.+|.++.....+...  +.+......+.+++++|
T Consensus       243 ~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~--~~~~~~~~~~~rlii~P  320 (385)
T PF03547_consen  243 KNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL--GWKPSIIAVLVRLIILP  320 (385)
T ss_pred             hCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch--hhHHHHHHHHHHHHHHH
Confidence            3334445666666665543322    22222111123567889999999988766543222  23344456888999999


Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 015189          150 TSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLT  214 (411)
Q Consensus       150 ll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l  214 (411)
                      ++++++.+.++++++....+++.+++|++..+.+++..++.|.+.+......+++++++++|+|+
T Consensus       321 ~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  321 LIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999973

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=98.48  E-value=2.1e-05  Score=77.41  Aligned_cols=286  Identities=19%  Similarity=0.208  Sum_probs=153.3

Q ss_pred             HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch----hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHH
Q 015189           68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA----SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCA  142 (411)
Q Consensus        68 ~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~----~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~  142 (411)
                      |.++++ --.+.+=+++|+++.-++|+.+. ..+....    -....+++.+|++|.+++.|+..+.+ +|.-   .-+.
T Consensus         5 ~~~~kiPgg~m~vPl~lga~inTf~P~~l~-iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l-~kg~---~l~~   79 (312)
T PRK12460          5 KAIKKIPGGMMVVPLLIGALINTFFPQALE-IGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQAL-LKGG---VLTI   79 (312)
T ss_pred             hhhccCCCceeHHHHHHHHHHHhccCcchh-hCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhh-hhhh---hhhh
Confidence            344555 23344446788888889999743 2221000    13568899999999999999988887 4332   2245


Q ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH--HH---HHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189          143 AQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN--VV---TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (411)
Q Consensus       143 ~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~--v~---t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll  217 (411)
                      .++++-=++++.++++++.+.-  .|+-.++..-.-+.+|  .|   +..+|-+.+- -.....    ++---|+...+.
T Consensus        80 ~K~~~~~~~g~~~~~~~g~~g~--~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~-gA~~~~----sl~~GPf~tm~a  152 (312)
T PRK12460         80 TKLGVAIVIGLLVGKFFGAEGI--FGLSGLAIVAAMSNSNGGLYAALMGEFGDERDV-GAISIL----SLNDGPFFTMLA  152 (312)
T ss_pred             HHHHHHHHHHHHHHHHcCcccc--cchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhh-hHHhhh----hhccCcHHHHHH
Confidence            6888888889999999986652  2333322222222222  33   4444443332 222222    333335444433


Q ss_pred             hCcc--cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHH-HhhhhHHHhhhhhcccc
Q 015189          218 AGTY--VPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSV-FSENLVRLKSSVVGAAL  294 (411)
Q Consensus       218 ~g~~--v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v-~~~~~~~i~~~i~~~~~  294 (411)
                      .+..  .++++..+     .-.++|+++|+.++...+++.+..++-.+.    .+.+..+.. +..|.+++.+       
T Consensus       153 Lga~gLA~ip~~~l-----v~lilpILiGmilGNld~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~I~~-------  216 (312)
T PRK12460        153 LGAAGLANIPIMAL-----VAALLPLVLGMILGNLDPDMRKFLTKGGPL----LIPFFAFALGAGINLSMLLQ-------  216 (312)
T ss_pred             HHHHHHhcCChHHH-----HHHHHHHHHHHHHhccchhhHHHHhccceE----eHHHHHHHhcCCeeHHHHHH-------
Confidence            3321  24554322     348999999999999877777777765543    111100000 1112222221       


Q ss_pred             ccchhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchh-HHHHHHHHH--hcCCcc
Q 015189          295 TSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATA--HFTSSM  371 (411)
Q Consensus       295 ~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~-~Lai~la~~--~f~~p~  371 (411)
                                     ... .-++..++...+.+..+|+++|++|.+++...+++-+  .-|. .-+.+++..  .+. |.
T Consensus       217 ---------------~G~-~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~st--AGnAIcgpAAVaAadP~~~-~~  277 (312)
T PRK12460        217 ---------------AGL-AGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASST--AGNAVATPLAIAAADPSLA-PV  277 (312)
T ss_pred             ---------------hCh-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHH--hhHHHHHHHHHHHhchhHH-HH
Confidence                           111 1223334445677889999999997766654444322  3344 222223221  121 21


Q ss_pred             ---chHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 015189          372 ---VALPPAMSAVIMNIMGSTLGFFWRYIDPS  400 (411)
Q Consensus       372 ---~alp~~i~~l~q~i~~~~~a~~~~~~~~~  400 (411)
                         +..=++-..++-.+...++..+|.||.++
T Consensus       278 ~~~Ataqvaa~vivTail~P~~t~~~~k~~~~  309 (312)
T PRK12460        278 AAAATAQVAASVIVTAILTPLLTSWVAKKEAK  309 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               11112334466667777777788777543

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=98.16  E-value=1.4e-06  Score=87.80  Aligned_cols=227  Identities=20%  Similarity=0.223  Sum_probs=158.6

Q ss_pred             HHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCC
Q 015189          112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYT-IMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARG  190 (411)
Q Consensus       112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~v-l~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~G  190 (411)
                      ..|+..|++++.+++.++. ++++.+...+..++- ++|+..+.....+..++..+...+...++|++..++++..-.++
T Consensus        52 ~~~~~~~c~~~i~~~~~h~-~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~  130 (371)
T KOG2718|consen   52 FVMFSLGCNLTISLLWRHS-LRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKL  130 (371)
T ss_pred             Hhhcccccceeccchhhhh-cCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCc
Confidence            5689999999999988876 677677777778888 99999999998888888889999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHHH-HHHHHHh----CcccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhH
Q 015189          191 DVPLSIVMTMCTTLGAVLFTP-LLTKILA----GTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLF  265 (411)
Q Consensus       191 d~~la~~lt~~stlls~~~~P-l~l~ll~----g~~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~  265 (411)
                      |.+....++.-.+.+.+..+| ++++=+.    +.....+...-..-++...+.|.-.|..+++.+++....+...+..+
T Consensus       131 ~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~  210 (371)
T KOG2718|consen  131 DMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTI  210 (371)
T ss_pred             cHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHH
Confidence            999999999988888888887 3322111    11122222111122455678899999999998877666666666666


Q ss_pred             HHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHhhCCCccc
Q 015189          266 AVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAG--FFVGYLSAAICGFKEPQ  343 (411)
Q Consensus       266 s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~ll~~~~--f~~G~~l~r~lg~~~~~  343 (411)
                      +.++.+++.-..-....+.+.                     .+ +...+..  ..+..++  +.+|+++.+     +-.
T Consensus       211 stv~avi~~pl~s~~l~~~l~---------------------~~-d~~~v~~--s~~~vv~~pl~lG~lL~~-----~~~  261 (371)
T KOG2718|consen  211 STVLAVILTPLLSILLGRALI---------------------PV-DALGVIA--SILQVVGLPLALGLLLNK-----WFP  261 (371)
T ss_pred             HHHHHHHHHHHHHHhhchhhh---------------------cc-cchhhhh--hhhHHhHHHHHHHHHhcc-----cCc
Confidence            655544322111000011100                     00 1111122  3344555  778887763     456


Q ss_pred             hhhhhhhhhcchhHHHHHHHHHhcC
Q 015189          344 RRAISIEVGMQNSSLGVVLATAHFT  368 (411)
Q Consensus       344 ~~al~~~~g~rN~~Lai~la~~~f~  368 (411)
                      +++..++.++||.++...+-...|+
T Consensus       262 k~t~~i~~~~~~vsv~~t~l~~~~p  286 (371)
T KOG2718|consen  262 KRTVAIEPGLPPVSVCLTILCLAFP  286 (371)
T ss_pred             cceeeeecCCCchHHHhhhhhhcCC
Confidence            6889999999999999988887776

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=98.09  E-value=0.0013  Score=64.69  Aligned_cols=182  Identities=15%  Similarity=0.246  Sum_probs=113.5

Q ss_pred             HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch---hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189           68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA---SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (411)
Q Consensus        68 ~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~---~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (411)
                      |-++++ --.+.+=+++|+++--++|+.++...+....   -....+++.+|++|.+++.|+..+.+ ||--   .-++.
T Consensus         5 ~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~l-kkg~---~ll~~   80 (314)
T PF03812_consen    5 KTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVL-KKGG---VLLLV   80 (314)
T ss_pred             HhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHH-Hhhh---HHHHH
Confidence            444444 3456666788888899999986643321100   13568899999999999999999988 4332   22467


Q ss_pred             HHHHHHHHHHHHHHHcCCCh---HHHHHH---HHHccCchhhHHH--HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 015189          144 QYTIMPTSGVIVSKFLGLPP---ALSVGL---ILLSCCPGGTASN--VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTK  215 (411)
Q Consensus       144 ~~vl~Pll~~~l~~~~~l~~---~~~~Gl---iL~a~~P~~~~s~--v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~  215 (411)
                      ++++-=++++++.++++.+.   ....|+   .+++++-....+-  ..+..+|-+.+ .-...    +++...-|+...
T Consensus        81 K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D-~gA~~----i~sl~~GPf~tM  155 (314)
T PF03812_consen   81 KFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED-VGAFS----ILSLNDGPFFTM  155 (314)
T ss_pred             HHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH-hHHHH----HHHhhhhHHHHH
Confidence            88888888999999997653   122232   2333322222221  12333333333 33332    345555666665


Q ss_pred             HHhCc--ccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccch
Q 015189          216 ILAGT--YVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTP  263 (411)
Q Consensus       216 ll~g~--~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~  263 (411)
                      +..|.  ..++|+..+     .-.++|+++|+.+-..-|++.+.+.|-.+
T Consensus       156 l~LG~sG~a~ip~~~l-----v~~llP~iiG~iLGNLD~~~r~fl~~~~~  200 (314)
T PF03812_consen  156 LALGASGLANIPWMSL-----VAALLPIIIGMILGNLDPDFRKFLAPGVP  200 (314)
T ss_pred             HHHhhccccCCCHHHH-----HHHHHHHHHHHHHhcCCHHHHHHHhcCCC
Confidence            55443  356777554     56889999999999888888877766543

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=97.78  E-value=0.00086  Score=65.65  Aligned_cols=182  Identities=14%  Similarity=0.143  Sum_probs=110.8

Q ss_pred             HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch---hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189           68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA---SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (411)
Q Consensus        68 ~~l~~~-~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~---~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (411)
                      |.++++ --.+.+=+++|+++.-++|+.+..+.+....   -....+++.+|++|.+++.|+-.+.+ +|.-   .-+..
T Consensus         5 ~~i~kIPGG~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l-~kg~---~l~~~   80 (314)
T TIGR00793         5 RSIEKIPGGMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVL-RKSG---TLVVT   80 (314)
T ss_pred             hhhccCCCceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhh-hhcc---eeeeH
Confidence            334444 2334444678888888999986553322100   13568899999999999999988887 4332   22356


Q ss_pred             HHHHHHHHHHHHHHHcCCCh---HHHHHHHHHccCchhhHHH--HH---HHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 015189          144 QYTIMPTSGVIVSKFLGLPP---ALSVGLILLSCCPGGTASN--VV---TLIARGDVPLSIVMTMCTTLGAVLFTPLLTK  215 (411)
Q Consensus       144 ~~vl~Pll~~~l~~~~~l~~---~~~~GliL~a~~P~~~~s~--v~---t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~  215 (411)
                      ++++-=++++.++++++.+.   ....|+-.++..-.-+.+|  .|   +..+|-+.+-+. ..    +.++---|+...
T Consensus        81 K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA-~~----i~sl~~GPf~TM  155 (314)
T TIGR00793        81 KIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGA-FV----LMSLESGPLMTM  155 (314)
T ss_pred             HHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhh-hh----hhhhccCcHHHH
Confidence            88888888999999998654   2222333333222222222  33   444444433222 22    233444566666


Q ss_pred             HHhCcc--cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccch
Q 015189          216 ILAGTY--VPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTP  263 (411)
Q Consensus       216 ll~g~~--v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~  263 (411)
                      +..|..  .++++..     +.-.++|+++|+.+-..-|++.+.+.|-.+
T Consensus       156 i~LG~sGlA~ip~~~-----lv~~ilPlliG~ilGNLD~~~r~fl~~~~~  200 (314)
T TIGR00793       156 VILGTAGIASFEPHV-----FVGAVLPFLVGFALGNLDPELRDFFSKAVQ  200 (314)
T ss_pred             HHHhhccCCCCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHhccCCC
Confidence            555532  4677654     457889999999999888888777766543

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.55  E-value=0.11  Score=51.90  Aligned_cols=110  Identities=15%  Similarity=0.216  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH-HH
Q 015189          106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-VV  184 (411)
Q Consensus       106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~-v~  184 (411)
                      ......++=..+|.+++++.+.+.. +.+..+....+...+..-+.+|.+.+.-+.|..    --+.+++|+|.+.. ++
T Consensus        27 r~~~q~ilG~~iG~~~t~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~----TA~~~~~PGg~s~m~~l  101 (318)
T PF05145_consen   27 RNAGQAILGVSIGSSFTPEVLAQLA-SWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA----TAFFASMPGGLSEMVAL  101 (318)
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh----HHHHHcCCccHHHHHHH
Confidence            3456666667789999999998875 555555555555666666667777777776643    45789999999877 57


Q ss_pred             HHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 015189          185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGT  220 (411)
Q Consensus       185 t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~  220 (411)
                      ++..|+|...-+....+=-++-++++|+....+.+.
T Consensus       102 a~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~  137 (318)
T PF05145_consen  102 AEEYGADTRRVALVQSLRLLLVVLLVPFIASLLGGG  137 (318)
T ss_pred             HHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999887653

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=97.54  E-value=0.11  Score=52.18  Aligned_cols=108  Identities=20%  Similarity=0.255  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH-HHH
Q 015189          107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-VVT  185 (411)
Q Consensus       107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~-v~t  185 (411)
                      .....+.=..+|.+++.+++.... +++-.....++......-+.+|.+.+.-..|...    -..+++|||.+.. .++
T Consensus        61 ~~~q~ilG~~ig~~~t~s~l~~l~-~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA  135 (352)
T COG3180          61 KAGQVILGIMIGASLTPSVLDTLK-SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIA  135 (352)
T ss_pred             HHHHHHHHHHHhhhcCHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHH
Confidence            334444445689999999998775 6676666666666666667788887765555433    3578999999988 579


Q ss_pred             HHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 015189          186 LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG  219 (411)
Q Consensus       186 ~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g  219 (411)
                      +-.|.|.++...+..+=-+.-..+.|+....+.+
T Consensus       136 ~d~gAd~~~VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         136 QDYGADLRLVALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999989889999999998874

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=97.54  E-value=0.015  Score=58.20  Aligned_cols=281  Identities=17%  Similarity=0.211  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhccch----hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Q 015189           77 YPLYVTVGGVIACLKPSAFGWFVQRGPA----SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSG  152 (411)
Q Consensus        77 ~p~~i~~~~llgl~~P~~~~~~~~~~p~----~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~  152 (411)
                      ..+=+++|.++.-++|+... +.+....    -....+++.+|++|.+++.++....+ +|.-.+   ++.++.+-=+++
T Consensus        17 m~vpl~~g~~i~tf~P~~~~-~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l-~~g~~l---~~~k~~~~~~~~   91 (326)
T PRK05274         17 MLVPLLLGALINTFAPGALY-FGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVL-KKGGTL---LLTKFAVAALVG   91 (326)
T ss_pred             eeHHHHHHHHHHHhCCccee-eCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhh-hhchhH---HHHHHHHHHHHH
Confidence            34446778888888898532 2211000    13568889999999999999988877 433222   345676666677


Q ss_pred             HHHHHHcCCCh---HHHHHHHHH------ccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCc--c
Q 015189          153 VIVSKFLGLPP---ALSVGLILL------SCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGT--Y  221 (411)
Q Consensus       153 ~~l~~~~~l~~---~~~~GliL~------a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~--~  221 (411)
                      +.++++++.+.   ....|...+      .-.=++......+...+....-+...      ++.-.-|....++.+.  .
T Consensus        92 ~~~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~~d~ga~i~------lsl~~Gp~~tM~lL~aagl  165 (326)
T PRK05274         92 VIAGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTKEDAGAFVL------MSLEDGPFMTMLALGAAGL  165 (326)
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCcchHHH------HHHhhhHHHHHHHHHhhCc
Confidence            77777776432   222222211      22222333333333322211111111      2222235444444332  1


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhH
Q 015189          222 VPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLI  301 (411)
Q Consensus       222 v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~  301 (411)
                      .+++..++.     -+++|+++|+.++...+++.+...+-.+.+--.....  +. ...|.+++.+              
T Consensus       166 a~~p~~~li-----~allplliG~~lgnl~~~l~~~~~~Gi~~lLp~~~~~--lG-~~l~lq~i~~--------------  223 (326)
T PRK05274        166 ASFPPPALV-----GAVLPLLVGFILGNLDPELRQFLGKAVPVLIPFFAFA--LG-NGIDLGTIIT--------------  223 (326)
T ss_pred             ccCCCchhh-----HHHHHHHHHHHHHhHHHhhHHHhcCCcEEEHHHHHHH--Hh-cceeHhHHHh--------------
Confidence            345554442     2229999999999987777777666544311111111  00 0112222211              


Q ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHH-HHHHHH--hcC--CccchHHH
Q 015189          302 SRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLG-VVLATA--HFT--SSMVALPP  376 (411)
Q Consensus       302 ~~l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~La-i~la~~--~f~--~p~~alp~  376 (411)
                          ..+    .-+++ .+..++..+..+|+..|+++.+++ ..-.+..++..|...+ .+++..  .+.  .+.+++-+
T Consensus       224 ----~G~----~GilL-~~~~~~~t~~~~~~~~Rl~~~~~g-~~g~a~~ttaG~aic~pAAvaa~~p~~~~~~~~at~~V  293 (326)
T PRK05274        224 ----AGL----SGILL-GVAVVAVTGIPLYLADRLIGGGNG-VAGAAAGSTAGNAVATPAAVAAADPSFAPFAPAATAQV  293 (326)
T ss_pred             ----cCC----cchhh-hhhHhhccchhhHhHhheeecCCC-cchHHHHHHHHHHHHHHHHHHhhccccccchHhHHHHH
Confidence                011    11222 233445667778999998864333 2334444455565322 223321  221  12233333


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCC
Q 015189          377 AMSAVIMNIMGSTLGFFWRYIDPS  400 (411)
Q Consensus       377 ~i~~l~q~i~~~~~a~~~~~~~~~  400 (411)
                      +...++-.+...++..+|.||..+
T Consensus       294 A~~vivt~il~P~l~~~~~k~~~~  317 (326)
T PRK05274        294 AAAVIVTAILAPILTAWWSKRVGK  317 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333345556666666667665544

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.30  E-value=0.39  Score=52.41  Aligned_cols=123  Identities=19%  Similarity=0.142  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhc--cchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Q 015189           77 YPLYVTVGGVIACLKPSAFGWFVQR--GPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI  154 (411)
Q Consensus        77 ~p~~i~~~~llgl~~P~~~~~~~~~--~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~  154 (411)
                      ....++.|+++|   |..+.+..+-  ........+.++||..|+.++++++++.. |  +.+..+ ..|.++.-+++++
T Consensus        32 vlgyilaGillG---P~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~-~--~~~~~g-~~qv~~~~~~~~~  104 (621)
T PRK03562         32 VLGYLIAGCIIG---PWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLR-R--SIFGGG-ALQMVACGGLLGL  104 (621)
T ss_pred             HHHHHHHHHHhC---cccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH-H--HHHHHH-HHHHHHHHHHHHH
Confidence            444455666666   4433332210  00123578889999999999999998652 2  223332 3455554455566


Q ss_pred             HHHHcCCCh--HHHHHHHHHccCchhhHHHHHHHHcCCChh---hHHHHHHHHHHHHH
Q 015189          155 VSKFLGLPP--ALSVGLILLSCCPGGTASNVVTLIARGDVP---LSIVMTMCTTLGAV  207 (411)
Q Consensus       155 l~~~~~l~~--~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~---la~~lt~~stlls~  207 (411)
                      +++.++.+.  .+..|..+..++ ++....++...-.-+..   .+.....+.-++++
T Consensus       105 ~~~~~g~~~~~al~ig~~la~SS-taiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i  161 (621)
T PRK03562        105 FCMLLGLRWQVALLIGLGLALSS-TAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAI  161 (621)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH
Confidence            667776654  333444443332 33334445444333333   34444445554443

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=97.28  E-value=0.29  Score=50.41  Aligned_cols=134  Identities=19%  Similarity=0.286  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHH-HHHHHH-HcCCCh--HHHHHHHHHccCchhhHH
Q 015189          106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS-GVIVSK-FLGLPP--ALSVGLILLSCCPGGTAS  181 (411)
Q Consensus       106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll-~~~l~~-~~~l~~--~~~~GliL~a~~P~~~~s  181 (411)
                      -...+.++||..|+..|.+++++.. | ..  ..+...--+..|++ +..... .++.+.  ....|..+.. ..++..+
T Consensus        62 aelGvi~LlF~~GLE~~~~~l~~~~-~-~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~-sS~~i~~  136 (397)
T COG0475          62 AELGVVFLLFLIGLEFDLERLKKVG-R-SV--GLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALAL-SSTAIVL  136 (397)
T ss_pred             HHHhHHHHHHHHHHCcCHHHHHHhc-h-hh--hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH-HHHHHHH
Confidence            3568889999999999999998763 2 21  22222223444533 322222 355443  3444443322 2333444


Q ss_pred             HHHHHHcCCChh---hHHHHHHHHHHHHHHHHHHHHHHHhCcccccC-hHHHHHHHHHHHHHHHHHH
Q 015189          182 NVVTLIARGDVP---LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVD-AVKLSISTLQIVVAPVLLG  244 (411)
Q Consensus       182 ~v~t~~a~Gd~~---la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd-~~~l~~~ll~~vllPl~lG  244 (411)
                      .++..+-+=+.+   .......+.-+.++....+...+..+...+.+ ...+...+.....+=+..|
T Consensus       137 ~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g  203 (397)
T COG0475         137 KILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG  203 (397)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence            455554333333   44455555666666666665555444333333 2444444444444444444

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.21  E-value=0.44  Score=51.19  Aligned_cols=81  Identities=25%  Similarity=0.342  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q 015189           77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS  156 (411)
Q Consensus        77 ~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~  156 (411)
                      ....++.|+++|-...+........ ......++.++||..|++++++++++.  +  +....+...++++.-++++++.
T Consensus        33 ivg~IlaGillGp~~lg~~~~~~~~-~~la~lGli~llF~~Gle~d~~~l~~~--~--~~~~~~~~~~~~~~~~~~~~~~  107 (558)
T PRK10669         33 LVGYLLAGVLAGPFTPGFVADTKLA-PELAELGVILLMFGVGLHFSLKDLMAV--K--SIAIPGAIAQIAVATLLGMALS  107 (558)
T ss_pred             HHHHHHHHHhhCccccccccchHHH-HHHHHHHHHHHHHHhHhcCCHHHHHHH--h--hHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666663222211111100 113466888999999999999998754  2  2233344456565555667677


Q ss_pred             HHcCCC
Q 015189          157 KFLGLP  162 (411)
Q Consensus       157 ~~~~l~  162 (411)
                      +.++.+
T Consensus       108 ~~~~~~  113 (558)
T PRK10669        108 AVLGWS  113 (558)
T ss_pred             HHhCCC
Confidence            777654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.10  E-value=0.61  Score=50.73  Aligned_cols=97  Identities=18%  Similarity=0.158  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHccCchhhHHHH
Q 015189          106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPP--ALSVGLILLSCCPGGTASNV  183 (411)
Q Consensus       106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~--~~~~GliL~a~~P~~~~s~v  183 (411)
                      ...++.++||..|+.++++++++.. |  +.+..+ ..|.++.-++.+++...++.+.  ....|+.+ +.+.++....+
T Consensus        60 aelGvv~LLF~iGLel~~~~l~~~~-~--~~~~~g-~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~l-a~SSTaiv~~i  134 (601)
T PRK03659         60 SELGVVFLMFIIGLELNPSKLWQLR-R--SIFGVG-AAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGL-AMSSTAMALQL  134 (601)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHH-H--HHHHHH-HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3568889999999999999998652 2  223332 3344443334444555566553  23334222 22334444445


Q ss_pred             HHHHcCCChh---hHHHHHHHHHHHHH
Q 015189          184 VTLIARGDVP---LSIVMTMCTTLGAV  207 (411)
Q Consensus       184 ~t~~a~Gd~~---la~~lt~~stlls~  207 (411)
                      ....-.-+..   ++.....+.-+.++
T Consensus       135 L~e~~~~~t~~G~~~l~vll~~Di~~i  161 (601)
T PRK03659        135 MREKGMNRSESGQLGFSVLLFQDLAVI  161 (601)
T ss_pred             HHHcccccCchHHHHHHHHHHHHHHHH
Confidence            5554433333   33444444544333

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=96.91  E-value=0.017  Score=58.57  Aligned_cols=74  Identities=22%  Similarity=0.359  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchh-HHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 015189          312 LGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSSMVALPPAMSAVIMNIM  386 (411)
Q Consensus       312 ~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~-~Lai~la~~~f~~p~~alp~~i~~l~q~i~  386 (411)
                      .+.+.+...+...+++.+++...|.++.+++++.....+++..|. .+++.+....|++...+. ..+|.+.+++.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~-~~~~~~~~~i~  136 (385)
T PF03547_consen   62 LWFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGERGVAY-AIIFDVVNNII  136 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcchhhhh-ehHHHHhhHHH
Confidence            344455556667888899999999999999999999999999999 699999999997532332 23344444443

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PRK05326 potassium/proton antiporter; Reviewed

Probab=96.89  E-value=0.87  Score=49.05  Aligned_cols=175  Identities=15%  Similarity=0.153  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHhhcccccchhh-hccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHH--H
Q 015189           76 LYPLYVTVGGVIACLKPSAFGWFV-QRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS--G  152 (411)
Q Consensus        76 ~~p~~i~~~~llgl~~P~~~~~~~-~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll--~  152 (411)
                      .....+++|+++|-..+.....-. .........++.++||..|++++++++++.. +  +.+..+.+.  ++.|.+  +
T Consensus        32 ~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~-~--~~~~la~~g--v~~t~~~~g  106 (562)
T PRK05326         32 SLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPAL-G--PALSLATLG--VLITAGLTG  106 (562)
T ss_pred             HHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHH-H--HHHHHHHHH--HHHHHHHHH
Confidence            456666777777743322111000 0001134678999999999999999998765 2  223222221  122322  3


Q ss_pred             HHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCC----ChhhHHHH---HHHHHHHHHHHHHHHHHHHhCcccccC
Q 015189          153 VIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARG----DVPLSIVM---TMCTTLGAVLFTPLLTKILAGTYVPVD  225 (411)
Q Consensus       153 ~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~G----d~~la~~l---t~~stlls~~~~Pl~l~ll~g~~v~vd  225 (411)
                      +...++++.+  ...++++-++.-.+..+.++.-+.+.    |..+...+   ..++-..+++++=+.+.+..+...+.+
T Consensus       107 ~~~~~l~g~~--~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~  184 (562)
T PRK05326        107 LFAHWLLGLD--WLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLS  184 (562)
T ss_pred             HHHHHHhcCC--HHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcch
Confidence            3334556654  34445544444444434443333222    22332222   233445565554444444433322222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 015189          226 AVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVV  258 (411)
Q Consensus       226 ~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i  258 (411)
                      . ......+..+.+-+++|....+......++.
T Consensus       185 ~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~  216 (562)
T PRK05326        185 W-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRI  216 (562)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2 2233334444555555555555444443443

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=96.53  E-value=2  Score=48.54  Aligned_cols=69  Identities=4%  Similarity=0.069  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHHHHHHHHhh
Q 015189          326 GFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-----SSMVALPPAMSAVIMNIMGSTLGFFWR  395 (411)
Q Consensus       326 ~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~-----~p~~alp~~i~~l~q~i~~~~~a~~~~  395 (411)
                      -+..+++.++.+|.+.+++.++++....|- ...+.++.....     +.....-+++..+...+.+.++..+|+
T Consensus       364 K~~g~~l~a~~~g~~~~eal~lG~lm~~kG-~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~  437 (832)
T PLN03159        364 KIMGTIIIAFFYTMPFREGITLGFLMNTKG-LVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR  437 (832)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhccc-HHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            345567777889999999999888776664 455545443222     122222122222345556666665544

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=96.47  E-value=0.22  Score=44.54  Aligned_cols=107  Identities=20%  Similarity=0.278  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH-H
Q 015189          105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-V  183 (411)
Q Consensus       105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~-v  183 (411)
                      ....+..++-...|++.+.+++++.. |.....+...+....+.=..++.+.+..+.|...    .+++++|+|.... .
T Consensus        48 ~~~~~qviiG~~iG~~f~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~  122 (156)
T TIGR03082        48 LLALAQVVIGILIGSRFTREVLAELK-RLWPAALLSTVLLLALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAA  122 (156)
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHH
Confidence            44567777778899999999998874 4444444433444444444566677777776543    3688999999877 4


Q ss_pred             HHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 015189          184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKI  216 (411)
Q Consensus       184 ~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~l  216 (411)
                      .+...|.|...-.....+=.++-.+..|++..+
T Consensus       123 ~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       123 LAAELGADVAFVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            678889999999999988888888888887653

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=96.12  E-value=0.19  Score=50.07  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHH-hhCCCccchhhhhhhhhcchh-HHHHHHHHHhcCCc
Q 015189          320 LLLHFAGFFVGYLSAA-ICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSS  370 (411)
Q Consensus       320 ~ll~~~~f~~G~~l~r-~lg~~~~~~~al~~~~g~rN~-~Lai~la~~~f~~p  370 (411)
                      .......+.++|.++| .++.|++++.+..+.++..|+ -+|++++...||+.
T Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~  127 (321)
T TIGR00946        75 WGAFSGSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEE  127 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHhccc
Confidence            3344567888999998 778898999999999999998 58999999999753

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=95.67  E-value=4.8  Score=45.05  Aligned_cols=55  Identities=13%  Similarity=0.011  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHHHHhhcccccchhh-----hccchhHHHHHHHHHHHHcccCChHHHHHH
Q 015189           75 SLYPLYVTVGGVIACLKPSAFGWFV-----QRGPASYSLSLGLIMLAMGLTLELKDLISL  129 (411)
Q Consensus        75 ~~~p~~i~~~~llgl~~P~~~~~~~-----~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~  129 (411)
                      ....+.+++|+++|...-+.+....     .......-+.+.+.+|..|++++.+.+++.
T Consensus        39 s~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~   98 (810)
T TIGR00844        39 GESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKH   98 (810)
T ss_pred             cHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence            3456667777777754322222111     000001236888999999999999988754

This model is specific for the fungal members of this family.

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=95.31  E-value=3  Score=40.32  Aligned_cols=170  Identities=18%  Similarity=0.256  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhc--cchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHH--H
Q 015189           76 LYPLYVTVGGVIACLKPSAFGWFVQR--GPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPT--S  151 (411)
Q Consensus        76 ~~p~~i~~~~llgl~~P~~~~~~~~~--~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pl--l  151 (411)
                      ....-++.|+++|   |..+....+.  ........+.++||..|+++|.+++++.. |  +....+. .. .+.|.  +
T Consensus        18 ~~v~~il~GillG---p~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~-~--~~~~~~~-~~-~~~~~~~~   89 (273)
T TIGR00932        18 SVLGYLLAGVLIG---PSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLR-K--AAFGVGV-LQ-VLVPGVLL   89 (273)
T ss_pred             HHHHHHHHHHHhC---cccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-H--HHHHHHH-HH-HHHHHHHH
Confidence            3455566677776   4333222110  01123578889999999999999998764 2  2233322 22 23452  2


Q ss_pred             HHHHHHHcCCChHHHHHHHHHccCchhhHHH---HHHHH--cCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhCcccccC
Q 015189          152 GVIVSKFLGLPPALSVGLILLSCCPGGTASN---VVTLI--ARGD-VPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVD  225 (411)
Q Consensus       152 ~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~---v~t~~--a~Gd-~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~vd  225 (411)
                      ++...+.++.+..  .++++-++...+..+.   ++..+  .+.+ ..+......++-+++++..-+......+..  .+
T Consensus        90 ~~~~~~~~~~~~~--~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~  165 (273)
T TIGR00932        90 GLLLGHLLGLALG--AAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TE  165 (273)
T ss_pred             HHHHHHHHCCCHH--HHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cc
Confidence            3445566665432  3333333333222222   23222  2322 334566667788888887766665543321  12


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 015189          226 AVKLSISTLQIVVAPVLLGSYMQSAFPAAVKV  257 (411)
Q Consensus       226 ~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~  257 (411)
                      ...........+..-+..+...|+..+...++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (273)
T TIGR00932       166 HVALALLLLKVFLAFLLLVLLGRWLLRPVLRL  197 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222233333444555555554443333

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=94.83  E-value=0.26  Score=46.84  Aligned_cols=87  Identities=21%  Similarity=0.275  Sum_probs=70.3

Q ss_pred             HHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 015189          129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVL  208 (411)
Q Consensus       129 ~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~  208 (411)
                      .+||+++.+..++.+--++--..++.+++.++++++....+.-=+.  +++.+.-.++..|||.++++..+.++-+++..
T Consensus        82 ~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkSv--TtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~  159 (226)
T TIGR00659        82 QIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKSV--TTPIAMHVSEMIGGIPAVTAVFVILTGLLGTV  159 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHHh--hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            3346677788887776666667888999999999988776654443  45555568999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 015189          209 FTPLLTKIL  217 (411)
Q Consensus       209 ~~Pl~l~ll  217 (411)
                      +-|.++.++
T Consensus       160 ~g~~ll~~~  168 (226)
T TIGR00659       160 FGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHc
Confidence            999998877

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PRK10711 hypothetical protein; Provisional

Probab=94.55  E-value=0.51  Score=45.03  Aligned_cols=87  Identities=17%  Similarity=0.186  Sum_probs=72.7

Q ss_pred             HHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 015189          129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVL  208 (411)
Q Consensus       129 ~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~  208 (411)
                      .+||+++.+..++..--++--..++.+++.+++|++....+.==+.  +++.+.-.++..||+.++++..+.++-+++.+
T Consensus        83 ~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~sLta~~ViitGi~Ga~  160 (231)
T PRK10711         83 QIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSV--TTPIAMAVGGSIGGIPAISAVCVIFVGILGAV  160 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            3346778888888887777778899999999999998887765544  55555668999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 015189          209 FTPLLTKIL  217 (411)
Q Consensus       209 ~~Pl~l~ll  217 (411)
                      +-|.++.++
T Consensus       161 ~g~~llk~~  169 (231)
T PRK10711        161 FGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHc
Confidence            999999876

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=94.55  E-value=0.47  Score=44.84  Aligned_cols=86  Identities=22%  Similarity=0.290  Sum_probs=71.7

Q ss_pred             HHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHH
Q 015189          130 FMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLF  209 (411)
Q Consensus       130 ~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~  209 (411)
                      ++|+++.+..++...-++.-+..+.+++.+++|++....+.-=+.  +++.+.-.++..|||.++.+..+.++-+++..+
T Consensus        73 l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSV--TtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~  150 (215)
T PF04172_consen   73 LKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSV--TTPIAIEISEQIGGIPSLTAVFVVITGILGAVL  150 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHh--hHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHh
Confidence            346778888888887777777888999999999998887765544  555555689999999999999999999999999


Q ss_pred             HHHHHHHH
Q 015189          210 TPLLTKIL  217 (411)
Q Consensus       210 ~Pl~l~ll  217 (411)
                      -|.++.++
T Consensus       151 g~~llk~~  158 (215)
T PF04172_consen  151 GPPLLKLL  158 (215)
T ss_pred             HHHHHhHc
Confidence            99998876

>PRK15086 ethanolamine utilization protein EutH; Provisional

Probab=94.42  E-value=6.5  Score=39.90  Aligned_cols=53  Identities=15%  Similarity=0.216  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHhCcccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 015189          203 TLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVK  256 (411)
Q Consensus       203 tlls~~~~Pl~l~ll~g~~v~vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~  256 (411)
                      .+.+++++|+-... .|-...+|+..++.+++-++++-++++..+++.-.+..+
T Consensus       144 il~GiitIPiG~~v-ggl~~g~~~~~il~NL~Piii~~illa~GL~~~p~~mIk  196 (372)
T PRK15086        144 VLAGIITIPIGCLI-GGLVAGFDFALILRNLIPVIIFAILLALGLKFIPEKMIK  196 (372)
T ss_pred             HHHHhHhhcHHHHH-HHHHHhCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555554321 122246888899999999999999999988876544433

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=94.40  E-value=1.3  Score=44.30  Aligned_cols=109  Identities=19%  Similarity=0.249  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHH-H
Q 015189          105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-V  183 (411)
Q Consensus       105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~-v  183 (411)
                      ....+..++=...|++.+.+++++.. |.........+.-....=+.++.+.++.+.|    ..-.+++.+|+|.... .
T Consensus       205 l~~~aqv~iG~~iG~~f~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~----~~t~~La~aPGGl~eM~l  279 (318)
T PF05145_consen  205 LVNAAQVLIGASIGSRFTRETLRELR-RLLPPALLSTLLLLALCALFAWLLSRLTGID----FLTALLATAPGGLAEMAL  279 (318)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHhCCccHHHHHH
Confidence            44555566667799999999998764 3223233333334444445567777777766    4556889999999988 5


Q ss_pred             HHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015189          184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA  218 (411)
Q Consensus       184 ~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~  218 (411)
                      .+...|.|.++...+..+=.+.-.++.|.+..++.
T Consensus       280 ~A~~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~~~  314 (318)
T PF05145_consen  280 IALALGADVAFVAAHQVVRLLFVLLLAPFIARWLR  314 (318)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888999999999999998888899999888764

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=94.36  E-value=0.57  Score=44.72  Aligned_cols=87  Identities=11%  Similarity=0.045  Sum_probs=72.0

Q ss_pred             HHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 015189          129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVL  208 (411)
Q Consensus       129 ~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~  208 (411)
                      .+||+++.+..++.+--++--+.++.+++++++|++....+.==+.  +++.+.-.++..||+.++++..+.++-+++.+
T Consensus        88 ~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKSV--TtPIAm~is~~iGG~psLtA~~ViitGi~Gai  165 (232)
T PRK04288         88 VLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQAA--TTAIALPVSAGIGGIKEITSFAVIFNAVIIYA  165 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            3346678888888887777778899999999999987776654444  55555668999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 015189          209 FTPLLTKIL  217 (411)
Q Consensus       209 ~~Pl~l~ll  217 (411)
                      +-|.++.++
T Consensus       166 ~g~~llk~~  174 (232)
T PRK04288        166 LGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHc
Confidence            999999876

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=94.35  E-value=0.51  Score=46.89  Aligned_cols=106  Identities=15%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH---ccCchhhHHH-
Q 015189          107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILL---SCCPGGTASN-  182 (411)
Q Consensus       107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~---a~~P~~~~s~-  182 (411)
                      ...+.+..|..|.+++++++.+.-   ...+..++++-. +.=+.++.+.+.++.|...  |..+-   +.+=|+.++. 
T Consensus       195 ~f~I~f~~f~LG~~lnl~~I~~~G---~~GIlL~v~vv~-~t~~~~~~i~rllg~~~~~--g~li~stAGnAIcgpAAVa  268 (312)
T PRK12460        195 PLLIPFFAFALGAGINLSMLLQAG---LAGILLGVLVTI-VTGFFNIFADRLVGGTGIA--GAAASSTAGNAVATPLAIA  268 (312)
T ss_pred             eEeHHHHHHHhcCCeeHHHHHHhC---hHHHHHHHHHHH-HHHHHHHHHHHHhCCChhH--HHHHHHHhhHHHHHHHHHH
Confidence            448888889999999999997652   455666555433 3335677777888876654  33332   1111222222 


Q ss_pred             HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015189          183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA  218 (411)
Q Consensus       183 v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~  218 (411)
                      -..-..+...+.++..+..+.+...++.|++..++.
T Consensus       269 AadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~  304 (312)
T PRK12460        269 AADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVA  304 (312)
T ss_pred             HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122333445666666677777777777777766654

>COG0679 Predicted permeases [General function prediction only]

Probab=94.24  E-value=1.9  Score=42.86  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHH-hhCCCccchhhhhhhhhcchh-HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHH
Q 015189          323 HFAGFFVGYLSAA-ICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLG  391 (411)
Q Consensus       323 ~~~~f~~G~~l~r-~lg~~~~~~~al~~~~g~rN~-~Lai~la~~~f~~p~~alp~~i~~l~q~i~~~~~a  391 (411)
                      ....+..++++.| .++.+++++.......+..|+ -++..++...||+.-.+... +|...+++.-..+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~-i~~~~~~~~~~~~g  143 (311)
T COG0679          74 TLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAV-IFLIIGLFLMFTLG  143 (311)
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHH-HHHHHHHHHHHHHH
Confidence            3444444555554 455566667778888888898 58899999999866555554 45555554444443

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=94.15  E-value=6.8  Score=39.04  Aligned_cols=137  Identities=17%  Similarity=0.128  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHh-hcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q 015189           75 SLYPLYVTVGGVIAC-LKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGV  153 (411)
Q Consensus        75 ~~~p~~i~~~~llgl-~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~  153 (411)
                      ....+++++|++++- .+. .-.++.+-..+.....+-.-...+|.+++..|+.+.-   ++.+..... .....=.+++
T Consensus        27 ~~~~~AillG~~i~n~~~~-~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G---~~~~~~~~~-~v~~~~~~~~  101 (305)
T PF03601_consen   27 GALLIAILLGMLIGNLFFG-LPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALG---WKGLLIIII-VVILTFLLTY  101 (305)
T ss_pred             cHHHHHHHHHHHHhhhccC-CcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhC---ccHHHHHHH-HHHHHHHHHH
Confidence            346778888888883 321 1122221001112356777778899999999998753   444443333 3334445677


Q ss_pred             HHH-HHcCCChHHHHHHHHHccCchhhHHHHH----HHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189          154 IVS-KFLGLPPALSVGLILLSCCPGGTASNVV----TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (411)
Q Consensus       154 ~l~-~~~~l~~~~~~GliL~a~~P~~~~s~v~----t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll  217 (411)
                      .++ +.+++|++ ..-++-.+.+=||.++..-    .+--+.|.++++..+.+-+.++++..|..-..+
T Consensus       102 ~lg~r~~~l~~~-~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l  169 (305)
T PF03601_consen  102 WLGRRLFGLDRK-LAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL  169 (305)
T ss_pred             HHHHHHhCCCHH-HHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence            777 99999865 3334445555566655532    223356789999999999999999999997655

; GO: 0016021 integral to membrane

>COG2855 Predicted membrane protein [Function unknown]

Probab=93.04  E-value=11  Score=37.95  Aligned_cols=135  Identities=21%  Similarity=0.195  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q 015189           77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS  156 (411)
Q Consensus        77 ~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~  156 (411)
                      +.+++++|+++|. +++.......-..+.-..++-.-....|.++++.|+.+.-   .+.+. ...+.....=++++.++
T Consensus        40 l~lAIllGi~l~~-l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G---~~~v~-~~~~~l~~t~~~~~~lg  114 (334)
T COG2855          40 LTLAILLGILLGI-LPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVG---GSGVL-IIAITLSSTFLFAYFLG  114 (334)
T ss_pred             HHHHHHHHHHHhc-cccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcC---ccHHH-HHHHHHHHHHHHHHHHH
Confidence            6778888888883 3333322221011233457777778899999999998753   33332 22334444446788899


Q ss_pred             HHcCCChHHHHHHHHHccCchhhHHHHHH----HHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189          157 KFLGLPPALSVGLILLSCCPGGTASNVVT----LIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (411)
Q Consensus       157 ~~~~l~~~~~~GliL~a~~P~~~~s~v~t----~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll  217 (411)
                      +.+++|...+ -++-+++.=||.++..-+    .--+-|++.++..+.+-..++++..|....++
T Consensus       115 ~~lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l  178 (334)
T COG2855         115 KLLGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL  178 (334)
T ss_pred             HHhCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence            9999987543 345555666776655432    23345788888888888888999999987765

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=92.13  E-value=7.9  Score=39.24  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHH
Q 015189          104 ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNV  183 (411)
Q Consensus       104 ~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v  183 (411)
                      |...++-.++....|++.+...+++.. |--....+..+..+.+.=.+++.+.+..+.|..    ..+++.+|+|.....
T Consensus       237 wl~~va~~~iG~~IG~~f~~~~l~~~~-r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma  311 (352)
T COG3180         237 WLLAVAQALIGALIGSRFDRSILREAK-RLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMA  311 (352)
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHhH-hhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHH
Confidence            444556666777799999999998763 322334444444555555667777777676643    457899999998875


Q ss_pred             -HHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015189          184 -VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA  218 (411)
Q Consensus       184 -~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~  218 (411)
                       .+...+-|.++-.++..+=-++-.++.|.+.+.+.
T Consensus       312 ~~A~~l~ad~a~V~a~q~lRll~il~i~p~l~r~l~  347 (352)
T COG3180         312 AIAAALGADPAFVMALQVLRLLFILLLGPALARFLS  347 (352)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             45555569999999999888877777888877654

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=92.02  E-value=2.1  Score=40.60  Aligned_cols=88  Identities=27%  Similarity=0.345  Sum_probs=69.7

Q ss_pred             HHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 015189          129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVL  208 (411)
Q Consensus       129 ~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~  208 (411)
                      .+||+|+.+..+.++--++-=..++++++.|+++++....++==+.  +++.+.-.++..||-.++.+..+.++-+++.+
T Consensus        85 ~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~PkSv--TTpiAm~vs~~iGGip~ltav~Vi~tGi~Gav  162 (230)
T COG1346          85 LIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKSV--TTPIAMEVSESIGGIPALTAVFVILTGILGAV  162 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhccccc--ccHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            3357888898888876666667899999999999987665542222  34444457999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 015189          209 FTPLLTKILA  218 (411)
Q Consensus       209 ~~Pl~l~ll~  218 (411)
                      +-|.++..+.
T Consensus       163 lg~~llk~~~  172 (230)
T COG1346         163 LGPLLLKLLR  172 (230)
T ss_pred             HHHHHHHHhc
Confidence            9999988773

>TIGR00698 conserved hypothetical integral membrane protein

Probab=92.01  E-value=6.5  Score=39.69  Aligned_cols=106  Identities=13%  Similarity=0.134  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHccCchhhHHHHH-H
Q 015189          108 LSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS-KFLGLPPALSVGLILLSCCPGGTASNVV-T  185 (411)
Q Consensus       108 ~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~-~~~~l~~~~~~GliL~a~~P~~~~s~v~-t  185 (411)
                      ..+-.-...+|.+++++|+.+.-   ++.+......-.... ++++.++ +.+++|++. .-++-.+++=||.++.+- .
T Consensus        66 ~lLr~gIVLlG~~l~~~~i~~~G---~~~l~~~~~~v~~~~-~~~~~~g~k~l~l~~~~-~~Lia~GtsICGaSAi~A~a  140 (335)
T TIGR00698        66 FLLRIGITLYGFRLTFPYIADVG---PNEIVADTLILTSTF-FLTVFLGSSRLKLDKQM-SILLGAGSSICGAAAVAAIE  140 (335)
T ss_pred             HHHHHHHHHHCccccHHHHHHhh---HHHHHHHHHHHHHHH-HHHHHHHHHHhCCChhH-HHHHHcchhHHHHHHHHHhc
Confidence            46777778899999999997653   344433222222222 3445566 788887653 223334444455554432 2


Q ss_pred             ---HHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015189          186 ---LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA  218 (411)
Q Consensus       186 ---~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~  218 (411)
                         +--+-|.++++..+.+-+.++++..|.+-.++.
T Consensus       141 ~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~  176 (335)
T TIGR00698       141 PVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS  176 (335)
T ss_pred             cccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence               223457889999999999999999999977664

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=88.53  E-value=28  Score=34.76  Aligned_cols=132  Identities=21%  Similarity=0.375  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHc
Q 015189           80 YVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL  159 (411)
Q Consensus        80 ~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~  159 (411)
                      .++.|+.+|-+-|+...- ..+.|-.....+.++||+.|+..+.+|+...  | ... +-+-+.|..+.-+.++++.+..
T Consensus        36 yL~AGv~~gpftpGFvad-~~La~~LAelGViLLmFgvGLhfslkdLLav--k-~iA-ipgAl~qia~at~lg~gL~~~l  110 (408)
T COG4651          36 YLLAGVLAGPFTPGFVAD-QTLAPELAELGVILLMFGVGLHFSLKDLLAV--K-AIA-IPGALAQIALATLLGMGLSSLL  110 (408)
T ss_pred             HHHHHHhcCCCCCCcccc-hhHHHHHHHhhHHHHHHhcchheeHHHHhhH--H-HHh-cchHHHHHHHHHHHHhHHHHHc
Confidence            344455555444543211 1111223456888999999999999999764  1 222 3445668888888899999987


Q ss_pred             CCChHHHHHHHHHccCchhhHHHHH-HHHc-------CCChhhHH-HHHHHHHHHHHHHHHHHHHHHh
Q 015189          160 GLPPALSVGLILLSCCPGGTASNVV-TLIA-------RGDVPLSI-VMTMCTTLGAVLFTPLLTKILA  218 (411)
Q Consensus       160 ~l~~~~~~GliL~a~~P~~~~s~v~-t~~a-------~Gd~~la~-~lt~~stlls~~~~Pl~l~ll~  218 (411)
                      +.+  .-.|++.--|...+..+... +..-       +|..+..- .+-=+..++..+..|..-..+.
T Consensus       111 gws--~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g  176 (408)
T COG4651         111 GWS--FGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG  176 (408)
T ss_pred             CCC--cccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence            643  23333333343344333332 2222       33333221 2223445566667777766664

>PF15201 Rod_cone_degen: Progressive rod-cone degeneration

Probab=88.08  E-value=0.46  Score=33.58  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhhccCCCCCCCCCCccC
Q 015189          385 IMGSTLGFFWRYIDPSDSKTSPKTVD  410 (411)
Q Consensus       385 i~~~~~a~~~~~~~~~~~~~~~~~~~  410 (411)
                      +.-+.+|.+||||..++-++||+++|
T Consensus         6 fllstlamlwrrrfanrvqpeps~vd   31 (54)
T PF15201_consen    6 FLLSTLAMLWRRRFANRVQPEPSGVD   31 (54)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCC
Confidence            34567889999999999999999987

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=86.70  E-value=11  Score=37.58  Aligned_cols=46  Identities=13%  Similarity=0.221  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHH-HhhCCCccchhhhhhhhhcchhHHHHHHHH
Q 015189          319 VLLLHFAGFFVGYLSA-AICGFKEPQRRAISIEVGMQNSSLGVVLAT  364 (411)
Q Consensus       319 ~~ll~~~~f~~G~~l~-r~lg~~~~~~~al~~~~g~rN~~Lai~la~  364 (411)
                      ..+.....+.++|+++ |++|+|++.+.-++-.++.-=.+-.++++.
T Consensus        89 ~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~  135 (305)
T PF03601_consen   89 IIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAP  135 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcc
Confidence            3444567788899999 999999887776666555554444444443

; GO: 0016021 integral to membrane

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=84.60  E-value=48  Score=33.49  Aligned_cols=100  Identities=22%  Similarity=0.384  Sum_probs=65.5

Q ss_pred             HHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCC
Q 015189          112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGD  191 (411)
Q Consensus       112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd  191 (411)
                      +++++.|.-.|+.   ..+ .|||.++.|...|+.+.  .++..+..++.++..+..+-+.+.+=+.++-++-..++ -|
T Consensus        74 LIF~GIGAmtDFg---pll-anP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA-p~  146 (360)
T PF03977_consen   74 LIFMGIGAMTDFG---PLL-ANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLA-PH  146 (360)
T ss_pred             HHHHHHhHHHhhH---HHH-hCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-HH
Confidence            4456788776655   445 68999999999999876  56777777889998998888888876555544433333 33


Q ss_pred             hhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 015189          192 VPLSIVMTMCTT-LGAVLFTPLLTKILA  218 (411)
Q Consensus       192 ~~la~~lt~~st-lls~~~~Pl~l~ll~  218 (411)
                      .--.++..+-|- -+.++.-|-.+.++.
T Consensus       147 LlgpIaVaAYsYMaLvPiiqPpimklLt  174 (360)
T PF03977_consen  147 LLGPIAVAAYSYMALVPIIQPPIMKLLT  174 (360)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHhc
Confidence            333333333332 245556677777775

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=84.35  E-value=3.5  Score=41.46  Aligned_cols=106  Identities=14%  Similarity=0.192  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChH---HHHHHHHHccCchhhHHH-
Q 015189          107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPA---LSVGLILLSCCPGGTASN-  182 (411)
Q Consensus       107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~~~~l~~~---~~~GliL~a~~P~~~~s~-  182 (411)
                      .+.+.+..|..|.+++.+++.+.   .+..++++.. +.++.+...+...++++.++.   .+.+. -.+.+=|+.++. 
T Consensus       202 ~~lLp~~~~~lG~~l~lq~i~~~---G~~GilL~~~-~~~~t~~~~~~~~Rl~~~~~g~~g~a~~t-taG~aic~pAAva  276 (326)
T PRK05274        202 PVLIPFFAFALGNGIDLGTIITA---GLSGILLGVA-VVAVTGIPLYLADRLIGGGNGVAGAAAGS-TAGNAVATPAAVA  276 (326)
T ss_pred             EEEHHHHHHHHhcceeHhHHHhc---CCcchhhhhh-HhhccchhhHhHhheeecCCCcchHHHHH-HHHHHHHHHHHHH
Confidence            34777778888888888877653   3444544333 455566667777788855443   11111 111111122111 


Q ss_pred             HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189          183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (411)
Q Consensus       183 v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll  217 (411)
                      -..-..+...+-++..+....+++.++.|+...++
T Consensus       277 a~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~  311 (326)
T PRK05274        277 AADPSFAPFAPAATAQVAAAVIVTAILAPILTAWW  311 (326)
T ss_pred             hhccccccchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222244555555555555556666666666554

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=83.83  E-value=54  Score=33.51  Aligned_cols=100  Identities=15%  Similarity=0.243  Sum_probs=62.4

Q ss_pred             HHHHHHcccCChHHHHHHHHcCchHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCC
Q 015189          112 LIMLAMGLTLELKDLISLFMQRPLSILF-GCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARG  190 (411)
Q Consensus       112 ~~mf~~Gl~l~~~~l~~~~~~~p~~l~~-~l~~~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~G  190 (411)
                      +++++.|.-.|+.-   .+ .|||..+. |...|+.+.  ..+..+..+|.+...+..+-+.+.+=+.++-++-+.++ -
T Consensus       110 LIFlGIGAMtDFgp---ll-anP~~~ll~gaaAQ~GiF--~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLA-p  182 (399)
T TIGR03136       110 ILFFGIGAMSDISF---IL-ARPWASITVALFAEMGTF--ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLILA-K  182 (399)
T ss_pred             HHHHhccHHhcchH---HH-hChHHHHHHHHHHHhhHH--HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHhhh-h
Confidence            45667887776554   44 68998888 789998876  56666677888888888888888776555444433333 2


Q ss_pred             ChhhHHHHHHHHH-HHHHHHHHHHHHHHh
Q 015189          191 DVPLSIVMTMCTT-LGAVLFTPLLTKILA  218 (411)
Q Consensus       191 d~~la~~lt~~st-lls~~~~Pl~l~ll~  218 (411)
                      |.--+++..+-|- -+.++.-|-.+.++.
T Consensus       183 ~Llg~IaVAAYsYMaLVPiiqPpimklLt  211 (399)
T TIGR03136       183 DLFVPISIIAYLYLSLTYAGYPYLIKLLV  211 (399)
T ss_pred             HhHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence            2222222222221 234555676777765

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=83.50  E-value=57  Score=33.50  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHH----HHHHHHHHHHHHHHHH-cCCChHHHHHHHHHccCchhhH
Q 015189          106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCA----AQYTIMPTSGVIVSKF-LGLPPALSVGLILLSCCPGGTA  180 (411)
Q Consensus       106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~----~~~vl~Pll~~~l~~~-~~l~~~~~~GliL~a~~P~~~~  180 (411)
                      ..+.++++++.+-++.|.+++.+.-   +| .+..++    ...+-.+ +++.+..- ++ +......-.+.+. =.|.+
T Consensus        57 ~~~~vPlai~LlLl~~Dlr~i~~~g---~~-~l~~F~~~~~g~viG~~-va~~l~~~~l~-~~~wk~ag~l~gs-yiGGs  129 (378)
T PF05684_consen   57 WTYLVPLAIPLLLLSADLRRILRLG---GR-LLLAFLIGAVGTVIGAV-VAFLLFGGFLG-PEGWKIAGMLAGS-YIGGS  129 (378)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHhh---HH-HHHHHHHHHHHHHHHHH-HHHHHHhhccc-chHHHHHHHHHhc-ccCch
Confidence            3667777788888999988887653   23 222222    2222232 23333322 23 2333333334443 34444


Q ss_pred             HH--HHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015189          181 SN--VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (411)
Q Consensus       181 s~--v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll  217 (411)
                      .|  .+.+..+-|.++-..+.+..++.+.+-+.+++.+-
T Consensus       130 ~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l~  168 (378)
T PF05684_consen  130 VNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLALP  168 (378)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44  46777888888888899999999988887776543

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=83.09  E-value=70  Score=34.24  Aligned_cols=52  Identities=12%  Similarity=0.043  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHH
Q 015189           77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLF  130 (411)
Q Consensus        77 ~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~  130 (411)
                      ....++.|+++|...-.......+  .......++.++|..|.+++.+++++..
T Consensus        25 ~v~lil~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~   76 (525)
T TIGR00831        25 PIALILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENF   76 (525)
T ss_pred             HHHHHHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            445556677777431110001111  1134578889999999999999998653

This model is specific for the bacterial members of this family.

>PRK09903 putative transporter YfdV; Provisional

Probab=81.10  E-value=60  Score=32.08  Aligned_cols=248  Identities=15%  Similarity=0.113  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHccCch-hhHHH
Q 015189          105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSK-FLGLPPALSVGLILLSCCPG-GTASN  182 (411)
Q Consensus       105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~-~~~l~~~~~~GliL~a~~P~-~~~s~  182 (411)
                      .+.++++.++|....+.+.++....    ....... ...++..-++++.+.+ .++.+........+..+.+- |-...
T Consensus        40 v~~v~lPalif~s~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~  114 (314)
T PRK09903         40 VLNYALPAALFVSITRANREMIFAD----TRLTLVS-LVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGF  114 (314)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHhh----hhHHHHH-HHHHHHHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccH
Confidence            4578889899888887765554322    2223222 2233333355666654 44555433333333333332 22222


Q ss_pred             -HHHHHcCCChhh-HHHHHHHHHHHHHHHHHHHHHHHhCccc--cc--ChHHHHHHH-HHHHHHHHHHHHHHHHh---hh
Q 015189          183 -VVTLIARGDVPL-SIVMTMCTTLGAVLFTPLLTKILAGTYV--PV--DAVKLSIST-LQIVVAPVLLGSYMQSA---FP  252 (411)
Q Consensus       183 -v~t~~a~Gd~~l-a~~lt~~stlls~~~~Pl~l~ll~g~~v--~v--d~~~l~~~l-l~~vllPl~lG~~lr~~---~~  252 (411)
                       +..... ||.+. ++...........+..+.....+....-  +-  ...+..+++ ---.++..++|+.++..   .|
T Consensus       115 Pl~~~~~-G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~nP~iia~~~gl~~~l~~i~lP  193 (314)
T PRK09903        115 AVLDPIY-GDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKIP  193 (314)
T ss_pred             HHHHHHc-CchhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHhchHHHHHHHHHHHHHcCCCCC
Confidence             344444 55432 2222222333455566666665532110  11  111222221 12355666777776654   35


Q ss_pred             hhHHHhcccchhHHHHHH---HHHHHHHHhhhhHHHhhhhhccccccchhhHHHhhhhhhhhHH-HHHHHHHHHHHHHHH
Q 015189          253 AAVKVVTPFTPLFAVLMS---SLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELG-VIILSVLLLHFAGFF  328 (411)
Q Consensus       253 ~~~~~i~~~~~~~s~~~l---~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~l~~~~~~~~~-~i~l~~~ll~~~~f~  328 (411)
                      +..++   ....++....   ++.+...++..  ....         +            .+.+ ..+.=.++.+++.  
T Consensus       194 ~~i~~---~l~~lg~~~~PlaL~~iG~~L~~~--~~~~---------~------------~~~~~~~~~Kli~~P~i~--  245 (314)
T PRK09903        194 AAWDP---TFNLIAKANSGVAVFAAGLTLAAH--KFEF---------S------------AEIAYNTFLKLILMPLAL--  245 (314)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHhhc--cccc---------c------------HHHHHHHHHHHHHHHHHH--
Confidence            44333   3333332221   11222222211  0100         0            0111 1111112223333  


Q ss_pred             HHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcCCccchH-HHHHHHHHHHHHHH
Q 015189          329 VGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVAL-PPAMSAVIMNIMGS  388 (411)
Q Consensus       329 ~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~~p~~al-p~~i~~l~q~i~~~  388 (411)
                        +.+...++++.++..+..+++++--...+..+|..|-.|+..+- -+.+..+.-.+.-.
T Consensus       246 --~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlp  304 (314)
T PRK09903        246 --LLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAP  304 (314)
T ss_pred             --HHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence              33334468899999999999999999999999998877765332 23334444433333

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=80.34  E-value=2.1  Score=43.42  Aligned_cols=147  Identities=16%  Similarity=0.111  Sum_probs=96.3

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHhhcccccchhhhccc---------hhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHH
Q 015189           68 YLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGP---------ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSIL  138 (411)
Q Consensus        68 ~~l~~~~~~~p~~i~~~~llgl~~P~~~~~~~~~~p---------~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~  138 (411)
                      ..++.+-.=..++.+++.++|..-|-.-..++.-.|         ..-...++.++...|-++-.+- ++.- .+.+.++
T Consensus       240 ~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~-~ss~-~~~~~ii  317 (408)
T KOG2722|consen  240 VILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGL-RSSA-LKTSVII  317 (408)
T ss_pred             hhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCc-hhcc-cCceEEE
Confidence            344444444566777777777655432111110000         0113578888999898887653 3332 3455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc------C-CChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHH
Q 015189          139 FGCAAQYTIMPTSGVIVSKFL------G-LPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP  211 (411)
Q Consensus       139 ~~l~~~~vl~Pll~~~l~~~~------~-l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~P  211 (411)
                      ..++.+++++|+.+.++....      + .||-+...+++..++|++....-+|++.|--.+-+......+-.++.+-.-
T Consensus       318 giii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~lt  397 (408)
T KOG2722|consen  318 GIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLT  397 (408)
T ss_pred             EEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHH
Confidence            555669999999999887642      3 578899999999999999999999999888777777766666666655555


Q ss_pred             HHHHH
Q 015189          212 LLTKI  216 (411)
Q Consensus       212 l~l~l  216 (411)
                      +|..+
T Consensus       398 vw~~~  402 (408)
T KOG2722|consen  398 VWSVF  402 (408)
T ss_pred             HHHHH
Confidence            54433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	411
3zux_A	332	Crystal Structure Of A Bacterial Homologue Of The B		3e-33
3zuy_A	323	Crystal Structure Of A Bacterial Homologue Of The B		8e-33

>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/323 (33%), Positives = 171/323 (52%), Gaps = 36/323 (11%)
Query: 92  PSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS 151
           P  F W    GP    L LG+IM  MGLTL+  D   LF + P  ++ G  AQ+ IMP +
Sbjct: 35  PDTFKW---AGPYIPWL-LGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIAQFAIMPAT 89
Query: 152 GVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP 211
              +SK L LP  ++VG+IL+ CCPGGTASNV+T +ARG+V LS+ +T  +TL + L TP
Sbjct: 90  AWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTP 149
Query: 212 LLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSS 271
            +  +LAG  + + A  + +S +++V+ P++LG  +     +  + +T   PL +V    
Sbjct: 150 AIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSV---- 205
Query: 272 LLACSVFSENLVRLKSSVVGAALTXXXXXXXXXXXXXXGELGVIILSVLLLHFA-GFFVG 330
                     +V +  +VVGA+                 E G++I +V++LH   G+ +G
Sbjct: 206 --------AAIVLIIGAVVGASKGKIM------------ESGLLIFAVVVLHNGIGYLLG 245
Query: 331 YLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSSMVALPPAMSAVIMNIMGST 389
           + +A   G     ++A++IEVGMQNS     + A     + +VA+P A+ +V  NI GS 
Sbjct: 246 FFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSL 305
Query: 390 LGFFW-----RYIDPSDSKTSPK 407
           L  +W     ++  P D   S  
Sbjct: 306 LATYWAAKAGKHKKPLDRAGSEN 328

>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323

Iteration: 1
 Score =  137 bits (346), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 147/266 (55%), Gaps = 30/266 (11%)
Query: 92  PSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS 151
           P  F W    GP    L LG+IM  MGLTL+  D   LF + P  ++ G  AQ+ IMP +
Sbjct: 30  PDTFKW---AGPYIPWL-LGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIAQFAIMPAT 84
Query: 152 GVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP 211
             ++SK L LP  ++VG+IL+ CCPGGTASNV+T +ARG+V LS+ +T  +TL + L TP
Sbjct: 85  AWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTP 144
Query: 212 LLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSS 271
            +  +LAG  + + A  + +S +++V+ P++LG  +     +  + +T   PL +V    
Sbjct: 145 AIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSV---- 200
Query: 272 LLACSVFSENLVRLKSSVVGAALTXXXXXXXXXXXXXXGELGVIILSVLLLHFA-GFFVG 330
                     +V +  +VVGA+                 E G++I +V++LH   G+ +G
Sbjct: 201 --------AAIVLIIGAVVGASKGKIM------------ESGLLIFAVVVLHNGIGYLLG 240
Query: 331 YLSAAICGFKEPQRRAISIEVGMQNS 356
           + +A   G     ++ ++IEVGMQNS
Sbjct: 241 FFAAKWTGLPYDAQKTLTIEVGMQNS 266

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	411
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	2e-88
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score =  270 bits (693), Expect = 2e-88
 Identities = 107/347 (30%), Positives = 172/347 (49%), Gaps = 29/347 (8%)

Query: 66  WEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKD 125
              + S     + L+  +    A   P  F W            LG+IM  MGLTL+  D
Sbjct: 9   LSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG----PYIPWLLGIIMFGMGLTLKPSD 64

Query: 126 LISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVT 185
              LF + P  ++ G  AQ+ IMP +   +SK L LP  ++VG+IL+ CCPGGTASNV+T
Sbjct: 65  FDILF-KHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMT 123

Query: 186 LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQIVVAPVLLGS 245
            +ARG+V LS+ +T  +TL + L TP +  +LAG  + + A  + +S +++V+ P++LG 
Sbjct: 124 YLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGL 183

Query: 246 YMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIK 305
            +     +  + +T   PL +V    L+  +V   +  ++  S                 
Sbjct: 184 IVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES----------------- 226

Query: 306 SILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATA 365
                   +I   V+L +  G+ +G+ +A   G     ++A++IEVGMQNS L   LA A
Sbjct: 227 ------GLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAA 280

Query: 366 HFTSS-MVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVDK 411
           HF ++ +VA+P A+ +V  NI GS L  +W        K   +   +
Sbjct: 281 HFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKPLDRAGSE 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 56/419 (13%), Positives = 97/419 (23%), Gaps = 156/419 (37%)

Query: 30  TPLAISSSPPSFK----NLQITRCVNENSQLLP--VTEAKPRWEYLLSTAASLYPL---- 79
           +P+      PS        Q  R  N+N       V+  +P  +  L  A  L  L    
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQA--LLELRPAK 151

Query: 80  YVTVGGVIACLKPS---------------AFG--WFVQRGPASYSLSLGLIMLAMGLTLE 122
            V + GV+   K                  F   W          L+L        +   
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----------LNLKNCNSPETVLEM 201

Query: 123 LKDLISLFMQRPLSILFGCAAQYTIMPTSGVI--VSKFLGLPP---ALSVGLILLSCCPG 177
           L+ L+        S      +    +    +   + + L   P    L   L+L      
Sbjct: 202 LQKLLYQIDPNWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYENCL---LVL------ 250

Query: 178 GTASNV--VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQ 235
               NV         ++        C  L                          ++T  
Sbjct: 251 ---LNVQNAKAWNAFNL-------SCKIL--------------------------LTTRF 274

Query: 236 IVVAPVLLGSYMQSAFPAAVKVVTPFTP-----LFA-VL---MSSL--LACSVFSENLVR 284
             V   L  +       +        TP     L    L      L     +        
Sbjct: 275 KQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP----- 327

Query: 285 LKSSVVGAALTSDLSLISRIKSILSGELGVII-LSVLLLHFAGFFVGYLSAAICGFKEPQ 343
            + S++  ++   L+     K +   +L  II  S+ +L  A +   +   ++  F    
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPP-- 383

Query: 344 RRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS 402
                                                   +I    L   W  +  SD 
Sbjct: 384 ---------------SA-----------------------HIPTILLSLIWFDVIKSDV 404

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	411
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=8.6e-53  Score=418.41  Aligned_cols=316  Identities=34%  Similarity=0.558  Sum_probs=286.0

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHHcCchHHHHHHHH
Q 015189           64 PRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (411)
Q Consensus        64 ~~~~~~l~~~~~~~p~~i~~~~llgl~~P~~~~~~~~~~p~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (411)
                      +.++|+.+++++++++++++++++|+++|+.+.++++    .+.++++++||.+|++++.+|+++.+ ||||.+..++++
T Consensus         7 ~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~~----~i~~~l~~~mf~~G~~l~~~~l~~~~-~~~~~~~~~l~~   81 (332)
T 3zux_A            7 NILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGP----YIPWLLGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIA   81 (332)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGGG----GHHHHHHHHHHHHHHHCCGGGGHHHH-HSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhHH----HHHHHHHHHHHHHHhCCCHHHHHHHH-hCcHHHHHHHHH
Confidence            3567889999999999999999999999999888764    56789999999999999999999998 899999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHccCchhhHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 015189          144 QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP  223 (411)
Q Consensus       144 ~~vl~Pll~~~l~~~~~l~~~~~~GliL~a~~P~~~~s~v~t~~a~Gd~~la~~lt~~stlls~~~~Pl~l~ll~g~~v~  223 (411)
                      |++++|+++|+++++++++++++.|+++++||||+++|++||+++|||.++++.++.+||+++++++|+++.++.|++++
T Consensus        82 ~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~  161 (332)
T 3zux_A           82 QFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE  161 (332)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhcccchhHHHHHHHHHHHHHHhhhhHHHhhhhhccccccchhhHHH
Q 015189          224 VDAVKLSISTLQIVVAPVLLGSYMQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISR  303 (411)
Q Consensus       224 vd~~~l~~~ll~~vllPl~lG~~lr~~~~~~~~~i~~~~~~~s~~~l~liv~~v~~~~~~~i~~~i~~~~~~~~~~~~~~  303 (411)
                      +|+.+++.+++.++++|+++|+++|+++|++.+++++..+.++.++++++++.+++.|.+.+.+.               
T Consensus       162 v~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~---------------  226 (332)
T 3zux_A          162 IQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES---------------  226 (332)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH---------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc---------------
Confidence            99999999999999999999999999999999999999999999999888888888877655431               


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhhhhhhhhcchhHHHHHHHHHhcC-CccchHHHHHHHHH
Q 015189          304 IKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-SSMVALPPAMSAVI  382 (411)
Q Consensus       304 l~~~~~~~~~~i~l~~~ll~~~~f~~G~~l~r~lg~~~~~~~al~~~~g~rN~~Lai~la~~~f~-~p~~alp~~i~~l~  382 (411)
                              ...++..+++++.++|.+||+++|++|++++|++|+++|+|+||+++|+++|..+|+ +|++++|.++|++|
T Consensus       227 --------~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~  298 (332)
T 3zux_A          227 --------GLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVW  298 (332)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHH
T ss_pred             --------cHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence                    123556678889999999999999999999999999999999999999999999997 68999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCc
Q 015189          383 MNIMGSTLGFFWRYIDPSDSKTSPKT  408 (411)
Q Consensus       383 q~i~~~~~a~~~~~~~~~~~~~~~~~  408 (411)
                      |++.+++++.+|+|++++++ ++++|
T Consensus       299 q~i~~~~la~~~~~~~~~~~-~~~~~  323 (332)
T 3zux_A          299 HNISGSLLATYWAAKAGKHK-KPLDR  323 (332)
T ss_dssp             HHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHcCccccC-Cchhh
Confidence            99999999999998875554 44444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00