Citrus Sinensis ID: 015220
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 411 | ||||||
| 224127814 | 474 | predicted protein [Populus trichocarpa] | 0.985 | 0.854 | 0.911 | 0.0 | |
| 147825153 | 481 | hypothetical protein VITISV_027347 [Viti | 0.968 | 0.827 | 0.910 | 0.0 | |
| 225448335 | 482 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.825 | 0.910 | 0.0 | |
| 297736651 | 464 | unnamed protein product [Vitis vinifera] | 0.968 | 0.857 | 0.910 | 0.0 | |
| 356500805 | 479 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.837 | 0.900 | 0.0 | |
| 359486434 | 484 | PREDICTED: uncharacterized protein LOC10 | 0.929 | 0.789 | 0.932 | 0.0 | |
| 356553007 | 479 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.837 | 0.896 | 0.0 | |
| 357464341 | 484 | hypothetical protein MTR_3g093520 [Medic | 0.982 | 0.834 | 0.896 | 0.0 | |
| 217071708 | 484 | unknown [Medicago truncatula] | 0.982 | 0.834 | 0.894 | 0.0 | |
| 388504284 | 484 | unknown [Medicago truncatula] | 0.982 | 0.834 | 0.891 | 0.0 |
| >gi|224127814|ref|XP_002329184.1| predicted protein [Populus trichocarpa] gi|222870965|gb|EEF08096.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/406 (91%), Positives = 390/406 (96%), Gaps = 1/406 (0%)
Query: 5 GGGGRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQ 64
GGGGRRI+ SPRPC+G+RV+AKKR R++ G DGFVNSVKKLQRREI SKRDR+FTMTDAQ
Sbjct: 3 GGGGRRITVSPRPCNGKRVVAKKRGRSFGGGDGFVNSVKKLQRREICSKRDRSFTMTDAQ 62
Query: 65 ERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRET 124
ERFRNIRLQEEYDT+DPKGHC+MVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RET
Sbjct: 63 ERFRNIRLQEEYDTYDPKGHCTMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRET 122
Query: 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184
NQRICFLNVT DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CRSTRIEYIRRG+PDAGF
Sbjct: 123 NQRICFLNVTPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGQPDAGF 182
Query: 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPG 244
ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI+DKNVQEIKISPG
Sbjct: 183 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIADKNVQEIKISPG 242
Query: 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304
IMLLI TK+SG VPL+ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI
Sbjct: 243 IMLLILTKSSGCVPLEILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 302
Query: 305 LDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHP 364
LDVRNF+LTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHP
Sbjct: 303 LDVRNFDLTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHP 362
Query: 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
DCNTNNIYITSDQDLIISYCKADSDDPL+EGN G + +S ++ C
Sbjct: 363 DCNTNNIYITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKC 408
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147825153|emb|CAN75497.1| hypothetical protein VITISV_027347 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/403 (91%), Positives = 383/403 (95%), Gaps = 5/403 (1%)
Query: 8 GRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
G+RIS SPRP SGRRV+AKKR RN DGFVNSVKKLQRREI SKRDR+F+M+DAQERF
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRN----DGFVNSVKKLQRREICSKRDRSFSMSDAQERF 58
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RNIRLQEEYDTHDPKGHC++VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RETNQR
Sbjct: 59 RNIRLQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQR 118
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
ICFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CR+TRIEYIRRGKPDAGFALF
Sbjct: 119 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALF 178
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK+VQEIKISPGIML
Sbjct: 179 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIML 238
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIFTKAS HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 239 LIFTKASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 298
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN
Sbjct: 299 RNSELKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 358
Query: 368 TNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
TNNIYITSDQDLIISYCKADSDDPL+EGN G + +S ++ C
Sbjct: 359 TNNIYITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKC 401
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225448335|ref|XP_002266566.1| PREDICTED: uncharacterized protein LOC100263968 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/403 (91%), Positives = 383/403 (95%), Gaps = 5/403 (1%)
Query: 8 GRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
G+RIS SPRP SGRRV+AKKR RN DGFVNSVKKLQRREI SKRDR+F+M+DAQERF
Sbjct: 4 GKRISVSPRPGSGRRVVAKKRPRN----DGFVNSVKKLQRREICSKRDRSFSMSDAQERF 59
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RNIRLQEEYDTHDPKGHC++VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RETNQR
Sbjct: 60 RNIRLQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQR 119
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
ICFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CR+TRIEYIRRGKPDAGFALF
Sbjct: 120 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALF 179
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK+VQEIKISPGIML
Sbjct: 180 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIML 239
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIFTKAS HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 240 LIFTKASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 299
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN
Sbjct: 300 RNSELKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 359
Query: 368 TNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
TNNIYITSDQDLIISYCKADSDDPL+EGN G + +S ++ C
Sbjct: 360 TNNIYITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKC 402
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736651|emb|CBI25522.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/403 (91%), Positives = 383/403 (95%), Gaps = 5/403 (1%)
Query: 8 GRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
G+RIS SPRP SGRRV+AKKR RN DGFVNSVKKLQRREI SKRDR+F+M+DAQERF
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRN----DGFVNSVKKLQRREICSKRDRSFSMSDAQERF 58
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RNIRLQEEYDTHDPKGHC++VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RETNQR
Sbjct: 59 RNIRLQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQR 118
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
ICFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CR+TRIEYIRRGKPDAGFALF
Sbjct: 119 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALF 178
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK+VQEIKISPGIML
Sbjct: 179 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIML 238
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIFTKAS HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 239 LIFTKASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 298
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN
Sbjct: 299 RNSELKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 358
Query: 368 TNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
TNNIYITSDQDLIISYCKADSDDPL+EGN G + +S ++ C
Sbjct: 359 TNNIYITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKC 401
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500805|ref|XP_003519221.1| PREDICTED: uncharacterized protein LOC100777719 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/404 (90%), Positives = 378/404 (93%), Gaps = 3/404 (0%)
Query: 6 GGGRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQE 65
GGGRRI+ SPRPC GRRV+AKKR R DGFVNSVKKLQRREISS RDRAF+MTDAQE
Sbjct: 3 GGGRRITVSPRPCCGRRVVAKKRPR---LVDGFVNSVKKLQRREISSNRDRAFSMTDAQE 59
Query: 66 RFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETN 125
RFRNIRLQEEYDTHDPKG S VL FLRKRSKIIEIVAARDIVFALAQSGVCAAF RETN
Sbjct: 60 RFRNIRLQEEYDTHDPKGPSSAVLQFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETN 119
Query: 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185
+RICFLNV+ DEVIRSLFYNKNNDSLITVSVYASDN+SSL+CRSTRIEYIRR KPDAGFA
Sbjct: 120 ERICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKCRSTRIEYIRRVKPDAGFA 179
Query: 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGI 245
LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY+MLYSISDKNVQEIKISPGI
Sbjct: 180 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYSMLYSISDKNVQEIKISPGI 239
Query: 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 305
MLLIFTK+S HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL
Sbjct: 240 MLLIFTKSSSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 299
Query: 306 DVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 365
DVR ELTEVSR+EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD
Sbjct: 300 DVRTSELTEVSRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 359
Query: 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409
CNTNNIYITSDQDLIISYCKADSDD L+EGNG + VS ++ C
Sbjct: 360 CNTNNIYITSDQDLIISYCKADSDDSLSEGNGSINVSNILTGKC 403
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486434|ref|XP_002266694.2| PREDICTED: uncharacterized protein LOC100263968 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/386 (93%), Positives = 371/386 (96%), Gaps = 4/386 (1%)
Query: 8 GRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
G+RIS SPRP SGRRV+AKKR RN DGFVNSVKKLQRREI SKRDR+F+M+DAQERF
Sbjct: 4 GKRISVSPRPGSGRRVVAKKRPRN----DGFVNSVKKLQRREICSKRDRSFSMSDAQERF 59
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RNIRLQEEYDTHDPKGHC++VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RETNQR
Sbjct: 60 RNIRLQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQR 119
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
ICFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CR+TRIEYIRRGKPDAGFALF
Sbjct: 120 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALF 179
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK+VQEIKISPGIML
Sbjct: 180 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIML 239
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIFTKAS HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 240 LIFTKASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 299
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN
Sbjct: 300 RNSELKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 359
Query: 368 TNNIYITSDQDLIISYCKADSDDPLA 393
TNNIYITSDQDLIISYCKADSDDP
Sbjct: 360 TNNIYITSDQDLIISYCKADSDDPFV 385
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553007|ref|XP_003544850.1| PREDICTED: uncharacterized protein LOC100819178 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/404 (89%), Positives = 379/404 (93%), Gaps = 3/404 (0%)
Query: 6 GGGRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQE 65
GGGRRI+ SPRPC GRRV+AKKR R DGFVNSVKKLQRREISS RDRAF+MTDAQE
Sbjct: 3 GGGRRITVSPRPCCGRRVVAKKRPR---LVDGFVNSVKKLQRREISSNRDRAFSMTDAQE 59
Query: 66 RFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETN 125
RFRNIRLQEEYDTHDPKG S+VL FLRKRSKIIEIVAARDIVFALAQSGVCAAF RETN
Sbjct: 60 RFRNIRLQEEYDTHDPKGPSSVVLSFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETN 119
Query: 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185
+RICFLNV+ DEVIRSLFYNKNNDSLITVSVYASD++SSL+CRSTRIEYIRR KPDAGFA
Sbjct: 120 ERICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRVKPDAGFA 179
Query: 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGI 245
LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY+MLYSISDKNVQEIKISPGI
Sbjct: 180 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYSMLYSISDKNVQEIKISPGI 239
Query: 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 305
MLLIF K+S HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL
Sbjct: 240 MLLIFAKSSSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 299
Query: 306 DVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 365
DVR FELTEVSR+EFMTPSAFIFLYENQLFLTFRN+TVAVWNFRGELVTSFEDHLLWHPD
Sbjct: 300 DVRTFELTEVSRSEFMTPSAFIFLYENQLFLTFRNQTVAVWNFRGELVTSFEDHLLWHPD 359
Query: 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409
CNTNNIYITSDQDLIISYCKADSDD L+EGNG + VS ++ C
Sbjct: 360 CNTNNIYITSDQDLIISYCKADSDDSLSEGNGSINVSNILTGKC 403
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464341|ref|XP_003602452.1| hypothetical protein MTR_3g093520 [Medicago truncatula] gi|355491500|gb|AES72703.1| hypothetical protein MTR_3g093520 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/407 (89%), Positives = 378/407 (92%), Gaps = 3/407 (0%)
Query: 6 GGGRRISASPRPCSGRRVL--AKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDA 63
G GRRI+ SPRPC GRRV AKK R DGFVNSVKKLQRREISSKRDRAF+MTDA
Sbjct: 3 GTGRRITVSPRPCCGRRVRVDAKKTGRGGRTVDGFVNSVKKLQRREISSKRDRAFSMTDA 62
Query: 64 QERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRE 123
QERFRNIRLQEEYDTHDPKG S+VLPFLRKRSKIIEIVAA+DIVFALAQSGVCAAF RE
Sbjct: 63 QERFRNIRLQEEYDTHDPKGPSSVVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFSRE 122
Query: 124 TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183
TNQRICFLNV+ DEVIRSLFYNKNNDSLITVSVYASD++SSL+CRSTRIEYIRRGKPDAG
Sbjct: 123 TNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAG 182
Query: 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 243
FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP
Sbjct: 183 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 242
Query: 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303
GIMLLIF KAS HVPLKILSIEDGTVLKSFNHLL+RNKKVDFIEQFNEKLLVKQENENLQ
Sbjct: 243 GIMLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQ 302
Query: 304 ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 363
ILDVR FELTEVSR+EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH
Sbjct: 303 ILDVRTFELTEVSRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 362
Query: 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
PDCNTNNIYITSDQDLIISYCKADSDD L EGN G + VS ++ C
Sbjct: 363 PDCNTNNIYITSDQDLIISYCKADSDDSLTEGNAGSINVSNILSGKC 409
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217071708|gb|ACJ84214.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/407 (89%), Positives = 378/407 (92%), Gaps = 3/407 (0%)
Query: 6 GGGRRISASPRPCSGRRVL--AKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDA 63
G GRRI+ SPRPC GRRV AKK R DGFVNSVKKLQRREISSKRDRAF+MTDA
Sbjct: 3 GTGRRITVSPRPCCGRRVRVDAKKTGRGGRTVDGFVNSVKKLQRREISSKRDRAFSMTDA 62
Query: 64 QERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRE 123
QERFRNIRLQEEYDTHDPKG S+VLPFLRKRSKIIEIVAA+DIVFALAQSGVCAAF RE
Sbjct: 63 QERFRNIRLQEEYDTHDPKGPSSVVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFSRE 122
Query: 124 TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183
TNQRICFLNV+ DEVIRSLFYNKNNDSLITVSVYASD++SSL+CRSTRIEYIRRGKPDAG
Sbjct: 123 TNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAG 182
Query: 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 243
FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP
Sbjct: 183 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 242
Query: 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303
GI+LLIF KAS HVPLKILSIEDGTVLKSFNHLL+RNKKVDFIEQFNEKLLVKQENENLQ
Sbjct: 243 GIVLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQ 302
Query: 304 ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 363
ILDVR FELTEVSR+EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH
Sbjct: 303 ILDVRTFELTEVSRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 362
Query: 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
PDCNTNNIYITSDQDLIISYCKADSDD L EGN G + VS ++ C
Sbjct: 363 PDCNTNNIYITSDQDLIISYCKADSDDSLTEGNAGSINVSNILSGKC 409
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388504284|gb|AFK40208.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/407 (89%), Positives = 377/407 (92%), Gaps = 3/407 (0%)
Query: 6 GGGRRISASPRPCSGRRVL--AKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDA 63
G GRRI+ SPRPC GRRV AKK R DGFVNSVKKLQRREISSKRDRAF+MTDA
Sbjct: 3 GTGRRITVSPRPCCGRRVRVDAKKTGRGGRTVDGFVNSVKKLQRREISSKRDRAFSMTDA 62
Query: 64 QERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRE 123
QERFRNIRLQEEYDTHDPKG S+VLPFLRKRSKIIEIVAA+DIVFALAQSGVCAAF RE
Sbjct: 63 QERFRNIRLQEEYDTHDPKGPSSVVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFSRE 122
Query: 124 TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183
TNQRICFLNV+ DEVIRSLFYNKNNDSLITVSVYASD++SSL+CRSTRIEYIRRGKPDAG
Sbjct: 123 TNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAG 182
Query: 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 243
FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP
Sbjct: 183 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 242
Query: 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303
GI+LLIF KAS HVPLKILSIEDGTVLKSFNHLL+RNKKVDFIEQFNEKLLVKQENEN Q
Sbjct: 243 GIVLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENFQ 302
Query: 304 ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 363
ILDVR FELTEVSR+EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH
Sbjct: 303 ILDVRTFELTEVSRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 362
Query: 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
PDCNTNNIYITSDQDLIISYCKADSDD L EGN G + VS ++ C
Sbjct: 363 PDCNTNNIYITSDQDLIISYCKADSDDSLTEGNAGSINVSNILSGKC 409
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 411 | ||||||
| TAIR|locus:2080305 | 467 | AT3G54190 "AT3G54190" [Arabido | 0.965 | 0.850 | 0.853 | 4.7e-183 | |
| TAIR|locus:2064201 | 467 | AT2G38630 "AT2G38630" [Arabido | 0.965 | 0.850 | 0.823 | 1.2e-175 |
| TAIR|locus:2080305 AT3G54190 "AT3G54190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1776 (630.2 bits), Expect = 4.7e-183, P = 4.7e-183
Identities = 343/402 (85%), Positives = 371/402 (92%)
Query: 9 RRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERFR 68
RRI+ASPRPCSGRR++AKKR R DGFVNSVKKLQRREISS++DRAF+++ AQERFR
Sbjct: 4 RRITASPRPCSGRRIVAKKRSRP----DGFVNSVKKLQRREISSRKDRAFSISTAQERFR 59
Query: 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRI 128
N+RL E+YDTHDPKGHC + LPFL KR+K+IEIVAARDIVFALA SGVCAAF RE+N+RI
Sbjct: 60 NMRLVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRI 119
Query: 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE 188
CFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CRSTRIEYI RG+PDAGFALFE
Sbjct: 120 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFE 179
Query: 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 248
SESLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDKNVQEIKISPGIMLL
Sbjct: 180 SESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 239
Query: 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308
IF +A+ HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR
Sbjct: 240 IFKRAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 299
Query: 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNT 368
N EL EVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNT
Sbjct: 300 NAELMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNT 359
Query: 369 NNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
NNIYITSDQDLIISYCKAD++D EGN G + +S ++ C
Sbjct: 360 NNIYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKC 401
|
|
| TAIR|locus:2064201 AT2G38630 "AT2G38630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1706 (605.6 bits), Expect = 1.2e-175, P = 1.2e-175
Identities = 332/403 (82%), Positives = 365/403 (90%)
Query: 9 RRISASPRPCSG-RRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
RRI A+PRPCSG RRV+AKKR R DGFVNSVKKLQRREISS+ DRAF+++ AQERF
Sbjct: 5 RRIIANPRPCSGSRRVIAKKRSRP----DGFVNSVKKLQRREISSRMDRAFSISTAQERF 60
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RN+RL E+YDTHDPKG+C + LP L KRSK+IEIVAARDIVFAL SGVCA+F RETN++
Sbjct: 61 RNMRLVEQYDTHDPKGYCLVSLPNLLKRSKVIEIVAARDIVFALTLSGVCASFSRETNKK 120
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
+CFLNV+ DEVIRSLFYNKNNDSLITVSVYASDN+SSL+CRSTRIEYI RG+ DAGF LF
Sbjct: 121 VCFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKCRSTRIEYILRGQADAGFPLF 180
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNY +LYSISDKNVQEIKISPGIML
Sbjct: 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYALLYSISDKNVQEIKISPGIML 240
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIF +A+ HVPLKILSIEDGT+LKSF+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 241 LIFKRAASHVPLKILSIEDGTLLKSFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRT+FMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCN
Sbjct: 301 RNAELIEVSRTDFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCN 360
Query: 368 TNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
TNNIYITSDQDLIISYCKAD++D EGN G + +S ++ C
Sbjct: 361 TNNIYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKC 403
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 411 405 0.0010 117 3 11 22 0.48 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 618 (66 KB)
Total size of DFA: 253 KB (2136 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.87u 0.11s 37.98t Elapsed: 00:00:02
Total cpu time: 37.87u 0.11s 37.98t Elapsed: 00:00:02
Start: Fri May 10 11:05:34 2013 End: Fri May 10 11:05:36 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_scaffold_125000012 | hypothetical protein (474 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 411 | |||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.81 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.75 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.73 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.71 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.7 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.7 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.7 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.68 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.68 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.67 | |
| PTZ00421 | 493 | coronin; Provisional | 99.66 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.66 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.65 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.64 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.62 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.62 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.57 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.56 | |
| PTZ00420 | 568 | coronin; Provisional | 99.52 | |
| PTZ00420 | 568 | coronin; Provisional | 99.5 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.48 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.47 | |
| PTZ00421 | 493 | coronin; Provisional | 99.44 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.42 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.41 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.37 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.36 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.35 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.34 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.27 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.26 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.25 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.25 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.25 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.23 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.22 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.22 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.21 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.2 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.18 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.18 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.17 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.16 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.15 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.14 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.13 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.13 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.12 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.1 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.09 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.08 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.07 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.03 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.02 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 98.99 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.98 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 98.98 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 98.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.93 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.92 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 98.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 98.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.9 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.89 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.88 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 98.85 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 98.84 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.81 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 98.8 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 98.8 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 98.78 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.78 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.76 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.73 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 98.7 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.7 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.68 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 98.66 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.66 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.65 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.63 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.62 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.6 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.6 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.59 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 98.59 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.58 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.57 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 98.54 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.53 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.53 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.52 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.51 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 98.5 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.5 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.46 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.36 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.36 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.35 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.35 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.35 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 98.32 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.26 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.26 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.25 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 98.21 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.21 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 98.2 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.2 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.2 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.2 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.15 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.15 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.15 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.14 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.13 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.11 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.11 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.1 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.09 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.08 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.07 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.07 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.07 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.07 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.06 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.01 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 98.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.97 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.97 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.96 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 97.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.95 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.91 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 97.89 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 97.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.87 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 97.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.85 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.85 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 97.82 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 97.81 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.8 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.79 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.78 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.77 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.77 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.73 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.72 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.7 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 97.69 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.68 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.68 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 97.67 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 97.65 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 97.6 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.59 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.58 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.55 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.54 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.51 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 97.48 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.47 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.46 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.46 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.42 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 97.41 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.4 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.39 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.37 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.35 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.35 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.35 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.3 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.3 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 97.29 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 97.24 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.24 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.24 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 97.23 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.23 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 97.22 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.19 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.17 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.16 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.15 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 97.14 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.07 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.97 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.92 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 96.9 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.74 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 96.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 96.73 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.72 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.64 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.61 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.59 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 96.53 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 96.53 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 96.45 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 96.43 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 96.41 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.35 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 96.35 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 96.32 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.32 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 96.26 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 96.17 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.15 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 96.12 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.11 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 96.07 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 95.79 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.62 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 95.51 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.51 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 95.5 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 95.49 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 95.43 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.34 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 95.34 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.29 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 95.02 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 94.91 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 94.81 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 94.63 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 94.5 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 94.5 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.43 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 94.15 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 94.12 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.1 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 93.83 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 93.8 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 93.73 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 93.71 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 93.61 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 93.36 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 93.04 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 92.97 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.88 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.75 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 92.42 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 92.23 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 92.23 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 92.03 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.0 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 91.92 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 91.9 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 91.75 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 91.7 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 90.44 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 90.2 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 89.98 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 88.83 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 88.72 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 87.47 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 87.28 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 87.13 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 86.99 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 86.86 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 86.85 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 86.83 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 86.82 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 86.53 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 86.12 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 85.98 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 85.71 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 85.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 84.65 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 83.21 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 83.0 | |
| PRK10115 | 686 | protease 2; Provisional | 82.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 82.16 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 81.7 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 81.64 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 81.06 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 80.01 |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.81 E-value=9e-17 Score=136.45 Aligned_cols=268 Identities=16% Similarity=0.219 Sum_probs=195.8
Q ss_pred cceEEEeecc--ceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 015220 96 SKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (411)
Q Consensus 96 S~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 173 (411)
.+|..+-... +++++-...|....|+..+++.+..+... ...|.++-+...++.+++++. | ..++...+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~---~--~~i~i~~~--- 80 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGTYLASGSS---D--KTIRLWDL--- 80 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCCEEEEEcC---C--CeEEEEEc---
Confidence 4455555443 56777777899999999888876666544 344566666666666666442 2 12222222
Q ss_pred hhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeC-CEEEEEE
Q 015220 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISP-GIMLLIF 250 (411)
Q Consensus 174 ~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISd-G~~Lai~ 250 (411)
..++.-. -|.. .-..+-.+.|+.. ++.++....++.+++||+.+.++++.+..+ .|..+.+++ +.+++..
T Consensus 81 --~~~~~~~---~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 81 --ETGECVR---TLTG-HTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred --CcccceE---EEec-cCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence 1111100 0110 0012233556554 677777778999999999999999998855 599999995 7777766
Q ss_pred ecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc--eeEEeecCceeeEEEcccceEEEeeccccCCCceEEE
Q 015220 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (411)
Q Consensus 251 q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif 328 (411)
.. .-.+++|++.+++.+..+. .|..+|..+...++ .+++...+..+++||+.+++... +...|+..+..
T Consensus 154 ~~---~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~ 224 (289)
T cd00200 154 SQ---DGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG---TLRGHENGVNS 224 (289)
T ss_pred cC---CCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec---chhhcCCceEE
Confidence 52 2358999999999998844 77789999999999 57778889999999999988876 44467777777
Q ss_pred Eeec---eeEEEEe-cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 329 LYEN---QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 329 Ly~s---qlFlSfs-d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+..+ .++++.. +++|.+|++. |.++..+.+|.. .+..+.+++|+..+++++.|. +|++||
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~----------~i~iw~ 289 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-----SVTSLAWSPDGKRLASGSADG----------TIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC-----cEEEEEECCCCCEEEEecCCC----------eEEecC
Confidence 7655 5777776 9999999999 999999998887 799999999999999999987 999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-15 Score=126.56 Aligned_cols=189 Identities=16% Similarity=0.234 Sum_probs=149.2
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
.+.|.. +++.++....++.++|||+.+.+.+.++..+ .+..+..+ ++.+++... ..-.+.+|++.+++....+
T Consensus 56 ~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 56 DVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEe
Confidence 566664 4466777778999999999998888877755 69999999 556666655 2346899999999999884
Q ss_pred eeccccCCcceeeeeeccee-EEeec-CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEe
Q 015220 274 NHLLHRNKKVDFIEQFNEKL-LVKQE-NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekl-lIKQe-~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn 347 (411)
. .|..+|..+..++++. ++-.. +..+.+||+.+++... +...|...+..+..+ +.+++. .++.|.+||
T Consensus 132 ~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 132 R---GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA---TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred c---cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce---eEecCccccceEEECCCcCEEEEecCCCcEEEEE
Confidence 4 7888999999999554 44444 8999999999888776 333566566666544 245445 799999999
Q ss_pred cC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++ +.++..+..|.. .+..+..++|+.++++++.+. +|.+||+.+|+++
T Consensus 206 ~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~----------~i~i~~~~~~~~~ 254 (289)
T cd00200 206 LSTGKCLGTLRGHEN-----GVNSVAFSPDGYLLASGSEDG----------TIRVWDLRTGECV 254 (289)
T ss_pred CCCCceecchhhcCC-----ceEEEEEcCCCcEEEEEcCCC----------cEEEEEcCCceeE
Confidence 99 899999998877 788999999999999998665 9999999998864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-15 Score=159.99 Aligned_cols=261 Identities=14% Similarity=0.216 Sum_probs=184.2
Q ss_pred cccceeeecccccEEEEEeCC----CCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhh-hhCCCCCCCccee
Q 015220 114 SGVCAAFCRETNQRICFLNVT----ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFE 188 (411)
Q Consensus 114 sG~c~af~~~t~~~ic~lN~s----~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i-~~gk~~~~~~LF~ 188 (411)
+|+|...+..+-+....++.+ +...|.++=|+...+-+++.+ .+ ..+ +.-..+.. ..++ +...|..+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg----~D-~~I--~iwd~~~~~~~~~-~~~~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAG----VN-KKI--KIFECESIIKDGR-DIHYPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEe----CC-CEE--EEEECCccccccc-ccccceEE
Confidence 677888776655555555543 677899999998776665543 22 122 22222211 1111 11112221
Q ss_pred ecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEe
Q 015220 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 189 ~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I 264 (411)
-..-.....+-|+..++..|+.+..|++++|||+.+.+.+..+..+ .|..+.++ +|.+|++.... --++||++
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D---g~v~iWd~ 605 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD---GSVKLWSI 605 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC---CEEEEEEC
Confidence 1111112345666667888999999999999999999999888765 79999997 57777776543 34999999
Q ss_pred cCCcEEeEeeeccccCCcceeeeee---cceeEEeecCceeeEEEcccce-EEEeeccccCCCceEEEEee--ceeEEEE
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYE--NQLFLTF 338 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~---~ekllIKQe~~~LkI~dL~t~e-~~~v~~T~f~hpsAfifLy~--sqlFlSf 338 (411)
.+|+.++++. + ...|..+..+ +..+.....++.|++||+++++ ... +..+|...+..+.. .+.++|+
T Consensus 606 ~~~~~~~~~~---~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~---~~~~h~~~V~~v~f~~~~~lvs~ 678 (793)
T PLN00181 606 NQGVSIGTIK---T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC---TMIGHSKTVSYVRFVDSSTLVSS 678 (793)
T ss_pred CCCcEEEEEe---c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce---EecCCCCCEEEEEEeCCCEEEEE
Confidence 9999998854 2 3456666553 3456777889999999999875 344 56678887776654 3667777
Q ss_pred -ecCeEEEEecC-------CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 339 -RNRTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 339 -sd~tI~iWn~~-------Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.|++|++||++ +.++.+|++|.. .++.+..++++.+|+||+.|. +|.|||..++
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-----~i~~v~~s~~~~~lasgs~D~----------~v~iw~~~~~ 740 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFMGHTN-----VKNFVGLSVSDGYIATGSETN----------EVFVYHKAFP 740 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEcCCCC-----CeeEEEEcCCCCEEEEEeCCC----------EEEEEECCCC
Confidence 88999999997 368899999987 788899999999999999997 9999997654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-16 Score=157.62 Aligned_cols=187 Identities=18% Similarity=0.253 Sum_probs=164.8
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEe-cCCcEEeEeee
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSI-EDGTVLKSFNH 275 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I-~tG~~L~t~~~ 275 (411)
-+||+.|++..+++.+++|++.+.+ +++++.++ .|.+++.| ||.+++.... -.=|+||++ ++|..+++
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D~tiriwd~~~~~~~~~~--- 241 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---DKTLRIWDLKDDGRNLKT--- 241 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---CceEEEeeccCCCeEEEE---
Confidence 4689999999999999999999998 88998755 99999999 8887666543 456899999 77799999
Q ss_pred ccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
+-+|...|..+...+.+.+|.+ .++.++|||+.++++.+ ++-+|...+.+++.+ +++++. .|++|+|||..
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE---eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 6699999999999999977766 78999999999999999 888999999999988 778888 69999999999
Q ss_pred -Cc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 -GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 -Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|. ++..+.+|.. +- -+..+..+|||+.|++++.|. ++++||+.+|+|.
T Consensus 319 ~~~~~~~~~~~~~~~--~~-~~~~~~fsp~~~~ll~~~~d~----------~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 319 TGSKLCLKLLSGAEN--SA-PVTSVQFSPNGKYLLSASLDR----------TLKLWDLRSGKSV 369 (456)
T ss_pred CCceeeeecccCCCC--CC-ceeEEEECCCCcEEEEecCCC----------eEEEEEccCCcce
Confidence 66 4678888888 11 378999999999999999998 9999999999875
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-14 Score=127.87 Aligned_cols=267 Identities=11% Similarity=0.134 Sum_probs=171.8
Q ss_pred eehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc
Q 015220 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (411)
Q Consensus 107 ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L 186 (411)
+++.-...|...+||..|++.+..++... -++++-++.....++++ .. .++ . .+..+. ..|+. ...
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~~dg~~l~~~-~~-~~~--~--v~~~d~---~~~~~---~~~ 68 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLSKDGKLLYVC-AS-DSD--T--IQVIDL---ATGEV---IGT 68 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCC--CCCceEECCCCCEEEEE-EC-CCC--e--EEEEEC---CCCcE---EEe
Confidence 44445667889999999999888887532 35777777766554332 21 121 1 222221 11111 000
Q ss_pred eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEe
Q 015220 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 187 F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I 264 (411)
+.. -..|..+-|+....++++.+.+++.+++||+++.+.+..+. +..+..+.++ ||.++++.....+. +.+|+.
T Consensus 69 ~~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~--~~~~d~ 144 (300)
T TIGR03866 69 LPS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNM--AHFIDT 144 (300)
T ss_pred ccC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCe--EEEEeC
Confidence 111 12255667765444566677789999999999999988887 3468889999 89888887665432 556899
Q ss_pred cCCcEEeEeeeccccCCcceeeeeeccee-EEee--cCceeeEEEcccceEEE-eeccc------cCCCceEEEEe-ece
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQ--ENENLQILDVRNFELTE-VSRTE------FMTPSAFIFLY-ENQ 333 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQ--e~~~LkI~dL~t~e~~~-v~~T~------f~hpsAfifLy-~sq 333 (411)
.+++.+... ... ..+..+..++++. ++.. .+..+.+||+.+++... +.-.. -..|..+.+-. .+.
T Consensus 145 ~~~~~~~~~---~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 145 KTYEIVDNV---LVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred CCCeEEEEE---EcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE
Confidence 999888762 222 3446678887765 3233 47889999999987654 11000 01222222222 224
Q ss_pred eEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 334 LFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|++. .++++.+||.+ |+++..+..+ ..+..+..+|||+.|++++..+ |+|.+||+.+|+++
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~---------~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDYLLVG------QRVWQLAFTPDEKYLLTTNGVS---------NDVSVIDVAALKVI 284 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEeC------CCcceEEECCCCCEEEEEcCCC---------CeEEEEECCCCcEE
Confidence 57766 67799999999 8877665321 1356889999999998876432 59999999999985
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-17 Score=166.01 Aligned_cols=187 Identities=14% Similarity=0.245 Sum_probs=153.8
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
-+.||| .+++++.-|+|+||||-++++++|.|+++ -|.=.-..+. ++..+ .+-+-+.|||.+||+++++
T Consensus 202 ClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viisG---SSDsTvrvWDv~tge~l~t-- 272 (499)
T KOG0281|consen 202 CLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVSG---SSDSTVRVWDVNTGEPLNT-- 272 (499)
T ss_pred EEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEec---CCCceEEEEeccCCchhhH--
Confidence 355665 56788999999999999999999999998 4444333344 23222 3456789999999999999
Q ss_pred eccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-Cc
Q 015220 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Ge 351 (411)
++||-.-|=-+...++++.--+.++.|.+||+.+-.-+-.-+-+-+|..|+--+... ++-+|- +|+||++|+.. ||
T Consensus 273 -lihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 273 -LIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred -HhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecccee
Confidence 999999998888888888889999999999998855443445677899999999888 555666 89999999999 99
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-++++++|+- -..-.-=.|.+++|||.|. ||.+|||+.|+|+
T Consensus 352 fvRtl~gHkR-------GIAClQYr~rlvVSGSSDn----------tIRlwdi~~G~cL 393 (499)
T KOG0281|consen 352 FVRTLNGHKR-------GIACLQYRDRLVVSGSSDN----------TIRLWDIECGACL 393 (499)
T ss_pred eehhhhcccc-------cceehhccCeEEEecCCCc----------eEEEEeccccHHH
Confidence 9999999987 2344456799999999999 9999999999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=158.95 Aligned_cols=194 Identities=17% Similarity=0.178 Sum_probs=162.6
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
+-|-. +|+.|++++.|.|.|+||+.|-+++++.+.| =|+.|..| ||-.||...... .|.+||-++|+.+..
T Consensus 121 ~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg---~I~lwdpktg~~~g~-- 194 (480)
T KOG0271|consen 121 VQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG---SIRLWDPKTGQQIGR-- 194 (480)
T ss_pred EEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC---eEEEecCCCCCcccc--
Confidence 56766 9999999999999999999999999999977 79999999 999988876654 478999999999886
Q ss_pred eccccCCcceeeeeec-----ceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEE
Q 015220 275 HLLHRNKKVDFIEQFN-----EKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVA 344 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~-----ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~ 344 (411)
-|-||+|.|-.|.-.+ +.-++++ +++.++|||+.-|.... ++-+|..++.|+--- .+..|+ .|+||+
T Consensus 195 ~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~---~lsgHT~~VTCvrwGG~gliySgS~DrtIk 271 (480)
T KOG0271|consen 195 ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR---TLSGHTASVTCVRWGGEGLIYSGSQDRTIK 271 (480)
T ss_pred cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE---EeccCccceEEEEEcCCceEEecCCCceEE
Confidence 2679999999887554 3345555 68999999999999888 899999999998744 666677 788888
Q ss_pred EEecC-Cceeeeecccccc--CCCC-------------------------------------------------------
Q 015220 345 VWNFR-GELVTSFEDHLLW--HPDC------------------------------------------------------- 366 (411)
Q Consensus 345 iWn~~-Gel~~s~e~H~~~--~~~c------------------------------------------------------- 366 (411)
+|+-. |-+++.|.||--| |..|
T Consensus 272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 88776 7777777777655 3333
Q ss_pred -----------------ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 367 -----------------NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 367 -----------------~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+|.|++|||+..|.|+|=|+ +|++||-.|||-+
T Consensus 352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk----------SVkLW~g~tGk~l 402 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK----------SVKLWDGRTGKFL 402 (480)
T ss_pred cccccccchhhhhchhhheeeEEECCCccEEEEeeccc----------ceeeeeCCCcchh
Confidence 368899999999999999999 9999999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=155.16 Aligned_cols=260 Identities=15% Similarity=0.117 Sum_probs=210.2
Q ss_pred ccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeec-CCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCC
Q 015220 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (411)
Q Consensus 104 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~-~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~ 182 (411)
..++|+--.-+|+|.+++..+.+.+|.|-.-..+|.--.||-. .+.++++.|.- + +.+--.++.|
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D---g--tvklw~~~~e--------- 251 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD---G--TVKLWKLSQE--------- 251 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC---C--ceeeeccCCC---------
Confidence 3577888889999999999999999999999999998899988 57788886542 2 2222222221
Q ss_pred CCcceee-cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCcee
Q 015220 183 GFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 183 ~~~LF~~-~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ip 258 (411)
.||=+= .-+..=+=|-| -|+|+-|...+-|++-|+||+.+.+++....+| .|..|..- ||-+++++-- -..
T Consensus 252 -~~l~~l~gH~~RVs~Vaf-HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---D~~ 326 (459)
T KOG0272|consen 252 -TPLQDLEGHLARVSRVAF-HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---DSL 326 (459)
T ss_pred -cchhhhhcchhhheeeee-cCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc---cch
Confidence 222110 11122233445 479999999999999999999999988777766 89999888 9998776543 356
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec----
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---- 332 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---- 332 (411)
-.||||-||..++. |-||.|||.-++-+|.+..++. +++..|||||+.+...- |.=.|...+.=|-++
T Consensus 327 ~RvWDlRtgr~im~---L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMF---LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred hheeecccCcEEEE---ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCC
Confidence 78999999999999 7899999999999999998886 67899999999977755 777788888776655
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
..++|. -|+|+.+|+.+ +.++.+|-||.. .+=++.||+|++.|+|++.|+ |||+|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~-----kV~s~Dis~d~~~i~t~s~DR----------T~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTWSPLKSLAGHEG-----KVISLDISPDSQAIATSSFDR----------TIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCcccchhhcCCcc-----ceEEEEeccCCceEEEeccCc----------eeeecc
Confidence 456666 89999999999 999999999999 999999999999999999999 999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=159.50 Aligned_cols=228 Identities=17% Similarity=0.189 Sum_probs=175.6
Q ss_pred EEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecc-cCCCCeEEeeCCCCeEEEeecCCCeEE
Q 015220 140 RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES-LKWPGFVEFDDVNGKVLTYSAQDSIYK 218 (411)
Q Consensus 140 rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~-l~~PgfvEFDd~NGkiLt~~~~ds~yk 218 (411)
++++-=.+.|..|+ |+|+=+++.+=+-.. +|..-. -.|-|-|=-=+.+.|++++++.|+|++
T Consensus 198 kgVYClQYDD~kiV---------SGlrDnTikiWD~n~--------~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvr 260 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIV---------SGLRDNTIKIWDKNS--------LECLKILTGHTGSVLCLQYDERVIVSGSSDSTVR 260 (499)
T ss_pred CceEEEEecchhhh---------cccccCceEEecccc--------HHHHHhhhcCCCcEEeeeccceEEEecCCCceEE
Confidence 34444445556665 566666665433221 222211 246677755555667999999999999
Q ss_pred EEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe
Q 015220 219 VFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (411)
Q Consensus 219 VWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK 296 (411)
|||.+|.++|-++-++ +|.-+++++|+|+--+ +. =.+.||++-.-..+.----|.||..-|+.+.-..-++.-+
T Consensus 261 vWDv~tge~l~tlihHceaVLhlrf~ng~mvtcS---kD-rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsA 336 (499)
T KOG0281|consen 261 VWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCS---KD-RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSA 336 (499)
T ss_pred EEeccCCchhhHHhhhcceeEEEEEeCCEEEEec---CC-ceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEe
Confidence 9999999999999877 9999999999986432 22 2589999875442221113789999999776666666778
Q ss_pred ecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEE
Q 015220 297 QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 373 (411)
Q Consensus 297 Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~I 373 (411)
+++-.||.||.-|+|.++ |+-+|....-||-++ .+-+|+ +|+|||+|+.. |.+++-||||.- -+..|
T Consensus 337 SgDRTikvW~~st~efvR---tl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-----LvRci-- 406 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVR---TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-----LVRCI-- 406 (499)
T ss_pred cCCceEEEEeccceeeeh---hhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH-----hhhhe--
Confidence 999999999999999998 999999999999888 677788 99999999999 999999999987 45554
Q ss_pred cCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 374 TSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 374 s~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
-=|.+-|+||--|- +|+|||+-+|.
T Consensus 407 RFd~krIVSGaYDG----------kikvWdl~aal 431 (499)
T KOG0281|consen 407 RFDNKRIVSGAYDG----------KIKVWDLQAAL 431 (499)
T ss_pred eecCceeeeccccc----------eEEEEeccccc
Confidence 44788999998885 99999999874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-15 Score=146.11 Aligned_cols=184 Identities=16% Similarity=0.189 Sum_probs=152.4
Q ss_pred CCeEEEeecCCCeEEEEEeeC-----ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 204 NGKVLTYSAQDSIYKVFDLKN-----YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~-----Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
|-.+|.+..-|+++-+|+|.. ...+..+++| .|+++.+| ||+|.+...-- =-+.+||+++|+....
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD---~~lrlWDl~~g~~t~~--- 100 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD---GTLRLWDLATGESTRR--- 100 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc---ceEEEEEecCCcEEEE---
Confidence 345677777799999999965 3467888875 99999999 99987665443 3589999999988887
Q ss_pred ccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEEEE-ecCeEEEEe
Q 015220 276 LLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFlSf-sd~tI~iWn 347 (411)
+-||.+.|=.++++.+.--| -+.+..|++||....-.+.+ +..++..|+.+|-.+ -++++. .|+|+++||
T Consensus 101 f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~--~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWn 178 (315)
T KOG0279|consen 101 FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTI--HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWN 178 (315)
T ss_pred EEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEE--ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEc
Confidence 66999999999999987644 45789999999999988876 666678999998855 457777 899999999
Q ss_pred cC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++ =++.++|-||.. ++|++.+||||-+++||.||- .+-+||+..||++
T Consensus 179 l~~~~l~~~~~gh~~-----~v~t~~vSpDGslcasGgkdg----------~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 179 LRNCQLRTTFIGHSG-----YVNTVTVSPDGSLCASGGKDG----------EAMLWDLNEGKNL 227 (315)
T ss_pred cCCcchhhccccccc-----cEEEEEECCCCCEEecCCCCc----------eEEEEEccCCcee
Confidence 99 568889999999 999999999999999999985 6666666666654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=149.40 Aligned_cols=208 Identities=15% Similarity=0.224 Sum_probs=152.6
Q ss_pred hCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCc-------eEEEEeccC--ceeEEEEeC-
Q 015220 177 RGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-------TMLYSISDK--NVQEIKISP- 243 (411)
Q Consensus 177 ~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y-------s~iysLs~~--~VqeIkISd- 243 (411)
.|++....|++.. |-| -+.|+..|+..|++++.|++++|||+.+. +++..+.++ .|..+..++
T Consensus 61 ~G~~~~~~~~l~G----H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 61 YGKLASNPPILLG----QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred cccCCCCCceEeC----CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC
Confidence 4555555556542 333 46788778889999999999999999864 367778765 799999994
Q ss_pred -CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeecccc
Q 015220 244 -GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEF 320 (411)
Q Consensus 244 -G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f 320 (411)
+.+|+.... ---|+|||+++|+.+.+ +-+|...|..+..++++-++ ...+..|+|||+++++... +..
T Consensus 137 ~~~iLaSgs~---DgtVrIWDl~tg~~~~~---l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~ 207 (493)
T PTZ00421 137 AMNVLASAGA---DMVVNVWDVERGKAVEV---IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVE 207 (493)
T ss_pred CCCEEEEEeC---CCEEEEEECCCCeEEEE---EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEe
Confidence 356666543 23489999999999888 55788999999998877544 4577899999999998776 566
Q ss_pred CCCce----EEEEeeceeEEEE-----ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCC
Q 015220 321 MTPSA----FIFLYENQLFLTF-----RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSD 389 (411)
Q Consensus 321 ~hpsA----fifLy~sqlFlSf-----sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~ 389 (411)
+|..+ .++......+++. +|++|++||++ ..++.+.+.|.. +.+...+.++|+.+++++++.+
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~----~~~~~~~~d~d~~~L~lggkgD-- 281 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS----SALFIPFFDEDTNLLYIGSKGE-- 281 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC----CceEEEEEcCCCCEEEEEEeCC--
Confidence 66543 3333333445543 37899999998 446665553332 4566678899999999998733
Q ss_pred CccccCCceEEEeeecceeee
Q 015220 390 DPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 390 ~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+|++||+.+|+++
T Consensus 282 -------g~Iriwdl~~~~~~ 295 (493)
T PTZ00421 282 -------GNIRCFELMNERLT 295 (493)
T ss_pred -------CeEEEEEeeCCceE
Confidence 49999999999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=147.98 Aligned_cols=188 Identities=16% Similarity=0.234 Sum_probs=153.3
Q ss_pred CCCCeEEEeecCCCeEEEEEe-eCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDL-KNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL-~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
-++|+.++..+.|.++||||+ .++.++++|.++ .|..+.++ +|.+++...--+ -++||++.+|+++.. |-
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~---tvriWd~~~~~~~~~---l~ 285 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDG---TVRIWDVRTGECVRK---LK 285 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCC---cEEEEeccCCeEEEe---ee
Confidence 367889999999999999999 778999999988 88888888 888777766554 489999999999999 77
Q ss_pred ccCCcceeeeeecceeEEee--cCceeeEEEcccceEE---EeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEec
Q 015220 278 HRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELT---EVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNF 348 (411)
Q Consensus 278 ~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~---~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~ 348 (411)
+|+.+|-.+...++..+|.. .+..|+|||+.+++.. ++.....-. .+.++..+ ..+++. -|+++++||+
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~fsp~~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA--PVTSVQFSPNGKYLLSASLDRTLKLWDL 363 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC--ceeEEEECCCCcEEEEecCCCeEEEEEc
Confidence 99999999999999885554 5789999999999953 343343311 24454443 556666 7779999999
Q ss_pred C-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 349 ~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+ |..+.++.+|..- ..|-...+. +++|.+|+||+.|. +|.+||+.||..
T Consensus 364 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~sg~~d~----------~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 364 RSGKSVGTYTGHSNL-VRCIFSPTL-STGGKLIYSGSEDG----------SVYVWDSSSGGI 413 (456)
T ss_pred cCCcceeeecccCCc-ceeEecccc-cCCCCeEEEEeCCc----------eEEEEeCCccch
Confidence 9 9999999999985 245444444 99999999999998 999999999764
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=151.48 Aligned_cols=260 Identities=16% Similarity=0.162 Sum_probs=197.4
Q ss_pred cceehhhhccccceeeecccccEEEE-EeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICF-LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~-lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 183 (411)
.+.++.-+....=..||..+++.+-. +. ++..-|.++.|....+-||+.|.= +++.+-+..-|+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~-GH~g~V~~l~~~~~~~~lvsgS~D----------~t~rvWd~~sg~---- 282 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLV-GHFGGVWGLAFPSGGDKLVSGSTD----------KTERVWDCSTGE---- 282 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeecc-CCCCCceeEEEecCCCEEEEEecC----------CcEEeEecCCCc----
Confidence 34555555556657888887775544 43 666778999999888888887732 122222222222
Q ss_pred Ccceeeccc-CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeE
Q 015220 184 FALFESESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLK 260 (411)
Q Consensus 184 ~~LF~~~~l-~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiK 260 (411)
++-++ .|++-|-=.+..+..++++.-|.++|||+.++.+.+..+.++ .|.+|.+..+.++...+-- .||
T Consensus 283 ----C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~----~v~ 354 (537)
T KOG0274|consen 283 ----CTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDG----TVK 354 (537)
T ss_pred ----EEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCc----eEE
Confidence 12222 366666666666667777889999999999999999999944 8999999866654443322 899
Q ss_pred EEEecCCcEEeEeeeccccCCcceeeeeec-ceeEEeecCceeeEEEcccc-eEEEeeccccCCCceEEEEeec-eeEEE
Q 015220 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYEN-QLFLT 337 (411)
Q Consensus 261 Il~I~tG~~L~t~~~LL~h~K~I~FLE~~~-ekllIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~s-qlFlS 337 (411)
||++.+|+++++ |-||.-.|+-+..-+ +.++=-+-+..||+||+.+. +++. |+.+|++-+.-+.-. +.+++
T Consensus 355 VW~~~~~~cl~s---l~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~---tl~~h~~~v~~l~~~~~~Lvs 428 (537)
T KOG0274|consen 355 VWDPRTGKCLKS---LSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIH---TLQGHTSLVSSLLLRDNFLVS 428 (537)
T ss_pred EEEhhhceeeee---ecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhh---hhcCCcccccccccccceeEe
Confidence 999999999999 889999999998877 66677778899999999999 8887 999999888665554 67777
Q ss_pred E-ecCeEEEEecC-Cceeeeecc-ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 338 F-RNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 338 f-sd~tI~iWn~~-Gel~~s~e~-H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
. .|++|++||.. |+.++++++ |.. .+-.+... .+.+++++.+. ++++||+.+|++.
T Consensus 429 ~~aD~~Ik~WD~~~~~~~~~~~~~~~~-----~v~~l~~~--~~~il~s~~~~----------~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGECLRTLEGRHVG-----GVSALALG--KEEILCSSDDG----------SVKLWDLRSGTLI 487 (537)
T ss_pred ccccccEEEeecccCceeeeeccCCcc-----cEEEeecC--cceEEEEecCC----------eeEEEecccCchh
Confidence 7 99999999999 999999999 555 55555544 68888888886 9999999999975
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=149.70 Aligned_cols=185 Identities=17% Similarity=0.271 Sum_probs=153.0
Q ss_pred CeEEEeecCCCeEEEEEeeC-ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 205 GKVLTYSAQDSIYKVFDLKN-YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
||.|+.+++|=..+.||+.+ |+++.++.++ .|+.+.+= -|-.++.-...+.. |.|+++||-.+++ +-+|+
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti---k~We~~tg~cv~t---~~~h~ 235 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI---KAWECDTGYCVKT---FPGHS 235 (406)
T ss_pred ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce---eEEecccceeEEe---ccCch
Confidence 49999999998899999999 8899988855 89999988 56555555554443 9999999999999 67999
Q ss_pred CcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEe-----------ec-----eeEEEE-ecC
Q 015220 281 KKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-----------EN-----QLFLTF-RNR 341 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-----------~s-----qlFlSf-sd~ 341 (411)
.=|..+.+..|+.++++ .+..|.+|=+.+++...+- +.-.||-..+..+ .. |.+.++ +|+
T Consensus 236 ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 236 EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 99999999999999998 5568999999998443321 1122443333322 11 688888 999
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeeeC
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCKI 411 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~~ 411 (411)
||++||.. |..+-||-+|..| +..++|+|-|++|+|...|+ |+++||+.++.|.+
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnw-----Vr~~af~p~Gkyi~ScaDDk----------tlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNW-----VRGVAFSPGGKYILSCADDK----------TLRVWDLKNLQCMK 370 (406)
T ss_pred eEEEEeccCCeEEEEEecccce-----eeeeEEcCCCeEEEEEecCC----------cEEEEEeccceeee
Confidence 99999999 9999999999996 88999999999999999998 99999999999964
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=151.08 Aligned_cols=185 Identities=15% Similarity=0.212 Sum_probs=154.2
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
++|+. -+..|+++.-|.+.||||+.++++..+|-.+ -|+.+.+-+-..+- ..----+|||++++|+.+++
T Consensus 255 l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~s----gs~D~tVkVW~v~n~~~l~l--- 326 (537)
T KOG0274|consen 255 LAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVS----GSRDNTVKVWDVTNGACLNL--- 326 (537)
T ss_pred EEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEee----ccCCceEEEEeccCcceEEE---
Confidence 46666 5778888999999999999999999999966 56666665555332 11112489999999999998
Q ss_pred ccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecC-C-
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFR-G- 350 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~-G- 350 (411)
+=+|.-+|..+....+.++--+.+..+++||..+++... ++-+|.-++..|+.. +..+++ -|++|++||++ +
T Consensus 327 ~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~---sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 327 LRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLK---SLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred eccccccEEEEEecCCEEEEEecCceEEEEEhhhceeee---eecCCcceEEEEEecCcceEEeeeeccceEeecCCchh
Confidence 334999999999998888888888899999999999998 999999999997654 578888 89999999999 6
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..+-+|.+|.. .++ -+...+.+|+|+++|. +|++||+++|+|+
T Consensus 404 ~c~~tl~~h~~-----~v~--~l~~~~~~Lvs~~aD~----------~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 404 KCIHTLQGHTS-----LVS--SLLLRDNFLVSSSADG----------TIKLWDAEEGECL 446 (537)
T ss_pred hhhhhhcCCcc-----ccc--ccccccceeEeccccc----------cEEEeecccCcee
Confidence 68889999999 442 2456789999999997 9999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=152.45 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=172.0
Q ss_pred CCeEEeeCC-CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 195 PGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 195 PgfvEFDd~-NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
-|=++|-++ +++.+++++.|++.|+|++.+-++|..|++| +|..|+.- +|.||++..--+ .-.|||++|++.+
T Consensus 220 v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~---tWRlWD~~tk~El 296 (459)
T KOG0272|consen 220 VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS---TWRLWDLETKSEL 296 (459)
T ss_pred eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc---chhhcccccchhh
Confidence 455677777 7999999999999999999999999999988 89999999 999999876554 4689999999998
Q ss_pred eEeeeccccCCcceeeeeecceeEEeecCc--eeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVA 344 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQe~~--~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~ 344 (411)
.- .=||+|+|.-+.-..|+=|+..+|. -=+|||++||..+- .+-+|...++.++.+ ..++|+ +|+|++
T Consensus 297 L~---QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im---~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 297 LL---QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM---FLAGHIKEILSVAFSPNGYHLATGSSDNTCK 370 (459)
T ss_pred Hh---hcccccccceeEecCCCceeeccCccchhheeecccCcEEE---EecccccceeeEeECCCceEEeecCCCCcEE
Confidence 86 6699999999999999999999865 56899999999998 788899999999988 778899 999999
Q ss_pred EEecCC-ceeeeeccccccCCCCccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 345 VWNFRG-ELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 345 iWn~~G-el~~s~e~H~~~~~~c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|||+++ ..+-+.-.|.. .+..|--+| -|.+|++++-|. |+|||.-.++.|+
T Consensus 371 VWDLR~r~~ly~ipAH~n-----lVS~Vk~~p~~g~fL~TasyD~----------t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 371 VWDLRMRSELYTIPAHSN-----LVSQVKYSPQEGYFLVTASYDN----------TVKIWSTRTWSPL 423 (459)
T ss_pred Eeeecccccceecccccc-----hhhheEecccCCeEEEEcccCc----------ceeeecCCCcccc
Confidence 999994 46779999999 888888887 899999999998 9999999988764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-12 Score=137.87 Aligned_cols=189 Identities=11% Similarity=0.143 Sum_probs=144.5
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCc-EEeEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGT-VLKSF 273 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~-~L~t~ 273 (411)
+.|...+|..|++++.|++++|||+++.+.+.++..+ .|..+..+ +|.+|++....+ .|++|++.+++ .+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg---~I~iwD~~~~~~~~~~- 656 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADH---KVYYYDLRNPKLPLCT- 656 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEECCCCCccceE-
Confidence 5788889999999999999999999999999888755 78888875 688888876554 68999999886 4555
Q ss_pred eeccccCCcceeeeeecce-eEEeecCceeeEEEcccc------eEEEeeccccCCCceEEEEeec---eeEEEE-ecCe
Q 015220 274 NHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNF------ELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRT 342 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ek-llIKQe~~~LkI~dL~t~------e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~t 342 (411)
+.+|++.|..+...++. ++..+.+..|+|||+.++ +... +..+|.....++..+ ++++++ .|++
T Consensus 657 --~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~---~~~gh~~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 657 --MIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLH---SFMGHTNVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred --ecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceE---EEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence 56899999888776544 456678899999999864 3333 555677665555544 788888 7999
Q ss_pred EEEEecC-Cceeeeecc--c------cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 343 VAVWNFR-GELVTSFED--H------LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 343 I~iWn~~-Gel~~s~e~--H------~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|.+|+.. +.++.++.- . ...+....++.+..++||..+++|+.|. +|+|||+.
T Consensus 732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG----------~I~i~~~~ 793 (793)
T PLN00181 732 VFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG----------NIKILEMV 793 (793)
T ss_pred EEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC----------cEEEEecC
Confidence 9999987 555443321 1 1111234689999999999999999886 99999973
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=143.95 Aligned_cols=186 Identities=15% Similarity=0.219 Sum_probs=148.2
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC-CcEEeEeeeccccCC
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNK 281 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t-G~~L~t~~~LL~h~K 281 (411)
-+.+....|.++||||+.||++..+|.++ -|++|.++ -|-.|+.-. .-+++|+|+.++ -+.+++ ++||.-
T Consensus 121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcS---sDl~~~LWd~~~~~~c~ks---~~gh~h 194 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCS---SDLSAKLWDFDTFFRCIKS---LIGHEH 194 (406)
T ss_pred eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecC---CccchhheeHHHHHHHHHH---hcCccc
Confidence 35666668999999999999999999877 79999999 776655533 345599999998 667777 788877
Q ss_pred cceeeee--ecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceee
Q 015220 282 KVDFIEQ--FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVT 354 (411)
Q Consensus 282 ~I~FLE~--~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~ 354 (411)
-|+.+.+ .+++++=.+.++.||+|++.+|.... |.-+||+|+--+..+ .|+.|. -|.++++|-+. ++-+.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~---t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK---TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEE---eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence 7775544 46777888899999999999999999 999999999999988 678888 77899999999 87677
Q ss_pred eeccccc------cCCCCccceEE-EcC---CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 SFEDHLL------WHPDCNTNNIY-ITS---DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 s~e~H~~------~~~~c~~n~i~-Is~---Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|.+|.- |+|+-.--+|. -++ .|+++.|+|-|+ ||||||+.||+|+
T Consensus 272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk----------tIk~wdv~tg~cL 327 (406)
T KOG0295|consen 272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK----------TIKIWDVSTGMCL 327 (406)
T ss_pred hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc----------eEEEEeccCCeEE
Confidence 7788864 44443321111 011 347999999999 9999999999997
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=137.31 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=137.1
Q ss_pred ecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeC--CEEEEEEecCCCceeeEEEEecCCcE-Ee----EeeeccccCC
Q 015220 211 SAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTV-LK----SFNHLLHRNK 281 (411)
Q Consensus 211 ~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISd--G~~Lai~q~t~~~ipiKIl~I~tG~~-L~----t~~~LL~h~K 281 (411)
++..+.+++|++..-.++..+.++ .|..+..+| +.+||....-. -|+||++.++.. .. ....+-+|+.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dg---tIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDL---TIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCCccccccccceEEeecCCC
Confidence 445789999999888889999876 899999994 67787775433 579999997632 11 1223668999
Q ss_pred cceeeeeeccee-EE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Ccee
Q 015220 282 KVDFIEQFNEKL-LV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELV 353 (411)
Q Consensus 282 ~I~FLE~~~ekl-lI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~ 353 (411)
+|..++.+++.. ++ .+.++.|+|||+.+++... +. .|+..+..+..+ .++++. .|++|+|||++ |+++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF---QI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE---EE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 999999998653 33 4678999999999998654 22 356667777655 677766 69999999999 9999
Q ss_pred eeeccccccCCCCccceEE---EcCCCCEEEEEecCCCCCccccCCceEEEeeecc-eee
Q 015220 354 TSFEDHLLWHPDCNTNNIY---ITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF-VTC 409 (411)
Q Consensus 354 ~s~e~H~~~~~~c~~n~i~---Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t-Gk~ 409 (411)
.++.+|.+- .....++ +++|++.|+|++.|+ ...++|+|||+.+ +++
T Consensus 203 ~tl~gH~g~---~~s~~v~~~~fs~d~~~IlTtG~d~------~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 203 SSFHIHDGG---KNTKNIWIDGLGGDDNYILSTGFSK------NNMREMKLWDLKNTTSA 253 (568)
T ss_pred EEEecccCC---ceeEEEEeeeEcCCCCEEEEEEcCC------CCccEEEEEECCCCCCc
Confidence 999999872 1112222 368999999999886 2335899999984 554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-12 Score=135.43 Aligned_cols=190 Identities=11% Similarity=0.101 Sum_probs=135.2
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCc--------eEEEEeccC--ceeEEEEe-CCEEE-EEEecCCCceeeEEEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY--------TMLYSISDK--NVQEIKIS-PGIML-LIFTKASGHVPLKILSI 264 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y--------s~iysLs~~--~VqeIkIS-dG~~L-ai~q~t~~~ipiKIl~I 264 (411)
-+.|..-++..|++++.|++++|||+.+. +++..+.++ .|..+..+ ++..+ +.... . --|+|||+
T Consensus 79 ~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~-D--gtIrIWDl 155 (568)
T PTZ00420 79 DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF-D--SFVNIWDI 155 (568)
T ss_pred EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC-C--CeEEEEEC
Confidence 35676667889999999999999999863 244556654 79999999 45544 44332 2 35899999
Q ss_pred cCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceE----EEE----eecee
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAF----IFL----YENQL 334 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAf----ifL----y~sql 334 (411)
.+|+.+.++ .+..+|..+..++++-++. ..+..|+|||+++++... +.-+|.... +++ ...+.
T Consensus 156 ~tg~~~~~i----~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~ 228 (568)
T PTZ00420 156 ENEKRAFQI----NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNY 228 (568)
T ss_pred CCCcEEEEE----ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCE
Confidence 999988773 3457899999988776555 357899999999998876 555665432 222 23355
Q ss_pred EEE-Eec----CeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 335 FLT-FRN----RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 335 FlS-fsd----~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
++| +.| ++|+|||++ ++++.++..+..-. .....|=+++|.++++|+-|. +|.+|++.+|
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~---~L~p~~D~~tg~l~lsGkGD~----------tIr~~e~~~~ 295 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA---PLIPHYDESTGLIYLIGKGDG----------NCRYYQHSLG 295 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc---ceEEeeeCCCCCEEEEEECCC----------eEEEEEccCC
Confidence 665 444 489999999 67777664433210 222334467799999999987 9999999888
Q ss_pred ee
Q 015220 408 TC 409 (411)
Q Consensus 408 k~ 409 (411)
.+
T Consensus 296 ~~ 297 (568)
T PTZ00420 296 SI 297 (568)
T ss_pred cE
Confidence 64
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-13 Score=134.89 Aligned_cols=194 Identities=15% Similarity=0.210 Sum_probs=166.9
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCC
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG 267 (411)
.-|.|=--|.+|..| .-++.++.|.++|||||.+.++..+|+++ .|-++++|+-+=.+++-..... +|-|||++-
T Consensus 149 gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~--VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ--VKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe--eEEEechhh
Confidence 455666677899985 56777889999999999999999999977 9999999988877777766665 699999999
Q ss_pred cEEeEeeeccccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecC
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNR 341 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~ 341 (411)
++++. --||-.-|+.|.++ .+-|+-...+..+++||++++...- ++-+|...+--|.-+ ---+|+ .|.
T Consensus 226 kvIR~---YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~---~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 226 KVIRH---YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH---VLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred hhHHH---hccccceeEEEeccccceeEEecCCcceEEEeeecccceEE---EecCCCCcceeEEeecCCCceEEecCCc
Confidence 99998 78999999999999 6667777889999999999999998 788888887776655 334566 999
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
||++||++ |.-..++.-|.- .+..+.+-|+.-+..|+|+|. |+=|++--|+
T Consensus 300 tvrlWDl~agkt~~tlt~hkk-----svral~lhP~e~~fASas~dn-----------ik~w~~p~g~ 351 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKK-----SVRALCLHPKENLFASASPDN-----------IKQWKLPEGE 351 (460)
T ss_pred eEEEeeeccCceeEeeecccc-----eeeEEecCCchhhhhccCCcc-----------ceeccCCccc
Confidence 99999999 999999999999 899999999999999999995 6667665554
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-13 Score=134.39 Aligned_cols=183 Identities=17% Similarity=0.231 Sum_probs=153.4
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+..+-|++++-|++.+|||.+-.++++.|++| -|.-|+-. +|.| +...+. =-||+|...+|++.++ |-||
T Consensus 215 p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli---ySgS~D-rtIkvw~a~dG~~~r~---lkGH 287 (480)
T KOG0271|consen 215 PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI---YSGSQD-RTIKVWRALDGKLCRE---LKGH 287 (480)
T ss_pred CCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE---EecCCC-ceEEEEEccchhHHHh---hccc
Confidence 45678999999999999999999999999999 67777776 5653 233332 2589999999999999 7788
Q ss_pred CCcceeeeeec--------------------------------------ceeEEeecCceeeEEEcccce-EEEeecccc
Q 015220 280 NKKVDFIEQFN--------------------------------------EKLLVKQENENLQILDVRNFE-LTEVSRTEF 320 (411)
Q Consensus 280 ~K~I~FLE~~~--------------------------------------ekllIKQe~~~LkI~dL~t~e-~~~v~~T~f 320 (411)
..-|+-|+.+- |-+.=.+.+..+-+||=...+ ++. -..
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~---rmt 364 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT---RMT 364 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh---hhh
Confidence 88888888872 335666778888999866544 554 456
Q ss_pred CCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccC
Q 015220 321 MTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (411)
Q Consensus 321 ~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~ 395 (411)
+|...+.-++.| .+-+|. =|++|++|+-+ |.-+++|-||.. .+..|+-|.|-.||+|||||.
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-----~VYqvawsaDsRLlVS~SkDs-------- 431 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-----AVYQVAWSADSRLLVSGSKDS-------- 431 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-----eeEEEEeccCccEEEEcCCCc--------
Confidence 799999999999 556666 69999999999 999999999999 999999999999999999999
Q ss_pred CceEEEeeecceeee
Q 015220 396 NGKLFVSLLMFVTCK 410 (411)
Q Consensus 396 ~gtI~i~~i~tGk~~ 410 (411)
|+||||+.|-|+.
T Consensus 432 --TLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 432 --TLKVWDVRTKKLK 444 (480)
T ss_pred --eEEEEEeeeeeec
Confidence 9999999999874
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=127.20 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=121.1
Q ss_pred ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEE----eEeeeccccCCcceeeeeecce--e-EEeecCceeeEE
Q 015220 235 NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVL----KSFNHLLHRNKKVDFIEQFNEK--L-LVKQENENLQIL 305 (411)
Q Consensus 235 ~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L----~t~~~LL~h~K~I~FLE~~~ek--l-lIKQe~~~LkI~ 305 (411)
.|..+..+ |+..|++..... -|+||++.++... .....+-+|+++|..++.+++. + +-...+..|+||
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~Dg---tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDG---TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCC---EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 89999999 477777665433 5899999987431 1122377999999999999863 3 345678999999
Q ss_pred EcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEE
Q 015220 306 DVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (411)
Q Consensus 306 dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i 380 (411)
|+.+++... +.-.|+..+..+..+ .+++|. .|++|+|||++ |+.+.++.+|... ....+.-.++++.|
T Consensus 154 Dl~tg~~~~---~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~----~~~~~~w~~~~~~i 226 (493)
T PTZ00421 154 DVERGKAVE---VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA----KSQRCLWAKRKDLI 226 (493)
T ss_pred ECCCCeEEE---EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC----cceEEEEcCCCCeE
Confidence 999998876 666788888888765 678888 89999999999 9999999999762 23456667888999
Q ss_pred EEEecCCCCCccccCCceEEEeeeccee
Q 015220 381 ISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 381 iS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++.+.++ ...|+|++||+.+.+
T Consensus 227 vt~G~s~------s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 227 ITLGCSK------SQQRQIMLWDTRKMA 248 (493)
T ss_pred EEEecCC------CCCCeEEEEeCCCCC
Confidence 8876554 223699999997654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=136.35 Aligned_cols=183 Identities=13% Similarity=0.203 Sum_probs=160.1
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
.|+-+-|++|++|++.|.|+|.+.+++..-+++ -|=.+.++ -|...|+. .|.+.- .+|+-..-++++- +.|
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFata--s~D~tA-rLWs~d~~~PlRi---fag 533 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATA--SHDQTA-RLWSTDHNKPLRI---FAG 533 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEec--CCCcee-eeeecccCCchhh---hcc
Confidence 567789999999999999999999998777777 56777788 78888877 444443 9999999888887 679
Q ss_pred cCCcceeeeeecceeEEeec--CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cc
Q 015220 279 RNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Ge 351 (411)
|..+|+.+..||..-+++-+ ++..++||+.+|...++= -+|..-+++|+.+ ..+.|+ .|+.|.+||+. |.
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 99999999999999988864 678999999999998843 4699999999999 567777 99999999999 89
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++..|-+|.+ .++++-+|.||-+|+||+.|. ++.+||+..-.
T Consensus 611 ~v~~l~~Ht~-----ti~SlsFS~dg~vLasgg~Dn----------sV~lWD~~~~~ 652 (707)
T KOG0263|consen 611 LVKQLKGHTG-----TIYSLSFSRDGNVLASGGADN----------SVRLWDLTKVI 652 (707)
T ss_pred chhhhhcccC-----ceeEEEEecCCCEEEecCCCC----------eEEEEEchhhc
Confidence 9999999988 999999999999999999999 99999987543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-11 Score=129.15 Aligned_cols=272 Identities=18% Similarity=0.259 Sum_probs=199.3
Q ss_pred ccccccccceEEEeeccceehhhhcccc-ceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeee
Q 015220 89 LPFLRKRSKIIEIVAARDIVFALAQSGV-CAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRC 167 (411)
Q Consensus 89 l~~l~~RS~V~EIv~a~dii~~L~~sG~-c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~c 167 (411)
+.++--|+.|.-+-...|=++.++-+|= --.|++.|.+ |..-...+ .|.+-++=. +|.+|+ ..+.+-...-.-|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k--ciRTi~~~-y~l~~~Fvp-gd~~Iv-~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK--CIRTITCG-YILASKFVP-GDRYIV-LGTKNGELQVFDL 441 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc--eeEEeccc-cEEEEEecC-CCceEE-EeccCCceEEEEe
Confidence 3345578888888777777776665543 3456666666 44333333 333333333 244443 3555555455667
Q ss_pred Eeee-hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce-------EEEEec-------
Q 015220 168 RSTR-IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSIS------- 232 (411)
Q Consensus 168 r~~~-~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-------~iysLs------- 232 (411)
.+.+ +|-|++ +.| .+. +-++ -++++=.+-.+.|+++|+||++-.. ...+|.
T Consensus 442 aS~~l~Eti~A---Hdg-aIW-si~~---------~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel 507 (888)
T KOG0306|consen 442 ASASLVETIRA---HDG-AIW-SISL---------SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL 507 (888)
T ss_pred ehhhhhhhhhc---ccc-cee-eeee---------cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence 7776 555552 111 111 1111 2455666667899999999987432 223333
Q ss_pred cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEccc
Q 015220 233 DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRN 309 (411)
Q Consensus 233 ~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t 309 (411)
.++|..+++| ||-+||++.=.+ -+||+-+.|=+-.-+ |-||+-||-.|.+++|.=+|. +.+.++|||-|.=
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdn---TVkVyflDtlKFfls---LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDN---TVKVYFLDTLKFFLS---LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccC---eEEEEEecceeeeee---ecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence 3589999999 999999987654 478999998777777 999999999999999876554 4789999999999
Q ss_pred ceEEEeeccccCCCce---EEEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEe
Q 015220 310 FELTEVSRTEFMTPSA---FIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 310 ~e~~~v~~T~f~hpsA---fifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
|++.+ ..|+|-.+ +-|+..+++|+|- +|++|+=||=. =+.+.+|.+|.. ++-.++++|+|++.||+|
T Consensus 582 GDCHK---S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-----ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 582 GDCHK---SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-----EVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred chhhh---hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-----eeeeeEEcCCCCeEEecc
Confidence 99999 99998877 5566777888887 99999999987 789999999999 999999999999999999
Q ss_pred cCCCCCccccCCceEEEee
Q 015220 385 KADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 385 ~d~~~~~~~~~~gtI~i~~ 403 (411)
-|+ +|.+|.
T Consensus 654 hD~----------sIRlwE 662 (888)
T KOG0306|consen 654 HDK----------SIRLWE 662 (888)
T ss_pred CCc----------eeEeee
Confidence 999 999996
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-10 Score=100.12 Aligned_cols=199 Identities=14% Similarity=0.197 Sum_probs=134.5
Q ss_pred CCeEEeeCCCCeE-EEeecCCCeEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 195 PGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 195 PgfvEFDd~NGki-Lt~~~~ds~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
|..+-|+. +|+. ++....++.+++||+.+.+.+.++.. ..+..+.++ +|..|++.....+ .+++|++++++.+.
T Consensus 33 ~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~--~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 33 PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDN--LVTVIDIETRKVLA 109 (300)
T ss_pred CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCC--eEEEEECCCCeEEe
Confidence 55577864 5654 46677899999999999998877763 467778888 7777766654333 69999999999888
Q ss_pred EeeeccccCCcceeeeeecceeE--EeecC-ceeeEEEcccceEEEeeccccCCCceEEEEeece-eEEEE-ecCeEEEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKLL--VKQEN-ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTF-RNRTVAVW 346 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekll--IKQe~-~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sq-lFlSf-sd~tI~iW 346 (411)
.+.. ...+.-+..++++.+ +..++ ..+..||+.+++...... .-..|..+.|-...+ ++++. .+++|.+|
T Consensus 110 ~~~~----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 110 EIPV----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVI 184 (300)
T ss_pred EeeC----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence 7542 234566788877653 33443 346778999988765211 112454444433334 44565 58999999
Q ss_pred ecC-Cceeeeeccccc-cCCCCc-cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 347 NFR-GELVTSFEDHLL-WHPDCN-TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~-~~~~c~-~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+. |+.++++..+.. .++.+. -..+.++|||+.++..+.++ ++|.+||+.+|+++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~---------~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA---------NRVAVVDAKTYEVL 242 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC---------CeEEEEECCCCcEE
Confidence 999 888887765532 122222 22577899999876654332 38999999999864
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=125.42 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=139.8
Q ss_pred CceEEEEeccC--ceeEEEEeCC-EEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec--ceeEEeec
Q 015220 224 NYTMLYSISDK--NVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQE 298 (411)
Q Consensus 224 ~Ys~iysLs~~--~VqeIkISdG-~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe 298 (411)
+|++-..|+.+ =|..+.+-|| .+++.+..- --||||||.||++.-+ |-||..-+.=+++++ -|++-.-+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~D---rtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSAD---RTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCC---ceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecC
Confidence 57777888877 6888999854 444444322 3489999999999999 778888888888775 47788889
Q ss_pred CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEE
Q 015220 299 NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 373 (411)
Q Consensus 299 ~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~I 373 (411)
+.-+|+|||..++.++ .+.+|=+++.+|+.- ..++|+ +|-++||||.| -..|-.|.||.+ -+..|.-
T Consensus 214 dk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-----~V~~V~~ 285 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-----PVASVMC 285 (460)
T ss_pred CCeeEEEechhhhhHH---HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-----cceeEEe
Confidence 9999999999999998 999999999999866 667777 99999999999 789999999999 8999999
Q ss_pred cCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 374 TSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 374 s~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|..--||+||-|. ||.+||+..||-.
T Consensus 286 ~~~dpqvit~S~D~----------tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 286 QPTDPQVITGSHDS----------TVRLWDLRAGKTM 312 (460)
T ss_pred ecCCCceEEecCCc----------eEEEeeeccCcee
Confidence 98888899999998 9999999999854
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-11 Score=127.85 Aligned_cols=259 Identities=15% Similarity=0.176 Sum_probs=192.4
Q ss_pred ceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEe----eehhhhhhCCCC
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS----TRIEYIRRGKPD 181 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~----~~~~~i~~gk~~ 181 (411)
+.+++-+.|+--+.|+.-|-. |.|=++++|+|-||---.-++-|++.| +|. |-.==|- ...-++..+--.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~--c~ii~GH~e~vlSL~~~~~g~llat~s---KD~-svilWr~~~~~~~~~~~a~~~gH 410 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSY--CQIIPGHTEAVLSLDVWSSGDLLATGS---KDK-SVILWRLNNNCSKSLCVAQANGH 410 (775)
T ss_pred ceEEEEeCCCceEEEecCCCc--eEEEeCchhheeeeeecccCcEEEEec---CCc-eEEEEEecCCcchhhhhhhhccc
Confidence 677888899999999766554 999999999999998555455555543 333 2111111 000011111110
Q ss_pred CCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce---EEEEe--------ccCceeEEEEe-CCEEEEE
Q 015220 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSI--------SDKNVQEIKIS-PGIMLLI 249 (411)
Q Consensus 182 ~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys---~iysL--------s~~~VqeIkIS-dG~~Lai 249 (411)
. ..=|=|-+.-.-.-.+++.++|.++|+|+|...+ +.+.+ -|++|-.+.|+ +.-++|+
T Consensus 411 ~----------~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 411 T----------NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred c----------cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 1 1112233333333457888999999999998832 22233 26699999999 7777888
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEE
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFI 327 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfi 327 (411)
...-+. .|||++++++++++ |-||++-|=.++-.+--+ .=.+++..+|||.+.+.+..+ |.-+|.+|+.
T Consensus 481 ~SqDkt---aKiW~le~~~l~~v---LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk---T~eGH~~aVl 551 (775)
T KOG0319|consen 481 GSQDKT---AKIWDLEQLRLLGV---LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK---TFEGHTSAVL 551 (775)
T ss_pred cccccc---eeeecccCceEEEE---eeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee---eecCccceeE
Confidence 877764 79999999999999 889999999998887744 556799999999999999999 9999999986
Q ss_pred ---EEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 328 ---FLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 328 ---fLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
|+..-+-|+|. +||.|.+||.. +|=++|+..|-. -+=.+..+++.+.+++|..|. .|..|
T Consensus 552 ra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-----rvWaL~~~~~~~~~~tgg~Dg----------~i~~w 616 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-----RVWALSVSPLLDMFVTGGGDG----------RIIFW 616 (775)
T ss_pred eeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-----eeEEEeecCccceeEecCCCe----------EEEEe
Confidence 44444556666 99999999999 999999999988 788899999999999999986 99998
Q ss_pred ee
Q 015220 403 LL 404 (411)
Q Consensus 403 ~i 404 (411)
.=
T Consensus 617 kD 618 (775)
T KOG0319|consen 617 KD 618 (775)
T ss_pred ec
Confidence 53
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-11 Score=127.29 Aligned_cols=249 Identities=14% Similarity=0.177 Sum_probs=177.7
Q ss_pred eecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecC---CCceeeeEeeehhhhhhCCCCCCCcceeecccCCCC
Q 015220 120 FCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASD---NFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG 196 (411)
Q Consensus 120 f~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd---~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg 196 (411)
||-.+.+..--|=..+|||--.=|.++..+-|.+++--... +++.+.|. |.+|-.+ .+-
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------ii~GH~e---------~vl--- 369 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------IIPGHTE---------AVL--- 369 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE------EEeCchh---------hee---
Confidence 34444554445556788888888999887777775522110 23333343 3333321 111
Q ss_pred eEEee-CCCCeEEEeecCCCeEEEEEeeCce----EEEEeccC--ceeEEEEe---CCEEEEEEecCCCceeeEEEEecC
Q 015220 197 FVEFD-DVNGKVLTYSAQDSIYKVFDLKNYT----MLYSISDK--NVQEIKIS---PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 197 fvEFD-d~NGkiLt~~~~ds~ykVWdL~~Ys----~iysLs~~--~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
-.| --.|--|++++-|++.++|.|.+-. ++...+.+ .|-.|.+| ...|+.++ +---||+|+|..
T Consensus 370 --SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS----~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 370 --SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS----QDCTLKLWDLPK 443 (775)
T ss_pred --eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec----CCceEEEecCCC
Confidence 122 2345788999999999999995533 33444544 78888888 23333332 235699999998
Q ss_pred CcEEeEeee------ccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeE
Q 015220 267 GTVLKSFNH------LLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLF 335 (411)
Q Consensus 267 G~~L~t~~~------LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlF 335 (411)
.+....-.. -..|-|+|+.+++.++.=||+- .+.+-||||+-..+..- |+-+|...+-++-.+ |++
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~---vLsGH~RGvw~V~Fs~~dq~l 520 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG---VLSGHTRGVWCVSFSKNDQLL 520 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE---EeeCCccceEEEEecccccee
Confidence 655543222 2578999999999999988875 67899999999777776 999999999888766 889
Q ss_pred EEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 336 LTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 336 lSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|- .|.||+||+.. ++-+.|||||-. .+=.+..=.+|..|||+++|- -||||||+|++|+
T Consensus 521 aT~SgD~TvKIW~is~fSClkT~eGH~~-----aVlra~F~~~~~qliS~~adG----------liKlWnikt~eC~ 582 (775)
T KOG0319|consen 521 ATCSGDKTVKIWSISTFSCLKTFEGHTS-----AVLRASFIRNGKQLISAGADG----------LIKLWNIKTNECE 582 (775)
T ss_pred EeccCCceEEEEEeccceeeeeecCccc-----eeEeeeeeeCCcEEEeccCCC----------cEEEEeccchhhh
Confidence 999 89999999999 999999999987 444444445677889999985 9999999999996
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=113.00 Aligned_cols=183 Identities=10% Similarity=0.145 Sum_probs=138.0
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE--EeEeeeccc
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV--LKSFNHLLH 278 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~--L~t~~~LL~ 278 (411)
.-.+|++.+-|.|+|+|-..+..+.++|.+. +|-...|+ |+.+||..-..| |.|+||.++.+ +.+ .-+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh----vRlyD~~S~np~Pv~t---~e~ 81 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH----VRLYDLNSNNPNPVAT---FEG 81 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe----eEEEEccCCCCCceeE---Eec
Confidence 6789999999999999999999999999977 55555555 999998877665 67889999886 555 458
Q ss_pred cCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee--cee-EEEE-ecCeEEEEecCCc-
Q 015220 279 RNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE--NQL-FLTF-RNRTVAVWNFRGE- 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~--sql-FlSf-sd~tI~iWn~~Ge- 351 (411)
|+|.|-.+--.-++. +--+|+...|||||++-+.. -+|-|++.+-.+-. +|- ++++ +++-|+|||+.-+
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q----R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ----RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc----hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 889999888777776 55568899999999995544 46778888876554 332 5555 9999999998743
Q ss_pred -----------eeeeeccc----c-----------------------------ccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 352 -----------LVTSFEDH----L-----------------------------LWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 352 -----------l~~s~e~H----~-----------------------------~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.++++.=| + .-+-+-.+-..-.|||++.|+..|+|+
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence 22222211 0 001111344567899999999999999
Q ss_pred CCCccccCCceEEEeeecce
Q 015220 388 SDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 388 ~~~~~~~~~gtI~i~~i~tG 407 (411)
|++||+..+=
T Consensus 238 ----------tv~iwn~~~~ 247 (311)
T KOG0315|consen 238 ----------TVKIWNTDDF 247 (311)
T ss_pred ----------eEEEEecCCc
Confidence 9999998764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-10 Score=113.34 Aligned_cols=188 Identities=13% Similarity=0.191 Sum_probs=150.0
Q ss_pred cCCCCe---EEeeCCCCeEEEeecCCCeEEEEE-eeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEe
Q 015220 192 LKWPGF---VEFDDVNGKVLTYSAQDSIYKVFD-LKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 192 l~~Pgf---vEFDd~NGkiLt~~~~ds~ykVWd-L~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I 264 (411)
..|+|= .+|+. +|--+++++.|..+=+|+ +.+=+---.++.+ -|+++.-. ||-+|+.. .+..+ +..||.
T Consensus 44 ~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~-gtDk~--v~~wD~ 119 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC-GTDKT--VRGWDA 119 (338)
T ss_pred CCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe-cCCce--EEEEec
Confidence 345554 48988 999999999999999999 4444444455555 99999998 77765443 34444 578999
Q ss_pred cCCcEEeEeeeccccCCcceeeeeeccee-EEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEE
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLT 337 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlS 337 (411)
+||+..+. .-+|.+=|+.+....=++ ||.+ .+..+|+||+++++.++ |. ..+....++..+ |.+--
T Consensus 120 ~tG~~~rk---~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~---t~-~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 120 ETGKRIRK---HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK---TF-ENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ccceeeeh---hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh---cc-ccceeEEEEEecccccceeec
Confidence 99999998 447888888888766666 5554 67899999999999987 32 234445555544 77777
Q ss_pred EecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 338 FRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 338 fsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+-|+.|.+||++ ++.+-+++||.. -+..+++|++|..+.|-+-|. |+.+||+.
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~D-----tIt~lsls~~gs~llsnsMd~----------tvrvwd~r 246 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHAD-----TITGLSLSRYGSFLLSNSMDN----------TVRVWDVR 246 (338)
T ss_pred cccCceeeeccccCcceEEeecccC-----ceeeEEeccCCCccccccccc----------eEEEEEec
Confidence 799999999999 999999999999 999999999999999999998 99999974
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-11 Score=121.79 Aligned_cols=190 Identities=13% Similarity=0.160 Sum_probs=144.1
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
++||-+| +.+++...|++.++|+...+.++-+|++| +|.++++.-++--+++ .+...-+|+|+|+.+.+.++
T Consensus 225 ~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs--gs~DRtiK~WDl~k~~C~kt--- 298 (459)
T KOG0288|consen 225 IDFDSDN-KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS--GSADRTIKLWDLQKAYCSKT--- 298 (459)
T ss_pred eeecCCC-ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee--ccccchhhhhhhhhhheecc---
Confidence 6676554 55566788999999999999999999977 9999999854432222 23446799999999999999
Q ss_pred ccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEEecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTFRNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSfsd~tI~iWn~~ 349 (411)
.|+-++--+ |+.. ...+.+ -++||+.||.++..+.. +.-++- .+..|..+ +++-+.+|+++.+-|++
T Consensus 299 ~l~~S~cnD-I~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~---sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 299 VLPGSQCND-IVCS--ISDVISGHFDKKVRFWDIRSADKTR---SVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred ccccccccc-eEec--ceeeeecccccceEEEeccCCceee---EeecCc-ceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 555544333 5554 333444 46789999999999887 443343 78888877 55555599999999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+--++-.-.-.++-.-|..+.+-+|||++++..||.|. +++||+.+||||-
T Consensus 372 t~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg----------sv~iW~v~tgKlE 422 (459)
T KOG0288|consen 372 TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG----------SVYIWSVFTGKLE 422 (459)
T ss_pred cccEEEEeeccccccccccceeEECCCCceeeeccCCC----------cEEEEEccCceEE
Confidence 66444333345556667799999999999999999996 9999999999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-10 Score=120.42 Aligned_cols=325 Identities=15% Similarity=0.166 Sum_probs=216.4
Q ss_pred cchHH-HhhhcccceeeeccCCCCccc-cccccccccc------ceEEEeeccc--eehhhhccccceeeeccc--ccEE
Q 015220 61 TDAQE-RFRNIRLQEEYDTHDPKGHCS-MVLPFLRKRS------KIIEIVAARD--IVFALAQSGVCAAFCRET--NQRI 128 (411)
Q Consensus 61 ~~~~~-~f~~~~l~~~fd~~d~~~~~~-~~l~~l~~RS------~V~EIv~a~d--ii~~L~~sG~c~af~~~t--~~~i 128 (411)
.++|. +|=-.+....-.+|..++-.. .+.||...|. .|+-|=-..| +++.=..-=..+.|+... |-+.
T Consensus 103 ~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~ 182 (893)
T KOG0291|consen 103 KFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT 182 (893)
T ss_pred EECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce
Confidence 34444 232334444445555555554 5677744443 3444433333 233222223344555433 4458
Q ss_pred EEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCc-eeeeEeeehhhhhhCCCCCCCc----ceeecccCCCCeE-----
Q 015220 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS-SLRCRSTRIEYIRRGKPDAGFA----LFESESLKWPGFV----- 198 (411)
Q Consensus 129 c~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s-~L~cr~~~~~~i~~gk~~~~~~----LF~~~~l~~Pgfv----- 198 (411)
|.+|.-.|-||-+ |+-+++..++||| .|..- .-.|-.-|-+.-++.|=.+|.. +=..|--.||.|-
T Consensus 183 ~~l~gHkd~Vvac-fF~~~~~~l~tvs---kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k 258 (893)
T KOG0291|consen 183 YALNGHKDYVVAC-FFGANSLDLYTVS---KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKK 258 (893)
T ss_pred EeccCCCcceEEE-EeccCcceEEEEe---cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEe
Confidence 8888777766655 6667778899987 33311 1233322322222211111100 0001122333332
Q ss_pred EeeCCC-Ce-----------EEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 199 EFDDVN-GK-----------VLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 199 EFDd~N-Gk-----------iLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
-|-..| .+ +|+-.-..+.+..+.|-++.+|++|+ ++.|+.+.+. -|--||+.-+. .--|-||.
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVwe 336 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWE 336 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEE
Confidence 233333 22 33333347888899999999996665 7799999998 77788888766 44577899
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf 338 (411)
.++..-+.. ..||...|..|+-++|+++|+- ++.|+||||.++|-++. |--.|.+++..+-.+ +..|+-
T Consensus 337 WqsEsYVlK---QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v---TFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 337 WQSESYVLK---QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV---TFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred eeccceeee---ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE---EeccCCCceEEEEEEecCCEEEEe
Confidence 999888877 8899999999999999999987 78999999999999998 999999998887765 557777
Q ss_pred -ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 339 -RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 339 -sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|||||.||+. +-=.|||..-.. ..-..|+..|-|++.+.|..|. =-|.||+..||+++
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p----~QfscvavD~sGelV~AG~~d~---------F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEP----IQFSCVAVDPSGELVCAGAQDS---------FEIFVWSVQTGQLL 471 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCc----eeeeEEEEcCCCCEEEeeccce---------EEEEEEEeecCeee
Confidence 89999999999 999999987666 2456688889999999999885 36999999999986
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-10 Score=120.86 Aligned_cols=182 Identities=13% Similarity=0.158 Sum_probs=152.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
-++|..++.+++|+-+||||.+..-|+.+-+++ .|..+..+ .|.+|+.+.=- --+..||+..+.-.+||..
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD---GtVRAwDlkRYrNfRTft~--- 432 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD---GTVRAWDLKRYRNFRTFTS--- 432 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecC---CeEEeeeecccceeeeecC---
Confidence 378999999999999999999999999999988 89999999 78776554322 2478999999999999664
Q ss_pred cCCcceeeeeecc--eeEE---eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 279 RNKKVDFIEQFNE--KLLV---KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 279 h~K~I~FLE~~~e--kllI---KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
-.|+||-++..| +.++ .|++=.|.+|+++||++.. .+-+|-..+..|..+ ++++|+ .|+|||+||.-
T Consensus 433 -P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 433 -PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred -CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---hhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 389999888877 6655 4678899999999999999 899999999988877 789999 88999999988
Q ss_pred Cc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 350 GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 350 Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+. -+-+++-. . .+-++..+|||+-|.+..-|. -|.+||++.++-
T Consensus 509 ~s~~~vEtl~i~-s-----dvl~vsfrPdG~elaVaTldg----------qItf~d~~~~~q 554 (893)
T KOG0291|consen 509 SSSGTVETLEIR-S-----DVLAVSFRPDGKELAVATLDG----------QITFFDIKEAVQ 554 (893)
T ss_pred ccCceeeeEeec-c-----ceeEEEEcCCCCeEEEEEecc----------eEEEEEhhhcee
Confidence 55 55566532 2 467899999999999988774 999999987764
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-11 Score=123.77 Aligned_cols=191 Identities=16% Similarity=0.233 Sum_probs=149.5
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeC-ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
++.|-...|.-|.+++.|+.++||++.+ +.++++-.++ -|.+++.| +|.-++.. .=--++|+||.|||+++-+
T Consensus 219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~---sfD~~lKlwDtETG~~~~~ 295 (503)
T KOG0282|consen 219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSA---SFDRFLKLWDTETGQVLSR 295 (503)
T ss_pred hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeee---ecceeeeeeccccceEEEE
Confidence 4667788999999999999999999999 9999888877 89999999 77755443 3446899999999999998
Q ss_pred eeeccccCCcceeeeeecce--eEEe-ecCceeeEEEcccceEEEeeccccCCC---ceEEEEeeceeEEEE-ecCeEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVRNFELTEVSRTEFMTP---SAFIFLYENQLFLTF-RNRTVAV 345 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hp---sAfifLy~sqlFlSf-sd~tI~i 345 (411)
|. -.+.+..+.-+++. +++. --+.+|+.||+++||... ++.-|= ....|+..+.-|+|- .|++++|
T Consensus 296 f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 296 FH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred Ee----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 54 56888999999987 3443 467899999999999776 444443 456789999999999 6779999
Q ss_pred EecC-Cceee----------------------------------------------eeccccccCCCCccceEEEcCCCC
Q 015220 346 WNFR-GELVT----------------------------------------------SFEDHLLWHPDCNTNNIYITSDQD 378 (411)
Q Consensus 346 Wn~~-Gel~~----------------------------------------------s~e~H~~~~~~c~~n~i~Is~Dqd 378 (411)
|+.+ +-+.. .|+||.. +.|.+ .+--||||+
T Consensus 369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v--aGys~-~v~fSpDG~ 445 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV--AGYSC-QVDFSPDGR 445 (503)
T ss_pred EEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec--cCcee-eEEEcCCCC
Confidence 9987 54332 3444433 22221 345699999
Q ss_pred EEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 379 LIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 379 ~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|+||..|- .++|||-.|-|++
T Consensus 446 ~l~SGdsdG----------~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 446 TLCSGDSDG----------KVNFWDWKTTKLV 467 (503)
T ss_pred eEEeecCCc----------cEEEeechhhhhh
Confidence 999999885 9999999887653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-09 Score=108.09 Aligned_cols=200 Identities=17% Similarity=0.211 Sum_probs=142.1
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
.+--+||++ ||..|+.+.+|.+++++|..+.+++.+|..+ .++-++.-....-+++..++.---|+.++|+|-+.++
T Consensus 16 ~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 16 KINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred ceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 355689986 5666666899999999999999999999977 8888888855555666666666789999999999999
Q ss_pred EeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeec-----cccCCCceEEEEeec------------
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSR-----TEFMTPSAFIFLYEN------------ 332 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~-----T~f~hpsAfifLy~s------------ 332 (411)
- .-||.+.|..|+..|-.= |=.+.+..+++||++..+.+-.-+ -.=+.|+.-+|...+
T Consensus 95 Y---F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 95 Y---FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred E---cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 9 559999999999987544 555678899999999766554111 111244444442211
Q ss_pred -----------------------------eeEEEEecCeEEEEe-cCCceeeeeccccccCCCCccceEEEcCCCCEEEE
Q 015220 333 -----------------------------QLFLTFRNRTVAVWN-FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 333 -----------------------------qlFlSfsd~tI~iWn-~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
-+++|=.++.+.+-| ++|++.-+|++|..---. .=....|||+++|+|
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~--~~~a~ftPds~Fvl~ 249 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL--PLSATFTPDSKFVLS 249 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc--ceeEEECCCCcEEEE
Confidence 112222333333333 236666677766651111 125678999999999
Q ss_pred EecCCCCCccccCCceEEEeeecceee
Q 015220 383 YCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 383 ~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|+.|. +|+||+++||+-
T Consensus 250 gs~dg----------~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 250 GSDDG----------TIHVWNLETGKK 266 (311)
T ss_pred ecCCC----------cEEEEEcCCCcE
Confidence 99886 999999999974
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=122.78 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=141.5
Q ss_pred CCeEEEeecCCCeEEEEEeeCce--------EE-----------------------EEeccC--ceeEEEEe-CCEEEEE
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYT--------ML-----------------------YSISDK--NVQEIKIS-PGIMLLI 249 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys--------~i-----------------------ysLs~~--~VqeIkIS-dG~~Lai 249 (411)
++..|+.+-+|+.++||.|++-+ .+ ++|.+| -|=+.++| +.-||+.
T Consensus 389 dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlS 468 (707)
T KOG0263|consen 389 DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLS 468 (707)
T ss_pred CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceee
Confidence 34488888899999999999742 11 222222 45566666 4444444
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeec--CceeeEEEcccceEEEeeccccCCCceEE
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFI 327 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfi 327 (411)
... -..+.||++.|-..+.... ||.-||=++...|=+.+.++. +..=++|..-+..+-+|= =+|=+-+=
T Consensus 469 cSE---D~svRLWsl~t~s~~V~y~---GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif---aghlsDV~ 539 (707)
T KOG0263|consen 469 CSE---DSSVRLWSLDTWSCLVIYK---GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF---AGHLSDVD 539 (707)
T ss_pred ccC---CcceeeeecccceeEEEec---CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh---cccccccc
Confidence 332 2568999999999999844 999999999999999988874 457788988887666632 22333333
Q ss_pred E---EeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 328 F---LYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 328 f---Ly~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
| =-.+.+.+|+ +|+|+|+||-. |.-||-|.||.. -+..++.||+|..|+||+.|. .|+||
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-----~V~al~~Sp~Gr~LaSg~ed~----------~I~iW 604 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-----PVTALAFSPCGRYLASGDEDG----------LIKIW 604 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-----ceEEEEEcCCCceEeecccCC----------cEEEE
Confidence 3 2355888999 89999999999 999999999999 999999999999999999997 99999
Q ss_pred eecceeee
Q 015220 403 LLMFVTCK 410 (411)
Q Consensus 403 ~i~tGk~~ 410 (411)
||-+|+++
T Consensus 605 Dl~~~~~v 612 (707)
T KOG0263|consen 605 DLANGSLV 612 (707)
T ss_pred EcCCCcch
Confidence 99999864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-09 Score=108.71 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=152.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEE--EEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCC------cEEeE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG------TVLKS 272 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG------~~L~t 272 (411)
-++.|-+++.+||+-+-|||.-|.... ..|...=|+.+.+| .|.|+|-.-=.+. -.|+++.+- ++-+.
T Consensus 64 s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~---Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 64 STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK---CSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred cCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCce---eEEEecccccccccceeeee
Confidence 367888999999999999999987765 44556689999999 7898887654443 346666644 22223
Q ss_pred eeeccccCCcceeeeeecceeEE-eecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVW 346 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllI-KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iW 346 (411)
|-+|.-=+-..+-.+|.++| .+++.+.-+||+-+|+.+. ..-+|.--+..|..+ +.|+|+ .|++..+|
T Consensus 141 ---l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~---~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 141 ---LAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ---VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred ---ecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEE---EecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence 67888888777777788855 5689999999999999998 666899999998866 789999 99999999
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|.| |--+.+|++|.. -+|+|-.-|+|+-+++||.|. |.+|+||.++.
T Consensus 215 D~R~~~c~qtF~ghes-----DINsv~ffP~G~afatGSDD~----------tcRlyDlRaD~ 262 (343)
T KOG0286|consen 215 DVRSGQCVQTFEGHES-----DINSVRFFPSGDAFATGSDDA----------TCRLYDLRADQ 262 (343)
T ss_pred eccCcceeEeeccccc-----ccceEEEccCCCeeeecCCCc----------eeEEEeecCCc
Confidence 999 888889999999 999999999999999999997 99999998864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=108.14 Aligned_cols=183 Identities=11% Similarity=0.124 Sum_probs=140.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
++|---.+.+-|++.|.|||.+.+.-+.+-+| .|.++.+| |.-.+....+-+ -||+|+.-.+..+.-.. -.+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk---Tiklwnt~g~ck~t~~~--~~~ 147 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK---TIKLWNTLGVCKYTIHE--DSH 147 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc---eeeeeeecccEEEEEec--CCC
Confidence 34555666666999999999999888777766 99999999 666666666554 48999998776655311 011
Q ss_pred CCcceeeeeecc--eeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-C
Q 015220 280 NKKVDFIEQFNE--KLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-G 350 (411)
Q Consensus 280 ~K~I~FLE~~~e--kllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-G 350 (411)
+-=|..+--+|. .-+| .+++..+|+|||.+-+... +.-+|..-+..++.| .+..++ .|+++-+||++ |
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 333445555554 3344 4588999999999998887 888999999999999 778888 99999999999 8
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+-+-+|+.-. .++++..+|.-=.|. .-.+. +|+|||+.+++|+
T Consensus 225 k~lysl~a~~------~v~sl~fspnrywL~-~at~~----------sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 225 KNLYSLEAFD------IVNSLCFSPNRYWLC-AATAT----------SIKIWDLESKAVV 267 (315)
T ss_pred ceeEeccCCC------eEeeEEecCCceeEe-eccCC----------ceEEEeccchhhh
Confidence 8888886544 599999999865554 44444 7999999999886
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-11 Score=122.78 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=122.6
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE----EEe------ccCceeEEEEe-CCEEEEEEecCCCceeeEEE
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML----YSI------SDKNVQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i----ysL------s~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl 262 (411)
||.--.| -|+|.-|++++-|+-+.|||+.+.+.= |+- -|+-|.-|..| |.-|||.+.... -||||
T Consensus 215 h~EcA~F-SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG---kIKvW 290 (508)
T KOG0275|consen 215 HVECARF-SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG---KIKVW 290 (508)
T ss_pred chhheee-CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC---cEEEE
Confidence 4444445 478999999999999999999998743 332 35588888899 999998887665 47999
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF 338 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf 338 (411)
.|+||++|+.|.- . |...+.+|-.+ |++-+.
T Consensus 291 ri~tG~ClRrFdr--A-------------------------------------------HtkGvt~l~FSrD~SqiLS~s 325 (508)
T KOG0275|consen 291 RIETGQCLRRFDR--A-------------------------------------------HTKGVTCLSFSRDNSQILSAS 325 (508)
T ss_pred EEecchHHHHhhh--h-------------------------------------------hccCeeEEEEccCcchhhccc
Confidence 9999999987541 2 44444555433 555455
Q ss_pred ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 339 RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 339 sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|.|+||--+. |..+.-|.||.. ++|.+-.|+||.-|||+|.|- ||++||.+|++|+
T Consensus 326 fD~tvRiHGlKSGK~LKEfrGHsS-----yvn~a~ft~dG~~iisaSsDg----------tvkvW~~KtteC~ 383 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGKCLKEFRGHSS-----YVNEATFTDDGHHIISASSDG----------TVKVWHGKTTECL 383 (508)
T ss_pred ccceEEEeccccchhHHHhcCccc-----cccceEEcCCCCeEEEecCCc----------cEEEecCcchhhh
Confidence 67888888888 889999999999 899999999999999999996 9999999999996
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.5e-09 Score=89.91 Aligned_cols=185 Identities=16% Similarity=0.233 Sum_probs=137.8
Q ss_pred CCCe-EEEeecC-CCeEEEEEeeC-ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGK-VLTYSAQ-DSIYKVFDLKN-YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGk-iLt~~~~-ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
+++. .++.... ++.+++||..+ ...+..+..+ .|..+..+ ++..++.... ....+++|++.+++.+.++.
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-- 195 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKPLSTLA-- 195 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCceEEeec--
Confidence 3444 5555445 99999999998 7777666644 89999999 6654444432 67889999999999999844
Q ss_pred cccCCcceeeeeeccee-EEe--ecCceeeEEEcccceEEEeeccccCCCceE--EEEeeceeEEEE-ecCeEEEEecCC
Q 015220 277 LHRNKKVDFIEQFNEKL-LVK--QENENLQILDVRNFELTEVSRTEFMTPSAF--IFLYENQLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekl-lIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAf--ifLy~sqlFlSf-sd~tI~iWn~~G 350 (411)
+|..++..++..+++- ++. ..+..+++||+.+++.... +..+|+... .|......+++. .|+++++|+.+.
T Consensus 196 -~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 196 -GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred -cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecC
Confidence 5899999999997773 444 5889999999997777762 355565552 233333566666 999999999993
Q ss_pred c--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 351 E--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 351 e--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
. .+..+.+|.. .+..+...|+++.+++++.|. ++.+||+.+++.
T Consensus 273 ~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~d~----------~~~~~~~~~~~~ 318 (466)
T COG2319 273 SSSLLRTLSGHSS-----SVLSVAFSPDGKLLASGSSDG----------TVRLWDLETGKL 318 (466)
T ss_pred CCcEEEEEecCCc-----cEEEEEECCCCCEEEEeeCCC----------cEEEEEcCCCce
Confidence 3 2555577755 788889999999999988776 799999888764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-09 Score=106.49 Aligned_cols=328 Identities=17% Similarity=0.180 Sum_probs=225.4
Q ss_pred cccchhhhhhhhccccccCCcceec--------cchHHHhhhcccc------eee-eccCCCCcccccccccccccceEE
Q 015220 36 DGFVNSVKKLQRREISSKRDRAFTM--------TDAQERFRNIRLQ------EEY-DTHDPKGHCSMVLPFLRKRSKIIE 100 (411)
Q Consensus 36 ~~~~~~~~k~~~~~i~~~~~~~~~~--------~~~~~~f~~~~l~------~~f-d~~d~~~~~~~~l~~l~~RS~V~E 100 (411)
.+..+-|-||-+.|=+....+-|-. ++-.|--+..++- -|| .-+.|+...-- +-.--=|--
T Consensus 35 ~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~----~~hdDWVSs 110 (423)
T KOG0313|consen 35 YGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQC----FLHDDWVSS 110 (423)
T ss_pred ccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCcccc----ccchhhhhh
Confidence 4456778888888877666665521 3344444443332 233 33444332111 111111222
Q ss_pred EeeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC
Q 015220 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (411)
Q Consensus 101 Iv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~ 180 (411)
|=.|.+.|+-=++-|+.+.+|+. |+-+-.+=...+-+-...+|+++..+--+|| +|-| +.|.=-.+.-......-.
T Consensus 111 v~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvs--as~D-qtl~Lw~~~~~~~~~~~~ 186 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVS--ASMD-QTLRLWKWNVGENKVKAL 186 (423)
T ss_pred hcccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEE--ecCC-ceEEEEEecCchhhhhHH
Confidence 33446889999999999999976 8866666555555544889999887766644 4455 444444443222211000
Q ss_pred CCCCcceeecccCCCCeEEee--CCCCeEEEeecCCCeEEEEEee-------------------------CceEEEEecc
Q 015220 181 DAGFALFESESLKWPGFVEFD--DVNGKVLTYSAQDSIYKVFDLK-------------------------NYTMLYSISD 233 (411)
Q Consensus 181 ~~~~~LF~~~~l~~PgfvEFD--d~NGkiLt~~~~ds~ykVWdL~-------------------------~Ys~iysLs~ 233 (411)
...-.|-+-||== +.+|-...+..-|.+++||+.. +-+++.+|.+
T Consensus 187 --------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 187 --------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred --------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 0111555555532 4667778888889999999921 1236777777
Q ss_pred C--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecC--ceeeEEEccc
Q 015220 234 K--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRN 309 (411)
Q Consensus 234 ~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~--~~LkI~dL~t 309 (411)
| -|++|-.+|.-.+.....-| -||.|||+||...-+ +--+|.+..+++++..-||+.++ ..|++||=++
T Consensus 259 Ht~~Vs~V~w~d~~v~yS~SwDH---TIk~WDletg~~~~~----~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 259 HTEPVSSVVWSDATVIYSVSWDH---TIKVWDLETGGLKST----LTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccceeeEEEcCCCceEeecccc---eEEEEEeecccceee----eecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 6 78888888755555555555 389999999999888 44569999999999888888854 6899999999
Q ss_pred ceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEc-CCCCEEE
Q 015220 310 FELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYIT-SDQDLII 381 (411)
Q Consensus 310 ~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is-~Dqd~ii 381 (411)
+.---|..++-+|..++..|--+ ..|+|+ -|||+++||.| -.++-++.+| +++-+.+. .++.+|+
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-------~DKvl~vdW~~~~~Iv 404 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-------NDKVLSVDWNEGGLIV 404 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-------CceEEEEeccCCceEE
Confidence 98888999999999999999876 779999 89999999999 3388899999 45666665 5677999
Q ss_pred EEecCCCCCccccCCceEEEee
Q 015220 382 SYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 382 S~~~d~~~~~~~~~~gtI~i~~ 403 (411)
||.+|+ +|.|+.
T Consensus 405 SGGaD~----------~l~i~~ 416 (423)
T KOG0313|consen 405 SGGADN----------KLRIFK 416 (423)
T ss_pred eccCcc----------eEEEec
Confidence 999999 888763
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-09 Score=106.54 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=147.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
+++|.-...++.|.++|.|+-.-..+|.+-+++ ||.+..+| |..=++..-. -=-+.+||.+||+.++. +=|
T Consensus 26 N~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg---Dk~v~vwDV~TGkv~Rr---~rg 99 (307)
T KOG0316|consen 26 NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG---DKAVQVWDVNTGKVDRR---FRG 99 (307)
T ss_pred ccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC---CceEEEEEcccCeeeee---ccc
Confidence 466777777899999999999999999777655 99999999 5554433222 23477999999999999 558
Q ss_pred cCCcceeeeeecceeEEeec--CceeeEEEccc--ceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-Cc
Q 015220 279 RNKKVDFIEQFNEKLLVKQE--NENLQILDVRN--FELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t--~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Ge 351 (411)
|-.+|+.+.--.|--.+.++ +.++++||+++ -|+++ ++......+..+..+ ..-+++ -|+++|.|+.| |.
T Consensus 100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ---ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ---ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGT 176 (307)
T ss_pred ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc---hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecce
Confidence 99999988766666688776 58999999998 46777 444445677777766 445666 89999999999 99
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+....-+| -+|.+-+|+||....-+|-|. |+.+-|-.|||++
T Consensus 177 l~sDy~g~-------pit~vs~s~d~nc~La~~l~s----------tlrLlDk~tGklL 218 (307)
T KOG0316|consen 177 LSSDYFGH-------PITSVSFSKDGNCSLASSLDS----------TLRLLDKETGKLL 218 (307)
T ss_pred eehhhcCC-------cceeEEecCCCCEEEEeeccc----------eeeecccchhHHH
Confidence 87766666 468999999999999999998 9999999999986
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-09 Score=112.57 Aligned_cols=182 Identities=13% Similarity=0.160 Sum_probs=141.3
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE--EEeccC--------ceeEEEEeCCEEEEEEecCCCceee
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDK--------NVQEIKISPGIMLLIFTKASGHVPL 259 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~--------~VqeIkISdG~~Lai~q~t~~~ipi 259 (411)
.+|+|- ..|--|++.+-|++..+||..+.+.. +++..- .-.++..| ..-.-|
T Consensus 280 ~slKWn-------k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts-----------~td~~i 341 (524)
T KOG0273|consen 280 FSLKWN-------KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATS-----------STDGCI 341 (524)
T ss_pred EEEEEc-------CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeec-----------CCCceE
Confidence 467774 35666888889999999999777654 444321 22445555 112235
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEe-------
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY------- 330 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy------- 330 (411)
.|+-|---++.++ +.||..||..|+--+-+.|+.+ .+..||||++..+-... -+..|....+-.-
T Consensus 342 ~V~kv~~~~P~~t---~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~---~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 342 HVCKVGEDRPVKT---FIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH---DLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred EEEEecCCCccee---eecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh---hhhhhccceeeEeecCCCCc
Confidence 7777877888899 5679999999999977776654 88999999998877766 5666665554432
Q ss_pred -----eceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 331 -----ENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 331 -----~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.+-..++- .|+||++||.. |-++.+|.+|+- ++..++-||||..+.||+-|+ .++||+
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-----pVysvafS~~g~ylAsGs~dg----------~V~iws 480 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-----PVYSVAFSPNGRYLASGSLDG----------CVHIWS 480 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-----ceEEEEecCCCcEEEecCCCC----------eeEecc
Confidence 22335555 99999999999 999999999999 999999999999999999998 999999
Q ss_pred ecceeee
Q 015220 404 LMFVTCK 410 (411)
Q Consensus 404 i~tGk~~ 410 (411)
+.|||+.
T Consensus 481 ~~~~~l~ 487 (524)
T KOG0273|consen 481 TKTGKLV 487 (524)
T ss_pred ccchhee
Confidence 9999974
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-09 Score=105.19 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=154.9
Q ss_pred eecccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeC--CEEEEEEecCCCceeeE
Q 015220 188 ESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLK 260 (411)
Q Consensus 188 ~~~~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISd--G~~Lai~q~t~~~ipiK 260 (411)
..+--.|-||+ +|=| |+.|||.+ .|.+.-.||+++.+.+.+..+| +|..+.++| +.-.+...+- -..|
T Consensus 138 ~r~l~gHtgylScC~f~d-D~~ilT~S-GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD---~~ak 212 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DNHILTGS-GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD---KSAK 212 (343)
T ss_pred eeeecCccceeEEEEEcC-CCceEecC-CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccc---ccee
Confidence 34455677886 5666 88888865 4788999999999999999998 999999996 3333333332 3579
Q ss_pred EEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCc---eEEEEeec---
Q 015220 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPS---AFIFLYEN--- 332 (411)
Q Consensus 261 Il~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hps---AfifLy~s--- 332 (411)
|||+-.|....+ +-||..+|+.+.-||++.=++. ++...++|||+...-..+ |-|+. -+..++.|
T Consensus 213 lWD~R~~~c~qt---F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~----ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 213 LWDVRSGQCVQT---FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV----YSHDSIICGITSVAFSKSG 285 (343)
T ss_pred eeeccCcceeEe---ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee----eccCcccCCceeEEEcccc
Confidence 999999999999 5699999999999999997765 778999999999776652 32222 24446655
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.|++.+ .|.++.|||.= ||.+..|.||.. -+.-+-.||||--+.+||=|. +++||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeN-----RvScl~~s~DG~av~TgSWDs----------~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHEN-----RVSCLGVSPDGMAVATGSWDS----------TLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEeeccCC-----eeEEEEECCCCcEEEecchhH----------heeecC
Confidence 788887 99999999987 999999999999 999999999999999999999 999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-09 Score=104.99 Aligned_cols=187 Identities=14% Similarity=0.258 Sum_probs=137.9
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc-cC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-RN 280 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~-h~ 280 (411)
.+||-...+++|++.|||||+.-++-+..... -|-+|-+-|.|-=++.--.+ -.|.||||-+-...+. |.+ .-
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqs--g~irvWDl~~~~c~~~---liPe~~ 167 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQS--GNIRVWDLGENSCTHE---LIPEDD 167 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCC--CcEEEEEccCCccccc---cCCCCC
Confidence 47899999999999999999997766666555 78888888655444433332 3579999988776665 222 22
Q ss_pred CcceeeeeecceeEEee--cCceeeEEEcccceEEE--eeccccCCCc--eEEEEeec--eeEEEE-ecCeEEEEecCCc
Q 015220 281 KKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTE--VSRTEFMTPS--AFIFLYEN--QLFLTF-RNRTVAVWNFRGE 351 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~--v~~T~f~hps--AfifLy~s--qlFlSf-sd~tI~iWn~~Ge 351 (411)
-+|+.+.+.+|+-++.- ...+.-+|+|.++.-.- +|.+.|-.-+ .--|++-. +.++|- +|.|+.|||.++-
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 56888999988875555 44578999999954332 3444442211 22234432 667777 9999999999987
Q ss_pred --eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 352 --LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 352 --l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+-.++++|+.|-=|| +.|.||+.||.|+.|. +.++||+.+||-
T Consensus 248 ~kle~~l~gh~rWvWdc-----~FS~dg~YlvTassd~----------~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDC-----AFSADGEYLVTASSDH----------TARLWDLSAGKE 292 (311)
T ss_pred eeeEEEeecCCceEEee-----eeccCccEEEecCCCC----------ceeecccccCce
Confidence 445899999998888 5799999999999998 999999999984
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-09 Score=109.41 Aligned_cols=256 Identities=16% Similarity=0.133 Sum_probs=185.5
Q ss_pred cceehhhhccccceeeeccccc--EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~--~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~ 182 (411)
+.+-++|.++-. .++..+++ .+|-++ .+-|-|+=|+....-|.+ -+ ++. ++.+=+..+-|-
T Consensus 189 n~laValg~~vy--lW~~~s~~v~~l~~~~---~~~vtSv~ws~~G~~Lav--G~-~~g-------~v~iwD~~~~k~-- 251 (484)
T KOG0305|consen 189 NVLAVALGQSVY--LWSASSGSVTELCSFG---EELVTSVKWSPDGSHLAV--GT-SDG-------TVQIWDVKEQKK-- 251 (484)
T ss_pred CeEEEEecceEE--EEecCCCceEEeEecC---CCceEEEEECCCCCEEEE--ee-cCC-------eEEEEehhhccc--
Confidence 344444443332 34445554 566666 666677777766655554 11 111 122222222110
Q ss_pred CCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEE-eccC--ceeEEEEe-CCEEEEEEecCCCcee
Q 015220 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-ISDK--NVQEIKIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 183 ~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iys-Ls~~--~VqeIkIS-dG~~Lai~q~t~~~ip 258 (411)
-+.+. ..|.+.|-==+=|+.+++++..++.+.++|++.-+.+.+ +.++ +|--.+.| ||.+||.+- +-.-
T Consensus 252 ~~~~~----~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg---nDN~ 324 (484)
T KOG0305|consen 252 TRTLR----GSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG---NDNV 324 (484)
T ss_pred ccccc----CCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC---Cccc
Confidence 00111 115666655556799999999999999999999887665 5544 88888888 999988764 4445
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeeccee-EEeec----CceeeEEEcccceEEEeeccccCCCceEEEEeec-
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQE----NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN- 332 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe----~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s- 332 (411)
+.||++.+-+++.+ +..|+.-|..|.-.|=.- |++.+ +.-|++||..+|+++. +.. +-+-+--|..+
T Consensus 325 ~~Iwd~~~~~p~~~---~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~---~vd-tgsQVcsL~Wsk 397 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFT---FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID---SVD-TGSQVCSLIWSK 397 (484)
T ss_pred eEeccCCCccccEE---EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec---ccc-cCCceeeEEEcC
Confidence 78999988888888 779999999999988777 88875 4579999999999998 443 33444446644
Q ss_pred ---eeEEEE--ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 333 ---QLFLTF--RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 333 ---qlFlSf--sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
++..|. +++-|+||+.- -.+++.|.+|.. -+=.++.||||+.|++|..|. |+++|+++.
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-----RVl~la~SPdg~~i~t~a~DE----------Tlrfw~~f~ 462 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-----RVLYLALSPDGETIVTGAADE----------TLRFWNLFD 462 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-----eeEEEEECCCCCEEEEecccC----------cEEeccccC
Confidence 777777 99999999998 889999999999 888999999999999999999 999999987
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-09 Score=110.54 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=147.6
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec----cC--ceeEEEEe-CCEEEEEEecCCCceeeEEE
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DK--NVQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs----~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl 262 (411)
.+|+.-..+-=|+..+ .++..+.|.+++.|-.+......+.. +| -|+.|.+. +|.+++.+.--. .||||
T Consensus 145 ~~ik~v~~v~~n~~~~-~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~---~lkiW 220 (423)
T KOG0313|consen 145 GPIKSVAWVIKNSSSC-LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT---MLKIW 220 (423)
T ss_pred cceeeeEEEecCCccc-eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc---eeeec
Confidence 4555555566666655 56667889999999999987553333 33 78999966 998877665443 58999
Q ss_pred Eec-------------------------CCcEEeEeeeccccCCcceeeeeec-ceeEEeecCceeeEEEcccceEEEee
Q 015220 263 SIE-------------------------DGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNFELTEVS 316 (411)
Q Consensus 263 ~I~-------------------------tG~~L~t~~~LL~h~K~I~FLE~~~-ekllIKQe~~~LkI~dL~t~e~~~v~ 316 (411)
+-+ +++++.+ |-||..+|..++-.. +-++=.+=+|.||.|||-++..+-
T Consensus 221 s~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt---l~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~-- 295 (423)
T KOG0313|consen 221 SVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT---LEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKS-- 295 (423)
T ss_pred ccCCCccccccccchhhhhhhhhhhcccccCceEE---ecccccceeeEEEcCCCceEeecccceEEEEEeeccccee--
Confidence 932 4455555 889999987776655 444777889999999999999987
Q ss_pred ccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC---Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 317 RTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR---GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 317 ~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~---Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
|++ .+.+|.++... .|++++ +|+-||+||+| |..+. +|.||..|-.-|.-+ ..+.-.++|||-|.
T Consensus 296 -~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws----p~~~~~~~S~S~D~- 368 (423)
T KOG0313|consen 296 -TLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS----PTNEFQLVSGSYDN- 368 (423)
T ss_pred -eee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC----CCCceEEEEEecCC-
Confidence 776 88888888766 889999 99999999999 55666 999999975444332 24556789999998
Q ss_pred CCccccCCceEEEeeeccee
Q 015220 389 DDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~tGk 408 (411)
+++|||..+-|
T Consensus 369 ---------t~klWDvRS~k 379 (423)
T KOG0313|consen 369 ---------TVKLWDVRSTK 379 (423)
T ss_pred ---------eEEEEEeccCC
Confidence 99999998865
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.5e-09 Score=108.69 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=157.0
Q ss_pred EEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcc
Q 015220 207 VLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I 283 (411)
-++.+++|++..+|.=-+|++=.+.-+| .|+.+|.| ||-+.|...--. -+-|+|=.||+.+..+.---+|+--|
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg---ki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG---KIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc---cEEEEcCCCccEEEEecCCCCccccE
Confidence 3566788999999999999998888876 99999999 888766544333 25589999999999966556899999
Q ss_pred eeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCC----ceEEEEeeceeEEEE-ecCeEEEEecC-Cceeee
Q 015220 284 DFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTP----SAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTS 355 (411)
Q Consensus 284 ~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hp----sAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s 355 (411)
..|.=+||.. +-.+.+..+||||+.++++.. |.-|-. ..+=+|..+..++|. -+|+|-+.|+. ++++..
T Consensus 239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~---t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS---TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred EEEEECCCCceEEEecCCceEEEEEeeccceEE---EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe
Confidence 9999998754 677899999999999998887 443333 457788899999999 89999999999 999999
Q ss_pred eccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.||.- ++..+..++|+++|+|||.|- .|+=||+.+|++
T Consensus 316 i~GHnK-----~ITaLtv~~d~~~i~SgsyDG----------~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 316 ISGHNK-----SITALTVSPDGKTIYSGSYDG----------HINSWDSGSGTS 354 (603)
T ss_pred eccccc-----ceeEEEEcCCCCEEEeeccCc----------eEEEEecCCccc
Confidence 999999 999999999999999999995 999999999975
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-08 Score=85.81 Aligned_cols=185 Identities=18% Similarity=0.262 Sum_probs=139.8
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCce-EEEEeccC---ceeEEEE-e-CCE-EEEEEecCCCceeeEEEEecC-CcEE
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDK---NVQEIKI-S-PGI-MLLIFTKASGHVPLKILSIED-GTVL 270 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys-~iysLs~~---~VqeIkI-S-dG~-~Lai~q~t~~~ipiKIl~I~t-G~~L 270 (411)
+|+ .++..+.....++.+.+|++.... .+..+... .+..+.. + ++. +++..... ...+++|++.+ +...
T Consensus 72 ~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 72 AFS-PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL--DGTVKLWDLSTPGKLI 148 (466)
T ss_pred EEC-CCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCC--CccEEEEEecCCCeEE
Confidence 344 445555555589999999999987 67666652 5777777 4 444 33322222 23899999999 8888
Q ss_pred eEeeeccccCCcceeeeeecceeEEeec---CceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEE-EecCe
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLT-FRNRT 342 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlS-fsd~t 342 (411)
.. +..|.+.|.-+..+++...+... +..+++||+.+++... +.-.|...+..+..+ .++++ ..|++
T Consensus 149 ~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 149 RT---LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred EE---EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE---eeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 87 77899999999999988544443 8999999999977777 555577778887766 26777 48999
Q ss_pred EEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 343 VAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 343 I~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|.+|+.+ |+.+. .+.+|.. .. ....++++.++++++.|. ++.+||+.+..
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~d~----------~~~~~~~~~~~ 274 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSD-----SV-VSSFSPDGSLLASGSSDG----------TIRLWDLRSSS 274 (466)
T ss_pred EEEEECCCCcEEeeecCCCCc-----ce-eEeECCCCCEEEEecCCC----------cEEEeeecCCC
Confidence 9999998 88888 6888888 32 228999999999888887 99999998665
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-09 Score=105.44 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=148.6
Q ss_pred ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CC---EEEEEEecCCCceee
Q 015220 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PG---IMLLIFTKASGHVPL 259 (411)
Q Consensus 186 LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG---~~Lai~q~t~~~ipi 259 (411)
||.-. .|-|-+.==.++|+-+++++.|.+++|+||+.=+.+-.|.++ -|-..+.. |- ++|.-+ . ---|
T Consensus 36 lF~~~--aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s--d--DG~i 109 (362)
T KOG0294|consen 36 LFAFS--AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS--D--DGHI 109 (362)
T ss_pred ccccc--ccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec--C--CCcE
Confidence 55432 355666667899999999999999999999999999988877 55555555 22 322211 1 1236
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeecceeE--EeecCceeeEEEcccceEEEeecc-------ccCCCc------
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL--VKQENENLQILDVRNFELTEVSRT-------EFMTPS------ 324 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekll--IKQe~~~LkI~dL~t~e~~~v~~T-------~f~hps------ 324 (411)
.+|+...=+++++ +=+|+..|.+|.++|++-| =-.+++.|+.|||.+|+.--|.+= .| .|+
T Consensus 110 ~iw~~~~W~~~~s---lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w-~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLKS---LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSW-SPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEeee---ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEE-cCCCCEEEE
Confidence 7999999999999 5589999999999998764 345999999999998764332110 11 121
Q ss_pred ---------------------------eEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEE--Ec
Q 015220 325 ---------------------------AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY--IT 374 (411)
Q Consensus 325 ---------------------------AfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~--Is 374 (411)
-..|++.+.++.-+.|..|.+||-+ +.+++.|..|.. -++.+| --
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-----RVK~i~~~~~ 260 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN-----RVKDIASYTN 260 (362)
T ss_pred EeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh-----heeeeEEEec
Confidence 2223445566666699999999999 999999999999 888886 56
Q ss_pred CCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 375 SDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 375 ~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|++.+|++.|.|- .|+|||+.+-
T Consensus 261 ~~~~~lvTaSSDG----------~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDG----------FIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCc----------eEEEEEcccc
Confidence 7899999999995 9999999875
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.5e-10 Score=118.10 Aligned_cols=190 Identities=15% Similarity=0.239 Sum_probs=148.9
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeC-ce-----EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCC--c
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKN-YT-----MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG--T 268 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~-Ys-----~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG--~ 268 (411)
.|.+||+.|-.++-|+++++|+... |. .+-++.+| =|.+|.++ +|--|. -..+-.-+|+|+.+-+ =
T Consensus 32 ~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlI---S~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 32 LDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLI---SASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred ccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceE---EecCCceEEEeecccCcch
Confidence 4788999898999999999999865 33 25555555 67788887 553222 1234457999999987 3
Q ss_pred EEeEeeeccccCCcceeeee-ecceeEEeec--CceeeEEEcccceE--------EEeeccccCCCceEEEEeec---ee
Q 015220 269 VLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQE--NENLQILDVRNFEL--------TEVSRTEFMTPSAFIFLYEN---QL 334 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~-~~ekllIKQe--~~~LkI~dL~t~e~--------~~v~~T~f~hpsAfifLy~s---ql 334 (411)
++.+ +=-|+-=|..|+. -..+-+++++ +++|.+||+.++-- ..+..+.-++...+..||.| .+
T Consensus 109 c~st---ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 109 CMST---IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred hHhh---hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 4444 3456677888887 6666688886 58999999998743 22334444788999999988 46
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++++ -.+-+++||++ +..+..|-||-- |++-+.+++||..++|+|.|. ||++|||---+|+
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLrGHTd-----NVr~ll~~dDGt~~ls~sSDg----------tIrlWdLgqQrCl 248 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLRGHTD-----NVRVLLVNDDGTRLLSASSDG----------TIRLWDLGQQRCL 248 (735)
T ss_pred EEecCcccceEEeccccccceeeeecccc-----ceEEEEEcCCCCeEeecCCCc----------eEEeeecccccee
Confidence 8888 88899999999 999999999999 999999999999999999996 9999999888876
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-09 Score=115.90 Aligned_cols=182 Identities=17% Similarity=0.232 Sum_probs=139.6
Q ss_pred CeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+-+.+++++|-.+|||+|++-.+||+|.+| -|-.+-.- |=++=|..++ -|+||+-++++++.. |-||
T Consensus 63 qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQ-----TIrIWNwqsr~~iav---ltGH 134 (1202)
T KOG0292|consen 63 QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQ-----TIRIWNWQSRKCIAV---LTGH 134 (1202)
T ss_pred CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCC-----eEEEEeccCCceEEE---EecC
Confidence 345578999999999999999999999977 44444332 2222222222 389999999999998 7799
Q ss_pred CCcceeeeeec-cee-EEeecCceeeEEEcccceEEEeecc--------------ccCCCceEEE------------Ee-
Q 015220 280 NKKVDFIEQFN-EKL-LVKQENENLQILDVRNFELTEVSRT--------------EFMTPSAFIF------------LY- 330 (411)
Q Consensus 280 ~K~I~FLE~~~-ekl-lIKQe~~~LkI~dL~t~e~~~v~~T--------------~f~hpsAfif------------Ly- 330 (411)
+-=|=.-.-+| |-+ .=++=+..+++||+.-=....+++. +|+.+.|++= .+
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 88877666666 333 4456789999999865333334444 8988888764 11
Q ss_pred --eceeEEEE-ecCeEEEEecCCc---eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 331 --ENQLFLTF-RNRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 331 --~sqlFlSf-sd~tI~iWn~~Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+..+++|+ .|+-|.+|-.+-. -+-|.-||++ |+..+..-|-||+|+|-+.|+ +|.|||.
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-----nVssvlfhp~q~lIlSnsEDk----------sirVwDm 279 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-----NVSSVLFHPHQDLILSNSEDK----------SIRVWDM 279 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccC-----CcceEEecCccceeEecCCCc----------cEEEEec
Confidence 33789999 7889999998833 5679999999 999999999999999999999 9999998
Q ss_pred cceee
Q 015220 405 MFVTC 409 (411)
Q Consensus 405 ~tGk~ 409 (411)
..-++
T Consensus 280 ~kRt~ 284 (1202)
T KOG0292|consen 280 TKRTS 284 (1202)
T ss_pred ccccc
Confidence 76544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-09 Score=106.14 Aligned_cols=254 Identities=17% Similarity=0.160 Sum_probs=165.3
Q ss_pred hccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecc
Q 015220 112 AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (411)
Q Consensus 112 ~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~ 191 (411)
--||.-.+|..-|+.--|.|--.-+++. =++.-+ ...|. .+.+++ -++=|-.+|=+ . -..+|..-.
T Consensus 125 dmsG~v~v~~~stg~~~~~~~~e~~die-Wl~WHp--~a~il--lAG~~D-GsvWmw~ip~~--~------~~kv~~Gh~ 190 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKLDQEVEDIE-WLKWHP--RAHIL--LAGSTD-GSVWMWQIPSQ--A------LCKVMSGHN 190 (399)
T ss_pred CCCccEEEEEcccCceEEEeecccCceE-EEEecc--cccEE--EeecCC-CcEEEEECCCc--c------eeeEecCCC
Confidence 3566677777777776666653333332 223333 23444 445555 23444444321 0 011222100
Q ss_pred c-CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC---ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 192 L-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 192 l-~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~---~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
. .-- =||= ++||-+.-.-.|++++|||+++.+++..++.. +.-=+.++ +|..+... +.-.++++.+.-+
T Consensus 191 ~~ct~--G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g---~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 191 SPCTC--GEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG---NSEGVACGVNNGS 264 (399)
T ss_pred CCccc--cccc-CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec---cCCccEEEEcccc
Confidence 0 000 0222 33888888888999999999999999999943 23334444 55544333 3456788999999
Q ss_pred CcEEeEeee----c-cccCCcceeeeeecce--e---EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee--cee
Q 015220 267 GTVLKSFNH----L-LHRNKKVDFIEQFNEK--L---LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE--NQL 334 (411)
Q Consensus 267 G~~L~t~~~----L-L~h~K~I~FLE~~~ek--l---lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~--sql 334 (411)
|+++.-++- + -.+...++.+|-.+.. + -+.+=+.+|-|||+.+...+ +.+.|+++++-|-- +..
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R----~~c~he~~V~~l~w~~t~~ 340 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR----HICEHEDGVTKLKWLNTDY 340 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh----eeccCCCceEEEEEcCcch
Confidence 999987661 1 1222334444443332 2 23346789999999998887 67889999886432 456
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
++|. .|++|+.||-| |.++.++.||+- .+--.++|||.+++|+.|-|. +-+|++.
T Consensus 341 l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-----~Il~f~ls~~~~~vvT~s~D~----------~a~VF~v 397 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQLKFTYTGHQM-----GILDFALSPQKRLVVTVSDDN----------TALVFEV 397 (399)
T ss_pred heeeccCceEEeeeccccceEEEEecCch-----heeEEEEcCCCcEEEEecCCC----------eEEEEec
Confidence 6666 99999999999 999999999999 999999999999999999998 8787763
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=111.24 Aligned_cols=205 Identities=19% Similarity=0.186 Sum_probs=170.9
Q ss_pred cceeecccCCCCeEEeeCCCCe------EEEeecCCCeEEEEEeeCceE-EEEeccC-------ceeEEEEe-CCEEEEE
Q 015220 185 ALFESESLKWPGFVEFDDVNGK------VLTYSAQDSIYKVFDLKNYTM-LYSISDK-------NVQEIKIS-PGIMLLI 249 (411)
Q Consensus 185 ~LF~~~~l~~PgfvEFDd~NGk------iLt~~~~ds~ykVWdL~~Ys~-iysLs~~-------~VqeIkIS-dG~~Lai 249 (411)
-+|.++.++-|--+||+-.|.| |++.+..+...+.|++++-+. =+.|... ++..+.+| =|.|..+
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I 465 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI 465 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEE
Confidence 3788899999999999988876 689999999999999999876 4555533 88999999 7888877
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEE
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFI 327 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfi 327 (411)
+.-. --|.++|+|.|-.-++|-.--.|+.+|--++.-+=+.++-+ -..-|+.||..++.+.. ++--..+.-.
T Consensus 466 G~S~---G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~---~l~l~~~~~~ 539 (910)
T KOG1539|consen 466 GYSK---GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK---SLRLGSSITG 539 (910)
T ss_pred eccC---CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee---eeccCCCcce
Confidence 6543 35899999999999997544578899999988887755544 55679999999999776 5555556666
Q ss_pred EEeec--eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 328 FLYEN--QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 328 fLy~s--qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.+|.. .+|... .|-.|++.|-. --.+|-|.||.. .+|....||||..|||.|.|. ||.+||
T Consensus 540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~----------tIr~wD 604 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDS----------TIRTWD 604 (910)
T ss_pred eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCC----------cEEEEe
Confidence 66655 777777 66699999998 779999999999 999999999999999999998 999999
Q ss_pred ecceeee
Q 015220 404 LMFVTCK 410 (411)
Q Consensus 404 i~tGk~~ 410 (411)
|-||+|+
T Consensus 605 lpt~~lI 611 (910)
T KOG1539|consen 605 LPTGTLI 611 (910)
T ss_pred ccCccee
Confidence 9999987
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-08 Score=106.70 Aligned_cols=278 Identities=15% Similarity=0.207 Sum_probs=188.1
Q ss_pred cceEEEeeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhh
Q 015220 96 SKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (411)
Q Consensus 96 S~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i 175 (411)
.|=.+.=..+..+++-+++|-...+|-+|-.+.=-+-+++- =||+--+=-+-+++++ .||| ++.|.....-+
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfiaRknWiv~----GsDD---~~IrVfnynt~ 87 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFIARKNWIVT----GSDD---MQIRVFNYNTG 87 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheeeeccceEEE----ecCC---ceEEEEecccc
Confidence 33444455678899999999999998777665555555443 3455444445567766 6788 88999877666
Q ss_pred hhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC-ceEEEEeccC--ceeEEEEe--CCEEEEEE
Q 015220 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDK--NVQEIKIS--PGIMLLIF 250 (411)
Q Consensus 176 ~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS--dG~~Lai~ 250 (411)
++=+.-+.-+.|=...-+|| +.-.+| ++++|=++|.||..+ ..+-++-.+| -|++|.+- |-...|..
T Consensus 88 ekV~~FeAH~DyIR~iavHP-------t~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHP-------TLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred eeeEEeeccccceeeeeecC-------CCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 55332122222223344444 333444 457899999999988 5566666655 89999988 33333322
Q ss_pred ecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce----eEEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK----LLVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 251 q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek----llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
.----+|||++..-.+-.| |-||.|-|+.+.-.+.+ |+=...++.+||||.+|..++. |+-+|..-+
T Consensus 160 ---sLDrTVKVWslgs~~~nfT---l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---TLeGHt~Nv 230 (794)
T KOG0276|consen 160 ---SLDRTVKVWSLGSPHPNFT---LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---TLEGHTNNV 230 (794)
T ss_pred ---eccccEEEEEcCCCCCcee---eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---Hhhcccccc
Confidence 2234589999999988888 66999999999988765 5667789999999999999999 999999877
Q ss_pred EEEeec---eeEEEE-ecCeEEEEecC-Cceee--eecccccc--CCCCccceEEEcCC-CCEEEEEecCCCCCccccCC
Q 015220 327 IFLYEN---QLFLTF-RNRTVAVWNFR-GELVT--SFEDHLLW--HPDCNTNNIYITSD-QDLIISYCKADSDDPLAEGN 396 (411)
Q Consensus 327 ifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~--s~e~H~~~--~~~c~~n~i~Is~D-qd~iiS~~~d~~~~~~~~~~ 396 (411)
.|++.- -|++|+ .|+|+|||+-. =.+-. ++..-..| +..-..++|++--| |.+.|+-|.+.|. -.|..+
T Consensus 231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~-vsMd~~ 309 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPA-VSMDSN 309 (794)
T ss_pred eEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCc-eeecCC
Confidence 776644 789999 89999999865 11111 22222233 12234567777666 5566777777643 335566
Q ss_pred ceE
Q 015220 397 GKL 399 (411)
Q Consensus 397 gtI 399 (411)
|+|
T Consensus 310 gKI 312 (794)
T KOG0276|consen 310 GKI 312 (794)
T ss_pred ccE
Confidence 755
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.6e-07 Score=85.95 Aligned_cols=271 Identities=12% Similarity=0.120 Sum_probs=155.6
Q ss_pred hccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee-
Q 015220 112 AQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES- 189 (411)
Q Consensus 112 ~~sG~c~af~~~t~~~ic~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~- 189 (411)
.++|--.+|+..++..+-.++. ....-...|.++...+.|.+ +.+.. ..+..-.+ . ..|++. +-.+
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv-~~~~~---~~i~~~~~--~--~~g~l~----~~~~~ 76 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYV-GVRPE---FRVLSYRI--A--DDGALT----FAAES 76 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEE-EECCC---CcEEEEEE--C--CCCceE----Eeeee
Confidence 3456667887754322222222 12234556777775554433 33322 22222222 1 112210 0011
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCc----eEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Y----s~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
....+|.++-||..+..+.+.+..++.+.||++.+. +.+..+.. .....+.++ ||.+|++..-..+ .|.||+
T Consensus 77 ~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~--~v~v~d 154 (330)
T PRK11028 77 PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKED--RIRLFT 154 (330)
T ss_pred cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCC--EEEEEE
Confidence 123479999999666667777777999999999743 34444443 367788889 7888877665555 478899
Q ss_pred ecC-CcEEeEe--eeccccCCcceeeeeecc--eeEEeec-CceeeEEEcc--cceEEEeeccccC------CCceE--E
Q 015220 264 IED-GTVLKSF--NHLLHRNKKVDFIEQFNE--KLLVKQE-NENLQILDVR--NFELTEVSRTEFM------TPSAF--I 327 (411)
Q Consensus 264 I~t-G~~L~t~--~~LL~h~K~I~FLE~~~e--kllIKQe-~~~LkI~dL~--t~e~~~v~~T~f~------hpsAf--i 327 (411)
+.+ |++.... ...........-+.++++ ++++..+ ++.|.+||+. +++...+. +.-. +|.+- +
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ-TLDMMPADFSDTRWAADI 233 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE-EEecCCCcCCCCccceeE
Confidence 987 4432110 001122234566888888 5567766 9999999998 34432211 1111 22221 2
Q ss_pred EEeec--eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 328 FLYEN--QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 328 fLy~s--qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
.+.-+ .+|++- .+++|.+|+.+ |.. -++.+|.... .....+.++|||+.|+..+.. .|+|-+|
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~---------~~~v~v~ 301 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQK---------SHHISVY 301 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEecc--ccCCceEECCCCCEEEEEEcc---------CCcEEEE
Confidence 22222 456665 47899999996 332 3566665532 133468999999999986642 2499999
Q ss_pred ee--cceee
Q 015220 403 LL--MFVTC 409 (411)
Q Consensus 403 ~i--~tGk~ 409 (411)
++ .||++
T Consensus 302 ~~~~~~g~l 310 (330)
T PRK11028 302 EIDGETGLL 310 (330)
T ss_pred EEcCCCCcE
Confidence 77 57765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=108.97 Aligned_cols=190 Identities=17% Similarity=0.193 Sum_probs=146.4
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEe---cCCCceeeEEEEecCCcEEeEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFT---KASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q---~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
-|.|-++.--+|++ .-.+..-+||+.|+++..++. |.++-+.-.-|++=.+ .-..-+.|.|++..|++..++|
T Consensus 18 sVd~HPtePw~la~-LynG~V~IWnyetqtmVksfe---V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 18 SVDFHPTEPWILAA-LYNGDVQIWNYETQTMVKSFE---VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred eeecCCCCceEEEe-eecCeeEEEecccceeeeeee---ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 35566665566654 457889999999999986553 3333333333333221 2235688999999999999996
Q ss_pred eeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEE
Q 015220 274 NHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVW 346 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iW 346 (411)
. .|.-=|..|++||-.= |-.+.+-.||+||-.++=... .|--+|.--+..++.+ ..|+|. =|+||.||
T Consensus 94 e---AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~--qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 94 E---AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE--QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred e---ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee--eEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 6 6888889999998754 667788999999998864444 2667898888888888 789999 79999999
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcCCC--CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq--d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++- ..+.-||++|.- -+|-|--=+-| -.||||+.|. +|||||..|-.|+
T Consensus 169 slgs~~~nfTl~gHek-----GVN~Vdyy~~gdkpylIsgaDD~----------tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 169 SLGSPHPNFTLEGHEK-----GVNCVDYYTGGDKPYLISGADDL----------TIKVWDYQTKSCV 220 (794)
T ss_pred EcCCCCCceeeecccc-----CcceEEeccCCCcceEEecCCCc----------eEEEeecchHHHH
Confidence 998 889999999998 77777544444 4999999999 9999999998875
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=108.88 Aligned_cols=190 Identities=14% Similarity=0.199 Sum_probs=150.8
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
-+|=-+..+++.+++.+.+|||+-.+.++|++++..-+...++-||--..+.-..+ --+-|+++-.+.++-+ .-.
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~--Gel~vfdlaS~~l~Et---i~A 452 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKN--GELQVFDLASASLVET---IRA 452 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccC--CceEEEEeehhhhhhh---hhc
Confidence 35556677888999999999999999999999999999999988554333322222 2467788888777777 336
Q ss_pred cCCcceeeeeeccee--EEeecCceeeEEEcccceE-----EE---e--eccccCCCceEEEEeec--eeEEEE--ecCe
Q 015220 279 RNKKVDFIEQFNEKL--LVKQENENLQILDVRNFEL-----TE---V--SRTEFMTPSAFIFLYEN--QLFLTF--RNRT 342 (411)
Q Consensus 279 h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~-----~~---v--~~T~f~hpsAfifLy~s--qlFlSf--sd~t 342 (411)
|.-.|--|...+|+- +-.+.++.+|+||..--.- .+ + .+|+ .-+.-+.++..| +-||.. =|+|
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCe
Confidence 777788888888765 8889999999999854221 11 0 0222 357788999998 555555 8999
Q ss_pred EEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 343 I~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.||-++ -...-||=||.+ -+-.+-||||..+|+.||+|+ ++|||-+-.|.|
T Consensus 532 VkVyflDtlKFflsLYGHkL-----PV~smDIS~DSklivTgSADK----------nVKiWGLdFGDC 584 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKL-----PVLSMDISPDSKLIVTGSADK----------NVKIWGLDFGDC 584 (888)
T ss_pred EEEEEecceeeeeeeccccc-----ceeEEeccCCcCeEEeccCCC----------ceEEeccccchh
Confidence 9999999 888899999999 899999999999999999999 999999999988
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-09 Score=111.03 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=145.9
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
++|++-++--|...+.|.++-||.+-+-.++|.|.+|+=.-..+| ++.| +.+. = -.-+|||-+ |++..+
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~-iSgS-W--D~TakvW~~--~~l~~~-- 135 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTL-ISGS-W--DSTAKVWRI--GELVYS-- 135 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCce-Eecc-c--ccceEEecc--hhhhcc--
Confidence 566664444466678899999999999999999999855555555 5552 2221 1 235789976 566666
Q ss_pred eccccCCcceeeeeecceeEE-eecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCC
Q 015220 275 HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekllI-KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~G 350 (411)
+-||+..|..+..++|..++ .+.+..||+|+= ++..+ |.-+|-.-+=.|+.- .-|+|- -|+.|+.|++.|
T Consensus 136 -l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~---tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 136 -LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLK---TFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG 209 (745)
T ss_pred -cCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhh---hhccchhheeeeEEecCCCeEeecCCceEEEEeccC
Confidence 88999999999999999854 679999999986 66666 888999999888865 358888 788999999999
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|-+..+.||.. .+.++..+.++++|+|...|. |+.||+..
T Consensus 210 e~l~~~~ghtn-----~vYsis~~~~~~~Ivs~gEDr----------tlriW~~~ 249 (745)
T KOG0301|consen 210 EVLLEMHGHTN-----FVYSISMALSDGLIVSTGEDR----------TLRIWKKD 249 (745)
T ss_pred ceeeeeeccce-----EEEEEEecCCCCeEEEecCCc----------eEEEeecC
Confidence 99999999999 899999999999999999998 99999875
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=105.47 Aligned_cols=186 Identities=19% Similarity=0.227 Sum_probs=150.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
.+|+-|+++.+.+-.+|||+++=.-|+++..+ -|.+++.+ |+.||+...- -.=+|+|++.|+.+..+ +.+
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD---d~v~k~~d~s~a~v~~~---l~~ 151 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD---DKVVKYWDLSTAYVQAE---LSG 151 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC---CceEEEEEcCCcEEEEE---ecC
Confidence 47999999999999999998886667777766 89999999 7887766543 35689999999998666 899
Q ss_pred cCCcceeeeeeccee-EEeec--CceeeEEEcccceEEEeeccccCCC-ceEEEEeeceeEEEEecCeEEEEecC--Cce
Q 015220 279 RNKKVDFIEQFNEKL-LVKQE--NENLQILDVRNFELTEVSRTEFMTP-SAFIFLYENQLFLTFRNRTVAVWNFR--GEL 352 (411)
Q Consensus 279 h~K~I~FLE~~~ekl-lIKQe--~~~LkI~dL~t~e~~~v~~T~f~hp-sAfifLy~sqlFlSfsd~tI~iWn~~--Gel 352 (411)
|.-=|....+++-.= ++-++ ++++++||.++.....+.-. =++| +-++||---++++|-.-+.|+|||+- |-+
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999999999988743 66654 69999999999743332111 2344 44556666699999999999999999 568
Q ss_pred eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 353 ~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++.+..|.- .+..+...+|+.-|+||+=|. .+|++|+.+=|++
T Consensus 231 l~~~~~H~K-----tVTcL~l~s~~~rLlS~sLD~----------~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 231 LTSMFNHNK-----TVTCLRLASDSTRLLSGSLDR----------HVKVFDTTNYKVV 273 (487)
T ss_pred hhhhhcccc-----eEEEEEeecCCceEeeccccc----------ceEEEEccceEEE
Confidence 888888999 899999999999999999998 9999997766653
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.1e-08 Score=99.91 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=136.1
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
-.||..+.+++.|+++++||+++.+.++....+ -|-.+-.+ +-+|+...+.. =-+||||+-+-+.++++.
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD---~t~kl~D~R~k~~~~t~~--- 172 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD---GTLKLWDIRKKEAIKTFE--- 172 (338)
T ss_pred ccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC---ceEEEEeecccchhhccc---
Confidence 368899999999999999999999999998876 44444455 44444443332 247999999877777642
Q ss_pred ccCCccee--eeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC--
Q 015220 278 HRNKKVDF--IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-- 349 (411)
Q Consensus 278 ~h~K~I~F--LE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-- 349 (411)
-+-++-. ..+..++.+..-=++-||+||+++++..- |+-+|..-++-+..+ ...+|- .|+++++|+.+
T Consensus 173 -~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 173 -NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred -cceeEEEEEecccccceeeccccCceeeeccccCcceE---EeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 1111111 23445555555567889999999999988 888999999999877 445666 99999999998
Q ss_pred --Cce-eeeeccccccCCCCccc--eEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 350 --GEL-VTSFEDHLLWHPDCNTN--NIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 350 --Gel-~~s~e~H~~~~~~c~~n--~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+++ |.-|++|.. +=+.| ...=||++..|-.||.|+ .+-+||-.+-.+
T Consensus 249 ~p~~R~v~if~g~~h---nfeknlL~cswsp~~~~i~ags~dr----------~vyvwd~~~r~~ 300 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIH---NFEKNLLKCSWSPNGTKITAGSADR----------FVYVWDTTSRRI 300 (338)
T ss_pred CCCCceEEEeecchh---hhhhhcceeeccCCCCccccccccc----------eEEEeecccccE
Confidence 676 667777765 12222 346789999999999999 888898766443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=103.94 Aligned_cols=254 Identities=15% Similarity=0.158 Sum_probs=185.7
Q ss_pred ehhhhccccceeeecccccEEE--EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 015220 108 VFALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (411)
Q Consensus 108 i~~L~~sG~c~af~~~t~~~ic--~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 185 (411)
++.-++||- |..++|...= +|+-.+|..||++-+..+...+|. .|+.-.+|----+..-++.=+
T Consensus 111 Lltgs~SGE---FtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS-----gD~gG~iKyWqpnmnnVk~~~------ 176 (464)
T KOG0284|consen 111 LLTGSQSGE---FTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMIS-----GDKGGMIKYWQPNMNNVKIIQ------ 176 (464)
T ss_pred eEeeccccc---EEEecCceeeHHHHhhhhcccceeEEEccCCCEEEE-----cCCCceEEecccchhhhHHhh------
Confidence 344456665 4444443222 678899999999999999999987 344344443332222221100
Q ss_pred ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEE
Q 015220 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 186 LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~ 263 (411)
-=.++.++-=. |-. |.-..+.+.+|+++||||...+++=..|+++ +|..+.--|.+=|+.+-...+ ++|+||
T Consensus 177 ahh~eaIRdla---fSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn--lVKlWD 250 (464)
T KOG0284|consen 177 AHHAEAIRDLA---FSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN--LVKLWD 250 (464)
T ss_pred Hhhhhhhheec---cCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc--eeEeec
Confidence 00124444333 333 6667777899999999999999999999988 898888887766666655555 999999
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeec--ceeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFL 336 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFl 336 (411)
=.+|++|.| |.+|+.-|=-++-.+ ..|+-.++++.+|++|+++ .|.+ +.-+|...+..+.-. .||.
T Consensus 251 prSg~cl~t---lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~----~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 251 PRSGSCLAT---LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF----TYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred CCCcchhhh---hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH----Hhhcchhhheeecccccccccee
Confidence 999999999 889988876666544 4567778999999999995 5555 667789999998654 7898
Q ss_pred EE-ecCeEEEEecCC-ceeeee-ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 337 TF-RNRTVAVWNFRG-ELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 337 Sf-sd~tI~iWn~~G-el~~s~-e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
|+ .|+.|-.|...+ +++-.. ..|.. .+-++.--|=|-++.+|++|+ |+++|.
T Consensus 324 sgg~Dgsvvh~~v~~~~p~~~i~~AHd~-----~iwsl~~hPlGhil~tgsnd~----------t~rfw~ 378 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPLGEIPPAHDG-----EIWSLAYHPLGHILATGSNDR----------TVRFWT 378 (464)
T ss_pred eccCCCceEEEeccccccccCCCccccc-----ceeeeeccccceeEeecCCCc----------ceeeec
Confidence 88 999999999983 344433 35555 888999999999999999999 888774
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-09 Score=108.03 Aligned_cols=183 Identities=14% Similarity=0.147 Sum_probs=141.5
Q ss_pred eCCCCeEEEeecCCCeEEEEEeeCc--eEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 201 DDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 201 Dd~NGkiLt~~~~ds~ykVWdL~~Y--s~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
=-+.||-|+..++.+.+..|+..+. +.|.+--|.-|..++.| +|+.++.++. -..||+|...---+... --
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmnnVk~~---~a 177 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMNNVKII---QA 177 (464)
T ss_pred EcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchhhhHHh---hH
Confidence 3578999999999999999999664 35555556699999999 8888776654 47899998764333332 22
Q ss_pred ccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEe---eceeEEEE-ecCeEEEEecC-C
Q 015220 278 HRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY---ENQLFLTF-RNRTVAVWNFR-G 350 (411)
Q Consensus 278 ~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy---~sqlFlSf-sd~tI~iWn~~-G 350 (411)
||.-.|.-++.+ .+|-+=.++++.|+|||.+..+.-.|- -+|-.-+-+++ +..+.+|| .|++|.+||++ |
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL---~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL---RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee---ccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 444566666666 345678899999999999886554322 33444444554 55788888 89999999999 9
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+-++|+-+|.. .+-.+-.++++-+|.++|+|. +++|+||.|=
T Consensus 255 ~cl~tlh~HKn-----tVl~~~f~~n~N~Llt~skD~----------~~kv~DiR~m 296 (464)
T KOG0284|consen 255 SCLATLHGHKN-----TVLAVKFNPNGNWLLTGSKDQ----------SCKVFDIRTM 296 (464)
T ss_pred chhhhhhhccc-----eEEEEEEcCCCCeeEEccCCc----------eEEEEehhHh
Confidence 99999999999 777888999999999999999 9999999853
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-08 Score=105.74 Aligned_cols=216 Identities=15% Similarity=0.172 Sum_probs=158.0
Q ss_pred CceeeeEeeehhhhhhCCCCCCCcceeecc---cC-C---CCeEEeeCC-------------------CCeEEEeecCCC
Q 015220 162 FSSLRCRSTRIEYIRRGKPDAGFALFESES---LK-W---PGFVEFDDV-------------------NGKVLTYSAQDS 215 (411)
Q Consensus 162 ~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~---l~-~---PgfvEFDd~-------------------NGkiLt~~~~ds 215 (411)
+..-+|..+++-....+....++.||+..+ |+ | -+.-||-++ ||+.|++++.|.
T Consensus 16 ~e~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 16 NEKQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hhhhccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 344677788877777777767778888632 11 1 122233233 789999999999
Q ss_pred eEEEEEeeCc--eEEEEeccC--ceeEEEE-eCCEEEEEEecCCCceeeEEEEecCC--cEEeEee-----ecc-ccCCc
Q 015220 216 IYKVFDLKNY--TMLYSISDK--NVQEIKI-SPGIMLLIFTKASGHVPLKILSIEDG--TVLKSFN-----HLL-HRNKK 282 (411)
Q Consensus 216 ~ykVWdL~~Y--s~iysLs~~--~VqeIkI-SdG~~Lai~q~t~~~ipiKIl~I~tG--~~L~t~~-----~LL-~h~K~ 282 (411)
|+|||+-.-. -++-+|-.| =|+-+.+ -....|+.+-+=.. -|+||+|.+| +++++|+ .+- |++-+
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~--~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR--KIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCc--cEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 9999998776 566666644 5676666 23333333333222 4799999999 7888777 344 89999
Q ss_pred ceeeeeecceeEEeecC--ceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeee
Q 015220 283 VDFIEQFNEKLLVKQEN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTS 355 (411)
Q Consensus 283 I~FLE~~~ekllIKQe~--~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s 355 (411)
|+.++.-+-+-+|.++| .-|++||.++++.+- -+-+|..-+=.|-.+ +-.||. ||+||++||+. --=++|
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence 99999998888777765 459999999988776 455899999888877 556777 99999999999 445568
Q ss_pred eccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+.-|.- -+=+++.+|+=+.+.||..|.
T Consensus 251 ~~vH~e-----~VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 251 YIVHKE-----GVWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred EEeccC-----ceEEEeeCCCcceEEecCCCC
Confidence 888876 466667778889999998886
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-08 Score=102.26 Aligned_cols=228 Identities=14% Similarity=0.138 Sum_probs=165.0
Q ss_pred CCceeeeEeeehhhhhhCCCCCCCccee----e-----cccCCCCeEE--eeCCCCeEEEeecCCCeEEEEEeeCceEEE
Q 015220 161 NFSSLRCRSTRIEYIRRGKPDAGFALFE----S-----ESLKWPGFVE--FDDVNGKVLTYSAQDSIYKVFDLKNYTMLY 229 (411)
Q Consensus 161 ~~s~L~cr~~~~~~i~~gk~~~~~~LF~----~-----~~l~~PgfvE--FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iy 229 (411)
.+..=-|.++.-+|+..+.+... .|+- . -+.+=||=|- =++++|.-|+.+.-.+.+-+|.|.+..+|+
T Consensus 39 ~a~~~sl~~l~~~yllsaq~~rp-~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~ 117 (476)
T KOG0646|consen 39 LAQAASLTALNNEYLLSAQLKRP-LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN 117 (476)
T ss_pred cccchhhhhhchhheeeecccCc-cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH
Confidence 44444445555566665554322 1111 1 2344465553 478899999988788889999999999999
Q ss_pred EeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec-------CCcEEeEeeeccccCCcceeeeeecc----eeEE
Q 015220 230 SISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-------DGTVLKSFNHLLHRNKKVDFIEQFNE----KLLV 295 (411)
Q Consensus 230 sLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-------tG~~L~t~~~LL~h~K~I~FLE~~~e----kllI 295 (411)
.++.| .|.-+++| ||.++.++..-. -+.+|.+- |+ -.+.+.++-+|.-+|-=|++.++ +++=
T Consensus 118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg---~V~vW~l~~lv~a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSDDGSHIITGSKDG---AVLVWLLTDLVSADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYT 193 (476)
T ss_pred HHHhhccceeEEEEeCCCcEEEecCCCc---cEEEEEEEeecccccCC-CccceeeeccCcceeEEEEecCCCccceEEE
Confidence 99888 89999999 888877765443 45667664 22 23333346689999999998777 7789
Q ss_pred eecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEEecCeEEEEe-----------------cCCceee
Q 015220 296 KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTFRNRTVAVWN-----------------FRGELVT 354 (411)
Q Consensus 296 KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSfsd~tI~iWn-----------------~~Gel~~ 354 (411)
.++++.+|+|||-.|.+.. |. -.|++..+++.. ..|+=-++|.|-+-+ +.|+-..
T Consensus 194 aS~D~t~k~wdlS~g~LLl---ti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 194 ASEDRTIKLWDLSLGVLLL---TI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred ecCCceEEEEEeccceeeE---EE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 9999999999999998885 33 367777776654 333333777665544 4455677
Q ss_pred eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|.||.. .-++..++|+-||-+|+||++|. ++-|||+.+-.|+
T Consensus 270 ~~~Gh~~---~~~ITcLais~DgtlLlSGd~dg----------~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 270 VLVGHEN---ESAITCLAISTDGTLLLSGDEDG----------KVCVWDIYSKQCI 312 (476)
T ss_pred eeccccC---CcceeEEEEecCccEEEeeCCCC----------CEEEEecchHHHH
Confidence 8999987 24788899999999999999996 9999999887765
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-09 Score=115.27 Aligned_cols=184 Identities=14% Similarity=0.207 Sum_probs=142.3
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCC
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K 281 (411)
.+|.++-++.+.....|...---.+-+++.+ -|..++++....|+-.-.+.. -||+|||+.++++++ |.||..
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsasg--tiK~wDleeAk~vrt---Ltgh~~ 113 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASG--TIKVWDLEEAKIVRT---LTGHLL 113 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCC--ceeeeehhhhhhhhh---hhcccc
Confidence 3455665655555555555444444455544 788888884444433322222 589999999999999 999999
Q ss_pred cceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceee
Q 015220 282 KVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVT 354 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~ 354 (411)
++--+.-++-+-+.++ -+-+++|||.+..-+.. +..+|+..+-.+..+ ....++ .|.+++|||+. |++..
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~---~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ 190 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH---TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK 190 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhccCcee---eecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc
Confidence 9988887777778855 46789999999777777 888899999998877 567777 77999999998 99999
Q ss_pred eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|+.|.. .+..+-.-|-.=++-+|+.|+ |++.||++|=+++
T Consensus 191 ef~~~e~-----~v~sle~hp~e~Lla~Gs~d~----------tv~f~dletfe~I 231 (825)
T KOG0267|consen 191 EFKSHEG-----KVQSLEFHPLEVLLAPGSSDR----------TVRFWDLETFEVI 231 (825)
T ss_pred ccccccc-----cccccccCchhhhhccCCCCc----------eeeeeccceeEEe
Confidence 9999987 777776777778999999999 9999999986654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-07 Score=98.41 Aligned_cols=173 Identities=13% Similarity=0.161 Sum_probs=137.3
Q ss_pred CeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCC-cEE
Q 015220 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDG-TVL 270 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG-~~L 270 (411)
-++-|..-++.+|+++.+|+..|+||+.+-..++.|+++ -|-...++ +++|++++.=-+. |++||+-+- ...
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~---vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK---VRLWDTRSLTSRV 190 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce---EEEEEeccCCcee
Confidence 378899999999999999999999999996668899977 68888888 6688888765553 899999877 777
Q ss_pred eEeeeccccCCcceeeeeecceeEEee-cCceeeEEEcccceEEEeeccccC-CCceEEEEeec---eeEEEE-ecCeEE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFM-TPSAFIFLYEN---QLFLTF-RNRTVA 344 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~-hpsAfifLy~s---qlFlSf-sd~tI~ 344 (411)
.+ |-|--||+-+--.+++.+|++ +|+.+|+|||-+|-... |.++ |-.++.||... +-++|+ =|+.++
T Consensus 191 ~e----lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll---~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK 263 (487)
T KOG0310|consen 191 VE----LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL---TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK 263 (487)
T ss_pred EE----ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh---hhhhcccceEEEEEeecCCceEeecccccceE
Confidence 77 456789998888888555555 88999999999877666 6666 99999998754 567777 899999
Q ss_pred EEecC-Cceee--eeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 345 VWNFR-GELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 345 iWn~~-Gel~~--s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
|+|.. =..+- ++-+- +=++++|||.+.++-|=.+
T Consensus 264 Vfd~t~~Kvv~s~~~~~p--------vLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 264 VFDTTNYKVVHSWKYPGP--------VLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred EEEccceEEEEeeecccc--------eeeEEecCCCceEEEeccc
Confidence 99944 33333 33333 4489999999999988544
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-09 Score=108.64 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=134.0
Q ss_pred eeCceEEEEeccC--ceeEEEEeC--CEEEEEEecCCCceeeEEEEecC-CcEEeEeeeccccCCcceeeeeeccee--E
Q 015220 222 LKNYTMLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKL--L 294 (411)
Q Consensus 222 L~~Ys~iysLs~~--~VqeIkISd--G~~Lai~q~t~~~ipiKIl~I~t-G~~L~t~~~LL~h~K~I~FLE~~~ekl--l 294 (411)
+-+-+++.+++++ -|..+++.+ |++||. -... -=||||++=+ |.++.| .+||+|+|.-+...+++. |
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS-~gmD--~~vklW~vy~~~~~lrt---f~gH~k~Vrd~~~s~~g~~fL 274 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLS-GGMD--GLVKLWNVYDDRRCLRT---FKGHRKPVRDASFNNCGTSFL 274 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEe-cCCC--ceEEEEEEecCcceehh---hhcchhhhhhhhccccCCeee
Confidence 3355678888887 899999995 554443 3333 3478999987 999999 789999999999999988 6
Q ss_pred EeecCceeeEEEcccceEEE------eeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCC
Q 015220 295 VKQENENLQILDVRNFELTE------VSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (411)
Q Consensus 295 IKQe~~~LkI~dL~t~e~~~------v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c 366 (411)
=.+=+-.||+||+-||+... ++..+.+||.- .++||++ +|++|+-||.| |++|.....|++
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~------~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg----- 343 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN------QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG----- 343 (503)
T ss_pred eeecceeeeeeccccceEEEEEecCCCceeeecCCCC------CcEEEEecCCCcEEEEeccchHHHHHHHhhhh-----
Confidence 66778999999999998765 55566666665 6899999 99999999999 999999999999
Q ss_pred ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
-+++|-.=++|.--||.|.|+ ++.||+..++-
T Consensus 344 ~i~~i~F~~~g~rFissSDdk----------s~riWe~~~~v 375 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDK----------SVRIWENRIPV 375 (503)
T ss_pred heeeeEEccCCceEeeeccCc----------cEEEEEcCCCc
Confidence 889998899999999999998 99999987763
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-07 Score=99.72 Aligned_cols=195 Identities=7% Similarity=0.048 Sum_probs=157.6
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEE----EeccCceeEEEEe-CCEEEE-EEecCCCceeeEEEEecC
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY----SISDKNVQEIKIS-PGIMLL-IFTKASGHVPLKILSIED 266 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iy----sLs~~~VqeIkIS-dG~~La-i~q~t~~~ipiKIl~I~t 266 (411)
.||--|-==-|+|.-++++-..+.+||||-.+-+.+. +.=.-.|.+|.-+ ||+=++ +.+.... .-.++-..+
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer--fg~~F~~DS 136 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER--FGHVFLWDS 136 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc--eeEEEEecC
Confidence 3444444445789989998899999999988865442 2223477888888 776554 4555444 888999999
Q ss_pred CcEEeEeeeccccCCcceeeeeeccee---EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-e
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFNEKL---LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-R 339 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~ekl---lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-s 339 (411)
|.-+.+ +-||++.|+...+-+..= .--++++.+-++ .|-+++...|.-.|..-+.++-++ +.|+|. +
T Consensus 137 G~SvGe---i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff---eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs 210 (603)
T KOG0318|consen 137 GNSVGE---ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF---EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS 210 (603)
T ss_pred CCccce---eeccceeEeeeeccCCCceEEEeccCCCeEEEe---eCCCeeeeecccccccceeeEEECCCCCeEEEecC
Confidence 999999 779999999888766643 334566666555 488888888999999988888888 889998 9
Q ss_pred cCeEEEEecC-Cceeeeec---cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR-GELVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e---~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|++|-+||=. ||.|.-|+ .|.+ .+-.+.-|||+.-+.+.|+|+ |+||||..|++|+
T Consensus 211 Dgki~iyDGktge~vg~l~~~~aHkG-----sIfalsWsPDs~~~~T~SaDk----------t~KIWdVs~~slv 270 (603)
T KOG0318|consen 211 DGKIYIYDGKTGEKVGELEDSDAHKG-----SIFALSWSPDSTQFLTVSADK----------TIKIWDVSTNSLV 270 (603)
T ss_pred CccEEEEcCCCccEEEEecCCCCccc-----cEEEEEECCCCceEEEecCCc----------eEEEEEeeccceE
Confidence 9999999999 99999999 8999 899999999999999999999 9999999999985
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-08 Score=108.74 Aligned_cols=194 Identities=18% Similarity=0.208 Sum_probs=153.7
Q ss_pred eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEe
Q 015220 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 187 F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I 264 (411)
||+.+-+=-| +-|-+..=-||+ +.+.+.+..||++=.++|-.--+| -|--|-.-+.|=|.++-+-. .-||||+.
T Consensus 5 fEskSsRvKg-lsFHP~rPwILt-slHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDD--ykIkVWnY 80 (1202)
T KOG0292|consen 5 FESKSSRVKG-LSFHPKRPWILT-SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDD--YKIKVWNY 80 (1202)
T ss_pred hhcccccccc-eecCCCCCEEEE-eecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCc--cEEEEEec
Confidence 5554444322 456666666776 467899999999999999666655 67777777777777766544 55899999
Q ss_pred cCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee---ceeEEEE-
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE---NQLFLTF- 338 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~---sqlFlSf- 338 (411)
.+-+++-| |+||--=|..+.-|+||= +=++.+..|+|||.+++.++. ++.+|---+.|... -.+-+|.
T Consensus 81 k~rrclft---L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia---vltGHnHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 81 KTRRCLFT---LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA---VLTGHNHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred ccceehhh---hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE---EEecCceEEEeeccCCccceEEEec
Confidence 99999999 999999999999999996 667899999999999999999 88889888887553 3677788
Q ss_pred ecCeEEEEecCCceee------------------------------eeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 339 RNRTVAVWNFRGELVT------------------------------SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 339 sd~tI~iWn~~Gel~~------------------------------s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
=|.||||||..|=... -||||-- -+|-++.-|+=-+|+||+.|+
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-----GVNwaAfhpTlpliVSG~DDR- 228 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-----GVNWAAFHPTLPLIVSGADDR- 228 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-----ccceEEecCCcceEEecCCcc-
Confidence 7999999997653222 3455555 678889999999999999999
Q ss_pred CCccccCCceEEEeeec
Q 015220 389 DDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~ 405 (411)
-||+|-..
T Consensus 229 ---------qVKlWrmn 236 (1202)
T KOG0292|consen 229 ---------QVKLWRMN 236 (1202)
T ss_pred ---------eeeEEEec
Confidence 89999654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-08 Score=106.88 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=134.2
Q ss_pred CeEEEeecCCCeEEEEEeeCceEE--EEec-cCceeEEEE----eCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 205 GKVLTYSAQDSIYKVFDLKNYTML--YSIS-DKNVQEIKI----SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~Ys~i--ysLs-~~~VqeIkI----SdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
+.-+++.+.|+++|||+-+.-+-+ -.+. ++.+-..++ |++--|.++..-+... ||.+.++.++.+ |-
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~---v~~~~~~~P~~~---Lk 98 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII---VFKLSQAEPLYT---LK 98 (745)
T ss_pred CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE---EEecCCCCchhh---hh
Confidence 334677777999999998764433 2333 234444433 3343344444444444 999999999999 88
Q ss_pred ccCCcceeeeeecceeEEe-ecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCCcee
Q 015220 278 HRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRGELV 353 (411)
Q Consensus 278 ~h~K~I~FLE~~~ekllIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~Gel~ 353 (411)
||+..|=.+.+.++..+|- +=+.+.++|= .++... ++-+|++++-++..= +.|+|+ .|++|++|+= |.++
T Consensus 99 gH~snVC~ls~~~~~~~iSgSWD~TakvW~--~~~l~~---~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~-~~~l 172 (745)
T KOG0301|consen 99 GHKSNVCSLSIGEDGTLISGSWDSTAKVWR--IGELVY---SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG-GTLL 172 (745)
T ss_pred ccccceeeeecCCcCceEecccccceEEec--chhhhc---ccCCcchheeeeeecCCCcEEeccCcceeeeccC-Cchh
Confidence 9999999999999999444 4578999994 345554 688899988776632 699999 9999999987 9999
Q ss_pred eeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 354 ~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+||.+|-. .+..+++=+|.-+ +|+++|- .|+.||+ +|+|+
T Consensus 173 ~tf~gHtD-----~VRgL~vl~~~~f-lScsNDg----------~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 173 KTFSGHTD-----CVRGLAVLDDSHF-LSCSNDG----------SIRLWDL-DGEVL 212 (745)
T ss_pred hhhccchh-----heeeeEEecCCCe-EeecCCc----------eEEEEec-cCcee
Confidence 99999998 7888998888765 5888885 9999999 99886
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-07 Score=93.75 Aligned_cols=259 Identities=14% Similarity=0.157 Sum_probs=183.3
Q ss_pred EEEeeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhC
Q 015220 99 IEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (411)
Q Consensus 99 ~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~g 178 (411)
..|..+.+.|+..-.---.-.||..+|+.+-.+ +++.-.|-++-||+.++.+|+.|+-.-.+ .-+.+..
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~~~~v~~aSad~~i~-----vws~~~~----- 293 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKDLDTVITASADEIIR-----VWSVPLS----- 293 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccchhheeecCCcceEE-----eeccccc-----
Confidence 344555566665555555567888888876655 56666789999999999999987543111 1111110
Q ss_pred CCCCCCcceeecccCCCCeEEe--eCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC----ceeEEEEe-CCEEEEEEe
Q 015220 179 KPDAGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS-PGIMLLIFT 251 (411)
Q Consensus 179 k~~~~~~LF~~~~l~~PgfvEF--Dd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~----~VqeIkIS-dG~~Lai~q 251 (411)
..| +.+..|-+=|-| -.++|+-|++...|++|-+-|+.+.+.|-..+++ ++....+- ||.++.++.
T Consensus 294 ----s~~---~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 294 ----SEP---TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred ----cCc---cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 000 011111111221 3578999999999999999999999999888886 56666776 998877765
Q ss_pred cCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEE-eeccccCCCceEEE
Q 015220 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIF 328 (411)
Q Consensus 252 ~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfif 328 (411)
+. .-+|||++..+..... +=||..||-.|.-...+- -...++..+++|||++-+-++ +....+ .+-.=+.
T Consensus 367 ~d---~~vkiwdlks~~~~a~---Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~-~~v~s~~ 439 (506)
T KOG0289|consen 367 PD---GVVKIWDLKSQTNVAK---FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK-KEVNSLS 439 (506)
T ss_pred CC---ceEEEEEcCCcccccc---CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc-ccceeEE
Confidence 43 5699999999997776 447999999888776554 445577779999999987666 222222 1344455
Q ss_pred EeeceeEEEEecCeEEEEecC-----CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 329 LYENQLFLTFRNRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 329 Ly~sqlFlSfsd~tI~iWn~~-----Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+..+..||.....++.||-+. =..+..|.+|.+ -.+.|...++-++++|+|.|+
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg-----~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG-----LSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred EcCCCCeEEeecceeEEEEEecccccceeeehhhhccc-----ccceeeecccceEEeeccchh
Confidence 666777777778888888887 126678999997 788999999999999999998
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-08 Score=101.89 Aligned_cols=177 Identities=16% Similarity=0.103 Sum_probs=140.5
Q ss_pred ecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeee
Q 015220 211 SAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (411)
Q Consensus 211 ~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE 287 (411)
+.+..+..||||+|.+.+.+-..- ..+.-... ++-+||..|-+.+ .|.+|.+.--...+. ..--.-||..|.
T Consensus 14 S~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp--~l~vw~i~k~~~~~q---~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 14 SFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRP--LLHVWEILKKDQVVQ---YIVLPGPVHALA 88 (476)
T ss_pred CCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCc--cccccccCchhhhhh---hcccccceeeee
Confidence 445667999999999988777755 33333333 6678888888888 677888875555441 111124688999
Q ss_pred eeccee-EEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC----------Cc
Q 015220 288 QFNEKL-LVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR----------GE 351 (411)
Q Consensus 288 ~~~ekl-lIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~----------Ge 351 (411)
-+|++. +++. +..+|-||-|.+|++.. +.-.|=..+.+|-.+ ..|+|+ .|+-|.+|.+- -.
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 999998 6677 89999999999999998 667788999998877 678888 99999999862 34
Q ss_pred eeeeeccccccCCCCccceEEEcCCC--CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dq--d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++.|.+|-+ .+..++|++-| -.+++.|.|. ||++||+.+|+++
T Consensus 166 p~~~f~~Htl-----sITDl~ig~Gg~~~rl~TaS~D~----------t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 166 PLHIFSDHTL-----SITDLQIGSGGTNARLYTASEDR----------TIKLWDLSLGVLL 211 (476)
T ss_pred ceeeeccCcc-----eeEEEEecCCCccceEEEecCCc----------eEEEEEeccceee
Confidence 8889999999 89999999875 4578888888 9999999999986
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.1e-08 Score=98.51 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=139.5
Q ss_pred ccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCceEEEE----------eccCceeEEEEe-----CCEEEEEEec
Q 015220 191 SLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----------ISDKNVQEIKIS-----PGIMLLIFTK 252 (411)
Q Consensus 191 ~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iys----------Ls~~~VqeIkIS-----dG~~Lai~q~ 252 (411)
.+.|||=| -+=.-|-.|++.....+.+-|||+..+.-... |.+++=..--+| .|.+| .
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll----s 195 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL----S 195 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe----e
Confidence 35566643 24456778899888899999999999875543 333311122233 33322 2
Q ss_pred CCCceeeEEEEecCCcE----EeEeeeccccCCcceeeee--ecceeEE-eecCceeeEEEcccceEEEeeccccCCCce
Q 015220 253 ASGHVPLKILSIEDGTV----LKSFNHLLHRNKKVDFIEQ--FNEKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSA 325 (411)
Q Consensus 253 t~~~ipiKIl~I~tG~~----L~t~~~LL~h~K~I~FLE~--~~ekllI-KQe~~~LkI~dL~t~e~~~v~~T~f~hpsA 325 (411)
.+.--.+-+|+|..... +......=+|...|+=++- +++.+|. -.++..|.|||++++ .-+...+.-.|+..
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAE 274 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCc
Confidence 33445688899984433 3333445577777765443 3455533 358999999999975 44455699999999
Q ss_pred EEEEeec----eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEE-EEecCCCCCccccCCc
Q 015220 326 FIFLYEN----QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNG 397 (411)
Q Consensus 326 fifLy~s----qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ii-S~~~d~~~~~~~~~~g 397 (411)
+.+|..| .+++|+ +|+||++||+| -..+-+|++|.. ++..|--||.-+.+. |.+.|.
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-----ev~~V~WSPh~etvLASSg~D~---------- 339 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-----EVFQVEWSPHNETVLASSGTDR---------- 339 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-----ceEEEEeCCCCCceeEecccCC----------
Confidence 9999988 889999 69999999999 568889999999 999999999988654 555555
Q ss_pred eEEEeeec
Q 015220 398 KLFVSLLM 405 (411)
Q Consensus 398 tI~i~~i~ 405 (411)
.++|||+.
T Consensus 340 rl~vWDls 347 (422)
T KOG0264|consen 340 RLNVWDLS 347 (422)
T ss_pred cEEEEecc
Confidence 99999985
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=94.06 Aligned_cols=190 Identities=17% Similarity=0.157 Sum_probs=142.3
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCce------------EEEEeccCceeEEEEe--------CCEEEEEEecCCCce
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT------------MLYSISDKNVQEIKIS--------PGIMLLIFTKASGHV 257 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys------------~iysLs~~~VqeIkIS--------dG~~Lai~q~t~~~i 257 (411)
..-|.+-|+-++++++|+.+-||||++-+ ++.--.++++....|+ .|||. .+ .=-=
T Consensus 49 L~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt-ss---SFDh 124 (397)
T KOG4283|consen 49 LQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT-SS---SFDH 124 (397)
T ss_pred eeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee-cc---cccc
Confidence 35789999999999999999999999854 2222234566666666 35542 11 1123
Q ss_pred eeEEEEecCCcEEeEeeeccccCCcceeeeeec--cee-EEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec
Q 015220 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKL-LVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN 332 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekl-lIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s 332 (411)
++||||-.|-|...+|+.- -.|+--+.++ -++ ||+- .+.++++-|+.+|..-- |+=+|...+.++--+
T Consensus 125 tlKVWDtnTlQ~a~~F~me----~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFKME----GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVEWS 197 (397)
T ss_pred eEEEeecccceeeEEeecC----ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---eeccccCceEEEEec
Confidence 7999999999999998831 2222222222 222 5554 78999999999999888 999999999999877
Q ss_pred ----eeEEEE-ecCeEEEEecC--CceeeeeccccccC---------CCCccceEEEcCCCCEEEEEecCCCCCccccCC
Q 015220 333 ----QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWH---------PDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (411)
Q Consensus 333 ----qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~---------~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~ 396 (411)
=++.|+ .|+.|++||.+ .--++.|..|..-. -+-.+|.++-|+||+.+.+...|+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~--------- 268 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD--------- 268 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc---------
Confidence 457788 89999999999 34677888887321 223568899999999999999999
Q ss_pred ceEEEeeeccee
Q 015220 397 GKLFVSLLMFVT 408 (411)
Q Consensus 397 gtI~i~~i~tGk 408 (411)
.|.+|+-+.|.
T Consensus 269 -r~r~wn~~~G~ 279 (397)
T KOG4283|consen 269 -RIRVWNMESGR 279 (397)
T ss_pred -ceEEeecccCc
Confidence 89999998885
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9e-08 Score=98.29 Aligned_cols=158 Identities=17% Similarity=0.238 Sum_probs=120.0
Q ss_pred hhCCCCCCCcceee---cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEec
Q 015220 176 RRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK 252 (411)
Q Consensus 176 ~~gk~~~~~~LF~~---~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~ 252 (411)
+.|++++..|+|+. -.|- +.+|.-|.-+++++++|.+++||..-.--+...++
T Consensus 66 k~Gr~d~~~P~v~GHt~~vLD----i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-------------------- 121 (472)
T KOG0303|consen 66 KTGRMDASYPLVCGHTAPVLD----IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-------------------- 121 (472)
T ss_pred cccccCCCCCCccCccccccc----cccCccCCceeecCCCCceEEEEECCCcccccCcc--------------------
Confidence 67999999999986 2222 56788899999999999999999764322222222
Q ss_pred CCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee---EEeecCceeeEEEcccceEEEeeccccCCCceEEEE
Q 015220 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL---LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (411)
Q Consensus 253 t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl---lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL 329 (411)
++.+. |-||++.|--++-|+--. +=+..++.++|||+.|||... |+. ||.-+...
T Consensus 122 ---------------epvv~---L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~ 179 (472)
T KOG0303|consen 122 ---------------EPVVE---LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSM 179 (472)
T ss_pred ---------------cceEE---EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEE
Confidence 33344 789999999999887543 445578899999999999887 777 99999888
Q ss_pred eec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEE
Q 015220 330 YEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 330 y~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
..| .+|.|- +|++|||||++ |++|..-..|.+-. ....|++ .||++.-.|
T Consensus 180 sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k---~~Raifl-~~g~i~tTG 234 (472)
T KOG0303|consen 180 SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK---PARAIFL-ASGKIFTTG 234 (472)
T ss_pred EeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC---cceeEEe-ccCceeeec
Confidence 877 778888 99999999999 99999777787732 2344554 577744444
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-08 Score=96.33 Aligned_cols=193 Identities=16% Similarity=0.263 Sum_probs=149.5
Q ss_pred CCCCeEEEeecCCCeEEEEEee---------------Cc---eEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLK---------------NY---TMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKI 261 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~---------------~Y---s~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKI 261 (411)
.++|-.++-++.|-.+|++|.. +. -.|++|-|+ +|..+..-|.--++++.-..+ -+|+
T Consensus 121 s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~--tvKl 198 (430)
T KOG0640|consen 121 SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN--TVKL 198 (430)
T ss_pred CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC--eEEE
Confidence 4678888888889999999987 11 257888887 888888885443444433333 4799
Q ss_pred EEecCCcEEeEeeeccccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEE
Q 015220 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFL 336 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFl 336 (411)
||+.--..-+.|+ -+--.-||..|--+ +|.+|+.-+-..+++||+.|-+.+.-++....|..|+..+.+| .+|+
T Consensus 199 FDfsK~saKrA~K-~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYv 277 (430)
T KOG0640|consen 199 FDFSKTSAKRAFK-VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYV 277 (430)
T ss_pred EecccHHHHHHHH-HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEE
Confidence 9987443333333 22333445555444 5667888888899999999999999888999999999999988 8999
Q ss_pred EE-ecCeEEEEecC-Cceeeeecc-ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeeeC
Q 015220 337 TF-RNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCKI 411 (411)
Q Consensus 337 Sf-sd~tI~iWn~~-Gel~~s~e~-H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~~ 411 (411)
|. .||-|++||== +.-++|+.. |-+ -++-+.-.|.+|+.|.|-.+|. ++|+|.|.||.|++
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~g----sevcSa~Ftkn~kyiLsSG~DS----------~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGG----SEVCSAVFTKNGKYILSSGKDS----------TVKLWEISTGRMLK 341 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCC----ceeeeEEEccCCeEEeecCCcc----------eeeeeeecCCceEE
Confidence 99 99999999977 667778864 444 5788899999999999999999 99999999999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-06 Score=83.85 Aligned_cols=191 Identities=14% Similarity=0.157 Sum_probs=152.3
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeC---ceEEEEecc---CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSISD---KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~---Ys~iysLs~---~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
+|-+-...|++|+++++|+.+|+|++.. +++.-.|.+ .-|-+|+-| .|..||...=- .-.-||.=++|+-
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD---~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD---ATVVIWKKEDGEF 95 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc---ceEEEeecCCCce
Confidence 4555555699999999999999999994 667666653 289999999 88888876544 3456888887765
Q ss_pred EeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceE---EEEeeceeEEEE-ecCeE
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAF---IFLYENQLFLTF-RNRTV 343 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAf---ifLy~sqlFlSf-sd~tI 343 (411)
..... |=||-.||-.++-+.++-+++ +.+...=||-+..++-++...-+-.|..-+ ++=.+..|++|. =|+||
T Consensus 96 ecv~~-lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 96 ECVAT-LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred eEEee-eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence 55333 779999999999998887776 589999999999888888666666666544 333455888998 79999
Q ss_pred EEEecC-Cc---eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 344 AVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 344 ~iWn~~-Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
++|... ++ ++.+|++|-. .+=.++..++|+-++|++.|. |++||-..|
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~-----TVW~~~F~~~G~rl~s~sdD~----------tv~Iw~~~~ 226 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHEN-----TVWSLAFDNIGSRLVSCSDDG----------TVSIWRLYT 226 (312)
T ss_pred EEEeecCCCCeeEEEEecCccc-----eEEEEEecCCCceEEEecCCc----------ceEeeeecc
Confidence 999988 55 8889999988 677888999999999999997 999997543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-07 Score=91.57 Aligned_cols=186 Identities=13% Similarity=0.144 Sum_probs=142.3
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeC-ceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
|-..+.+.-+++.+..|+++|+||+.- -++|.....+ ||.++--. ++.-++++ .=---||||+-.-++-+.|
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNRPNSVQT 142 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCCCcceEe
Confidence 345677888999999999999999765 4488777755 88888777 55545554 2223589999999999999
Q ss_pred eeeccccCCcceeeeeecce---eEEeecCceeeEEEcccc-eEEEeeccccCCCceEEEEeec----eeEEEE-ecCeE
Q 015220 273 FNHLLHRNKKVDFIEQFNEK---LLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTV 343 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI 343 (411)
|+ ||+.-|+-..-++-- ..=.+++..++|||++.. +.+.++ .|.+...+-.-+ .+++|+ .|++|
T Consensus 143 f~---gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~----ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 143 FN---GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE----AHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred ec---CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE----eccceeEeecccccCCcEEEecCCCceE
Confidence 55 788888755544432 244568999999999984 443332 255566665544 778999 99999
Q ss_pred EEEecC--CceeeeeccccccCCCCccceEEEcCC-CCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 344 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 344 ~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++||++ -.++--|.+|.+ .+..|.-||- -++|.|+|-|- |..|||.+.+.
T Consensus 216 r~wDir~~r~pl~eL~gh~~-----AVRkvk~Sph~~~lLaSasYDm----------T~riw~~~~~d 268 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGL-----AVRKVKFSPHHASLLASASYDM----------TVRIWDPERQD 268 (311)
T ss_pred EEEehhhccccceeecCCce-----EEEEEecCcchhhHhhhccccc----------eEEecccccch
Confidence 999999 668889999999 9999999996 57899999998 99999998653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=92.02 Aligned_cols=184 Identities=17% Similarity=0.242 Sum_probs=140.6
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce-EEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
-|.|+.-..++|| +++++.+|||||+-=+ +.-++.++ -|..+-.+ |..+|-. ...=-+.+||..||++..
T Consensus 105 ~~af~~ds~~llt-gg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS----add~tVRLWD~rTgt~v~ 179 (334)
T KOG0278|consen 105 AVAFSQDSNYLLT-GGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS----ADDKTVRLWDHRTGTEVQ 179 (334)
T ss_pred eEEecccchhhhc-cchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee----ccCCceEEEEeccCcEEE
Confidence 3678777666665 7889999999998755 66666655 66666666 6665432 222348999999999999
Q ss_pred EeeeccccCCcceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEe---eceeEEEE-ecCeEEEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY---ENQLFLTF-RNRTVAVW 346 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy---~sqlFlSf-sd~tI~iW 346 (411)
++.+ +.+|..+|++.|+. +...-+..++-||..+-+..+ .. .-|.-+-..- ..+.|+.+ .|..+..+
T Consensus 180 sL~~----~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK---s~-k~P~nV~SASL~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 180 SLEF----NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK---SY-KMPCNVESASLHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred EEec----CCCCcceeeccCCCEEEEecCceeEEecccccccee---ec-cCccccccccccCCCceEEecCcceEEEEE
Confidence 9553 57899999999987 455688999999999988776 11 1233222211 23778888 88899999
Q ss_pred ecC-Cceeeee-ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 347 NFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 347 n~~-Gel~~s~-e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|++ |+-+-++ .||-+ -+-.|-.||||++-.|||.|- ||.||.---||
T Consensus 252 Dy~TgeEi~~~nkgh~g-----pVhcVrFSPdGE~yAsGSEDG----------TirlWQt~~~~ 300 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFG-----PVHCVRFSPDGELYASGSEDG----------TIRLWQTTPGK 300 (334)
T ss_pred eccCCceeeecccCCCC-----ceEEEEECCCCceeeccCCCc----------eEEEEEecCCC
Confidence 999 9988887 88988 888999999999999999995 99999877665
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-06 Score=85.56 Aligned_cols=185 Identities=18% Similarity=0.169 Sum_probs=142.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
+.+|-.|-+++-|++..||.--|.+-|=+..+| -|=.+-|. +.--|++...- ..+||||.+||+.+.++..
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD---~t~kLWDv~tGk~la~~k~--- 92 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSAD---QTAKLWDVETGKQLATWKT--- 92 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecccc---ceeEEEEcCCCcEEEEeec---
Confidence 357888899999999999999999999888888 78888888 55555555443 4589999999999998553
Q ss_pred cCCcceeeeeeccee-EEee------cCceeeEEEcc-------cceEEEeeccccCCCceEEEEeec--eeEEEE-ecC
Q 015220 279 RNKKVDFIEQFNEKL-LVKQ------ENENLQILDVR-------NFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNR 341 (411)
Q Consensus 279 h~K~I~FLE~~~ekl-lIKQ------e~~~LkI~dL~-------t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~ 341 (411)
..+|.-++-..++- .+.. -..-+-++|++ +.|++.+-.|-- +++..++.-. +..+++ .|+
T Consensus 93 -~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 93 -NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDG 169 (327)
T ss_pred -CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCCC
Confidence 45666666655544 4433 33468899999 456444323332 4555555433 778888 999
Q ss_pred eEEEEecC-C-ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 342 TVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 342 tI~iWn~~-G-el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|..||.+ | +++-+-+.|-. .+|++-.|+|.-..|.+|+|. +-|+||..|=+|+
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~-----~Ind~q~s~d~T~FiT~s~Dt----------takl~D~~tl~v~ 225 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSS-----KINDLQFSRDRTYFITGSKDT----------TAKLVDVRTLEVL 225 (327)
T ss_pred cEEEEEcccCceeeechhhhcc-----ccccccccCCcceEEecccCc----------cceeeeccceeeE
Confidence 99999999 7 57778899999 999999999999999999999 9999999886664
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.2e-07 Score=93.71 Aligned_cols=187 Identities=16% Similarity=0.192 Sum_probs=139.0
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
.+||.|+.+..|.-+-|||-.+.+.++.++++ .|+...+-.|.==+.+-.+. =.+|||+++.-..+.+ +.||+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D--rsvkvw~~~~~s~vet---lyGHq 286 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD--RSVKVWSIDQLSYVET---LYGHQ 286 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC--CceEEEehhHhHHHHH---HhCCc
Confidence 57999999999999999999999999999988 77776666332111111111 2489999999999999 99999
Q ss_pred Ccceeeeeec-cee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-Cceeeee
Q 015220 281 KKVDFIEQFN-EKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSF 356 (411)
Q Consensus 281 K~I~FLE~~~-ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~ 356 (411)
..|.-|-.+. |.. .+--.+...++|++ .-|.+.|-+..-+.+..+.|+. .+=|+|+ .||+|.+|.+. =.++.+.
T Consensus 287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred cceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEe
Confidence 9998886554 444 33447899999999 6666665555544555555443 3559999 78899999998 5555543
Q ss_pred -ccccccCCCC-------ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 357 -EDHLLWHPDC-------NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 357 -e~H~~~~~~c-------~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.-|-. -|+- =++.+|..|--|+++|||-+- .+++|-+..|
T Consensus 365 ~~AHgv-~~~~~~~~~~~Witsla~i~~sdL~asGS~~G----------~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGV-IPELDPVNGNFWITSLAVIPGSDLLASGSWSG----------CVRLWKIEDG 412 (479)
T ss_pred eccccc-cCCccccccccceeeeEecccCceEEecCCCC----------ceEEEEecCC
Confidence 33433 3332 478999999999999999885 9999999988
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-07 Score=95.16 Aligned_cols=176 Identities=14% Similarity=0.043 Sum_probs=152.0
Q ss_pred cCCCeEEEEEeeCce--EEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc-cCCcceeee
Q 015220 212 AQDSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-RNKKVDFIE 287 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys--~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~-h~K~I~FLE 287 (411)
+-..+.-+|+-.+.+ .|.++..+.|..++-+ +|..||+.... -.+.|||+++-+.+.+ +.+ |...|-.|+
T Consensus 194 alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~---g~v~iwD~~~~k~~~~---~~~~h~~rvg~la 267 (484)
T KOG0305|consen 194 ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD---GTVQIWDVKEQKKTRT---LRGSHASRVGSLA 267 (484)
T ss_pred EecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecC---CeEEEEehhhcccccc---ccCCcCceeEEEe
Confidence 445677899999877 5566666799999999 99999998754 4689999999999998 445 999999999
Q ss_pred eecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeeeecccccc
Q 015220 288 QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLW 362 (411)
Q Consensus 288 ~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~ 362 (411)
=-...+..-+.+.+|..+|++..+...- ++-+|...+--|..+ +.|.|| -|+++.|||.+ -+++-++..|..
T Consensus 268 W~~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a- 344 (484)
T KOG0305|consen 268 WNSSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA- 344 (484)
T ss_pred ccCceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-
Confidence 9988899999999999999999988762 688899999999988 779999 99999999997 789999999999
Q ss_pred CCCCccceEEEcCCCC-EEEEE--ecCCCCCccccCCceEEEeeecceeee
Q 015220 363 HPDCNTNNIYITSDQD-LIISY--CKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd-~iiS~--~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.++.++-+|=|. +|++| ++|+ +|++||..||+++
T Consensus 345 ----AVKA~awcP~q~~lLAsGGGs~D~----------~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 345 ----AVKALAWCPWQSGLLATGGGSADR----------CIKFWNTNTGARI 381 (484)
T ss_pred ----eeeEeeeCCCccCceEEcCCCccc----------EEEEEEcCCCcEe
Confidence 999999999664 56664 5565 9999999999986
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=86.67 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=131.4
Q ss_pred CCCCeEEeeCCC--CeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe--CCEEEEEEecC-CCceeeEEEEec-
Q 015220 193 KWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS--PGIMLLIFTKA-SGHVPLKILSIE- 265 (411)
Q Consensus 193 ~~PgfvEFDd~N--GkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS--dG~~Lai~q~t-~~~ipiKIl~I~- 265 (411)
.|-|-|=-+|.| .+-|+.+++|.+.|+||.++.++++++.-. -|..+-.| +.++|++.+.. ....-+.++++.
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD 129 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence 455555555443 567888999999999999999999999855 77777777 55555555544 366788999998
Q ss_pred ------CCcEEeEeeeccccCCcceeee--eecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---ee
Q 015220 266 ------DGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QL 334 (411)
Q Consensus 266 ------tG~~L~t~~~LL~h~K~I~FLE--~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---ql 334 (411)
.-++++. ++-+-+++...- ..++.|+---|+.+|.+||+++|+...=+.++ |.+...-+--+ ..
T Consensus 130 ~~~~~~s~ep~~k---I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~--h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 130 DSSDIDSEEPYLK---IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE--HSSKINDLQFSRDRTY 204 (327)
T ss_pred ChhhhcccCceEE---ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh--hccccccccccCCcce
Confidence 3343444 233334444333 34455555569999999999999666544444 66654444433 67
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
|+|. .|.+-.+||.+ -+.+.|+. -+|-+|+++|||-.|.+|.|.--+.
T Consensus 205 FiT~s~Dttakl~D~~tl~v~Kty~------te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTLEVLKTYT------TERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred EEecccCccceeeeccceeeEEEee------ecccccceecccccceEEecCCcee
Confidence 9999 89999999988 66666654 5667999999999999999876553
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.1e-08 Score=99.70 Aligned_cols=186 Identities=15% Similarity=0.154 Sum_probs=147.4
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-C-CEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-P-GIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-d-G~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
-|||= .|.-.|.-.+.|..++.|+.-.-+ ++-+|.+. .|+.+..- | .++||-. +--.+.||++.+++++
T Consensus 180 ~v~~l-~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas----~d~~~r~Wnvd~~r~~ 254 (459)
T KOG0288|consen 180 DVEFL-RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS----NDKNLRLWNVDSLRLR 254 (459)
T ss_pred eeEEc-cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec----CCCceeeeeccchhhh
Confidence 45663 344567778899999999987744 88888877 89999887 4 4544432 2345789999999999
Q ss_pred eEeeeccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEe
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWN 347 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn 347 (411)
++ |-||+-+|-.+-.+-+..=+ -+.+-.||+|||++..+.+ |.+..+.-+=-+..-.+|+|+ -|++||+||
T Consensus 255 ~T---LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k---t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 255 HT---LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK---TVLPGSQCNDIVCSISDVISGHFDKKVRFWD 328 (459)
T ss_pred hh---hcccccceeeehhhccccceeeccccchhhhhhhhhhheec---cccccccccceEecceeeeecccccceEEEe
Confidence 99 78999999877666555523 3456689999999988887 888666655445556789999 999999999
Q ss_pred cC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 348 ~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
-+ ++++.+.+.|.. +.++-+|.||--+.|.+-|+ ++++.|+.|-+.
T Consensus 329 ~Rs~~~~~sv~~gg~------vtSl~ls~~g~~lLsssRDd----------tl~viDlRt~eI 375 (459)
T KOG0288|consen 329 IRSADKTRSVPLGGR------VTSLDLSMDGLELLSSSRDD----------TLKVIDLRTKEI 375 (459)
T ss_pred ccCCceeeEeecCcc------eeeEeeccCCeEEeeecCCC----------ceeeeecccccE
Confidence 88 889999999887 88999999999999999999 999999877543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.4e-07 Score=95.70 Aligned_cols=189 Identities=16% Similarity=0.169 Sum_probs=129.9
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCce-------EEEEeccCceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys-------~iysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
|++|--+++++=|-++++||++... .|.--..|.|-....| .+|+|+++-. .-.||+|= +|..+..
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~----aqakl~DR-dG~~~~e 250 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS----AQAKLLDR-DGFEIVE 250 (641)
T ss_pred cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC----cceeEEcc-CCceeee
Confidence 5788888889999999999999865 2222235577788888 7777777644 34577763 5555554
Q ss_pred ee----------eccccCCcceeeeeecce---eEEeecCceeeEEEcccceEEE-eeccccCCCceE---EEEeec--e
Q 015220 273 FN----------HLLHRNKKVDFIEQFNEK---LLVKQENENLQILDVRNFELTE-VSRTEFMTPSAF---IFLYEN--Q 333 (411)
Q Consensus 273 ~~----------~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAf---ifLy~s--q 333 (411)
|. .-=||-..+..-+-++.. .|-.+.+..|+|||+.+.+... |=.|.-+.+.-+ .|-+.. +
T Consensus 251 ~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~ 330 (641)
T KOG0772|consen 251 FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK 330 (641)
T ss_pred eeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc
Confidence 43 223666667666666543 2667799999999999865443 333333333322 233333 7
Q ss_pred eEEEE-ecCeEEEEecCCceeeeecccccc--CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 334 LFLTF-RNRTVAVWNFRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~Gel~~s~e~H~~~--~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+++++ -||+|.+|+..+- ...-.=|..- .+...+..|..|+||..|.|=+.|+ |.|||||..
T Consensus 331 ~iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~----------tLKvWDLrq 395 (641)
T KOG0772|consen 331 LIAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD----------TLKVWDLRQ 395 (641)
T ss_pred hhhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccccchhhhccCCC----------ceeeeeccc
Confidence 78888 9999999999533 3322233333 2345899999999999999999998 999999964
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=100.00 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=82.7
Q ss_pred eeecce--eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---ee-EEEEecCeEEEEecC-Cceeeeeccc
Q 015220 287 EQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QL-FLTFRNRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 287 E~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---ql-FlSfsd~tI~iWn~~-Gel~~s~e~H 359 (411)
.+++++ |++--|..++-||||..-.+.. ...+.-.--|-.+|++| ++ |..++|+.|+|||++ -.+||.|.||
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTpri-kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGh 550 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRI-KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 550 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcch-hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCC
Confidence 344444 4666678899999998855543 22332122345557777 44 777799999999999 6699999999
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.. -...|-||+||--|-+|.-|. |+.-||+.+|+
T Consensus 551 tD-----GascIdis~dGtklWTGGlDn----------tvRcWDlregr 584 (705)
T KOG0639|consen 551 TD-----GASCIDISKDGTKLWTGGLDN----------TVRCWDLREGR 584 (705)
T ss_pred CC-----CceeEEecCCCceeecCCCcc----------ceeehhhhhhh
Confidence 99 889999999999999999999 99999999986
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.8e-07 Score=97.21 Aligned_cols=155 Identities=15% Similarity=0.252 Sum_probs=126.2
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee---EEee--cCceeeEEEcc
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL---LVKQ--ENENLQILDVR 308 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl---lIKQ--e~~~LkI~dL~ 308 (411)
.|-.+++| ||+-||.+++-. .|.|++|+.-+.+-. .=.|-.||..||-+.+.+ |+++ .+--|-+||+.
T Consensus 461 G~R~~~vSp~gqhLAsGDr~G---nlrVy~Lq~l~~~~~---~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGG---NLRVYDLQELEYTCF---MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred ceEEEEECCCcceecccCccC---ceEEEEehhhhhhhh---eecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 68899999 999999999876 489999998777665 458899999999999988 6665 56789999997
Q ss_pred cc-eEEEeeccccCCCceEEE----------------------------------------------Eee------ceeE
Q 015220 309 NF-ELTEVSRTEFMTPSAFIF----------------------------------------------LYE------NQLF 335 (411)
Q Consensus 309 t~-e~~~v~~T~f~hpsAfif----------------------------------------------Ly~------sqlF 335 (411)
.. .+.. |+.+|++++.. ||- .++-
T Consensus 535 rny~l~q---tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 535 RNYDLVQ---TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred cccchhh---hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 54 3444 88999888765 221 1556
Q ss_pred EEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 336 LTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 336 lSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++. +|+.|+|+|.. |..+++|.|...-. =..=.|...|-|-.|++-|.|+ |+-++|.-+|+|.
T Consensus 612 ~t~cQDrnirif~i~sgKq~k~FKgs~~~e--G~lIKv~lDPSgiY~atScsdk----------tl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQVKSFKGSRDHE--GDLIKVILDPSGIYLATSCSDK----------TLCFVDFVSGECV 676 (1080)
T ss_pred EEEecccceEEEeccccceeeeecccccCC--CceEEEEECCCccEEEEeecCC----------ceEEEEeccchhh
Confidence 777 99999999999 99999998876611 1344678899999999999999 9999999999995
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=89.56 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=149.7
Q ss_pred cCCCCeEEeeCCC--CeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCC
Q 015220 192 LKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (411)
Q Consensus 192 l~~PgfvEFDd~N--GkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG 267 (411)
..-||---||-.- .++|+ ++.|++.-+||...-+.|..++++ .|-.++..+...+++..-+.. -|.||+..+.
T Consensus 217 t~~pgi~ald~~~s~~~ilT-GG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~--~i~vws~~~~ 293 (506)
T KOG0289|consen 217 TSTPGITALDIIPSSSKILT-GGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADE--IIRVWSVPLS 293 (506)
T ss_pred cCCCCeeEEeecCCCCccee-cCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcc--eEEeeccccc
Confidence 3457888888665 46665 566889999999999999999988 777888886666655555544 4568998887
Q ss_pred cEEeEeeeccccCCcceeeee--ecceeEEeecCceeeEEEcccceEEE-eeccccCCCceEEEEe---eceeEEEE-ec
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLY---ENQLFLTF-RN 340 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~--~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy---~sqlFlSf-sd 340 (411)
..-.. .-.|..||.++-. .+||+|=++.+...--.|+.+|..+. |+.. ..--++...+ -.-||.++ .|
T Consensus 294 s~~~~---~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 294 SEPTS---SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cCccc---cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec--cccceeEEeeEcCCceEEeccCCC
Confidence 74444 6688999998765 56888999999999999999987776 3331 0111222222 22568888 99
Q ss_pred CeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 341 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 341 ~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+.++|||+. ++-++.|-+|-+ .++.|..+++|=.++.+|.|. +|++||+.-
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-----~vk~i~FsENGY~Lat~add~----------~V~lwDLRK 420 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-----PVKAISFSENGYWLATAADDG----------SVKLWDLRK 420 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-----ceeEEEeccCceEEEEEecCC----------eEEEEEehh
Confidence 999999999 999999999999 999999999999999999997 899999864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-07 Score=94.34 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=127.3
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee-EEe-ecCceeeEEEcccce
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVK-QENENLQILDVRNFE 311 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIK-Qe~~~LkI~dL~t~e 311 (411)
||=-++.| +|-.||........+..+|...---++.+| |.+|.++|-+|.-+||-- |++ .-++-+.+||+.+|+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t---lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT---LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeee---eecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 88888999 999999999998888877776666777888 889999999999999866 333 356679999999999
Q ss_pred EEE-eeccccCCCceEEEEeeceeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCC
Q 015220 312 LTE-VSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSD 389 (411)
Q Consensus 312 ~~~-v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~ 389 (411)
.+. .+.+.-+.++.....--.+-|+++ .|++|--|+++|+++-.-+|-.- ..+--++||+||+.+++-++|+
T Consensus 303 ~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~----~~v~dlait~Dgk~vl~v~~d~-- 376 (519)
T KOG0293|consen 303 LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD----PKVHDLAITYDGKYVLLVTVDK-- 376 (519)
T ss_pred hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc----ceeEEEEEcCCCcEEEEEeccc--
Confidence 986 444434455555555556779999 89999999999999887777653 4567899999999999999999
Q ss_pred CccccCCceEEEeeecce
Q 015220 390 DPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 390 ~~~~~~~gtI~i~~i~tG 407 (411)
.|.+.+.+|-
T Consensus 377 --------~i~l~~~e~~ 386 (519)
T KOG0293|consen 377 --------KIRLYNREAR 386 (519)
T ss_pred --------ceeeechhhh
Confidence 7888877664
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.9e-07 Score=89.38 Aligned_cols=178 Identities=19% Similarity=0.260 Sum_probs=127.9
Q ss_pred EEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEE------ec------------
Q 015220 207 VLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILS------IE------------ 265 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~------I~------------ 265 (411)
|+..-+.|.+-++|.+.+..+|.+-.++ -|-.||++ .|+++++..+... ..||. ..
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t---aHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET---AHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc---hHHHHHhhcCcCCCCCCCCCCCchh
Confidence 5555677999999999999999999988 89999999 7888887765432 12222 00
Q ss_pred ------------------CCc-EEeEeeeccccCCcceeeeeecc--eeEEeecCceeeEEEcccceEEEeeccccCCCc
Q 015220 266 ------------------DGT-VLKSFNHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEVSRTEFMTPS 324 (411)
Q Consensus 266 ------------------tG~-~L~t~~~LL~h~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps 324 (411)
+|- +-..+..|-||+.+|-.-+-.-+ .+.-++=+-.-.+||+.+||... .+.+|-+
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~---~LtGHd~ 315 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN---ILTGHDS 315 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec---cccCcch
Confidence 221 11133346678777766554433 33567788889999999999998 7888877
Q ss_pred eEEEEe---eceeEEEE-ecCeEEEEecCCc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCce
Q 015220 325 AFIFLY---ENQLFLTF-RNRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGK 398 (411)
Q Consensus 325 AfifLy---~sqlFlSf-sd~tI~iWn~~Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gt 398 (411)
.....- +..|.+|- +|.|+|+|||+-. -|.-|.||.- ..+-.+| + .+|-++|||.|. |
T Consensus 316 ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd----tVTS~vF-~-~dd~vVSgSDDr----------T 379 (481)
T KOG0300|consen 316 ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD----TVTSVVF-N-TDDRVVSGSDDR----------T 379 (481)
T ss_pred hccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc----ceeEEEE-e-cCCceeecCCCc----------e
Confidence 665443 22666666 8999999999933 4668999887 3444444 3 457799999999 9
Q ss_pred EEEeeecc
Q 015220 399 LFVSLLMF 406 (411)
Q Consensus 399 I~i~~i~t 406 (411)
|||||+..
T Consensus 380 vKvWdLrN 387 (481)
T KOG0300|consen 380 VKVWDLRN 387 (481)
T ss_pred EEEeeecc
Confidence 99999874
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-05 Score=76.21 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=114.7
Q ss_pred eEEEeecCCCeEEEEEeeC-ce--EEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEec-CCcEEeEeeecccc
Q 015220 206 KVLTYSAQDSIYKVFDLKN-YT--MLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHR 279 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~-Ys--~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~h 279 (411)
++.+..+.++.+.+||+.+ .+ .+.++. ..+.+-+.+| ||.+|++..... --|.+|++. +|++...-...++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~~g~l~~~~~~~~~- 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE--FRVLSYRIADDGALTFAAESPLP- 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC--CcEEEEEECCCCceEEeeeecCC-
Confidence 3566778899999999964 33 666664 3478889999 888888876644 446788886 6764321111122
Q ss_pred CCcceeeeeecce--eEEee-cCceeeEEEccc-ceEEEeeccc--cCCCceEEEEeec-eeEEEE-ecCeEEEEecC--
Q 015220 280 NKKVDFIEQFNEK--LLVKQ-ENENLQILDVRN-FELTEVSRTE--FMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-- 349 (411)
Q Consensus 280 ~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t-~e~~~v~~T~--f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-- 349 (411)
.....|..++++ +++.. .+..|.+||+.+ +...+...+. -.+|....+-... .+|++- .+++|.+|+++
T Consensus 80 -~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 -GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred -CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 235678888765 45544 478999999974 3222211121 1344443332222 555666 77999999997
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|.+......-..-.+......+.++|||+++.+.+.. .++|.+||+.
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~---------~~~v~v~~~~ 205 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL---------NSSVDVWQLK 205 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC---------CCEEEEEEEe
Confidence 4442110000000112334679999999999887652 2599999997
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-05 Score=90.72 Aligned_cols=209 Identities=12% Similarity=0.147 Sum_probs=141.6
Q ss_pred eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-------------------ceeEEEEeC-CEE
Q 015220 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------------------NVQEIKISP-GIM 246 (411)
Q Consensus 187 F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-------------------~VqeIkISd-G~~ 246 (411)
|....+..|--+-||..++.+.+.....+.++++|+.+.. +.++.+. .-..+.+++ +-.
T Consensus 618 ~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~ 696 (1057)
T PLN02919 618 FEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK 696 (1057)
T ss_pred hhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe
Confidence 4567889999999999888899988889999999998754 4333211 224677774 444
Q ss_pred EEEEecCCCceeeEEEEecCCcEEeEee------eccc------cCCcceeeeeecce--eEEee-cCceeeEEEcccce
Q 015220 247 LLIFTKASGHVPLKILSIEDGTVLKSFN------HLLH------RNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRNFE 311 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~tG~~L~t~~------~LL~------h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t~e 311 (411)
|.+....+++ |.+|+..+|.... +. ..-+ .-....-|.+.+++ ++|.- +++.|++||+.+++
T Consensus 697 LyVad~~~~~--I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 697 VYIAMAGQHQ--IWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred EEEEECCCCe--EEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 4455444444 6778888887642 10 0000 01223447787764 66664 67999999999876
Q ss_pred EEEee---------------------ccccCCCceEEEEeeceeEEEE-ecCeEEEEecCCceeeeecccc---------
Q 015220 312 LTEVS---------------------RTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRGELVTSFEDHL--------- 360 (411)
Q Consensus 312 ~~~v~---------------------~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~Gel~~s~e~H~--------- 360 (411)
...+. ...+.||..+.+-...++|++- .|++|++||+.+..++++-+.-
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 54321 1246688887776666899988 7889999999965555554421
Q ss_pred ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 361 ~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.-+..-.-.-|++++||+++|+-+.+. +|.+||+.||+.
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn----------~Irvid~~~~~~ 892 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNS----------LIRYLDLNKGEA 892 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCC----------EEEEEECCCCcc
Confidence 111112456799999999998865555 999999999975
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-06 Score=91.64 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=119.9
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeee--cceeEEeecCceeeEEEcccce
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFE 311 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e 311 (411)
++..+.+| ||-+||++..-+-. .||+.+|+++++. +=||..+|--+..- ...++-.+.+-.+++||+.--.
T Consensus 204 eil~~avS~Dgkylatgg~d~~v---~Iw~~~t~ehv~~---~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHV---QIWDCDTLEHVKV---FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceE---EEecCcccchhhc---ccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 88889999 99999988766543 7999999999999 45888998877654 3456889999999999999999
Q ss_pred EEEeeccccCCCceEEEEeec--eeEEEE--ecCeEEEEecCCceeeeeccccccCCCCccceE-EEcCCCCEEEEEecC
Q 015220 312 LTEVSRTEFMTPSAFIFLYEN--QLFLTF--RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI-YITSDQDLIISYCKA 386 (411)
Q Consensus 312 ~~~v~~T~f~hpsAfifLy~s--qlFlSf--sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i-~Is~Dqd~iiS~~~d 386 (411)
.++ |+|+|++++..+... +-.+|. +|+|+++|+.--|---.|.+|.. .+.-+ +|++ +-.+|||.+
T Consensus 278 ~ve---tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~-----sidcv~~In~--~HfvsGSdn 347 (479)
T KOG0299|consen 278 YVE---TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEG-----SIDCVAFIND--EHFVSGSDN 347 (479)
T ss_pred HHH---HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCC-----CeeeEEEecc--cceeeccCC
Confidence 999 999999999998866 556665 99999999996554447888865 34444 4443 456788876
Q ss_pred CCCCccccCCceEEEeeecceeee
Q 015220 387 DSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 387 ~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+|-+|++.+-|-+
T Consensus 348 ----------G~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 348 ----------GSIALWSLLKKKPL 361 (479)
T ss_pred ----------ceEEEeeecccCce
Confidence 59999999876643
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-06 Score=88.00 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=150.6
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
-+|--|++...++..|+|+. +..++.++.-+ -|-.+|-+ +|.+|+.+.-.+- +-|||.++|+..--|.+ |
T Consensus 245 ~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t---tilwd~~~g~~~q~f~~---~ 317 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGT---TILWDAHTGTVKQQFEF---H 317 (524)
T ss_pred CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCcc---EEEEeccCceEEEeeee---c
Confidence 46899999999999999995 56677777755 78888888 8888877765554 46999999999988763 3
Q ss_pred CCc-ceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Ccee
Q 015220 280 NKK-VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELV 353 (411)
Q Consensus 280 ~K~-I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~ 353 (411)
+.| +|.-=|.++.--.-.-+.-|.++=|.-..+.. |.-+|--.+.+|-.+ .|++|- .|+|++||+.. +.-+
T Consensus 318 s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~---t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 318 SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK---TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred cCCccceEEecCceEeecCCCceEEEEEecCCCcce---eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 455 77667788888777888889999999999998 999999999999887 888888 77899999976 7777
Q ss_pred eeeccccccCCCCccceEEEcC---------CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 354 TSFEDHLLWHPDCNTNNIYITS---------DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 354 ~s~e~H~~~~~~c~~n~i~Is~---------Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-.|-.|.- ++-+|.-|| +|..|+|.+.|. |+++||++.|.|+
T Consensus 395 ~~l~~Hsk-----ei~t~~wsp~g~v~~n~~~~~~l~sas~ds----------tV~lwdv~~gv~i 445 (524)
T KOG0273|consen 395 HDLQAHSK-----EIYTIKWSPTGPVTSNPNMNLMLASASFDS----------TVKLWDVESGVPI 445 (524)
T ss_pred hhhhhhcc-----ceeeEeecCCCCccCCCcCCceEEEeecCC----------eEEEEEccCCcee
Confidence 78889984 555555555 467899999998 9999999999987
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-06 Score=84.83 Aligned_cols=205 Identities=16% Similarity=0.165 Sum_probs=146.1
Q ss_pred eeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe-
Q 015220 119 AFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF- 197 (411)
Q Consensus 119 af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf- 197 (411)
++|..||--|--+ .+.-+||++=|....+.|.|=+- . +..++=++.+ ..-|+. |.-.|||-
T Consensus 85 vw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~----e------kllrvfdln~----p~App~--E~~ghtg~I 146 (334)
T KOG0278|consen 85 VWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQ----E------KLLRVFDLNR----PKAPPK--EISGHTGGI 146 (334)
T ss_pred hhhhhhhhhhhhh--hhhheeeeEEecccchhhhccch----H------HHhhhhhccC----CCCCch--hhcCCCCcc
Confidence 4666666533211 34558888888887777776220 0 1111112222 112332 45567775
Q ss_pred --EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 198 --VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 198 --vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
++|+-.+--||-+ +.|+++|.||-++.+...+|.=+ .|.+..+| ||.+|-+... ..||.|+..+-.+|++.
T Consensus 147 r~v~wc~eD~~iLSS-add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g----ssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSS-ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG----SSVKFWDAKSFGLLKSY 221 (334)
T ss_pred eeEEEeccCceEEee-ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC----ceeEEeccccccceeec
Confidence 6899888777766 99999999999999999999844 99999999 9998888765 57999999999999986
Q ss_pred eeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEe
Q 015220 274 NHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn 347 (411)
... -.|..--++|++-+.-- |+-+.--||..||+-+.- -..+|+.++++|-.+ ++|.++ .|+||++|.
T Consensus 222 k~P----~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 222 KMP----CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred cCc----cccccccccCCCceEEecCcceEEEEEeccCCceeee--cccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 521 23444445555553333 445666789999999873 147899999999998 999999 999999999
Q ss_pred cC-Cce
Q 015220 348 FR-GEL 352 (411)
Q Consensus 348 ~~-Gel 352 (411)
.. |..
T Consensus 296 t~~~~~ 301 (334)
T KOG0278|consen 296 TTPGKT 301 (334)
T ss_pred ecCCCc
Confidence 87 543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.8e-05 Score=77.86 Aligned_cols=244 Identities=14% Similarity=0.192 Sum_probs=166.2
Q ss_pred ceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh-h
Q 015220 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI-E 173 (411)
Q Consensus 97 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~-~ 173 (411)
+|.+|=+. -+.+++=++.-.-+.||..+|+..|.||--..- |..+=|=.-..++|--|. +.| -.++|-++.- .
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG-~~~~~Fth~~~~~i~sSt-k~d--~tIryLsl~dNk 91 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG-VDLACFTHHSNTVIHSST-KED--DTIRYLSLHDNK 91 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccc-ccEEEEecCCceEEEccC-CCC--CceEEEEeecCc
Confidence 44444444 244455566667889999999999999965333 233334444556666554 222 2355554432 2
Q ss_pred hhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEec
Q 015220 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTK 252 (411)
Q Consensus 174 ~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~ 252 (411)
|||= |..-. +.=-..+-...+ ...++.+-|+++|.|||+.-++.--|.--.=--++.. .|.++|+..+
T Consensus 92 ylRY---------F~GH~-~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 92 YLRY---------FPGHK-KRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred eEEE---------cCCCC-ceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence 3321 22100 000123344445 7788899999999999998776644432222234455 7888888888
Q ss_pred CCCceeeEEEEec--CCcEEeEeeeccccCCcceeeeeecce--eEEeecCceeeEEEcccceEEEeeccccCCCceE--
Q 015220 253 ASGHVPLKILSIE--DGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAF-- 326 (411)
Q Consensus 253 t~~~ipiKIl~I~--tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf-- 326 (411)
++ .|||+|+. +..+--+|...-+...+..-||-+|++ |||--+++.+.+.|-=+|.... |.-++|.+.
T Consensus 161 ~~---~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~---tfs~~~~~~~~ 234 (311)
T KOG1446|consen 161 SE---LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS---TFSGYPNAGNL 234 (311)
T ss_pred CC---eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee---eEeeccCCCCc
Confidence 77 89999997 567777877666888999999999986 5888899999999999999777 444455444
Q ss_pred ----EEEeeceeEEEE-ecCeEEEEecC-Cceeeeecc-ccc
Q 015220 327 ----IFLYENQLFLTF-RNRTVAVWNFR-GELVTSFED-HLL 361 (411)
Q Consensus 327 ----ifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~-H~~ 361 (411)
.|--.++-+|++ .|++|-+||++ |..+..+.+ |..
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~ 276 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGG 276 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCC
Confidence 555677999999 56999999999 999999988 444
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-05 Score=84.67 Aligned_cols=179 Identities=20% Similarity=0.215 Sum_probs=135.4
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
|.|.|- .+| -|-+.+-++.+.-|||.+.+++|.+... -+=+|.++ -+-.||++ |..+ -+..+++.+
T Consensus 73 E~L~W~-------e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig-cddG--vl~~~s~~p 141 (691)
T KOG2048|consen 73 ESLAWA-------EGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG-CDDG--VLYDFSIGP 141 (691)
T ss_pred eeEEEc-------cCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee-cCCc--eEEEEecCC
Confidence 566665 344 4667777899999999999999888744 77788888 34556666 3333 677888888
Q ss_pred CcEEeEeeeccccC-Ccceeeeeeccee--EEeecCceeeEEEcccceEEE-eeccccCCCc-------eEEEEeeceeE
Q 015220 267 GTVLKSFNHLLHRN-KKVDFIEQFNEKL--LVKQENENLQILDVRNFELTE-VSRTEFMTPS-------AFIFLYENQLF 335 (411)
Q Consensus 267 G~~L~t~~~LL~h~-K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~-v~~T~f~hps-------AfifLy~sqlF 335 (411)
|++.... .|+++ ..|=.+.-.++.. ..-+.+.-|+|||+.++.... +-.-+....+ ++.|| --...
T Consensus 142 ~~I~~~r--~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI 218 (691)
T KOG2048|consen 142 DKITYKR--SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTI 218 (691)
T ss_pred ceEEEEe--ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcE
Confidence 8888764 45665 6777777777766 556688889999999977655 2222222233 35555 22667
Q ss_pred EEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 336 LTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 336 lSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+++ |-|+|.+||.. |.|+.++.-|.. .+..++.++++|.++|+..|.
T Consensus 219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~a-----dVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLIQSHSCHDA-----DVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEecCCceEEEEcccCcchhhhhhhhhc-----ceeEEEEcCCCCeEEEccCCC
Confidence 888 99999999999 999999999999 999999999999999999998
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-06 Score=86.78 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=129.7
Q ss_pred CCeEEEeecCCCeEEEEEeeCc----------------eEEEEeccCceeEEEE--eC---CEEEEEEecCCCceeeEEE
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNY----------------TMLYSISDKNVQEIKI--SP---GIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Y----------------s~iysLs~~~VqeIkI--Sd---G~~Lai~q~t~~~ipiKIl 262 (411)
|..+.++-++.+-.+||||... .+||+...+...-..+ || |- |+.++|.. -|.+|
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~-LlsGDc~~---~I~lw 239 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR-LLSGDCVK---GIHLW 239 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc-cccCcccc---ceEee
Confidence 7778888889999999999762 2444444432222222 22 21 34444433 47889
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeec-ceeEEee--cCceeeEEEcccc-eEEEeeccccCCCceEEEEeec---eeE
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQ--ENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYEN---QLF 335 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~-ekllIKQ--e~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~s---qlF 335 (411)
--.||.=...-.-+.+|++-|+=|.=++ |.=++++ -++.|+|||++++ +.-+|.. ..|++-+-.+--| .++
T Consensus 240 ~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~~~lL 317 (440)
T KOG0302|consen 240 EPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRREPLL 317 (440)
T ss_pred eeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCCceeeEEccCCccee
Confidence 8889887776666889999999888765 3335555 7899999999998 3333433 5677777777766 457
Q ss_pred EEE-ecCeEEEEecC----CceeeeeccccccCCCCccceEEEcCCCCEEE-EEecCCCCCccccCCceEEEeeecc
Q 015220 336 LTF-RNRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 336 lSf-sd~tI~iWn~~----Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ii-S~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+|+ -||++.|||+| |.+|++|.-|.. -+.+|.-+|..+..| +++.|. .|-||||..
T Consensus 318 asG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-----pItsieW~p~e~s~iaasg~D~----------QitiWDlsv 379 (440)
T KOG0302|consen 318 ASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-----PITSIEWHPHEDSVIAASGEDN----------QITIWDLSV 379 (440)
T ss_pred eecCCCceEEEEEhhhccCCCcceeEEeccC-----CeeEEEeccccCceEEeccCCC----------cEEEEEeec
Confidence 777 88899999999 789999999999 899999997655433 334455 899999864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=91.11 Aligned_cols=240 Identities=15% Similarity=0.200 Sum_probs=154.9
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC--CcceeecccCCCCeEEeeCCCCeEEEee
Q 015220 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG--FALFESESLKWPGFVEFDDVNGKVLTYS 211 (411)
Q Consensus 134 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~--~~LF~~~~l~~PgfvEFDd~NGkiLt~~ 211 (411)
...++.+++.=-.+.-++|. ..-|+=--|-|-.- |+++.=..+.| +-+|...-=-.|--.-. -|+|.-++.+
T Consensus 257 ~~~kl~~tlvgh~~~V~yi~---wSPDdryLlaCg~~--e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W-~pDg~~~V~G 330 (519)
T KOG0293|consen 257 VHFKLKKTLVGHSQPVSYIM---WSPDDRYLLACGFD--EVLSLWDVDTGDLRHLYPSGLGFSVSSCAW-CPDGFRFVTG 330 (519)
T ss_pred cceeeeeeeecccCceEEEE---ECCCCCeEEecCch--HheeeccCCcchhhhhcccCcCCCcceeEE-ccCCceeEec
Confidence 33445666655444434443 33444455556443 22333222223 34454430011111111 2677779999
Q ss_pred cCCCeEEEEEeeCceEEEEeccC---ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeee
Q 015220 212 AQDSIYKVFDLKNYTMLYSISDK---NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys~iysLs~~---~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE 287 (411)
++|.++--||+.. ..++.-.+. .|.+++|+ ||-.+++.. ++ --|.+++.++-...+ +.--..||-.+-
T Consensus 331 s~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d--~~i~l~~~e~~~dr~----lise~~~its~~ 402 (519)
T KOG0293|consen 331 SPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVT-VD--KKIRLYNREARVDRG----LISEEQPITSFS 402 (519)
T ss_pred CCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEe-cc--cceeeechhhhhhhc----cccccCceeEEE
Confidence 9999999999865 334444444 49999999 777665554 33 335677887766554 223346777788
Q ss_pred eeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEE-----Eeec-eeEEEE-ecCeEEEEecC-Cceeeeec
Q 015220 288 QFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF-----LYEN-QLFLTF-RNRTVAVWNFR-GELVTSFE 357 (411)
Q Consensus 288 ~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif-----Ly~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e 357 (411)
+++++- |+-=.++-|++||+.-..+.. -.+||...+.- -+.+ ..-+|+ .|.+|.||+.. |.|+..|.
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~---kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVR---KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHH---HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 888776 666799999999999665555 78888876542 2344 556777 88999999999 99999999
Q ss_pred cccccCCCCccceEEEcCC-CCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 358 DHLLWHPDCNTNNIYITSD-QDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 358 ~H~~~~~~c~~n~i~Is~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
||.. .+|-|+-.|. -..+.|++.| |||+||-+.
T Consensus 480 GHs~-----~vNcVswNP~~p~m~ASasDD----------gtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSK-----TVNCVSWNPADPEMFASASDD----------GTIRIWGPS 513 (519)
T ss_pred CCcc-----eeeEEecCCCCHHHhhccCCC----------CeEEEecCC
Confidence 9998 7888877774 3456666666 499999764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-05 Score=80.76 Aligned_cols=186 Identities=10% Similarity=0.086 Sum_probs=146.1
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
.||-.-++.++.|.-=-||++.+...+++|+++ -|.++..| ||.+||+..=.. -++||...||....+ ++.
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG---~v~v~~~stg~~~~~---~~~ 146 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSG---KVLVFKVSTGGEQWK---LDQ 146 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCc---cEEEEEcccCceEEE---eec
Confidence 347778888888888889999999999999976 89999999 999999987664 479999999999999 667
Q ss_pred cCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceEEE---EeeceeEEEE-ecCeEEEEecC-Cc
Q 015220 279 RNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIF---LYENQLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif---Ly~sqlFlSf-sd~tI~iWn~~-Ge 351 (411)
.-.+|..|.=|+-.+++. .++..+=.|.+-++..-+ ..-+|.+-..+ ...-+..+++ .|+||++||+. |.
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~k---v~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCK---VMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcceee---EecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 778899999999777544 477889999999943332 34445554443 2234677777 99999999999 99
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++....+-... +..=+.++.++-++++|+++- ...+.+.-|||++
T Consensus 224 p~~~~~~~e~~----~~~~~~~~~~~~~~~~g~~e~----------~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 224 PLHKITQAEGL----ELPCISLNLAGSTLTKGNSEG----------VACGVNNGSGKVV 268 (399)
T ss_pred eeEEecccccC----cCCccccccccceeEeccCCc----------cEEEEccccceEE
Confidence 88877744433 233467899999999999997 7777777777764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-05 Score=77.57 Aligned_cols=197 Identities=13% Similarity=0.142 Sum_probs=147.9
Q ss_pred ceeecccCCCCeEE---eeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceee
Q 015220 186 LFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPL 259 (411)
Q Consensus 186 LF~~~~l~~PgfvE---FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipi 259 (411)
+++-+--.|-+-|| .|.++--.++.-+.|+++++||.+..+++..+.. +|+- |.-| ||...++.....- |
T Consensus 55 ~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~---i 130 (313)
T KOG1407|consen 55 RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDR---I 130 (313)
T ss_pred hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCccc---E
Confidence 44444444444444 5777877888889999999999999999977763 3443 3333 7777777766553 5
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeecc-ee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---ee
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE-KL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QL 334 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e-kl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---ql 334 (411)
..++.-+-+++++..+ +++++=+--.++ .+ ++-.+...+.|+.--.=|+.. ++-.||+.-+|+..+ +.
T Consensus 131 t~id~r~~~~~~~~~~----~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~---si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 131 TFIDARTYKIVNEEQF----KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ---SIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred EEEEecccceeehhcc----cceeeeeeecCCCCEEEEecCCceEEEEecccccccc---ccccCCcceEEEEECCCCce
Confidence 5677788888876442 233332222232 33 566677999999998888888 999999999999988 78
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|+++ .|-.+.+||++ ---+|.|..|.- -+.+|-.|-||+.|.|+|.|- .|.|=+.+||.
T Consensus 204 fA~GsADAlvSLWD~~ELiC~R~isRldw-----pVRTlSFS~dg~~lASaSEDh----------~IDIA~vetGd 264 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDELICERCISRLDW-----PVRTLSFSHDGRMLASASEDH----------FIDIAEVETGD 264 (313)
T ss_pred EeeccccceeeccChhHhhhheeeccccC-----ceEEEEeccCcceeeccCccc----------eEEeEecccCC
Confidence 9999 88899999999 334558888766 899999999999999999999 88888888885
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0001 Score=66.03 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=113.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
.+|++++. ..++.+..||..+.+.+-+.+ +.-.....+.++.+++.. ..+ .+-.+|++||++++++.......
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~--~~~--~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGT--SDG--SLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEE--TTS--EEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEE-cCCCEEEEEECCCCCEEEEeeccccccceeeeccccccccc--cee--eeEecccCCcceeeeeccccccc
Confidence 35555554 588899999999999884444 332222355677765555 222 78889999999999943111000
Q ss_pred C---cceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCc------------eEEEEeeceeEEEEecC-eEE
Q 015220 281 K---KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS------------AFIFLYENQLFLTFRNR-TVA 344 (411)
Q Consensus 281 K---~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps------------AfifLy~sqlFlSfsd~-tI~ 344 (411)
. ..--..+.++.+++...+..|..+|+.+|+..---.. ..|. +-..+....+|++-.++ .+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV--GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVA 187 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES--STT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEE
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec--CCCCCCcceeeecccccceEEECCEEEEEcCCCeEEE
Confidence 1 1112333477788888899999999999998541111 1211 22222333667766666 467
Q ss_pred EEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 345 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 345 iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+ |+. |+.+- +.... .... ....+++.++..+.+. .+-.+|+.|||.+
T Consensus 188 ~-d~~tg~~~w--~~~~~-----~~~~-~~~~~~~~l~~~~~~~----------~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 188 V-DLATGEKLW--SKPIS-----GIYS-LPSVDGGTLYVTSSDG----------RLYALDLKTGKVV 235 (238)
T ss_dssp E-ETTTTEEEE--EECSS------ECE-CEECCCTEEEEEETTT----------EEEEEETTTTEEE
T ss_pred E-ECCCCCEEE--EecCC-----CccC-CceeeCCEEEEEeCCC----------EEEEEECCCCCEE
Confidence 7 888 77443 22211 1111 1568889999988665 9999999999975
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0003 Score=68.75 Aligned_cols=266 Identities=15% Similarity=0.083 Sum_probs=154.8
Q ss_pred eeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC
Q 015220 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (411)
Q Consensus 102 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~ 181 (411)
+.+.+.|++.+..|.-.|||..||+.+--.+... ++..+.... ++.+++.+ .+ ..|.|-.. ..|+.-
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v~--~~~v~v~~---~~--g~l~ald~-----~tG~~~ 128 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGAD--GGLVFVGT---EK--GEVIALDA-----EDGKEL 128 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEEc--CCEEEEEc---CC--CEEEEEEC-----CCCcEe
Confidence 3457899999999999999999999887666543 333344333 34444322 11 23433322 122220
Q ss_pred CCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc-e------eEEEEeCCEEEEEEecCC
Q 015220 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-V------QEIKISPGIMLLIFTKAS 254 (411)
Q Consensus 182 ~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~-V------qeIkISdG~~Lai~q~t~ 254 (411)
=.. -+.......|-. .++++++ ...++.+..||.++.+.+.+..... . ....+.+|.+++ ... +
T Consensus 129 W~~-~~~~~~~~~p~v-----~~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~-~ 199 (377)
T TIGR03300 129 WRA-KLSSEVLSPPLV-----ANGLVVV-RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA-G 199 (377)
T ss_pred eee-ccCceeecCCEE-----ECCEEEE-ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC-C
Confidence 000 011122333432 1345544 4568889999999999887766431 1 122344665433 222 2
Q ss_pred CceeeEEEEecCCcEEeEeeeccccC-C------cc-eeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 255 GHVPLKILSIEDGTVLKSFNHLLHRN-K------KV-DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~LL~h~-K------~I-~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
. .+..+|++||+.+.+...-.+.. . .+ ....+.++.+++...+..+..||+.+|+..--. ....+...
T Consensus 200 g--~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~--~~~~~~~p 275 (377)
T TIGR03300 200 G--KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR--DASSYQGP 275 (377)
T ss_pred C--EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee--ccCCccCc
Confidence 2 46788999999998754211110 0 01 112346788898888999999999999765411 12222222
Q ss_pred EEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 327 IFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 327 ifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.++..++|+.-.++.+..+|.. |+++-+.+.-.. .+ ..+..+ .++.|+.++.+. .+.++|..
T Consensus 276 -~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~---~~-~ssp~i--~g~~l~~~~~~G----------~l~~~d~~ 338 (377)
T TIGR03300 276 -AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY---RQ-LTAPAV--VGGYLVVGDFEG----------YLHWLSRE 338 (377)
T ss_pred -eEeCCEEEEECCCCeEEEEECCCCcEEEccccccC---Cc-cccCEE--ECCEEEEEeCCC----------EEEEEECC
Confidence 2556688887789999999997 988765532110 01 112222 356777776654 88889988
Q ss_pred ceeee
Q 015220 406 FVTCK 410 (411)
Q Consensus 406 tGk~~ 410 (411)
|||.+
T Consensus 339 tG~~~ 343 (377)
T TIGR03300 339 DGSFV 343 (377)
T ss_pred CCCEE
Confidence 88875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-06 Score=86.96 Aligned_cols=185 Identities=19% Similarity=0.220 Sum_probs=137.5
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEec---cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs---~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+.+.|+++++|+-+|||..++..+|+... .+.|-.++.| |+.-++. +..---+.|-.+..|+.|++| -||
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS---~sfD~tvRiHGlKSGK~LKEf---rGH 347 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS---ASFDQTVRIHGLKSGKCLKEF---RGH 347 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhc---ccccceEEEeccccchhHHHh---cCc
Confidence 66789999999999999999999997776 2388899999 5543332 223345788999999999994 489
Q ss_pred CCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCC-----ceEEEEeec-eeEEEE-ecCeEEEEecCC
Q 015220 280 NKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTP-----SAFIFLYEN-QLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 280 ~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hp-----sAfifLy~s-qlFlSf-sd~tI~iWn~~G 350 (411)
+.=|+=.--..|+. +-++.+..+|+|+..++|+.. |...-+ -.++-+.-| +-|+.- +++||-|-|.+|
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~---Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS---TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhh---hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 98888766677766 556788999999999999875 332211 123333333 456666 999999999999
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
..|++|..-.--- -.-=+..+||-|+.|-+-..|. ..--++..+||+
T Consensus 425 QvVrsfsSGkREg--GdFi~~~lSpkGewiYcigED~----------vlYCF~~~sG~L 471 (508)
T KOG0275|consen 425 QVVRSFSSGKREG--GDFINAILSPKGEWIYCIGEDG----------VLYCFSVLSGKL 471 (508)
T ss_pred eEEeeeccCCccC--CceEEEEecCCCcEEEEEccCc----------EEEEEEeecCce
Confidence 9999997543310 1223567899999998877776 788888888886
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.6e-05 Score=77.37 Aligned_cols=176 Identities=15% Similarity=0.090 Sum_probs=109.9
Q ss_pred CCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 214 DSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 214 ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
.+.+.|||+.....-+-.. ++.+...+.| ||..|+.....+...-+.+|++.+|+...-+. +-++ +.....++|
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~~---~~~~~~SPD 253 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRH---NGAPAFSPD 253 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCCC---cCCeEECCC
Confidence 4578888887765433223 3478999999 89888876655566778899999997543211 1122 234567777
Q ss_pred ee--EEe-e--cCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEE--ecCCceeeeeccc
Q 015220 292 KL--LVK-Q--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVW--NFRGELVTSFEDH 359 (411)
Q Consensus 292 kl--lIK-Q--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iW--n~~Gel~~s~e~H 359 (411)
+- ++. + +...|.+||+.+++..++... +........+ .+.++- +++...|| |+.|...+.+..+
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~----~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDG----RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCC----CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC
Confidence 64 322 2 345799999999988875322 2222333333 343333 44556676 5554444445443
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.. ......+||||+.|+..+.+. +...|.+||+.+|+.
T Consensus 330 ~~-----~~~~~~~SpDG~~Ia~~~~~~-------g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 330 GS-----QNQDADVSSDGKFMVMVSSNG-------GQQHIAKQDLATGGV 367 (429)
T ss_pred CC-----CccCEEECCCCCEEEEEEccC-------CCceEEEEECCCCCe
Confidence 33 334678999999998766553 234788899999875
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.2e-05 Score=81.75 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=142.9
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeC-----ce--EEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecC
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----YT--MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~-----Ys--~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
|-+=|++=.+=|.-|++.--++.+.||+... |. .+++++++.+..+-= |...|=-----...-+++|||+.|
T Consensus 113 ~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt 191 (910)
T KOG1539|consen 113 HGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRT 191 (910)
T ss_pred ccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEecc
Confidence 3356777788899999999999999999988 44 445555555433321 222211111112446799999999
Q ss_pred CcEEeEeeeccccCCcceeeeeec--ceeEEeecCceeeEEEcccceEEEeeccccCCC-ceEEEEeec----eeEEEE-
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQENENLQILDVRNFELTEVSRTEFMTP-SAFIFLYEN----QLFLTF- 338 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hp-sAfifLy~s----qlFlSf- 338 (411)
|+++++|. ++-..|-.+||.| |=+-|--++..+-|.||+.+|++ ..|-|+ ..+..|..+ -+++++
T Consensus 192 ~K~v~~f~---~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil----~sFk~d~g~VtslSFrtDG~p~las~~ 264 (910)
T KOG1539|consen 192 GKVVYTFQ---EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL----MSFKQDWGRVTSLSFRTDGNPLLASGR 264 (910)
T ss_pred CcEEEEec---ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----EEEEccccceeEEEeccCCCeeEEecc
Confidence 99999965 5558899999998 44556668999999999999998 567787 777777766 567788
Q ss_pred ecCeEEEEecCCceee--eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 339 RNRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 339 sd~tI~iWn~~Gel~~--s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
++|.+.+|||++..+- +.+-|.+ .++.+-.=+-+-++++.++|+ +.+||=.-||
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~nah~~-----sv~~~~fl~~epVl~ta~~Dn----------Slk~~vfD~~ 320 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRNAHYG-----SVTGATFLPGEPVLVTAGADN----------SLKVWVFDSG 320 (910)
T ss_pred CCceEEEEEcCCCeeeeeeeccccC-----CcccceecCCCceEeeccCCC----------ceeEEEeeCC
Confidence 7799999999977554 6677877 778888889999999999999 7777755544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.1e-05 Score=75.67 Aligned_cols=182 Identities=14% Similarity=0.094 Sum_probs=109.0
Q ss_pred CCCCeEEEeecC---CCeEEEEEeeCce--EEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 202 DVNGKVLTYSAQ---DSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 202 d~NGkiLt~~~~---ds~ykVWdL~~Ys--~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
.++|+.|+|... +..+.+||+.+.+ .+....+ ....++.| ||..|++.....+.+-|.+|++.+|++..
T Consensus 212 SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~---- 286 (429)
T PRK01742 212 SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ---- 286 (429)
T ss_pred cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe----
Confidence 468888887654 3579999999875 3444443 34578999 89888877655666667788998887543
Q ss_pred ccccCCcceeeeeecce--eEEee-cCceeeEEEccc--ceEEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecC-
Q 015220 276 LLHRNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRN--FELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR- 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t--~e~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~- 349 (411)
+-++...+.....++++ ++..+ .+...+||++.. ++...+ +... ...-+-...+.++......+.+||+.
T Consensus 287 lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~ 362 (429)
T PRK01742 287 LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMINGDNVVKQDLTS 362 (429)
T ss_pred eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcCCCEEEEECCC
Confidence 33444445556677775 34333 456788888753 433333 1111 10011111133333333456669998
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec--ceee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM--FVTC 409 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~--tGk~ 409 (411)
|+.. .+..+.. ...+..+|||+.|++++.+. .+.+|++. +|++
T Consensus 363 g~~~-~lt~~~~------~~~~~~sPdG~~i~~~s~~g----------~~~~l~~~~~~G~~ 407 (429)
T PRK01742 363 GSTE-VLSSTFL------DESPSISPNGIMIIYSSTQG----------LGKVLQLVSADGRF 407 (429)
T ss_pred CCeE-EecCCCC------CCCceECCCCCEEEEEEcCC----------CceEEEEEECCCCc
Confidence 6543 3333211 24577899999999999875 56666653 4654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00026 Score=80.47 Aligned_cols=205 Identities=15% Similarity=0.152 Sum_probs=135.0
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--C--------------ceeEEEEe-CCEEEEEEecC
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--K--------------NVQEIKIS-PGIMLLIFTKA 253 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~--------------~VqeIkIS-dG~~Lai~q~t 253 (411)
.|.+|+=+-+|..||++.++....+.+.|||+.+ +.+..+-. + .-+.|.+. +|..|.+.+..
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 5799999999999999999999999999999865 44444432 1 24778887 56667777766
Q ss_pred CCceeeEEEEecCCcEEeEeee--cc-----c--------cCCcceeeeeec--ceeEEee-cCceeeEEEcccceEEEe
Q 015220 254 SGHVPLKILSIEDGTVLKSFNH--LL-----H--------RNKKVDFIEQFN--EKLLVKQ-ENENLQILDVRNFELTEV 315 (411)
Q Consensus 254 ~~~ipiKIl~I~tG~~L~t~~~--LL-----~--------h~K~I~FLE~~~--ekllIKQ-e~~~LkI~dL~t~e~~~v 315 (411)
+.+ |.++++.+|++. ++.- .. + -+.|. -+.+.+ +.++|.- +++.|.+||..++....+
T Consensus 645 n~~--Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 645 NHA--LREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred Cce--EEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 654 577888887642 2210 00 0 01222 356664 5667764 789999999988876543
Q ss_pred e--------------ccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-Ccee--e-----------eecccccc---
Q 015220 316 S--------------RTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELV--T-----------SFEDHLLW--- 362 (411)
Q Consensus 316 ~--------------~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~--~-----------s~e~H~~~--- 362 (411)
. .+.|.+|..+.+-... .+|++= .+++|++||++ |... . .|.++.+.
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 2 1245566665554433 588887 67899999998 4421 1 11111000
Q ss_pred CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.....-..|++++||++.|+-+.+. +|.+||..||++.
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~----------rIrviD~~tg~v~ 838 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNH----------KIKKLDPATKRVT 838 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCC----------EEEEEECCCCeEE
Confidence 0011235789999999988876554 9999999998764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-05 Score=77.20 Aligned_cols=168 Identities=10% Similarity=0.050 Sum_probs=105.7
Q ss_pred CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec
Q 015220 214 DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (411)
Q Consensus 214 ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ 290 (411)
++.+.|||+..+.. ..|+. +.+...+.| ||..|+.....+...-|.+|++.+|+...-.. +-++.. ....++
T Consensus 183 ~~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g~~~---~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRGHNG---APAFSP 257 (429)
T ss_pred eEEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCCccC---ceeECC
Confidence 47889999988764 44554 368999999 89888877665666678999999997532111 223332 456677
Q ss_pred ce--eEEee-cCce--eeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC--Cceeeeecc
Q 015220 291 EK--LLVKQ-ENEN--LQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR--GELVTSFED 358 (411)
Q Consensus 291 ek--llIKQ-e~~~--LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~--Gel~~s~e~ 358 (411)
|+ ++... .+.. |-+||+.+++...+.. ++.....+..+ .++++- +++..+||+.+ |...+.+ +
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~----~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTS----GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeecc----CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 65 33332 3444 4555888888776532 33222223322 444444 67889999876 4434433 3
Q ss_pred ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 359 H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|.. .+..+||||+.|+..+.+ .|-+||+.+|++
T Consensus 333 ~~~-------~~~~~SpDG~~ia~~~~~-----------~i~~~Dl~~g~~ 365 (429)
T PRK01742 333 GRG-------YSAQISADGKTLVMINGD-----------NVVKQDLTSGST 365 (429)
T ss_pred CCC-------CCccCCCCCCEEEEEcCC-----------CEEEEECCCCCe
Confidence 332 235689999999887654 355689999875
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.9e-05 Score=82.43 Aligned_cols=222 Identities=20% Similarity=0.264 Sum_probs=140.1
Q ss_pred EEeCCCCceEEEEEeecCCCeEEEEEe------EecCCCceeeeEeee--hhhhhhCCCCCCCcceeecccCCCCeEEee
Q 015220 130 FLNVTADEVIRSLFYNKNNDSLITVSV------YASDNFSSLRCRSTR--IEYIRRGKPDAGFALFESESLKWPGFVEFD 201 (411)
Q Consensus 130 ~lN~s~~evIrsifyN~~n~slI~vSv------~~sd~~s~L~cr~~~--~~~i~~gk~~~~~~LF~~~~l~~PgfvEFD 201 (411)
.|-|...-+|+|+=|.-..+.|..||- +--|.|.-+.|--=. |.++.. -+|-.-.-+ -.||-
T Consensus 208 ~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n---TKGHia~lt-------~g~wh 277 (641)
T KOG0772|consen 208 QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN---TKGHIAELT-------CGCWH 277 (641)
T ss_pred ccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc---cCCceeeee-------ccccc
Confidence 356667779999999999999999883 445666666654333 333332 122111111 24666
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEec-CCcEEeEeeeccccC
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRN 280 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~h~ 280 (411)
.-|-.+...++.|++.|+||+.+.+ ++.|-||--+ ....++|+..+.-. +|+.+...+
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k-------~q~qVik~k~--------~~g~Rv~~tsC~~nrdg~~iAagc------ 336 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTK-------SQLQVIKTKP--------AGGKRVPVTSCAWNRDGKLIAAGC------ 336 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCch-------hheeEEeecc--------CCCcccCceeeecCCCcchhhhcc------
Confidence 6788888999999999999999987 2333333321 11345555555443 455544433
Q ss_pred CcceeeeeecceeEEeecCceeeEEEcccc---eEEEeeccccC--CCceEEEEeeceeEEEE-ecCeEEEEecC--Cce
Q 015220 281 KKVDFIEQFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFM--TPSAFIFLYENQLFLTF-RNRTVAVWNFR--GEL 352 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQe~~~LkI~dL~t~---e~~~v~~T~f~--hpsAfifLy~sqlFlSf-sd~tI~iWn~~--Gel 352 (411)
.+..|||||..+. --++|...--. .-+.+.|-|-.+.+||= -|+++++||++ -++
T Consensus 337 -----------------~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 337 -----------------LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred -----------------cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 3678999998652 22333333221 12344555555788887 89999999999 778
Q ss_pred eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 353 ~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
|-..+|=...-| ..+...|||+++|+.|......+ ..|++-.+|-+|
T Consensus 400 L~~~tgL~t~~~---~tdc~FSPd~kli~TGtS~~~~~----~~g~L~f~d~~t 446 (641)
T KOG0772|consen 400 LNVRTGLPTPFP---GTDCCFSPDDKLILTGTSAPNGM----TAGTLFFFDRMT 446 (641)
T ss_pred hhhhcCCCccCC---CCccccCCCceEEEecccccCCC----CCceEEEEeccc
Confidence 877777555433 23567899999999998875221 226676666555
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.9e-05 Score=75.40 Aligned_cols=229 Identities=13% Similarity=0.156 Sum_probs=143.9
Q ss_pred cEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeee-hhhhhhCCCCCCCc---ceeecccCCCCeE--E
Q 015220 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR-IEYIRRGKPDAGFA---LFESESLKWPGFV--E 199 (411)
Q Consensus 126 ~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~-~~~i~~gk~~~~~~---LF~~~~l~~Pgfv--E 199 (411)
++.|+---++...||++=|..+-.-+-+-|-- -.++.-+-| ..++|.+---+-.| ||..-. -|-|-+ .
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~lyavgsns-----kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~k-hhkgsiyc~ 95 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGGLYAVGSNS-----KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNK-HHKGSIYCT 95 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCceEEeccCC-----ceEEEEccccccCcccccccccCCCeEEeeecc-ccCccEEEE
Confidence 44454334677788888777655544332211 223322222 44555543322222 333211 122222 1
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
-=-+.|+.++.++.|+++||--+++-++-. ++++ +| ++.++|++
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~--~g~d-le-----------------------~nmhdgti---------- 139 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNA--TGHD-LE-----------------------FNMHDGTI---------- 139 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccccc--cCcc-ee-----------------------eeecCCce----------
Confidence 124678888989999999987776654321 1111 22 33444443
Q ss_pred CCcceeeeeeccee-EEee---cCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecC-Cc
Q 015220 280 NKKVDFIEQFNEKL-LVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 280 ~K~I~FLE~~~ekl-lIKQ---e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~-Ge 351 (411)
.++-||+-...+= ++++ ++-||-|-|..+|+.+. .+-+|.--+++||.= -.|+++ +|.|||+||++ ..
T Consensus 140 -rdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~---a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 140 -RDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH---ALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred -eeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce---eecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc
Confidence 2344555444333 5555 45688899999999999 888999999999954 789999 99999999999 66
Q ss_pred eeeeecc--ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~--H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|+++.. |-.--..-.+..|++.|.|.+|+||-+|. +--++||.-|..+
T Consensus 216 ~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds----------sc~lydirg~r~i 266 (350)
T KOG0641|consen 216 CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS----------SCMLYDIRGGRMI 266 (350)
T ss_pred eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC----------ceEEEEeeCCcee
Confidence 6665532 22211223678899999999999999998 8889999888764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00016 Score=73.00 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=105.7
Q ss_pred CCeEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec
Q 015220 214 DSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (411)
Q Consensus 214 ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ 290 (411)
.+.+.|||+.+... ..|+ ++.+...+.| ||..|+.....+...-|.+|++.+|+...-.. ..........++
T Consensus 183 ~~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~----~~g~~~~~~~Sp 257 (433)
T PRK04922 183 RYALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS----FRGINGAPSFSP 257 (433)
T ss_pred eEEEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc----CCCCccCceECC
Confidence 35678899865543 3344 2368888999 88888877666666778899999998744211 111223456666
Q ss_pred ce--eEE-ee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCe--EEEEecC-Cceee-eeccc
Q 015220 291 EK--LLV-KQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRT--VAVWNFR-GELVT-SFEDH 359 (411)
Q Consensus 291 ek--llI-KQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~t--I~iWn~~-Gel~~-s~e~H 359 (411)
++ +++ .+ ++..|.+||+.+++...+.... .....+.|-... +++++- +++. |-++++. |+..+ +++++
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 65 332 23 3457999999999987653211 111122222222 333332 3444 4455666 44332 34432
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
. ..++.+||||+.|+-.+.+. +...|.+||+.+|+..
T Consensus 337 ~-------~~~~~~SpDG~~Ia~~~~~~-------~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 337 Y-------NARASVSPDGKKIAMVHGSG-------GQYRIAVMDLSTGSVR 373 (433)
T ss_pred C-------ccCEEECCCCCEEEEEECCC-------CceeEEEEECCCCCeE
Confidence 2 23588999999988765432 2347999999998753
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-06 Score=94.25 Aligned_cols=117 Identities=9% Similarity=0.128 Sum_probs=104.6
Q ss_pred ccccCCcceeeeeecceeEEeec--CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
|-+|..||+.+-...+.-||+-+ +..||+|||-.++..+ |+++|..-..-|+.+ +.|+++ .|.-+.+||-+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceEEeccccccccceehhhh
Confidence 66899999999999888877764 4479999999999888 999999999999876 677888 88999999999
Q ss_pred -CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 -Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
--+.-++.+|-. .++.+..||||.++.+|..|. +++|||+.-||++
T Consensus 143 k~Gc~~~~~s~~~-----vv~~l~lsP~Gr~v~~g~ed~----------tvki~d~~agk~~ 189 (825)
T KOG0267|consen 143 KKGCSHTYKSHTR-----VVDVLRLSPDGRWVASGGEDN----------TVKIWDLTAGKLS 189 (825)
T ss_pred ccCceeeecCCcc-----eeEEEeecCCCceeeccCCcc----------eeeeecccccccc
Confidence 567788999998 999999999999999999988 9999999999875
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=87.91 Aligned_cols=181 Identities=11% Similarity=0.085 Sum_probs=129.7
Q ss_pred CCCeEEEeecCCCeEEEEEeeCce----------EEEE-eccC-ceeEEEEeC------CEEEE-EEecCCCceeeEEEE
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYT----------MLYS-ISDK-NVQEIKISP------GIMLL-IFTKASGHVPLKILS 263 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys----------~iys-Ls~~-~VqeIkISd------G~~La-i~q~t~~~ipiKIl~ 263 (411)
.+||-|+..++|+.+|||-...-+ ++|. +.++ ++..+..++ ..+.- ..+.+....|.|++.
T Consensus 277 ~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~ 356 (712)
T KOG0283|consen 277 HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFV 356 (712)
T ss_pred CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcccc
Confidence 689999999999999999998822 1211 1111 122222221 11111 112222466777766
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf 338 (411)
++. +++.. +.||..+|==|-=+-.+. |=.+-+...++|++.+.++.+ .|-|+.-|.|++.+ ..|+||
T Consensus 357 f~e-kP~~e---f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 357 FSE-KPFCE---FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccc-cchhh---hhccchhheecccccCCeeEeccccccEEeecCCCcceee----EEecCCeeEEEEecccCCCcEeec
Confidence 653 44454 779988886677676666 556689999999999999997 59999999999988 789999
Q ss_pred -ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 339 -RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 339 -sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
=|+++|||+.-..-|.--+|=.- -+.+|..+|||+..|-|+=.- ...+++..-
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~~-----lITAvcy~PdGk~avIGt~~G----------~C~fY~t~~ 482 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLRD-----LITAVCYSPDGKGAVIGTFNG----------YCRFYDTEG 482 (712)
T ss_pred ccccceEEeecCcCeeEeehhhhh-----hheeEEeccCCceEEEEEecc----------EEEEEEccC
Confidence 89999999999887775555444 689999999999999998763 666666543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00022 Score=79.34 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=140.9
Q ss_pred eeeEeeehhhhhhCCCCCCCc--ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEE
Q 015220 165 LRCRSTRIEYIRRGKPDAGFA--LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIK 240 (411)
Q Consensus 165 L~cr~~~~~~i~~gk~~~~~~--LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIk 240 (411)
.=|-.+....+.+-+++++.+ +-. ++.-|-=+-==+.+|+-++..++|=.+||=++.+.+...++..+ .|..+.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~--Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILA--RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceee--eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 444455555666655555432 111 11112222222578999999999999999999999988888855 899999
Q ss_pred Ee-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceee--------eeecc--eeEEeecCceeeEEEccc
Q 015220 241 IS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI--------EQFNE--KLLVKQENENLQILDVRN 309 (411)
Q Consensus 241 IS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FL--------E~~~e--kllIKQe~~~LkI~dL~t 309 (411)
.. .|.|||+..+..+ ++||+|++|++.+++.- -.|.-+|+ .-+++ .+++..-++-+++|+-.+
T Consensus 146 ~~p~~~fLAvss~dG~---v~iw~~~~~~~~~tl~~---v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGK---VQIWDLQDGILSKTLTG---VDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred EcCCCCEEEEEecCce---EEEEEcccchhhhhccc---CCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 99 8999999999865 79999999999998553 23333333 44444 568888999999999999
Q ss_pred ceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-------CceeeeeccccccCCCCccceE
Q 015220 310 FELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNI 371 (411)
Q Consensus 310 ~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-------Gel~~s~e~H~~~~~~c~~n~i 371 (411)
.+..-.-++.+ +.+-|..+.-+ +..++. .||.|.|||.+ ++.++- +.|+|+|+.-++
T Consensus 220 we~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~----~aw~p~~n~it~ 287 (933)
T KOG1274|consen 220 WELQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCC----EAWKPNANAITL 287 (933)
T ss_pred ceeheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEE----EecCCCCCeeEE
Confidence 99888777776 44448888877 556655 99999999998 333333 479999997664
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-05 Score=80.57 Aligned_cols=191 Identities=13% Similarity=0.163 Sum_probs=127.5
Q ss_pred CCCCeEEEeecCCCeEEEEEeeC--ceEE--EEeccCceeEEEEe-CCEEEEE-------E-ec-------CCCceeeEE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKN--YTML--YSISDKNVQEIKIS-PGIMLLI-------F-TK-------ASGHVPLKI 261 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~--Ys~i--ysLs~~~VqeIkIS-dG~~Lai-------~-q~-------t~~~ipiKI 261 (411)
-|+|--+.+..+|.+.++|+|-. |+.= +-+.-+.+.++++- ++.++.- + || +.-.-||++
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~ 137 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHL 137 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceee
Confidence 37899999999999999999853 2211 11122245555555 3322210 0 11 223569999
Q ss_pred EEecCCcEEeEeeeccccCCcce---eeeeeccee-EEeecCceeeEEEc-ccceEEEeeccccC----CCceEEE----
Q 015220 262 LSIEDGTVLKSFNHLLHRNKKVD---FIEQFNEKL-LVKQENENLQILDV-RNFELTEVSRTEFM----TPSAFIF---- 328 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K~I~---FLE~~~ekl-lIKQe~~~LkI~dL-~t~e~~~v~~T~f~----hpsAfif---- 328 (411)
||..||++-.++. -.-|.-++. .|.-++|+- |++--+..|++.|+ +.|.--.|-.|.+- ...-..+
T Consensus 138 wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~s 216 (406)
T KOG2919|consen 138 WDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFS 216 (406)
T ss_pred eeccccccccchh-hhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeecc
Confidence 9999999988755 223444443 467778776 88888999999999 55554444334331 1111111
Q ss_pred -----------------Ee-----------------ec--------eeEEEE--ecCeEEEEecC--Cceeeeecccccc
Q 015220 329 -----------------LY-----------------EN--------QLFLTF--RNRTVAVWNFR--GELVTSFEDHLLW 362 (411)
Q Consensus 329 -----------------Ly-----------------~s--------qlFlSf--sd~tI~iWn~~--Gel~~s~e~H~~~ 362 (411)
+| +. +-|+++ .|.+|..||.| +++|-.|++|..
T Consensus 217 P~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~- 295 (406)
T KOG2919|consen 217 PMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG- 295 (406)
T ss_pred CCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc-
Confidence 11 01 236677 68899999999 999999999999
Q ss_pred CCCCccce--EE-EcCCCCEEEEEecCCCCCccccCCceEEEeeecc-ee
Q 015220 363 HPDCNTNN--IY-ITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF-VT 408 (411)
Q Consensus 363 ~~~c~~n~--i~-Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t-Gk 408 (411)
+||. .| +-|+|++|+||.+|- .|++||+++ |.
T Consensus 296 ----~TNQRI~FDld~~~~~LasG~tdG----------~V~vwdlk~~gn 331 (406)
T KOG2919|consen 296 ----DTNQRILFDLDPKGEILASGDTDG----------SVRVWDLKDLGN 331 (406)
T ss_pred ----CccceEEEecCCCCceeeccCCCc----------cEEEEecCCCCC
Confidence 5553 32 689999999999985 999999988 54
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.5e-05 Score=75.60 Aligned_cols=185 Identities=14% Similarity=0.200 Sum_probs=119.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCce-----EE-EEeccCceeEEEEe-CCEEEEEEecCCCceee-EEEEecCCcEEeEee
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYT-----ML-YSISDKNVQEIKIS-PGIMLLIFTKASGHVPL-KILSIEDGTVLKSFN 274 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys-----~i-ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipi-KIl~I~tG~~L~t~~ 274 (411)
.|||-|+..+.|.++|||++++++ +| ..+.-+.-..|+.+ |---+.+.-...+.+++ |+-.=++|..-+++.
T Consensus 96 SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v 175 (420)
T KOG2096|consen 96 SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFV 175 (420)
T ss_pred CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccc
Confidence 689999999999999999999976 23 34444466677777 32222233333344443 333345677766665
Q ss_pred ec----cc--cCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEE-EEeeceeEEEEec--CeE
Q 015220 275 HL----LH--RNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFI-FLYENQLFLTFRN--RTV 343 (411)
Q Consensus 275 ~L----L~--h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfi-fLy~sqlFlSfsd--~tI 343 (411)
+. ++ |+-++.-+-+-+..- +-++++.+|-|||++ |+...--+|.- .+-.. +|--..-|+..+- --+
T Consensus 176 ~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--~~n~~aavSP~GRFia~~gFTpDV 252 (420)
T KOG2096|consen 176 HIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--SSNYDAAVSPDGRFIAVSGFTPDV 252 (420)
T ss_pred cccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc--ccccceeeCCCCcEEEEecCCCCc
Confidence 22 33 344444455555544 556699999999999 77665111211 11111 1222255655533 247
Q ss_pred EEEecC----Cc-----eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 344 AVWNFR----GE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 344 ~iWn~~----Ge-----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.||.+= |+ .+-+|.||+. .+-..+.|++-.-+++.|||- +++|||+-
T Consensus 253 kVwE~~f~kdG~fqev~rvf~LkGH~s-----aV~~~aFsn~S~r~vtvSkDG----------~wriwdtd 308 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQEVKRVFSLKGHQS-----AVLAAAFSNSSTRAVTVSKDG----------KWRIWDTD 308 (420)
T ss_pred eEEEEEeccCcchhhhhhhheeccchh-----heeeeeeCCCcceeEEEecCC----------cEEEeecc
Confidence 788753 55 4559999999 999999999999999999996 99999973
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.6e-05 Score=84.07 Aligned_cols=158 Identities=18% Similarity=0.267 Sum_probs=114.0
Q ss_pred cccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCceEE--EEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 190 ESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 190 ~~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
....||+|| +|-++|.+-.++++=|+-+|+|++.+-+-. +.| ++=|.++..+ ||+..+++.-+. +..+++
T Consensus 404 ~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G---~C~fY~ 479 (712)
T KOG0283|consen 404 KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNG---YCRFYD 479 (712)
T ss_pred eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEecc---EEEEEE
Confidence 345788885 899999999999999999999999887755 222 2577888888 999988887664 567888
Q ss_pred ecCCcEEeEeeeccccCCcc--------eeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeE
Q 015220 264 IEDGTVLKSFNHLLHRNKKV--------DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF 335 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I--------~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlF 335 (411)
.++=++..++-..++++|++ ||.-+.++.+|+-+++++|+|||++.
T Consensus 480 t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-------------------------- 533 (712)
T KOG0283|consen 480 TEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-------------------------- 533 (712)
T ss_pred ccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--------------------------
Confidence 88888888777666655543 33333344444444444444444444
Q ss_pred EEEecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 336 LTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 336 lSfsd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
=+|+.-|-|+.. .+.-.....|+||+.|||+|.|. -+.||++
T Consensus 534 --------------~~lv~KfKG~~n---~~SQ~~Asfs~Dgk~IVs~seDs----------~VYiW~~ 575 (712)
T KOG0283|consen 534 --------------KDLVHKFKGFRN---TSSQISASFSSDGKHIVSASEDS----------WVYIWKN 575 (712)
T ss_pred --------------hhhhhhhccccc---CCcceeeeEccCCCEEEEeecCc----------eEEEEeC
Confidence 445555666555 33446688999999999999888 8999997
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=82.21 Aligned_cols=180 Identities=13% Similarity=0.195 Sum_probs=129.1
Q ss_pred EEEeecCCCeEEEEEeeCceEEEEeccCc--eeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcce
Q 015220 207 VLTYSAQDSIYKVFDLKNYTMLYSISDKN--VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Ys~iysLs~~~--VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~ 284 (411)
.+++++-|+.+|+|||..=.++.++..++ |.-|.++.+-|+-++|.. -+|.|.++- .++++ .|+- ..+.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDK----tvK~wk~~~-~p~~t---ilg~-s~~~ 151 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDK----TVKQWKIDG-PPLHT---ILGK-SVYL 151 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCc----ceeeeeccC-Cccee---eecc-cccc
Confidence 46778889999999999999999999884 999999988887777765 478888765 57776 3332 2333
Q ss_pred eeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCc--eEEEEe-eceeEEEE-ecCeEEEEecC-Cceeeee---
Q 015220 285 FIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS--AFIFLY-ENQLFLTF-RNRTVAVWNFR-GELVTSF--- 356 (411)
Q Consensus 285 FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps--AfifLy-~sqlFlSf-sd~tI~iWn~~-Gel~~s~--- 356 (411)
=|--+-..=..+..|+.|-|||...-.+..= -.|+.++ .+-|=+ +..++.+. +|++|-++|++ +.+++..
T Consensus 152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~s--mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~ 229 (433)
T KOG0268|consen 152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSS--MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT 229 (433)
T ss_pred ccccccccccccccCceeeecccccCCccce--eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee
Confidence 3333444447889999999999988777662 2344442 222222 33667777 99999999999 8877633
Q ss_pred -------------------ccccccCCCC---------------ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 357 -------------------EDHLLWHPDC---------------NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 357 -------------------e~H~~~~~~c---------------~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
|||-+|.-|- .+-.|.-||.|+-++|||=|+ ||.|+
T Consensus 230 mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk----------sIRIf 299 (433)
T KOG0268|consen 230 MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK----------SIRIF 299 (433)
T ss_pred ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc----------eEEEe
Confidence 3333322111 455788899999999999999 99999
Q ss_pred eecce
Q 015220 403 LLMFV 407 (411)
Q Consensus 403 ~i~tG 407 (411)
..--|
T Consensus 300 ~~~~~ 304 (433)
T KOG0268|consen 300 PVNHG 304 (433)
T ss_pred ecCCC
Confidence 76554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.011 Score=58.35 Aligned_cols=206 Identities=11% Similarity=0.106 Sum_probs=132.6
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC-ceEEE---Eec------------cCceeEEEEe-CCEEEEEEecCCC
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLY---SIS------------DKNVQEIKIS-PGIMLLIFTKASG 255 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iy---sLs------------~~~VqeIkIS-dG~~Lai~q~t~~ 255 (411)
..|-++.+|+....+++++-.++++-|+++.. .++-. .+. ..+.+.+.++ ||.+|++.+--..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 56899999999999999999999999999988 33222 221 2277899999 8888888887777
Q ss_pred ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc--eeEEe-ecCceeeEEEcc--cceEEEe--eccc---cC---C
Q 015220 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--KLLVK-QENENLQILDVR--NFELTEV--SRTE---FM---T 322 (411)
Q Consensus 256 ~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e--kllIK-Qe~~~LkI~dL~--t~e~~~v--~~T~---f~---h 322 (411)
++.+-=++=++|++...-..-++.-.-..-|..+++ .+++. +.++.|-++++. +++...+ -.|+ +. .
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 655444444455564422234566666777888888 45444 567889999999 5544431 1122 11 2
Q ss_pred CceEEEEe-eceeEEEE-ecCeEEEEecC---CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 323 PSAFIFLY-ENQLFLTF-RNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 323 psAfifLy-~sqlFlSf-sd~tI~iWn~~---Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
|+++.+-. .+.+|++= .+++|.+++++ |.|.. .+... ...-.-..+.++|||++|+.++.+. +
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~--~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s---------~ 314 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL--VQTVP-TGGKFPRHFAFSPDGRYLYVANQDS---------N 314 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE--EEEEE-ESSSSEEEEEE-TTSSEEEEEETTT---------T
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE--EEEEe-CCCCCccEEEEeCCCCEEEEEecCC---------C
Confidence 33332221 22677777 77899999995 44432 11111 0011247899999999999988664 4
Q ss_pred eEEEeee--cceeee
Q 015220 398 KLFVSLL--MFVTCK 410 (411)
Q Consensus 398 tI~i~~i--~tGk~~ 410 (411)
+|.++++ .||++.
T Consensus 315 ~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEEEETTTTEEE
T ss_pred eEEEEEEeCCCCcEE
Confidence 8998877 688864
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.8e-05 Score=75.04 Aligned_cols=183 Identities=14% Similarity=0.153 Sum_probs=137.4
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
..+|..|+.++.++.+-+||+-|...-..|++| -|+.+.-| ||.+|+++..-. .+++||+-.|.+++.+.+
T Consensus 32 s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~---si~lwDl~~gs~l~rirf--- 105 (405)
T KOG1273|consen 32 SRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW---SIKLWDLLKGSPLKRIRF--- 105 (405)
T ss_pred ccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc---eeEEEeccCCCceeEEEc---
Confidence 468999999999999999999999988889988 89999999 999999988776 479999999999998664
Q ss_pred cCCcceeeeeeccee---EEeecCceeeEEEcccceEEEeeccccCC--CceEEEEeec--eeEEEE-ecCeEEEEecC-
Q 015220 279 RNKKVDFIEQFNEKL---LVKQENENLQILDVRNFELTEVSRTEFMT--PSAFIFLYEN--QLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 279 h~K~I~FLE~~~ekl---lIKQe~~~LkI~dL~t~e~~~v~~T~f~h--psAfifLy~s--qlFlSf-sd~tI~iWn~~- 349 (411)
..||-+..-++-+. +.-+=.+.=.+.++..+.-..+|..-.+. .+|=.-++.. ++-+|+ +.|++.|+|.+
T Consensus 106 -~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred -cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 35666666665544 33333333555566554444433322111 1111112222 778888 99999999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
-+.+.+|.--. -.+++.|..+--|+.++--|.|+ .|..+++.
T Consensus 185 ~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDR----------vIR~ye~~ 226 (405)
T KOG1273|consen 185 LECVASFRITS----VQAIKQIIVSRKGRFLIINTSDR----------VIRTYEIS 226 (405)
T ss_pred heeeeeeeech----heeeeEEEEeccCcEEEEecCCc----------eEEEEehh
Confidence 88888876555 24899999999999999999999 88888875
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.7e-05 Score=82.20 Aligned_cols=176 Identities=12% Similarity=0.145 Sum_probs=112.4
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEE--eccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEec--------------
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYS--ISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIE-------------- 265 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iys--Ls~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~-------------- 265 (411)
-.|+.-+.|+++|+||+++.++.-. .-++ -|..+.+. |--+++++-... .++|||+-
T Consensus 113 ~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg---~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 113 SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDG---EILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCC---cEEEEEEeccchhhHHHHhhhh
Confidence 3566677799999999999998744 3333 45555444 333333332222 24566653
Q ss_pred ----CC--cEEeEee----eccccCCccee---eeeecceeEEeec---CceeeEEEcccce------EEEeeccccCC-
Q 015220 266 ----DG--TVLKSFN----HLLHRNKKVDF---IEQFNEKLLVKQE---NENLQILDVRNFE------LTEVSRTEFMT- 322 (411)
Q Consensus 266 ----tG--~~L~t~~----~LL~h~K~I~F---LE~~~ekllIKQe---~~~LkI~dL~t~e------~~~v~~T~f~h- 322 (411)
+| ++.+..+ --+.+++-|+- .-.|-|..+|++. +.-||+|||++.. +..+.....-.
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK 269 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence 33 1221111 13455666666 6778888878774 5699999999843 33322222210
Q ss_pred -CceEEEEe--e--ceeEEEEecCeEEEEecCCc---eeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 323 -PSAFIFLY--E--NQLFLTFRNRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 323 -psAfifLy--~--sqlFlSfsd~tI~iWn~~Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.-.|+.|- - +.||++-.|++|-.||..+. ++..|.+|+. ....+.=-+|||+..|.||+-|.
T Consensus 270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~---~sf~vks~lSpd~~~l~SgSsd~ 339 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN---SSFYVKSELSPDDCSLLSGSSDE 339 (720)
T ss_pred ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc---ceeeeeeecCCCCceEeccCCCc
Confidence 12244433 2 37888889999999999965 7888999887 23455566899999999999998
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.9e-05 Score=79.83 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=136.8
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe---CCEEEEEEecCC--------C--------------
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS---PGIMLLIFTKAS--------G-------------- 255 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS---dG~~Lai~q~t~--------~-------------- 255 (411)
|+.|.-|++++.|++.|||-+.|.-+|+... |.+|+.|..+ +--+||+.-... .
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~ 488 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLAS 488 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhc
Confidence 3489999999999999999999999999887 6689988887 334455544333 0
Q ss_pred ----ce---eeEEEEecCC-cEEeEeeeccccCCcceeeeeecceeEEe-----ecCceeeEEEcccceEEEeeccccCC
Q 015220 256 ----HV---PLKILSIEDG-TVLKSFNHLLHRNKKVDFIEQFNEKLLVK-----QENENLQILDVRNFELTEVSRTEFMT 322 (411)
Q Consensus 256 ----~i---piKIl~I~tG-~~L~t~~~LL~h~K~I~FLE~~~ekllIK-----Qe~~~LkI~dL~t~e~~~v~~T~f~h 322 (411)
-- -+-.|+=..- +..+..+..+.|-|+|.-|+-|..+=+++ +++..+.|++|.++...+--+--.++
T Consensus 489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~ 568 (733)
T KOG0650|consen 489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGL 568 (733)
T ss_pred CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCc
Confidence 00 0112322200 11112334567889999999887665554 47789999999988777522234567
Q ss_pred CceEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEE
Q 015220 323 PSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFV 401 (411)
Q Consensus 323 psAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i 401 (411)
+.++.|=-.+-.||.-.-+.|+||||- ++||..|.--.- -+.+++|.|.||-||.|+.|+ .+-.
T Consensus 569 vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~k-----wiS~msihp~GDnli~gs~d~----------k~~W 633 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSK-----WISSMSIHPNGDNLILGSYDK----------KMCW 633 (733)
T ss_pred eeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCe-----eeeeeeecCCCCeEEEecCCC----------eeEE
Confidence 777777777777777788999999999 999986655444 367999999999999999998 7766
Q ss_pred eeec
Q 015220 402 SLLM 405 (411)
Q Consensus 402 ~~i~ 405 (411)
+|+.
T Consensus 634 fDld 637 (733)
T KOG0650|consen 634 FDLD 637 (733)
T ss_pred EEcc
Confidence 6664
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=82.19 Aligned_cols=204 Identities=11% Similarity=0.084 Sum_probs=147.1
Q ss_pred CcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC------------------ceEEEEeccC--ceeEEEEe-
Q 015220 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------------------YTMLYSISDK--NVQEIKIS- 242 (411)
Q Consensus 184 ~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~------------------Ys~iysLs~~--~VqeIkIS- 242 (411)
..|++-..-.-+.---+=-+||+-|+++++|..+-||.+.. |+..+.+..| +|+++.-|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 34555433333333333468999999999999999999993 4466666655 99999999
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEccc-----------
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRN----------- 309 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t----------- 309 (411)
|+.+|+...-.+ .+-||+..|++.++. +=+|+..|-=+-.-|-+.++++ .++.||||+..+
T Consensus 140 ~~~~lvS~s~Dn---sViiwn~~tF~~~~v---l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 140 DDSLLVSVSLDN---SVIIWNAKTFELLKV---LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred CccEEEEecccc---eEEEEccccceeeee---eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 888887766544 577999999999998 6688888888888887777765 889999999544
Q ss_pred --------------------------------------ceEEEeeccccCCCceEEEEeec--------e----------
Q 015220 310 --------------------------------------FELTEVSRTEFMTPSAFIFLYEN--------Q---------- 333 (411)
Q Consensus 310 --------------------------------------~e~~~v~~T~f~hpsAfifLy~s--------q---------- 333 (411)
++.+.+..++-+|..+..++..| +
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 12223444555677777776644 3
Q ss_pred --eEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 334 --LFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 334 --lFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+..++ +|++|.||+.- --|+ |-=|.+ -+-.+.-+.=||||-.|+-+|-|- ||.+.+++-+
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl--~vi~~l--f~~SI~DmsWspdG~~LfacS~DG----------tV~~i~Fee~ 357 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPL--FVIHNL--FNKSIVDMSWSPDGFSLFACSLDG----------TVALIHFEEK 357 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCch--hhhhhh--hcCceeeeeEcCCCCeEEEEecCC----------eEEEEEcchH
Confidence 55677 99999999994 2222 233333 123567788899999999999996 8888877643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00052 Score=70.51 Aligned_cols=224 Identities=15% Similarity=0.201 Sum_probs=167.3
Q ss_pred EeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC-----CcceeecccCCCCeEEeeCCCCeEEEeecCCCeE
Q 015220 143 FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-----FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (411)
Q Consensus 143 fyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~-----~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~y 217 (411)
|+| .|..-...|+-.+|.|.-.+|-...- -+..+.+ --||.+--+ +++.-.|....
T Consensus 10 ~~~-~Nqd~~~lsvGs~~Gyk~~~~~~~~k----~~~~~~~~~~IvEmLFSSSLv--------------aiV~~~qpr~L 70 (391)
T KOG2110|consen 10 FIG-FNQDSTLLSVGSKDGYKIFSCSPFEK----CFSKDTEGVSIVEMLFSSSLV--------------AIVSIKQPRKL 70 (391)
T ss_pred eee-eccceeEEEccCCCceeEEecCchHH----hhcccCCCeEEEEeeccccee--------------EEEecCCCceE
Confidence 444 55566677888888877666665532 1111112 136665322 34444555788
Q ss_pred EEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE
Q 015220 218 KVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV 295 (411)
Q Consensus 218 kVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI 295 (411)
||-+.|--+-|=.+. ...|..||+- +.+++++-.. |-|+||.|=++|+|+.--=++-+-+..+-..+++=++
T Consensus 71 kv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~------IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES------IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred EEEEcccCceEEEEecCCceEEEEEccceEEEEEccc------EEEEecccceeehhhhccCCCccceEeeccCCCCceE
Confidence 999999888887776 5699999999 6665554432 7789999999999977433455668999999997777
Q ss_pred ee----cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEEecC--eEEEEecC-CceeeeeccccccCCC
Q 015220 296 KQ----ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTFRNR--TVAVWNFR-GELVTSFEDHLLWHPD 365 (411)
Q Consensus 296 KQ----e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSfsd~--tI~iWn~~-Gel~~s~e~H~~~~~~ 365 (411)
+= ...-+.|||+-+=+... +.-.|....-+|+.+ .+++|.|++ -|||+... |+++..|-.=.. -
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~---~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~ 218 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVN---TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---P 218 (391)
T ss_pred EecCCCCCceEEEEEcccceeee---EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---e
Confidence 65 45679999999988887 666899999999998 789999655 78999988 999998876444 5
Q ss_pred CccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 366 c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|++-++.-+||+++|.+-|.-+ ||+|+-|++-
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~Te----------TVHiFKL~~~ 250 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTE----------TVHIFKLEKV 250 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCC----------eEEEEEeccc
Confidence 8999999999999999888776 9999988753
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00068 Score=68.53 Aligned_cols=173 Identities=14% Similarity=0.030 Sum_probs=106.7
Q ss_pred CeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 215 SIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
+.+.+||+.+... ..|+. +.+...+.| ||..|+.....+...-|.+|++.+|+...- -.....+.....++|
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l----~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV----GNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe----ecCCCcccCcEECCC
Confidence 4666777755543 44543 379999999 898888877666677899999999987431 223334455666766
Q ss_pred ee--EEe-ec--CceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecC--eEEEEecCCceeeeeccc
Q 015220 292 KL--LVK-QE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNR--TVAVWNFRGELVTSFEDH 359 (411)
Q Consensus 292 kl--lIK-Qe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~--tI~iWn~~Gel~~s~e~H 359 (411)
+- ++. +. +..|-+||+.+++...+.. ++........+ .+.++- +++ .|-+||++|.-++.+..+
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~----~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~ 332 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD----SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG 332 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccC----CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC
Confidence 63 222 33 3457777999998876522 33222222222 333322 333 577788886655655544
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.. .......||||+.|+..+.+. +...|-+||+.+|+
T Consensus 333 ~~-----~~~~~~~SpdG~~ia~~~~~~-------~~~~i~~~d~~~~~ 369 (435)
T PRK05137 333 GG-----RYSTPVWSPRGDLIAFTKQGG-------GQFSIGVMKPDGSG 369 (435)
T ss_pred CC-----cccCeEECCCCCEEEEEEcCC-------CceEEEEEECCCCc
Confidence 33 345678999999998766432 12367788876553
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00047 Score=67.58 Aligned_cols=177 Identities=15% Similarity=0.045 Sum_probs=108.7
Q ss_pred CeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 215 SIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
+.+-++|.... ....|++. .+...+.| ||..|+.........-|.+|++.+|+...-. .+...+.....+++
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~----~~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA----SFPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee----cCCCCccceEECCC
Confidence 34556666433 34445544 48888899 8988888776666677999999999765432 22233444666776
Q ss_pred e--eEEe-e--cCceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-ecC--eEEEEecCCceeeeecccccc
Q 015220 292 K--LLVK-Q--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-RNR--TVAVWNFRGELVTSFEDHLLW 362 (411)
Q Consensus 292 k--llIK-Q--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-sd~--tI~iWn~~Gel~~s~e~H~~~ 362 (411)
+ +++. . +...|.+||+.+++...+...... .....|.. .++++++. +++ .|-+|++.+.-.+.+..+..
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~- 322 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGI-DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG- 322 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-
Confidence 5 3332 2 345699999999887765321110 11111222 23454443 333 57777887444444544433
Q ss_pred CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
....+.+||||+.|+..+.+. +...|.++|+.+|+.
T Consensus 323 ----~~~~~~~spdg~~i~~~~~~~-------~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 323 ----YNASPSWSPDGDLIAFVHREG-------GGFNIAVMDLDGGGE 358 (417)
T ss_pred ----CccCeEECCCCCEEEEEEccC-------CceEEEEEeCCCCCe
Confidence 345678999999999887663 446899999988754
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.7e-05 Score=80.57 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=102.7
Q ss_pred CCEEEEEEecCCCceeeEEEEec-CCcEEeEeeeccccCCcceeee--eecceeEEee--cCceeeEEEcccceEEE---
Q 015220 243 PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQ--ENENLQILDVRNFELTE--- 314 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~h~K~I~FLE--~~~ekllIKQ--e~~~LkI~dL~t~e~~~--- 314 (411)
+..|||+--....--...|+-|+ +|++-+..-..=||+.+|==+. .|||.. |++ |+.+++||.+-.+-+..
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~v-IASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCV-IASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCce-eecCCCCceEEEEECCCcccccCcc
Confidence 44455555555544444444443 6766665555557777664333 355554 555 78899999886543332
Q ss_pred -eeccccCCCceEEEEe-----eceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 315 -VSRTEFMTPSAFIFLY-----ENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 315 -v~~T~f~hpsAfifLy-----~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
=-..+.+|..-+=-++ .|=|+-+++|++|-+||.. |+-+-++. |-. -+-++-.+.||.++++.|+|+
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd-----~i~S~sfn~dGs~l~TtckDK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPD-----MVYSMSFNRDGSLLCTTCKDK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCC-----eEEEEEeccCCceeeeecccc
Confidence 1114555555443333 3344555599999999999 99777776 666 788999999999999999999
Q ss_pred CCCccccCCceEEEeeecceeee
Q 015220 388 SDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 388 ~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|.|||..+|+++
T Consensus 196 ----------kvRv~dpr~~~~v 208 (472)
T KOG0303|consen 196 ----------KVRVIDPRRGTVV 208 (472)
T ss_pred ----------eeEEEcCCCCcEe
Confidence 9999999999975
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-05 Score=84.79 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=120.0
Q ss_pred CCCeEEEeec--CCCeEEEEEeeC-c-----------eEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec
Q 015220 203 VNGKVLTYSA--QDSIYKVFDLKN-Y-----------TMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 203 ~NGkiLt~~~--~ds~ykVWdL~~-Y-----------s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
++|+-++.++ .|+..+||++.. + +++-+..++ -|.=||.| ||+.||++.-. --+.||.-.
T Consensus 23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD---~~v~iW~~~ 99 (942)
T KOG0973|consen 23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD---RLVMIWERA 99 (942)
T ss_pred CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc---ceEEEeeec
Confidence 5677778888 688999999876 2 234455555 78889999 99999988765 345677776
Q ss_pred CCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecC
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNR 341 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~ 341 (411)
. ....+ ..|.+... .+-|.+++-.++=+|+.-+.=|..+ .+|+|. -|+
T Consensus 100 ~-~~~~~---~fgs~g~~------------------------~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 100 E-IGSGT---VFGSTGGA------------------------KNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred c-cCCcc---cccccccc------------------------cccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 5 22222 22222111 1335555555666788888888777 888898 899
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+|-|||-+ .++++.++||++ -++-+.+.|-|+++.|=+-|+ ||+||.+.+
T Consensus 152 sViiwn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDr----------tikvwrt~d 202 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDR----------TLKVWRTSD 202 (942)
T ss_pred eEEEEccccceeeeeeecccc-----cccceEECCccCeeeeecCCc----------eEEEEEccc
Confidence 99999999 999999999999 999999999999999999999 999999543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.3e-06 Score=55.19 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=37.6
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
|+++++|++|.. .++.+..+|++.+++|+|.|. +|+|||
T Consensus 1 g~~~~~~~~h~~-----~i~~i~~~~~~~~~~s~~~D~----------~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-----SINSIAWSPDGNFLASGSSDG----------TIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-----SEEEEEEETTSSEEEEEETTS----------EEEEEE
T ss_pred CeEEEEEcCCCC-----cEEEEEEecccccceeeCCCC----------EEEEEC
Confidence 689999999999 999999999999999999998 999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0006 Score=69.36 Aligned_cols=182 Identities=12% Similarity=0.104 Sum_probs=111.5
Q ss_pred CCCeEEEeec---CCCeEEEEEeeCceE--EEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSA---QDSIYKVFDLKNYTM--LYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~---~ds~ykVWdL~~Ys~--iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|.. .+..+.+||+.+.+. |.+.. ..+...+.| ||..|++.........|.+|++.+|++.. +
T Consensus 208 PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----l 282 (429)
T PRK03629 208 PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----V 282 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----c
Confidence 6888888743 356788999988753 33332 246678999 99888876555555678999999998654 3
Q ss_pred cccCCcceeeeeeccee--EEeec-CceeeEE--EcccceEEEeeccccCCC-ceEEEEeec-eeEEEEe-c--CeEEEE
Q 015220 277 LHRNKKVDFIEQFNEKL--LVKQE-NENLQIL--DVRNFELTEVSRTEFMTP-SAFIFLYEN-QLFLTFR-N--RTVAVW 346 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekl--lIKQe-~~~LkI~--dL~t~e~~~v~~T~f~hp-sAfifLy~s-qlFlSfs-d--~tI~iW 346 (411)
..+...+.....++++- +..+. +...+|| |+.+++..++. ..++. ....+-... .+.++-. + ..|.+|
T Consensus 283 t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt--~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 283 TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee--cCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 33334555667777654 33332 3344555 77888777652 21111 112222211 3333322 2 358889
Q ss_pred ecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 347 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 347 n~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
|+.+.-++.+.... ...+..+||||..|+..+.+. +.+.+.++++
T Consensus 361 dl~~g~~~~Lt~~~------~~~~p~~SpDG~~i~~~s~~~-------~~~~l~~~~~ 405 (429)
T PRK03629 361 DLATGGVQVLTDTF------LDETPSIAPNGTMVIYSSSQG-------MGSVLNLVST 405 (429)
T ss_pred ECCCCCeEEeCCCC------CCCCceECCCCCEEEEEEcCC-------CceEEEEEEC
Confidence 99844455555321 223677999999999988874 2346777776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.2e-06 Score=85.92 Aligned_cols=180 Identities=19% Similarity=0.156 Sum_probs=139.8
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
.||+-|+..+-.+-+--||..|.+++.+|. -|.|.+++.= +.+|+|+.|..--++| | ..|+.||- |.+.
T Consensus 139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvY----D-~~GtElHC----lk~~ 209 (545)
T KOG1272|consen 139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVY----D-NNGTELHC----LKRH 209 (545)
T ss_pred CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEe----c-CCCcEEee----hhhc
Confidence 599999999999999999999999999998 4588899887 9999999998655544 3 57999997 4455
Q ss_pred CcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-Cceeeee
Q 015220 281 KKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSF 356 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~ 356 (411)
-+|.-||-.+=-.|+.. +..=|+-.|+-+|++.-=-+|.-+......-=-.|-+.=++ ++|||.+|.+. -|++.-+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 66666666665556555 55569999999998874222322211111111123444556 99999999999 8999999
Q ss_pred ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 357 e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
--|.+ -++.|+|-++|...+....|. .+|||||.+
T Consensus 290 LcH~g-----~V~siAv~~~G~YMaTtG~Dr----------~~kIWDlR~ 324 (545)
T KOG1272|consen 290 LCHRG-----PVSSIAVDRGGRYMATTGLDR----------KVKIWDLRN 324 (545)
T ss_pred HhcCC-----CcceEEECCCCcEEeeccccc----------ceeEeeecc
Confidence 99999 999999999999999999999 999999975
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.4e-05 Score=75.97 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=95.6
Q ss_pred ccccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
|=.++-+|..+.-- +.|-|-.-.+..+++||.++|.+++ |+-+|-..+.=++-+ .-|.+. .|+-+.+||..
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 34455555554443 3445666778899999999999999 999999999987755 568887 99999999999
Q ss_pred -CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 350 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 350 -Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
|..+|.|-+|.+ .+|+|...++--+++|||-|. ++.+||-.+
T Consensus 90 TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~----------s~r~wDCRS 132 (307)
T KOG0316|consen 90 TGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDS----------SVRLWDCRS 132 (307)
T ss_pred cCeeeeecccccc-----eeeEEEecCcceEEEeccccc----------eeEEEEccc
Confidence 999999999999 999999999999999999999 999998543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.2e-05 Score=77.71 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=81.2
Q ss_pred eeecceeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC-Cceeeeeccc
Q 015220 287 EQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 287 E~~~ekllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~-Gel~~s~e~H 359 (411)
|-+.+.++.+|++..|||||+-- ..++. -...|..++..+..+ +.||+. -|+||.+|+.+ +.-++||.||
T Consensus 70 e~~e~~~~~a~GDGSLrl~d~~~~s~Pi~---~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 70 ENHENQVIAASGDGSLRLFDLTMPSKPIH---KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred CCCcceEEEEecCceEEEeccCCCCcchh---HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 44445558899999999999544 23333 455799999999987 678888 88999999999 9999999998
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
-. |.-..++=-.++++..|.|.|. +.++||+..
T Consensus 147 ~~----~Iy~a~~sp~~~nlfas~Sgd~----------~l~lwdvr~ 179 (311)
T KOG0277|consen 147 NS----CIYQAAFSPHIPNLFASASGDG----------TLRLWDVRS 179 (311)
T ss_pred cc----EEEEEecCCCCCCeEEEccCCc----------eEEEEEecC
Confidence 77 5544444445899999988886 999999853
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00073 Score=60.55 Aligned_cols=138 Identities=13% Similarity=0.003 Sum_probs=91.3
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE-eeccccCCCceEEEEeeceeEEE
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLT 337 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~sqlFlS 337 (411)
|..||..||+.+++..+-=....++...-..++.+++.+.++.|..||..+|+..- ... -.....-..++...+|+.
T Consensus 5 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~v~v~ 82 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVVDGGRVYVG 82 (238)
T ss_dssp EEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEEETTEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeeecccccccc
Confidence 57899999999999753101222332233377777888899999999999998653 211 111111136667788888
Q ss_pred EecCeEEEEecC-Cceeeee-ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 338 FRNRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 338 fsd~tI~iWn~~-Gel~~s~-e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..++.+..+|.. |+++-+. ......++-...-...+ +++.++.++.+. .|...|+.||+.+
T Consensus 83 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g----------~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 83 TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV--DGDRLYVGTSSG----------KLVALDPKTGKLL 145 (238)
T ss_dssp ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE--ETTEEEEEETCS----------EEEEEETTTTEEE
T ss_pred cceeeeEecccCCcceeeeeccccccccccccccCceE--ecCEEEEEeccC----------cEEEEecCCCcEE
Confidence 889999999966 9998874 54433223112222333 388888877754 8999999999875
|
... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0013 Score=66.57 Aligned_cols=185 Identities=11% Similarity=0.054 Sum_probs=108.5
Q ss_pred CCCeEEEeecC---CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~~---ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|... +..+.+||+.+.+.. .|++ ......++| ||..|++....+...-|.+|++.+|+... +
T Consensus 213 pDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----l 287 (433)
T PRK04922 213 PDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----L 287 (433)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----C
Confidence 68888887653 456899999887643 2332 244578899 88777665545555678899999998643 2
Q ss_pred cccCCcceeeeeecce--eEEeec---CceeeEEEcccceEEEeeccccCCCceEEEEe--eceeEEEE-ecC--eEEEE
Q 015220 277 LHRNKKVDFIEQFNEK--LLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTF-RNR--TVAVW 346 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek--llIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy--~sqlFlSf-sd~--tI~iW 346 (411)
-.+.........++++ ++..++ ...|-++|+.+++..++... ++...-..+. .+.+.++- .++ .|.+|
T Consensus 288 t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 288 TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 2222222334556654 444432 23466678888887765311 1111111111 12343332 222 69999
Q ss_pred ecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 347 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 347 n~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|+.+.-.+.+.... .......||||+.|+..+.+. +.+.|.++|+..+
T Consensus 366 d~~~g~~~~Lt~~~------~~~~p~~spdG~~i~~~s~~~-------g~~~L~~~~~~g~ 413 (433)
T PRK04922 366 DLSTGSVRTLTPGS------LDESPSFAPNGSMVLYATREG-------GRGVLAAVSTDGR 413 (433)
T ss_pred ECCCCCeEECCCCC------CCCCceECCCCCEEEEEEecC-------CceEEEEEECCCC
Confidence 99844344554321 123467999999998777653 3457888887543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00026 Score=73.87 Aligned_cols=180 Identities=19% Similarity=0.201 Sum_probs=114.2
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEec----------
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIE---------- 265 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~---------- 265 (411)
+.--.--||++.+.|+|+++|||.+.++-.+++++ +||.+..- ..++|+.+.-- . .++|.|..
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D-~--~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD-G--TVALKDCRDPSNSGKEWK 327 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecccc-c--eEEeeeccCccccCceEE
Confidence 34445569999999999999999999999999966 99988876 56666555421 1 12222322
Q ss_pred -CCcEEeEeeeccccCCcceeeeeeccee-EEeecCceeeEEEcccc-eEEEeeccccCCCceEEEEeec----eeEEEE
Q 015220 266 -DGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYEN----QLFLTF 338 (411)
Q Consensus 266 -tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~s----qlFlSf 338 (411)
+|++.+- .-.| +.+.. ++-.++..++=+|+|+- ++.- |+-.|-..+..|..| .++.|.
T Consensus 328 ~~g~VEkv---~w~~---------~se~~f~~~tddG~v~~~D~R~~~~~vw---t~~AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 328 FDGEVEKV---AWDP---------HSENSFFVSTDDGTVYYFDIRNPGKPVW---TLKAHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred eccceEEE---EecC---------CCceeEEEecCCceEEeeecCCCCCcee---EEEeccCCcceEEecCCCCcceeec
Confidence 4444443 1222 33333 34458889999999995 6666 788888888888776 567777
Q ss_pred -ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 339 -RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 -sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.++++.+|+|.++-=+.--.|..- .--+-..+.-||-....++...+ +-+.|||+.|+.
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~~~~~--~~rl~c~~~~~~~a~~la~GG~k---------~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKEHSFK--LGRLHCFALDPDVAFTLAFGGEK---------AVLRVWDIFTNS 452 (463)
T ss_pred cccceEEEEeecCCCCccccccccc--ccceeecccCCCcceEEEecCcc---------ceEEEeecccCh
Confidence 899999999997633322223220 00011122233333333333332 269999999864
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0023 Score=64.58 Aligned_cols=245 Identities=17% Similarity=0.157 Sum_probs=176.2
Q ss_pred EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEE
Q 015220 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLT 209 (411)
Q Consensus 130 ~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt 209 (411)
.|+..|.+-|-+|=|...++-|++.| =+ .+|.-+.++...+ ++++.-+-||-... |=| .....
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvss----WD-gslrlYdv~~~~l-~~~~~~~~plL~c~---------F~d--~~~~~ 69 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSS----WD-GSLRLYDVPANSL-KLKFKHGAPLLDCA---------FAD--ESTIV 69 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEe----cc-CcEEEEeccchhh-hhheecCCceeeee---------ccC--CceEE
Confidence 57888999999999985555555433 23 5677787777644 45667777776652 322 45566
Q ss_pred eecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceee
Q 015220 210 YSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI 286 (411)
Q Consensus 210 ~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FL 286 (411)
.+.-|+++|+.||.+.+...-.+++ -|+-|.-+ .|.+++-+=. --||+||--+-....+ +-..|+|..|
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD----~~ik~wD~R~~~~~~~----~d~~kkVy~~ 141 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWD----KTIKFWDPRNKVVVGT----FDQGKKVYCM 141 (323)
T ss_pred EeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccC----ccEEEEeccccccccc----cccCceEEEE
Confidence 7788999999999999988888876 67777777 6665443322 2489999887555554 4556899999
Q ss_pred eeecceeEEeecCceeeEEEcccceEEEe--eccccCCCceEEEEeeceeEEEE-ecCeEEEEecCCc-----eeeeecc
Q 015220 287 EQFNEKLLVKQENENLQILDVRNFELTEV--SRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRGE-----LVTSFED 358 (411)
Q Consensus 287 E~~~ekllIKQe~~~LkI~dL~t~e~~~v--~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~Ge-----l~~s~e~ 358 (411)
-+..+.|++.-.+.+..+|||++-+.... ...+...-..+-++-+.+=|+.. -+|-|.+=.|+-. ..=.|.=
T Consensus 142 ~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 142 DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 99999999999999999999999443321 11222333444555544556666 8888877766622 4447888
Q ss_pred ccccCCCCc----cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 359 HLLWHPDCN----TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 359 H~~~~~~c~----~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|..-..+.+ +|+|+.+|=-.++++|..|- -|++||+.+-|=
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG----------~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG----------IVNIWDLFNRKR 266 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCc----------eEEEccCcchhh
Confidence 888666655 69999999999999999885 999999988663
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.3e-05 Score=82.48 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=128.0
Q ss_pred CeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEE--eccCceeEEEEeC---CEEEEEEecCCCceeeEEEEec-CCcE
Q 015220 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKNVQEIKISP---GIMLLIFTKASGHVPLKILSIE-DGTV 269 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iys--Ls~~~VqeIkISd---G~~Lai~q~t~~~ipiKIl~I~-tG~~ 269 (411)
-=+.|-.+--.+|++++||+++|.|||+--+-..+ =..|-|-+|++|+ ..|.++ +.--++.+|||- .-+.
T Consensus 137 ~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~----~dsG~lqlWDlRqp~r~ 212 (839)
T KOG0269|consen 137 NKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI----HDSGYLQLWDLRQPDRC 212 (839)
T ss_pred eeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe----cCCceEEEeeccCchhH
Confidence 35778888889999999999999999998664432 2456899999993 345444 445689999995 4455
Q ss_pred EeEeeeccccCCcceeeeeecceeEEeec--CceeeEEEcccceEEEee--ccc------cCCCceEEEEeeceeEEEEe
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEVS--RTE------FMTPSAFIFLYENQLFLTFR 339 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~v~--~T~------f~hpsAfifLy~sqlFlSfs 339 (411)
.+. +-.|+-||-.+--+|..-+|+.+ +..+||||+-+++...+. .|. ..-|+--.-|++. ...-
T Consensus 213 ~~k---~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtc---smv~ 286 (839)
T KOG0269|consen 213 EKK---LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATC---SMVV 286 (839)
T ss_pred HHH---hhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhh---hccc
Confidence 555 67899999999999988899995 589999999976654411 111 0022222222221 1236
Q ss_pred cCeEEEEecC--CceeeeeccccccCCCCccceEE-EcCCCCEEEEEecCCC
Q 015220 340 NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIY-ITSDQDLIISYCKADS 388 (411)
Q Consensus 340 d~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~-Is~Dqd~iiS~~~d~~ 388 (411)
|..|.|||.+ ==|.++|+-|-. .+..|+ =+.|-+++.|++||..
T Consensus 287 dtsV~VWDvrRPYIP~~t~~eH~~-----~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYATFLEHTD-----SVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred cceEEEEeeccccccceeeeccCc-----cccceeccCCCceeeEeecCccH
Confidence 8899999999 338899999988 555544 4568889999999963
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=85.96 Aligned_cols=134 Identities=10% Similarity=0.137 Sum_probs=105.4
Q ss_pred eeEEEEecC---CcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--
Q 015220 258 PLKILSIED---GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-- 332 (411)
Q Consensus 258 piKIl~I~t---G~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-- 332 (411)
.|-+|||.- -+.+..|+--=..-..++|-...+..++=.+-+..+|+||++..+... |.|...+++==|..+
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPG 187 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc---cccccchhhhceeeccC
Confidence 367899986 444334331111223566777777788888899999999999999998 888888876655544
Q ss_pred --eeEEEE-ecCeEEEEecC-Cc-eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 333 --QLFLTF-RNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 333 --qlFlSf-sd~tI~iWn~~-Ge-l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
..|++. .+|.+++||+| .+ ...-|.-|.+ .+-.+--.|+|.+|.+|.-|+ +|+|||-.++
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-----pV~c~nwhPnr~~lATGGRDK----------~vkiWd~t~~ 252 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-----PVLCLNWHPNREWLATGGRDK----------MVKIWDMTDS 252 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccC-----ceEEEeecCCCceeeecCCCc----------cEEEEeccCC
Confidence 778888 88899999999 55 4559999999 788888999999999999999 9999998876
Q ss_pred ee
Q 015220 408 TC 409 (411)
Q Consensus 408 k~ 409 (411)
+.
T Consensus 253 ~~ 254 (839)
T KOG0269|consen 253 RA 254 (839)
T ss_pred Cc
Confidence 54
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00058 Score=71.36 Aligned_cols=227 Identities=18% Similarity=0.181 Sum_probs=143.6
Q ss_pred cCCCeEEEEEeEecCCCceeeeEeeehhh----hhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEE
Q 015220 146 KNNDSLITVSVYASDNFSSLRCRSTRIEY----IRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 221 (411)
Q Consensus 146 ~~n~slI~vSv~~sd~~s~L~cr~~~~~~----i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWd 221 (411)
+..|+||++--..+|. |+|.|+.-..++ +..--+-..+|| +.+-|.||- =++.-|--++-+.=+..+.|||
T Consensus 134 ~psDnlIl~ar~eddv-s~LEvYVyn~~e~nlYvHHD~ilpafPL-C~ewld~~~---~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 134 KPSDNLILCARNEDDV-SYLEVYVYNEEEENLYVHHDFILPAFPL-CIEWLDHGS---KSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred ccCCcEEEEeeccCCc-eEEEEEEEcCCCcceeEecceeccCcch-hhhhhhcCC---CCCCCcceEEEeccCceeEEec
Confidence 4568999976555555 999999987553 222222233333 223333311 1444454566666788999999
Q ss_pred eeCce---EEEEeccC----ceeE--------------EEEe----CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 222 LKNYT---MLYSISDK----NVQE--------------IKIS----PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 222 L~~Ys---~iysLs~~----~Vqe--------------IkIS----dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
|-=-- +-.+|-.. .... ..++ -.++||...-- --+|+||+.+|++-.++.
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD---~TV~lWD~~~g~p~~s~~-- 283 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD---KTVKLWDVDTGKPKSSIT-- 283 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC---ceEEEEEcCCCCcceehh--
Confidence 86433 22333311 1111 1111 22334433332 247999999999999944
Q ss_pred cccCCcceeeeeec---ceeEEeecCceeeEEEccc----ceEEE----eeccccCCCceEEEEeeceeEEEE-ecCeEE
Q 015220 277 LHRNKKVDFIEQFN---EKLLVKQENENLQILDVRN----FELTE----VSRTEFMTPSAFIFLYENQLFLTF-RNRTVA 344 (411)
Q Consensus 277 L~h~K~I~FLE~~~---ekllIKQe~~~LkI~dL~t----~e~~~----v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~ 344 (411)
+|.|+||.++.++ +.||--+-+....+.|++. +.-++ |-+-.|.|-+. ..|+.. .||+++
T Consensus 284 -~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-------~~f~~~tddG~v~ 355 (463)
T KOG0270|consen 284 -HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-------NSFFVSTDDGTVY 355 (463)
T ss_pred -hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-------eeEEEecCCceEE
Confidence 8999999999986 4556666779999999993 33333 11122222222 234444 899999
Q ss_pred EEecC--CceeeeeccccccCCCCccceEEEcCC-CCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 345 VWNFR--GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 345 iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
-.|.| |+++.++.-|-. .+-.|-.++. --++.++++|+ ++|+|++.
T Consensus 356 ~~D~R~~~~~vwt~~AHd~-----~ISgl~~n~~~p~~l~t~s~d~----------~Vklw~~~ 404 (463)
T KOG0270|consen 356 YFDIRNPGKPVWTLKAHDD-----EISGLSVNIQTPGLLSTASTDK----------VVKLWKFD 404 (463)
T ss_pred eeecCCCCCceeEEEeccC-----CcceEEecCCCCcceeeccccc----------eEEEEeec
Confidence 99999 899999999988 7777766554 34677788887 99999985
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0017 Score=65.91 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=105.5
Q ss_pred CeEEEeecCCC--eEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 205 GKVLTYSAQDS--IYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 205 GkiLt~~~~ds--~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+++.-.....+ .+-+||..... ...++ .+.+...+.| ||..|++....+...-|.+|++.+|+...-.. .
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----~ 238 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----F 238 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec----C
Confidence 66554443333 44455554433 33333 3478899999 88888877666666669999999998654211 1
Q ss_pred CCcceeeeeecce--eEE-eecCceeeE--EEcccceEEEeeccccCCCceEEEEee-ceeEEEE-ecCeEEEEecC--C
Q 015220 280 NKKVDFIEQFNEK--LLV-KQENENLQI--LDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTF-RNRTVAVWNFR--G 350 (411)
Q Consensus 280 ~K~I~FLE~~~ek--llI-KQe~~~LkI--~dL~t~e~~~v~~T~f~hpsAfifLy~-sqlFlSf-sd~tI~iWn~~--G 350 (411)
.-.+.....++|+ +++ ...+.+..| +|+.+++..++.... +.-....|-.. +.++++- +++...||..+ |
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 1223456777775 333 344444455 566677766652211 11111122221 2444433 44677888764 4
Q ss_pred ceee--eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~--s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
...+ +++++. ..+..+||||+.|+..+.+. +...|.+||+.+|+..
T Consensus 318 g~~~~lt~~g~~-------~~~~~~SpDG~~Ia~~s~~~-------g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 318 GAAQRVTFTGSY-------NTSPRISPDGKLLAYISRVG-------GAFKLYVQDLATGQVT 365 (427)
T ss_pred CceEEEecCCCC-------cCceEECCCCCEEEEEEccC-------CcEEEEEEECCCCCeE
Confidence 3333 344422 22568999999998665442 1237999999998753
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=75.23 Aligned_cols=181 Identities=15% Similarity=0.232 Sum_probs=125.4
Q ss_pred EEeeCCCC-eEEEeecCCCeEEEEEee----CceEEEEeccC--ceeEEEEe---CCEE-EEEEecCCCceeeEEEEecC
Q 015220 198 VEFDDVNG-KVLTYSAQDSIYKVFDLK----NYTMLYSISDK--NVQEIKIS---PGIM-LLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 198 vEFDd~NG-kiLt~~~~ds~ykVWdL~----~Ys~iysLs~~--~VqeIkIS---dG~~-Lai~q~t~~~ipiKIl~I~t 266 (411)
++|-..-- +.++.+.--+.+=+||+. ++.-+|.-+.+ .|.-++.+ +.++ .+.++++ |.+-|+++
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt-----iR~~D~~~ 266 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT-----IRLQDFEG 266 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce-----eeeeeecc
Confidence 46666666 777777889999999994 45555555544 89999998 3333 3333333 55556665
Q ss_pred CcEE--eEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceE-EEeeccccCCCceEEEEeec----eeEEE
Q 015220 267 GTVL--KSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFLYEN----QLFLT 337 (411)
Q Consensus 267 G~~L--~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~-~~v~~T~f~hpsAfifLy~s----qlFlS 337 (411)
++-- .+.+ -..+=+.-+....|.. |+.+.=..+.+||++++.. ++ .+-.|..-+--++.+ +.|+|
T Consensus 267 ~i~e~v~s~~---~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~---~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 267 NISEEVLSLD---TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE---NLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred hhhHHHhhcC---ccceeeeeccccCCCccEEEeecccceEEEEeecCCccch---hhhhhhcccceeecCCCCchheee
Confidence 4321 1110 0111122233344443 5556545999999999766 44 445588888888888 78999
Q ss_pred E-ecCeEEEEecC---Cc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 338 F-RNRTVAVWNFR---GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 338 f-sd~tI~iWn~~---Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
. -|+|.+|||+| |. ++-+.-.|.. .+|++|.||++-.|++-|.|. .|.|||-
T Consensus 341 ~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr-----sV~sAyFSPs~gtl~TT~~D~----------~IRv~ds 398 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKASPFLSTLPHRR-----SVNSAYFSPSGGTLLTTCQDN----------EIRVFDS 398 (498)
T ss_pred cccCcceeeeehhhhcCCCCcceecccccc-----eeeeeEEcCCCCceEeeccCC----------ceEEeec
Confidence 8 78899999998 32 4567778998 999999999999999999999 9999985
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.2e-05 Score=75.26 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=94.8
Q ss_pred cccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEEEE-ecCeEEEEecC-
Q 015220 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFlSf-sd~tI~iWn~~- 349 (411)
-.|..+|-.+++..-++-=-+.++.|+|||++++.-.- ++-.|.-.+.+|-.. .=+|++ .|+.|-+|+-.
T Consensus 40 ~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEecceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 45677888888877777666788999999999976665 555555555555433 247888 88999999998
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
=+++.+|-.|.. .+|-|.|-|.|++.+|-+.|. ++++|||.+|+-
T Consensus 117 W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~----------~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 117 WELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQ----------VLRTWNLVRGRV 161 (362)
T ss_pred eEEeeeeccccc-----ccceeEecCCCceEEEEcCCc----------eeeeehhhcCcc
Confidence 789999999999 899999999999999999998 999999999973
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0024 Score=63.88 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=138.6
Q ss_pred CCCeEEEeecCCCeEEEEEeeC--ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKN--YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~--Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
|.|+.|++.+=|.+.-+|--.+ ++++-.|.++ ||+.|..| +|-+||+-.+-++ +=||-+.-+...--..-|-
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS---VWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS---VWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe---EEEEEecCCCcEEEEeeec
Confidence 6899999888899999998875 6799999966 99999999 9999999999886 4567766555555555689
Q ss_pred ccCCcceeeeeec--ceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCc
Q 015220 278 HRNKKVDFIEQFN--EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGE 351 (411)
Q Consensus 278 ~h~K~I~FLE~~~--ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Ge 351 (411)
+|..+|--+.-|| +=|+=.+=++.||+|.--.++-++.-.|+.+|...+-.++.. +.+.+. .|+|++||-..
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-- 225 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-- 225 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec--
Confidence 9999999999999 444455578999999988666555556899998877777655 468888 78899999876
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+++++-..+ .+.+|.+- -++|.|+|.|. +|.++-..
T Consensus 226 --~~~~~~~sr----~~Y~v~W~--~~~IaS~ggD~----------~i~lf~~s 261 (312)
T KOG0645|consen 226 --TDLSGMHSR----ALYDVPWD--NGVIASGGGDD----------AIRLFKES 261 (312)
T ss_pred --cCcchhccc----ceEeeeec--ccceEeccCCC----------EEEEEEec
Confidence 555543321 33444444 67899999987 77766543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00045 Score=69.78 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=121.3
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCc-eEE--EEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TML--YSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y-s~i--ysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
=++|-...+-.+++++=|++.|+|++++- ..+ -..++ .-|.++.-| ||.-++++.+-+ -+|+|||++||+..
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk---~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK---QAKLWDLASGQVSQ 108 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCC---ceEEEEccCCCeee
Confidence 36777766666778888999999999994 322 11222 389999999 898877777765 48999999999877
Q ss_pred EeeeccccCCcceeeeeeccee--EE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeE-EEE-ecCeEEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKL--LV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF-LTF-RNRTVAV 345 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekl--lI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlF-lSf-sd~tI~i 345 (411)
-.. |..||..+.-.+... ++ -+=+..||-||.+...+.- | -..|+-+.+...-+-. +.. .++.|.+
T Consensus 109 v~~----Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~---t-~~LPeRvYa~Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 109 VAA----HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA---T-LQLPERVYAADVLYPMAVVATAERHIAV 180 (347)
T ss_pred eee----cccceeEEEEecCCCcceeEecccccceeecccCCCCeee---e-eeccceeeehhccCceeEEEecCCcEEE
Confidence 533 445555444444333 44 4567999999999888774 3 3589999888766443 333 9999999
Q ss_pred EecCCce--eeeeccccccCCCCccceEEEcCCCCEEEEEe
Q 015220 346 WNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 346 Wn~~Gel--~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
+||++.+ ..+.+.-+.| -+..|++-.|+|.-.-||
T Consensus 181 ynL~n~~te~k~~~SpLk~----Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKW----QTRCVACFQDKDGFALGS 217 (347)
T ss_pred EEcCCCcchhhhhcCcccc----eeeEEEEEecCCceEeee
Confidence 9998543 3355555555 677778777777654444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0041 Score=61.01 Aligned_cols=175 Identities=11% Similarity=0.065 Sum_probs=101.8
Q ss_pred CCCCeEEEeecCC---CeEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 202 DVNGKVLTYSAQD---SIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 202 d~NGkiLt~~~~d---s~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
.+||+-|+|...+ ..+.+||+.+.+....... ..+..++.| ||..|++.....+...|.+|++.+|+...-
T Consensus 198 Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l---- 273 (417)
T TIGR02800 198 SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL---- 273 (417)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC----
Confidence 4678888876543 5899999998754332222 245668888 887666655555666788899999875442
Q ss_pred cccCCcceeeeeecc--eeEEeec---CceeeEEEcccceEEEeeccccCCCceEEEE-eeceeEEEEecC---eEEEEe
Q 015220 277 LHRNKKVDFIEQFNE--KLLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFL-YENQLFLTFRNR---TVAVWN 347 (411)
Q Consensus 277 L~h~K~I~FLE~~~e--kllIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL-y~sqlFlSfsd~---tI~iWn 347 (411)
..+.........+++ ++++.+. ...|-++|+.+++...+..... ......+- ..+.++++-.+. .|.+|+
T Consensus 274 ~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 274 TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG-YNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-CccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 222222212233444 3444442 3367888998888766532211 11111111 122445555444 788888
Q ss_pred cCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 348 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 348 ~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+.+...+.+..+. .......+|||..|+..+.+.
T Consensus 353 ~~~~~~~~l~~~~------~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 353 LDGGGERVLTDTG------LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCCCeEEccCCC------CCCCceECCCCCEEEEEEeCC
Confidence 8844334333221 123457899999998888764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0035 Score=63.95 Aligned_cols=209 Identities=12% Similarity=0.107 Sum_probs=133.3
Q ss_pred CCCeEEeeCCCCeEEEeec---------CCCeEEEEEeeCceEEEEecc---------CceeEEEEe-CCEEEEEEecCC
Q 015220 194 WPGFVEFDDVNGKVLTYSA---------QDSIYKVFDLKNYTMLYSISD---------KNVQEIKIS-PGIMLLIFTKAS 254 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~---------~ds~ykVWdL~~Ys~iysLs~---------~~VqeIkIS-dG~~Lai~q~t~ 254 (411)
.|..+ +-.-+..+.+.+. .+..+.|||.++.+.+.+|.- ..-..+.+| ||-.|++.+-+
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~- 125 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS- 125 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-
Confidence 46665 6655666667777 799999999999999988872 233488999 99988888754
Q ss_pred CceeeEEEEecCCcEEeEee----eccccCCcceeeeeecceeEEe--e-cCceeeEEEcccceEEE-eeccccCCCceE
Q 015220 255 GHVPLKILSIEDGTVLKSFN----HLLHRNKKVDFIEQFNEKLLVK--Q-ENENLQILDVRNFELTE-VSRTEFMTPSAF 326 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~----~LL~h~K~I~FLE~~~ekllIK--Q-e~~~LkI~dL~t~e~~~-v~~T~f~hpsAf 326 (411)
+---+.|.|+++++++.++. -++-...+-.|+....|+-+.+ . +.++.+ ..+-+.+. ....+|.+| +|
T Consensus 126 p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~---~~~~~vf~~~~~~v~~rP-~~ 201 (352)
T TIGR02658 126 PSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK---IKPTEVFHPEDEYLINHP-AY 201 (352)
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE---EeeeeeecCCccccccCC-ce
Confidence 22346899999999999754 2233345556666666665444 1 111111 11111111 123566788 55
Q ss_pred EEEeeceeEEEEecCeEEEEecCCc------eeeeeccc---cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 327 IFLYENQLFLTFRNRTVAVWNFRGE------LVTSFEDH---LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 327 ifLy~sqlFlSfsd~tI~iWn~~Ge------l~~s~e~H---~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
.--....+|+|+. |+|.+=|+.|+ ..-.++.. .+|.|.=..- +++++|+..++-............+-+
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee-EEEcCCCCEEEEEecCCccccccCCCC
Confidence 3334568899999 99999997654 22223222 3576654333 999999999988553221111122235
Q ss_pred eEEEeeecceeee
Q 015220 398 KLFVSLLMFVTCK 410 (411)
Q Consensus 398 tI~i~~i~tGk~~ 410 (411)
.|-+.|..|+|.+
T Consensus 280 ~V~ViD~~t~kvi 292 (352)
T TIGR02658 280 FLFVVDAKTGKRL 292 (352)
T ss_pred EEEEEECCCCeEE
Confidence 8999999999975
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=66.96 Aligned_cols=175 Identities=12% Similarity=0.169 Sum_probs=128.3
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
-|-|++.++.-|+++ =|++.+++|....++..++.++ -+.....-|-.=++++.-.+ -|+.+|+.||+...
T Consensus 18 ~v~f~~~~~~LLvss-WDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg---~vr~~Dln~~~~~~---- 89 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSS-WDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDG---QVRRYDLNTGNEDQ---- 89 (323)
T ss_pred eEEEcCcCCcEEEEe-ccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCc---eEEEEEecCCccee----
Confidence 478997777777766 8999999999998888777755 55555544422222222221 36899999998876
Q ss_pred ccccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC--
Q 015220 276 LLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-- 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-- 349 (411)
+.-|.++|+.||-. .++++=.+=+++||+||.++ ++....++.+..+.++..+ ..++.+ +++.+-+||++
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~----~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN----KVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccc----cccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 57789999999999 45556666789999999998 3333667788999888877 666665 99999999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.++...-|..+-| -+..|..=|.|+=-+++|-|-
T Consensus 166 ~~~~q~reS~lky----qtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 166 DEPFQRRESSLKY----QTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred cchhhhcccccee----EEEEEEEecCCCceEEEeecc
Confidence 7777555555554 577777777777666666553
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00021 Score=78.48 Aligned_cols=183 Identities=17% Similarity=0.267 Sum_probs=139.5
Q ss_pred eEEEeecCCCeEEEEEee-CceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEE-ecCCcEEeEeeecccc
Q 015220 206 KVLTYSAQDSIYKVFDLK-NYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILS-IEDGTVLKSFNHLLHR 279 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~-~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~-I~tG~~L~t~~~LL~h 279 (411)
+.|++.+-|.-+-|+|.+ +|.++++|.++ -|-.||+- ++++=|++-++...++..+.- -.+|.+-....+-+++
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence 566666669999999985 69999999987 89999987 889999999999998888765 2345444433333333
Q ss_pred CCcceeeeeecc--eeEEeecCceeeEEEcccceEEEe---eccccCCCceEEEEeeceeEEEE--ecCeEEEEecC-Cc
Q 015220 280 NKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEV---SRTEFMTPSAFIFLYENQLFLTF--RNRTVAVWNFR-GE 351 (411)
Q Consensus 280 ~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v---~~T~f~hpsAfifLy~sqlFlSf--sd~tI~iWn~~-Ge 351 (411)
--++=||+-+. .+++.=-+.||+|+|+.+|+..+. +...-+++- =+-|.-+.+|+.- +|+|+.++||- ||
T Consensus 597 -tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI-Kv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 597 -TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI-KVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred -ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE-EEEECCCccEEEEeecCCceEEEEeccch
Confidence 23444665543 346666889999999999988872 222222221 2346667787766 89999999999 99
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.++++.||.- -+.-+-.++|=+-|||.+-|. -|-||-+-
T Consensus 675 cvA~m~GHsE-----~VTG~kF~nDCkHlISvsgDg----------CIFvW~lp 713 (1080)
T KOG1408|consen 675 CVAQMTGHSE-----AVTGVKFLNDCKHLISVSGDG----------CIFVWKLP 713 (1080)
T ss_pred hhhhhcCcch-----heeeeeecccchhheeecCCc----------eEEEEECc
Confidence 9999999998 788899999999999999886 99999874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0043 Score=62.06 Aligned_cols=175 Identities=12% Similarity=0.111 Sum_probs=101.9
Q ss_pred eEEE--EEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 216 IYKV--FDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 216 ~ykV--WdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
.|++ +|+.+.....-.+ ++.+...+.| ||..|+.....+...-|-+|++.+|+...-. ...........+++
T Consensus 178 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~----~~~g~~~~~~~SpD 253 (430)
T PRK00178 178 RYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT----NFEGLNGAPAWSPD 253 (430)
T ss_pred ceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc----CCCCCcCCeEECCC
Confidence 4554 5776665433223 3478888999 8888877665556667889999999764421 11112234556666
Q ss_pred e--eEE-ee--cCceeeEEEcccceEEEeeccccCCCceEEEE-eeceeEEEE-ecC--eEEEEecC-Cceee-eecccc
Q 015220 292 K--LLV-KQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFL-YENQLFLTF-RNR--TVAVWNFR-GELVT-SFEDHL 360 (411)
Q Consensus 292 k--llI-KQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL-y~sqlFlSf-sd~--tI~iWn~~-Gel~~-s~e~H~ 360 (411)
+ +++ .+ ++..|-+||+.+++..++..... ......|- ..++++++- +++ .|-+|++. |+..+ ++.++.
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~ 332 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY 332 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeEEcccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 4 332 22 33468888999999887533211 11112221 122555443 333 46666776 55432 333322
Q ss_pred ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 361 ~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.....+||||+.|+-.+.+. +...|-++|+.||+.
T Consensus 333 -------~~~~~~Spdg~~i~~~~~~~-------~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 333 -------NARPRLSADGKTLVMVHRQD-------GNFHVAAQDLQRGSV 367 (430)
T ss_pred -------ccceEECCCCCEEEEEEccC-------CceEEEEEECCCCCE
Confidence 23567999999987655432 123688899998875
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0036 Score=63.31 Aligned_cols=187 Identities=11% Similarity=0.110 Sum_probs=112.7
Q ss_pred CCCeEEEeecC---CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~~---ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|... +..+.+||+.+.+. ..|++ ..+...+.| ||-.|++........-|-+|++.+|++.. +
T Consensus 211 pDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----L 285 (435)
T PRK05137 211 PNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----L 285 (435)
T ss_pred CCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----c
Confidence 68888888653 57899999988764 33442 256788899 88777766666666778888999997643 3
Q ss_pred cccCCcceeeeeecce--eEEeec---CceeeEEEcccceEEEeeccccCCCceEEEEee----ceeEEEEe-c--CeEE
Q 015220 277 LHRNKKVDFIEQFNEK--LLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLYE----NQLFLTFR-N--RTVA 344 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek--llIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~----sqlFlSfs-d--~tI~ 344 (411)
..+.........++|+ +...+. ...|-+||+.+++...+... +........ +.+.++-. . ..|.
T Consensus 286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence 3333333334556654 444442 24688889988888776421 111111111 23333322 2 3688
Q ss_pred EEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 345 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 345 iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+|++.|.-.+.+..- + .+.....||||+.|+-.+.+.... +...+-+.|+.+|+
T Consensus 362 ~~d~~~~~~~~lt~~--~----~~~~p~~spDG~~i~~~~~~~~~~----~~~~L~~~dl~g~~ 415 (435)
T PRK05137 362 VMKPDGSGERILTSG--F----LVEGPTWAPNGRVIMFFRQTPGSG----GAPKLYTVDLTGRN 415 (435)
T ss_pred EEECCCCceEeccCC--C----CCCCCeECCCCCEEEEEEccCCCC----CcceEEEEECCCCc
Confidence 899886545544321 1 356778999999988655543110 11357777776554
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00023 Score=71.80 Aligned_cols=193 Identities=18% Similarity=0.213 Sum_probs=115.2
Q ss_pred EEEEEeEecC-CCceeeeEeee-hh-hhhhCCCCCCCcc-----eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEe
Q 015220 151 LITVSVYASD-NFSSLRCRSTR-IE-YIRRGKPDAGFAL-----FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 222 (411)
Q Consensus 151 lI~vSv~~sd-~~s~L~cr~~~-~~-~i~~gk~~~~~~L-----F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL 222 (411)
=|..++|.-. +-..|.|.++= ++ .++. ....+| ..++.+..-.-|||.+ |+.-|++-. |..+-+|+|
T Consensus 77 ~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~---S~~~tlE~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l 151 (370)
T KOG1007|consen 77 RILATVYNDTSDSGVLTGAAIWQIPEPLGQ---SNSSTLECVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSL 151 (370)
T ss_pred ceEEEEEeccCCCcceeeEEEEecccccCc---cccchhhHhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEc
Confidence 3566777622 22456777764 22 2211 111222 1223344456899987 999888766 888999999
Q ss_pred eCceEEEEeccCceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCc
Q 015220 223 KNYTMLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE 300 (411)
Q Consensus 223 ~~Ys~iysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~ 300 (411)
...+.+ |+++..| .++-.-+ ..|+ --|| +..+++..-.+.
T Consensus 152 ~ess~~-------vaev~ss~s~e~~~~f---------------tsg~-------WspH---------Hdgnqv~tt~d~ 193 (370)
T KOG1007|consen 152 DESSKI-------VAEVLSSESAEMRHSF---------------TSGA-------WSPH---------HDGNQVATTSDS 193 (370)
T ss_pred ccCcch-------heeeccccccccccee---------------cccc-------cCCC---------CccceEEEeCCC
Confidence 998764 3344433 2210000 0000 1111 234455566788
Q ss_pred eeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEE
Q 015220 301 NLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIY 372 (411)
Q Consensus 301 ~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~ 372 (411)
+|+.||++| ++..+ -+..|-.-+.-|..| .+++|. -|+.|+|||.| -++|.++.+|.-|. =+-=|
T Consensus 194 tl~~~D~RT~~~~~s---I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv----W~VRf 266 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNS---IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV----WAVRF 266 (370)
T ss_pred cEEEEEccchhhhcc---hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE----EEEEe
Confidence 999999998 33333 233344555555555 456676 88999999999 77999999999872 22222
Q ss_pred EcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 373 ITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 373 Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
=..-.+||.||+.|. ++++|.
T Consensus 267 n~~hdqLiLs~~SDs----------~V~Lsc 287 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDS----------AVNLSC 287 (370)
T ss_pred cCccceEEEecCCCc----------eeEEEe
Confidence 344567888888887 677664
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00086 Score=70.60 Aligned_cols=179 Identities=17% Similarity=0.233 Sum_probs=122.1
Q ss_pred eEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-CCE-EEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 206 KVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-PGI-MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-dG~-~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
-+|.-.+.|++.++|-+-.-+ .|++|-=+ -++...+. +|+ .++++.+ +=|+..|||+++++.+= ..+-|+
T Consensus 226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r---rky~ysyDle~ak~~k~-~~~~g~ 301 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR---RKYLYSYDLETAKVTKL-KPPYGV 301 (514)
T ss_pred ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc---ceEEEEeeccccccccc-cCCCCc
Confidence 456667889999998775533 66666533 67777777 777 5544433 34678999999998873 112222
Q ss_pred -CCcceeeeeecceeEEeecCc--eeeEEEcccceEEEeeccccCC---CceEEEEeec-eeEEEEecCeEEEEecC-Cc
Q 015220 280 -NKKVDFIEQFNEKLLVKQENE--NLQILDVRNFELTEVSRTEFMT---PSAFIFLYEN-QLFLTFRNRTVAVWNFR-GE 351 (411)
Q Consensus 280 -~K~I~FLE~~~ekllIKQe~~--~LkI~dL~t~e~~~v~~T~f~h---psAfifLy~s-qlFlSfsd~tI~iWn~~-Ge 351 (411)
+|-++--|++++.-+|+=.|+ -|-++-..|+|.+- -|-- =++|.|---+ .|+++..++.|-+||++ -.
T Consensus 302 e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~----s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 302 EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT----SFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS 377 (514)
T ss_pred ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh----eeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc
Confidence 233444555587776665554 46666667777663 2211 2334443222 77888899999999999 66
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.+.+|-|.-.- ...++.+|.+|+++.+||.. |-+||+|..+
T Consensus 378 ~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~----------GiVNIYd~~s 418 (514)
T KOG2055|consen 378 CLHRFVDDGSV----HGTSLCISLNGSYLATGSDS----------GIVNIYDGNS 418 (514)
T ss_pred eEEEEeecCcc----ceeeeeecCCCceEEeccCc----------ceEEEeccch
Confidence 77788877663 67899999999999999987 4999998543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00087 Score=68.42 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=113.9
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--e-EEeecCceeeEEEcccceEEEeeccc
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--L-LVKQENENLQILDVRNFELTEVSRTE 319 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--l-lIKQe~~~LkI~dL~t~e~~~v~~T~ 319 (411)
+|.-++..-+ ..-=|+|+|..+++..+. +.+|--.|+-|.-++.+ + |=.+++|.|++||+++..++.|=...
T Consensus 103 ~~~p~la~~G--~~GvIrVid~~~~~~~~~---~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 103 TGNPFLAAGG--YLGVIRVIDVVSGQCSKN---YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCeeEEeec--ceeEEEEEecchhhhccc---eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3444444444 445578999999999998 88999999999988888 3 67889999999999999999999999
Q ss_pred cCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCcc-------ceEEE--cCC---------
Q 015220 320 FMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNT-------NNIYI--TSD--------- 376 (411)
Q Consensus 320 f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~-------n~i~I--s~D--------- 376 (411)
-+|...++.+..+ ..++|. .|-+|.+|.+. -+.-.-+|....|.|+-.+ .-+++ |.|
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 9999999999998 446666 99999999999 7777778888888887666 33333 444
Q ss_pred ---CCEEEEEecCC
Q 015220 377 ---QDLIISYCKAD 387 (411)
Q Consensus 377 ---qd~iiS~~~d~ 387 (411)
||+|+|+|-+.
T Consensus 258 rw~gd~ilSkscen 271 (385)
T KOG1034|consen 258 RWFGDFILSKSCEN 271 (385)
T ss_pred HHHhhheeecccCc
Confidence 79999998876
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=74.85 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=123.1
Q ss_pred eEEEEEeeCceEEEEec--cCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc--
Q 015220 216 IYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE-- 291 (411)
Q Consensus 216 ~ykVWdL~~Ys~iysLs--~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e-- 291 (411)
.+-|||++--.++.+++ -+.+..++.+|.---++..+... =.|-|+|+-++++|+....-+.. .. |--.||
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD-rsIvLyD~R~~~Pl~KVi~~mRT-N~---IswnPeaf 242 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD-RSIVLYDLRQASPLKKVILTMRT-NT---ICWNPEAF 242 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC-CceEEEecccCCccceeeeeccc-cc---eecCcccc
Confidence 47899999999997777 56899999985543334444333 34779999999999986643332 22 333333
Q ss_pred eeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCceee--eeccccccCC
Q 015220 292 KLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGELVT--SFEDHLLWHP 364 (411)
Q Consensus 292 kllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Gel~~--s~e~H~~~~~ 364 (411)
+-..+.|+++|-.+|++. .++.. -.++|-+|+.-++.| +=|+|+ =|+||||++.+.---| =-+..+-
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~~---v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq--- 316 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPLN---VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ--- 316 (433)
T ss_pred ceeeccccccceehhhhhhcccch---hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh---
Confidence 347889999999999998 44444 678899999999999 669999 7999999999933211 2333444
Q ss_pred CCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 365 ~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.+-.|.-|-|-++|||||.|- .|.+|-
T Consensus 317 --~V~~Vk~S~Dskyi~SGSdd~----------nvRlWk 343 (433)
T KOG0268|consen 317 --HVFCVKYSMDSKYIISGSDDG----------NVRLWK 343 (433)
T ss_pred --eeeEEEEeccccEEEecCCCc----------ceeeee
Confidence 455788999999999999986 899985
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00068 Score=69.15 Aligned_cols=190 Identities=14% Similarity=0.204 Sum_probs=135.7
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc-----CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc-----
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT----- 268 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-----~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~----- 268 (411)
|...+-.-|++.+.|.++|.||.++..++-.+-+ ++|.+|-+| +|-.+|..---| .||+|+|.+-+
T Consensus 143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh---slk~W~l~~~~f~~~l 219 (385)
T KOG1034|consen 143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH---SLKLWRLNVKEFKNKL 219 (385)
T ss_pred cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc---eEEEEecChhHHhhhh
Confidence 4455666788899999999999999999977652 399999999 888877655444 48999998221
Q ss_pred --------------------EEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEc-ccceEEE-eec--------c
Q 015220 269 --------------------VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV-RNFELTE-VSR--------T 318 (411)
Q Consensus 269 --------------------~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL-~t~e~~~-v~~--------T 318 (411)
+...|.--=.|+..||.+.-++|.+|=|+-.+-|-.|-- +=+|.+. |.+ .
T Consensus 220 E~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~ 299 (385)
T KOG1034|consen 220 ELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG 299 (385)
T ss_pred hhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeee
Confidence 111221223577999999999999999999999999977 2233311 111 1
Q ss_pred ccCCCc---eEEEEeec---eeEEEE-ecCeEEEEecC-Cce--eeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 319 EFMTPS---AFIFLYEN---QLFLTF-RNRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 319 ~f~hps---AfifLy~s---qlFlSf-sd~tI~iWn~~-Gel--~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
.|.-|. ||+=.+.. ..++-+ +.++|-+|||+ -|+ .+|+.-|+. .-.+.....|.||-+|+.-|.|.
T Consensus 300 ~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~---~~tVRQ~sfS~dgs~lv~vcdd~- 375 (385)
T KOG1034|consen 300 EFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS---GSTVRQTSFSRDGSILVLVCDDG- 375 (385)
T ss_pred EeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc---cceeeeeeecccCcEEEEEeCCC-
Confidence 222333 45554444 445555 89999999999 444 557776665 33678889999999999999886
Q ss_pred CCccccCCceEEEeeec
Q 015220 389 DDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~ 405 (411)
+|==||-.
T Consensus 376 ---------~Vwrwdrv 383 (385)
T KOG1034|consen 376 ---------TVWRWDRV 383 (385)
T ss_pred ---------cEEEEEee
Confidence 87777743
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00069 Score=73.21 Aligned_cols=271 Identities=15% Similarity=0.179 Sum_probs=172.2
Q ss_pred ehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 015220 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (411)
Q Consensus 108 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 187 (411)
++-=..-|..++|-..||+ |.=-..-|++|+||=+|...+.-|. +.+-..+ .|---.+==..|..|+..+ +|+
T Consensus 415 lasGsdDGtvriWEi~TgR--cvr~~~~d~~I~~vaw~P~~~~~vL--AvA~~~~-~~ivnp~~G~~~e~~~t~e--ll~ 487 (733)
T KOG0650|consen 415 LASGSDDGTVRIWEIATGR--CVRTVQFDSEIRSVAWNPLSDLCVL--AVAVGEC-VLIVNPIFGDRLEVGPTKE--LLA 487 (733)
T ss_pred eeecCCCCcEEEEEeecce--EEEEEeecceeEEEEecCCCCceeE--EEEecCc-eEEeCccccchhhhcchhh--hhh
Confidence 3333445788899999998 7777788999999999998876665 3333332 1211111012233322211 122
Q ss_pred eecccCCC--CeEEe-----eCCC-C-eEEEeecC---------CCeEEEEEee----CceEEEEeccCcee-EEEEeCC
Q 015220 188 ESESLKWP--GFVEF-----DDVN-G-KVLTYSAQ---------DSIYKVFDLK----NYTMLYSISDKNVQ-EIKISPG 244 (411)
Q Consensus 188 ~~~~l~~P--gfvEF-----Dd~N-G-kiLt~~~~---------ds~ykVWdL~----~Ys~iysLs~~~Vq-eIkISdG 244 (411)
+...-..| .-|-. |+.- | ++.+.+.. ++.|-.=-+- ..-.|++||....| -++-|.|
T Consensus 488 ~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG 567 (733)
T KOG0650|consen 488 SAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG 567 (733)
T ss_pred cCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCC
Confidence 22100000 00000 0000 1 12221111 2222222222 23367888866444 2444544
Q ss_pred EEE-EEEecCC------CceeeEEEEecCCcEEeEeeeccccCCcceeeeeec--ceeEEeecCceeeEEEccc-ceEEE
Q 015220 245 IML-LIFTKAS------GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQENENLQILDVRN-FELTE 314 (411)
Q Consensus 245 ~~L-ai~q~t~------~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~~~LkI~dL~t-~e~~~ 314 (411)
+.. +.++++. .+.++.|+||..+++.++ |+.-.|-|.+|.+++ |++++-+-+.++--+||.- .++++
T Consensus 568 ~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKk---L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk 644 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKK---LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYK 644 (733)
T ss_pred ceeEEEecCCCceEEEEeccceEEEehhHHHHHHH---HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhH
Confidence 443 4455555 356899999999999999 889999999999999 9999999999999999965 57887
Q ss_pred eeccccCCCceEEEEeec---eeEEEEec-CeEEEEecC--Cc--------eeeeeccccccCCCCccceEEEcCCCCEE
Q 015220 315 VSRTEFMTPSAFIFLYEN---QLFLTFRN-RTVAVWNFR--GE--------LVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (411)
Q Consensus 315 v~~T~f~hpsAfifLy~s---qlFlSfsd-~tI~iWn~~--Ge--------l~~s~e~H~~~~~~c~~n~i~Is~Dqd~i 380 (411)
|+--|+.|+-.|+.- .||.|++| +++-|+.=. -| +|..|.+|..-...|....+ --|.|-.+
T Consensus 645 ---~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~-wHP~qpWL 720 (733)
T KOG0650|consen 645 ---TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI-WHPRQPWL 720 (733)
T ss_pred ---HhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec-ccCCCceE
Confidence 888899999988866 78999966 888887533 33 46688999984444444333 57999999
Q ss_pred EEEecCCCCCccccCCceEEEe
Q 015220 381 ISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 381 iS~~~d~~~~~~~~~~gtI~i~ 402 (411)
+|..+|. ||.||
T Consensus 721 fsAGAd~----------tirlf 732 (733)
T KOG0650|consen 721 FSAGADG----------TIRLF 732 (733)
T ss_pred EecCCCc----------eEEee
Confidence 9999996 99988
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0066 Score=61.62 Aligned_cols=174 Identities=14% Similarity=0.080 Sum_probs=99.1
Q ss_pred CCCeEEEeecC---CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~~---ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|... ...+.+||+.+.+... |++ ..+.....| ||..|++........-|-++++.+|+. .. +
T Consensus 205 PDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~---l 279 (427)
T PRK02889 205 PDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RR---L 279 (427)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EE---C
Confidence 68888887654 3468999999887533 332 255678899 888787765555555666677776663 33 2
Q ss_pred cccCCcceeeeeecce--eEEeec-CceeeEEEc--ccceEEEeeccccCCCceEEEEeeceeEEEEecC---eEEEEec
Q 015220 277 LHRNKKVDFIEQFNEK--LLVKQE-NENLQILDV--RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNR---TVAVWNF 348 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek--llIKQe-~~~LkI~dL--~t~e~~~v~~T~f~hpsAfifLy~sqlFlSfsd~---tI~iWn~ 348 (411)
..+.........++|+ ++..+. +...+||.+ .+++...+....-........-..+.+.++-.++ .|.+||+
T Consensus 280 t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 280 TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 2332222334566665 444443 345677755 5566555421100000110011122333322222 6999999
Q ss_pred CCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 349 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 349 ~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.+.-.+.+..+. .......+|||+.|+..+.+.
T Consensus 360 ~~g~~~~lt~~~------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 360 ATGQVTALTDTT------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCeEEccCCC------CccCceECCCCCEEEEEEecC
Confidence 944344554432 235778999999999988765
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00071 Score=71.08 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=129.6
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCc--eEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y--s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
=+.|-..|--.+.+.+-|+++|.=|+++- +.+|++.++ -+..+-++ +..++++.+.-. .+.+|++-++.-..
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTDGSEY 315 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc---ceEEEEeecCCccc
Confidence 35677777777777888999999999984 478888544 56777777 555666666655 88999999877643
Q ss_pred EeeeccccCCcceeeeeec---ceeEEeecCceeeEEEccc----ceEEEeeccccCCCceEEEEeec----eeEEEEec
Q 015220 272 SFNHLLHRNKKVDFIEQFN---EKLLVKQENENLQILDVRN----FELTEVSRTEFMTPSAFIFLYEN----QLFLTFRN 340 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~---ekllIKQe~~~LkI~dL~t----~e~~~v~~T~f~hpsAfifLy~s----qlFlSfsd 340 (411)
. ++.-|+|+|.-|.+.+ ..+.-++-++..+|||+++ .+++. ....|..++...|.| .|.-|..|
T Consensus 316 ~--~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l---st~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 316 E--NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL---STLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred h--hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcce---ecccccceeeeeEEcCCCCceEeeccC
Confidence 3 3666778998888764 5667778899999999998 22222 344699999999998 65555599
Q ss_pred CeEEEEec----C-Cceeee------ecccc-----ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 341 RTVAVWNF----R-GELVTS------FEDHL-----LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 341 ~tI~iWn~----~-Gel~~s------~e~H~-----~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
++|||||- . -+++++ ...|+ .|+|+| -+|++|--.+ .|.|+|-
T Consensus 391 ~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~-----------~li~vg~~~r----------~IDv~~~ 449 (498)
T KOG4328|consen 391 NEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY-----------NLIVVGRYPR----------PIDVFDG 449 (498)
T ss_pred CceEEeecccccccCCccceeeccCcccccccchhheeCCCc-----------cEEEEeccCc----------ceeEEcC
Confidence 99999998 3 223332 11232 356654 4566666555 5777777
Q ss_pred ccee
Q 015220 405 MFVT 408 (411)
Q Consensus 405 ~tGk 408 (411)
..|+
T Consensus 450 ~~~q 453 (498)
T KOG4328|consen 450 NGGQ 453 (498)
T ss_pred CCCE
Confidence 7766
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0045 Score=62.74 Aligned_cols=184 Identities=13% Similarity=0.091 Sum_probs=116.4
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEEecc-CceeE-EEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQE-IKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iysLs~-~~Vqe-IkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
-.++....++.+.|.|..+.+.+-.|.. .++.. ++.| ||-.+.+.... -.+.++|+.++++++++.- -..
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd---g~vsviD~~~~~~v~~i~~----G~~ 79 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD---GTVSVIDLATGKVVATIKV----GGN 79 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT---SEEEEEETTSSSEEEEEE-----SSE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC---CeEEEEECCcccEEEEEec----CCC
Confidence 3456788899999999999999999974 46644 5667 79888887653 3799999999999999542 334
Q ss_pred ceeeeeeccee--EEe-ecCceeeEEEcccceEEEeeccccC-------CCceEEEEeeceeEE-EEec-CeEEEEecC-
Q 015220 283 VDFIEQFNEKL--LVK-QENENLQILDVRNFELTEVSRTEFM-------TPSAFIFLYENQLFL-TFRN-RTVAVWNFR- 349 (411)
Q Consensus 283 I~FLE~~~ekl--lIK-Qe~~~LkI~dL~t~e~~~v~~T~f~-------hpsAfifLy~sqlFl-Sfsd-~tI~iWn~~- 349 (411)
..-+++++|+- ++. ...+.+.|+|..+.|..+.=+|.-. ...|+++...+..|+ +..+ +.|-+=|..
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 55688888754 333 3789999999999998883333221 123555555555454 5544 555444555
Q ss_pred C-ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 G-el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
. .+..+..+.-. .-.-..++|||..++.+.... ..|-++|.+++|+.
T Consensus 160 ~~~~~~~~i~~g~-----~~~D~~~dpdgry~~va~~~s---------n~i~viD~~~~k~v 207 (369)
T PF02239_consen 160 PKNLKVTTIKVGR-----FPHDGGFDPDGRYFLVAANGS---------NKIAVIDTKTGKLV 207 (369)
T ss_dssp SSCEEEEEEE--T-----TEEEEEE-TTSSEEEEEEGGG---------TEEEEEETTTTEEE
T ss_pred ccccceeeecccc-----cccccccCcccceeeeccccc---------ceeEEEeeccceEE
Confidence 3 34444433222 345689999999877765443 18888888888864
|
... |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0014 Score=73.25 Aligned_cols=181 Identities=10% Similarity=0.090 Sum_probs=132.8
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCce-EEEE--eccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCc---EEeEeee
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYT-MLYS--ISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT---VLKSFNH 275 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys-~iys--Ls~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~---~L~t~~~ 275 (411)
|++|+-|+.++.|+.+|+|+-.+-+ .=-+ ++.+-|..++.--+.|++-.... -++++.+..|+ +|..|.
T Consensus 22 d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~----tv~~y~fps~~~~~iL~Rft- 96 (933)
T KOG1274|consen 22 DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQN----TVLRYKFPSGEEDTILARFT- 96 (933)
T ss_pred cCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccc----eEEEeeCCCCCccceeeeee-
Confidence 4567788889999999999876652 1111 24556666666655655443322 35666666554 556655
Q ss_pred ccccCCcceeeeeecc--eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
-|+..+...++ ++...+++--+|+.|+-.+.... ++-+|..-+..|... +++++- .||+|.||+++
T Consensus 97 -----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~---~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 97 -----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK---VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred -----ccceEEEEecCCcEEEeecCceeEEEEeccccchhe---eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 47788999888 66777889999999999998888 566688888888766 555555 89999999999
Q ss_pred -CceeeeeccccccCCCCcc-------ceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 350 -GELVTSFEDHLLWHPDCNT-------NNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 350 -Gel~~s~e~H~~~~~~c~~-------n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|.+.-++.+=.. |+. +.++-+|||-.+.-+|.|+ +|+|++..+++.
T Consensus 169 ~~~~~~tl~~v~k----~n~~~~s~i~~~~aW~Pk~g~la~~~~d~----------~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 169 DGILSKTLTGVDK----DNEFILSRICTRLAWHPKGGTLAVPPVDN----------TVKVYSRKGWEL 222 (933)
T ss_pred cchhhhhcccCCc----cccccccceeeeeeecCCCCeEEeeccCC----------eEEEEccCCcee
Confidence 998888887655 333 3477899987788888888 999999888764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00012 Score=74.60 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=106.4
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE--eecCceeeEEE------ccc---------------------
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILD------VRN--------------------- 309 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~d------L~t--------------------- 309 (411)
..||+||+|++|.+ .-||.--|+.|..++..+|+ +++++.--||- +-+
T Consensus 172 A~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~ 248 (481)
T KOG0300|consen 172 ARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR 248 (481)
T ss_pred eeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence 57999999999999 77999999999999999854 67888888885 111
Q ss_pred ---------ceEEEeecccc-CCCceEEE---EeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEc
Q 015220 310 ---------FELTEVSRTEF-MTPSAFIF---LYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 374 (411)
Q Consensus 310 ---------~e~~~v~~T~f-~hpsAfif---Ly~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is 374 (411)
|-.++||-+.+ +|..-+++ |+..+--+|. .|+|--+||.. ||+|-.|.||.. +.+..---
T Consensus 249 d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-----ELtHcstH 323 (481)
T KOG0300|consen 249 DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-----ELTHCSTH 323 (481)
T ss_pred ccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch-----hccccccC
Confidence 22566665544 56666665 5555667777 88999999999 999999999998 88888889
Q ss_pred CCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 375 SDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 375 ~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|.|.|.+..|+|. |..+||..
T Consensus 324 ptQrLVvTsSrDt----------TFRLWDFR 344 (481)
T KOG0300|consen 324 PTQRLVVTSSRDT----------TFRLWDFR 344 (481)
T ss_pred CcceEEEEeccCc----------eeEeccch
Confidence 9999999999999 99999975
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0024 Score=58.83 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=89.3
Q ss_pred eEEEEEeeC-ce--EEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec
Q 015220 216 IYKVFDLKN-YT--MLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (411)
Q Consensus 216 ~ykVWdL~~-Ys--~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ 290 (411)
...+|.++. .. ...++..+ .|.++.-| +|..+|+.....+. -+.||+++ ++.+.++ + +.+++.|.-+|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~-~v~lyd~~-~~~i~~~----~-~~~~n~i~wsP 110 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA-KVTLYDVK-GKKIFSF----G-TQPRNTISWSP 110 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCc-ccEEEcCc-ccEeEee----c-CCCceEEEECC
Confidence 345666622 22 33444444 59999999 67777666554444 89999997 8888773 3 46778888888
Q ss_pred ceeEEeec-----CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-------ecCeEEEEecCCceeee
Q 015220 291 EKLLVKQE-----NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-------RNRTVAVWNFRGELVTS 355 (411)
Q Consensus 291 ekllIKQe-----~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-------sd~tI~iWn~~Gel~~s 355 (411)
.+.++.-. ...|.+||+.+.+.+. .+.|+.+ ..++-+ +.|+|- .|+.++||+++|.++..
T Consensus 111 ~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~~~~-t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 111 DGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEHSDA-TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCEEee----ccccCcE-EEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 77655442 2359999999988885 3446554 344443 666665 27999999999999876
Q ss_pred ecc
Q 015220 356 FED 358 (411)
Q Consensus 356 ~e~ 358 (411)
..-
T Consensus 186 ~~~ 188 (194)
T PF08662_consen 186 KPF 188 (194)
T ss_pred cch
Confidence 543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00077 Score=68.30 Aligned_cols=174 Identities=13% Similarity=0.119 Sum_probs=118.5
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCc-eEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y-s~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
-||....+..||+..+.|+++|+||.+-- .++. ++|.++++..-...-
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~-------------------------------~lD~hn~k~~p~~~~ 241 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR-------------------------------VLDQHNTKRPPILKT 241 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeE-------------------------------EeecccCccCccccc
Confidence 38999999999999999999999998753 2333 333333332222111
Q ss_pred ccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEee-----ccccCCCceEEEEeeceeEEEE-ecCeEEEEe
Q 015220 276 LLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVS-----RTEFMTPSAFIFLYENQLFLTF-RNRTVAVWN 347 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~-----~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn 347 (411)
.-.|..+++-++-..+.. ..+--+.++++||..+|+-.+++ +...-||.--+--.-+..|+-| -++++.+.+
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~ 321 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLN 321 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEE
Confidence 345667777777776665 55567899999999998877632 2222222222222233567767 678999999
Q ss_pred cC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCC-ceEEEeeecc
Q 015220 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMF 406 (411)
Q Consensus 348 ~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~-gtI~i~~i~t 406 (411)
+- |+.+|.+..|+- ++|-.+-.||=+..++|.-|-..+.|...- -..++.|.+|
T Consensus 322 ~~sgs~ir~l~~h~k-----~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l~~pt~~~d~~t 377 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHLK-----RINCAAYRPDFEQCFTGDMNGNIYMWSPALKSPTKISDLET 377 (397)
T ss_pred ccCceEEEeeecccc-----eeeEEeecCchhhhhccccCCccccccccccCCcccccccc
Confidence 98 999999999966 777778899999999998887655555422 3344445444
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.039 Score=55.00 Aligned_cols=228 Identities=14% Similarity=0.158 Sum_probs=127.4
Q ss_pred eeccceehhhhccccceeeecccccEEEEEeCCCCceE----------EEEEeecCCCeEEEEEeEecCCCceeeeEeee
Q 015220 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVI----------RSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (411)
Q Consensus 102 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evI----------rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 171 (411)
+.+.+.|++...+|.-.|||..||+.+-..+...+.-+ -++.+ .++.+++.+ .-..|.|--.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~-----~~g~l~ald~- 137 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS-----EKGQVYALNA- 137 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc-----CCCEEEEEEC-
Confidence 34688999999999999999999999887766542111 01111 123333321 1123444322
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--c-----eeEEEEeCC
Q 015220 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--N-----VQEIKISPG 244 (411)
Q Consensus 172 ~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~-----VqeIkISdG 244 (411)
.-|++-=..++ .......|-.. +|++++ ...++.+--+|.+|.+.+.+.... . ...-.+.+|
T Consensus 138 ----~tG~~~W~~~~-~~~~~ssP~v~-----~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~ 206 (394)
T PRK11138 138 ----EDGEVAWQTKV-AGEALSRPVVS-----DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFG 206 (394)
T ss_pred ----CCCCCcccccC-CCceecCCEEE-----CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECC
Confidence 22333111111 11122334221 355554 445677888888888888666533 1 122233345
Q ss_pred EEEEEEecCCCceeeEEEEecCCcEEeEeeecccc-------CCcc-eeeeeecceeEEeecCceeeEEEcccceEEEee
Q 015220 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR-------NKKV-DFIEQFNEKLLVKQENENLQILDVRNFELTEVS 316 (411)
Q Consensus 245 ~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h-------~K~I-~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~ 316 (411)
.+++ ... +. .+.-++++||+.++++..--+. -..+ -.-.+.++.+++...+..|..+|+.+|+..=
T Consensus 207 ~v~~-~~~-~g--~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W-- 280 (394)
T PRK11138 207 GAIV-GGD-NG--RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW-- 280 (394)
T ss_pred EEEE-EcC-CC--EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE--
Confidence 4333 221 22 3556889999999875421110 0000 1122457888888888999999999986542
Q ss_pred ccccCCCceEEEEeeceeEEEEecCeEEEEecC-Cceeee
Q 015220 317 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTS 355 (411)
Q Consensus 317 ~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s 355 (411)
...+..+.. ..++...+|+.-.++.+...|.. |+.+=+
T Consensus 281 ~~~~~~~~~-~~~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 281 KREYGSVND-FAVDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred eecCCCccC-cEEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 123333322 23455688888889999999998 876543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0013 Score=67.32 Aligned_cols=173 Identities=19% Similarity=0.153 Sum_probs=127.0
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec---CCc--EEeEe
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE---DGT--VLKSF 273 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~---tG~--~L~t~ 273 (411)
.-|++.+.+++.|.++-+|||+ .+.|.+|.-+ .-...++| +|-|+|..-=|.. +|||-+- +|+ ..+..
T Consensus 196 A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD---VkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 196 AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD---VKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC---ceEEEEEeccCcchhhhhhh
Confidence 3578999999999999999999 8899999866 45578899 9999999877654 7888874 443 23333
Q ss_pred eeccccCCcceeeeeeccee--EEeecCceeeEEEcccc-eEEEeeccccCCCceEEE--------Eeec---eeEEEEe
Q 015220 274 NHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIF--------LYEN---QLFLTFR 339 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfif--------Ly~s---qlFlSfs 339 (411)
-.|-||+.-|-..+-+|+-- .-.+.+.+++|||..=. +.-+=|.++..-| ++.+ |.-+ ++|..-.
T Consensus 272 f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-~pl~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-APLHAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred heeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC-cchhhcCCCceEEEeCCCCcEEEeec
Confidence 34889999999999998754 66789999999997431 0001122332222 3333 2222 5565556
Q ss_pred cCeEEEEecC-Cceeeeecc-ccccCCCCccceEEEcCCCCEEEEEe
Q 015220 340 NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e~-H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
-.++.+++-+ |+-+-+||+ |.. -+.+|.-++||..|+++.
T Consensus 351 gs~l~~~~se~g~~~~~~e~~h~~-----~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 351 GSDLKVFASEDGKDYPELEDIHST-----TISSISYSSDGKYIATCG 392 (420)
T ss_pred CCceEEEEcccCccchhHHHhhcC-----ceeeEEecCCCcEEeeec
Confidence 6789999998 999999987 444 688899999999999854
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.014 Score=60.07 Aligned_cols=196 Identities=10% Similarity=0.098 Sum_probs=111.0
Q ss_pred cccCCCCeEEeeCCCCeEEEeecC---CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~---ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
+.+..|.| .+||+-|++... ...+.+||+.+.+.. .|+. ......+.| ||..|++........-|.+++
T Consensus 218 ~~~~~p~w----SPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 218 EPLMSPAW----SPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CcccCceE----CCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 34555666 578888887643 346788898886642 2332 234578889 888888776666777888999
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeecce--eEEee---cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQ---e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf 338 (411)
+.+|+...- ..+.........++|+ +++.+ +...|-++|+.+++..++........+....-..+.++++-
T Consensus 293 l~tg~~~~l----t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 293 IATKALTRI----TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred CCCCCeEEC----ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 999986442 2222233444556664 44444 23456667888888777631111011111111122555544
Q ss_pred -ecCeEEE--EecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 339 -RNRTVAV--WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 -sd~tI~i--Wn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.++...| +|+.+.-++.+..... ......+|||+.|+-.+.+. +.+.|.++|. +|+
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~lt~~~~------d~~ps~spdG~~I~~~~~~~-------g~~~l~~~~~-~G~ 427 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQVLTSTRL------DESPSVAPNGTMVIYSTTYQ-------GKQVLAAVSI-DGR 427 (448)
T ss_pred ecCCceEEEEEECCCCCeEEccCCCC------CCCceECCCCCEEEEEEecC-------CceEEEEEEC-CCC
Confidence 3444444 6776333344443311 22346899999887655542 3345777775 454
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.067 Score=52.50 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=130.6
Q ss_pred eeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC-
Q 015220 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP- 180 (411)
Q Consensus 102 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~- 180 (411)
+...+.|++-...|.-.|||..||+.+=.... ++++.-+..+. ++.+++.+ .+ ..|.|-.. +.|+.
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~~~p~v~--~~~v~v~~---~~--g~l~a~d~-----~tG~~~ 168 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKELWRAKL-SSEVLSPPLVA--NGLVVVRT---ND--GRLTALDA-----ATGERL 168 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcEeeeecc-CceeecCCEEE--CCEEEEEC---CC--CeEEEEEc-----CCCcee
Confidence 34578888888899999999999997644433 23333322221 34444422 11 23444322 22222
Q ss_pred ---CCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC------c-------eeEEEEeCC
Q 015220 181 ---DAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------N-------VQEIKISPG 244 (411)
Q Consensus 181 ---~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~------~-------VqeIkISdG 244 (411)
....+-+.-.....|... +|. +.....++.+..+|+++.+.+.+..-. + .....+.++
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~-----~~~-v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA-----DGG-VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred eEEccCCCceeecCCCCCEEE-----CCE-EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 001111111112334332 133 344455677778888888877543210 1 122334466
Q ss_pred EEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEE-EeeccccCCC
Q 015220 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELT-EVSRTEFMTP 323 (411)
Q Consensus 245 ~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~-~v~~T~f~hp 323 (411)
.+++.... -.+..|+++||+++++... +. .-...+.++.+++..++..|.++|..+|+.. +.. .....
T Consensus 243 ~vy~~~~~----g~l~a~d~~tG~~~W~~~~--~~---~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~--~~~~~ 311 (377)
T TIGR03300 243 QVYAVSYQ----GRVAALDLRSGRVLWKRDA--SS---YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKND--ELKYR 311 (377)
T ss_pred EEEEEEcC----CEEEEEECCCCcEEEeecc--CC---ccCceEeCCEEEEECCCCeEEEEECCCCcEEEccc--cccCC
Confidence 65544321 2588899999999998652 11 1223467888999999999999999999764 211 11111
Q ss_pred -ceEEEEeeceeEEEEecCeEEEEecC-Cceeeeecccc
Q 015220 324 -SAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHL 360 (411)
Q Consensus 324 -sAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~ 360 (411)
.+-..++...+|+.-.++.+.+||.+ |+++.++.-|-
T Consensus 312 ~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 312 QLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 11112355566666699999999998 99998876443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00071 Score=71.20 Aligned_cols=171 Identities=13% Similarity=0.216 Sum_probs=125.1
Q ss_pred CCe-EEEeecCCCeEEEEEeeCce-----EEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 204 NGK-VLTYSAQDSIYKVFDLKNYT-----MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 204 NGk-iLt~~~~ds~ykVWdL~~Ys-----~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
||. ++..++...-|-+|||.+-+ ++|-....-+.-+++| +|.|||+-- +--+|.|++-.|++.+++|++
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G---~~G~I~lLhakT~eli~s~Ki- 343 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG---NNGHIHLLHAKTKELITSFKI- 343 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc---cCceEEeehhhhhhhhheeee-
Confidence 888 77888889999999999866 4466665578889999 999888743 446788999999999999884
Q ss_pred cccCCcceeeeeecceeEEee-cCceeeEEEcccceEEEeeccccCCCceEEE--Eeec---eeEEEE-ecCeEEEEecC
Q 015220 277 LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIF--LYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfif--Ly~s---qlFlSf-sd~tI~iWn~~ 349 (411)
=|.-+.+-|- +.++.++.+ +...+-+|||+...+.. .|..--+++- +..+ .+|+++ ..|-|-|||.+
T Consensus 344 eG~v~~~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~----rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 344 EGVVSDFTFS--SDSKELLASGGTGEVYVWNLRQNSCLH----RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ccEEeeEEEe--cCCcEEEEEcCCceEEEEecCCcceEE----EEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 4666666666 555666665 66799999999986654 2322222221 2222 578899 66799999965
Q ss_pred C-------ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCC
Q 015220 350 G-------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSD 389 (411)
Q Consensus 350 G-------el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~ 389 (411)
- .|++++..=- +.++++..++|.+++.-+|..+++
T Consensus 418 s~~~s~~PkPik~~dNLt-----t~Itsl~Fn~d~qiLAiaS~~~kn 459 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLT-----TAITSLQFNHDAQILAIASRVKKN 459 (514)
T ss_pred hhhccCCCCchhhhhhhh-----eeeeeeeeCcchhhhhhhhhcccc
Confidence 2 2666664433 488999999999999888877654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00091 Score=68.34 Aligned_cols=133 Identities=19% Similarity=0.259 Sum_probs=102.2
Q ss_pred eeEEEEecCCcEEeEeeeccccCCcceeeee-ecceeEEeecCceeeEEEcccceEEE-eeccccCCCceEEEEeec---
Q 015220 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYEN--- 332 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~LL~h~K~I~FLE~-~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~s--- 332 (411)
.++|++..||+.|..|+-.=++-..|.|+-- .+..++..+-+..+++||+++....- +.-|.. .|.+|++++.+
T Consensus 51 sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~-~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 51 SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ-SGTPFICLDLNCKK 129 (376)
T ss_pred eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC-CCCcceEeeccCcC
Confidence 3799999999999999988888888888876 77888889999999999999955443 333442 35899999986
Q ss_pred eeEEE-----EecCeEEEEecC--Cceeeee-ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 333 QLFLT-----FRNRTVAVWNFR--GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 333 qlFlS-----fsd~tI~iWn~~--Gel~~s~-e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+++.. -++-.+-+||.| -.+++.+ |-|.-. .|--=|--.|-++++|||.|- -|+++|+
T Consensus 130 ~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD----VT~lrFHP~~pnlLlSGSvDG----------LvnlfD~ 195 (376)
T KOG1188|consen 130 NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD----VTQLRFHPSDPNLLLSGSVDG----------LVNLFDT 195 (376)
T ss_pred CeEEeccccccCceEEEEEEeccccchhhhhhhhccCc----ceeEEecCCCCCeEEeecccc----------eEEeeec
Confidence 55544 477899999999 3367755 455552 222226667889999999995 8999987
Q ss_pred c
Q 015220 405 M 405 (411)
Q Consensus 405 ~ 405 (411)
+
T Consensus 196 ~ 196 (376)
T KOG1188|consen 196 K 196 (376)
T ss_pred C
Confidence 5
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.013 Score=60.20 Aligned_cols=175 Identities=14% Similarity=0.092 Sum_probs=98.4
Q ss_pred eEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce-
Q 015220 216 IYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK- 292 (411)
Q Consensus 216 ~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek- 292 (411)
.+.++|......-+-.. .+.+...+.| ||..|+.....+...-|.++++.+|+...-.. .-+. ......++|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g~---~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPGI---NGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCCC---cCCeeECCCCC
Confidence 34444765554322222 3477888999 89888877666677789999999998643211 1111 2234566665
Q ss_pred -eEE-eecCc--eeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-ecCeEEE--EecC-Cceee-eecccccc
Q 015220 293 -LLV-KQENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-RNRTVAV--WNFR-GELVT-SFEDHLLW 362 (411)
Q Consensus 293 -llI-KQe~~--~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-sd~tI~i--Wn~~-Gel~~-s~e~H~~~ 362 (411)
+++ ..++. .|-+||+.+++...+..... ......|-. .+.++++- +++...+ +|+. |+..+ +++++..
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~- 352 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN- 352 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC-
Confidence 333 33333 58888999999887643211 111111211 22444443 4444444 5666 55433 3444332
Q ss_pred CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
....+||||+.|+-...+. +...|-++|+.+|+.
T Consensus 353 ------~~~~~SpDG~~l~~~~~~~-------g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 353 ------LGGSITPDGRSMIMVNRTN-------GKFNIARQDLETGAM 386 (448)
T ss_pred ------cCeeECCCCCEEEEEEecC-------CceEEEEEECCCCCe
Confidence 2357899999987654432 223566678888864
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0047 Score=61.79 Aligned_cols=177 Identities=15% Similarity=0.173 Sum_probs=122.6
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC----ceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~----~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
.-+|.-|++++-|++.+||++..-.++.++... -|-+.--. +..|...+ .- =.+.+|++-.|++...+.
T Consensus 29 n~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-~d---k~ir~wd~r~~k~~~~i~ 104 (313)
T KOG1407|consen 29 NCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-GD---KTIRIWDIRSGKCTARIE 104 (313)
T ss_pred cccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-CC---ceEEEEEeccCcEEEEee
Confidence 368999999999999999999988777665521 33333332 22222211 11 247899999999999855
Q ss_pred eccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEe---ecee-EEEEecCeEEEEec
Q 015220 275 HLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY---ENQL-FLTFRNRTVAVWNF 348 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy---~sql-FlSfsd~tI~iWn~ 348 (411)
. +.+=-++--++++- .+-..+.-|...|.++.++.. ++-+ +..+.=+. -+.+ |||=..|+|.|-..
T Consensus 105 ~----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~---~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 105 T----KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN---EEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred c----cCcceEEEEcCCCCEEEEecCcccEEEEEecccceee---hhcc-cceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 2 23334455555554 334467789999999988876 3321 11111111 1244 55558899999998
Q ss_pred C-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 349 ~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
- -++|.++.-|-. +-=-|.++|||+.+..|++|. .+-+||+.
T Consensus 177 psLkpv~si~AH~s-----nCicI~f~p~GryfA~GsADA----------lvSLWD~~ 219 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPS-----NCICIEFDPDGRYFATGSADA----------LVSLWDVD 219 (313)
T ss_pred cccccccccccCCc-----ceEEEEECCCCceEeeccccc----------eeeccChh
Confidence 8 889999999986 445789999999999999999 88899975
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.027 Score=56.48 Aligned_cols=183 Identities=13% Similarity=0.110 Sum_probs=105.2
Q ss_pred CCCeEEEeecCC---CeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSAQD---SIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~~d---s~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|...+ ..+-+||+.+.+.- .|+. ..+.....| ||..|++........-|.++++.+|+... +
T Consensus 208 pDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----l 282 (430)
T PRK00178 208 PDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----V 282 (430)
T ss_pred CCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----c
Confidence 678888776533 46788899887642 3332 245578899 88888876655666778899999998643 2
Q ss_pred cccCCcceeeeeecc--eeEEeec---CceeeEEEcccceEEEeeccccCCCceEEEEe--eceeEEEE-ecC--eEEEE
Q 015220 277 LHRNKKVDFIEQFNE--KLLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTF-RNR--TVAVW 346 (411)
Q Consensus 277 L~h~K~I~FLE~~~e--kllIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy--~sqlFlSf-sd~--tI~iW 346 (411)
..+........-+++ .+++.++ ...|-++|+.+++..++. .-+...+...+. .+.+.++- .++ .|.+|
T Consensus 283 t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt--~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 283 TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT--FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 222222222344544 4455443 346777789899877653 111111111111 12343333 222 58888
Q ss_pred ecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 347 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 347 n~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|+.+.-.+.+.. .. ......+||||+.|+-.+.+. +.+.|-+.++.
T Consensus 361 dl~tg~~~~lt~-~~-----~~~~p~~spdg~~i~~~~~~~-------g~~~l~~~~~~ 406 (430)
T PRK00178 361 DLQRGSVRILTD-TS-----LDESPSVAPNGTMLIYATRQQ-------GRGVLMLVSIN 406 (430)
T ss_pred ECCCCCEEEccC-CC-----CCCCceECCCCCEEEEEEecC-------CceEEEEEECC
Confidence 998433344432 11 122457999999998777653 23455565553
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0006 Score=72.74 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=133.7
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEE--EEecc--CceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTML--YSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~--~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
+||+.|+-++.-+++-||||..=++= -+|+. -.-....+|+.-=|+++-++.. .|.||||++-++.+. +-|
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdG--nI~vwDLhnq~~Vrq---fqG 549 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDG--NIAVWDLHNQTLVRQ---FQG 549 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCC--cEEEEEcccceeeec---ccC
Confidence 68999999999999999999987643 33332 3777888886666777777765 578999999999999 789
Q ss_pred cCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCce
Q 015220 279 RNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGEL 352 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Gel 352 (411)
|.--.-.|.+++++-=|=. =++.++.|||+.+.-.. -..|.+.-|. |.+. .-++.+ .|+-++|-...|--
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlq---qhdF~SQIfS-Lg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ---QHDFSSQIFS-LGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh---hhhhhhhhee-cccCCCccceeeecccCcEEEEecCCcc
Confidence 9999999999977765544 46899999999875543 3333333332 3333 345555 77888887777765
Q ss_pred eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 353 ~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
.--+..|.. .+=++-.++=|+..+|-.||+--.-|.-.-|
T Consensus 626 kyqlhlheS-----cVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 626 KYQLHLHES-----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ceeeccccc-----EEEEEEecccCceeeecCchhhhhhccCccc
Confidence 555666665 5668889999999999999985555544433
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.03 Score=57.15 Aligned_cols=225 Identities=12% Similarity=0.119 Sum_probs=142.0
Q ss_pred eEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-
Q 015220 156 VYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK- 234 (411)
Q Consensus 156 v~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~- 234 (411)
|...+.|--.+|.. +....+.+...+. ++-.++|-.--|.-+=...++- -=+.+-.-|||=--+.++-+++=.
T Consensus 22 va~~~Gfriyn~~P--~ke~~~r~~~~~G-~~~veMLfR~N~laLVGGg~~p---ky~pNkviIWDD~k~~~i~el~f~~ 95 (346)
T KOG2111|consen 22 VATDTGFRIYNCDP--FKESASRQFIDGG-FKIVEMLFRSNYLALVGGGSRP---KYPPNKVIIWDDLKERCIIELSFNS 95 (346)
T ss_pred EEecCceEEEecCc--hhhhhhhccccCc-hhhhhHhhhhceEEEecCCCCC---CCCCceEEEEecccCcEEEEEEecc
Confidence 45556665566655 2222122223333 5555665554444332222220 012567889995556788888844
Q ss_pred ceeEEEEeCCEEEEEEecCCCceeeEEEEec-CCcEEeEeeeccccCCcceeeeeecceeEEeecC---ceeeEEEcccc
Q 015220 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNF 310 (411)
Q Consensus 235 ~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~---~~LkI~dL~t~ 310 (411)
+|..|+++...++++.. .-|.||.-. +=+.++.+.-.--+ |-+=.+-.+.++.+|+=-| ..+||.||...
T Consensus 96 ~I~~V~l~r~riVvvl~-----~~I~VytF~~n~k~l~~~et~~NP-kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 96 EIKAVKLRRDRIVVVLE-----NKIYVYTFPDNPKLLHVIETRSNP-KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred ceeeEEEcCCeEEEEec-----CeEEEEEcCCChhheeeeecccCC-CceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 99999999555444433 236777777 56666654422111 3344555666777777644 46999999987
Q ss_pred eEEEeeccccCCCceEEEEeec---eeEEEE-ecC-eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEe
Q 015220 311 ELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNR-TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 311 e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~-tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
+.- -|...-.|-+..-+++.+ .+.+|. ..| .|||||.+ |+++.-|-. + .+--++-.++.|||..+|...|
T Consensus 170 ~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR--G-~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 170 KPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR--G-VDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred CcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec--C-CchheEEEEEeCCCccEEEEEc
Confidence 762 111344588888888888 678888 344 69999999 999987643 3 2234688899999999998766
Q ss_pred cCCCCCccccCCceEEEeeecc
Q 015220 385 KADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 385 ~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.- ||++|+.|+-
T Consensus 246 dK----------gTlHiF~l~~ 257 (346)
T KOG2111|consen 246 DK----------GTLHIFSLRD 257 (346)
T ss_pred CC----------CeEEEEEeec
Confidence 54 5999999864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0022 Score=63.64 Aligned_cols=157 Identities=18% Similarity=0.272 Sum_probs=109.5
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCc---eEEEEeccC--ceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNY---TMLYSISDK--NVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Y---s~iysLs~~--~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
|.-|+-|+-++.|+++|||..++- ++|-+|+++ -|=.+.-- =|-+||...-... +-||.=++|+=.+..
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk---VIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK---VIIWKEENGRWTKAY 96 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce---EEEEecCCCchhhhh
Confidence 456888999999999999999984 578999988 34444433 3555555433332 458999999655543
Q ss_pred eeccccCCcceeeee--eccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee-----------------c
Q 015220 274 NHLLHRNKKVDFIEQ--FNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-----------------N 332 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~--~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~-----------------s 332 (411)
.+ -.|+.-|+.+.- +.-++ .-++.+.++.|++..+.--...++-.+.|+-.+..+-- .
T Consensus 97 e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 97 EH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 32 456677776653 44444 45678899999999987344444456667766655431 1
Q ss_pred eeEEEE-ecCeEEEEecC-Cc--eeeeecccccc
Q 015220 333 QLFLTF-RNRTVAVWNFR-GE--LVTSFEDHLLW 362 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Ge--l~~s~e~H~~~ 362 (411)
+.|+|+ .|++|.||.++ |+ +-++|++|..|
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence 559999 99999999999 44 66689999875
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.04 Score=51.41 Aligned_cols=171 Identities=16% Similarity=0.214 Sum_probs=121.0
Q ss_pred CCCeEEEEEeeCceEEE---------------Eecc-CceeEEE----EeCCEEEEEEecCCCceeeEEEEecCC-----
Q 015220 213 QDSIYKVFDLKNYTMLY---------------SISD-KNVQEIK----ISPGIMLLIFTKASGHVPLKILSIEDG----- 267 (411)
Q Consensus 213 ~ds~ykVWdL~~Ys~iy---------------sLs~-~~VqeIk----ISdG~~Lai~q~t~~~ipiKIl~I~tG----- 267 (411)
.|+.+.+++|.+..... .+.. ++++-++ ..++-+|++.... -|+||....+
T Consensus 54 sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk----~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 54 SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK----KILIYEWNDPRNSFS 129 (275)
T ss_pred cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC----EEEEEEEECCccccc
Confidence 35899999999877665 3332 3777777 2255666666655 6777777653
Q ss_pred cEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeecccc-----------CCCceEEEEeeceeEE
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF-----------MTPSAFIFLYENQLFL 336 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f-----------~hpsAfifLy~sqlFl 336 (411)
+.++++... .++..|+.+++++.+...++ ..++|+.+++...+....- .+|-+..-+..++.++
T Consensus 130 ~~~ke~~lp----~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll 204 (275)
T PF00780_consen 130 KLLKEISLP----DPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLL 204 (275)
T ss_pred ceeEEEEcC----CCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEE
Confidence 567775532 78888999999999998544 9999999999988754332 1345555556556666
Q ss_pred EEecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 337 TFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 337 Sfsd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+ |+.--+-|.+|++.+ ...+-|.. ....+.+ ....|+..+.+ +|.||++.||+++
T Consensus 205 ~~-~~~g~fv~~~G~~~r--~~~i~W~~--~p~~~~~--~~pyli~~~~~-----------~iEV~~~~~~~lv 260 (275)
T PF00780_consen 205 CY-DNIGVFVNKNGEPSR--KSTIQWSS--APQSVAY--SSPYLIAFSSN-----------SIEVRSLETGELV 260 (275)
T ss_pred Ee-cceEEEEcCCCCcCc--ccEEEcCC--chhEEEE--ECCEEEEECCC-----------EEEEEECcCCcEE
Confidence 65 556667788899888 88888966 3345555 34488877664 8999999999985
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.22 Score=51.01 Aligned_cols=261 Identities=11% Similarity=0.101 Sum_probs=153.7
Q ss_pred ccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC-----CCCcceee
Q 015220 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD-----AGFALFES 189 (411)
Q Consensus 115 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~-----~~~~LF~~ 189 (411)
|.-.++|..+++.+-.|-.+..- |-+ .++.+..|-+++.|.+----.-....+.+=|...+++- .+.|-|.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-
Confidence 77888898888888877765433 234 77777777776665332222223333333333333331 1233444
Q ss_pred cccCCCCeEEeeCCCCeEEEeecC-CCeEEEEEeeCceEEEEecc-CceeEE--------EEe-CCEEEEEEecCCCcee
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD-KNVQEI--------KIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~-ds~ykVWdL~~Ys~iysLs~-~~VqeI--------kIS-dG~~Lai~q~t~~~ip 258 (411)
...+|..+-+.+-.-..+++.-. +...-|.|+.+.+.+.+|.= ...+-+ .+| ||-++-+...+.+..
T Consensus 103 -~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~- 180 (352)
T TIGR02658 103 -VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP- 180 (352)
T ss_pred -ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce-
Confidence 56778888887655567767756 99999999999998877761 122222 223 454444333333331
Q ss_pred eEEEEecCCcEEeEeeecccc------CCcceeeeeecceeEEeecCceeeEEEccc-----ceEEEeecc----ccCCC
Q 015220 259 LKILSIEDGTVLKSFNHLLHR------NKKVDFIEQFNEKLLVKQENENLQILDVRN-----FELTEVSRT----EFMTP 323 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h------~K~I~FLE~~~ekllIKQe~~~LkI~dL~t-----~e~~~v~~T----~f~hp 323 (411)
...-...++. +.| .|...-+..+++-.| .++.+.|+.. .+.+.+-.. ..-.|
T Consensus 181 -----------~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 181 -----------KIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred -----------EEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence 1111111122 334 442223444466666 9999999544 444442100 01134
Q ss_pred ceE--EEEe--eceeEEEE----------ecCeEEEEecC-Cceeeeec-cccccCCCCccceEEEcCCCC-EEEEEecC
Q 015220 324 SAF--IFLY--ENQLFLTF----------RNRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKA 386 (411)
Q Consensus 324 sAf--ifLy--~sqlFlSf----------sd~tI~iWn~~-Gel~~s~e-~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d 386 (411)
... +.+. .+++|+.- ..++|.++|.. ++.++.+. ++.. -.|++|+||+ +++.-+-.
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~-------~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEI-------DSINVSQDAKPLLYALSTG 320 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCce-------eeEEECCCCCeEEEEeCCC
Confidence 442 3333 23777742 22689999999 99988765 6655 5899999999 88877633
Q ss_pred CCCCccccCCceEEEeeecceeee
Q 015220 387 DSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 387 ~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|+|.+.|..|||.+
T Consensus 321 ---------s~~VsViD~~t~k~i 335 (352)
T TIGR02658 321 ---------DKTLYIFDAETGKEL 335 (352)
T ss_pred ---------CCcEEEEECcCCeEE
Confidence 258999999999875
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0055 Score=63.98 Aligned_cols=185 Identities=15% Similarity=0.181 Sum_probs=129.9
Q ss_pred ecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceE----E---EEec--cCceeEEEEe---CCEEEEEEecCCCc
Q 015220 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----L---YSIS--DKNVQEIKIS---PGIMLLIFTKASGH 256 (411)
Q Consensus 189 ~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~----i---ysLs--~~~VqeIkIS---dG~~Lai~q~t~~~ 256 (411)
...|.|+=+.++ -|++.++|+++.+||++.|.. + ...+ ...|-+++.. ...|-.+.+ -
T Consensus 180 g~glsWn~~~~g------~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d----d 249 (422)
T KOG0264|consen 180 GYGLSWNRQQEG------TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD----D 249 (422)
T ss_pred ccccccccccce------eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC----C
Confidence 455777776554 477889999999999999885 1 2223 3377777776 333333322 2
Q ss_pred eeeEEEEec--CCcEEeEeeeccccCCcceeeeee--cceeEE-eecCceeeEEEccc-ceEEEeeccccCCCceEEEEe
Q 015220 257 VPLKILSIE--DGTVLKSFNHLLHRNKKVDFIEQF--NEKLLV-KQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLY 330 (411)
Q Consensus 257 ipiKIl~I~--tG~~L~t~~~LL~h~K~I~FLE~~--~ekllI-KQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy 330 (411)
-.+.|||+- +-++.++ --+|..+|..++.- +|.+|- .+.+..+.+||+|+ .++.- |.-+|..++..|-
T Consensus 250 ~~L~iwD~R~~~~~~~~~---~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHS---VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEGHEDEVFQVE 323 (422)
T ss_pred CeEEEEEcCCCCCCCccc---ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccCCCcceEEEE
Confidence 468999999 5555555 56899999999864 455533 23479999999998 33332 7778999999996
Q ss_pred ec----eeEEEE-ecCeEEEEecC--Cce-------------eeeeccccccCCCCccceEEEcCCCCE-EEEEecCCCC
Q 015220 331 EN----QLFLTF-RNRTVAVWNFR--GEL-------------VTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKADSD 389 (411)
Q Consensus 331 ~s----qlFlSf-sd~tI~iWn~~--Gel-------------~~s~e~H~~~~~~c~~n~i~Is~Dqd~-iiS~~~d~~~ 389 (411)
-+ .+|.|- .|+.+-|||+. |+- +=.=-||.. .++..--.|..-. |.|.+.|.
T Consensus 324 WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-----kV~DfsWnp~ePW~I~SvaeDN-- 396 (422)
T KOG0264|consen 324 WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-----KVSDFSWNPNEPWTIASVAEDN-- 396 (422)
T ss_pred eCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-----ccccccCCCCCCeEEEEecCCc--
Confidence 55 778877 99999999998 654 345668887 5666666676654 44555554
Q ss_pred CccccCCceEEEeee
Q 015220 390 DPLAEGNGKLFVSLL 404 (411)
Q Consensus 390 ~~~~~~~gtI~i~~i 404 (411)
+..||.-
T Consensus 397 --------~LqIW~~ 403 (422)
T KOG0264|consen 397 --------ILQIWQM 403 (422)
T ss_pred --------eEEEeec
Confidence 8888864
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.007 Score=62.83 Aligned_cols=193 Identities=12% Similarity=0.138 Sum_probs=136.3
Q ss_pred eeCCCCeEEEeecCCCeEEEEEee-----CceEEEEeccCceeEEEEeCCE--EEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLK-----NYTMLYSISDKNVQEIKISPGI--MLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~-----~Ys~iysLs~~~VqeIkISdG~--~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
.=..||.+++. -.++.+.||..+ ..+++--=++-.+..++-+|+. ++|. -+..+...+|||++++++.+.+
T Consensus 111 l~~~dg~Litc-~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~-GGke~~n~lkiwdle~~~qiw~ 188 (412)
T KOG3881|consen 111 LKLADGTLITC-VSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVAT-GGKENINELKIWDLEQSKQIWS 188 (412)
T ss_pred hhhcCCEEEEE-ecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEec-Cchhcccceeeeecccceeeee
Confidence 34567777764 678889999999 4555544456677777777333 2232 3445588999999999999988
Q ss_pred eee----ccccC-----CcceeeeeecceeE-EeecCceeeEEEcccceEEEeecccc-CCCceEEEEeec--eeEEEEe
Q 015220 273 FNH----LLHRN-----KKVDFIEQFNEKLL-VKQENENLQILDVRNFELTEVSRTEF-MTPSAFIFLYEN--QLFLTFR 339 (411)
Q Consensus 273 ~~~----LL~h~-----K~I~FLE~~~ekll-IKQe~~~LkI~dL~t~e~~~v~~T~f-~hpsAfifLy~s--qlFlSfs 339 (411)
.+- .|+-. -.+.|+|-.+-+.| =...-|-+++||-+++.+ -|.-.-| .+|=.++.|..+ .+|+.=.
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~fd~~E~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQFDFLENPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-ceeEeccccCcceeeeecCCCcEEEEecc
Confidence 761 12222 24567776655554 456899999999996544 3333333 345555555544 3444337
Q ss_pred cCeEEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+-+...|++ |-+.- .|.|--+ .+..|-.-|.+.+|.|++=|+ -+.|+|+.|-|++
T Consensus 268 ~g~l~~FD~r~~kl~g~~~kg~tG-----sirsih~hp~~~~las~GLDR----------yvRIhD~ktrkll 325 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLLGCGLKGITG-----SIRSIHCHPTHPVLASCGLDR----------YVRIHDIKTRKLL 325 (412)
T ss_pred cchhheecccCceeeccccCCccC-----CcceEEEcCCCceEEeeccce----------eEEEeecccchhh
Confidence 8889999999 66554 5888888 899999999999999999999 9999999997765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00065 Score=74.05 Aligned_cols=144 Identities=18% Similarity=0.329 Sum_probs=100.4
Q ss_pred ceeEEEEe-CCEEEEEEe-cCCCceeeEEE-EecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccce
Q 015220 235 NVQEIKIS-PGIMLLIFT-KASGHVPLKIL-SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q-~t~~~ipiKIl-~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e 311 (411)
....|-++ +|=.+++++ ..-.++|=-++ .|.+|+.+..+.- .|.+ .+.|-++-++..|+||-|-.+.
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~W-----dPFD-----~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHW-----DPFD-----DERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeeccc-----CCCC-----hHHeeecccCceEEEEEeccCC
Confidence 33445555 333345544 34456665554 5889998887431 2222 4567889999999999998876
Q ss_pred EEEeeccccCCCceEEEEeec------------eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCC
Q 015220 312 LTEVSRTEFMTPSAFIFLYEN------------QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (411)
Q Consensus 312 ~~~v~~T~f~hpsAfifLy~s------------qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq 377 (411)
.-++ -++|+..+-...- .++++- .|-||++||++ +.+..+|.+|.. -+=.++-||||
T Consensus 662 l~e~----~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-----qIf~~AWSpdG 732 (1012)
T KOG1445|consen 662 LPEN----EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-----QIFGIAWSPDG 732 (1012)
T ss_pred CCcc----cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-----ceeEEEECCCC
Confidence 6552 2344444433222 334444 88899999999 999999999999 89999999999
Q ss_pred CEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 378 DLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 378 d~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+.|.+-|||. +|.+++-.++
T Consensus 733 r~~AtVcKDg----------~~rVy~Prs~ 752 (1012)
T KOG1445|consen 733 RRIATVCKDG----------TLRVYEPRSR 752 (1012)
T ss_pred cceeeeecCc----------eEEEeCCCCC
Confidence 9999999996 7776665554
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0021 Score=65.63 Aligned_cols=179 Identities=17% Similarity=0.290 Sum_probs=130.6
Q ss_pred ccceehhhhccccceeeecccccEEEEEeCCCCce----EEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCC
Q 015220 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEV----IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (411)
Q Consensus 104 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~ev----IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk 179 (411)
.-|++++-++.-+-+.||..|-| ||+-.+|+.. |-++=||.
T Consensus 227 sGefllvgTdHp~~rlYdv~T~Q--cfvsanPd~qht~ai~~V~Ys~--------------------------------- 271 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQ--CFVSANPDDQHTGAITQVRYSS--------------------------------- 271 (430)
T ss_pred CCceEEEecCCCceeEEecccee--EeeecCcccccccceeEEEecC---------------------------------
Confidence 36899999999999999988887 9887777763 44444443
Q ss_pred CCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC----ceeEEEEe-CCEEEEEEecCC
Q 015220 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS-PGIMLLIFTKAS 254 (411)
Q Consensus 180 ~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~----~VqeIkIS-dG~~Lai~q~t~ 254 (411)
+|++-+-.+-|+++|+||=-.-.++.++..- +|-+...+ ||-+++.+-
T Consensus 272 ------------------------t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG--- 324 (430)
T KOG0640|consen 272 ------------------------TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG--- 324 (430)
T ss_pred ------------------------CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC---
Confidence 3444455566888999998888888888722 88888888 888876643
Q ss_pred CceeeEEEEecCCcEEeEeeecccc----CCcceeeeeecc---ee-EEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 255 GHVPLKILSIEDGTVLKSFNHLLHR----NKKVDFIEQFNE---KL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~LL~h----~K~I~FLE~~~e---kl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
.-+-+|+|-|.||..+++.. |- ..+.+.-++||. +. +....+..+--||-+|+++... ---+|-.|+
T Consensus 325 ~DS~vkLWEi~t~R~l~~Yt---GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a~ 399 (430)
T KOG0640|consen 325 KDSTVKLWEISTGRMLKEYT---GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGAV 399 (430)
T ss_pred CcceeeeeeecCCceEEEEe---cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCCc
Confidence 34668999999999999733 32 233444566664 43 5566788999999999998863 223566666
Q ss_pred EEEeec---eeEEEE-ecCeEEEEecC
Q 015220 327 IFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 327 ifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
-+.-.+ --|+|. -|..+|+|-.+
T Consensus 400 R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 400 RWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eEEEeCCCCCceeeecccceeeeeeec
Confidence 666655 679999 56699999754
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.023 Score=62.16 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=124.8
Q ss_pred EEEeecCCCeEEEEEeeC-ceEEEEec---cCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 207 VLTYSAQDSIYKVFDLKN-YTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~-Ys~iysLs---~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
.|+.+..++.+.+|++.+ |=+...|. +-.|..+.-++|.=|+...-.. .|.=||++|++.++. .-.-.-.
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg---~i~EwDl~~lk~~~~---~d~~gg~ 112 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG---SITEWDLHTLKQKYN---IDSNGGA 112 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCc---eEEEEecccCceeEE---ecCCCcc
Confidence 388888899999999998 33344554 3388888888777666554433 466799999999997 3344556
Q ss_pred ceeeeeecce--eEEeecCceeeEEEcccceEEEeeccccC-CCceEEEEeec-ee--EEEE-ecCeEEEEecC-Cceee
Q 015220 283 VDFIEQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFM-TPSAFIFLYEN-QL--FLTF-RNRTVAVWNFR-GELVT 354 (411)
Q Consensus 283 I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~-hpsAfifLy~s-ql--FlSf-sd~tI~iWn~~-Gel~~ 354 (411)
|=.|.+.++. +.|.-++.-|.+.+...++++- .+.|| ..+-+..|.-+ .. .++| .|+.|++||.. |.-+-
T Consensus 113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~--~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 113 IWSIAINPENTILAIGCDDGVLYDFSIGPDKITY--KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred eeEEEeCCccceEEeecCCceEEEEecCCceEEE--EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence 7777777654 5788788888888888887764 23443 34677778877 22 5778 88899999999 76333
Q ss_pred ---eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 ---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 ---s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-=-|.+.-...|-+=+|..=.|+ +|+||-. +|+|+.||-.+|.++
T Consensus 191 ~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS----------~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 191 IITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS----------AGTVTFWDSIFGTLI 238 (691)
T ss_pred EeeecccccccCCceEEEEEEEeecC-cEEEecC----------CceEEEEcccCcchh
Confidence 11222222122333333333554 5777643 479999999999864
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00054 Score=74.31 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=73.5
Q ss_pred eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEe----eceeEEEE-ecCeEEEEecCCceee-------eec-cc
Q 015220 293 LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY----ENQLFLTF-RNRTVAVWNFRGELVT-------SFE-DH 359 (411)
Q Consensus 293 llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy----~sqlFlSf-sd~tI~iWn~~Gel~~-------s~e-~H 359 (411)
|+=+++++.++.||+..++++-+. -.++|--.+=..+ ....|.|+ +|+.|.|||.+-..+- .+. .|
T Consensus 115 lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 115 LVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred EEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 345669999999999999999843 4777765554433 33779999 9999999999922211 111 12
Q ss_pred cc---------------cCCCCccce---EEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 360 LL---------------WHPDCNTNN---IYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 360 ~~---------------~~~~c~~n~---i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.. -++.=.+-. +-...|.++|+|+++.+ |+||+|||.+-++
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D---------~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD---------STIKVWDLRKNYT 252 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCC---------cceEEEeeccccc
Confidence 11 122222333 56677999999999854 5999999987665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0056 Score=56.39 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=83.4
Q ss_pred CCCeE--EEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 203 VNGKV--LTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 203 ~NGki--Lt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
|||.- ++++..+..+.+||++ .+.++++....+..|+.| +|.+|++..-.+..--|.+||..+.+.+.++.+
T Consensus 69 P~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---- 143 (194)
T PF08662_consen 69 PNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---- 143 (194)
T ss_pred cCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----
Confidence 45554 4555567899999997 889999988888999999 999999987665556799999999999998553
Q ss_pred CCcceeeeeecceeEEee--------cCceeeEEEcccceEEEe
Q 015220 280 NKKVDFIEQFNEKLLVKQ--------ENENLQILDVRNFELTEV 315 (411)
Q Consensus 280 ~K~I~FLE~~~ekllIKQ--------e~~~LkI~dL~t~e~~~v 315 (411)
..+--++=+|++.++.. .++.++||+..-....+.
T Consensus 144 -~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 144 -SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred -CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 23567888999886654 368899999975555553
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.015 Score=67.30 Aligned_cols=188 Identities=13% Similarity=0.148 Sum_probs=111.7
Q ss_pred CCeEEEeecCCCeEEEEEeeC-------ce--EEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecC--CcEEe
Q 015220 204 NGKVLTYSAQDSIYKVFDLKN-------YT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIED--GTVLK 271 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~-------Ys--~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t--G~~L~ 271 (411)
.+--+++++.||++||||++- |. +-|+.....|..+.++ +|.-+|++.... -|.++.|.- ++.+.
T Consensus 1060 ~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG---~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1060 HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG---SVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC---eEEEEEccccccccce
Confidence 444567888899999999974 22 4466666788888777 666666662222 233333332 22221
Q ss_pred EeeeccccCCcc-------eeeeeecc-eeEEeecCceeeEEEcccceEEEeeccccCCCc--eEEEEeec---eeEEEE
Q 015220 272 SFNHLLHRNKKV-------DFIEQFNE-KLLVKQENENLQILDVRNFELTEVSRTEFMTPS--AFIFLYEN---QLFLTF 338 (411)
Q Consensus 272 t~~~LL~h~K~I-------~FLE~~~e-kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps--AfifLy~s---qlFlSf 338 (411)
-...+.+-.++- .|.....+ .++..-....|-+||+++....- ++-..|+ ++..+.++ +-++.|
T Consensus 1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w---~lk~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW---RLKNQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH---hhhcCccccceeEEEecCCceEEEEe
Confidence 111000000000 02222223 45556678889999999855443 3333332 34444444 678888
Q ss_pred -ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCC---EEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 339 -RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD---LIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 339 -sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd---~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.|.+.+||+| +.++++-+- + ..|-++.+..-+.-. .+||++-. +++-+-+||++||-|
T Consensus 1214 ts~G~l~lWDLRF~~~i~sw~~--P--~~~~i~~v~~~~~~~~~S~~vs~~~~--------~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLRFRVPILSWEH--P--ARAPIRHVWLCPTYPQESVSVSAGSS--------SNNEVSTWNMETGLR 1277 (1431)
T ss_pred cCCceEEEEEeecCceeecccC--c--ccCCcceEEeeccCCCCceEEEeccc--------CCCceeeeecccCcc
Confidence 88999999999 999987541 1 126677777665543 45554432 467899999999976
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.035 Score=57.51 Aligned_cols=183 Identities=15% Similarity=0.211 Sum_probs=138.1
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcc
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I 283 (411)
..+++-+...=||+|...+....++...+ -|-|+=.|-.++.++.. ..+ ==+||++..-++.+=...+. .+|
T Consensus 17 ~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~-~qp-r~Lkv~~~Kk~~~ICe~~fp----t~I 90 (391)
T KOG2110|consen 17 STLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSI-KQP-RKLKVVHFKKKTTICEIFFP----TSI 90 (391)
T ss_pred eeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEec-CCC-ceEEEEEcccCceEEEEecC----Cce
Confidence 45666677778999999999887777655 56677777888777776 433 45899999988888775542 455
Q ss_pred eeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeece--eEEEE----ecCeEEEEecC-Cceeeee
Q 015220 284 DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ--LFLTF----RNRTVAVWNFR-GELVTSF 356 (411)
Q Consensus 284 ~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sq--lFlSf----sd~tI~iWn~~-Gel~~s~ 356 (411)
=.+-.-..-|++==|.. |-|||+.+=++..=-.|.=.+|....++..+. -|++. ..|.|.|||.. -.++.++
T Consensus 91 L~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred EEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 55555555554444444 99999999888772122224788888888774 47777 56789999999 8899999
Q ss_pred ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCce-EEEeeecceeee
Q 015220 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGK-LFVSLLMFVTCK 410 (411)
Q Consensus 357 e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gt-I~i~~i~tGk~~ 410 (411)
+-|.+ .+-.+++++||-+|.++|.- || |.++++.+|..+
T Consensus 170 ~aH~~-----~lAalafs~~G~llATASeK----------GTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 170 NAHKG-----PLAALAFSPDGTLLATASEK----------GTVIRVFSVPEGQKL 209 (391)
T ss_pred EecCC-----ceeEEEECCCCCEEEEeccC----------ceEEEEEEcCCccEe
Confidence 99999 99999999999999999865 35 689999998754
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0022 Score=64.13 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=54.7
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
++|.|- .|+-|||++-+ +.+++-|.-|.. -+|.++.|||-.++.++|+|. .|-+|++
T Consensus 264 KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----gvn~vAfspd~~lmAaaskD~----------rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----GVNAVAFSPDCELMAAASKDA----------RISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEeccCCchhhhhhhhc-----ceeEEEeCCCCchhhhccCCc----------eEEeeec
Confidence 789988 99999999999 999999999999 999999999999999999998 9999986
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.16 Score=50.73 Aligned_cols=280 Identities=14% Similarity=0.167 Sum_probs=184.0
Q ss_pred eccchHHHhhhcccceeeeccCC-CCcccccccc--cccccceEEEeeccceehhhhccccceeeecccccEEEEEeCCC
Q 015220 59 TMTDAQERFRNIRLQEEYDTHDP-KGHCSMVLPF--LRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTA 135 (411)
Q Consensus 59 ~~~~~~~~f~~~~l~~~fd~~d~-~~~~~~~l~~--l~~RS~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~ 135 (411)
+.-+-.+-||--+.. +.-|+ .+|-....|| |+||.|-- --|=.|.||++- ||+|.. .|+
T Consensus 48 avgsnskt~ric~yp---~l~~~r~~hea~~~pp~v~~kr~khh------------kgsiyc~~ws~~-geliat--gsn 109 (350)
T KOG0641|consen 48 AVGSNSKTFRICAYP---ALIDLRHAHEAAKQPPSVLCKRNKHH------------KGSIYCTAWSPC-GELIAT--GSN 109 (350)
T ss_pred EeccCCceEEEEccc---cccCcccccccccCCCeEEeeecccc------------CccEEEEEecCc-cCeEEe--cCC
Confidence 444445555542222 33344 2344444554 66776521 123378999865 886653 577
Q ss_pred CceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecC-C
Q 015220 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-D 214 (411)
Q Consensus 136 ~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~-d 214 (411)
|.-|+-+=||-.. |.++- . .=-..|-+..++.-.|.|=-+..|++|++.+. |
T Consensus 110 dk~ik~l~fn~dt------------------~~~~g-------~--dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 110 DKTIKVLPFNADT------------------CNATG-------H--DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred CceEEEEeccccc------------------ccccC-------c--ceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 7777666555422 22220 0 00123556677777888877788999988765 5
Q ss_pred CeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc----cCCcceeeee
Q 015220 215 SIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH----RNKKVDFIEQ 288 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~----h~K~I~FLE~ 288 (411)
-.+-+=|-...+.+.-++++ +|...--=+|-|++...+.+ -|+.|+|.---...+.---++ .+.-|-.+.+
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdk---tirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDK---TIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCc---eEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 55667788889999999988 66666544888888776654 478888875555444221111 1356778889
Q ss_pred ecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCceeeeec-----
Q 015220 289 FNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGELVTSFE----- 357 (411)
Q Consensus 289 ~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Gel~~s~e----- 357 (411)
-+.+.|+++ +++.--+||++-|..++ ....|++.+-++-.+ ..+||. -|.+|++=|++|+|...|.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence 999998875 78899999999999998 777888888888877 778899 7899999999999765442
Q ss_pred cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 358 ~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
.|.. ..=.+---|+.=-.||-|+|+ |..+|-+
T Consensus 317 ehkd-----k~i~~rwh~~d~sfisssadk----------t~tlwa~ 348 (350)
T KOG0641|consen 317 EHKD-----KAIQCRWHPQDFSFISSSADK----------TATLWAL 348 (350)
T ss_pred eccC-----ceEEEEecCccceeeeccCcc----------eEEEecc
Confidence 3433 122222334444578899999 8888854
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.015 Score=58.11 Aligned_cols=185 Identities=14% Similarity=0.068 Sum_probs=118.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCce----------EEEEe--ccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCC-cE
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYT----------MLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TV 269 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys----------~iysL--s~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG-~~ 269 (411)
+-+++|+....++++-|+.|+.-- .++.- .|-.|-.++.-|.++|- +....++-=.|+=+-. .-
T Consensus 20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls---~gdG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLS---GGDGLVYGWEWNEEEESLA 96 (325)
T ss_pred CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheee---ccCceEEEeeehhhhhhcc
Confidence 457778888889999998887511 11111 11133344444444322 1224455445543322 11
Q ss_pred EeEeeeccccCC----------cceeeee--ecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----e
Q 015220 270 LKSFNHLLHRNK----------KVDFIEQ--FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----Q 333 (411)
Q Consensus 270 L~t~~~LL~h~K----------~I~FLE~--~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----q 333 (411)
++. |+..+- +|+.|-+ ...-++.+-++.-|-.|||.+|++.. ++-+|..-+++|.-. |
T Consensus 97 ~K~---lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r---~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 97 TKR---LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR---EYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred chh---hhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---EEcCCcceeeeeeecccCcc
Confidence 222 333333 3444443 34456888899999999999999998 999999999999974 5
Q ss_pred eEEEEecCeEEEEecC-CceeeeeccccccCCCCcc-----ceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 334 LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNT-----NNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 334 lFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~-----n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+|--..|+|+||||++ +.-+..+|-.. +|+|-- =.-++--|.|.++||--. ..-+|++.+-
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk--~~~~lRp~~g~wigala~~edWlvCGgGp-----------~lslwhLrss 237 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYK--NPNLLRPDWGKWIGALAVNEDWLVCGGGP-----------KLSLWHLRSS 237 (325)
T ss_pred eeecCCCccEEEEeccccceeEEecccc--ChhhcCcccCceeEEEeccCceEEecCCC-----------ceeEEeccCC
Confidence 5544499999999999 77777776433 355543 124666788899999877 4788988776
Q ss_pred ee
Q 015220 408 TC 409 (411)
Q Consensus 408 k~ 409 (411)
+|
T Consensus 238 e~ 239 (325)
T KOG0649|consen 238 ES 239 (325)
T ss_pred Cc
Confidence 65
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00087 Score=75.92 Aligned_cols=191 Identities=14% Similarity=0.212 Sum_probs=130.2
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc----CceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~----~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
+||..--|..|++++.++.+-||||++-+.=++..+ ++|.-++- +..+=-|..-.+..-..-||||.--+.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW-NrkvqhILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW-NRKVSHILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc-chhhhHHhhccCCCCCceeccccCCCccccc
Confidence 699999999999999999999999999665555522 24443332 3333233334455567889999988777765
Q ss_pred eeccccCCcceeeeeecce---eEEeecCc---eeeEEEcccce-EEEeeccccCCCceEEEEeec----eeEEEE-ecC
Q 015220 274 NHLLHRNKKVDFIEQFNEK---LLVKQENE---NLQILDVRNFE-LTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNR 341 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ek---llIKQe~~---~LkI~dL~t~e-~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~ 341 (411)
.. .+..-.+..|+=+++. +++++++. .|++||||.-. +.+ ++-.|-..++.+.-. .++||= +|+
T Consensus 201 s~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k---~~~~H~~GilslsWc~~D~~lllSsgkD~ 276 (1049)
T KOG0307|consen 201 SD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK---ILEGHQRGILSLSWCPQDPRLLLSSGKDN 276 (1049)
T ss_pred cc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh---hhcccccceeeeccCCCCchhhhcccCCC
Confidence 53 2333556788888875 47777654 58999998843 333 566899999998865 666665 999
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.|-.||.+ ||.|-.|--.-.| +.+.=+-=++=.++.+.| -.|+|-|+.|.++
T Consensus 277 ~ii~wN~~tgEvl~~~p~~~nW----~fdv~w~pr~P~~~A~as----------fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 277 RIICWNPNTGEVLGELPAQGNW----CFDVQWCPRNPSVMAAAS----------FDGKISIYSLQGT 329 (1049)
T ss_pred CeeEecCCCceEeeecCCCCcc----eeeeeecCCCcchhhhhe----------eccceeeeeeecC
Confidence 99999999 9999988876666 222111112222222222 2368888888765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0046 Score=67.80 Aligned_cols=203 Identities=10% Similarity=0.127 Sum_probs=131.4
Q ss_pred eeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEee-Cce-EEEEeccCceeEEEE
Q 015220 164 SLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYT-MLYSISDKNVQEIKI 241 (411)
Q Consensus 164 ~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~-~Ys-~iysLs~~~VqeIkI 241 (411)
.|+.+..++++++.=+. ++ .|. .+++++.|+.++.|-|+ .|- .+|+|.++.+--+-+
T Consensus 49 ~l~GH~a~VnC~~~l~~--------s~---~~a----------~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv 107 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPT--------SE---IVA----------EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV 107 (764)
T ss_pred eccCCccceEEEEEccc--------cc---ccc----------eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE
Confidence 47778888888877332 22 122 57889999999999999 333 789999877777777
Q ss_pred eCCEEEEEEecCCCceeeEEEEecCCc--EEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccce--EEEeec
Q 015220 242 SPGIMLLIFTKASGHVPLKILSIEDGT--VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE--LTEVSR 317 (411)
Q Consensus 242 SdG~~Lai~q~t~~~ipiKIl~I~tG~--~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e--~~~v~~ 317 (411)
.++..++... ...--+.+|+.++.+ ++..+.+--+-=-|.-+-++-+.+.++-.-|....+.++-..+ .+..-+
T Consensus 108 ~a~~~~~~~~--~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 108 VARSSVMTCK--AADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred EeeeeEEEee--ccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 7777776663 444456789998777 4444332211111222223334444433333333444444433 233334
Q ss_pred cccCCCceEEEEeec-----ee-EEEE-ecCeEEEEecC-Ccee-------------------------------eeecc
Q 015220 318 TEFMTPSAFIFLYEN-----QL-FLTF-RNRTVAVWNFR-GELV-------------------------------TSFED 358 (411)
Q Consensus 318 T~f~hpsAfifLy~s-----ql-FlSf-sd~tI~iWn~~-Gel~-------------------------------~s~e~ 358 (411)
.+-+|-.|+.-|+.+ .+ +.|. +|+.||||.+. ++.. +=+-|
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 677888888877754 34 5566 99999999998 4411 11228
Q ss_pred ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 359 H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
|..| ++++-=+|++.-|.|.|+|+ |+-||--
T Consensus 266 HeDW-----V~sv~W~p~~~~LLSASaDk----------smiiW~p 296 (764)
T KOG1063|consen 266 HEDW-----VYSVWWHPEGLDLLSASADK----------SMIIWKP 296 (764)
T ss_pred cccc-----eEEEEEccchhhheecccCc----------ceEEEec
Confidence 8885 89999999999999999999 7777753
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.012 Score=67.49 Aligned_cols=188 Identities=10% Similarity=0.131 Sum_probs=118.4
Q ss_pred CCCCeEEEeecCCCeEEEEEe-eC----ceEE---EEeccCc----eeEEEEe----CCEEEEEEecCCCceeeEEEEec
Q 015220 202 DVNGKVLTYSAQDSIYKVFDL-KN----YTML---YSISDKN----VQEIKIS----PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL-~~----Ys~i---ysLs~~~----VqeIkIS----dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
+-+---|..+..|+++|||+= .+ .+++ ..|++.- =.-+-+. .|+++..+ ..--|.|||.+
T Consensus 1120 e~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG----d~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1120 EQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG----DVRSIRIWDAH 1195 (1387)
T ss_pred ccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC----CeeEEEEEecc
Confidence 334455666778999999952 22 2222 4444330 0002222 45544333 36679999999
Q ss_pred CCcEEeEeeeccccCCcceee--eeecceeEEee-cCceeeEEEcccceEEEeeccccCCCce--EEEEeec----eeEE
Q 015220 266 DGTVLKSFNHLLHRNKKVDFI--EQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSA--FIFLYEN----QLFL 336 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FL--E~~~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsA--fifLy~s----qlFl 336 (411)
..++.++.- .+.+.=|-.| -+.+++++++- .+..+++||.+.-.+-..-.+.-.|... ++-|--+ .-++
T Consensus 1196 ~E~~~~diP--~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1196 KEQVVADIP--YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred cceeEeecc--cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee
Confidence 999998632 2333333322 13335665555 8999999999986653322233334444 5555544 2367
Q ss_pred EE-ecCeEEEEecCC-ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 337 TF-RNRTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 337 Sf-sd~tI~iWn~~G-el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
|+ .||.|++||+|+ ...+.+..-.-|.-.-....+.+-++-++|.||+. . .|+|||+.-
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q----------~ikIy~~~G 1334 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q----------LIKIYSLSG 1334 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c----------eEEEEecCh
Confidence 77 999999999998 55555555554433335778999999999999999 6 899999753
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.005 Score=65.97 Aligned_cols=161 Identities=11% Similarity=0.098 Sum_probs=107.2
Q ss_pred CeEEEeecCCCeEEEEEeeCce------EEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 205 GKVLTYSAQDSIYKVFDLKNYT------MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~Ys------~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
+--+++...|+-+||||-.+-+ ++.++++- +..+... =.-...|+|..+++--+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t---------~~~~~w~-L~~~~s~~k~~~~~~~~---------- 64 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGT---------CTYTKWG-LSADYSPMKWLSLEKAK---------- 64 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCc---------ceeEEEE-EEeccchHHHHhHHHHh----------
Confidence 3456778889999999987744 34444422 2222111 11233455554444211
Q ss_pred cCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cc
Q 015220 279 RNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Ge 351 (411)
-..++..+| --.+..+.+|++..||+..- .+-..|+.-+.+.--+ ..|-|. -|..+..|+++ +-
T Consensus 65 --------~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 65 --------KASLDTSMLVLGTPQGSVLLYSVAGGEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred --------hccCCceEEEeecCCccEEEEEecCCeEEEE-EecCCCCCcceeeecccccCceEecCCceeEEEEecccce
Confidence 112222222 22567899999999998872 2334688888876633 235555 89999999999 88
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeeeC
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCKI 411 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~~ 411 (411)
+.|-+..... ..-++-|||||.++.++|. +|++|||+|+|.++
T Consensus 136 ~~~~~~~~~~-----~~~sl~is~D~~~l~~as~------------~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 136 IIRIWKEQKP-----LVSSLCISPDGKILLTASR------------QIKVLDIETKEVVI 178 (541)
T ss_pred eeeeeccCCC-----ccceEEEcCCCCEEEeccc------------eEEEEEccCceEEE
Confidence 8887766666 8999999999999988764 79999999999874
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=64.47 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=99.0
Q ss_pred eEEEEecCCcE--EeEeeeccccCCcceeeeeeccee-EEee--cCceeeEEEcccceEEEeeccccCC-CceEEEEeec
Q 015220 259 LKILSIEDGTV--LKSFNHLLHRNKKVDFIEQFNEKL-LVKQ--ENENLQILDVRNFELTEVSRTEFMT-PSAFIFLYEN 332 (411)
Q Consensus 259 iKIl~I~tG~~--L~t~~~LL~h~K~I~FLE~~~ekl-lIKQ--e~~~LkI~dL~t~e~~~v~~T~f~h-psAfifLy~s 332 (411)
-.||+|++|.. ++| .|..|-|||+=|+-..+.. ++++ ++...++.||++-|---+ .-+... ..+.+=|.-+
T Consensus 175 CTiWdie~~~~~~vkT--QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKT--QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYEDPSPSTPLLRLSWN 251 (364)
T ss_pred EEEEEEeeccccceee--EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-EecCCCCCCcceeeccC
Confidence 47999999966 444 7899999999888777555 7777 888999999998432110 012222 2345556655
Q ss_pred ----eeEEEE--ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 333 ----QLFLTF--RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 333 ----qlFlSf--sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
.+..|| -+++|-|-|.| +.++.+|.+|.+ .+|.|+--|.-.--|+-|-|+ .-.-||||
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-----~VNgIaWaPhS~~hictaGDD---------~qaliWDl 317 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-----SVNGIAWAPHSSSHICTAGDD---------CQALIWDL 317 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-----cccceEecCCCCceeeecCCc---------ceEEEEec
Confidence 567888 66799999999 889999999999 899999999988888777776 36778887
Q ss_pred cc
Q 015220 405 MF 406 (411)
Q Consensus 405 ~t 406 (411)
-+
T Consensus 318 ~q 319 (364)
T KOG0290|consen 318 QQ 319 (364)
T ss_pred cc
Confidence 53
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.031 Score=56.86 Aligned_cols=245 Identities=13% Similarity=0.110 Sum_probs=165.0
Q ss_pred EEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC--CCCCcceeecccCCCCeEEeeCCCC
Q 015220 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP--DAGFALFESESLKWPGFVEFDDVNG 205 (411)
Q Consensus 128 ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~--~~~~~LF~~~~l~~PgfvEFDd~NG 205 (411)
.-+++..|+.-|-.|=+...-+-++.+| |=+ +..+|.-+.-.-.-.+|- +-..|+++.. +-| +|
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~---SWD-~tVR~wevq~~g~~~~ka~~~~~~PvL~v~---------Wsd-dg 84 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAG---SWD-GTVRIWEVQNSGQLVPKAQQSHDGPVLDVC---------WSD-DG 84 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEec---ccC-CceEEEEEecCCcccchhhhccCCCeEEEE---------Ecc-CC
Confidence 3467777888888888888666666544 333 455665543321122221 2334555432 222 34
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEE---EEEEecCCCceeeEEEEecCCcEEeEeeeccccCC
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIM---LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~---Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K 281 (411)
--+...+.|+..|+|||.+.+....=.|+ -|..++.=+|+. ||+..=-+ -||-||.-.-+++++..+. -
T Consensus 85 skVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK---TlKfWD~R~~~pv~t~~LP----e 157 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK---TLKFWDTRSSNPVATLQLP----E 157 (347)
T ss_pred ceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccccc---ceeecccCCCCeeeeeecc----c
Confidence 44555677999999999999655444443 888888775553 45554433 4899999999999985532 5
Q ss_pred cceeeeeecceeEEeecCceeeEEEcccceEEE---eeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-Cceee--
Q 015220 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTE---VSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVT-- 354 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~---v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~-- 354 (411)
+++.+.+..+=+.++-.+..|.+|||+++.... .++-.| .-..+-+.-..+.|+-+ -+|.+.|-+.+ |.+..
T Consensus 158 RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~-Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 158 RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKW-QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccc-eeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 789999999999999999999999998854332 233233 33344444455777777 89999999999 76654
Q ss_pred eeccccccCC----CCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 355 SFEDHLLWHP----DCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 355 s~e~H~~~~~----~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+|.=|..-.+ -=.+|.|+.-|.-.+|+....| |++..||-
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD----------Gtf~FWDk 280 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD----------GTFSFWDK 280 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCC----------ceEEEecc
Confidence 6667774211 2257899999999999988777 49999984
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0018 Score=73.47 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=113.9
Q ss_pred EEEeecCCCeEEEEEeeCc---e---EEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 207 VLTYSAQDSIYKVFDLKNY---T---MLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Y---s---~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
+++-+.+|+.+.+||-..- . .|-+.++| .|..+.+. -|.+||.+.. -.-|-||||..=+.-.+.. -
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~---~geI~iWDlnn~~tP~~~~-~ 157 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD---DGEILIWDLNKPETPFTPG-S 157 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC---CCcEEEeccCCcCCCCCCC-C
Confidence 4666788999999987663 1 33444444 67777666 4555555443 3457799998733333311 0
Q ss_pred cccCCcceeeeeecce-eEEeecCc--eeeEEEcccceEEEeeccccCCCce--EEEEe-----eceeEEEE-ecC--eE
Q 015220 277 LHRNKKVDFIEQFNEK-LLVKQENE--NLQILDVRNFELTEVSRTEFMTPSA--FIFLY-----ENQLFLTF-RNR--TV 343 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek-llIKQe~~--~LkI~dL~t~e~~~v~~T~f~hpsA--fifLy-----~sqlFlSf-sd~--tI 343 (411)
.....+|-+|.=-..- +++++.+. +..||||+..+.+. ..-.|+.. ...|. -+|+.+.- .|+ .|
T Consensus 158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii---~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII---KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc---ccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 1122333333322222 36676554 69999999986654 22223332 22233 23665555 443 89
Q ss_pred EEEecC--CceeeeeccccccCCCCccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 344 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 344 ~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+||+| -.+++.|++|.- -+=.+--.+ |-++++|..||. .|-+||..|||.+
T Consensus 235 qlWDlR~assP~k~~~~H~~-----GilslsWc~~D~~lllSsgkD~----------~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 235 QLWDLRFASSPLKILEGHQR-----GILSLSWCPQDPRLLLSSGKDN----------RIICWNPNTGEVL 289 (1049)
T ss_pred EeecccccCCchhhhccccc-----ceeeeccCCCCchhhhcccCCC----------CeeEecCCCceEe
Confidence 999999 669999999987 444444444 448999999998 9999999999975
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.015 Score=60.40 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=130.4
Q ss_pred eCCCCeEEEeecCCCeEEEEEeeCceEEEEe--------ccCceeEEEEeCCEEEEEEecCCCceeeEEEEecC-----C
Q 015220 201 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED-----G 267 (411)
Q Consensus 201 Dd~NGkiLt~~~~ds~ykVWdL~~Ys~iysL--------s~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~t-----G 267 (411)
+|.+..+|..+..+-.+..++.......-++ ...-|...+..||-+++- -+.-.+-+|+++. .
T Consensus 65 ~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc----~~sG~l~~~~~k~~d~hss 140 (412)
T KOG3881|consen 65 VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITC----VSSGNLQVRHDKSGDLHSS 140 (412)
T ss_pred cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEE----ecCCcEEEEeccCCccccc
Confidence 8899999999978888888887776655443 233566666777765433 2334577888883 3
Q ss_pred cEEeEeeeccccCCcceeeeeeccee-EEeecCce----eeEEEcccceEEE----eeccccC--CC---ceEEEEee--
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENEN----LQILDVRNFELTE----VSRTEFM--TP---SAFIFLYE-- 331 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~----LkI~dL~t~e~~~----v~~T~f~--hp---sAfifLy~-- 331 (411)
++++-.. --++.-|++....= +++-+|.. |+|||+..++.+- ||+-.-+ -| .+..||--
T Consensus 141 ~l~~la~-----g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~ 215 (412)
T KOG3881|consen 141 KLIKLAT-----GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP 215 (412)
T ss_pred cceeeec-----CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCC
Confidence 3443322 25677788887655 67766654 9999999975443 4332211 22 34456666
Q ss_pred ceeEEEE-ecCeEEEEecC-Cc-eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 332 NQLFLTF-RNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 332 sqlFlSf-sd~tI~iWn~~-Ge-l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+.-|+|. +..-+|+||.+ |- ||.+|.=-.. .+..+..+|+|.+|+.|-+-. .+..+|+.+||
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~-----~is~~~l~p~gn~Iy~gn~~g----------~l~~FD~r~~k 280 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN-----PISSTGLTPSGNFIYTGNTKG----------QLAKFDLRGGK 280 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccC-----cceeeeecCCCcEEEEecccc----------hhheecccCce
Confidence 6889999 99999999999 54 7777665544 678899999999999887665 89999999999
Q ss_pred ee
Q 015220 409 CK 410 (411)
Q Consensus 409 ~~ 410 (411)
++
T Consensus 281 l~ 282 (412)
T KOG3881|consen 281 LL 282 (412)
T ss_pred ee
Confidence 75
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.5 Score=46.74 Aligned_cols=209 Identities=13% Similarity=0.197 Sum_probs=134.2
Q ss_pred cccCCCCeEEeeCCCCeEEEeec---CCCeEEEEEeeCc----eEEEEec--cCceeEEEEe-CCEEEEEEecCCCceee
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSA---QDSIYKVFDLKNY----TMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPL 259 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~---~ds~ykVWdL~~Y----s~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipi 259 (411)
.....|.|+++|..+...-+... +++.+-.|.+.+= +.+-+.. ...-.-+.++ +|-+|++..-..+. +
T Consensus 34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~--v 111 (345)
T PF10282_consen 34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGS--V 111 (345)
T ss_dssp EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTE--E
T ss_pred cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCe--E
Confidence 35678999999887777766666 4778888888874 3444443 4566778888 99999998877665 6
Q ss_pred EEEEecC-CcEEeEeeecc----c------cCCcceeeeeecce--eEEee-cCceeeEEEcccce--EEE---eecccc
Q 015220 260 KILSIED-GTVLKSFNHLL----H------RNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRNFE--LTE---VSRTEF 320 (411)
Q Consensus 260 KIl~I~t-G~~L~t~~~LL----~------h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t~e--~~~---v~~T~f 320 (411)
.+++|.+ |++........ + .......+...+++ +++.. +...|.+|++.... +.. +.-...
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 8899986 66666432111 1 12334577888874 34433 78899999998765 433 233444
Q ss_pred CCCceEEEEeec-eeEEEE-ecCeEEEEecC---Ccee--eeeccc-cccCCCCccceEEEcCCCCEEEEEecCCCCCcc
Q 015220 321 MTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR---GELV--TSFEDH-LLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (411)
Q Consensus 321 ~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~---Gel~--~s~e~H-~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~ 392 (411)
..|..+.|-... .+|++- .+++|.++++. |.+. .+..-. ..+...-....|.|||||++|......
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------ 265 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------ 265 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------
Confidence 567777776554 566776 88999999998 3221 111111 123344467789999999988765544
Q ss_pred ccCCceEEEeee--cceee
Q 015220 393 AEGNGKLFVSLL--MFVTC 409 (411)
Q Consensus 393 ~~~~gtI~i~~i--~tGk~ 409 (411)
..+|-++++ .+|++
T Consensus 266 ---~~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 266 ---SNSISVFDLDPATGTL 281 (345)
T ss_dssp ---TTEEEEEEECTTTTTE
T ss_pred ---CCEEEEEEEecCCCce
Confidence 248889988 55654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.035 Score=55.52 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=105.5
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
.|...+-++++. .|+++--|||++.+.-.++.++ -|..+... +|++|- . . .---++|||..|++....+
T Consensus 122 ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qils-G-~--EDGtvRvWd~kt~k~v~~i-- 194 (325)
T KOG0649|consen 122 LDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILS-G-A--EDGTVRVWDTKTQKHVSMI-- 194 (325)
T ss_pred eccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceee-c-C--CCccEEEEeccccceeEEe--
Confidence 455556666665 7999999999999999999977 56776662 666532 1 1 1234799999999999973
Q ss_pred ccccCCcceeeeeecce----------eEEeecCceeeEEEcccceEEEeeccccCCCceEEEE--eeceeEEEEecCeE
Q 015220 276 LLHRNKKVDFIEQFNEK----------LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL--YENQLFLTFRNRTV 343 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ek----------llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL--y~sqlFlSfsd~tI 343 (411)
+..|.-+.+-.++++ -|+--+|.+|-+|+|++.|+++ .|.-|.-+.-+ +..+++..+.-+-+
T Consensus 195 --e~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~----vfpipa~v~~v~F~~d~vl~~G~g~~v 268 (325)
T KOG0649|consen 195 --EPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTC----VFPIPARVHLVDFVDDCVLIGGEGNHV 268 (325)
T ss_pred --ccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceE----EEecccceeEeeeecceEEEeccccce
Confidence 444444444444333 3566688999999999999996 35555555544 45566777789999
Q ss_pred EEEecCCceeee--ecccc
Q 015220 344 AVWNFRGELVTS--FEDHL 360 (411)
Q Consensus 344 ~iWn~~Gel~~s--~e~H~ 360 (411)
.=|.+.|+|-.. ++.|.
T Consensus 269 ~~~~l~Gvl~a~ip~~s~~ 287 (325)
T KOG0649|consen 269 QSYTLNGVLQANIPVESTA 287 (325)
T ss_pred eeeeeccEEEEeccCCccc
Confidence 999999998873 44443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.4 Score=47.91 Aligned_cols=212 Identities=17% Similarity=0.240 Sum_probs=117.4
Q ss_pred eccceehhhhccccceeeecccccEEEEEeCCCCce-EE---E-EEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhh
Q 015220 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADEV-IR---S-LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (411)
Q Consensus 103 ~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~ev-Ir---s-ifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~ 177 (411)
..++.|++-+..|.-.|||..||+.+-..+...... ++ | +.. ++.+++.+ .+ ..+.| +. +..
T Consensus 158 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~~~---~~--g~v~a--~d---~~~ 224 (394)
T PRK11138 158 VSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIVGG---DN--GRVSA--VL---MEQ 224 (394)
T ss_pred EECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CCEEEEEc---CC--CEEEE--EE---ccC
Confidence 346778888888888999999999888776532111 00 0 111 23333321 11 12222 21 122
Q ss_pred CCCCCCCcceeecc---------------cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe
Q 015220 178 GKPDAGFALFESES---------------LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242 (411)
Q Consensus 178 gk~~~~~~LF~~~~---------------l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS 242 (411)
|+. +.+... -..|-.. +|.+.+ ...++.+.-.|+++.+.+-+-.-.....+.+.
T Consensus 225 G~~-----~W~~~~~~~~~~~~~~~~~~~~~sP~v~-----~~~vy~-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 293 (394)
T PRK11138 225 GQL-----IWQQRISQPTGATEIDRLVDVDTTPVVV-----GGVVYA-LAYNGNLVALDLRSGQIVWKREYGSVNDFAVD 293 (394)
T ss_pred Chh-----hheeccccCCCccchhcccccCCCcEEE-----CCEEEE-EEcCCeEEEEECCCCCEEEeecCCCccCcEEE
Confidence 221 222111 1223211 344444 33467777778888777654332233345566
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCC
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMT 322 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~h 322 (411)
+|.+.+... .-.+..++++||+.+.+...+.+. ...-..+.++++++..++..|-++|..+|+..---+. .
T Consensus 294 ~~~vy~~~~----~g~l~ald~~tG~~~W~~~~~~~~--~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~---~ 364 (394)
T PRK11138 294 GGRIYLVDQ----NDRVYALDTRGGVELWSQSDLLHR--LLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKV---D 364 (394)
T ss_pred CCEEEEEcC----CCeEEEEECCCCcEEEcccccCCC--cccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc---C
Confidence 776665542 235888899999999875533222 2233346789999999999999999999997651111 1
Q ss_pred CceEE---EEeeceeEEEEecCeEEEEe
Q 015220 323 PSAFI---FLYENQLFLTFRNRTVAVWN 347 (411)
Q Consensus 323 psAfi---fLy~sqlFlSfsd~tI~iWn 347 (411)
...+. .+....+|+.-.|+++-..+
T Consensus 365 ~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 365 SSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 11111 13455777777777665543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.046 Score=58.78 Aligned_cols=234 Identities=13% Similarity=0.167 Sum_probs=140.6
Q ss_pred EEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhh-hhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeE
Q 015220 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (411)
Q Consensus 139 IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i-~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~y 217 (411)
|-|+=.|++|. |.+.|. +.|.--.++|+--+...+ +-|| +.|..-|+--- ..-..-+++.++.+|.
T Consensus 37 ~~s~~w~~~n~-lvvas~-~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~----------~s~S~y~~sgG~~~~V 103 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASM-AGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVAC----------ASQSLYEISGGQSGCV 103 (673)
T ss_pred ceeeeccccce-EEEeec-CCceeEEEecccCCCCccceeec-cccchHHHHhh----------hhcceeeeccCcCcee
Confidence 78888999888 666553 445555666654443333 1122 12222222111 1112678999999999
Q ss_pred EEEEeeCceEEEEeccCc--eeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee
Q 015220 218 KVFDLKNYTMLYSISDKN--VQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL 293 (411)
Q Consensus 218 kVWdL~~Ys~iysLs~~~--VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl 293 (411)
|+|||+.--.+..|.|++ |.-|..- |..+..++..- -|.|.++.|++..-+|.+- ...-|.-+.-++.+-
T Consensus 104 kiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG----diiih~~~t~~~tt~f~~~--sgqsvRll~ys~skr 177 (673)
T KOG4378|consen 104 KIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG----DIIIHGTKTKQKTTTFTID--SGQSVRLLRYSPSKR 177 (673)
T ss_pred eehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC----cEEEEecccCccccceecC--CCCeEEEeecccccc
Confidence 999999544556666653 2222211 22222222221 2456777787777776653 233344555555553
Q ss_pred ---EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCCc-eeeeeccccccCCCC
Q 015220 294 ---LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRGE-LVTSFEDHLLWHPDC 366 (411)
Q Consensus 294 ---lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~Ge-l~~s~e~H~~~~~~c 366 (411)
-+++.+.-.-+||+....++-=-...--.|.+=||.-.+ .||+|. -|.+|-+||.+.. .+.++.-. ||
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~P-- 252 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HP-- 252 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec---CC--
Confidence 578899999999999876664111222245555666555 678888 9999999999833 22233211 22
Q ss_pred ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
..+|+.+++|-+|+-|..- |.|--+|+..-
T Consensus 253 -lstvaf~~~G~~L~aG~s~----------G~~i~YD~R~~ 282 (673)
T KOG4378|consen 253 -LSTVAFSECGTYLCAGNSK----------GELIAYDMRST 282 (673)
T ss_pred -cceeeecCCceEEEeecCC----------ceEEEEecccC
Confidence 3689999999999887654 57888887643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.017 Score=58.68 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=68.9
Q ss_pred EEeecCceeeEEEcccceEEEeeccccCCCceEEE-Eeec----eeEEEEecCeEEEEecC-CceeeeeccccccCCCCc
Q 015220 294 LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF-LYEN----QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (411)
Q Consensus 294 lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif-Ly~s----qlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~ 367 (411)
.+-++++.+.++|..+.+....=+|. .+.+. ++.+ .+|++-+|++|.+||+. ++++++..--. +
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~------~ 79 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTG----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG------N 79 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-S----TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS------E
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCC----CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC------C
Confidence 35778999999999999887632232 22232 3333 57887799999999999 99999874422 4
Q ss_pred cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 368 TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 368 ~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-..+++|+||+.++.+|-.. |++.|+|.+|.|.+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~---------~~v~v~D~~tle~v 113 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEP---------GTVSVIDAETLEPV 113 (369)
T ss_dssp EEEEEE--TTTEEEEEEEET---------TEEEEEETTT--EE
T ss_pred cceEEEcCCCCEEEEEecCC---------CceeEeccccccce
Confidence 67899999999999887654 49999999998764
|
... |
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0048 Score=66.23 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=79.0
Q ss_pred Ccceeeeeecc--eeEEeecCceeeEEEccc--------ceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEE
Q 015220 281 KKVDFIEQFNE--KLLVKQENENLQILDVRN--------FELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVW 346 (411)
Q Consensus 281 K~I~FLE~~~e--kllIKQe~~~LkI~dL~t--------~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iW 346 (411)
.=|+.+++++. -++-++|++.|++|||++ =|++- |.-+|.--++||... +--+|+ -|++|+.|
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~---tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPIL---TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeE---EEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 33444444443 357789999999999943 23444 788899999998866 445555 99999999
Q ss_pred ecC--Cc---------eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 347 NFR--GE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 347 n~~--Ge---------l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|+- ++ |..+|.||-. .+--++.|+.-|.|.|||.|- |+.+|+...+
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtd-----avw~l~~s~~~~~Llscs~Dg----------Tvr~w~~~~~ 428 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTD-----AVWLLALSSTKDRLLSCSSDG----------TVRLWEPTEE 428 (577)
T ss_pred ccCCCCCcccccCcchhccceecccc-----ceeeeeecccccceeeecCCc----------eEEeeccCCc
Confidence 654 22 3345566655 456789999999999999996 9999987644
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.045 Score=62.93 Aligned_cols=201 Identities=15% Similarity=0.195 Sum_probs=132.8
Q ss_pred ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-----cCceeEEEEeCC---EEEEEEecCCCce
Q 015220 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKNVQEIKISPG---IMLLIFTKASGHV 257 (411)
Q Consensus 186 LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-----~~~VqeIkISdG---~~Lai~q~t~~~i 257 (411)
-|.+....-|--+-|-.-.--+.+ ..+...++|||.+..+.+-.-+ +..|+++.+=++ -||++.... -
T Consensus 1058 ~~~~~n~~~pk~~~~hpf~p~i~~-ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d---G 1133 (1387)
T KOG1517|consen 1058 KFMTGNNQPPKTLKFHPFEPQIAA-ADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD---G 1133 (1387)
T ss_pred HHHhcCCCCCceeeecCCCceeEE-cCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC---c
Confidence 345555556777777665555544 3447889999999999884444 348888887733 344444333 3
Q ss_pred eeEEEEe-cCC---cEEeEeeeccccCCc----ce---eeeeecceeEEeecCceeeEEEcccceEEE-eeccccCCCce
Q 015220 258 PLKILSI-EDG---TVLKSFNHLLHRNKK----VD---FIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSA 325 (411)
Q Consensus 258 piKIl~I-~tG---~~L~t~~~LL~h~K~----I~---FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsA 325 (411)
-|+||.= .++ ..|.|.-.-|--.++ -. --+|-.++|++.-+-..|+|||..+-.... || +++...
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP---~~s~t~ 1210 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP---YGSSTL 1210 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc---cCCCcc
Confidence 6888853 332 233332211111111 11 124566777777778999999998755443 22 224455
Q ss_pred EEEEee----ceeEEEE-ecCeEEEEecC-Cc---eeeeeccccccCCCCccceEEEcCCCCE-EEEEecCCCCCccccC
Q 015220 326 FIFLYE----NQLFLTF-RNRTVAVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKADSDDPLAEG 395 (411)
Q Consensus 326 fifLy~----sqlFlSf-sd~tI~iWn~~-Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~-iiS~~~d~~~~~~~~~ 395 (411)
+..|-- ..+++.| .||+||+||-| .. +++..-.|..|.| +.++-+-+.|.- |||||.|-
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~---Iv~~slq~~G~~elvSgs~~G-------- 1279 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP---IVHLSLQRQGLGELVSGSQDG-------- 1279 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc---ceeEEeecCCCcceeeeccCC--------
Confidence 555442 3566666 99999999999 32 7888899999777 899999998887 99999985
Q ss_pred CceEEEeeecc
Q 015220 396 NGKLFVSLLMF 406 (411)
Q Consensus 396 ~gtI~i~~i~t 406 (411)
.|.+||+..
T Consensus 1280 --~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1280 --DIQLLDLRM 1288 (1387)
T ss_pred --eEEEEeccc
Confidence 999999976
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.011 Score=61.58 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=75.0
Q ss_pred CCCeEEEeecCCCeEEEEEeeCc---eEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec---CCcEEeEe
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNY---TMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE---DGTVLKSF 273 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Y---s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~---tG~~L~t~ 273 (411)
...-++++|+.|+++||||.+.. .++.. +.+ +|-.|.-+ +--|||.+.-. -.++||||- .|++..+|
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~Dd---Gt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDD---GTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCC---ceEEEEEhhhccCCCcceeE
Confidence 44568899999999999999998 45544 444 66666666 33366665433 468999986 57777886
Q ss_pred eeccccCCcceeeeee---cceeEEeecCceeeEEEccc
Q 015220 274 NHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDVRN 309 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~---~ekllIKQe~~~LkI~dL~t 309 (411)
+ .|+.||..||-+ -.-+..-.+++.|-||||..
T Consensus 344 k---~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 344 K---YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred E---eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 6 699999999998 45556667999999999976
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.1 Score=56.20 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=126.0
Q ss_pred CeEEEEEeeCceEEEEec--cCceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeee
Q 015220 215 SIYKVFDLKNYTMLYSIS--DKNVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs--~~~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~ 289 (411)
--.|+||-.+-+-|+.|- +..|--+..| .|..|+..+-.++++ +.||+-+-|+.+...+ -+.|+=|.+-|
T Consensus 134 phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~-lSVWdWqk~~~~~~vk----~sne~v~~a~F 208 (626)
T KOG2106|consen 134 PHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHM-LSVWDWQKKAKLGPVK----TSNEVVFLATF 208 (626)
T ss_pred CeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccc-cchhhchhhhccCcce----eccceEEEEEe
Confidence 357999988888787776 4477777777 777777777777665 8999999998887633 23566666655
Q ss_pred c---ceeEEeecCceeeEEEcccceEEEeeccccCCCc--eEEEEe--eceeEEEE-ecCeEEEEecCCceee-eecccc
Q 015220 290 N---EKLLVKQENENLQILDVRNFELTEVSRTEFMTPS--AFIFLY--ENQLFLTF-RNRTVAVWNFRGELVT-SFEDHL 360 (411)
Q Consensus 290 ~---ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps--AfifLy--~sqlFlSf-sd~tI~iWn~~Gel~~-s~e~H~ 360 (411)
+ .+++|-=+..-|--|++..+-+.+= -..|..++ -+.++. ++..-+|+ |+++|.||+..|...+ .---|-
T Consensus 209 HPtd~nliit~Gk~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 209 HPTDPNLIITCGKGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred ccCCCcEEEEeCCceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecC
Confidence 4 5678888999999999999988871 13344443 444544 56889999 9999999999977554 333777
Q ss_pred ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 361 ~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+ -+-.+..-.||.++ ||.||+ .|-.||
T Consensus 288 g-----gv~~L~~lr~Gtll-SGgKDR----------ki~~Wd 314 (626)
T KOG2106|consen 288 G-----GVFSLCMLRDGTLL-SGGKDR----------KIILWD 314 (626)
T ss_pred C-----ceEEEEEecCccEe-ecCccc----------eEEecc
Confidence 7 88889999999766 599999 888887
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.054 Score=58.29 Aligned_cols=140 Identities=16% Similarity=0.289 Sum_probs=102.0
Q ss_pred eEEeeCCCCeEEEee---cCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCcee-------eEEEEec
Q 015220 197 FVEFDDVNGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVP-------LKILSIE 265 (411)
Q Consensus 197 fvEFDd~NGkiLt~~---~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ip-------iKIl~I~ 265 (411)
-|-|-..||-.+..- +.++..-|||-+-- +...++|-| ++.++|.+-|+..-++ +--|+++
T Consensus 159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~--------~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK--------AKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred eeeecccCCCceEEEecCCCccccchhhchhh--------hccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 345555666555543 44677889998754 356677777 7778888888775544 4679999
Q ss_pred CCcEEeEeeeccccC-CcceeeeeecceeE-EeecCceeeEEEcccceEEEeeccccCCCceEEEEe--eceeEEEE-ec
Q 015220 266 DGTVLKSFNHLLHRN-KKVDFIEQFNEKLL-VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTF-RN 340 (411)
Q Consensus 266 tG~~L~t~~~LL~h~-K~I~FLE~~~ekll-IKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy--~sqlFlSf-sd 340 (411)
+|-+.++-...=++. |-|..+.-.+++.. -.-.+.+|.||+..+..+.+ +.+.|+-.+.+|- -+..+||+ +|
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k---~~~aH~ggv~~L~~lr~GtllSGgKD 307 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK---QVHAHDGGVFSLCMLRDGTLLSGGKD 307 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe---EeeecCCceEEEEEecCccEeecCcc
Confidence 999998766443443 44566666666664 45578899999999988887 8889999998765 44778889 99
Q ss_pred CeEEEEe
Q 015220 341 RTVAVWN 347 (411)
Q Consensus 341 ~tI~iWn 347 (411)
++|..||
T Consensus 308 Rki~~Wd 314 (626)
T KOG2106|consen 308 RKIILWD 314 (626)
T ss_pred ceEEecc
Confidence 9999998
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0059 Score=63.38 Aligned_cols=133 Identities=12% Similarity=0.054 Sum_probs=92.2
Q ss_pred ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE
Q 015220 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE 314 (411)
Q Consensus 235 ~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~ 314 (411)
++..|.-.+| -+.-..+|+.-.-++..++.|.....+. -....+|-+...++.+-|+
T Consensus 85 ~~~~vG~~~~--~~~~~~~h~~~~~~~~k~~~~~~~~~~e----~~~~~d~~~~~~a~v~~~l----------------- 141 (398)
T KOG0771|consen 85 GIILVGCDDG--APYRESVHPNGNGRARKLPSGCECFHFE----FVASSDFNAETAANVYQKL----------------- 141 (398)
T ss_pred CeeEeccCCC--cchhhhccccCCeeeeecCCcccccccc----cccccccchhhhhhHhHHH-----------------
Confidence 4444444444 3445556788888888988888754433 2244455554444333222
Q ss_pred eeccccCCCceEEEEeeceeEEEE-ecCeEEEEe-cCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcc
Q 015220 315 VSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWN-FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (411)
Q Consensus 315 v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn-~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~ 392 (411)
..|+.-..+-|-.....+.|+ -|+++|||+ ++-..+-.+..|.. +++.+-.||||++|+|=++|
T Consensus 142 ---~~~g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-----eV~DL~FS~dgk~lasig~d------ 207 (398)
T KOG0771|consen 142 ---VDFGQQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-----EVKDLDFSPDGKFLASIGAD------ 207 (398)
T ss_pred ---hhcCcceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcC-----ccccceeCCCCcEEEEecCC------
Confidence 333333333333344778888 999999999 77888889999999 99999999999999999999
Q ss_pred ccCCceEEEeeecceee
Q 015220 393 AEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 393 ~~~~gtI~i~~i~tGk~ 409 (411)
+--||+..||-+
T Consensus 208 -----~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 208 -----SARVWSVNTGAA 219 (398)
T ss_pred -----ceEEEEeccCch
Confidence 578999999844
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.47 Score=48.87 Aligned_cols=195 Identities=11% Similarity=0.057 Sum_probs=102.1
Q ss_pred cccCCCCeEEeeCCCCeE--EEeec---CCCeEEEEEeeCce--EEEEeccCceeEEEEe-CCEEEEEEec--CCCceee
Q 015220 190 ESLKWPGFVEFDDVNGKV--LTYSA---QDSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTK--ASGHVPL 259 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGki--Lt~~~---~ds~ykVWdL~~Ys--~iysLs~~~VqeIkIS-dG~~Lai~q~--t~~~ipi 259 (411)
+....|.| -|+|+- ++|-+ ....+-+.++.+.+ .|-..+. .....+.| ||..||+... .+..+++
T Consensus 185 ~~~~sP~w----SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g-~~~~p~wSPDG~~Laf~s~~~g~~di~~ 259 (428)
T PRK01029 185 SLSITPTW----MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG-NQLMPTFSPRKKLLAFISDRYGNPDLFI 259 (428)
T ss_pred CCcccceE----ccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC-CccceEECCCCCEEEEEECCCCCcceeE
Confidence 34456655 356542 32222 23445556776654 3333333 34457888 8866665542 3456888
Q ss_pred EEEEecCC---cEEeEeeeccccCCcc-eeeeeecce--eEEee-cCceeeEE--Ecc--cceEEEeeccccCCCceEEE
Q 015220 260 KILSIEDG---TVLKSFNHLLHRNKKV-DFIEQFNEK--LLVKQ-ENENLQIL--DVR--NFELTEVSRTEFMTPSAFIF 328 (411)
Q Consensus 260 KIl~I~tG---~~L~t~~~LL~h~K~I-~FLE~~~ek--llIKQ-e~~~LkI~--dL~--t~e~~~v~~T~f~hpsAfif 328 (411)
.+|++.+| +... +......+ .-...++|+ +...+ .+...+|| |+. .++...+ |. +......
T Consensus 260 ~~~~~~~g~~g~~~~----lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l--t~--~~~~~~~ 331 (428)
T PRK01029 260 QSFSLETGAIGKPRR----LLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL--TK--KYRNSSC 331 (428)
T ss_pred EEeecccCCCCcceE----eecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe--cc--CCCCccc
Confidence 88999874 3222 22211112 234667775 33333 33444555 443 2444443 21 1112222
Q ss_pred Eeec----eeEEEE-ec--CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEE
Q 015220 329 LYEN----QLFLTF-RN--RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFV 401 (411)
Q Consensus 329 Ly~s----qlFlSf-sd--~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i 401 (411)
...+ .+.++. .+ ..|.+||+.|.-.+.+..... ...+...||||+.|+-...+. +.+.|-+
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~-----~~~~p~wSpDG~~L~f~~~~~-------g~~~L~~ 399 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE-----NKESPSWAIDSLHLVYSAGNS-------NESELYL 399 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC-----CccceEECCCCCEEEEEECCC-------CCceEEE
Confidence 2223 333333 22 368999998444454543322 445688999999876544332 3468899
Q ss_pred eeecceee
Q 015220 402 SLLMFVTC 409 (411)
Q Consensus 402 ~~i~tGk~ 409 (411)
+|+.+|+.
T Consensus 400 vdl~~g~~ 407 (428)
T PRK01029 400 ISLITKKT 407 (428)
T ss_pred EECCCCCE
Confidence 99988875
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.052 Score=61.64 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=125.4
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCc-------eeeEEEEec-CCcEE
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGH-------VPLKILSIE-DGTVL 270 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~-------ipiKIl~I~-tG~~L 270 (411)
++=..|.++.+-... +..-+||.+...++..+-..+..- ..-..+...+...-+ --|-+|..+ |-++.
T Consensus 94 ~l~~e~k~i~l~~~~-ns~~i~d~~~~~~~~~i~~~er~~---l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 94 KLFEENKKIALVTSR-NSLLIRDSKNSSVLSKIQSDERCT---LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred chhhhcceEEEEEcC-ceEEEEecccCceehhcCCCceEE---EEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 444556676665554 457789998888776665442211 111111111111111 124456555 22222
Q ss_pred eEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEE--EeeceeEEEEecCeEEEE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF--LYENQLFLTFRNRTVAVW 346 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif--Ly~sqlFlSfsd~tI~iW 346 (411)
.+.||.-.|=-|--+.++. ...+++-.+++|++.+++--. .|.|+||.-+-. +..+.+.-.+.|=|.++|
T Consensus 170 ----~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW 243 (967)
T KOG0974|consen 170 ----RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPNRIITVGEDCTCRVW 243 (967)
T ss_pred ----eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccceeEEeccceEEEEE
Confidence 3678888887888866655 556699999999999987544 599999986543 344455555589999999
Q ss_pred ecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 347 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 347 n~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.-+|+-+..+++|..- -+-.+++.+++-+++++-.|. +|++||+.+
T Consensus 244 ~~~~~~l~~y~~h~g~----~iw~~~~~~~~~~~vT~g~Ds----------~lk~~~l~~ 289 (967)
T KOG0974|consen 244 GVNGTQLEVYDEHSGK----GIWKIAVPIGVIIKVTGGNDS----------TLKLWDLNG 289 (967)
T ss_pred ecccceehhhhhhhhc----ceeEEEEcCCceEEEeeccCc----------chhhhhhhc
Confidence 9999999999999984 577899999999999999997 999999865
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0043 Score=63.44 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=57.0
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+++++ -||.|-||||. =.+-+.|..|.. -+.++.-|+||..|++.|.|- +|++||++.|.|+
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-----pi~sl~WS~dgr~LltsS~D~----------si~lwDl~~gs~l 100 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFRIARMLSAHVR-----PITSLCWSRDGRKLLTSSRDW----------SIKLWDLLKGSPL 100 (405)
T ss_pred ceeeeeccCCcEEEEEccccchhhhhhcccc-----ceeEEEecCCCCEeeeecCCc----------eeEEEeccCCCce
Confidence 556677 89999999999 457779999999 899999999999999999999 9999999999875
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.048 Score=58.85 Aligned_cols=183 Identities=17% Similarity=0.259 Sum_probs=127.5
Q ss_pred EEEeecCCCeEEEEEe--------eCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec---------C
Q 015220 207 VLTYSAQDSIYKVFDL--------KNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE---------D 266 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL--------~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~---------t 266 (411)
+|+....++++|+|+| +..++||+.-++ .|..+.++ +|..+...-.-. .|..|++. +
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg---~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG---TIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc---eeeeeccCCCCCcccccC
Confidence 3455566999999999 235688999987 78888887 777655444333 36778665 1
Q ss_pred CcEEeEeeeccccCCcceeeeee--cceeEEeecCceeeEEEcccceE--EE----------eeccccC---CCceEEEE
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFEL--TE----------VSRTEFM---TPSAFIFL 329 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~--~~----------v~~T~f~---hpsAfifL 329 (411)
-..+-. .++||.-.|--++.+ ++.|+.-+.+.++++|+-...++ +. |..|-+. .-..|.+.
T Consensus 385 p~vl~~--~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~ 462 (577)
T KOG0642|consen 385 PSVLSG--TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFG 462 (577)
T ss_pred cchhcc--ceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccc
Confidence 112211 488999888666665 45678888999999999988777 11 1111110 00111121
Q ss_pred ee----------------------------------c--eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceE
Q 015220 330 YE----------------------------------N--QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 371 (411)
Q Consensus 330 y~----------------------------------s--qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i 371 (411)
|+ + -+-++. .|++|++.+.. |+++-+..-|.- ....+
T Consensus 463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-----svtsl 537 (577)
T KOG0642|consen 463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-----SVTSL 537 (577)
T ss_pred cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc-----eecce
Confidence 11 0 223333 89999999999 999999999999 99999
Q ss_pred EEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 372 YITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 372 ~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+|-|.|=.++||++|. ++-+|.+..-.|
T Consensus 538 ai~~ng~~l~s~s~d~----------sv~l~kld~k~~ 565 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDG----------SVRLWKLDVKTC 565 (577)
T ss_pred eecCCCceEEeecCCc----------eeehhhccchhe
Confidence 9999999999999997 888888765444
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.068 Score=55.98 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=104.4
Q ss_pred ccCceeEEEEe-CCE-EEEEEecCCCceeeEEEEecCCc---EEeEeeeccccCCcceeeeeecceeEEee--cCceeeE
Q 015220 232 SDKNVQEIKIS-PGI-MLLIFTKASGHVPLKILSIEDGT---VLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQI 304 (411)
Q Consensus 232 s~~~VqeIkIS-dG~-~Lai~q~t~~~ipiKIl~I~tG~---~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI 304 (411)
.++.|..+.+- ++. +||+.-..+...+-+|..-+.|+ .+.-..-|-+|.+.|+.+-..+++-++++ .+..+-|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 34455555554 222 66666666554444444334444 22233357899999999999999999988 4567788
Q ss_pred EEcc--------c-----ceEEEeeccccCCCceEEEEeec--eeEE-EE-ecCeEEEEecC-CceeeeeccccccCCCC
Q 015220 305 LDVR--------N-----FELTEVSRTEFMTPSAFIFLYEN--QLFL-TF-RNRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (411)
Q Consensus 305 ~dL~--------t-----~e~~~v~~T~f~hpsAfifLy~s--qlFl-Sf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c 366 (411)
|=.. + .|.+.|.+.+-+|-+...-|+-+ ..|+ +. .|+++++||.+ |.+++.+.+|..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~----- 166 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH----- 166 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-----
Confidence 8766 5 77788888888898888888766 3344 44 89999999999 999999999998
Q ss_pred ccceEEEcCCCCEEEEEecCC
Q 015220 367 NTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+++-++-.|-.+.+.|=+.|.
T Consensus 167 yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ccceeecchhhhhhhhhccCc
Confidence 455555555555555555444
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.12 Score=57.80 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=112.9
Q ss_pred EeeCCCC--eEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEEE---EEEecCCCceeeEEEEecCCcEEeE
Q 015220 199 EFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIML---LIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 199 EFDd~NG--kiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~L---ai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
++|..+. -.+..+..+++++|||..+.+++.+.+.+ .|....+.+-++- ..+--...+.-+--..-+.++-...
T Consensus 64 ~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~ 143 (792)
T KOG1963|consen 64 IVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSR 143 (792)
T ss_pred eecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceee
Confidence 4444444 34557889999999999999999888755 6666655533321 1111111111111111223333333
Q ss_pred eeeccccCCcceeeeee--cceeEEee--------cCceeeEEEcccceEEEeecc-ccCCCceEEEEe--ec-eeEEEE
Q 015220 273 FNHLLHRNKKVDFIEQF--NEKLLVKQ--------ENENLQILDVRNFELTEVSRT-EFMTPSAFIFLY--EN-QLFLTF 338 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~--~ekllIKQ--------e~~~LkI~dL~t~e~~~v~~T-~f~hpsAfifLy--~s-qlFlSf 338 (411)
+...--...+.||+..+ +.-+..-+ -.-++-+|++.++....++.- ---|..-+-+.+ .+ ....++
T Consensus 144 ~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~ 223 (792)
T KOG1963|consen 144 FVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAG 223 (792)
T ss_pred eEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEe
Confidence 22222223344444444 33333322 345778899988663322111 111333233333 33 455566
Q ss_pred -ecCeEEEEecCC-c----eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 339 -RNRTVAVWNFRG-E----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 -sd~tI~iWn~~G-e----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+||.|.+|.=-| + -.|.|-=|-. +++.+.-|+||-.|.||.... -.-+|.+.|||
T Consensus 224 d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-----~V~~L~fS~~G~~LlSGG~E~----------VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 224 DSDGRILVWRDFGSSDDSETCTLLHWHHD-----EVNSLSFSSDGAYLLSGGREG----------VLVLWQLETGK 284 (792)
T ss_pred ccCCcEEEEeccccccccccceEEEeccc-----ccceeEEecCCceEeecccce----------EEEEEeecCCC
Confidence 999999998777 2 4456666655 899999999999999999886 88899999987
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.25 Score=53.56 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=84.7
Q ss_pred ccccCCcceeeee--ecceeEEeecCceeeEEEcc-cceEEEeeccccC-CCceEEEEeec----eeEEEE-ecCeEEEE
Q 015220 276 LLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVR-NFELTEVSRTEFM-TPSAFIFLYEN----QLFLTF-RNRTVAVW 346 (411)
Q Consensus 276 LL~h~K~I~FLE~--~~ekllIKQe~~~LkI~dL~-t~e~~~v~~T~f~-hpsAfifLy~s----qlFlSf-sd~tI~iW 346 (411)
...|--+|+.+.. |..++++..++=..+||... ...+. +.|. ++.-+..++-| -+|++. .+|.|.+|
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl----~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL----LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc----hhhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 3455567777764 56788999999999999988 44444 3343 44447778877 789999 69999999
Q ss_pred ecC---CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 347 NFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 347 n~~---Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
||. -+++++..-+.. ..+.+.-++.|++|+.|..- |+|.|+++..
T Consensus 470 DLl~~~~~Pv~s~~~~~~-----~l~~~~~s~~g~~lavGd~~----------G~~~~~~l~~ 517 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKVCSP-----ALTRVRWSPNGKLLAVGDAN----------GTTHILKLSE 517 (555)
T ss_pred hhhccccCCccccccccc-----ccceeecCCCCcEEEEecCC----------CcEEEEEcCc
Confidence 998 447777666633 77888899999999998654 6999999853
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.042 Score=59.13 Aligned_cols=187 Identities=18% Similarity=0.223 Sum_probs=127.0
Q ss_pred CCeEEeeC--CCCeEEEeecCCCeEEEEEeeCce----EEEEeccC---ceeEEEEeCCEEEEEEecCCCceeeEEEEec
Q 015220 195 PGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYT----MLYSISDK---NVQEIKISPGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 195 PgfvEFDd--~NGkiLt~~~~ds~ykVWdL~~Ys----~iysLs~~---~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
||-.-|+- .|--++++.+.|+.+++|.=..-. .+..++.+ =|.-++.| |..++-+.++. +|||||+
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~--Vkiwdl~ 109 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS---LYEISGGQSGC--VKIWDLR 109 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc---eeeeccCcCce--eeehhhH
Confidence 55444432 334678888999999999865542 33444433 23333333 44444444443 6999999
Q ss_pred CCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEE--Eeec----eeEEE
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIF--LYEN----QLFLT 337 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfif--Ly~s----qlFlS 337 (411)
.++.+. +|-+|+..|-.+.--+---+|++ -+.-|-|.++.++... |.|.||+...- |-++ -++.+
T Consensus 110 -~kl~hr--~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t----t~f~~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 110 -AKLIHR--FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT----TTFTIDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred -HHHHhh--hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc----cceecCCCCeEEEeecccccceeeEe
Confidence 555554 26689988888887766666666 6788999999999887 89999976554 5555 33333
Q ss_pred E-ecCeEEEEecCCc-eee-eeccccccCCCCccceEEEcCCC-CEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 338 F-RNRTVAVWNFRGE-LVT-SFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 338 f-sd~tI~iWn~~Ge-l~~-s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
. -+|+|.+||.+|- +.- -.+.|.. -..-|-.||-+ .+|+|-.-|+ .|+++|+.+-+
T Consensus 183 asd~G~VtlwDv~g~sp~~~~~~~HsA-----P~~gicfspsne~l~vsVG~Dk----------ki~~yD~~s~~ 242 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFHASEAHSA-----PCRGICFSPSNEALLVSVGYDK----------KINIYDIRSQA 242 (673)
T ss_pred eccCCeEEEEeccCCCcccchhhhccC-----CcCcceecCCccceEEEecccc----------eEEEeeccccc
Confidence 3 6779999999976 443 5678887 55566666655 4677888888 99999987543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.042 Score=57.27 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=111.6
Q ss_pred CeEEeeCCCCeEEEeecCCCeEEEEEeeCceE-EEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~-iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
.-|-|- .+|..|+..+.|+++|||+.-..+. ++.+.++ +|.++.+| ||.+|+.-... -..||+..||-.+.+
T Consensus 148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d----~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD----SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC----ceEEEEeccCchhhh
Confidence 344453 5778888899999999999666664 4555555 99999999 99987765444 789999999955554
Q ss_pred eeeccccCCc-----ceeeeee-cceeEEe---ecCceeeEEEcccceE--EEeeccccCCCceEEEEeec--eeEEEE-
Q 015220 273 FNHLLHRNKK-----VDFIEQF-NEKLLVK---QENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYEN--QLFLTF- 338 (411)
Q Consensus 273 ~~~LL~h~K~-----I~FLE~~-~ekllIK---Qe~~~LkI~dL~t~e~--~~v~~T~f~hpsAfifLy~s--qlFlSf- 338 (411)
+=+..|+ +.|...- .|.++++ +.+..+..||+-.-.. +.-.++.-.--+...+++.+ .-|+..
T Consensus 223 ---~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 223 ---KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred ---cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 2112222 2222111 1333322 2334444444322111 00000000011345566666 445555
Q ss_pred -ecCeEEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 339 -RNRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 339 -sd~tI~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.||.|.|++.. -..+- .=+-|.+ .+..+.++||-....|=|.|.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~aH~~-----~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKEAHLG-----FVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehhhhee-----eeeeEEEcCCcCcccccccCC
Confidence 89999999988 55444 6678999 999999999999999877776
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.65 Score=47.89 Aligned_cols=177 Identities=12% Similarity=0.029 Sum_probs=94.1
Q ss_pred EEEEEeeCceEEEEeccC--ceeEEEEe-CCEE--EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 217 YKVFDLKNYTMLYSISDK--NVQEIKIS-PGIM--LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 217 ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~--Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
+-+.|...+.. ..|+.. ....=+.| ||.- ++.....+.+.-|-+.++.+|+...-.. +=+ .......++|
T Consensus 167 l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g---~~~~p~wSPD 241 (428)
T PRK01029 167 LWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQG---NQLMPTFSPR 241 (428)
T ss_pred EEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCC---CccceEECCC
Confidence 33444444443 445533 45666888 6532 2223334455667788999987544222 111 1223466777
Q ss_pred ee--EEee---cCce--eeEEEccc---ceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEec--C--Cceeee
Q 015220 292 KL--LVKQ---ENEN--LQILDVRN---FELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNF--R--GELVTS 355 (411)
Q Consensus 292 kl--lIKQ---e~~~--LkI~dL~t---~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~--~--Gel~~s 355 (411)
+- ...+ ++.. +++||+.+ ++...+....+.......+-... ++.++- .++..++|.. . |...+.
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 53 2222 2223 34478776 45555433222232333333222 343333 5666777754 3 223444
Q ss_pred eccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+..+.. +......||||+.|+..+.+. +...|.+||+.+|++.
T Consensus 322 lt~~~~-----~~~~p~wSPDG~~Laf~~~~~-------g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 322 LTKKYR-----NSSCPAWSPDGKKIAFCSVIK-------GVRQICVYDLATGRDY 364 (428)
T ss_pred eccCCC-----CccceeECCCCCEEEEEEcCC-------CCcEEEEEECCCCCeE
Confidence 444433 445678999999888665442 3458999999999863
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.048 Score=55.51 Aligned_cols=92 Identities=20% Similarity=0.156 Sum_probs=67.5
Q ss_pred cCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 212 AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
.+|+++..||++|.++.++|.+-+.|-++==| +-++|
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD---------------------------------fNpnk---------- 226 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD---------------------------------FNPNK---------- 226 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeecc---------------------------------CCCCc----------
Confidence 57999999999999999999976544333111 01111
Q ss_pred eeEEee--cCceeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC
Q 015220 292 KLLVKQ--ENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 292 kllIKQ--e~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~ 349 (411)
..++.. .+..++|||.++ ..+.. ++=+|.-|+-++-.+ ||.||+ +|-.|-+|.-.
T Consensus 227 q~~lvt~gDdgyvriWD~R~tk~pv~---el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 227 QHILVTCGDDGYVRIWDTRKTKFPVQ---ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred eEEEEEcCCCccEEEEeccCCCcccc---ccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 012233 567899999987 55665 788899999999877 999999 88899999754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0095 Score=61.53 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=87.1
Q ss_pred ccCCcceeeeeec-ceeEEee-cCceeeEEEcccc---eEEEeeccccCCCceEEEEeec-----eeEEEEecCeEEEEe
Q 015220 278 HRNKKVDFIEQFN-EKLLVKQ-ENENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYEN-----QLFLTFRNRTVAVWN 347 (411)
Q Consensus 278 ~h~K~I~FLE~~~-ekllIKQ-e~~~LkI~dL~t~---e~~~v~~T~f~hpsAfifLy~s-----qlFlSfsd~tI~iWn 347 (411)
..+.+|=.+.-.. +.|++.- .+.-|-.+||+.+ ...+ .+.+.|++++.+|-+= .|..|..+++|.+||
T Consensus 250 ~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~--a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 250 QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC--AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD 327 (425)
T ss_pred ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc--eEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence 3556665554444 4555544 6778889999885 3333 3778899999997654 355566999999999
Q ss_pred cC----CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 348 FR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~----Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+| |--|++.|||...+ .-+-+-|-|..-.|+|+..|- --.||.+..|.++
T Consensus 328 ~R~~K~~~~V~qYeGHvN~~---a~l~~~v~~eeg~I~s~GdDc----------ytRiWsl~~ghLl 381 (425)
T KOG2695|consen 328 LRATKCKKSVMQYEGHVNLS---AYLPAHVKEEEGSIFSVGDDC----------YTRIWSLDSGHLL 381 (425)
T ss_pred ehhhhcccceeeeecccccc---cccccccccccceEEEccCee----------EEEEEecccCcee
Confidence 99 44599999999842 234466888999999987775 8899999999875
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.25 Score=49.72 Aligned_cols=207 Identities=15% Similarity=0.123 Sum_probs=117.0
Q ss_pred eEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc
Q 015220 156 VYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN 235 (411)
Q Consensus 156 v~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~ 235 (411)
=.+.|+|++..++.. +- . ...| +=-.|.| -+++..|++.-..++++||||-. +.||.|+...
T Consensus 23 Rsa~Ddf~si~~kcq----Vp-k---D~~P--QWRkl~W-------SpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~ 84 (282)
T PF15492_consen 23 RSAKDDFSSIIGKCQ----VP-K---DPNP--QWRKLAW-------SPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM 84 (282)
T ss_pred EeccCCchheeEEEe----cC-C---CCCc--hheEEEE-------CCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc
Confidence 346799998865543 10 1 1112 1123444 38999999999999999999998 8888888431
Q ss_pred ----eeEEEEeCCEEEEE--------------EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc-eeEEe
Q 015220 236 ----VQEIKISPGIMLLI--------------FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE-KLLVK 296 (411)
Q Consensus 236 ----VqeIkISdG~~Lai--------------~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e-kllIK 296 (411)
...-.|++-+|+-. +...=....|-+-..+..+..++|.+..+...-|....-+++ .||+-
T Consensus 85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV 164 (282)
T PF15492_consen 85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV 164 (282)
T ss_pred ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence 11112222222222 222223333333445677888899988888888888877777 44554
Q ss_pred ecCce------------eeEEEcccceEEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecCCceeeeeccccccCC
Q 015220 297 QENEN------------LQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHP 364 (411)
Q Consensus 297 Qe~~~------------LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~Gel~~s~e~H~~~~~ 364 (411)
-+.++ |-.|=+.++.++..+-+.+.. .+ +....+--+|.+- -++-|..+ .-.+
T Consensus 165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~--~~----------~~~~~~~~~~~~~--~~~~fs~~-~~~~ 229 (282)
T PF15492_consen 165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED--DI----------TASSKRRGLLRIP--SFKFFSRQ-GQEQ 229 (282)
T ss_pred eccCCCCCccccccccCceEEEEcCCCCcEEEccccCc--cc----------cccccccceeecc--ceeeeecc-ccCC
Confidence 43332 456666666666532222111 00 0011111222211 11112211 1112
Q ss_pred CCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 365 ~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+ .+-++-|||||.+|++-..+- +|-+|+|=+
T Consensus 230 d-~i~kmSlSPdg~~La~ih~sG----------~lsLW~iPs 260 (282)
T PF15492_consen 230 D-GIFKMSLSPDGSLLACIHFSG----------SLSLWEIPS 260 (282)
T ss_pred C-ceEEEEECCCCCEEEEEEcCC----------eEEEEecCc
Confidence 2 456788999999999998884 999999854
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0033 Score=70.32 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=80.8
Q ss_pred eeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCce--eeEEEcccceEEEeeccccCCCceEEEEeecee
Q 015220 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENEN--LQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (411)
Q Consensus 257 ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~--LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sql 334 (411)
.=+|||+-+|+.++.+ .=||.-+|-=+++.-++++|+..+.- |++|=|.++++.. -+++|.-|+.+++.+--
T Consensus 212 ~lvKiwS~et~~~lAs---~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~ 285 (1113)
T KOG0644|consen 212 RLVKIWSMETARCLAS---CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR 285 (1113)
T ss_pred ceeeeeeccchhhhcc---CCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc
Confidence 3489999999999999 88999999999999999999998888 9999999999998 68999999999998854
Q ss_pred EEEEecCeEEEEecCCc
Q 015220 335 FLTFRNRTVAVWNFRGE 351 (411)
Q Consensus 335 FlSfsd~tI~iWn~~Ge 351 (411)
=-|.-|+|+++||-+-+
T Consensus 286 ~sss~dgt~~~wd~r~~ 302 (1113)
T KOG0644|consen 286 ASSSDDGTCRIWDARLE 302 (1113)
T ss_pred ccCCCCCceEecccccc
Confidence 46778999999999833
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.47 Score=48.79 Aligned_cols=241 Identities=16% Similarity=0.205 Sum_probs=138.0
Q ss_pred EeCCCCceEEEEEeecCCCeEEEEE------eEec-CCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCC
Q 015220 131 LNVTADEVIRSLFYNKNNDSLITVS------VYAS-DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV 203 (411)
Q Consensus 131 lN~s~~evIrsifyN~~n~slI~vS------v~~s-d~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~ 203 (411)
|-..++.+|+.+-|+..-+-+-+-| +|.+ ++=+.-.|-+- -|.+ . ..+ =...-.||.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~----Wrah---~-~Si-~rV~WAhPEf------ 72 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS----WRAH---D-GSI-WRVVWAHPEF------ 72 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeee----EEec---C-CcE-EEEEecCccc------
Confidence 4456678999999999888877633 3431 11111111110 0000 0 000 1244567877
Q ss_pred CCeEEEeecCCCeEEEEEee---------CceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCC-----
Q 015220 204 NGKVLTYSAQDSIYKVFDLK---------NYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDG----- 267 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~---------~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG----- 267 (411)
|+|++.++-|.+.+||-=+ .....-+|.|. .|.+|+++|-++=+.+-....--.+.|+...+=
T Consensus 73 -GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 73 -GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred -cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 9999999999999999762 23456778877 999999996544333333444444444433322
Q ss_pred -cEEeEee---eccccCCcceee-----eeecceeEEeecCc------eeeEEEcccce-EEEeeccccCCCceEEEEee
Q 015220 268 -TVLKSFN---HLLHRNKKVDFI-----EQFNEKLLVKQENE------NLQILDVRNFE-LTEVSRTEFMTPSAFIFLYE 331 (411)
Q Consensus 268 -~~L~t~~---~LL~h~K~I~FL-----E~~~ekllIKQe~~------~LkI~dL~t~e-~~~v~~T~f~hpsAfifLy~ 331 (411)
++++++. ..++..+...|- -.+.+.++.-.-++ +.+||--..+- .+..-+++=+|+.-+.-+.-
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 2222211 111222222111 11222233333333 77888766544 55556677789988877764
Q ss_pred c-------eeEEEE-ecCeEEEEecCC---------------------ceeeeeccccccCCCCccceEEEcCCCCEEEE
Q 015220 332 N-------QLFLTF-RNRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 332 s-------qlFlSf-sd~tI~iWn~~G---------------------el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
. +++.+. .|| |+||+..+ +++..|.+|.. .+=.+--.=.|-+|.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-----~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-----EVWRVRWNMTGTILSS 305 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-----ceEEEEEeeeeeEEee
Confidence 3 777787 666 99999985 24556777764 5555555556777776
Q ss_pred EecCCCCCccccCCceEEEee
Q 015220 383 YCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 383 ~~~d~~~~~~~~~~gtI~i~~ 403 (411)
-..| |.+++|-
T Consensus 306 tGdD----------G~VRLWk 316 (361)
T KOG2445|consen 306 TGDD----------GCVRLWK 316 (361)
T ss_pred cCCC----------ceeeehh
Confidence 6555 4888773
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.4 Score=49.25 Aligned_cols=178 Identities=12% Similarity=0.142 Sum_probs=129.1
Q ss_pred cCCCeEEEEEeeCceEEEEec--cC--ceeEEEEeCCEEEEEEecCC---CceeeEEEEecCCcEEeEeeeccccCCcce
Q 015220 212 AQDSIYKVFDLKNYTMLYSIS--DK--NVQEIKISPGIMLLIFTKAS---GHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys~iysLs--~~--~VqeIkISdG~~Lai~q~t~---~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~ 284 (411)
+.+.=|||++..+++...+-- +. .+.|+=..-..+.+++-+.+ +..-+.|||=+-.+++.++. -++||-
T Consensus 23 a~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~----f~~~I~ 98 (346)
T KOG2111|consen 23 ATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS----FNSEIK 98 (346)
T ss_pred EecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE----ecccee
Confidence 556779999999988753333 22 34444444666677765554 44558899988888888855 468999
Q ss_pred eeeeecceeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec--eeEEEE---ecCeEEEEecCCcee---ee
Q 015220 285 FIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN--QLFLTF---RNRTVAVWNFRGELV---TS 355 (411)
Q Consensus 285 FLE~~~ekllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s--qlFlSf---sd~tI~iWn~~Gel~---~s 355 (411)
-+-+.++.+.+-=+ ++|.+|...+ =+...+-.|.- .|...-++-.. .-+|.| .-|.|.|=+|.-.-. -.
T Consensus 99 ~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~ 176 (346)
T KOG2111|consen 99 AVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI 176 (346)
T ss_pred eEEEcCCeEEEEec-CeEEEEEcCCChhheeeeeccc-CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE
Confidence 99999998876655 5899999884 34444444553 57774444433 556666 778999999984433 57
Q ss_pred eccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCce-EEEeeecceeee
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGK-LFVSLLMFVTCK 410 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gt-I~i~~i~tGk~~ 410 (411)
.+-|.. .+.-++++-||-++.++|.-- | |.|||-.+|+.+
T Consensus 177 I~AH~s-----~Iacv~Ln~~Gt~vATaStkG----------TLIRIFdt~~g~~l 217 (346)
T KOG2111|consen 177 INAHDS-----DIACVALNLQGTLVATASTKG----------TLIRIFDTEDGTLL 217 (346)
T ss_pred EEcccC-----ceeEEEEcCCccEEEEeccCc----------EEEEEEEcCCCcEe
Confidence 788998 999999999999999998763 5 899999999876
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.099 Score=57.80 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=94.8
Q ss_pred eeeEEEEec-CCcEEeEeeeccccCCcc---eeeeeecceeEEeecCceeeEEEcccceEEEeeccc--cCCCceE-EEE
Q 015220 257 VPLKILSIE-DGTVLKSFNHLLHRNKKV---DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE--FMTPSAF-IFL 329 (411)
Q Consensus 257 ipiKIl~I~-tG~~L~t~~~LL~h~K~I---~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~--f~hpsAf-ifL 329 (411)
.-+-|+-|. -|+..++..+|-+|.-.| .|.--..+-|--.+.+.+.|||-|-.|-...+++++ +++..-. -+|
T Consensus 55 ~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l 134 (1012)
T KOG1445|consen 55 GKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECL 134 (1012)
T ss_pred ceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEe
Confidence 344444444 356666666666665443 444433344456789999999999876655554432 1111111 111
Q ss_pred e---e-ceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 330 Y---E-NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 330 y---~-sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
- + -.|+.+..-+++.|||.. +.....+.+|-- .+.+.--|+||.++...|||+ .|.|+|-
T Consensus 135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d-----~vQSa~WseDG~llatscKdk----------qirifDP 199 (1012)
T KOG1445|consen 135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD-----KVQSADWSEDGKLLATSCKDK----------QIRIFDP 199 (1012)
T ss_pred ecccCcCceEEeccCceEEEEEcccCceeecccCCch-----hhhccccccCCceEeeecCCc----------ceEEeCC
Confidence 1 1 288999999999999999 999999999998 899999999999999999999 8888886
Q ss_pred cc
Q 015220 405 MF 406 (411)
Q Consensus 405 ~t 406 (411)
.+
T Consensus 200 Ra 201 (1012)
T KOG1445|consen 200 RA 201 (1012)
T ss_pred cc
Confidence 54
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.51 E-value=3 Score=41.64 Aligned_cols=202 Identities=16% Similarity=0.204 Sum_probs=119.4
Q ss_pred eEEeeCCCCeEEEeecCCC---------eEEEEEeeCc------eEEEEeccCc--eeEEEEe-CCEEEEEEecCCCc-e
Q 015220 197 FVEFDDVNGKVLTYSAQDS---------IYKVFDLKNY------TMLYSISDKN--VQEIKIS-PGIMLLIFTKASGH-V 257 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds---------~ykVWdL~~Y------s~iysLs~~~--VqeIkIS-dG~~Lai~q~t~~~-i 257 (411)
+++|-+ +|+.+.|..-+. -++||-.+=. .+||+-.++. ...+..| ||.+|++....+.. .
T Consensus 174 ~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 174 SVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSES 252 (414)
T ss_dssp EEEECT-TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEE
T ss_pred eEEEeC-CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCC
Confidence 378865 666666665433 5666665532 2788888774 5788888 99999998888877 9
Q ss_pred eeEEEEecCC-cEEeEeeeccccC-CcceeeeeecceeEEee----cCceeeEEEcccceE---E-EeeccccCCCceEE
Q 015220 258 PLKILSIEDG-TVLKSFNHLLHRN-KKVDFIEQFNEKLLVKQ----ENENLQILDVRNFEL---T-EVSRTEFMTPSAFI 327 (411)
Q Consensus 258 piKIl~I~tG-~~L~t~~~LL~h~-K~I~FLE~~~ekllIKQ----e~~~LkI~dL~t~e~---~-~v~~T~f~hpsAfi 327 (411)
.+-+++++++ .....+..+..+. .-.++++-.++.++|.. .+.+|--.|+.+.+. . .+........-.-+
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~ 332 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV 332 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE
Confidence 9999999987 1111222244444 44478889999998877 446777778888662 2 22222111122222
Q ss_pred EEeeceeEEEE-ecC--eEEEEecC-CceeeeeccccccCCCCccceEEEcCCC-CEEEEEecCCCCCccccCCceEEEe
Q 015220 328 FLYENQLFLTF-RNR--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 328 fLy~sqlFlSf-sd~--tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
.+....|+++. .++ .|.+|++. |.......-=.. ..+..+--.+++ ++.|+++.-. .-++|--+
T Consensus 333 ~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~----g~v~~~~~~~~~~~~~~~~ss~~-------~P~~~y~~ 401 (414)
T PF02897_consen 333 SLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA----GSVSGVSGDFDSDELRFSYSSFT-------TPPTVYRY 401 (414)
T ss_dssp EEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS----SEEEEEES-TT-SEEEEEEEETT-------EEEEEEEE
T ss_pred EEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc----eEEeccCCCCCCCEEEEEEeCCC-------CCCEEEEE
Confidence 33344777777 443 78899999 776554332111 112222222333 4556666553 22699999
Q ss_pred eecceeee
Q 015220 403 LLMFVTCK 410 (411)
Q Consensus 403 ~i~tGk~~ 410 (411)
|+.|||+.
T Consensus 402 d~~t~~~~ 409 (414)
T PF02897_consen 402 DLATGELT 409 (414)
T ss_dssp ETTTTCEE
T ss_pred ECCCCCEE
Confidence 99999874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.071 Score=60.64 Aligned_cols=183 Identities=17% Similarity=0.194 Sum_probs=109.8
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
+.-|+++- .+.|+ ++...|.|.|+.....|..+..-+..++..+-|+..+.. -..||.-.-+++..
T Consensus 10 l~~~~~~~-----~~lla--g~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~-------~~~v~~~~~~~v~~ 75 (967)
T KOG0974|consen 10 LNLPQLVS-----DYLLA--GSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLS-------GKIVTCAKSDEVYV 75 (967)
T ss_pred ccchhhcc-----ceeee--cCCCceEEeeCCchhHhhhhhhhcccccccccccceecc-------ceEEEEEeecceee
Confidence 34466654 56666 677788999988888777666444444442222221111 01112222122211
Q ss_pred EeeeccccCCcceeeeee------------cceeEEeecCceeeEEEcccceEEE-eeccccC--CCceEEEEeeceeEE
Q 015220 272 SFNHLLHRNKKVDFIEQF------------NEKLLVKQENENLQILDVRNFELTE-VSRTEFM--TPSAFIFLYENQLFL 336 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~------------~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~--hpsAfifLy~sqlFl 336 (411)
. ....++++.+ +-++.+-...+.+-|||...+-... +.-+++- -+.+.+-...+++++
T Consensus 76 ~-------~~~~~~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 76 K-------EASNQIIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred c-------chhhhhhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEE
Confidence 1 0111222222 2344677788888999888754432 1112210 111222233447776
Q ss_pred EE--ecCeEEEEecCCceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 337 TF--RNRTVAVWNFRGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 337 Sf--sd~tI~iWn~~Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.. .-+.|-+|.+.++=.- .+.||.+ .+=.+--|.||..|+|.|.|+ ||.||+|.|++..
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG-----~iF~i~~s~dg~~i~s~SdDR----------siRlW~i~s~~~~ 210 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEG-----SIFSIVTSLDGRYIASVSDDR----------SIRLWPIDSREVL 210 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCC-----ceEEEEEccCCcEEEEEecCc----------ceeeeeccccccc
Confidence 66 7889999999977444 5999999 777778889999999999999 9999999999854
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.015 Score=65.39 Aligned_cols=101 Identities=17% Similarity=0.313 Sum_probs=81.4
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
-||- .|+-++-+.+|--.|||.+.|-.++-++.++ ++.+..+| +..|+|-... ---|.+|.++||.++.-
T Consensus 197 ~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~---D~vIrvWrl~~~~pvsv--- 269 (1113)
T KOG0644|consen 197 IFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN---DKVIRVWRLPDGAPVSV--- 269 (1113)
T ss_pred eecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc---CceEEEEecCCCchHHH---
Confidence 3555 4566666788888999999999999999988 99999999 8877665432 33489999999999987
Q ss_pred ccccCCcceeeeeecceeEEeecCceeeEEEcc
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~ 308 (411)
|.||.--|-.|+-++=- --|.+..+.|||-+
T Consensus 270 LrghtgavtaiafsP~~--sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 270 LRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR 300 (1113)
T ss_pred HhccccceeeeccCccc--cCCCCCceEecccc
Confidence 88999888877766644 44788999999998
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.16 Score=53.37 Aligned_cols=102 Identities=12% Similarity=0.090 Sum_probs=83.9
Q ss_pred EEee--cCceeeEEEcccce------EEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC--------C---
Q 015220 294 LVKQ--ENENLQILDVRNFE------LTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR--------G--- 350 (411)
Q Consensus 294 lIKQ--e~~~LkI~dL~t~e------~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~--------G--- 350 (411)
.++. ++++|+||=+.+++ ..+--.++-.|-.|+..+-.+ +++.|+ -+++|-+|... .
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 4444 78999999998844 555566788899999988877 799999 67799999987 3
Q ss_pred ---c---eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ---E---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 ---e---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
| ....+-+|.- .+--++=++|+.+++|+|-|. ++-+||.-+|+++
T Consensus 108 ~~ke~w~v~k~lr~h~~-----diydL~Ws~d~~~l~s~s~dn----------s~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRD-----DIYDLAWSPDSNFLVSGSVDN----------SVRLWDVHAGQLL 158 (434)
T ss_pred hCccceEEEEEeccccc-----chhhhhccCCCceeeeeeccc----------eEEEEEeccceeE
Confidence 1 2337777887 788888999999999999999 9999999999875
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.048 Score=32.50 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=33.3
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+.+..++..|.. .++.+...+++.++++++.|. +|.+||
T Consensus 2 ~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~d~----------~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTG-----PVTSVAFSPDGKYLASASDDG----------TIKLWD 40 (40)
T ss_pred cEEEEEEEecCC-----ceeEEEECCCCCEEEEecCCC----------eEEEcC
Confidence 456677878877 788999999999999999997 899986
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.035 Score=57.12 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=51.0
Q ss_pred ceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcC--CCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 332 NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS--DQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 332 sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~--Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+-+.++.|+++|++||.. |.++..|.+|.. -+|-+.+.. -...++|+|.|- +|++|||.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-----~~N~vrf~~~ds~h~v~s~ssDG----------~Vr~wD~Rs 103 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-----TTNGVRFISCDSPHGVISCSSDG----------TVRLWDIRS 103 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-----cccceEEecCCCCCeeEEeccCC----------eEEEEEeec
Confidence 344555699999999999 999999999998 788877666 578999999985 999999976
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.8 Score=42.75 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=124.9
Q ss_pred cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccC
Q 015220 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (411)
Q Consensus 114 sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~ 193 (411)
.+..-||-|.=|.+.-.+++...++.+.+.= . ++ -|+..+.+- - ..|+.||.+|.
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~-------------~g-RHFyGHg~f---s-----~dG~~LytTEn-- 70 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWA-P-------------PG-RHFYGHGVF---S-----PDGRLLYTTEN-- 70 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-C-------------CC-CEEecCEEE---c-----CCCCEEEEecc--
Confidence 4555667777777777777777666543311 1 11 222222221 0 14566999987
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEee-CceEEEEeccC--ceeEEEEe-CCEEEEEEec---CC------------
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDK--NVQEIKIS-PGIMLLIFTK---AS------------ 254 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~-~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~---t~------------ 254 (411)
||+.--|+|. |||.. +|..+-+.+.. .=.|+.+. ||..|++.+. ||
T Consensus 71 -----d~~~g~G~Ig----------Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 71 -----DYETGRGVIG----------VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred -----ccCCCcEEEE----------EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 6666555555 56666 78888888866 55788888 8867777653 44
Q ss_pred CceeeEEEEecCCcEEeEeeec-cccCCcceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec
Q 015220 255 GHVPLKILSIEDGTVLKSFNHL-LHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN 332 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~L-L~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s 332 (411)
-..+|..+|..||+++-...+. =.|+.-|.=|.+..++. ++.+--. |+... .|
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q---------g~~~~-------~~--------- 190 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ---------GDPGD-------AP--------- 190 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC---------CCCCc-------cC---------
Confidence 1335677888899988864420 23445566666666655 2222100 01000 00
Q ss_pred eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 333 QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|.... .+..++.-...-+..+.|.+ ++-+|++++||++|..-|. +-|.+-+||..||+++
T Consensus 191 PLva~~~~g~~~~~~~~p~~~~~~l~~--------Y~gSIa~~~~g~~ia~tsP---------rGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 191 PLVALHRRGGALRLLPAPEEQWRRLNG--------YIGSIAADRDGRLIAVTSP---------RGGRVAVWDAATGRLL 252 (305)
T ss_pred CeEEEEcCCCcceeccCChHHHHhhCC--------ceEEEEEeCCCCEEEEECC---------CCCEEEEEECCCCCEe
Confidence 223333 22223333333333445544 4559999999998866553 3479999999999886
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=95.02 E-value=2 Score=46.84 Aligned_cols=169 Identities=15% Similarity=0.196 Sum_probs=107.7
Q ss_pred EEeecCCCeEEEE-Ee-----eCceEEEEeccC-ceeEEEEeCCEE-EEEEecCCCceeeE-EEEecCCcEEeEeeeccc
Q 015220 208 LTYSAQDSIYKVF-DL-----KNYTMLYSISDK-NVQEIKISPGIM-LLIFTKASGHVPLK-ILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 208 Lt~~~~ds~ykVW-dL-----~~Ys~iysLs~~-~VqeIkISdG~~-Lai~q~t~~~ipiK-Il~I~tG~~L~t~~~LL~ 278 (411)
|.-+..+.-.-|| .. .+.+++-+=.|. |+.=.+++.+.+ ++.+-.|.. -|+- -+++.....+++..+-+.
T Consensus 151 l~~N~~qDl~ivWW~~~~~e~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~-dPl~~~Fs~~~~~qi~tVE~s~s 229 (545)
T PF11768_consen 151 LSVNSSQDLVIVWWPSAQDEVWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTEN-DPLDVEFSLNQPYQIHTVEQSIS 229 (545)
T ss_pred EeeccCCCEEEEEecCCCCCcCCCCCccccchhccEEEEEecCCcEEEEEEEEecC-CcEEEEccCCCCcEEEEEEEecC
Confidence 3334444455555 44 334443222222 666666664433 333333322 2222 244555555555444333
Q ss_pred cCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCceee
Q 015220 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGELVT 354 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Gel~~ 354 (411)
+++++- -.--||++..++..+|+-|..-.|+.+++.+-+ +.|+.+ .|++|.+||.+-. ++
T Consensus 230 ~~g~~~---------------~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t 293 (545)
T PF11768_consen 230 VKGEPS---------------ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-VT 293 (545)
T ss_pred CCCCce---------------eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-ee
Confidence 333321 234688888888999999999999999999977 667777 9999999999833 55
Q ss_pred eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++..+.. -.+-++..|||.+++.|+.- |-|.+||+-.+-
T Consensus 294 ~~~ka~~-----~P~~iaWHp~gai~~V~s~q----------GelQ~FD~ALsp 332 (545)
T PF11768_consen 294 LLAKAEF-----IPTLIAWHPDGAIFVVGSEQ----------GELQCFDMALSP 332 (545)
T ss_pred eeeeecc-----cceEEEEcCCCcEEEEEcCC----------ceEEEEEeecCc
Confidence 6666544 78889999999999999766 489999986543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.63 Score=51.10 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=117.6
Q ss_pred CCCeEEEeecC-CCeEEEEEeeCceEE--EEeccCceeEEEEeCCEEEEEEecCCC------------------------
Q 015220 203 VNGKVLTYSAQ-DSIYKVFDLKNYTML--YSISDKNVQEIKISPGIMLLIFTKASG------------------------ 255 (411)
Q Consensus 203 ~NGkiLt~~~~-ds~ykVWdL~~Ys~i--ysLs~~~VqeIkISdG~~Lai~q~t~~------------------------ 255 (411)
++|+-+.+.+. -=-+||||+.+-++= +-+..+.|.=+-+||.--=++..++.-
T Consensus 61 ~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~ 140 (703)
T KOG2321|consen 61 PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMK 140 (703)
T ss_pred CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCcccc
Confidence 45554443332 335689999997754 445566777667774332222222221
Q ss_pred -------------ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeec--CceeeEEEcccceEEE---eec
Q 015220 256 -------------HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTE---VSR 317 (411)
Q Consensus 256 -------------~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~---v~~ 317 (411)
-..+-=++|+.|.-|.+|. -...+++.+.+.++..||+-+ +.....||-++.++.- ++.
T Consensus 141 y~~~scDly~~gsg~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 141 YHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE---TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ccCCCccEEEeecCcceEEEEccccccccccc---cccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 1122335666666666633 234789999999999999985 5899999999987654 333
Q ss_pred cccCCCce-----EEEEeece--e-EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEE--cCCCCEEEEEec
Q 015220 318 TEFMTPSA-----FIFLYENQ--L-FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCK 385 (411)
Q Consensus 318 T~f~hpsA-----fifLy~sq--l-FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~I--s~Dqd~iiS~~~ 385 (411)
+.-.||.. +.++..+. | +..+ ++|.+-|||++ -.++. -.+|..-- -++.+.- +-+|+.++|.-+
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~---pi~~l~~~~~~~q~~v~S~Dk 293 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYEL---PIKKLDWQDTDQQNKVVSMDK 293 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCcc---ceeeecccccCCCceEEecch
Confidence 33344444 66666663 4 5555 99999999999 44433 23554411 2333332 235677877655
Q ss_pred CCCCCccccCCceEEEeeecceee
Q 015220 386 ADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 386 d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
. .++|||-.|||-
T Consensus 294 ~-----------~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 294 R-----------ILKIWDECTGKP 306 (703)
T ss_pred H-----------HhhhcccccCCc
Confidence 5 799999999984
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.094 Score=54.11 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=75.0
Q ss_pred cCCcceeee-----eecceeEEeecCceeeEEEcccc----e-----EEEeeccccCCCceEEEEe-----------ece
Q 015220 279 RNKKVDFIE-----QFNEKLLVKQENENLQILDVRNF----E-----LTEVSRTEFMTPSAFIFLY-----------ENQ 333 (411)
Q Consensus 279 h~K~I~FLE-----~~~ekllIKQe~~~LkI~dL~t~----e-----~~~v~~T~f~hpsAfifLy-----------~sq 333 (411)
.+||.+|+. .-++.+|.-++++-|.+|||-.. . ..++-.++-+..-..+..| .+.
T Consensus 45 tt~p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 45 TTKPLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred cCCchhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 344555543 34567788899999999998541 1 1110001100001111111 236
Q ss_pred eEEEE-ecCeEEEEecC-Cceeeeec--cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee-cce
Q 015220 334 LFLTF-RNRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL-MFV 407 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~-Gel~~s~e--~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i-~tG 407 (411)
+|++- ++.-|.+||.- |+|-+|+. ||+- --...-++..||||.-|+.|.|. +|+++|+ .+|
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~d--e~taAhsL~Fs~DGeqlfaGykr-----------cirvFdt~RpG 190 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQD--EYTAAHSLQFSPDGEQLFAGYKR-----------CIRVFDTSRPG 190 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHH--hhhhheeEEecCCCCeEeecccc-----------eEEEeeccCCC
Confidence 67777 99999999999 99999775 4443 22334578899999999999998 8999999 555
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=1 Score=48.90 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=109.5
Q ss_pred CCCeEEEEEeeC-ceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeee--e
Q 015220 213 QDSIYKVFDLKN-YTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--Q 288 (411)
Q Consensus 213 ~ds~ykVWdL~~-Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE--~ 288 (411)
..++|.+|.|.- |+++..++-++++. .| |-.||+.+-+.. .+-+++.--|++...+.-- .|--+|+.+- +
T Consensus 39 ~t~~~~~w~L~~~~s~~k~~~~~~~~~--~s~~t~~lvlgt~~g---~v~~ys~~~g~it~~~st~-~h~~~v~~~~~~~ 112 (541)
T KOG4547|consen 39 GTCTYTKWGLSADYSPMKWLSLEKAKK--ASLDTSMLVLGTPQG---SVLLYSVAGGEITAKLSTD-KHYGNVNEILDAQ 112 (541)
T ss_pred CcceeEEEEEEeccchHHHHhHHHHhh--ccCCceEEEeecCCc---cEEEEEecCCeEEEEEecC-CCCCcceeeeccc
Confidence 378999999875 88888887665543 34 666666665544 3556777788888874411 3334444332 2
Q ss_pred ecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeecee--EEEEecCeEEEEecC-CceeeeeccccccCCC
Q 015220 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL--FLTFRNRTVAVWNFR-GELVTSFEDHLLWHPD 365 (411)
Q Consensus 289 ~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sql--FlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~ 365 (411)
--..++=-..+-++-.|++.....++. -+..+.-+.-+-+++. -|..-+++|.+||.. +|++.+|+||-.
T Consensus 113 ~~~ciyS~~ad~~v~~~~~~~~~~~~~---~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s---- 185 (541)
T KOG4547|consen 113 RLGCIYSVGADLKVVYILEKEKVIIRI---WKEQKPLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGS---- 185 (541)
T ss_pred ccCceEecCCceeEEEEecccceeeee---eccCCCccceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCc----
Confidence 222333333666777899999999983 4445566666666633 333357899999999 999999999999
Q ss_pred CccceEEEcCC-----CCEEEEEecCC
Q 015220 366 CNTNNIYITSD-----QDLIISYCKAD 387 (411)
Q Consensus 366 c~~n~i~Is~D-----qd~iiS~~~d~ 387 (411)
.++++..+.+ |+...|.-+..
T Consensus 186 -~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 186 -PVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred -ceEEEEEEEeccccccceeeeccccc
Confidence 9999988888 77766665543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.15 Score=56.42 Aligned_cols=185 Identities=15% Similarity=0.162 Sum_probs=122.1
Q ss_pred CeEEEeecCCCeEEEEEeeC--ceEEEEeccC------------ceeEEEEeCC-EEE-EEEecCC---------Cceee
Q 015220 205 GKVLTYSAQDSIYKVFDLKN--YTMLYSISDK------------NVQEIKISPG-IML-LIFTKAS---------GHVPL 259 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~--Ys~iysLs~~------------~VqeIkISdG-~~L-ai~q~t~---------~~ipi 259 (411)
.-..+++++++.+|||+.-- ++.++-+++. +|....+|+- ++. ..-...+ ---|.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 45678899999999998743 4455555541 5555556622 221 1211111 22233
Q ss_pred EEEEecCCcEEe------EeeeccccCCcceeeeeecceeEEee-------cCceeeEEEcccceEEEeeccccCCCceE
Q 015220 260 KILSIEDGTVLK------SFNHLLHRNKKVDFIEQFNEKLLVKQ-------ENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 260 KIl~I~tG~~L~------t~~~LL~h~K~I~FLE~~~ekllIKQ-------e~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
-+..=.+...|- +..-|.||--+|..+.+++.+=||++ +..-|.+||..+=.... .+-+|.-.+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---~L~~HsLTV 575 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---ELEGHSLTV 575 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---eecccceEE
Confidence 333222221111 11137899999999999999999998 45569999988844444 455699888
Q ss_pred EEEeec---eeEEEE-ecCeEEEEecCCce-----eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 327 IFLYEN---QLFLTF-RNRTVAVWNFRGEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 327 ifLy~s---qlFlSf-sd~tI~iWn~~Gel-----~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
.-|+.| +.+||. +|+|+.+|+-.-++ ......|.- -+=.---+||+...+.+|-||
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtR-----IIWdcsW~pde~~FaTaSRDK---------- 640 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTR-----IIWDCSWSPDEKYFATASRDK---------- 640 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccce-----EEEEcccCcccceeEEecCCc----------
Confidence 888888 778888 99999999987322 223566655 112222489999999999999
Q ss_pred eEEEeeecce
Q 015220 398 KLFVSLLMFV 407 (411)
Q Consensus 398 tI~i~~i~tG 407 (411)
++++|-+..+
T Consensus 641 ~VkVW~~~~~ 650 (764)
T KOG1063|consen 641 KVKVWEEPDL 650 (764)
T ss_pred eEEEEeccCc
Confidence 9999988776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.088 Score=56.17 Aligned_cols=206 Identities=20% Similarity=0.239 Sum_probs=122.4
Q ss_pred ehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecC-------CCeEEEEEeEecCCCceeeeEeeehhhhhhCCC
Q 015220 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-------NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (411)
Q Consensus 108 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~-------n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~ 180 (411)
+++--..|--||||-.|++++|+||.. |-||.+=|=.+ -..... +|..+. .-|+|--.-++ -.++
T Consensus 144 lllgGrKGHlAa~Dw~t~~L~~Ei~v~--Etv~Dv~~LHneq~~AVAQK~y~y--vYD~~G-tElHClk~~~~---v~rL 215 (545)
T KOG1272|consen 144 LLLGGRKGHLAAFDWVTKKLHFEINVM--ETVRDVTFLHNEQFFAVAQKKYVY--VYDNNG-TELHCLKRHIR---VARL 215 (545)
T ss_pred EEecCCccceeeeecccceeeeeeehh--hhhhhhhhhcchHHHHhhhhceEE--EecCCC-cEEeehhhcCc---hhhh
Confidence 445567789999999999999999984 66666533221 122333 677777 67777322111 0000
Q ss_pred CCCCcceeecccCCCCeEEeeCCC-CeEEEeecC-CCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCcee
Q 015220 181 DAGFALFESESLKWPGFVEFDDVN-GKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVP 258 (411)
Q Consensus 181 ~~~~~LF~~~~l~~PgfvEFDd~N-GkiLt~~~~-ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ip 258 (411)
+==-..|-=.....-||.-|-|+. |+++..... -+...|-..++|.-+--+ -|..--
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~---------------------GhsnGt 274 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL---------------------GHSNGT 274 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEE---------------------cCCCce
Confidence 000002222334445555554443 333332221 222222222222221111 123334
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec--ee
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QL 334 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--ql 334 (411)
+.+|+=..-++|+. +|-|..+|..|++.+.+.+.+- -++++|||||++-.-.. |.+ +|--.--|..| .+
T Consensus 275 VSlWSP~skePLvK---iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~---t~~-tp~~a~~ls~Sqkgl 347 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVK---ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH---TYR-TPHPASNLSLSQKGL 347 (545)
T ss_pred EEecCCCCcchHHH---HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc---eee-cCCCccccccccccc
Confidence 68899999999998 9999999999999999986665 57899999999977333 554 24444556666 45
Q ss_pred EEEEecCeEEEEecC
Q 015220 335 FLTFRNRTVAVWNFR 349 (411)
Q Consensus 335 FlSfsd~tI~iWn~~ 349 (411)
++...-.-+.||.=.
T Consensus 348 LA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 348 LALSYGDHVQIWKDA 362 (545)
T ss_pred eeeecCCeeeeehhh
Confidence 666677789999633
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.21 Score=55.67 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=56.7
Q ss_pred ceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC--Cce
Q 015220 283 VDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR--GEL 352 (411)
Q Consensus 283 I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~--Gel 352 (411)
|+=+.--||+- ||--.++++-|||...|.... |+.+|+..+.+++++ +.|.|+ +|+.|-+|+.. |-|
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCccccc---ccccccceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence 33345555553 777788999999999999998 999999999999999 889999 99999999988 544
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.087 Score=54.85 Aligned_cols=145 Identities=13% Similarity=0.073 Sum_probs=95.8
Q ss_pred ceeEEEEeCCEE-EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccce
Q 015220 235 NVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFE 311 (411)
Q Consensus 235 ~VqeIkISdG~~-Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e 311 (411)
+...++.|+-+- ++-+..+.. -.|+|+-..+-.-.+.. -|++=.-.-+ --+++.+.+.||+...+.
T Consensus 75 ~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v~~~~~ai---------~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 75 RLVAVATSSKQRAVFDYRENPK--GAKLLDVSCVPKRPTAI---------SFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred eEEEEEeCCCceEEEEEecCCC--cceeeeEeecccCccee---------eeeeccceEEEEeecCCceeeeeecccccC
Confidence 555666663332 333333222 55666655554444332 2222222212 235678888899888755
Q ss_pred EEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCc-eee-eeccccccCCCCccceEEEcCCCCEEEEEec
Q 015220 312 LTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGE-LVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (411)
Q Consensus 312 ~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Ge-l~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~ 385 (411)
.. ..-+|=+-..-|+.+ +..+|- +|.+|||=.+.+- -+- =+-||.- .+.++.+.+++ +|+|++-
T Consensus 144 ~~----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-----FVS~isl~~~~-~LlS~sG 213 (390)
T KOG3914|consen 144 CE----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-----FVSTISLTDNY-LLLSGSG 213 (390)
T ss_pred cc----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-----heeeeeeccCc-eeeecCC
Confidence 55 345688888888887 667777 9999999887744 222 3457988 88999998766 4999999
Q ss_pred CCCCCccccCCceEEEeeecceeee
Q 015220 386 ADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 386 d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+ |+.+||+.+||++
T Consensus 214 D~----------tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 214 DK----------TLRLWDITSGKLL 228 (390)
T ss_pred CC----------cEEEEecccCCcc
Confidence 98 9999999999986
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.12 E-value=3.7 Score=44.87 Aligned_cols=182 Identities=14% Similarity=0.193 Sum_probs=117.6
Q ss_pred CCeEEEEEeeCceE-EEEeccCceeEEEEeCC---EEEEEEecCCCcee--eEEEEecCCcEEeEee-eccccCCcceee
Q 015220 214 DSIYKVFDLKNYTM-LYSISDKNVQEIKISPG---IMLLIFTKASGHVP--LKILSIEDGTVLKSFN-HLLHRNKKVDFI 286 (411)
Q Consensus 214 ds~ykVWdL~~Ys~-iysLs~~~VqeIkISdG---~~Lai~q~t~~~ip--iKIl~I~tG~~L~t~~-~LL~h~K~I~FL 286 (411)
.+...+|++.+.+- .-.|....|..+.+|+| .++|++-+...-.| ++||.+.-+....... -=+=..-.|++.
T Consensus 145 ~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~ 224 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMK 224 (566)
T ss_pred cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEE
Confidence 67788999988763 36677779999999988 88999999986665 6778777222221100 000011233332
Q ss_pred ee--ecceeEEee-----------cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE---ecCeEEEEecCC
Q 015220 287 EQ--FNEKLLVKQ-----------ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF---RNRTVAVWNFRG 350 (411)
Q Consensus 287 E~--~~ekllIKQ-----------e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf---sd~tI~iWn~~G 350 (411)
== -..=|+|+| +..+|-+++.. |+...|+=+.-+-=-.|.+...+.=|... +=-++.|+|++|
T Consensus 225 WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~ 303 (566)
T KOG2315|consen 225 WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG 303 (566)
T ss_pred eccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC
Confidence 11 111234554 45677777777 66666655533322333333333334433 778999999999
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++-.|-.- --|++|-+|-|.+|+-+.=+. --|.|-+||..+=||+
T Consensus 304 ~~v~df~eg-------pRN~~~fnp~g~ii~lAGFGN-------L~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 304 KPVFDFPEG-------PRNTAFFNPHGNIILLAGFGN-------LPGDMEVWDVPNRKLI 349 (566)
T ss_pred CEeEeCCCC-------CccceEECCCCCEEEEeecCC-------CCCceEEEeccchhhc
Confidence 999877432 458999999999998766542 2399999999998876
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.10 E-value=6.2 Score=38.41 Aligned_cols=131 Identities=19% Similarity=0.231 Sum_probs=83.5
Q ss_pred CeEEEEEeeCceEEEEe--c-cCcee---EEEEeC-----CEEEEEEecCC------Cc-eeeEEEEecCC----cEEeE
Q 015220 215 SIYKVFDLKNYTMLYSI--S-DKNVQ---EIKISP-----GIMLLIFTKAS------GH-VPLKILSIEDG----TVLKS 272 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysL--s-~~~Vq---eIkISd-----G~~Lai~q~t~------~~-ipiKIl~I~tG----~~L~t 272 (411)
+++++.|-.+++.+.++ . +|.+. .+++.+ -.+++++..-. .+ --|.++++.++ ..++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 67888888888877444 3 33444 444443 58888876633 12 66889999995 22222
Q ss_pred eeeccccCCcceeeeeecceeEEeecCceeeEEEcccce-EEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e-~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~ 349 (411)
. +--..+.+|..|..++++ ++..-|++|.+|++...+ +..+ ..+..|.....+... ...+.+ .-+.+-++.++
T Consensus 82 i-~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~~l~~~--~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 I-HSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSKTLLKK--AFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp E-EEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTSSEEEE--EEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred E-EEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcccchhh--heecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 1 123447889999999998 666667999999999999 5543 555566666666654 333333 55677777555
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.3 Score=43.75 Aligned_cols=175 Identities=15% Similarity=0.221 Sum_probs=110.8
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCce----EEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEec---CCc
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE---DGT 268 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys----~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~---tG~ 268 (411)
+..++++-+-+..++=|-|-.|||+++.. .-+-|- |++|-+|+.+ +|.=++.+-.+.. .+++|||- -.+
T Consensus 156 FDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG--SvRmFDLR~leHST 233 (364)
T KOG0290|consen 156 FDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADG--SVRMFDLRSLEHST 233 (364)
T ss_pred cccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCC--cEEEEEecccccce
Confidence 45667777778888889999999999972 234444 4499999998 3332222222322 34555553 333
Q ss_pred EEeE-------eeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEE
Q 015220 269 VLKS-------FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFL 336 (411)
Q Consensus 269 ~L~t-------~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFl 336 (411)
++.+ +--|--.+.+.++|+ ++++.+++++|+|++.-..-.. ++=+|..-+-.++-- .|--
T Consensus 234 IIYE~p~~~~pLlRLswnkqDpnymA------Tf~~dS~~V~iLDiR~P~tpva--~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 234 IIYEDPSPSTPLLRLSWNKQDPNYMA------TFAMDSNKVVILDIRVPCTPVA--RLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred EEecCCCCCCcceeeccCcCCchHHh------hhhcCCceEEEEEecCCCccee--hhhcCcccccceEecCCCCceeee
Confidence 3332 000222333444443 6788999999999998443331 777888888887733 4555
Q ss_pred EEecCeEEEEecCCceeeeeccc-cccCCCCccceEEEcCCC-CEEEE
Q 015220 337 TFRNRTVAVWNFRGELVTSFEDH-LLWHPDCNTNNIYITSDQ-DLIIS 382 (411)
Q Consensus 337 Sfsd~tI~iWn~~Gel~~s~e~H-~~~~~~c~~n~i~Is~Dq-d~iiS 382 (411)
.+-|-...+||++--+-.+.++- +.|+-.-++|+|.-++.| |-|..
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEE
Confidence 55888999999994333344443 346677799999999554 54433
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.80 E-value=7.8 Score=40.30 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=113.4
Q ss_pred EEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEE-eecCCCeE
Q 015220 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLT-YSAQDSIY 217 (411)
Q Consensus 139 IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt-~~~~ds~y 217 (411)
+|+.-++..++-|+++. ..-| -+.+=++..|++.+-.+.+-..- .=|--+.|- +|||+.- -+-=+|++
T Consensus 147 ~H~a~~tP~~~~l~v~D--LG~D-------ri~~y~~~dg~L~~~~~~~v~~G-~GPRHi~FH-pn~k~aY~v~EL~stV 215 (346)
T COG2706 147 VHSANFTPDGRYLVVPD--LGTD-------RIFLYDLDDGKLTPADPAEVKPG-AGPRHIVFH-PNGKYAYLVNELNSTV 215 (346)
T ss_pred cceeeeCCCCCEEEEee--cCCc-------eEEEEEcccCccccccccccCCC-CCcceEEEc-CCCcEEEEEeccCCEE
Confidence 66777777777777733 2222 12222444788766554433211 124457774 5666532 22338999
Q ss_pred EEEEeeC----ceEEEEec--------cCceeEEEEe-CCEEEEEEecCCCceeeEEEEec-CCcEEeEee-eccccCCc
Q 015220 218 KVFDLKN----YTMLYSIS--------DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFN-HLLHRNKK 282 (411)
Q Consensus 218 kVWdL~~----Ys~iysLs--------~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~-~LL~h~K~ 282 (411)
-||.+.+ ++.|+.|. +....+|.|| ||-||-++++.|+ .|.++.+. +|..|.... ...+-+-|
T Consensus 216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d--sI~~f~V~~~~g~L~~~~~~~teg~~P 293 (346)
T COG2706 216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD--SIAVFSVDPDGGKLELVGITPTEGQFP 293 (346)
T ss_pred EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC--eEEEEEEcCCCCEEEEEEEeccCCcCC
Confidence 9999998 45777776 2388999999 9999999999999 66777775 334344322 34444557
Q ss_pred ceeeeeecceeEEe--ecCceeeEE--EcccceEEEeec-cccCCCceEEEE
Q 015220 283 VDFIEQFNEKLLVK--QENENLQIL--DVRNFELTEVSR-TEFMTPSAFIFL 329 (411)
Q Consensus 283 I~FLE~~~ekllIK--Qe~~~LkI~--dL~t~e~~~v~~-T~f~hpsAfifL 329 (411)
=+|.-=..+.+||+ |++.+|.++ |=.||++.+... -.-..|-++.|+
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 77777777777765 688889887 456788887544 223345566654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.14 Score=34.27 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred cccCCCceEEEEeec---eeEEEE-ecCeEEEEe
Q 015220 318 TEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 318 T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn 347 (411)
+..+|...+..+..+ +.++|. .|++|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 777888888888877 778888 889999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=9.9 Score=39.46 Aligned_cols=161 Identities=9% Similarity=0.065 Sum_probs=85.9
Q ss_pred ceeEEEEe-CCEE-EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eEEee---cCceeeEEEc
Q 015220 235 NVQEIKIS-PGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQ---ENENLQILDV 307 (411)
Q Consensus 235 ~VqeIkIS-dG~~-Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQ---e~~~LkI~dL 307 (411)
....-+.| ||.. ++.....+...-|-++++.||+...=+. .......-..++|+ +++.+ ++..|-++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 56677888 7874 5543433334467889999998654211 11112223456664 43322 3456777799
Q ss_pred ccceEEEeeccccCCCceEEEEeeceeEEEE-ecC--eEEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEE
Q 015220 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNR--TVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 308 ~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~--tI~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
.+++..++......+-+....=..++++++- +.+ -|-+.++. |+.-+ ++++. + + ..+||||+.|+=
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~------~-~~~SPDG~~Ia~ 335 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N------N-SSVSTYKNYIVY 335 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c------C-ceECCCCCEEEE
Confidence 9998877633221111111111123554444 333 46666777 55422 33322 1 1 378999998865
Q ss_pred EecCCCCCccccCCceEEEeeecceee
Q 015220 383 YCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 383 ~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.+... +..+..+...|-+-|+.+|+.
T Consensus 336 ~~~~~-~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 336 SSRET-NNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred EEcCC-CcccCCCCcEEEEEECCCCCe
Confidence 55432 222222235777888888864
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=93.61 E-value=6.3 Score=36.86 Aligned_cols=236 Identities=14% Similarity=0.183 Sum_probs=122.9
Q ss_pred cceehhhhccccceeeec-ccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCR-ETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~-~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 183 (411)
++.+++=+..|+ -.|+. ...+..=.+...+ |..|-.-+.=+.++++| | ..|..... ..+.......
T Consensus 7 ~~~L~vGt~~Gl-~~~~~~~~~~~~~i~~~~~---I~ql~vl~~~~~llvLs----d--~~l~~~~L--~~l~~~~~~~- 73 (275)
T PF00780_consen 7 GDRLLVGTEDGL-YVYDLSDPSKPTRILKLSS---ITQLSVLPELNLLLVLS----D--GQLYVYDL--DSLEPVSTSA- 73 (275)
T ss_pred CCEEEEEECCCE-EEEEecCCccceeEeecce---EEEEEEecccCEEEEEc----C--CccEEEEc--hhhccccccc-
Confidence 455555577785 55554 2222222333333 77777777777777765 2 34444333 3332222111
Q ss_pred Ccceee--------cccCCCCeEE-eeCCCCeEEEeecCCCeEEEEEeeC----c-eEEEEec-cCceeEEEEeCCEEEE
Q 015220 184 FALFES--------ESLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKN----Y-TMLYSIS-DKNVQEIKISPGIMLL 248 (411)
Q Consensus 184 ~~LF~~--------~~l~~PgfvE-FDd~NGkiLt~~~~ds~ykVWdL~~----Y-s~iysLs-~~~VqeIkISdG~~La 248 (411)
...+.+ ...+.-.|+. -...++......+..+.+.||.... + +.+.+++ .+.++.+...++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v 153 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICV 153 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEE
Confidence 001111 1122222222 2234444444456666999999876 3 5666665 5688888888555433
Q ss_pred EEecCCCceeeEEEEecCCcEEeEe---------eeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccc
Q 015220 249 IFTKASGHVPLKILSIEDGTVLKSF---------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE 319 (411)
Q Consensus 249 i~q~t~~~ipiKIl~I~tG~~L~t~---------~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~ 319 (411)
-. .--.-++|+.||+...-+ .......+|+..+.+..+..|+-- +++=++==..|++.+ ..+.
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r-~~~i 225 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSR-KSTI 225 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCc-ccEE
Confidence 33 333667788877664421 112233456766666633333321 123333223444443 2222
Q ss_pred cCCCceEEEEeeceeEEEEecCeEEEEecC-Cceeeeeccccc
Q 015220 320 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLL 361 (411)
Q Consensus 320 f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~ 361 (411)
......-.+.+....++.+.++.|+||++. |+|+-+++.+..
T Consensus 226 ~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 226 QWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred EcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEECCCE
Confidence 222233334445677778888999999999 999998876544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.97 Score=47.35 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=81.6
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE--eecCceeeEEEccc---ceEEEeec
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRN---FELTEVSR 317 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t---~e~~~v~~ 317 (411)
+.--..+.+.+.....+++|+.+.|...- .|||-+-+-=+.+++|..+| +-.+++|+|-..-. .+.++.
T Consensus 118 ~~~sv~v~dkagD~~~~di~s~~~~~~~~----~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-- 191 (390)
T KOG3914|consen 118 EDTSVLVADKAGDVYSFDILSADSGRCEP----ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-- 191 (390)
T ss_pred ccceEEEEeecCCceeeeeecccccCcch----hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--
Confidence 44445677888888999999999866554 58998999889999888744 45889999887655 444443
Q ss_pred cccCCCceE--EEEeeceeEEEE-ecCeEEEEecC-Cceeeeeccc
Q 015220 318 TEFMTPSAF--IFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 318 T~f~hpsAf--ifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H 359 (411)
||.+-| ++|+-+++++|. .|+|+++||.. |..+.+|+=.
T Consensus 192 ---GH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 192 ---GHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred ---ccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccchh
Confidence 344333 467888999999 99999999999 9988776543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=93.04 E-value=7.4 Score=36.03 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=105.6
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEec-----cCceeEEEEe-CCEEEEEEecCCCcee---eEEEE
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS-----DKNVQEIKIS-PGIMLLIFTKASGHVP---LKILS 263 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs-----~~~VqeIkIS-dG~~Lai~q~t~~~ip---iKIl~ 263 (411)
|.=+-++..+|+.++... ....++|+++.+ .+..+. ....-++.+. +|.+.+.......... =+||.
T Consensus 42 ~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 666667766788888543 445566988864 566662 2367788998 8886666554443333 36777
Q ss_pred ecCC-cEEeEeeeccccCCcceeeeeecce--eEE-eecCceeeEEEccc--ceEE---Eee--ccccCCCceEEEEeec
Q 015220 264 IEDG-TVLKSFNHLLHRNKKVDFIEQFNEK--LLV-KQENENLQILDVRN--FELT---EVS--RTEFMTPSAFIFLYEN 332 (411)
Q Consensus 264 I~tG-~~L~t~~~LL~h~K~I~FLE~~~ek--llI-KQe~~~LkI~dL~t--~e~~---~v~--~T~f~hpsAfifLy~s 332 (411)
+..+ +...-.. .-.-.+=|..++++ +++ -+..+.|..+|+.. ++.. .+. ....+.|..+..=..-
T Consensus 120 ~~~~~~~~~~~~----~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 120 IDPDGKVTVVAD----GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EETTSEEEEEEE----EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred ECCCCeEEEEec----CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 7766 3322221 22334567788776 443 45788899999963 2121 111 1111234555544455
Q ss_pred eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEE-cCCCCEEEEE
Q 015220 333 QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISY 383 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~I-s~Dqd~iiS~ 383 (411)
.||++. ..+.|.++|++|+++...+--.. ...++.. -+|++.|+--
T Consensus 196 ~l~va~~~~~~I~~~~p~G~~~~~i~~p~~-----~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPDGKLLREIELPVP-----RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -EEEEEETTTEEEEEETTSCEEEEEE-SSS-----SEEEEEEESTTSSEEEEE
T ss_pred CEEEEEcCCCEEEEECCCccEEEEEcCCCC-----CEEEEEEECCCCCEEEEE
Confidence 888887 79999999999999887654422 3445555 6777766543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.1 Score=52.62 Aligned_cols=243 Identities=14% Similarity=0.132 Sum_probs=140.4
Q ss_pred cccceEEEeec--c-ceehhhhccccceeeecc-------cccEEEEEe--CCCCceEEEEEeecCCCeEEEEEeEecCC
Q 015220 94 KRSKIIEIVAA--R-DIVFALAQSGVCAAFCRE-------TNQRICFLN--VTADEVIRSLFYNKNNDSLITVSVYASDN 161 (411)
Q Consensus 94 ~RS~V~EIv~a--~-dii~~L~~sG~c~af~~~-------t~~~ic~lN--~s~~evIrsifyN~~n~slI~vSv~~sd~ 161 (411)
.++.|..+... + ++.+-...-|+..+|+.. +.+-.|..- .+.-++|-.++ +++++-+ | .+|+
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~---~~~~~Av-~--t~DG 1120 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG---NGDQFAV-S--TKDG 1120 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc---CCCeEEE-E--cCCC
Confidence 56777777766 3 577888888999999863 222222222 13333444433 3344443 1 4444
Q ss_pred Ccee------eeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-
Q 015220 162 FSSL------RCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK- 234 (411)
Q Consensus 162 ~s~L------~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~- 234 (411)
+=.+ .-+...+++.|.-+.....+ -++... | .+++.. -.|+|.-+.+-+-.||.+...-+..+..+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~---vv~m~a--~-~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGV---VVSMHA--F-TAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCc---eEEeec--c-cccccc-eeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 2111 11111122222212111111 011111 1 123333 48889999999999999998877666644
Q ss_pred ---ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee-----E-Eee-cCceeeE
Q 015220 235 ---NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-----L-VKQ-ENENLQI 304 (411)
Q Consensus 235 ---~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-----l-IKQ-e~~~LkI 304 (411)
-|.++.++++.=.|+.--+... +-+|||-=+.+..+..+ ++..+|.=++..+=+- . --| .++.+-+
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~--l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQ--LVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCce--EEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 8999999955544444444444 99999999999988665 5557776666654332 2 223 6788999
Q ss_pred EEcccceEEEeeccc-------cCCCc---------eEEEEeec---eeEEEE-ecCeEEEEecC-Ccee
Q 015220 305 LDVRNFELTEVSRTE-------FMTPS---------AFIFLYEN---QLFLTF-RNRTVAVWNFR-GELV 353 (411)
Q Consensus 305 ~dL~t~e~~~v~~T~-------f~hps---------AfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~ 353 (411)
||+.+|.+..|-.+- +..|+ +.++.... .+.+|+ +|.+||.||.. .+..
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999999887732222 22333 22222222 556777 99999999987 5444
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.88 E-value=14 Score=38.78 Aligned_cols=230 Identities=14% Similarity=0.139 Sum_probs=121.6
Q ss_pred ceehhhhccccceeeecccccEEEEEeCCCCc-----eEEE-EEeecCCCeEEEEEeEecCC-----CceeeeEeeehhh
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADE-----VIRS-LFYNKNNDSLITVSVYASDN-----FSSLRCRSTRIEY 174 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e-----vIrs-ifyN~~n~slI~vSv~~sd~-----~s~L~cr~~~~~~ 174 (411)
+.|++-+..|...|+|..||+.+-..+..+.. +--+ ++++ +.+++ .....+. ...|.|- +
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~---~~v~v-g~~~~~~~~~~~~g~v~al-----D 181 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK---KLVII-GSSGAEFFACGVRGALRAY-----D 181 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC---CEEEE-eccccccccCCCCcEEEEE-----E
Confidence 88888889999999999999999887765542 1111 2332 23333 2111111 1222222 2
Q ss_pred hhhCCCCCCCcceeecc-----------------------cCCCCeEEeeCCCCeEEEeecCC-----------------
Q 015220 175 IRRGKPDAGFALFESES-----------------------LKWPGFVEFDDVNGKVLTYSAQD----------------- 214 (411)
Q Consensus 175 i~~gk~~~~~~LF~~~~-----------------------l~~PgfvEFDd~NGkiLt~~~~d----------------- 214 (411)
..-||. +..... -.|. -.-+|..+|.+++...+.
T Consensus 182 ~~TG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~-~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~ 255 (488)
T cd00216 182 VETGKL-----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA-SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT 255 (488)
T ss_pred CCCCce-----eeEeeccCCCcCCCCCCCCCcceecCCCCCccC-CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce
Confidence 222222 222111 0111 145666778777765432
Q ss_pred CeEEEEEeeCceEEEEe--ccC-----------ceeEEEEeCCE-EEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 215 SIYKVFDLKNYTMLYSI--SDK-----------NVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysL--s~~-----------~VqeIkISdG~-~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
+.+--.|++|.+.+-+. ..+ .+.++..-+|. .-+++..+.. -.+-.+|++||+++.+......
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-G~l~ald~~tG~~~W~~~~~~~-- 332 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-GFFYVLDRTTGKLISARPEVEQ-- 332 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC-ceEEEEECCCCcEeeEeEeecc--
Confidence 36777888888887443 322 11222211221 1122222221 2267899999999998553201
Q ss_pred CcceeeeeecceeEE------------------eecCceeeEEEcccceEEEeeccc-------cCCCc--eEEEEeece
Q 015220 281 KKVDFIEQFNEKLLV------------------KQENENLQILDVRNFELTEVSRTE-------FMTPS--AFIFLYENQ 333 (411)
Q Consensus 281 K~I~FLE~~~ekllI------------------KQe~~~LkI~dL~t~e~~~v~~T~-------f~hps--AfifLy~sq 333 (411)
. +...++.+++ +..+..|-.+|+.+|+..=--+.. .+.|. .-..+....
T Consensus 333 -~---~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 408 (488)
T cd00216 333 -P---MAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL 408 (488)
T ss_pred -c---cccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence 1 2223344444 334568999999998865411111 00111 112233345
Q ss_pred eEEEEecCeEEEEecC-Cceeeeec
Q 015220 334 LFLTFRNRTVAVWNFR-GELVTSFE 357 (411)
Q Consensus 334 lFlSfsd~tI~iWn~~-Gel~~s~e 357 (411)
+|+.-.|+.+...|.+ |+++-+++
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEE
Confidence 5555589999999998 99887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.75 E-value=15 Score=38.65 Aligned_cols=138 Identities=12% Similarity=0.148 Sum_probs=88.7
Q ss_pred eCCCCe---EEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEec--------------CCCceeeEEEE
Q 015220 201 DDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK--------------ASGHVPLKILS 263 (411)
Q Consensus 201 Dd~NGk---iLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~--------------t~~~ipiKIl~ 263 (411)
.+.+|. ++.....++.+-..|.+|.+.+.+.... ...+..+++.+.+-... +...-.+--+|
T Consensus 294 ~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 294 KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 345665 4444556888999999999999765421 12344556655443211 12234577889
Q ss_pred ecCCcEEeEeeeccccCC-----cc--eeeeeecceeEEeecCceeeEEEcccceEEE---eeccccCCCceEEEEeece
Q 015220 264 IEDGTVLKSFNHLLHRNK-----KV--DFIEQFNEKLLVKQENENLQILDVRNFELTE---VSRTEFMTPSAFIFLYENQ 333 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K-----~I--~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~---v~~T~f~hpsAfifLy~sq 333 (411)
+.||+.+.++....++.. +. --+.+.++.+++-..+..|-.+|..||+..- ++......| +++++..+
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~g~ 450 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVNGK 450 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeCCE
Confidence 999999999775422211 11 1356778888998899999999999998764 433443333 44555668
Q ss_pred eEEEEecC
Q 015220 334 LFLTFRNR 341 (411)
Q Consensus 334 lFlSfsd~ 341 (411)
+|+...++
T Consensus 451 ~yv~~~~g 458 (488)
T cd00216 451 QYVGVMVG 458 (488)
T ss_pred EEEEEEec
Confidence 88887655
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.42 E-value=3.4 Score=45.12 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceE--EEEec------------------cCc--eeEEEEeCCEEEEEEecCCC
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------------------DKN--VQEIKISPGIMLLIFTKASG 255 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~--iysLs------------------~~~--VqeIkISdG~~Lai~q~t~~ 255 (411)
++|+.-+.-.|+-+..+|.+=+||++.... .-.|+ ..+ +..... ||.+.-- .-..-
T Consensus 248 ~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss-DG~i~~W-~~~~l 325 (555)
T KOG1587|consen 248 LKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS-DGSICSW-DTDML 325 (555)
T ss_pred EEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec-CCcEeee-ecccc
Confidence 468888888899999999999999998554 22222 112 222211 6654222 22222
Q ss_pred ceeeEEEEecC--------CcEEeEeeeccccCCcceeeeeecceeEEeecCc----------e-eeEEEcccceEEEee
Q 015220 256 HVPLKILSIED--------GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE----------N-LQILDVRNFELTEVS 316 (411)
Q Consensus 256 ~ipiKIl~I~t--------G~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~----------~-LkI~dL~t~e~~~v~ 316 (411)
..|+.+.-+++ .+....+..-++..-|..||.=..++.+.+=-.+ + +.-+.++-|-.+.|.
T Consensus 326 ~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~ 405 (555)
T KOG1587|consen 326 SLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS 405 (555)
T ss_pred ccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee
Confidence 22332222221 1222233445677778888888888887771110 0 112222223333333
Q ss_pred ccccCCCceEEEEeeceeEEEEecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcccc
Q 015220 317 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (411)
Q Consensus 317 ~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~ 394 (411)
..-| ...+|+|..|-+++||.-. --++..++.|.. .+..++=||.-=.+|..-.+
T Consensus 406 ~nPF----------~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-----~v~~vaWSptrpavF~~~d~-------- 462 (555)
T KOG1587|consen 406 RNPF----------YPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-----YVTDVAWSPTRPAVFATVDG-------- 462 (555)
T ss_pred cCCC----------ccceeeeeccceeEeccccCCCCcchhhhhccc-----eeeeeEEcCcCceEEEEEcC--------
Confidence 2222 1278999999999999987 458899999888 57788888887666643332
Q ss_pred CCceEEEeeecc
Q 015220 395 GNGKLFVSLLMF 406 (411)
Q Consensus 395 ~~gtI~i~~i~t 406 (411)
+|.|+||||.-
T Consensus 463 -~G~l~iWDLl~ 473 (555)
T KOG1587|consen 463 -DGNLDIWDLLQ 473 (555)
T ss_pred -CCceehhhhhc
Confidence 48999999863
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.23 E-value=8.7 Score=39.87 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=109.1
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC----ceeEEEEe-----CCEEEEEEecCCCceeeEEEEec-----C-
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS-----PGIMLLIFTKASGHVPLKILSIE-----D- 266 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~----~VqeIkIS-----dG~~Lai~q~t~~~ipiKIl~I~-----t- 266 (411)
|..||-++.|+.|.++||||++.-+-=..+|++ +=+-+||. =|+++|.-.--. -++||-=+ .
T Consensus 22 D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr---tv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 22 DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR---TVSIWEEQEKSEEAH 98 (361)
T ss_pred cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC---ceeeeeecccccccc
Confidence 357999999999999999999876666666643 33334443 356655533222 24555431 1
Q ss_pred CcEEeEeeeccccCCcceeeeeecc--ee--EEeecCceeeEEEccc----------ceEEEeeccccCCCceEEEEeec
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFNE--KL--LVKQENENLQILDVRN----------FELTEVSRTEFMTPSAFIFLYEN 332 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~e--kl--lIKQe~~~LkI~dL~t----------~e~~~v~~T~f~hpsAfifLy~s 332 (411)
|..-..-+.|.-.+..|.=++--+- ++ --.+.+.-|+||+... .|+..|+.+.-.+..---||.-+
T Consensus 99 ~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn 178 (361)
T KOG2445|consen 99 GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWN 178 (361)
T ss_pred cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeec
Confidence 1111111112233333332332222 22 2345777888887654 56665655544333333344433
Q ss_pred ------eeEEEEecC------eEEEEecC--Cc---eeeeeccccccCCCCccceEEEcC----CCCEEEEEecCCCCCc
Q 015220 333 ------QLFLTFRNR------TVAVWNFR--GE---LVTSFEDHLLWHPDCNTNNIYITS----DQDLIISYCKADSDDP 391 (411)
Q Consensus 333 ------qlFlSfsd~------tI~iWn~~--Ge---l~~s~e~H~~~~~~c~~n~i~Is~----Dqd~iiS~~~d~~~~~ 391 (411)
++++.++|. .+.||... |. -+.+|.||-- -+..|.-.| +=.+|..+|+|
T Consensus 179 ~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-----pI~di~wAPn~Gr~y~~lAvA~kD----- 248 (361)
T KOG2445|consen 179 PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-----PIRDISWAPNIGRSYHLLAVATKD----- 248 (361)
T ss_pred cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-----cceeeeeccccCCceeeEEEeecC-----
Confidence 889999888 99999998 42 3447777754 455554444 56789999999
Q ss_pred cccCCceEEEeeecc
Q 015220 392 LAEGNGKLFVSLLMF 406 (411)
Q Consensus 392 ~~~~~gtI~i~~i~t 406 (411)
| |.||++++
T Consensus 249 -----g-v~I~~v~~ 257 (361)
T KOG2445|consen 249 -----G-VRIFKVKV 257 (361)
T ss_pred -----c-EEEEEEee
Confidence 3 88888874
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.7 Score=43.83 Aligned_cols=247 Identities=13% Similarity=0.112 Sum_probs=145.8
Q ss_pred EeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeee---hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeE
Q 015220 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR---IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (411)
Q Consensus 131 lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~---~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGki 207 (411)
|-..+++.||.+-++-+-.-|-|.| ||. ..|.-.+. ..++...-..-..|.. ++.-.||-| |.+
T Consensus 6 idt~H~D~IHda~lDyygkrlATcs---SD~--tVkIf~v~~n~~s~ll~~L~Gh~GPVw-qv~wahPk~-------G~i 72 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCS---SDG--TVKIFEVRNNGQSKLLAELTGHSGPVW-KVAWAHPKF-------GTI 72 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeec---CCc--cEEEEEEcCCCCceeeeEecCCCCCee-EEeeccccc-------CcE
Confidence 3345667777776666666666644 232 12211111 0011110001112332 356678876 889
Q ss_pred EEeecCCCeEEEEEeeCce--EEEEeccCceeEEEEe--CCEEEEEEecCCCceeeEEEEecCC-cEEeEeeeccccCCc
Q 015220 208 LTYSAQDSIYKVFDLKNYT--MLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHRNKK 282 (411)
Q Consensus 208 Lt~~~~ds~ykVWdL~~Ys--~iysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG-~~L~t~~~LL~h~K~ 282 (411)
|+++.=|+-..||..++.. .+|+-.+++.+--.|+ |...=++.-+..+--.|.|++..+. .-.-+ ++...|.--
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~-ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS-KIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch-hhhhccccc
Confidence 9999999999999999964 6677777755555555 5544444455556666777777654 11111 112233333
Q ss_pred ceeeeeecc---e------------eEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeec-------eeEEEE-
Q 015220 283 VDFIEQFNE---K------------LLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-------QLFLTF- 338 (411)
Q Consensus 283 I~FLE~~~e---k------------llIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-------qlFlSf- 338 (411)
|+.+-=.+. + -|+-- -++.+|||+.-++ .+++..|+=+|..++-=+|-- -..+|.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 333322222 1 12222 4678999999998 777788888999888665522 335666
Q ss_pred ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 339 RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 339 sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+|+++-||.-+.|. -.-+.-++=.-.|..-.+--|..|-+|.-++-|. .+.+|-
T Consensus 231 qDg~viIwt~~~e~-e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN----------kvtlwk 284 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEY-EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN----------KVTLWK 284 (299)
T ss_pred CCCcEEEEEecCcc-CcccccccccCCcceEEEEEeccccEEEEecCCc----------EEEEEE
Confidence 99999999998441 1111222222345677888899999998888887 777773
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.03 E-value=4.7 Score=44.47 Aligned_cols=149 Identities=16% Similarity=0.160 Sum_probs=90.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeC---------ceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~---------Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
.++|--|+..++|+.+|+|+=.. -+.+|..- +-+=..|-.+ .||...-.. .-+. -+-=|..|||-+|
T Consensus 113 ~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL-~~n~-k~i~WkAHDGiiL 190 (737)
T KOG1524|consen 113 SPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPL-AANS-KIIRWRAHDGLVL 190 (737)
T ss_pred CCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeec-cccc-ceeEEeccCcEEE
Confidence 46888999999999999998544 34555554 2244445555 444322222 2222 2234888999888
Q ss_pred eEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEEecCeEEEE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTFRNRTVAVW 346 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSfsd~tI~iW 346 (411)
.- -- ..-.=+|.+ |+-+.||||-.-.-++. --.|-.+...++.+ ++|+.+|=+|.|+=
T Consensus 191 ~~---~W-----------~~~s~lI~sgGED~kfKvWD~~G~~Lf~----S~~~ey~ITSva~npd~~~~v~S~nt~R~~ 252 (737)
T KOG1524|consen 191 SL---SW-----------STQSNIIASGGEDFRFKIWDAQGANLFT----SAAEEYAITSVAFNPEKDYLLWSYNTARFS 252 (737)
T ss_pred Ee---ec-----------CccccceeecCCceeEEeecccCccccc----CChhccceeeeeeccccceeeeeeeeeeec
Confidence 72 11 111124555 55588999988777764 22244555555544 89999999999976
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
.++ |... ++.-|+||--+.+||..
T Consensus 253 ~p~~GSif----------------nlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 253 SPRVGSIF----------------NLSWSADGTQATCGTST 277 (737)
T ss_pred CCCccceE----------------EEEEcCCCceeeccccC
Confidence 666 6543 44455666555555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.22 Score=55.46 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=45.1
Q ss_pred ceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 332 NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 332 sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
+|+.+. -++.+-++|.+ |.++.+|.+|.. .++.|+-|.||+...||++|+.
T Consensus 25 sqL~lA-Ag~rlliyD~ndG~llqtLKgHKD-----tVycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 25 TQLILA-AGSRLLVYDTSDGTLLQPLKGHKD-----TVYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred ceEEEe-cCCEEEEEeCCCcccccccccccc-----eEEEEEEccCCceeccCCCcee
Confidence 355554 56678899999 999999999999 9999999999999999999993
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=91.92 E-value=14 Score=36.39 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=73.8
Q ss_pred CceeEEEEe-CCEEEEEEecCCCceeeEEEEe--cCCcEE----eEeeecc--ccCCcceeeeee--cceeEEeecCcee
Q 015220 234 KNVQEIKIS-PGIMLLIFTKASGHVPLKILSI--EDGTVL----KSFNHLL--HRNKKVDFIEQF--NEKLLVKQENENL 302 (411)
Q Consensus 234 ~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I--~tG~~L----~t~~~LL--~h~K~I~FLE~~--~ekllIKQe~~~L 302 (411)
.+.-.|+.. +|.|++...+.+ -+-++++ .+..+- ..+..-+ .+++.++=|.-. +..+++.+|..+.
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~---~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~ 141 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQ---RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPK 141 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTT---EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSE
T ss_pred CCceeEEEECCCEEEEEEcCCC---cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCCh
Confidence 366677776 787776654444 2334444 222211 1222222 367778888864 4678999999999
Q ss_pred eEEEccc---ceEEEee--------ccccCCCceEEEEeec-eeEE-EEecCeEEEEecCCceee--eecc--ccccCCC
Q 015220 303 QILDVRN---FELTEVS--------RTEFMTPSAFIFLYEN-QLFL-TFRNRTVAVWNFRGELVT--SFED--HLLWHPD 365 (411)
Q Consensus 303 kI~dL~t---~e~~~v~--------~T~f~hpsAfifLy~s-qlFl-Sfsd~tI~iWn~~Gel~~--s~e~--H~~~~~~ 365 (411)
+||.+.. +....+. .--...||+..+=..+ ++|+ |-.++.|-..|..|.++. +|.. |-++..-
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDI 221 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS--
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccccc
Confidence 9999875 2222211 1123367887775555 4433 337889999999999877 4443 3222222
Q ss_pred CccceEEEcCCCCEEEEE
Q 015220 366 CNTNNIYITSDQDLIISY 383 (411)
Q Consensus 366 c~~n~i~Is~Dqd~iiS~ 383 (411)
.---=|++.+||.+-|+.
T Consensus 222 ~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -SEEEEEE-TT--EEEEE
T ss_pred CCccEEEECCCCCEEEEc
Confidence 344568889999888874
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=9.2 Score=43.55 Aligned_cols=178 Identities=12% Similarity=0.102 Sum_probs=95.5
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCE-EEEEEecCCCceeeEEEEecCCcE
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~-~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
.-.-|-+|++|. .-+.+++++..+++-+||+.+=+.||.+- |.+--.+||- ++-+ .-.++..--.|.-
T Consensus 344 ~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~---v~~~n~~~~~~n~~v-------~itav~~~~~gs~ 412 (792)
T KOG1963|consen 344 PQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQ---VCDENYSDGDVNIQV-------GITAVARSRFGSW 412 (792)
T ss_pred ccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEE---EEeecccCCcceeEE-------eeeeehhhccceE
Confidence 444566788887 66788999999999999999988776653 1111111111 0000 0001111111333
Q ss_pred EeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccC--CCceEEEEeec-----eeEEEE-ecC
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM--TPSAFIFLYEN-----QLFLTF-RNR 341 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~--hpsAfifLy~s-----qlFlSf-sd~ 341 (411)
+.| +|+-+|+.-.+-+-+.||.|=-...+..-+..|.-. |-.+|++.... .-++|. .|+
T Consensus 413 maT-------------~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg 479 (792)
T KOG1963|consen 413 MAT-------------LEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG 479 (792)
T ss_pred EEE-------------eeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence 333 233333333333333344443222222111222222 33344433322 357777 899
Q ss_pred eEEEEecCCc---------eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 342 TVAVWNFRGE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 342 tI~iWn~~Ge---------l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.++||-+.++ =.+-.-+|+ -+..+++..-|.||-+|..+-.+ +|-|||-.|
T Consensus 480 ~~KiW~~~~~~n~~k~~s~W~c~~i~sy---~k~~i~a~~fs~dGslla~s~~~-----------~Itiwd~~~ 539 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSSNWTCKAIGSY---HKTPITALCFSQDGSLLAVSFDD-----------TITIWDYDT 539 (792)
T ss_pred eEEEEEEecccccCcCccceEEeeeecc---ccCcccchhhcCCCcEEEEecCC-----------EEEEecCCC
Confidence 9999999533 122233331 23488999999999777766555 899999876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=18 Score=37.53 Aligned_cols=172 Identities=9% Similarity=0.056 Sum_probs=93.3
Q ss_pred CCCe-EEEeec---CCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGK-VLTYSA---QDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGk-iLt~~~---~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+ ++.|.. .+..+-++|+.+.+.-.-.. ...+.....| ||-.|++........-|-++++.+|+... +.
T Consensus 197 pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-- 273 (419)
T PRK04043 197 NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-- 273 (419)
T ss_pred CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cc--
Confidence 5565 344422 24567788888876322212 2345567788 88666666655667778888998887433 11
Q ss_pred cccCCcceeeeeecce--eEEee---cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ec------C--e
Q 015220 277 LHRNKKVDFIEQFNEK--LLVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN------R--T 342 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek--llIKQ---e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd------~--t 342 (411)
.....-..-.-++|+ +.+-+ +...|-++|+.+|+..++. ..+.......-..+.+.++- .+ + .
T Consensus 274 -~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~ 350 (419)
T PRK04043 274 -NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--FHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFN 350 (419)
T ss_pred -cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--cCCCcCceECCCCCEEEEEEcCCCcccCCCCcE
Confidence 111101112344444 54443 3346888899999987753 22221110111122343333 22 2 5
Q ss_pred EEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 343 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 343 I~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
|.+.|+.|.-.+.|..+. .......||||+.|+-...+
T Consensus 351 I~v~d~~~g~~~~LT~~~------~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 351 LYLISTNSDYIRRLTANG------VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred EEEEECCCCCeEECCCCC------CcCCeEECCCCCEEEEEEcc
Confidence 666677744456666542 12357899999987655443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.70 E-value=6.1 Score=40.99 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=38.3
Q ss_pred cCeEEEEecC---Cceeeeec-cccccCCCCccceEEEcCCCC-EEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR---GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~---Gel~~s~e-~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+..-+||-++ +.+++.++ .|. +++|.+|.|++ +|+.-+.. +|++.++|..|||.+
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~~---------~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSAG---------DGTLDVYDAATGKLV 325 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEETT---------TTEEEEEETTT--EE
T ss_pred CCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcCC---------CCeEEEEeCcCCcEE
Confidence 4456777666 77888777 343 57999999999 55444443 369999999999975
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.44 E-value=1 Score=49.70 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=101.0
Q ss_pred eeEEEEec-------CCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCC----ceE
Q 015220 258 PLKILSIE-------DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTP----SAF 326 (411)
Q Consensus 258 piKIl~I~-------tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hp----sAf 326 (411)
-+|+|+|. |..+..| ...|+|||+-|-...+...|++-+.-|-+||---|.+.- .-++... --+
T Consensus 758 TVKLWSik~EgD~~~tsaCQfT---Y~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~La--q~~dapk~~a~~~i 832 (1034)
T KOG4190|consen 758 TVKLWSIKPEGDEIGTSACQFT---YQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLA--QMEDAPKEGAGGNI 832 (1034)
T ss_pred eEEEEEeccccCccccceeeeE---hhhccCcccceeeeeccceeeeccCcceeecccccchhH--hhhcCcccCCCcee
Confidence 47999997 3334455 578999999999999999999999999999977666543 1122111 123
Q ss_pred EEEee--ceeEEEE--ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEE
Q 015220 327 IFLYE--NQLFLTF--RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFV 401 (411)
Q Consensus 327 ifLy~--sqlFlSf--sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i 401 (411)
-+|-. +.++..+ -..||.+.|-+ +|-++.+.---.--||--+..+++-+-|.-+.. +..+|+|-+
T Consensus 833 kcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa----------~LSnGci~~ 902 (1034)
T KOG4190|consen 833 KCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA----------ALSNGCIAI 902 (1034)
T ss_pred EecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH----------HhcCCcEEE
Confidence 33332 3778888 45699999999 998887766655567778888888887776643 256789999
Q ss_pred eeecceeee
Q 015220 402 SLLMFVTCK 410 (411)
Q Consensus 402 ~~i~tGk~~ 410 (411)
-|-.|||++
T Consensus 903 LDaR~G~vI 911 (1034)
T KOG4190|consen 903 LDARNGKVI 911 (1034)
T ss_pred EecCCCcee
Confidence 999999875
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.3 Score=48.32 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=47.2
Q ss_pred eeEEEE-ecCeEEEEecC-Cceee---eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVT---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~---s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+.+++. +|+.+||.||+ =+|+. +.=|-++ -|--||||++|+.|.+|+ -+-||.+.-+
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL--------CvcWSPDGKyIvtGGEDD----------LVtVwSf~er 364 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL--------CVCWSPDGKYIVTGGEDD----------LVTVWSFEER 364 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHHHHHhhccceE--------EEEEcCCccEEEecCCcc----------eEEEEEeccc
Confidence 445555 99999999999 44554 3334444 478899999999999999 8999999888
Q ss_pred eee
Q 015220 408 TCK 410 (411)
Q Consensus 408 k~~ 410 (411)
+++
T Consensus 365 RVV 367 (636)
T KOG2394|consen 365 RVV 367 (636)
T ss_pred eEE
Confidence 764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.98 E-value=4.9 Score=42.95 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=105.0
Q ss_pred CcceeecccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEee------CceEEEEeccC---ceeEEEEe-CCEEEEEE
Q 015220 184 FALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDK---NVQEIKIS-PGIMLLIF 250 (411)
Q Consensus 184 ~~LF~~~~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~------~Ys~iysLs~~---~VqeIkIS-dG~~Lai~ 250 (411)
+||.+++.+.|-|-| ||-. ||+-|+++++|--.+||++. +-++|....++ +|-....- ..-+|..+
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred cchhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 678888888888864 8876 59999999999999999985 34667655544 45555544 33333322
Q ss_pred ecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec-ceeEEe-ecCceeeEEEcccce----EEEeeccccCCCc
Q 015220 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVK-QENENLQILDVRNFE----LTEVSRTEFMTPS 324 (411)
Q Consensus 251 q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~-ekllIK-Qe~~~LkI~dL~t~e----~~~v~~T~f~hps 324 (411)
..- --+.+-+|+|.+-+.-|++- -..-.|+-|-|++ +++|+- .......|||.+.+. +++.. ..|+
T Consensus 124 ~~~---~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A----N~~~ 195 (609)
T KOG4227|consen 124 ERW---GTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA----NSGK 195 (609)
T ss_pred CCc---ceeEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec----CCCc
Confidence 222 12446688888888876642 1123788888876 555444 467778899998754 55532 2578
Q ss_pred eEEEEeec----eeEEEE-ecCeEEEEecC
Q 015220 325 AFIFLYEN----QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 325 AfifLy~s----qlFlSf-sd~tI~iWn~~ 349 (411)
+|+-+-.+ .|+++- +.+-+-+||.+
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRR 225 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeec
Confidence 88776654 566666 66677888877
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.5 Score=48.34 Aligned_cols=180 Identities=16% Similarity=0.279 Sum_probs=104.1
Q ss_pred EEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEE
Q 015220 140 RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 219 (411)
Q Consensus 140 rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykV 219 (411)
|.+-||+-|-.|..| .++ .-.+-++ |.+|.+-.+ |++.+ .-=--|+-++.||= |+.+..++...+
T Consensus 137 RDm~y~~~scDly~~--gsg-----~evYRlN---LEqGrfL~P---~~~~~-~~lN~v~in~~hgL-la~Gt~~g~VEf 201 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLV--GSG-----SEVYRLN---LEQGRFLNP---FETDS-GELNVVSINEEHGL-LACGTEDGVVEF 201 (703)
T ss_pred ccccccCCCccEEEe--ecC-----cceEEEE---ccccccccc---ccccc-ccceeeeecCccce-EEecccCceEEE
Confidence 667788888777773 322 2233332 233333221 23221 00113666777774 344555999999
Q ss_pred EEeeCceEEEEeccC-------------ceeEEEEeC-CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCccee
Q 015220 220 FDLKNYTMLYSISDK-------------NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (411)
Q Consensus 220 WdL~~Ys~iysLs~~-------------~VqeIkISd-G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~F 285 (411)
||.++=+..-+|.-. .|..++.+| |+=++++..+.
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G------------------------------- 250 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG------------------------------- 250 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-------------------------------
Confidence 999997754444311 488888884 88777665443
Q ss_pred eeeecceeEEeecCceeeEEEcccceEEEeeccccCCCce-EEEEee--ceeEEEEecCeEEEEecC-Cceeeeeccccc
Q 015220 286 IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSA-FIFLYE--NQLFLTFRNRTVAVWNFR-GELVTSFEDHLL 361 (411)
Q Consensus 286 LE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsA-fifLy~--sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~ 361 (411)
.+-||||+++++..|.+-...-|-- +.+... ....+|.-...++||+.. |...++.|--.
T Consensus 251 ---------------~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~- 314 (703)
T KOG2321|consen 251 ---------------SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS- 314 (703)
T ss_pred ---------------cEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC-
Confidence 2334555555555444443333321 111111 255778888899999999 99999887544
Q ss_pred cCCCCccceEEEcCCCCEEEEEecC
Q 015220 362 WHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 362 ~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
.+|-+-.=|++-+++.+-.+
T Consensus 315 -----~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 315 -----DLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred -----CcCceeeecCCceEEEecCC
Confidence 45555555777777665433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.25 Score=53.94 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=40.7
Q ss_pred CCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 349 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 349 ~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+-++-.-|+||.+ -+|.+.-++||++|+|||.|. -|+|||.+.-|++
T Consensus 39 rL~lE~eL~GH~G-----CVN~LeWn~dG~lL~SGSDD~----------r~ivWd~~~~Kll 85 (758)
T KOG1310|consen 39 RLDLEAELTGHTG-----CVNCLEWNADGELLASGSDDT----------RLIVWDPFEYKLL 85 (758)
T ss_pred hcchhhhhccccc-----eecceeecCCCCEEeecCCcc----------eEEeecchhccee
Confidence 3456667899999 789999999999999999998 9999998876654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.47 E-value=13 Score=41.23 Aligned_cols=207 Identities=17% Similarity=0.300 Sum_probs=129.5
Q ss_pred ceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeE-EeeCCCCeEEEeecCCCeEEEEEeeCceEE--EEeccCceeEE
Q 015220 163 SSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFV-EFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEI 239 (411)
Q Consensus 163 s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgfv-EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~~VqeI 239 (411)
-.=+|..- ||+-|.+-.+|+.|.+-.+.||=|- -||| |-++--.. .++-|++-..+-++ .+|.-..|+.+
T Consensus 280 e~~~l~IW---DI~tG~lkrsF~~~~~~~~~WP~frWS~Dd---Ky~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~F 352 (698)
T KOG2314|consen 280 EGQQLIIW---DIATGLLKRSFPVIKSPYLKWPIFRWSHDD---KYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDF 352 (698)
T ss_pred CCceEEEE---EccccchhcceeccCCCccccceEEeccCC---ceeEEecc-ceEEEEecCceeeecccccCCccccCc
Confidence 34444444 8889999899999999999999774 3444 44433333 56777776665544 55666699999
Q ss_pred EEe-CCEEEEEEecCCCceee--EEEEecCCcEEeEeee------ccccCCcceeeeeecceeE---EeecCceeeEEEc
Q 015220 240 KIS-PGIMLLIFTKASGHVPL--KILSIEDGTVLKSFNH------LLHRNKKVDFIEQFNEKLL---VKQENENLQILDV 307 (411)
Q Consensus 240 kIS-dG~~Lai~q~t~~~ipi--KIl~I~tG~~L~t~~~------LL~h~K~I~FLE~~~ekll---IKQe~~~LkI~dL 307 (411)
.-| -+++||...+.-+.+|. .|+.+.+++.+++-++ -||=||.=++|..-.+... +|.-=.++.|.-+
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 999 67889999999999985 6799999999998662 2333333333333322221 1111234445544
Q ss_pred ccceEEEeeccccCCCceEEEEe---eceeEEEE----ecCeEEEEecC-----CceeeeeccccccCCCCccceEEEcC
Q 015220 308 RNFELTEVSRTEFMTPSAFIFLY---ENQLFLTF----RNRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITS 375 (411)
Q Consensus 308 ~t~e~~~v~~T~f~hpsAfifLy---~sqlFlSf----sd~tI~iWn~~-----Gel~~s~e~H~~~~~~c~~n~i~Is~ 375 (411)
+..++=. -.-..++.|+..+ ...-|.++ ...++.+|.+. -+|+..|+.. .-|+|+.||
T Consensus 433 reKdIpv---e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~-------~~N~vfwsP 502 (698)
T KOG2314|consen 433 REKDIPV---EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK-------FANTVFWSP 502 (698)
T ss_pred eccCCCc---eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc-------ccceEEEcC
Confidence 4433222 1122234444443 22455555 23467777665 2366666663 348999999
Q ss_pred CCCEEEEEecC
Q 015220 376 DQDLIISYCKA 386 (411)
Q Consensus 376 Dqd~iiS~~~d 386 (411)
-|++++-+-.-
T Consensus 503 kG~fvvva~l~ 513 (698)
T KOG2314|consen 503 KGRFVVVAALV 513 (698)
T ss_pred CCcEEEEEEec
Confidence 99999988765
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=87.28 E-value=34 Score=34.25 Aligned_cols=167 Identities=15% Similarity=0.170 Sum_probs=92.9
Q ss_pred CcceeecccC-CCCeEEeeCCCCeEEEeecCCCe-EEEEEeeCce------EEEEec---cCceeEEEEeCCEEEEEEec
Q 015220 184 FALFESESLK-WPGFVEFDDVNGKVLTYSAQDSI-YKVFDLKNYT------MLYSIS---DKNVQEIKISPGIMLLIFTK 252 (411)
Q Consensus 184 ~~LF~~~~l~-~PgfvEFDd~NGkiLt~~~~ds~-ykVWdL~~Ys------~iysLs---~~~VqeIkISdG~~Lai~q~ 252 (411)
..+|+...-. |--.+....-...+++......+ -.||-+.... ....|. +.....+...++.++++.+.
T Consensus 217 ~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 217 ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTND 296 (414)
T ss_dssp EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-T
T ss_pred eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCC
Confidence 3577653211 11124555444444444444433 4555444432 333333 22334555558888888877
Q ss_pred CCCceeeEEEEecCCcEEeEeeeccccCC--cceeeeeecceeEEee---cCceeeEEEcc-cceEEEeeccccCCCceE
Q 015220 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQ---ENENLQILDVR-NFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 253 t~~~ipiKIl~I~tG~~L~t~~~LL~h~K--~I~FLE~~~ekllIKQ---e~~~LkI~dL~-t~e~~~v~~T~f~hpsAf 326 (411)
..+.--|--.++.+...-..-..++.+.. .++-+..+.++|++.. ....|.++|+. +.+...++....+. +
T Consensus 297 ~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~---v 373 (414)
T PF02897_consen 297 DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGS---V 373 (414)
T ss_dssp T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSE---E
T ss_pred CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceE---E
Confidence 66766677778887774222213556555 5899999999996654 67899999999 77777766555432 2
Q ss_pred EEEe----eceeEEEEe----cCeEEEEecC-Ccee
Q 015220 327 IFLY----ENQLFLTFR----NRTVAVWNFR-GELV 353 (411)
Q Consensus 327 ifLy----~sqlFlSfs----d~tI~iWn~~-Gel~ 353 (411)
..+. .++++++++ -.++--||+. |++.
T Consensus 374 ~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 374 SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 2222 337788773 3567777777 6643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=87.13 E-value=44 Score=35.38 Aligned_cols=153 Identities=16% Similarity=0.083 Sum_probs=74.2
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE--eeccc-
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE--VSRTE- 319 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~--v~~T~- 319 (411)
||++++........-.+-++| .+|.+-+.....-.+... +++..++.|+.-.++.+..+|+.-....+ ++...
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~---~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS---FKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYY 189 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS---EEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce---eeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCccc
Confidence 888777774444444444444 478888775533333222 45556555555555999999997543333 33311
Q ss_pred cCCCceEEEEeeceeEEEEe--------------cCeEEEEecCCceee--eeccccccCCC------------------
Q 015220 320 FMTPSAFIFLYENQLFLTFR--------------NRTVAVWNFRGELVT--SFEDHLLWHPD------------------ 365 (411)
Q Consensus 320 f~hpsAfifLy~sqlFlSfs--------------d~tI~iWn~~Gel~~--s~e~H~~~~~~------------------ 365 (411)
-+|= .+..+...++++... ...|-..|..|+.+. .+.+|+.-...
T Consensus 190 ~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred cccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 1121 122333334433332 334555566699888 68888832111
Q ss_pred --CccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 366 --CNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 366 --c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
--.|+|..-+ |+.+|+|.=.-+ +|-..|..|||+.
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s----------~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQS----------AVIKIDYRTGKIK 306 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-----------EEEEEE-TTS-EE
T ss_pred CccccCccEEeCCCCeEEEEcCcce----------EEEEEECCCCcEE
Confidence 2357777666 888888876665 7777778888864
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.99 E-value=0.58 Score=48.75 Aligned_cols=194 Identities=18% Similarity=0.247 Sum_probs=121.1
Q ss_pred CCC-eEEEeecCCCeEEEEEeeCceEEE-EeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEec--------------
Q 015220 203 VNG-KVLTYSAQDSIYKVFDLKNYTMLY-SISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-------------- 265 (411)
Q Consensus 203 ~NG-kiLt~~~~ds~ykVWdL~~Ys~iy-sLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-------------- 265 (411)
|+| .||+-+.=+.-+.||+|.|.+..+ .-...+++-+++- ||+|-++..+-.=.=|+.|++-+
T Consensus 101 PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D 180 (447)
T KOG4497|consen 101 PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID 180 (447)
T ss_pred CCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc
Confidence 567 567777778999999999988553 3345699999999 99999998887644444333222
Q ss_pred --------CCcEEeEee-------eccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEE
Q 015220 266 --------DGTVLKSFN-------HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (411)
Q Consensus 266 --------tG~~L~t~~-------~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfif 328 (411)
||-.|.-.- +.-++.--+-|+|-++.+++++= -+..++|+|-.+=+.+ ++|.|+.++..
T Consensus 181 ltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f----~eflhl~s~~d 256 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF----GEFLHLCSYHD 256 (447)
T ss_pred ccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh----hhhccchhccC
Confidence 333333111 22345567889999998888775 4677999998887777 89999999875
Q ss_pred ----Eeec------ee---EEEE--ecCeEEEEecCC------ceeeeecccc----ccCCCCccceEEEcCCCCEEEEE
Q 015220 329 ----LYEN------QL---FLTF--RNRTVAVWNFRG------ELVTSFEDHL----LWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 329 ----Ly~s------ql---FlSf--sd~tI~iWn~~G------el~~s~e~H~----~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
+-+. |+ =|+| .|-.--+|.-.- ++-..+-.-. -=.|-|.+-.++-|+|...+..-
T Consensus 257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr 336 (447)
T KOG4497|consen 257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR 336 (447)
T ss_pred chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee
Confidence 2222 22 2344 333333343220 0111111111 11467888999999998776432
Q ss_pred ecCCCCCccccCCceEEEeeeccee
Q 015220 384 CKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 384 ~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+| ..+ ..+=+||+..=|
T Consensus 337 -nd----~~P---nalW~Wdlq~l~ 353 (447)
T KOG4497|consen 337 -ND----KYP---NALWLWDLQNLK 353 (447)
T ss_pred -cC----CCC---ceEEEEechhhh
Confidence 22 111 367788886544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.86 E-value=0.96 Score=49.83 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=83.1
Q ss_pred eccccCCcceee-eeecceeEE-eecCceeeEEEccc-ceEEEee---ccccCCCceEEEEeec--eeEEEEecCeEEEE
Q 015220 275 HLLHRNKKVDFI-EQFNEKLLV-KQENENLQILDVRN-FELTEVS---RTEFMTPSAFIFLYEN--QLFLTFRNRTVAVW 346 (411)
Q Consensus 275 ~LL~h~K~I~FL-E~~~ekllI-KQe~~~LkI~dL~t-~e~~~v~---~T~f~hpsAfifLy~s--qlFlSfsd~tI~iW 346 (411)
...||+.+|..| ++.||+-+| ++.+...|+|.++. |+-+.-+ =|+-.|..-++-+..- ..++.-.|+-|-+|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlW 809 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLW 809 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceee
Confidence 457899988876 578888865 67999999999986 2222211 1566677766655443 23555589999999
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|+- |.|+...++----. -..|.--+-. |--+++.||.+. .|+||+|-.+++
T Consensus 810 DPFigr~Laq~~dapk~~--a~~~ikcl~nv~~~iliAgcsae---------STVKl~DaRsce 862 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEG--AGGNIKCLENVDRHILIAGCSAE---------STVKLFDARSCE 862 (1034)
T ss_pred cccccchhHhhhcCcccC--CCceeEecccCcchheeeeccch---------hhheeeeccccc
Confidence 998 99988665432211 1233333333 788999998886 288888877664
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.85 E-value=2.8 Score=46.28 Aligned_cols=113 Identities=13% Similarity=0.143 Sum_probs=89.5
Q ss_pred ccccCCcceeeeeecceeEEeecC--ceeeEEEcccceEEEeeccccCCCce---EEEEee--ceeEEEE-ecCeEEEEe
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNFELTEVSRTEFMTPSA---FIFLYE--NQLFLTF-RNRTVAVWN 347 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe~--~~LkI~dL~t~e~~~v~~T~f~hpsA---fifLy~--sqlFlSf-sd~tI~iWn 347 (411)
|-||+-=|+.||-.-++-|+++++ -.|-|||....++.-+-.|. |..- +-||-+ +.+.+|+ .|..|+++|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--cccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 789999999999999999999865 57889999987777654443 4432 233443 4899999 999999999
Q ss_pred cCC-----------ceeeeeccccccCCCCccceEEEcCCC-CEEEEEecCCCCCccccCCceEEEeeec
Q 015220 348 FRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 348 ~~G-----------el~~s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+.- +..+.+..|.. -++.|+.-|++ -+.-|++.|- ||.=.||.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~-----rVKria~~p~~PhtfwsasEDG----------tirQyDiR 178 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTD-----RVKRIATAPNGPHTFWSASEDG----------TIRQYDIR 178 (758)
T ss_pred cccccccccccCccchhhhhhhhhh-----hhhheecCCCCCceEEEecCCc----------ceeeeccc
Confidence 982 35567888888 89999999999 8888888885 88777774
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.83 E-value=4.3 Score=44.56 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=64.9
Q ss_pred eeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeeeecc
Q 015220 286 IEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFED 358 (411)
Q Consensus 286 LE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~ 358 (411)
..-++|+..++ +.+.-|+|.|..+=|+..|-+.+| -+++|+.-| ++.+|+ .|..|.||.|. +.+|+.=.|
T Consensus 296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred eeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc
Confidence 44466766554 688899999999999999999999 689999988 778888 99999999999 999999999
Q ss_pred cccc
Q 015220 359 HLLW 362 (411)
Q Consensus 359 H~~~ 362 (411)
|..|
T Consensus 373 HkSW 376 (636)
T KOG2394|consen 373 HKSW 376 (636)
T ss_pred cccc
Confidence 9998
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.82 E-value=41 Score=34.73 Aligned_cols=188 Identities=12% Similarity=0.039 Sum_probs=94.3
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEE----EeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIK----ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIk----ISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+-.+|+.+++.+.+++|.+.+-+-...+.|...-.|. ++|..+=+. ..++-=-+|++.++-| ..+...|. +
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~--i~sndht~k~~~~~~~-s~~~~~h~--~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLN--IASNDHTGKTMVVSGD-SNKFAVHN--Q 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccccee--eccCCcceeEEEEecC-cccceeec--c
Confidence 3457888889999999999964433223222111111 112221000 0111112333333211 11111110 0
Q ss_pred CCcceeeeeecceeEEee--cCceeeEEEccc-c---eEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC--C
Q 015220 280 NKKVDFIEQFNEKLLVKQ--ENENLQILDVRN-F---ELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR--G 350 (411)
Q Consensus 280 ~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t-~---e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~--G 350 (411)
+--+.-+.++|+.-+... .+..+=.|-+-. + +.+.+.+|.. |..-..|=-.+..|++. +|+++.|||.| |
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D-~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD-HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-CceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 122555666666665554 222333344433 1 2233455554 44333444444778888 99999999999 6
Q ss_pred ceeeeeccccccCCCCccceEEEcCCC--CEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dq--d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.|.++-..... |++=.+.+.-.|+-| |||+ ..|.-+-.++-|..+|+
T Consensus 237 tpm~~~sstrp-~hnGa~R~c~Fsl~g~lDLLf----------~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 237 TPMAEISSTRP-HHNGAFRVCRFSLYGLLDLLF----------ISEHFSRVHVVDTRNYV 285 (344)
T ss_pred cchhhhcccCC-CCCCceEEEEecCCCcceEEE----------EecCcceEEEEEcccCc
Confidence 67665444443 355578888877643 3332 12444566777776664
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.53 E-value=24 Score=36.89 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=103.7
Q ss_pred EEEEecCC-CceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eE--Eee-cCceeeEEEccc--ceEEEeec-
Q 015220 247 LLIFTKAS-GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LL--VKQ-ENENLQILDVRN--FELTEVSR- 317 (411)
Q Consensus 247 Lai~q~t~-~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--ll--IKQ-e~~~LkI~dL~t--~e~~~v~~- 317 (411)
+.+...|+ ..=+|-+|++.+-+--.+...+...-..+++|++.+++ |+ .+. +...+-.|.+-. |++..+..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 44455552 12355666666444334444566777788899999988 43 333 244566666654 77766433
Q ss_pred cccCCCceEEEEeece-eEEEE--ecCeEEEEecC--Cceee--eeccccccCCCCc-----cceEEEcCCCCEEEEEec
Q 015220 318 TEFMTPSAFIFLYENQ-LFLTF--RNRTVAVWNFR--GELVT--SFEDHLLWHPDCN-----TNNIYITSDQDLIISYCK 385 (411)
Q Consensus 318 T~f~hpsAfifLy~sq-lFlSf--sd~tI~iWn~~--Gel~~--s~e~H~~~~~~c~-----~n~i~Is~Dqd~iiS~~~ 385 (411)
+.-++|-..+++.+.. .+++- ..+.|.++-++ |.|.. .+..|.+--|.-. .-.+-+||||+++++-+-
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 4556776888888885 44444 78999999997 87554 7888988744422 556789999999988653
Q ss_pred CCCCCccccCCceEEEeeecceeee
Q 015220 386 ADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 386 d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++-.|.++++.-|++-
T Consensus 165 ---------G~Dri~~y~~~dg~L~ 180 (346)
T COG2706 165 ---------GTDRIFLYDLDDGKLT 180 (346)
T ss_pred ---------CCceEEEEEcccCccc
Confidence 3347999999988863
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.12 E-value=1.7 Score=44.24 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=73.0
Q ss_pred eecCCCeEEEEEeeCceEE------EEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 210 YSAQDSIYKVFDLKNYTML------YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 210 ~~~~ds~ykVWdL~~Ys~i------ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
+++.+.-+-+|+|+..+.- .+|++-.|++++|. ||-+||+.-=-| -|.|++-.|+.+|.- |=-|+.-
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~---RiRVyswrtl~pLAV---LkyHsag 295 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDH---RIRVYSWRTLNPLAV---LKYHSAG 295 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCC---cEEEEEeccCCchhh---hhhhhcc
Confidence 3445777899999987533 45555599999999 999988876555 378999999999998 4457799
Q ss_pred ceeeeeecceeE--EeecCceeeEEEc
Q 015220 283 VDFIEQFNEKLL--VKQENENLQILDV 307 (411)
Q Consensus 283 I~FLE~~~ekll--IKQe~~~LkI~dL 307 (411)
|+.++-+++.-+ .++++..|-+|+|
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999444 4568889999987
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.98 E-value=1.2 Score=46.55 Aligned_cols=173 Identities=13% Similarity=0.203 Sum_probs=99.8
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEee------CceEEEEeccC------------ceeEEEEe-CCEEEEEEecCCCcee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDK------------NVQEIKIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~------~Ys~iysLs~~------------~VqeIkIS-dG~~Lai~q~t~~~ip 258 (411)
-||-...--+++|+...+++|+=||+ .++.+++.+.+ -|++||.| +|-.+|. ..++.
T Consensus 219 aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils----RDylt 294 (433)
T KOG1354|consen 219 AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS----RDYLT 294 (433)
T ss_pred hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE----eccce
Confidence 47888888999999999999999999 36677777744 58899999 7777665 46899
Q ss_pred eEEEEe-cCCcEEeEeeeccccCC------ccee------eeeeccee--EEeecCceeeEEEcccceEEEeeccccCCC
Q 015220 259 LKILSI-EDGTVLKSFNHLLHRNK------KVDF------IEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTP 323 (411)
Q Consensus 259 iKIl~I-~tG~~L~t~~~LL~h~K------~I~F------LE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hp 323 (411)
+||||+ ++.+++.+....=.-.. +-+. .-.+++.. +--+=++...++|+..|...-+ |+...+
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~--tl~asr 372 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDF--TLEASR 372 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceee--cccccc
Confidence 999999 78888876541000000 0000 12344433 3334467788999776655442 333222
Q ss_pred ceE--EEEeeceeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCE
Q 015220 324 SAF--IFLYENQLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (411)
Q Consensus 324 sAf--ifLy~sqlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ 379 (411)
..- -.+.-...-.+. +....++|--.- =.+...=|..|||. .|.|++-....|
T Consensus 373 ~~~~~~~~~k~~~V~~~g~r~~~~~~vd~l-df~kkilh~aWhp~--en~ia~aatnnl 428 (433)
T KOG1354|consen 373 KNMKPRKVLKLRLVSSSGKRKRDEISVDAL-DFRKKILHTAWHPK--ENSIAVAATNNL 428 (433)
T ss_pred cCCcccccccceeeecCCCccccccccchh-hhhhHHHhhccCCc--cceeeeeecCce
Confidence 221 111111222222 222222221110 12345569999995 455555444433
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=85.71 E-value=12 Score=42.82 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=86.5
Q ss_pred CceeeEEEEecCCcEEeEeeeccccCCcceee-------eeecceeEEeecCceeeEEEcccceEEEee--ccccCCCce
Q 015220 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI-------EQFNEKLLVKQENENLQILDVRNFELTEVS--RTEFMTPSA 325 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FL-------E~~~ekllIKQe~~~LkI~dL~t~e~~~v~--~T~f~hpsA 325 (411)
+.-.|.-+||++|+++-+... +..-+|.-+ ++.++..++-=.++.|--||.|-.....|- --.+-+..-
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~--~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKV--HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeec--CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 334577899999999887552 222222222 234677788889999999999975422231 113456667
Q ss_pred EEEEeec--eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 326 FIFLYEN--QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 326 fifLy~s--qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
|.|++++ .-++.+ .+|.||++|--|-.-.|+---++ =-+..|-+|.||+.|+.-|+-
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG----~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLG----DPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCC----CCeeEEEecCCCcEEEEeecc
Confidence 8899888 557777 88999999966754333333333 267889999999999999986
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.56 E-value=2.5 Score=51.77 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=98.8
Q ss_pred EeecCCCeEEEEEeeCceEEEEec---cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC---C
Q 015220 209 TYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN---K 281 (411)
Q Consensus 209 t~~~~ds~ykVWdL~~Ys~iysLs---~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~---K 281 (411)
+.+++|+..++|----...++.-- .-.|+.++.+ .|-=..+.+... .|-+|.+. -++..+ ---|+ .
T Consensus 2224 ltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg---~l~l~q~~-pk~~~s---~qchnk~~~ 2296 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDG---DLSLWQAS-PKPYTS---WQCHNKALS 2296 (2439)
T ss_pred EecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCC---ceeecccC-Ccceec---cccCCcccc
Confidence 357889999999988877775443 2366666666 333223332222 33444443 111111 11122 2
Q ss_pred cceeeeeecceeEEee---cCceeeEEEcc-cceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCC-ce
Q 015220 282 KVDFIEQFNEKLLVKQ---ENENLQILDVR-NFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRG-EL 352 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQ---e~~~LkI~dL~-t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~G-el 352 (411)
+..||. ..+.=|| +|.++-+||-+ .+....|+ .-|+....++++- |+|+|+ ++|.|-+||.+- .|
T Consensus 2297 Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2297 DFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred ceeeee---hhhhccccCCCCCcccchhcccCcccceee---eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 334554 4444444 77899999954 46666776 4477777776654 999999 999999999984 34
Q ss_pred eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 353 ~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.-++-. .- .++++++|+.- |.|+||++.+
T Consensus 2371 ~h~~~~--------------~~-~~~~f~~~ss~----------g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2371 RHTFQA--------------LD-TREYFVTGSSE----------GNIKIWRLSE 2399 (2439)
T ss_pred HHHhhh--------------hh-hhheeeccCcc----------cceEEEEccc
Confidence 334433 12 67888888766 5999999764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.65 E-value=20 Score=38.08 Aligned_cols=127 Identities=12% Similarity=0.197 Sum_probs=64.6
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEE-Ecccce-
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL-DVRNFE- 311 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~-dL~t~e- 311 (411)
..+.+..+ +|.|+++....+- -|++-. +-.-+. .|.-...=|.. .+..-+..++++|+|+ |+.+..
T Consensus 34 ~p~~ls~npngr~v~V~g~geY----~iyt~~-~~r~k~----~G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEY----EIYTAL-AWRNKA----FGSGLSFVWSS--RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEE----EEEETT-TTEEEE----EEE-SEEEE-T--SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCeeEEECCCCCEEEEEcCCEE----EEEEcc-CCcccc----cCceeEEEEec--CccEEEEECCCeEEEEEcCccccc
Confidence 46777777 7888888222221 122211 111111 23333333444 4444445558999995 665544
Q ss_pred -EEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 312 -LTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 312 -~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
.+++ |...--+....+++.-+++.|.+||.. |.++++.+-. .++.|+.|+||+++.=-|++
T Consensus 103 k~i~~-------~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-------~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 103 KSIKL-------PFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVS-------AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp ------------SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS--------E-EEEEE-TTSSEEEEE-S-
T ss_pred eEEcC-------CcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecC-------CCcEEEEECCCCEEEEEeCC
Confidence 3432 222222333677777788899999999 9999998732 36899999999999888877
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.21 E-value=72 Score=34.45 Aligned_cols=153 Identities=8% Similarity=0.010 Sum_probs=94.3
Q ss_pred EEEeCCEEEEEEecCCC--ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecC-----------------
Q 015220 239 IKISPGIMLLIFTKASG--HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN----------------- 299 (411)
Q Consensus 239 IkISdG~~Lai~q~t~~--~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~----------------- 299 (411)
+..-+|.+.+++-.... ...+-.+|..+.+=.. .-.++...--..+...++++++--+.
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~--~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM--LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE--CCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence 33447887777765332 2347778888775332 21233333333466778888886532
Q ss_pred -------ceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ec------CeEEEEecCC-c---eeeeeccccc
Q 015220 300 -------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN------RTVAVWNFRG-E---LVTSFEDHLL 361 (411)
Q Consensus 300 -------~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd------~tI~iWn~~G-e---l~~s~e~H~~ 361 (411)
..+..||..+.+-..+++-......+-.++...+||+.+ .+ .+++.||+.- + .+.++..+..
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 358889999999888765443333333455567999998 32 3578999985 4 4455554443
Q ss_pred cCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 362 ~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
....+.+ ||.+.+.|.-+. ..++..+|+.|++
T Consensus 505 -----~~~~~~~--~~~iyv~Gg~~~--------~~~~e~yd~~~~~ 536 (557)
T PHA02713 505 -----ALHTILH--DNTIMMLHCYES--------YMLQDTFNVYTYE 536 (557)
T ss_pred -----cceeEEE--CCEEEEEeeecc--------eeehhhcCccccc
Confidence 3444444 788888888654 2367777777765
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=83.00 E-value=46 Score=32.45 Aligned_cols=80 Identities=9% Similarity=0.063 Sum_probs=54.3
Q ss_pred ceeeEEEcccc-----eEEEeeccccCCCceEEEEee-ceeEEEEecCeEEEEecC-Cc-eeeeeccccccCCCCccceE
Q 015220 300 ENLQILDVRNF-----ELTEVSRTEFMTPSAFIFLYE-NQLFLTFRNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNI 371 (411)
Q Consensus 300 ~~LkI~dL~t~-----e~~~v~~T~f~hpsAfifLy~-sqlFlSfsd~tI~iWn~~-Ge-l~~s~e~H~~~~~~c~~n~i 371 (411)
..|.++++.+. ++..+..+.+ +.++.++.. +..++...+++|.+|++. .+ +++ -.-+.. ..-.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~-~~~~~~-----~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLK-KAFYDS-----PFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEE-EEEE-B-----SSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCCEEEEeecCEEEEEEccCcccchh-hheecc-----eEEEE
Confidence 67999999995 6666766654 566766653 355777799999999999 55 333 222222 22455
Q ss_pred EEcCCCCEEEEEecCC
Q 015220 372 YITSDQDLIISYCKAD 387 (411)
Q Consensus 372 ~Is~Dqd~iiS~~~d~ 387 (411)
.|+.-+++|+.|...+
T Consensus 134 sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 134 SLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEETTEEEEEESSS
T ss_pred EEeccccEEEEEEccc
Confidence 6666688999888777
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=89 Score=34.79 Aligned_cols=195 Identities=14% Similarity=0.207 Sum_probs=102.1
Q ss_pred CeEEeeCCCCeEEEeecCC----CeEEEE--EeeCc----eEEEEeccCce-eEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 196 GFVEFDDVNGKVLTYSAQD----SIYKVF--DLKNY----TMLYSISDKNV-QEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~d----s~ykVW--dL~~Y----s~iysLs~~~V-qeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
+.+.|- ++|+-+.|...+ -.++|| ++.+. .+|++=.++.. ..+..+ ||.++++....+....+-+++
T Consensus 175 ~~~~w~-~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 175 PSFVWA-NDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred eEEEEe-eCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence 457774 356666665442 125555 45554 25777444422 244555 888888888888778888888
Q ss_pred e--cCCcEEeEeeeccccCCcc-eeeeeecceeEEeec--Cc--eeeEEEccc-ceEEE-eeccccCCCceEEEEeecee
Q 015220 264 I--EDGTVLKSFNHLLHRNKKV-DFIEQFNEKLLVKQE--NE--NLQILDVRN-FELTE-VSRTEFMTPSAFIFLYENQL 334 (411)
Q Consensus 264 I--~tG~~L~t~~~LL~h~K~I-~FLE~~~ekllIKQe--~~--~LkI~dL~t-~e~~~-v~~T~f~hpsAfifLy~sql 334 (411)
. .+|+. .. ++.+..+. ...+..++.++|... .. +|-..++.+ ++... ++...-..-+.+. +..+.+
T Consensus 254 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~-~~~~~l 328 (686)
T PRK10115 254 AELADAEP-FV---FLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFT-LFTDWL 328 (686)
T ss_pred CcCCCCCc-eE---EEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEE-EECCEE
Confidence 4 46663 22 33444333 345566677788773 23 444446652 32222 2221111112222 234577
Q ss_pred EEEE-ecCeEEEEec--CCceeeeec-cccccCCCCccceEEEc--CC-CCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 335 FLTF-RNRTVAVWNF--RGELVTSFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 335 FlSf-sd~tI~iWn~--~Gel~~s~e-~H~~~~~~c~~n~i~Is--~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+++. .++.-++|-+ .|..++.+. +. |.+. -.+-.+ +| ..++++++... .-+++-.+|..||
T Consensus 329 ~~~~~~~g~~~l~~~~~~~~~~~~l~~~~----~~~~-~~~~~~~~~~~~~~~~~~ss~~-------~P~~~y~~d~~~~ 396 (686)
T PRK10115 329 VVEERQRGLTSLRQINRKTREVIGIAFDD----PAYV-TWIAYNPEPETSRLRYGYSSMT-------TPDTLFELDMDTG 396 (686)
T ss_pred EEEEEeCCEEEEEEEcCCCCceEEecCCC----CceE-eeecccCCCCCceEEEEEecCC-------CCCEEEEEECCCC
Confidence 7777 5666555544 444444443 21 1111 112234 33 45788888775 2257777777777
Q ss_pred e
Q 015220 408 T 408 (411)
Q Consensus 408 k 408 (411)
+
T Consensus 397 ~ 397 (686)
T PRK10115 397 E 397 (686)
T ss_pred c
Confidence 5
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.16 E-value=56 Score=34.73 Aligned_cols=139 Identities=12% Similarity=0.177 Sum_probs=68.7
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
+|-.+.+++ ||+-++- +.++.|.+..-....--- .++-..-+=+++|- .|+.... + -|+|+.=-+++..+++
T Consensus 34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~--~G~g~~~vw~~~n~-yAv~~~~-~--~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKA--FGSGLSFVWSSRNR-YAVLESS-S--TIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEE--EEE-SEEEE-TSSE-EEEE-TT-S---EEEEETTEE-TT---
T ss_pred CCeeEEECC-CCCEEEE-EcCCEEEEEEccCCcccc--cCceeEEEEecCcc-EEEEECC-C--eEEEEEcCccccceEE
Confidence 488888876 6665555 788999988833332211 12233333333555 3444442 2 2455422233333332
Q ss_pred eeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCC
Q 015220 274 NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~G 350 (411)
. -+...-.+|.+.+|.-.+++.|.+||+.+++.+. ..-..| +-.++-+ .-++.+ ++.++-|++.+-
T Consensus 106 ~------~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~---~i~v~~--vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 106 K------LPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIR---RIDVSA--VKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp --------SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEE---EESS-E---EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred c------CCcccceEEcCcEEEEECCCCEEEEEhhHcceee---EEecCC--CcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 2 1234566888888888888899999999998887 443333 3333433 334444 777888888876
Q ss_pred c
Q 015220 351 E 351 (411)
Q Consensus 351 e 351 (411)
+
T Consensus 175 ~ 175 (443)
T PF04053_consen 175 E 175 (443)
T ss_dssp H
T ss_pred h
Confidence 6
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=81.70 E-value=37 Score=33.30 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=91.9
Q ss_pred CCCeEEEeecCCCeEEEEEee--CceEEEEecc-CceeEEEEe-CCEEEEEEecCCCce---eeEE---EEec--CCcEE
Q 015220 203 VNGKVLTYSAQDSIYKVFDLK--NYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHV---PLKI---LSIE--DGTVL 270 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~--~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~i---piKI---l~I~--tG~~L 270 (411)
.++..++. +...++.||+|. .-+++.+.+- ..|..+.-| .|-.|++-...++.. .+.+ |... +.+++
T Consensus 27 g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 27 GPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred CCceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 44566666 778889999999 4557777763 388888888 899999998888777 4444 2222 33333
Q ss_pred eEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecC-
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR- 349 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~- 349 (411)
.- -..||.-.--+-+...+. =|.+|+|- -..|..+-+=-.+.-++.++++++-+|.+.
T Consensus 106 ~v--RiaG~~v~~~~~~~~~~q-----------------leiiElPl--~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 106 RV--RIAGHRVTPSFNESSKDQ-----------------LEIIELPL--SEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EE--EEcccccccCCCCccccc-----------------eEEEEecC--CCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 31 134542222111111111 26777755 448999999999999999999999999998
Q ss_pred Cce------eeeeccccccC
Q 015220 350 GEL------VTSFEDHLLWH 363 (411)
Q Consensus 350 Gel------~~s~e~H~~~~ 363 (411)
+.. +-.||.++.++
T Consensus 165 ~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 165 QTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEecccccEEechhhhhhe
Confidence 433 33777777653
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=81.64 E-value=4.7 Score=42.33 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=28.2
Q ss_pred ccceEEEcC----CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 367 NTNNIYITS----DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 367 ~~n~i~Is~----Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
....+.++. +++++++-|.|. +++|||+.||+|+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~----------~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDH----------TLRIWSLETGQCL 253 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTS----------EEEEEETTTTCEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCC----------eEEEEECCCCeEE
Confidence 456678888 999999999998 9999999999994
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=81.06 E-value=7.9 Score=36.95 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=47.9
Q ss_pred CCCcceeecccCCCC-eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEe----------------ccCceeEEEEe-C
Q 015220 182 AGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI----------------SDKNVQEIKIS-P 243 (411)
Q Consensus 182 ~~~~LF~~~~l~~Pg-fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysL----------------s~~~VqeIkIS-d 243 (411)
+|+.+|-.-.|.+|- |+| .+|.-|..--.++.+.|||+++.+.+..- .+..|..+.|+ +
T Consensus 1 sGrrl~P~i~Lgs~~~~l~---~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~ 77 (219)
T PF07569_consen 1 SGRRLLPPIVLGSPVSFLE---CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN 77 (219)
T ss_pred CCccccCcEecCCceEEEE---eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC
Confidence 366677777788774 444 34555777889999999999999976443 33467777777 6
Q ss_pred CEEEEEEecC
Q 015220 244 GIMLLIFTKA 253 (411)
Q Consensus 244 G~~Lai~q~t 253 (411)
|+-|++....
T Consensus 78 G~PiV~lsng 87 (219)
T PF07569_consen 78 GVPIVTLSNG 87 (219)
T ss_pred CCEEEEEeCC
Confidence 7666555443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=80.01 E-value=51 Score=30.55 Aligned_cols=191 Identities=11% Similarity=0.067 Sum_probs=113.5
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEeccCceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
|.=+-||+.+|..+......+.+..||..+.+.. ..+.+ .--+.+. +|.+++. +.... .++++.+|+...
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~-~~~~~----~~~d~~~g~~~~ 74 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVA-DSGGI----AVVDPDTGKVTV 74 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEE-ETTCE----EEEETTTTEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEE-EcCce----EEEecCCCcEEE
Confidence 3445688888999988888888888888887653 44444 5556665 5554444 43222 445999997665
Q ss_pred Eeeeccc--cCCcceeeeeeccee-EEeecC---------ceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE
Q 015220 272 SFNHLLH--RNKKVDFIEQFNEKL-LVKQEN---------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF 338 (411)
Q Consensus 272 t~~~LL~--h~K~I~FLE~~~ekl-lIKQe~---------~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf 338 (411)
-+...-+ .....+-+.+.+++- ++-+-+ ..|-.++.. ++...+ .+.+..|-...|-.-. .+|++=
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEEEEETTSSEEEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccceEECCcchheeecc
Confidence 4443111 345556677777774 454322 234455555 454443 3345556555554433 456555
Q ss_pred -ecCeEEEEecC--Cc-e-----eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 339 -RNRTVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 339 -sd~tI~iWn~~--Ge-l-----~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
..+.|..++++ |. + +..+.+-.+ ....+++.+||.+.++..... .|.++|-. |++
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-----~pDG~~vD~~G~l~va~~~~~----------~I~~~~p~-G~~ 216 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-----YPDGLAVDSDGNLWVADWGGG----------RIVVFDPD-GKL 216 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-----EEEEEEEBTTS-EEEEEETTT----------EEEEEETT-SCE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCc-----CCCcceEcCCCCEEEEEcCCC----------EEEEECCC-ccE
Confidence 56678778876 32 1 122222222 367899999999988766443 88888877 776
Q ss_pred e
Q 015220 410 K 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 217 ~ 217 (246)
T PF08450_consen 217 L 217 (246)
T ss_dssp E
T ss_pred E
Confidence 4
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 411 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 6e-07
Identities = 60/346 (17%), Positives = 104/346 (30%), Gaps = 107/346 (30%)
Query: 38 FVNSVKKLQRREISS------KRDRAFTMTDAQERFRNIRLQEEYD-----THDPKGHCS 86
F + Q ++I S + F D Q+ ++I +EE D G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 87 MVLPFLRKRSKI----IEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSL 142
+ L K+ ++ +E V + F + + E Q ++ +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKF------LMSPIKTEQRQP---------SMMTRM 111
Query: 143 FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW------PG 196
+ + + V+A N R +R+ AL E K G
Sbjct: 112 YIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLG 160
Query: 197 FVEFDDVNGK-VLTYSAQDSI-------YKVF------------DLKNYTMLYSISDKN- 235
GK + S +K+F L+ L D N
Sbjct: 161 S-------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 236 VQEIKISPGIML-----------LIFTKASGHVPLKILS-IEDGTVLKSFNH-----LLH 278
S I L L+ +K + L +L +++ +FN L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 279 RNKKV-DFIE---------QFNEKLLVKQENENL--QILDVRNFEL 312
R K+V DF+ + L E ++L + LD R +L
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 411 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.9 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.89 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.89 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.89 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.88 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.88 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.88 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.87 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.87 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.87 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.87 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.86 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.86 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.86 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.85 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.85 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.85 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.85 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.85 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.85 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.85 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.85 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.85 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.85 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.85 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.85 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.85 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.84 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.84 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.84 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.84 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.84 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.84 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.84 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.84 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.83 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.83 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.83 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.83 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.83 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.83 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.83 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.83 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.83 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.82 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.82 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.82 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.82 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.82 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.82 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.82 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.82 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.82 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.82 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.82 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.82 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.82 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.81 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.81 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.81 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.81 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.81 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.81 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.81 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.81 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.8 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.8 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.79 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.79 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.79 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.79 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.78 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.78 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.78 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.78 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.78 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.77 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.77 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.77 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.77 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.77 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.77 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.77 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.76 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.76 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.76 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.75 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.75 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.75 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.75 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.75 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.75 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.75 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.75 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.74 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.74 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.74 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.74 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.73 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.73 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.73 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.73 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.71 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.7 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.7 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.7 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.69 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.68 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.68 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.68 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.68 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.67 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.67 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.66 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.66 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.66 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.65 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.65 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.64 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.63 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.62 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.62 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.59 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.58 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.58 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.57 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.57 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.54 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.54 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.51 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.5 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.49 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.49 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.47 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.47 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.45 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.41 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.39 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.35 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.35 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.34 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.34 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.25 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.24 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.24 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.24 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.23 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.23 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.23 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.22 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.21 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.19 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.17 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.15 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.12 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.1 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.1 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.08 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.07 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.04 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.01 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.01 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.0 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.0 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.99 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.98 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.96 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.92 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.87 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.84 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.84 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.82 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.79 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.76 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.76 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.7 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.69 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.69 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.68 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.63 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.62 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.59 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.59 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.59 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.58 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.51 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.5 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.48 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.44 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.44 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.43 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.41 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.4 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.33 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.29 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.29 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.28 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.25 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.24 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.2 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.16 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.14 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.11 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.06 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.06 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.05 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.03 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.99 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.98 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.97 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.96 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.93 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.9 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.89 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.89 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.86 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.84 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.78 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.77 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.76 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.67 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.63 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.6 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.55 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.53 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.47 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.46 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.46 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 97.45 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.44 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.43 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.39 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.33 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.31 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.26 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.14 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.12 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.03 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.93 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.81 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.8 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.69 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.63 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.56 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.38 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.32 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.29 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.93 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 95.87 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.84 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.83 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.8 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 95.8 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.75 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.7 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.65 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.38 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.28 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.24 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.22 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.16 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 94.86 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 94.84 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.78 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 94.77 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 94.74 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 94.4 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 94.37 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 94.33 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 94.07 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 93.93 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 93.77 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 93.55 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 93.4 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.25 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 93.18 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 92.96 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 92.92 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 92.89 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 92.44 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 92.34 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 92.15 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 92.08 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 91.65 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 91.57 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 91.44 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 91.29 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 90.61 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 90.49 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 90.29 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 89.91 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 89.78 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 89.43 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 88.33 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 88.31 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.58 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 85.47 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 84.88 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 82.03 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 81.32 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.83 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 80.81 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 80.48 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-21 Score=181.42 Aligned_cols=268 Identities=11% Similarity=0.157 Sum_probs=209.3
Q ss_pred cccceEEEeecc--ceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeee
Q 015220 94 KRSKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (411)
Q Consensus 94 ~RS~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 171 (411)
-+.+|.-+.+.. .+++.-...|...+||..+++.+..+.. +..-|.++-++...+-|++.| .|. .+ +.-+
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs---~D~--~i--~iwd 178 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS---ADM--TI--KLWD 178 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--CC--CEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEe---CCC--eE--EEEe
Confidence 456777777663 4677777889999999999998888875 455678998888776665533 222 22 2222
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCe---EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCE
Q 015220 172 IEYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGI 245 (411)
Q Consensus 172 ~~~i~~gk~~~~~~LF~~~~l~~Pgf---vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~ 245 (411)
+ ..++ .+-. .-.|.+. +.|. ++|..|++++.|+++++||+++.+++.++..+ .|..+..+ +|.
T Consensus 179 ~---~~~~-----~~~~--~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 179 F---QGFE-----CIRT--MHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247 (410)
T ss_dssp T---TSSC-----EEEC--CCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred C---CCCc-----eeEE--EcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence 1 1111 0100 0122322 3454 47888999999999999999999999998866 79999999 888
Q ss_pred EEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc----------------------eeEEeecCceee
Q 015220 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE----------------------KLLVKQENENLQ 303 (411)
Q Consensus 246 ~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e----------------------kllIKQe~~~Lk 303 (411)
+|+...... .|+||++.+++...+ +.+|..+|..+...++ .++....+..|+
T Consensus 248 ~l~s~s~D~---~v~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 248 LIASCSNDQ---TVRVWVVATKECKAE---LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp EEEEEETTS---CEEEEETTTCCEEEE---ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred EEEEEcCCC---eEEEEECCCCceeeE---ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 888776543 489999999999988 6689999999998874 356667889999
Q ss_pred EEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCC
Q 015220 304 ILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD 378 (411)
Q Consensus 304 I~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd 378 (411)
|||+.+++... +..+|...+..+..+ +.++|+ .|++|++||++ |+++.++.+|.. .+..+..+||+.
T Consensus 322 iwd~~~~~~~~---~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~ 393 (410)
T 1vyh_C 322 MWDVSTGMCLM---TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-----FVTSLDFHKTAP 393 (410)
T ss_dssp EEETTTTEEEE---EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-----CEEEEEECSSSS
T ss_pred EEECCCCceEE---EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-----cEEEEEEcCCCC
Confidence 99999999887 788899999888876 678888 78999999998 899999999988 799999999999
Q ss_pred EEEEEecCCCCCccccCCceEEEeee
Q 015220 379 LIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 379 ~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+|+|||.|. +|+|||+
T Consensus 394 ~l~sgs~D~----------~i~vW~~ 409 (410)
T 1vyh_C 394 YVVTGSVDQ----------TVKVWEC 409 (410)
T ss_dssp CEEEEETTS----------EEEEEC-
T ss_pred EEEEEeCCC----------cEEEEeC
Confidence 999999997 9999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=169.43 Aligned_cols=185 Identities=11% Similarity=0.125 Sum_probs=151.2
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
+|+.|+..+.|++++|||+++.+++.++..+ .|..+.++ +|.+|+....- --|+||+++++..+.. .+-+|.
T Consensus 66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D---~~v~lWd~~~~~~~~~--~~~~h~ 140 (304)
T 2ynn_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD---LTVKLWNWENNWALEQ--TFEGHE 140 (304)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT---SCEEEEEGGGTTEEEE--EECCCC
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCC---CeEEEEECCCCcchhh--hhcccC
Confidence 5677888999999999999999999999865 79999999 77777776543 3589999999955432 156899
Q ss_pred Ccceeeeeec-c--eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEEEE-ecCeEEEEecC-C
Q 015220 281 KKVDFIEQFN-E--KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFLTF-RNRTVAVWNFR-G 350 (411)
Q Consensus 281 K~I~FLE~~~-e--kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFlSf-sd~tI~iWn~~-G 350 (411)
.+|..+..++ + .+...+.+..+++||+.+++..... ...|...+.++... ++++|+ .|++|++||++ |
T Consensus 141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218 (304)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE--ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee--ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence 9999999987 3 3455678999999999887654411 12344555555432 578888 89999999999 9
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++.++++|.. .+..+..+||+.+|+||+.|. +|+|||+.||+++
T Consensus 219 ~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~Dg----------~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 219 SCVATLEGHMS-----NVSFAVFHPTLPIIISGSEDG----------TLKIWNSSTYKVE 263 (304)
T ss_dssp EEEEEEECCSS-----CEEEEEECSSSSEEEEEETTS----------CEEEEETTTCCEE
T ss_pred ccceeeCCCCC-----CEEEEEECCCCCEEEEEcCCC----------eEEEEECCCCcee
Confidence 99999999998 899999999999999999997 9999999999975
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-20 Score=168.53 Aligned_cols=260 Identities=14% Similarity=0.130 Sum_probs=200.5
Q ss_pred ceehhhhccccceeeecccccEEEEEe-CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN-~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
++++.-..-|...+|+..+++..+... .++..-|.++-++.....+++.| .+ ..++ .- ++..|+.-
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s----~D-~~i~--lW---d~~~~~~~--- 115 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS----LD-AHIR--LW---DLENGKQI--- 115 (321)
T ss_dssp CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE----TT-SEEE--EE---ETTTTEEE---
T ss_pred CEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe----CC-CcEE--EE---ECCCCCEE---
Confidence 366666778899999987777655332 35667788998888766555433 22 1222 22 22222210
Q ss_pred cceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEE
Q 015220 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKI 261 (411)
Q Consensus 185 ~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKI 261 (411)
.-+.... ...--+.|. ++|+.|+....++++++||+++.+.++++..+ .|..+.+| ||.+|++..... .|+|
T Consensus 116 ~~~~~~~-~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg---~i~i 190 (321)
T 3ow8_A 116 KSIDAGP-VDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG---IINI 190 (321)
T ss_dssp EEEECCT-TCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS---CEEE
T ss_pred EEEeCCC-ccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC---eEEE
Confidence 0011100 001124554 68999999999999999999999999888755 79999999 899888876544 4899
Q ss_pred EEecCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEE
Q 015220 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFL 336 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFl 336 (411)
|++.+|+++.+ +-+|..+|..+..++++.++. ..+..|+|||+.+++... +..+|...+..++.+ +.++
T Consensus 191 wd~~~~~~~~~---~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~sp~~~~l~ 264 (321)
T 3ow8_A 191 FDIATGKLLHT---LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG---TLSGHASWVLNVAFCPDDTHFV 264 (321)
T ss_dssp EETTTTEEEEE---ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEE
T ss_pred EECCCCcEEEE---EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE---EEcCCCCceEEEEECCCCCEEE
Confidence 99999999998 568999999999999876554 467889999999999887 788899999998876 6778
Q ss_pred EE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 337 TF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 337 Sf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
|. .|++|++||++ |+++.+|.+|.. .+..+..+|||..|+|++.|. +|+|||.
T Consensus 265 s~s~D~~v~iwd~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~s~~~d~----------~i~vwd~ 319 (321)
T 3ow8_A 265 SSSSDKSVKVWDVGTRTCVHTFFDHQD-----QVWGVKYNGNGSKIVSVGDDQ----------EIHIYDC 319 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTC----------CEEEEEC
T ss_pred EEeCCCcEEEEeCCCCEEEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCC----------eEEEEeC
Confidence 88 88999999999 999999999988 899999999999999999997 9999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=185.88 Aligned_cols=235 Identities=14% Similarity=0.254 Sum_probs=184.8
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe---EEeeCCCCeEEEe
Q 015220 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTY 210 (411)
Q Consensus 134 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf---vEFDd~NGkiLt~ 210 (411)
++..-|.++-++.....|++.| .|. .++.- ++..|++-. -| -.|.+. +.|+ ++|+.|++
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s---~Dg--~i~vw-----d~~~~~~~~---~l----~~h~~~V~~v~~~-~~~~~l~s 167 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSAS---EDA--TIKVW-----DYETGDFER---TL----KGHTDSVQDISFD-HSGKLLAS 167 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEE---SSS--CEEEE-----ETTTCCCCE---EE----CCCSSCEEEEEEC-TTSSEEEE
T ss_pred ccCCcEEEEEEcCCCCEEEEEe---CCC--eEEEE-----ECCCCcEEE---EE----eccCCcEEEEEEc-CCCCEEEE
Confidence 4556678888887666555533 222 22222 222332210 11 123333 5675 68999999
Q ss_pred ecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeee
Q 015220 211 SAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (411)
Q Consensus 211 ~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE 287 (411)
++.|++++|||+.+++++.++.++ .|..+.++ +|.+|+..... -.|+||++.+|+.+++ +-+|...|..+.
T Consensus 168 gs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D---~~i~~wd~~~~~~~~~---~~~h~~~v~~~~ 241 (410)
T 1vyh_C 168 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD---KTIKMWEVQTGYCVKT---FTGHREWVRMVR 241 (410)
T ss_dssp EETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT---SEEEEEETTTCCEEEE---EECCSSCEEEEE
T ss_pred EeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEE---EeCCCccEEEEE
Confidence 999999999999999999999865 89999999 77777776543 3589999999999998 568999999999
Q ss_pred eecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----------------------eeEEEE-ecC
Q 015220 288 QFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----------------------QLFLTF-RNR 341 (411)
Q Consensus 288 ~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----------------------qlFlSf-sd~ 341 (411)
.++++.++. +.+..+++||+.+++... +...|+..+.++..+ .+++|+ .|+
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCceee---EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 998876554 577899999999999887 777888888888764 368888 889
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|++||++ |.++.++.+|.. .++.+.++|||++|+||+.|. +|++||+.+|+|+
T Consensus 319 ~i~iwd~~~~~~~~~~~~h~~-----~v~~v~~~~~g~~l~s~s~D~----------~i~vwd~~~~~~~ 373 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGHDN-----WVRGVLFHSGGKFILSCADDK----------TLRVWDYKNKRCM 373 (410)
T ss_dssp EEEEEETTTTEEEEEEECCSS-----CEEEEEECSSSSCEEEEETTT----------EEEEECCTTSCCC
T ss_pred eEEEEECCCCceEEEEECCCC-----cEEEEEEcCCCCEEEEEeCCC----------eEEEEECCCCceE
Confidence 99999999 999999999988 789999999999999999997 9999999999874
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-21 Score=174.09 Aligned_cols=188 Identities=13% Similarity=0.173 Sum_probs=159.0
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeC-----ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN-----YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~-----Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
+.|...++..|++.+.|+++++||+.+ ..++.++.++ .|..+.++ ||.+|+....- --|+||++++|+.
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D---~~v~~wd~~~~~~ 99 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD---KTLRLWDVATGET 99 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTEE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC---CEEEEEECCCCCe
Confidence 456666778999999999999999975 2356777765 89999999 88888877644 3589999999999
Q ss_pred EeEeeeccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeece---------eEEEE
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ---------LFLTF 338 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sq---------lFlSf 338 (411)
+.+ +.+|..+|..+..+++..++ .+.+..+++||+... ... +..+|...+..+.... .+++.
T Consensus 100 ~~~---~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 100 YQR---FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLA---TLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp EEE---EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECCC------CCEEEEE
T ss_pred eEE---EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEE---EEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 998 66999999999999886544 457889999999754 333 6778988888877652 67777
Q ss_pred -ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 339 -RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 339 -sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|++|++||++ +.+..++.+|.. .++.+..+|||++|+|++.|. +|+|||+.+++++
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~sp~g~~l~s~~~dg----------~i~iwd~~~~~~~ 231 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFIGHNS-----NINTLTASPDGTLIASAGKDG----------EIMLWNLAAKKAM 231 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCCS-----CEEEEEECTTSSEEEEEETTC----------EEEEEETTTTEEE
T ss_pred eCCCEEEEEECCcchhheeecCCCC-----cEEEEEEcCCCCEEEEEeCCC----------eEEEEECCCCcEE
Confidence 89999999999 889999999998 899999999999999999997 9999999999875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-19 Score=165.76 Aligned_cols=271 Identities=12% Similarity=0.156 Sum_probs=199.6
Q ss_pred ccceEEEeeccc--eehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 95 RSKIIEIVAARD--IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 95 RS~V~EIv~a~d--ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
..+|..+-...| +++.-...|....||..+++.+..+.. +...|.++-++.....|++.| .|. . ++.-.
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~---~d~--~--v~iw~- 125 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG---LDN--I--CSIYN- 125 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEE---TTC--E--EEEEE-
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEe---CCC--e--EEEEE-
Confidence 345666655533 677777889999999999998887765 455678888888776665533 222 2 22222
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEE
Q 015220 173 EYIRRGKPDAGFALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIM 246 (411)
Q Consensus 173 ~~i~~gk~~~~~~LF~~~~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~ 246 (411)
+..++ +..-.....-.|.+.| .|. ++++ ++..+.|++++|||+++.+++.++..+ .|..+.++ +|.+
T Consensus 126 --~~~~~---~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 126 --LKTRE---GNVRVSRELAGHTGYLSCCRFL-DDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp --TTTCS---BSCEEEEEEECCSSCEEEEEEE-ETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred --CccCC---CcceeEEEecCCCccEEEEEEC-CCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 11111 1111122223455554 343 3455 667788999999999999999999865 79999999 7777
Q ss_pred EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCc
Q 015220 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPS 324 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hps 324 (411)
|+...... .|+||++.+|+.+.+ +-+|..+|..+..++++- +..+.+..|++||+.+++....- ..-.+..
T Consensus 199 l~sg~~d~---~v~~wd~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~~~ 271 (340)
T 1got_B 199 FVSGACDA---SAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIIC 271 (340)
T ss_dssp EEEEETTS---CEEEEETTTCSEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCS
T ss_pred EEEEeCCC---cEEEEECCCCeeEEE---EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-ccCCccc
Confidence 77765443 589999999999998 568999999999998765 44557889999999998876521 1112334
Q ss_pred eEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceE
Q 015220 325 AFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKL 399 (411)
Q Consensus 325 AfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI 399 (411)
.+..+..+ ++++++ .|++|++||.. ++++.+|.+|.. .+..+.++|||.+|+|||.|. +|
T Consensus 272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~s~D~----------~i 336 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-----RVSCLGVTDDGMAVATGSWDS----------FL 336 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSCEEEEETTS----------CE
T ss_pred ceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC-----cEEEEEEcCCCCEEEEEcCCc----------cE
Confidence 67777765 678888 88999999998 999999999998 899999999999999999997 99
Q ss_pred EEee
Q 015220 400 FVSL 403 (411)
Q Consensus 400 ~i~~ 403 (411)
+|||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-21 Score=177.59 Aligned_cols=187 Identities=18% Similarity=0.153 Sum_probs=162.5
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
.|. +++..+++.+.|+++++||+.+.+++.++..+ .+..+.+| ||.+|++.... -.++||++++|+...+
T Consensus 87 ~~~-~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d---g~v~i~~~~~~~~~~~--- 159 (321)
T 3ow8_A 87 DIS-HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV---GKVNIFGVESGKKEYS--- 159 (321)
T ss_dssp EEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTT---SEEEEEETTTCSEEEE---
T ss_pred EEC-CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCC---CcEEEEEcCCCceeEE---
Confidence 443 56788999999999999999999999998755 78889999 88888887543 3589999999999988
Q ss_pred ccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
+-.|...|..+..++++-+|. ..+..|+|||+.+++... +.-+|...+..+..+ ++++|+ .|++|++||++
T Consensus 160 ~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~ 236 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236 (321)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT
T ss_pred ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC
Confidence 557888999999998876554 568899999999999887 666788888777765 788888 78999999999
Q ss_pred -CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 -Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++++.++.+|.. .+..+..+|||.+|+|++.|. +|+|||+.+|+|+
T Consensus 237 ~~~~~~~~~~h~~-----~v~~~~~sp~~~~l~s~s~D~----------~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 237 HANLAGTLSGHAS-----WVLNVAFCPDDTHFVSSSSDK----------SVKVWDVGTRTCV 283 (321)
T ss_dssp TCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS----------CEEEEETTTTEEE
T ss_pred CcceeEEEcCCCC-----ceEEEEECCCCCEEEEEeCCC----------cEEEEeCCCCEEE
Confidence 999999999998 799999999999999999997 9999999999986
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.6e-21 Score=178.54 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=149.2
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec----c--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----D--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs----~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
+.|.. ++++ +..+.|++++|||+.+.+.+..+. + ..|..+.+| ||.+|+...... -|+||++++|+++
T Consensus 88 ~~~s~-d~~l-~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~---~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 88 LTWVG-ERGI-LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI---CIKVWDLAQQVVL 162 (344)
T ss_dssp EEEET-TTEE-EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE
T ss_pred EEEeC-CCeE-EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEE
Confidence 45654 5655 466789999999999987654433 3 379999999 899888876554 4899999999999
Q ss_pred eEeeeccccCCcceeeeeecce--eE-EeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCe
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEK--LL-VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRT 342 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ek--ll-IKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~t 342 (411)
++ +-+|+.+|..+..+++. +| -.+.+..|+|||+++++....- ....+...+..++.+ ++|+++ .|++
T Consensus 163 ~~---~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 163 SS---YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp EE---ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-C----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred EE---EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee-ecceeeccceeeeecCCCCcceEEeccCCc
Confidence 99 67999999999998765 33 3567899999999999877621 112233445566543 678888 7899
Q ss_pred EEEEecC-CceeeeeccccccCCCCccceEEEcCCC-CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 343 I~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|++||++ |+++.+|.+|.. .++.+..+||| .+|+|||.|. +|+|||+.+|+++
T Consensus 239 v~~wd~~~~~~~~~~~~h~~-----~v~~v~fsp~g~~~lasgs~D~----------~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQ-----CVTGLVFSPHSVPFLASLSEDC----------SLAVLDSSLSELF 293 (344)
T ss_dssp EEEEESCC--CCEEEECCSS-----CEEEEEECSSSSCCEEEEETTS----------CEEEECTTCCEEE
T ss_pred EEEEECCCCcEEEEEcCCCC-----CEEEEEEccCCCeEEEEEeCCC----------eEEEEECCCCcEE
Confidence 9999999 999999999998 89999999998 5899999997 9999999999975
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-20 Score=166.00 Aligned_cols=281 Identities=9% Similarity=0.038 Sum_probs=198.3
Q ss_pred ccceEEEeeccceehhhhccccceeeeccccc------EEEEEeCCCCceEEEEEeecC----C---CeEEEEEeEecCC
Q 015220 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQ------RICFLNVTADEVIRSLFYNKN----N---DSLITVSVYASDN 161 (411)
Q Consensus 95 RS~V~EIv~a~dii~~L~~sG~c~af~~~t~~------~ic~lN~s~~evIrsifyN~~----n---~slI~vSv~~sd~ 161 (411)
..+|.-+-...+++++-...|...+||..+++ .+..+. .+..-|.++-++.. . +-|++.| .|.
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~---~dg 91 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS---FSG 91 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE---TTS
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc---CCC
Confidence 34555555556777777888999999999988 555565 45566888888887 4 4444432 222
Q ss_pred CceeeeEeeehhhhhhCCCCCCCcceeeccc------CCCCeEEeeC---CCCeE-EEeecCCCeEEEEEeeC------c
Q 015220 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESL------KWPGFVEFDD---VNGKV-LTYSAQDSIYKVFDLKN------Y 225 (411)
Q Consensus 162 ~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l------~~PgfvEFDd---~NGki-Lt~~~~ds~ykVWdL~~------Y 225 (411)
.++...+. .++.....++..-... ...--+.|.. ++|.. |+....|+.++|||+.+ .
T Consensus 92 --~i~iw~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 92 --DLLFYRIT-----REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp --CEEEEEEE-----ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred --CEEEEEcc-----CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 33333322 2221010001111111 2233467773 57888 99999999999999999 6
Q ss_pred eEEE-----Eec---------cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc---CCcceeee
Q 015220 226 TMLY-----SIS---------DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR---NKKVDFIE 287 (411)
Q Consensus 226 s~iy-----sLs---------~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h---~K~I~FLE 287 (411)
+.+. ++. ...|..+.++ +| +|++.... -.|+||++.+++++.++...-+| ..+|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN---GTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT---SEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC---CcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 6655 663 4489999999 67 66665432 35999999999999985532237 89999999
Q ss_pred eecceeEEe--ecC---ceeeEEEcccceEEEeeccccC-------------CCceEEEEeec---eeEEEE-ecCeEEE
Q 015220 288 QFNEKLLVK--QEN---ENLQILDVRNFELTEVSRTEFM-------------TPSAFIFLYEN---QLFLTF-RNRTVAV 345 (411)
Q Consensus 288 ~~~ekllIK--Qe~---~~LkI~dL~t~e~~~v~~T~f~-------------hpsAfifLy~s---qlFlSf-sd~tI~i 345 (411)
.++++.++. ..+ ..|++||+.+++... +... |...+..+..+ ++++++ .|++|++
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIG---SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEE---EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccc---eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 987765444 455 789999999998877 4444 78888888875 677777 7999999
Q ss_pred EecC-Cceeeeec------cc---------------cccCCCCccceEEEcCCC----------CEEEEEecCCCCCccc
Q 015220 346 WNFR-GELVTSFE------DH---------------LLWHPDCNTNNIYITSDQ----------DLIISYCKADSDDPLA 393 (411)
Q Consensus 346 Wn~~-Gel~~s~e------~H---------------~~~~~~c~~n~i~Is~Dq----------d~iiS~~~d~~~~~~~ 393 (411)
||++ |+++.++. +| .. .++.+..+||| ++|++++.|.
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg------ 386 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP-----GVFDVKFLKKGWRSGMGADLNESLCCVCLDR------ 386 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC-----CEEEEEEECTTTSBSTTCTTSCEEEEEETTT------
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCC-----ceeEEEeccccccccccccccceEEEecCCC------
Confidence 9998 99999999 77 44 89999999999 7999999997
Q ss_pred cCCceEEEeeeccee
Q 015220 394 EGNGKLFVSLLMFVT 408 (411)
Q Consensus 394 ~~~gtI~i~~i~tGk 408 (411)
+|+|||+.+||
T Consensus 387 ----~i~iw~~~~g~ 397 (397)
T 1sq9_A 387 ----SIRWFREAGGK 397 (397)
T ss_dssp ----EEEEEEEEC--
T ss_pred ----cEEEEEcCCCC
Confidence 99999999997
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-20 Score=168.30 Aligned_cols=189 Identities=12% Similarity=0.112 Sum_probs=155.7
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
+.|. ++|..|++.+.|++++|||+.+.+++.++..+ .|..++++ +|.+|++.... -.|+||++++|+.+.+
T Consensus 19 ~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d---~~i~vwd~~~~~~~~~-- 92 (304)
T 2ynn_A 19 IDFH-PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD---FRIRVFNYNTGEKVVD-- 92 (304)
T ss_dssp EEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT---SEEEEEETTTCCEEEE--
T ss_pred EEEC-CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC---CEEEEEECCCCcEEEE--
Confidence 4554 57889999999999999999999999988854 79999999 88888877654 3589999999999998
Q ss_pred eccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEe
Q 015220 275 HLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn 347 (411)
+-+|+.+|..++.++++-++ .+.+..+++||+.++.... .+..+|...+.+++.+ ++|+|+ .|++|++||
T Consensus 93 -~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~--~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 93 -FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (304)
T ss_dssp -EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE--EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred -EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh--hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 56899999999999887544 5578899999999984332 2667899999998865 578888 899999999
Q ss_pred cC-Cceeeeecc-ccccCCCCccceEEEcC--CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 348 FR-GELVTSFED-HLLWHPDCNTNNIYITS--DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~-Gel~~s~e~-H~~~~~~c~~n~i~Is~--Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++ +.+..++.. |.. .++.+..+| |+.+|+||+.|. +|+|||+.+|+|+
T Consensus 170 ~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~s~D~----------~i~iWd~~~~~~~ 221 (304)
T 2ynn_A 170 LGQSTPNFTLTTGQER-----GVNYVDYYPLPDKPYMITASDDL----------TIKIWDYQTKSCV 221 (304)
T ss_dssp TTCSSCSEEEECCCTT-----CEEEEEECCSTTCCEEEEEETTS----------EEEEEETTTTEEE
T ss_pred CCCCCccceeccCCcC-----cEEEEEEEEcCCCCEEEEEcCCC----------eEEEEeCCCCccc
Confidence 98 776666554 333 567777765 888999999997 9999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-20 Score=170.50 Aligned_cols=191 Identities=12% Similarity=0.092 Sum_probs=161.9
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe-Ee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK-SF 273 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~-t~ 273 (411)
+.|. ++|+.|++.+.|++++|||+.+.+.+.++..+ .|..+.++ +|.+|+..... --++||++.+++... ..
T Consensus 61 ~~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iw~~~~~~~~~~~~ 136 (340)
T 1got_B 61 MHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD---NICSIYNLKTREGNVRVS 136 (340)
T ss_dssp EEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETT---CEEEEEETTTCSBSCEEE
T ss_pred EEEC-CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCC---CeEEEEECccCCCcceeE
Confidence 3453 58899999999999999999999999888755 79999999 88888877643 358999999875211 11
Q ss_pred eeccccCCcceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEec
Q 015220 274 NHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNF 348 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~ 348 (411)
..+.+|...|..+..++++. +....+..|++||+.+++... +..+|...+..+..+ ++++|+ .|++|++||+
T Consensus 137 ~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT---TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp EEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEE---EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 23668999999888877665 556788999999999999887 777899999998876 678888 7999999999
Q ss_pred C-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 349 ~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+ |.++.+|.+|.. .++.+..+|||.+|+||+.|. +|+|||+.+++++
T Consensus 214 ~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~d~----------~v~iwd~~~~~~~ 261 (340)
T 1got_B 214 REGMCRQTFTGHES-----DINAICFFPNGNAFATGSDDA----------TCRLFDLRADQEL 261 (340)
T ss_dssp TTCSEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS----------CEEEEETTTTEEE
T ss_pred CCCeeEEEEcCCcC-----CEEEEEEcCCCCEEEEEcCCC----------cEEEEECCCCcEE
Confidence 9 999999999988 899999999999999999997 9999999998764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=169.47 Aligned_cols=282 Identities=11% Similarity=0.144 Sum_probs=200.5
Q ss_pred ccceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 95 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
..+|.-+-.. ..+++.-..-|....||..+++.+..+...... |.++-|+.....|++.| .+ -.|+.-++
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~las~~----~d---~~v~iw~~ 137 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW-VMECAFAPNGQSVACGG----LD---SACSIFNL 137 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT-CCCCEECTTSSEEEECC----SS---SCCEEEEC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC-EEEEEECCCCCEEEEee----CC---CcEEEEEC
Confidence 3456655554 346777778899999999999998888765444 56777777776665532 22 12333322
Q ss_pred hhh--hhCCCCCCCcceeecccCCCCe---EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-----cC--ceeEEE
Q 015220 173 EYI--RRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DK--NVQEIK 240 (411)
Q Consensus 173 ~~i--~~gk~~~~~~LF~~~~l~~Pgf---vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-----~~--~VqeIk 240 (411)
+.. ..+. .++ ....-.|.++ +.|...++..|++++.|+++++||+++.+.+..+. ++ .|..+.
T Consensus 138 ~~~~~~~~~----~~~-~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 138 SSQADRDGN----MPV-SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp CCCSSCCCS----STT-CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred CCCccccCC----ccc-eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 211 1111 111 1111233443 34555567778889999999999999999988772 22 788888
Q ss_pred Ee--CCEEEEEEecCCCceeeEEEEec-CCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEe
Q 015220 241 IS--PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEV 315 (411)
Q Consensus 241 IS--dG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v 315 (411)
++ ++.+|+...... .|+|||+. +++.+.+ +-+|..+|..+..++++.++. +.+..|+|||+++++...+
T Consensus 213 ~~~~~~~~l~sgs~D~---~v~~wd~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 213 INSLNANMFISGSCDT---TVRLWDLRITSRAVRT---YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286 (380)
T ss_dssp ECSSSCCEEEEEETTS---CEEEEETTTTCCCCEE---ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred eecCCCCEEEEEECCC---eEEEEECCCCCcceEE---ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence 86 677777765543 58999998 5677777 668999999999999875444 5778999999999998873
Q ss_pred ecccc----CCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeeee----ccccccCCCCccceEEEcCCCCEEEE
Q 015220 316 SRTEF----MTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSF----EDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 316 ~~T~f----~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~----e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
-.... .+...+..++.+ ++++++ .|++|.+||.. |+.+.++ .+|.. .++.+..||||++|+|
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~-----~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-----RISCLGLSSDGSALCT 361 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC-----CCCEEEECSSSSEEEE
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC-----ceEEEEECCCCCEEEE
Confidence 22211 111224455544 778888 89999999998 9988888 67887 7999999999999999
Q ss_pred EecCCCCCccccCCceEEEeeecceeee
Q 015220 383 YCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 383 ~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
||.|. +|+|||+..++-+
T Consensus 362 gs~D~----------~i~iW~~~~~~~i 379 (380)
T 3iz6_a 362 GSWDK----------NLKIWAFSGHRKI 379 (380)
T ss_dssp ECTTS----------CEEEEECCSSSSC
T ss_pred eeCCC----------CEEEEecCCCccc
Confidence 99997 9999999887643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=166.53 Aligned_cols=185 Identities=14% Similarity=0.188 Sum_probs=153.3
Q ss_pred eCCCCeEEEeecCCCeEEEEEeeC-------ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 201 DDVNGKVLTYSAQDSIYKVFDLKN-------YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 201 Dd~NGkiLt~~~~ds~ykVWdL~~-------Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
...+|+.|++++.|++++|||+.+ ..++..+.++ .|..+.++ +|.+|+....- -.|+||++++|+.+
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D---~~v~lwd~~~~~~~ 111 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD---KTLRLWDLRTGTTY 111 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT---SEEEEEETTSSCEE
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC---CcEEEEECCCCcEE
Confidence 345899999999999999999975 3466777765 79999999 78888776543 35999999999999
Q ss_pred eEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-------------eeE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-------------QLF 335 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-------------qlF 335 (411)
++ +.+|+.+|..+..++++. +....+..|++||+....... ......|..++.++..+ ++|
T Consensus 112 ~~---~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 112 KR---FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS-SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187 (343)
T ss_dssp EE---EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEE-CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEE
T ss_pred EE---EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceee-eecccCCCceeeeeeeccccccccccCCCCCEE
Confidence 98 668999999999998764 445678999999998544433 23334688888888765 467
Q ss_pred EEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 336 LTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 336 lSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+++ .|++|++||.++.+..++.+|.. .++.+.++|||++|+||+.|. +|+|||+.+.
T Consensus 188 ~s~~~d~~i~iwd~~~~~~~~~~~h~~-----~v~~~~~s~~g~~l~sgs~dg----------~v~iwd~~~~ 245 (343)
T 2xzm_R 188 ASVGWDGRLKVWNTNFQIRYTFKAHES-----NVNHLSISPNGKYIATGGKDK----------KLLIWDILNL 245 (343)
T ss_dssp EEEETTSEEEEEETTTEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTC----------EEEEEESSCC
T ss_pred EEEcCCCEEEEEcCCCceeEEEcCccc-----cceEEEECCCCCEEEEEcCCC----------eEEEEECCCC
Confidence 888 89999999988999999999988 899999999999999999997 9999999543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-18 Score=150.95 Aligned_cols=276 Identities=8% Similarity=0.079 Sum_probs=185.8
Q ss_pred ceEEEeec---cceehhhhccccceeeeccccc-----EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeE
Q 015220 97 KIIEIVAA---RDIVFALAQSGVCAAFCRETNQ-----RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (411)
Q Consensus 97 ~V~EIv~a---~dii~~L~~sG~c~af~~~t~~-----~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr 168 (411)
.|..|-+. .++++--..-|....||..+++ ....+ ..+...|.++-++....-|++.| .|. .++..
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~---~d~--~i~~~ 113 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSDGQFALSGS---WDG--TLRLW 113 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTTSSEEEEEE---TTS--EEEEE
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCCCCEEEEEc---ccc--cceEE
Confidence 45554443 2455555666888889876543 22233 34567799999998777666543 232 22222
Q ss_pred eeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEecc--CceeEEEEe-C-
Q 015220 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISD--KNVQEIKIS-P- 243 (411)
Q Consensus 169 ~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs~--~~VqeIkIS-d- 243 (411)
.. ..+...........+.......+++..|++.+.|+.+++||+...... ..+.. +.|..++++ +
T Consensus 114 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 114 DL----------TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp ET----------TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred ee----------cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 11 112223333333344455556778888999999999999999886654 33332 378888888 2
Q ss_pred -CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeecccc
Q 015220 244 -GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEF 320 (411)
Q Consensus 244 -G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f 320 (411)
+.+++.... . -.|++|++.+++++.+ +.+|+.+|..+..++++-++. ..+..|++||+.+++... +.
T Consensus 184 ~~~~~~s~~~-d--~~i~i~d~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~---~~- 253 (340)
T 4aow_A 184 SNPIIVSCGW-D--KLVKVWNLANCKLKTN---HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY---TL- 253 (340)
T ss_dssp SSCEEEEEET-T--SCEEEEETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE---EE-
T ss_pred CCcEEEEEcC-C--CEEEEEECCCCceeeE---ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee---ee-
Confidence 334443322 2 2489999999999998 678999999999998866554 577899999999998876 22
Q ss_pred CCCceEEEEeec--eeEEEE-ecCeEEEEecC-Cceeeeecccccc----CCCCccceEEEcCCCCEEEEEecCCCCCcc
Q 015220 321 MTPSAFIFLYEN--QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLW----HPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (411)
Q Consensus 321 ~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~----~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~ 392 (411)
.+...+..+..+ ..+++. .|++|++||++ +.++.++..+... .....++.+..+|||++|+||+.|.
T Consensus 254 ~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg----- 328 (340)
T 4aow_A 254 DGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN----- 328 (340)
T ss_dssp ECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS-----
T ss_pred cCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC-----
Confidence 244556665554 445555 99999999999 6666676644322 1122788999999999999999997
Q ss_pred ccCCceEEEeeeccee
Q 015220 393 AEGNGKLFVSLLMFVT 408 (411)
Q Consensus 393 ~~~~gtI~i~~i~tGk 408 (411)
+|+|||+.||+
T Consensus 329 -----~v~iW~~~tGt 339 (340)
T 4aow_A 329 -----LVRVWQVTIGT 339 (340)
T ss_dssp -----CEEEEEEEC--
T ss_pred -----EEEEEeCCCcC
Confidence 99999999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-19 Score=160.94 Aligned_cols=189 Identities=18% Similarity=0.206 Sum_probs=159.6
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
+.|. ++|+.|++.+.|++++|||+.+.+.+..+..+ .|..+..+ +|.+|++.... -.|+||++++|+.+.+
T Consensus 29 ~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~-- 102 (312)
T 4ery_A 29 VKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD---KTLKIWDVSSGKCLKT-- 102 (312)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEE--
T ss_pred EEEC-CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC---CEEEEEECCCCcEEEE--
Confidence 4665 58899999999999999999999999999866 79999999 88888877543 3589999999999998
Q ss_pred eccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEec
Q 015220 275 HLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNF 348 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~ 348 (411)
+-+|..+|..+..+++.-++ ...+..|++||+.+++... +...|...+..+..+ ++++++ .|++|++||+
T Consensus 103 -~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 103 -LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp -EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred -EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 56899999999998876544 4578899999999999877 666788888887765 677887 7999999999
Q ss_pred C-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 349 ~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+ |+.+.++..+.. ..+..+..+|||+.|++++.|. +|++||+.+|+++
T Consensus 179 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~----------~i~iwd~~~~~~~ 227 (312)
T 4ery_A 179 ASGQCLKTLIDDDN----PPVSFVKFSPNGKYILAATLDN----------TLKLWDYSKGKCL 227 (312)
T ss_dssp TTCCEEEEECCSSC----CCEEEEEECTTSSEEEEEETTT----------EEEEEETTTTEEE
T ss_pred CCCceeeEEeccCC----CceEEEEECCCCCEEEEEcCCC----------eEEEEECCCCcEE
Confidence 9 888887654322 3688899999999999999987 9999999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-18 Score=149.01 Aligned_cols=269 Identities=14% Similarity=0.203 Sum_probs=197.2
Q ss_pred cceEEEeec-cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 015220 96 SKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (411)
Q Consensus 96 S~V~EIv~a-~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 174 (411)
.+|.-+... ...++.-...|....||..+++....+... ...|.++-++...+.|++.+ .|. ..+...+..
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~---~dg----~i~~~~~~~ 90 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGG---KDT----MINGVPLFA 90 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTTEEEEEE---TTS----CEEEEETTC
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-CccEEEEEECCCCCEEEEec---CCC----eEEEEEeee
Confidence 344444332 457777788899999999999888877755 56788998898777666643 222 223333333
Q ss_pred hhhCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEE
Q 015220 175 IRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIML 247 (411)
Q Consensus 175 i~~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~L 247 (411)
...++. +..- -.|.+ -+.| ++..|+....|+++++|| +.+.+..+..+ .|..+..+ ++.+|
T Consensus 91 ~~~~~~-----~~~~--~~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 91 TSGEDP-----LYTL--IGHQGNVCSLSF---QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp CTTSCC------CEE--CCCSSCEEEEEE---ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred cCCCCc-----ccch--hhcccCEEEEEe---cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 222221 1111 11222 2455 467889999999999999 77777777644 88888876 57777
Q ss_pred EEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 248 ai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
++..... .|++|+ +++.+..+. ..|..+|..+..++++. +....+..|++||+.+++... +...|...+
T Consensus 159 ~~~~~d~---~i~i~d--~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i 228 (313)
T 3odt_A 159 LTASADK---TIKLWQ--NDKVIKTFS--GIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLR---TYEGHESFV 228 (313)
T ss_dssp EEEETTS---CEEEEE--TTEEEEEEC--SSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCE
T ss_pred EEEECCC---CEEEEe--cCceEEEEe--ccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhh---hhhcCCceE
Confidence 7765443 489999 677777633 23889999999988765 556688899999999999887 666788888
Q ss_pred EEEeec--eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 327 IFLYEN--QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 327 ifLy~s--qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
..+..+ ..++++ .|++|++||++ |+++.++..|.. .+..+..+||++ +++++.|. +|.||
T Consensus 229 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~i~~~~~~~~~~-~~~~~~dg----------~i~iw 292 (313)
T 3odt_A 229 YCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAI-----SIWSVDCMSNGD-IIVGSSDN----------LVRIF 292 (313)
T ss_dssp EEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSS-----CEEEEEECTTSC-EEEEETTS----------CEEEE
T ss_pred EEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCc-----eEEEEEEccCCC-EEEEeCCC----------cEEEE
Confidence 888876 346666 89999999998 999999999987 799999999999 55688776 99999
Q ss_pred eecceeee
Q 015220 403 LLMFVTCK 410 (411)
Q Consensus 403 ~i~tGk~~ 410 (411)
|+.+|+++
T Consensus 293 ~~~~~~~~ 300 (313)
T 3odt_A 293 SQEKSRWA 300 (313)
T ss_dssp ESCGGGCC
T ss_pred eCCCCcee
Confidence 99999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-18 Score=162.69 Aligned_cols=262 Identities=14% Similarity=0.115 Sum_probs=193.0
Q ss_pred eecccccEEEEEeCCCCceEEEEEeec-CCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeE
Q 015220 120 FCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFV 198 (411)
Q Consensus 120 f~~~t~~~ic~lN~s~~evIrsifyN~-~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgfv 198 (411)
++ .+|+.+..+...+...|.+|=++. ..+-|++.| .|. ..+.-+++....+........+. --...--+
T Consensus 48 w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s---~dg----~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~ 117 (437)
T 3gre_A 48 GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGS---DQG----VIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQI 117 (437)
T ss_dssp GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEE---TTS----EEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEE
T ss_pred cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEec---CCc----eEEEeECcccccCcccceeeecc--CCCCEEEE
Confidence 54 678999999888888999999998 666665544 333 34444455544454222111111 11112245
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEee---CceEEEEeccCceeEEEEe-----------------CCEEEEEEecCCCcee
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDKNVQEIKIS-----------------PGIMLLIFTKASGHVP 258 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~---~Ys~iysLs~~~VqeIkIS-----------------dG~~Lai~q~t~~~ip 258 (411)
.|. ++|..|+..+.|++++|||+. +.+.+..+..+.|..+.++ +|.+|++.... -.
T Consensus 118 ~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~ 193 (437)
T 3gre_A 118 TMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL---SR 193 (437)
T ss_dssp EEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT---SE
T ss_pred EEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC---Ce
Confidence 777 589999999999999999995 6667776666666666655 37777776654 36
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccc-cCCCceEEEEeec---
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTE-FMTPSAFIFLYEN--- 332 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~-f~hpsAfifLy~s--- 332 (411)
|+||++.+++++.++.. ..|..+|..+..++++. +....+..|+|||+++++... +. +.|...+..+...
T Consensus 194 i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 194 VIIFDIRTLERLQIIEN-SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR---SWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp EEEEETTTCCEEEEEEC-CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE---EEBCTTCEEEEEEEECTTT
T ss_pred EEEEeCCCCeeeEEEcc-CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE---EEecCCCCceEEEEecccc
Confidence 89999999999999542 12789999999987764 455688899999999999887 43 3677888888332
Q ss_pred ----eeEEEE-ecCeEEEEecC-Cceeeeecccc------ccCCC---------------CccceEEEcCCCCEEEEEec
Q 015220 333 ----QLFLTF-RNRTVAVWNFR-GELVTSFEDHL------LWHPD---------------CNTNNIYITSDQDLIISYCK 385 (411)
Q Consensus 333 ----qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~------~~~~~---------------c~~n~i~Is~Dqd~iiS~~~ 385 (411)
++++++ .|++|++||++ |+.+.++.+|. .|.|+ -.+..+..+ |+++|+||+.
T Consensus 270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~ 348 (437)
T 3gre_A 270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA 348 (437)
T ss_dssp CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG
T ss_pred CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC
Confidence 478888 88999999999 99999999885 33332 237888999 8899999999
Q ss_pred CCCCCccccCCceEEEeeecceeee
Q 015220 386 ADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 386 d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|. +|.+||+.+|+++
T Consensus 349 d~----------~i~~wd~~~~~~~ 363 (437)
T 3gre_A 349 TS----------SIVMFSLNELSSS 363 (437)
T ss_dssp GT----------EEEEEETTCGGGC
T ss_pred CC----------eEEEEECCCcccc
Confidence 97 9999999999864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-19 Score=164.00 Aligned_cols=189 Identities=13% Similarity=0.242 Sum_probs=154.8
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
.| .++|+.|++.+.|+++||||+++.+++.++.++ .|..+.++ +|.+|+....-. .|+||++. |+.+.+
T Consensus 72 ~~-s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~---~i~vwd~~-~~~~~~--- 143 (319)
T 3frx_A 72 TL-TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK---TIKVWTIK-GQCLAT--- 143 (319)
T ss_dssp EE-CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTS---CEEEEETT-SCEEEE---
T ss_pred EE-CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECC-CCeEEE---
Confidence 34 368999999999999999999999999999865 89999999 788887766543 58999996 667777
Q ss_pred ccccCCcceeeeeecc--------eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeE
Q 015220 276 LLHRNKKVDFIEQFNE--------KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTV 343 (411)
Q Consensus 276 LL~h~K~I~FLE~~~e--------kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI 343 (411)
+.+|...|..+...+. .++-...+..|++||+.+++... +..+|...+..++.+ ++++|+ .|++|
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i 220 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA---DFIGHNSNINTLTASPDGTLIASAGKDGEI 220 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE---EECCCCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe---eecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 7899999999988874 45667789999999999998876 777899999999886 678888 78999
Q ss_pred EEEecC-Cceeeeeccccc-----cCC--------------------------------------CCccceEEEcCCCCE
Q 015220 344 AVWNFR-GELVTSFEDHLL-----WHP--------------------------------------DCNTNNIYITSDQDL 379 (411)
Q Consensus 344 ~iWn~~-Gel~~s~e~H~~-----~~~--------------------------------------~c~~n~i~Is~Dqd~ 379 (411)
++||++ +.++.++..|.. |+| ...+..++.||||++
T Consensus 221 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp EEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred EEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence 999999 877777765421 111 223457889999999
Q ss_pred EEEEecCCCCCccccCCceEEEeeeccee
Q 015220 380 IISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 380 iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|+||+.|. +|+|||+.|++
T Consensus 301 l~sg~~Dg----------~i~vWd~~t~~ 319 (319)
T 3frx_A 301 LFAGYTDN----------VIRVWQVMTAN 319 (319)
T ss_dssp EEEEETTS----------CEEEEEEEEC-
T ss_pred EEEeecCc----------eEEEEEEeecC
Confidence 99999987 99999999974
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=160.42 Aligned_cols=280 Identities=12% Similarity=0.169 Sum_probs=199.0
Q ss_pred ccceEEEeec------cceehhhhccccceeeecccccEEEEEeC----CCCceEEEEEeecCCC---eEEEEEeEecCC
Q 015220 95 RSKIIEIVAA------RDIVFALAQSGVCAAFCRETNQRICFLNV----TADEVIRSLFYNKNND---SLITVSVYASDN 161 (411)
Q Consensus 95 RS~V~EIv~a------~dii~~L~~sG~c~af~~~t~~~ic~lN~----s~~evIrsifyN~~n~---slI~vSv~~sd~ 161 (411)
..+|.-|-+. +..+++-...|....||..+++.+..+.. ..++-|.++-++...+ .++.+ ...|.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~--~~~dg 95 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV--AGSRG 95 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE--EETTC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE--ecCCC
Confidence 3455555554 45677778888899999998988776654 3557788988888754 34442 12232
Q ss_pred CceeeeEeeehhhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEe---c--c
Q 015220 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---S--D 233 (411)
Q Consensus 162 ~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysL---s--~ 233 (411)
.++.- ++..++ ++..-. .|.+ -+.|...+|..|+..+.|++++|||+++.+.+..+ . .
T Consensus 96 --~i~v~-----d~~~~~-----~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 96 --IIRII-----NPITMQ-----CIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp --EEEEE-----CTTTCC-----EEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred --EEEEE-----Echhce-----Eeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 22222 222222 222111 2333 45687779999999999999999999999999998 3 3
Q ss_pred CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee-------------------------eccccCCcceeee
Q 015220 234 KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-------------------------HLLHRNKKVDFIE 287 (411)
Q Consensus 234 ~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~-------------------------~LL~h~K~I~FLE 287 (411)
..|..+.++ +|.+|++.... -.|+||++.+++.+..+. .+.+|..+|..+.
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGMD---HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETT---SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred CceeEEEECCCCCEEEEecCC---CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 399999999 77777776543 368999999998776522 1223889999999
Q ss_pred eecceeEEeecCceeeEEEcccceEE-----------EeeccccCCCceEEEEee-----ceeEEEE-ecCeEEEEecC-
Q 015220 288 QFNEKLLVKQENENLQILDVRNFELT-----------EVSRTEFMTPSAFIFLYE-----NQLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 288 ~~~ekllIKQe~~~LkI~dL~t~e~~-----------~v~~T~f~hpsAfifLy~-----sqlFlSf-sd~tI~iWn~~- 349 (411)
..++.++....+..|++||+.+++.. ....+.-.|...+.++.. .++++++ .|++|++||++
T Consensus 239 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 239 WLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp EETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred EcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 99888888889999999999987541 111244445555444443 4677777 88999999999
Q ss_pred Cc----eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 350 GE----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 350 Ge----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
|+ ++.++.+|.. ...++.+..+|||++|++++.|. +|.|||+.|
T Consensus 319 ~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg----------~i~iwd~~~ 366 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKC---GAAIRQTSFSRDSSILIAVCDDA----------SIWRWDRLR 366 (366)
T ss_dssp SSGGGCEEEEECCTTC---CSCEEEEEECTTSSEEEEEETTS----------EEEEEEC--
T ss_pred CCCccccceEEccccc---CCceEEEEeCCCCCeEEEEeCCC----------EEEEEEecC
Confidence 66 4448888831 12899999999999999999997 999999875
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-18 Score=160.75 Aligned_cols=263 Identities=12% Similarity=0.148 Sum_probs=190.3
Q ss_pred ceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 185 (411)
..++.-..-|....||..+++....+.. +...|.++-|+.....+++.+ .|+ .|+.-+... ++. .+..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~lasg~---~d~----~i~v~~~~~---~~~-~~~~ 144 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIACGG---LDN----KCSVYPLTF---DKN-ENMA 144 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEEES---TTS----EEEEEECCC---CTT-CCSG
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEEee---CCC----CEEEEEEec---ccc-cccc
Confidence 3566667789999999999988877765 344577888888776665532 222 233332211 110 0100
Q ss_pred ceeecccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe---CCEEEEEEecCCCce
Q 015220 186 LFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS---PGIMLLIFTKASGHV 257 (411)
Q Consensus 186 LF~~~~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS---dG~~Lai~q~t~~~i 257 (411)
-.....-.|.+.| .|. +++..|+..+.|+++++||+++.+++.++..+ .|..+.++ +|.+|+......
T Consensus 145 ~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg--- 220 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK--- 220 (354)
T ss_dssp GGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS---
T ss_pred ccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC---
Confidence 0011112345544 454 46677778889999999999999999999865 78888887 467777775443
Q ss_pred eeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---
Q 015220 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--- 332 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--- 332 (411)
-+++|++.+|+.+.+ +-+|..+|..+..++++- .....+..+++||+++++...+-.. -.+...+..+..+
T Consensus 221 ~v~~wd~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 221 KAMVWDMRSGQCVQA---FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGASSVDFSLSG 296 (354)
T ss_dssp CEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTS
T ss_pred eEEEEECCCCcEEEE---ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCcccceeEEEEeCCC
Confidence 589999999999998 568999999999987765 4455788999999999876653211 1122344455544
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
++++++ .|++|++||+. |+++.++.+|.. .+..+..||||++|+||+.|. +|+||+
T Consensus 297 ~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~-----~v~~l~~spdg~~l~sgs~D~----------~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYNDYTINVWDVLKGSRVSILFGHEN-----RVSTLRVSPDGTAFCSGSWDH----------TLRVWA 354 (354)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCCSS-----CEEEEEECTTSSCEEEEETTS----------EEEEEC
T ss_pred CEEEEEECCCcEEEEECCCCceEEEEECCCC-----cEEEEEECCCCCEEEEEcCCC----------CEEecC
Confidence 677777 78899999997 999999999998 899999999999999999997 999996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-19 Score=182.34 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=168.8
Q ss_pred CCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCc-----eEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEE
Q 015220 193 KWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKI 261 (411)
Q Consensus 193 ~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Y-----s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKI 261 (411)
.|.+.| .|...++.+|++++.|++++|||+.+. .....+.+| .|..+.+| ||.+|++..... -|+|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg---~v~v 456 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG---ELRL 456 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS---EEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC---cEEE
Confidence 577755 577778899999999999999999863 345667755 79999999 899888876543 5899
Q ss_pred EEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----ee
Q 015220 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QL 334 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----ql 334 (411)
|++.+|+.+++ +.+|..+|..+..++++- +-.+.+..|+|||+.......+.....+|...+.++..+ ..
T Consensus 457 wd~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 457 WDLAAGVSTRR---FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EETTTTEEEEE---EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EECCCCcceeE---EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 99999999998 679999999999998765 445678999999998887777777777899999998875 36
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++|+ .|++|++||++ +.++.++.+|.. .++.+.++|||++|+|||.|. +|+|||+.+|+++
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~-----~v~~v~~spdg~~l~sg~~Dg----------~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTG-----YVSTVAVSPDGSLCASGGKDG----------VVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS----------BCEEEETTTTEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCC-----CEEEEEEeCCCCEEEEEeCCC----------eEEEEECCCCceE
Confidence 7888 79999999999 889999999998 899999999999999999997 9999999999875
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-18 Score=162.45 Aligned_cols=261 Identities=13% Similarity=0.117 Sum_probs=191.9
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
.++++.-...|.-.+||..+++.+..+. .+...|.++-++..+ .|++.| .|. .+ +.-+ +..|+
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s---~dg--~i--~vwd---~~~~~----- 194 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGS---TDR--TV--RVWD---IKKGC----- 194 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEE---TTS--CE--EEEE---TTTTE-----
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEe---CCC--CE--EEEE---CCCCc-----
Confidence 5677778888999999999999999887 566678888887655 333322 222 22 2222 22221
Q ss_pred cceeecccCCCCe---EEeeC-CCCeEEEeecCCCeEEEEEeeCceE-----------------------EEEeccCcee
Q 015220 185 ALFESESLKWPGF---VEFDD-VNGKVLTYSAQDSIYKVFDLKNYTM-----------------------LYSISDKNVQ 237 (411)
Q Consensus 185 ~LF~~~~l~~Pgf---vEFDd-~NGkiLt~~~~ds~ykVWdL~~Ys~-----------------------iysLs~~~Vq 237 (411)
++.. .-.|.+- +.|.. ++|..|+.+..|++++|||+.+.+. +..+.++...
T Consensus 195 ~~~~--~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 195 CTHV--FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp EEEE--ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred EEEE--ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 1111 0123433 35654 7889999999999999999998763 3445545322
Q ss_pred EEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eEEeecCceeeEEEcccceEEE
Q 015220 238 EIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTE 314 (411)
Q Consensus 238 eIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~ 314 (411)
-..++ +|.+|++..... .|+||++.+++.+.+ +-+|..+|..+..++++ ++....+..|++||+.+++...
T Consensus 273 v~~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 273 VRTVSGHGNIVVSGSYDN---TLIVWDVAQMKCLYI---LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp EEEEEEETTEEEEEETTS---CEEEEETTTTEEEEE---ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEcCCCCEEEEEeCCC---eEEEEECCCCcEEEE---ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 23334 555666665433 499999999999998 56899999999999874 4666678899999999999887
Q ss_pred eeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCc
Q 015220 315 VSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDP 391 (411)
Q Consensus 315 v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~ 391 (411)
+.-+|+..+.++..+ +.++++ .|++|++||++ +.....+. |.. ....+.+++|++++++|+ |.
T Consensus 347 ---~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~l~~~~-dg---- 412 (464)
T 3v7d_B 347 ---TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTN-----LSAITTFYVSDNILVSGS-EN---- 412 (464)
T ss_dssp ---EECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTT-----CCCEEEEEECSSEEEEEE-TT----
T ss_pred ---EEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCC-----CccEEEEEeCCCEEEEec-CC----
Confidence 777899999998877 667777 88999999999 66555542 333 577889999999999998 65
Q ss_pred cccCCceEEEeeecceeee
Q 015220 392 LAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 392 ~~~~~gtI~i~~i~tGk~~ 410 (411)
+|+|||+.+|+++
T Consensus 413 ------~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 413 ------QFNIYNLRSGKLV 425 (464)
T ss_dssp ------EEEEEETTTCCEE
T ss_pred ------eEEEEECCCCcEE
Confidence 9999999999986
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=162.91 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=189.6
Q ss_pred hccccceeeecccccEEEEEeCCC-----------------CceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 015220 112 AQSGVCAAFCRETNQRICFLNVTA-----------------DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (411)
Q Consensus 112 ~~sG~c~af~~~t~~~ic~lN~s~-----------------~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 174 (411)
...+....|+..+|+.+..+.... +..|+++-++....-|++.| .|. .+ +.-+
T Consensus 82 g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~---~d~--~i--~iwd--- 151 (393)
T 1erj_A 82 GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA---EDR--LI--RIWD--- 151 (393)
T ss_dssp ECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE---TTS--CE--EEEE---
T ss_pred EcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc---CCC--eE--EEEE---
Confidence 345778899999999888875422 22489999998776665533 222 22 2222
Q ss_pred hhhCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe--CCEEEE
Q 015220 175 IRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS--PGIMLL 248 (411)
Q Consensus 175 i~~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS--dG~~La 248 (411)
+..++ .+.. .-.|.+ -+.|. ++|+.|++.+.|+++++||+++.+++.++..+ .|..+.++ +|.+|+
T Consensus 152 ~~~~~-----~~~~--~~~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (393)
T 1erj_A 152 IENRK-----IVMI--LQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223 (393)
T ss_dssp TTTTE-----EEEE--ECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE
T ss_pred CCCCc-----EEEE--EccCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEE
Confidence 22211 1111 112333 24554 57888999999999999999999998888755 89999998 688888
Q ss_pred EEecCCCceeeEEEEecCCcEEeEee----eccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEE--------
Q 015220 249 IFTKASGHVPLKILSIEDGTVLKSFN----HLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTE-------- 314 (411)
Q Consensus 249 i~q~t~~~ipiKIl~I~tG~~L~t~~----~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~-------- 314 (411)
+..... .|+||++.+|+.+..+. ...+|..+|..+..++++.+| ...+..|++||+.+.+...
T Consensus 224 ~~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~ 300 (393)
T 1erj_A 224 AGSLDR---AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300 (393)
T ss_dssp EEETTS---CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred EEcCCC---cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence 776543 48999999999988753 225789999999999887544 4468899999998754321
Q ss_pred -eeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcC------CCCEEEE
Q 015220 315 -VSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS------DQDLIIS 382 (411)
Q Consensus 315 -v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~------Dqd~iiS 382 (411)
...+..+|...+..++.+ +.++|+ .|++|.+||.+ |+++.++.+|.. .+..+.+++ |+.+|+|
T Consensus 301 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~-----~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-----SVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSCTTCTTCEEEEE
T ss_pred cceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-----CEEEEEecCCcCcCCCCCEEEE
Confidence 122666888888888876 678888 78999999999 999999999998 788898876 7999999
Q ss_pred EecCCCCCccccCCceEEEeeecce
Q 015220 383 YCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 383 ~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|+.|. +|+|||+.+.
T Consensus 376 gs~Dg----------~i~iW~~~~~ 390 (393)
T 1erj_A 376 GSGDC----------KARIWKYKKI 390 (393)
T ss_dssp EETTS----------EEEEEEEEEC
T ss_pred ECCCC----------cEEECccccc
Confidence 99997 9999999764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-18 Score=165.96 Aligned_cols=267 Identities=13% Similarity=0.201 Sum_probs=198.3
Q ss_pred ccceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 95 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
...|..+.+. ...++.....|....|+. +++.+..+. ++..-|.++-++.....+++.| .|. .++.-..+-
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~---~d~--~i~~w~~~~ 334 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASAS---DDK--TVKLWNRNG 334 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEE---TTS--CEEEEETTS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEe-cCCCCeEEEEECCCCCEEEEEe---CCC--eEEEEeCCC
Confidence 3455555544 335666677788888884 567666654 4556678888888777776643 222 222211110
Q ss_pred hhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEE
Q 015220 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIM 246 (411)
Q Consensus 173 ~~i~~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~ 246 (411)
+.++. + -.|++ -+.| .++|+.|+....+++++|||. +.+++.++..+ .|..+.+| ||.+
T Consensus 335 ~~~~~---------~----~~~~~~v~~~~~-s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~ 399 (577)
T 2ymu_A 335 QHLQT---------L----TGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 399 (577)
T ss_dssp CEEEE---------E----CCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSC
T ss_pred CeeEE---------E----eCCCCCEEEEEE-CCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCE
Confidence 01100 0 01111 2344 368999999999999999995 56788888754 89999999 8888
Q ss_pred EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCc
Q 015220 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPS 324 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hps 324 (411)
|++..... -|+||+ .+|+.+.+ +-+|..+|..+..+++..++ ..++..|++||+ +++... ++.+|+.
T Consensus 400 l~~~~~d~---~v~~~~-~~~~~~~~---~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~---~~~~~~~ 468 (577)
T 2ymu_A 400 IASASDDK---TVKLWN-RNGQLLQT---LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSS 468 (577)
T ss_dssp EEEEETTS---EEEEEC-TTCCEEEE---EECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEE---EEECCSS
T ss_pred EEEEeCCC---EEEEEe-CCCCEEEE---ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEE---EEcCCCC
Confidence 88775443 589999 57899888 66899999999999876544 467889999996 666665 7778999
Q ss_pred eEEEEeec---eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEE
Q 015220 325 AFIFLYEN---QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLF 400 (411)
Q Consensus 325 AfifLy~s---qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~ 400 (411)
.+..++.+ +++++. .|++|++||..|+++.+|++|.. .++.++.||||++|+|++.|. +|+
T Consensus 469 ~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~-----~v~~l~~s~dg~~l~s~~~dg----------~v~ 533 (577)
T 2ymu_A 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDK----------TVK 533 (577)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSS-----CEEEEEECTTSSCEEEEETTS----------EEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCC-----CEEEEEEcCCCCEEEEEECcC----------EEE
Confidence 99998876 778887 78999999999999999999988 899999999999999999987 999
Q ss_pred Eeeecceeee
Q 015220 401 VSLLMFVTCK 410 (411)
Q Consensus 401 i~~i~tGk~~ 410 (411)
||| .+|+++
T Consensus 534 lwd-~~~~~~ 542 (577)
T 2ymu_A 534 LWN-RNGQLL 542 (577)
T ss_dssp EEC-TTSCEE
T ss_pred EEe-CCCCEE
Confidence 999 478764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=173.26 Aligned_cols=190 Identities=12% Similarity=0.074 Sum_probs=157.6
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe----Eeee
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK----SFNH 275 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~----t~~~ 275 (411)
++|+.|++.+.|++++|||+.+.+.+.++..+ .|..+.++ +|.+|+.... ---++||++.++.... ....
T Consensus 76 p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~---d~~v~iw~~~~~~~~~~~~~~~~~ 152 (380)
T 3iz6_a 76 PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGL---DSACSIFNLSSQADRDGNMPVSRV 152 (380)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCS---SSCCEEEECCCCSSCCCSSTTCCB
T ss_pred CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeC---CCcEEEEECCCCccccCCccceee
Confidence 47888999999999999999999999888865 89999999 8888887653 3468999998654211 1112
Q ss_pred ccccCCcceeeeeecc---eeEEeecCceeeEEEcccceEEEeecc--ccCCCceEEEEeec----eeEEEE-ecCeEEE
Q 015220 276 LLHRNKKVDFIEQFNE---KLLVKQENENLQILDVRNFELTEVSRT--EFMTPSAFIFLYEN----QLFLTF-RNRTVAV 345 (411)
Q Consensus 276 LL~h~K~I~FLE~~~e---kllIKQe~~~LkI~dL~t~e~~~v~~T--~f~hpsAfifLy~s----qlFlSf-sd~tI~i 345 (411)
+-+|+..|..+..+++ .++-.+.+..|++||+.+++...+-.. ..+|...+..+..+ ++|+|+ .|++|++
T Consensus 153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232 (380)
T ss_dssp CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence 6689998888887764 367778999999999999998874322 25688888888764 689999 7999999
Q ss_pred EecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 346 WNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 346 Wn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
||++ +..+.++.+|.. .++.+..+|||+.|+|||.|. +|+|||+.+|+++
T Consensus 233 wd~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~----------~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 233 WDLRITSRAVRTYHGHEG-----DINSVKFFPDGQRFGTGSDDG----------TCRLFDMRTGHQL 284 (380)
T ss_dssp EETTTTCCCCEEECCCSS-----CCCEEEECTTSSEEEEECSSS----------CEEEEETTTTEEE
T ss_pred EECCCCCcceEEECCcCC-----CeEEEEEecCCCeEEEEcCCC----------eEEEEECCCCcEE
Confidence 9997 578999999999 899999999999999999997 9999999999875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-19 Score=167.48 Aligned_cols=184 Identities=11% Similarity=0.092 Sum_probs=145.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CC-EEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG-~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
++|+.|++.+.|++++|||+++.+++.++..+ .|..+.++ +| .+|+....-+ -|+|||+.+|+.+.++.. -+
T Consensus 137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~-~~ 212 (344)
T 4gqb_B 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDN---RILLWDTRCPKPASQIGC-SA 212 (344)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTS---CEEEEETTSSSCEEECC----
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccc---ccccccccccceeeeeec-ce
Confidence 47889999999999999999999999999965 89999998 55 3555543322 489999999999998542 34
Q ss_pred cCCcceeeeeecc-e-eE-EeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC-
Q 015220 279 RNKKVDFIEQFNE-K-LL-VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 279 h~K~I~FLE~~~e-k-ll-IKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~- 349 (411)
+...+..+..+++ . ++ ...++..|+|||+++++... ++-+|..++..++.+ ++++|+ .|++|+|||.+
T Consensus 213 ~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~---~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 213 PGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL---SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp -CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE---EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred eeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE---EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 5556777888763 3 33 34678999999999999887 788899999999875 568888 78999999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCC-EEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|+++ .+.+|.. .++.+..|||++ +++|++.|. +|++|++.+..+
T Consensus 290 ~~~~-~~~~H~~-----~V~~v~~sp~~~~llas~s~D~----------~v~~w~v~~~~~ 334 (344)
T 4gqb_B 290 SELF-RSQAHRD-----FVRDATWSPLNHSLLTTVGWDH----------QVVHHVVPTEPL 334 (344)
T ss_dssp CEEE-EECCCSS-----CEEEEEECSSSTTEEEEEETTS----------CEEEEECCC---
T ss_pred CcEE-EEcCCCC-----CEEEEEEeCCCCeEEEEEcCCC----------eEEEEECCCCCC
Confidence 7765 5789998 799999999986 677999997 999999988764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-18 Score=167.43 Aligned_cols=260 Identities=14% Similarity=0.223 Sum_probs=193.6
Q ss_pred cceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 015220 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (411)
Q Consensus 96 S~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 173 (411)
..|..+.+. ...++.-...|....||..+.+ +-.+ ..+..-|.++-++.....|++.+ .|. .++....
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~-~~~~~~v~~~~~s~~g~~l~~~~---~dg--~v~~~~~--- 373 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTL-TGHSSSVWGVAFSPDGQTIASAS---DDK--TVKLWNR--- 373 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEE-CCCSSCEEEEEECTTSSEEEEEE---TTS--EEEEEET---
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEE-eCCCCCEEEEEECCCCCEEEEEe---CCC--EEEEEcC---
Confidence 445555444 3456666677888888865433 3333 34556778888888777766533 222 2322211
Q ss_pred hhhhCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEE
Q 015220 174 YIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIML 247 (411)
Q Consensus 174 ~i~~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~L 247 (411)
.|+ +..+. ..|++ -+.|. ++|+.|+....|++++|||. +.+++.++..+ .|..+.+| |+.+|
T Consensus 374 ---~~~------~~~~~-~~~~~~v~~~~~s-~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l 441 (577)
T 2ymu_A 374 ---NGQ------LLQTL-TGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTI 441 (577)
T ss_dssp ---TCC------EEEEE-ECCSSCEEEEEEC-TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ---CCC------EEEEe-cCCCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 111 11111 11222 34564 68899999999999999995 67888888765 89999999 88888
Q ss_pred EEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCce
Q 015220 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSA 325 (411)
Q Consensus 248 ai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsA 325 (411)
++..... .++||++ +|+.+.+ +.+|..+|..+..++++-+|+ .++..|+|||. +++... +..+|...
T Consensus 442 ~~~~~d~---~v~~w~~-~~~~~~~---~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~---~~~~h~~~ 510 (577)
T 2ymu_A 442 ASASDDK---TVKLWNR-NGQLLQT---LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSS 510 (577)
T ss_dssp EEEETTS---EEEEEET-TSCEEEE---EECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEE---EEECCSSC
T ss_pred EEEcCCC---EEEEEEC-CCCEEEE---EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE---EEeCCCCC
Confidence 8765443 4899995 7888888 668999999999999876555 57889999995 777776 77789999
Q ss_pred EEEEeec---eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEE
Q 015220 326 FIFLYEN---QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFV 401 (411)
Q Consensus 326 fifLy~s---qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i 401 (411)
+..++.+ ++++|. .|++|++||..|+++.+|.+|.. .+..+..||||++|+|++.|. +|.+
T Consensus 511 v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~-----~v~~~~fs~dg~~l~s~~~D~----------~i~~ 575 (577)
T 2ymu_A 511 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-----SVWGVAFSPDGQTIASASSDK----------TVKL 575 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSS-----CEEEEEECTTSSCEEEEETTS----------CEEE
T ss_pred EEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCC----------EEEE
Confidence 9999876 677777 78999999999999999999998 899999999999999999997 9999
Q ss_pred ee
Q 015220 402 SL 403 (411)
Q Consensus 402 ~~ 403 (411)
||
T Consensus 576 Wd 577 (577)
T 2ymu_A 576 WN 577 (577)
T ss_dssp EC
T ss_pred eC
Confidence 98
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-19 Score=152.66 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=153.3
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCc----eEEEEeccC--ceeEEEEeC---CEEEEEEecCCCceeeEEEEecCC-
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSISDK--NVQEIKISP---GIMLLIFTKASGHVPLKILSIEDG- 267 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Y----s~iysLs~~--~VqeIkISd---G~~Lai~q~t~~~ipiKIl~I~tG- 267 (411)
+.|+ ++|+.|+.++.|++++|||+.+. +++..+..+ .|..+..++ |.+|++..... .|+||++.+|
T Consensus 17 ~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg---~v~vwd~~~~~ 92 (351)
T 3f3f_A 17 VVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK---TVKLWEEDPDQ 92 (351)
T ss_dssp EEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS---CEEEEEECTTS
T ss_pred EEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC---eEEEEecCCCc
Confidence 4565 48999999999999999999976 466666644 899999995 88888876543 5899999998
Q ss_pred --------cEEeEeeeccccCCcceeeeeecc----eeEEeecCceeeEEEcccceEEE---------------------
Q 015220 268 --------TVLKSFNHLLHRNKKVDFIEQFNE----KLLVKQENENLQILDVRNFELTE--------------------- 314 (411)
Q Consensus 268 --------~~L~t~~~LL~h~K~I~FLE~~~e----kllIKQe~~~LkI~dL~t~e~~~--------------------- 314 (411)
+.+.+ +.+|..+|..+..+++ .++....+..|++||+.+++...
T Consensus 93 ~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 93 EECSGRRWNKLCT---LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp CTTSSCSEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred ccccccCcceeee---ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 44555 6689999999999986 35666788999999998765211
Q ss_pred ------------------------------------eeccccCCCceEEEEeec-------eeEEEE-ecCeEEEEecC-
Q 015220 315 ------------------------------------VSRTEFMTPSAFIFLYEN-------QLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 315 ------------------------------------v~~T~f~hpsAfifLy~s-------qlFlSf-sd~tI~iWn~~- 349 (411)
.-.+.-+|+..+..++.+ ++++|+ .|++|++||++
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 122444688888887755 468888 78999999998
Q ss_pred C----------------------------------------------ceeeeeccccccCCCCccceEEEcCCCCEEEEE
Q 015220 350 G----------------------------------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 350 G----------------------------------------------el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
+ +++.++.+|.. .++.+..+|||++|+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 250 KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-----EVWSVSWNLTGTILSSA 324 (351)
T ss_dssp CC---------------------------------------CCSEEEEEEEEECTTSS-----CEEEEEECSSSCCEEEE
T ss_pred CcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc-----cEEEEEEcCCCCEEEEe
Confidence 4 78889999988 89999999999999999
Q ss_pred ecCCCCCccccCCceEEEeeecceee
Q 015220 384 CKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 384 ~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.|. +|+|||+.+|+.
T Consensus 325 ~~dg----------~v~iw~~~~~~~ 340 (351)
T 3f3f_A 325 GDDG----------KVRLWKATYSNE 340 (351)
T ss_dssp ETTS----------CEEEEEECTTSC
T ss_pred cCCC----------cEEEEecCcCcc
Confidence 9997 999999999854
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=170.22 Aligned_cols=189 Identities=14% Similarity=0.210 Sum_probs=155.3
Q ss_pred EEeeCCCCeEEE--eecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 198 VEFDDVNGKVLT--YSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 198 vEFDd~NGkiLt--~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
|-|- +||+.|+ ++..|+++||||+++.++++++.++ +|..+.+| ||.+|+..... .+.+|+..+|+.+...
T Consensus 139 v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~----~~~~~~~~~~~~~~~~ 213 (365)
T 4h5i_A 139 VYIS-REGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS----SLEVISTVTGSCIARK 213 (365)
T ss_dssp EEEC-TTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS----CEEEEETTTCCEEEEE
T ss_pred EEEc-CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce----eEEEEEeccCcceeee
Confidence 4553 5787653 5557999999999999999999865 89999999 89988887532 4789999999988764
Q ss_pred eeccccCCcceeeeeecceeEEee--cCc----eeeEEEcccceEEE-eeccccCCCceEEEEeec---eeEEEE-ecCe
Q 015220 274 NHLLHRNKKVDFIEQFNEKLLVKQ--ENE----NLQILDVRNFELTE-VSRTEFMTPSAFIFLYEN---QLFLTF-RNRT 342 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekllIKQ--e~~----~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~s---qlFlSf-sd~t 342 (411)
. +.+|...|..+..++++.++.. .+. .+++||+..+.... ...+..+|..++.+++.+ ++++++ .|++
T Consensus 214 ~-~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~ 292 (365)
T 4h5i_A 214 T-DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS 292 (365)
T ss_dssp C-CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred e-cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence 3 5678889999999998775544 223 68999999877544 234667789999999987 778888 7899
Q ss_pred EEEEecC-Cceeee-eccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 343 VAVWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 343 I~iWn~~-Gel~~s-~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|+|||.+ |+++.+ +++|.. .++.|+.||||++|+|||.|. ||+||||.++
T Consensus 293 V~iwd~~~~~~~~~~~~gH~~-----~V~~v~fSpdg~~laS~S~D~----------tvrvw~ip~~ 344 (365)
T 4h5i_A 293 IALVKLKDLSMSKIFKQAHSF-----AITEVTISPDSTYVASVSAAN----------TIHIIKLPLN 344 (365)
T ss_dssp EEEEETTTTEEEEEETTSSSS-----CEEEEEECTTSCEEEEEETTS----------EEEEEECCTT
T ss_pred EEEEECCCCcEEEEecCcccC-----CEEEEEECCCCCEEEEEeCCC----------eEEEEEcCCC
Confidence 9999998 999987 589999 899999999999999999998 9999999643
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-18 Score=159.21 Aligned_cols=260 Identities=10% Similarity=0.074 Sum_probs=194.8
Q ss_pred ceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 185 (411)
+.+++.+..|....||..+++....+...+...|.++-++...+-|++.+ .|. .++.- ++..++ .
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~---~dg--~i~iw-----d~~~~~-----~ 168 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL---GNG--LVDIY-----DVESQT-----K 168 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE---TTS--CEEEE-----ETTTCC-----E
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC---CCC--eEEEE-----ECcCCe-----E
Confidence 44666778899999999999999999988889999999999666555533 222 22222 122221 1
Q ss_pred ceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEee-CceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCcee
Q 015220 186 LFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 186 LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~-~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ip 258 (411)
+..- -.|.+ -+.| ++..|+.+..|+++++||++ ..+.+..+..+ .|..+.++ +|.+|++..... .
T Consensus 169 ~~~~--~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~ 240 (401)
T 4aez_A 169 LRTM--AGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN---V 240 (401)
T ss_dssp EEEE--CCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS---C
T ss_pred EEEe--cCCCCceEEEEE---CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC---e
Confidence 1111 02222 2344 56899999999999999999 46667777654 89999999 888888876543 5
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeecce-eEEee----cCceeeEEEcccceEEEeeccccCCCceEEEEeec-
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK-LLVKQ----ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN- 332 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek-llIKQ----e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s- 332 (411)
|+||++.+++.+.+ +.+|..+|..+..++++ .++.. .+..|++||+.+++... +. .++..+..+..+
T Consensus 241 v~iwd~~~~~~~~~---~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~---~~-~~~~~v~~~~~s~ 313 (401)
T 4aez_A 241 VQIWDARSSIPKFT---KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN---TV-DAGSQVTSLIWSP 313 (401)
T ss_dssp EEEEETTCSSEEEE---ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE---EE-ECSSCEEEEEECS
T ss_pred EEEccCCCCCccEE---ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE---EE-eCCCcEEEEEECC
Confidence 89999999999998 56899999999999843 34443 48999999999999886 22 366777777765
Q ss_pred --eeEEE--E-ecCeEEEEecC-Cceee--eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 333 --QLFLT--F-RNRTVAVWNFR-GELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 333 --qlFlS--f-sd~tI~iWn~~-Gel~~--s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+.+++ + .|++|.+|+++ |++.. .+.+|.. .+..+..+|||.+|++++.|. +|.+||+
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~~~dg----------~i~iw~~ 378 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT-----RVLYSALSPDGRILSTAASDE----------NLKFWRV 378 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS-----CCCEEEECTTSSEEEEECTTS----------EEEEEEC
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC-----CEEEEEECCCCCEEEEEeCCC----------cEEEEEC
Confidence 45555 3 69999999999 65554 5778988 899999999999999999987 9999999
Q ss_pred cceeee
Q 015220 405 MFVTCK 410 (411)
Q Consensus 405 ~tGk~~ 410 (411)
.+|+++
T Consensus 379 ~~~~~~ 384 (401)
T 4aez_A 379 YDGDHV 384 (401)
T ss_dssp CC----
T ss_pred CCCccc
Confidence 999875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-18 Score=161.73 Aligned_cols=262 Identities=12% Similarity=0.137 Sum_probs=193.9
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
.+.++.-...|...+||..+++.+..+.. +..-|.++-++ ++.+++.| .|. .++.-. +..|+
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~~---~dg--~i~vwd-----~~~~~----- 190 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DNIIISGS---TDR--TLKVWN-----AETGE----- 190 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TTEEEEEE---TTS--CEEEEE-----TTTTE-----
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEec--CCEEEEEe---CCC--eEEEEE-----CCcCc-----
Confidence 56777788899999999999999888874 45566777776 34444422 222 222222 12221
Q ss_pred cceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEE
Q 015220 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 185 ~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl 262 (411)
++.. .-.|.+-|.-=..++..++.++.|++++|||+.+.+++.++..+ .|..+.. +|..|++.... -.|++|
T Consensus 191 ~~~~--~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d---g~i~iw 264 (445)
T 2ovr_B 191 CIHT--LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYD---FMVKVW 264 (445)
T ss_dssp EEEE--ECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETT---SCEEEE
T ss_pred EEEE--ECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEEcCC---CEEEEE
Confidence 1111 01233333222224667889999999999999999999998865 7777777 66666666543 358999
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ec
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RN 340 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd 340 (411)
++.+++++++ +-+|..+|..+...+..++....+..|++||+.+++... +..+|...+..+..+ +.++++ .|
T Consensus 265 d~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~l~~~~~d 338 (445)
T 2ovr_B 265 DPETETCLHT---LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMELKDNILVSGNAD 338 (445)
T ss_dssp EGGGTEEEEE---ECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEE---EECCCCSCEEEEEEETTEEEEEETT
T ss_pred ECCCCcEeEE---ecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEE---EEcCCcccEEEEEEeCCEEEEEeCC
Confidence 9999999999 558899999999977788888999999999999999887 777788888777765 667777 79
Q ss_pred CeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 341 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 341 ~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++|++||++ |+++.++.+|.. ....+..+.. |+++|++|+.|. +|+|||+.+|+++
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~s~~~dg----------~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNK--HQSAVTCLQF--NKNFVITSSDDG----------TVKLWDLKTGEFI 395 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTS--CSSCEEEEEE--CSSEEEEEETTS----------EEEEEETTTCCEE
T ss_pred CeEEEEECCCCcEEEEEccCCC--CCCCEEEEEE--CCCEEEEEeCCC----------eEEEEECCCCcee
Confidence 999999998 999999998432 1115666655 689999999986 9999999999875
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-19 Score=166.00 Aligned_cols=245 Identities=13% Similarity=0.107 Sum_probs=168.3
Q ss_pred CCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEee
Q 015220 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYS 211 (411)
Q Consensus 135 ~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~ 211 (411)
++.-|.++=|+....-|.+.| ++...+-=.++.+=....|.+.. -+......|.+ -+.|.. +|+.|+.
T Consensus 41 H~~~V~~v~fSpDG~~las~s----~d~~~~wd~~v~~~~~~~~~~~~---~~~~~~~~~~~~V~~~~~s~-d~~~l~~- 111 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAAS----SLSSRTWGGSIWVFKDPEGAPNE---SLCTAGVQTEAGVTDVAWVS-EKGILVA- 111 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEE----CSSSSSCCEEEEEESSCC---CG---GGCSEEEECSSCEEEEEEET-TTEEEEE-
T ss_pred ccCCEEEEEECCCCCEEEEEc----CCCCccccCeEEEEECCCCCcce---eEecccCCCCCCEEEEEEcC-CCCEEEE-
Confidence 667899999998777666644 22111100111111111222111 11111222332 245664 5777764
Q ss_pred cCCCeEEEEEeeCceEEEE----ecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcce
Q 015220 212 AQDSIYKVFDLKNYTMLYS----ISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys~iys----Ls~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~ 284 (411)
+.|++++|||+.+.+.+.. ..+ ..|..+.+| ||.+|+...... .|+||++++|+++.+ +-+|+.+|.
T Consensus 112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg---~v~iwd~~~~~~~~~---~~~h~~~v~ 185 (357)
T 4g56_B 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF---SVKVWDLSQKAVLKS---YNAHSSEVN 185 (357)
T ss_dssp ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTTEEEEE---ECCCSSCEE
T ss_pred ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEEEE---EcCCCCCEE
Confidence 5689999999999876532 323 379999999 888888876544 389999999999999 568999999
Q ss_pred eeeeecce--e-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC-Cceeee
Q 015220 285 FIEQFNEK--L-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR-GELVTS 355 (411)
Q Consensus 285 FLE~~~ek--l-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~-Gel~~s 355 (411)
.++.++++ + +...++..|+|||+.+++..... +...+...+..++.+ ++|+++ .|++|++||++ |+++.+
T Consensus 186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC-CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred EEEEccCCCceeeeeccCCceEEEECCCCceeeee-eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 99998764 3 45567889999999999876521 333466777777754 678887 78999999999 999999
Q ss_pred eccccccCCCCccceEEEcCCC-CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.+|.. .++.+..|||+ .+|+|||.|. +|+|||+.+|+++
T Consensus 265 ~~~~~~-----~v~~l~~sp~~~~~lasgs~D~----------~i~iwd~~~~~~~ 305 (357)
T 4g56_B 265 SAVHSQ-----NITGLAYSYHSSPFLASISEDC----------TVAVLDADFSEVF 305 (357)
T ss_dssp ECCCSS-----CEEEEEECSSSSCCEEEEETTS----------CEEEECTTSCEEE
T ss_pred Eeccce-----eEEEEEEcCCCCCEEEEEeCCC----------EEEEEECCCCcEe
Confidence 999998 89999999998 6899999987 9999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-19 Score=157.82 Aligned_cols=285 Identities=13% Similarity=0.099 Sum_probs=192.6
Q ss_pred cccceEEEeecc---ceehhhhccccceeeecccccEEEEEe------------CCCCceEEEEEeecCCCeEEEEEeEe
Q 015220 94 KRSKIIEIVAAR---DIVFALAQSGVCAAFCRETNQRICFLN------------VTADEVIRSLFYNKNNDSLITVSVYA 158 (411)
Q Consensus 94 ~RS~V~EIv~a~---dii~~L~~sG~c~af~~~t~~~ic~lN------------~s~~evIrsifyN~~n~slI~vSv~~ 158 (411)
-+.+|..+.... .+++.-...|....||..+++....+. ..+..-|.++-++..+..++.++ .
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~ 119 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS--S 119 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE--E
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE--e
Confidence 345666666543 677777889999999998887666554 24777889999988555444422 2
Q ss_pred cCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEee--CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--
Q 015220 159 SDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFD--DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-- 234 (411)
Q Consensus 159 sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFD--d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-- 234 (411)
.|. .++.-. +..++ ++..-..-....-+.|. ..++..++....++.++|||+++.+++.++..+
T Consensus 120 ~d~--~i~iwd-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 120 FDK--TLKVWD-----TNTLQ-----TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp TTS--EEEEEE-----TTTTE-----EEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS
T ss_pred CCC--eEEEee-----CCCCc-----cceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC
Confidence 222 233322 22211 11111100111123333 347779999999999999999999999888854
Q ss_pred ceeEEEEe-CCE-EEEEEecCCCceeeEEEEecCCc-EEeEee------------eccccCCcceeeeeeccee--EEee
Q 015220 235 NVQEIKIS-PGI-MLLIFTKASGHVPLKILSIEDGT-VLKSFN------------HLLHRNKKVDFIEQFNEKL--LVKQ 297 (411)
Q Consensus 235 ~VqeIkIS-dG~-~Lai~q~t~~~ipiKIl~I~tG~-~L~t~~------------~LL~h~K~I~FLE~~~ekl--lIKQ 297 (411)
.|..+.++ +|. +|++..... .|+||++.+++ .+..+. ..-+|..+|..+..++++. +...
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASADS---RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETTS---CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCcEEEEEcCCC---cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 89999999 554 455554333 48999999887 343321 1147889999999998864 5556
Q ss_pred cCceeeEEEcccceEEEeeccc--cC--CCceEEEE-e-eceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccce
Q 015220 298 ENENLQILDVRNFELTEVSRTE--FM--TPSAFIFL-Y-ENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 370 (411)
Q Consensus 298 e~~~LkI~dL~t~e~~~v~~T~--f~--hpsAfifL-y-~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~ 370 (411)
.+..|++||+.+++........ -. .+..+... . ...++++..+++|.+||+. |+++.++.+|.. .+..
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~v~~ 339 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK-----TVDC 339 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS-----CEEE
T ss_pred CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC-----eEEE
Confidence 7889999999998875421100 00 11111111 1 2255555699999999999 999999999998 8999
Q ss_pred EEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 371 IYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 371 i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+..+|||.+|++++.|. +|.|||+.+++.+
T Consensus 340 ~~~s~~~~~l~s~~~dg----------~i~iw~~~~~~~~ 369 (408)
T 4a11_B 340 CVFQSNFQELYSGSRDC----------NILAWVPSLYEPV 369 (408)
T ss_dssp EEEETTTTEEEEEETTS----------CEEEEEECC----
T ss_pred EEEcCCCCEEEEECCCC----------eEEEEeCCCCCcc
Confidence 99999999999999997 9999999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=154.35 Aligned_cols=277 Identities=10% Similarity=0.093 Sum_probs=194.7
Q ss_pred cceEEEeecc--ceehhhh-c---cccceeeecccccEEEEEeCCCCceEEEEEeecCC---CeEEEEEeEecCCCceee
Q 015220 96 SKIIEIVAAR--DIVFALA-Q---SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN---DSLITVSVYASDNFSSLR 166 (411)
Q Consensus 96 S~V~EIv~a~--dii~~L~-~---sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n---~slI~vSv~~sd~~s~L~ 166 (411)
..|..+-... ..+++.. . .|....||..+++........+..-|.++-++..+ +-|++.+ .|. .++
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---~dg--~i~ 93 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD---FGG--NLH 93 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE---TTS--CEE
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec---CCC--eEE
Confidence 3455555543 2333333 3 68999999999998877776777788999999874 4444422 232 222
Q ss_pred eEeeehhhhhhCCCCCCCcceeecccCCCCeE---Eee-----CCCCeEEEeecCCCeEEEEEeeCce-EEEEecc----
Q 015220 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFV---EFD-----DVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD---- 233 (411)
Q Consensus 167 cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgfv---EFD-----d~NGkiLt~~~~ds~ykVWdL~~Ys-~iysLs~---- 233 (411)
. - ++..++ .++.. .-.|.+.| .|. .++|+.|++++.|++++|||+++.+ ++.++..
T Consensus 94 i--w---d~~~~~----~~~~~--~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 94 I--W---NLEAPE----MPVYS--VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162 (357)
T ss_dssp E--E---CTTSCS----SCSEE--ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred E--E---eCCCCC----ccEEE--EEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence 2 2 222222 01111 11244433 332 4789999999999999999999987 6777752
Q ss_pred --CceeEEE----Ee-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec-----ceeEEeecCce
Q 015220 234 --KNVQEIK----IS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-----EKLLVKQENEN 301 (411)
Q Consensus 234 --~~VqeIk----IS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~-----ekllIKQe~~~ 301 (411)
..|..+. ++ +|.+|++.... -.|++|++.+++.... .+|..+|..+..++ +.++....+..
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDN---GDIKLFDLRNMALRWE----TNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETT---SEEEEEETTTTEEEEE----EECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccC---CeEEEEECccCceeee----cCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 1688887 45 78888777543 3699999999998654 56788999999986 45577778999
Q ss_pred eeEEEcccceEEEeec--cccCCCceEEEEeec---e-eEEEE-ecCeEEEEecC-C-------------------ceee
Q 015220 302 LQILDVRNFELTEVSR--TEFMTPSAFIFLYEN---Q-LFLTF-RNRTVAVWNFR-G-------------------ELVT 354 (411)
Q Consensus 302 LkI~dL~t~e~~~v~~--T~f~hpsAfifLy~s---q-lFlSf-sd~tI~iWn~~-G-------------------el~~ 354 (411)
|++||+.+++....-. +.-.|...+..+..+ + +++++ .|++|++||++ + +++.
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 9999999976543110 222688888888866 3 78888 78999999998 3 4678
Q ss_pred eeccccccCCCCccceEEEcCCCCEEE-EEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 SFEDHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~Dqd~ii-S~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++.+|.. .+..+..+|||+.|+ |++.|. +|+|||+.+++++
T Consensus 316 ~~~~~~~-----~v~~~~~s~~~~~l~~s~~~d~----------~i~iw~~~~~~~i 357 (357)
T 3i2n_A 316 NVTLSTQ-----PISSLDWSPDKRGLCVCSSFDQ----------TVRVLIVTKLNKI 357 (357)
T ss_dssp EEECCSS-----CEEEEEECSSSTTEEEEEETTS----------EEEEEEECC----
T ss_pred ccccCCC-----CeeEEEEcCCCCeEEEEecCCC----------cEEEEECCCcccC
Confidence 8999987 899999999999998 899987 9999999998864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-17 Score=148.39 Aligned_cols=269 Identities=13% Similarity=0.172 Sum_probs=195.8
Q ss_pred ceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 015220 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (411)
Q Consensus 97 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 174 (411)
+|..+-.. ...++.-...|....|+..+++.+..+.. +..-|.++-++...+-|++.| .|. .++.- +
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~---~d~--~i~vw-----d 93 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSAS---DDK--TLKIW-----D 93 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--EEEEE-----E
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEEC---CCC--EEEEE-----E
Confidence 44444443 34666777889999999999999888865 445578898988777666543 222 22222 2
Q ss_pred hhhCCCCCCCcceeecccCCCCe---EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEE
Q 015220 175 IRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLL 248 (411)
Q Consensus 175 i~~gk~~~~~~LF~~~~l~~Pgf---vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~La 248 (411)
++.++ ++.. .-.|.+. +.|. ++|..|++++.|++++|||+++.+++..+..+ .|..+.++ +|.+|+
T Consensus 94 ~~~~~-----~~~~--~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 94 VSSGK-----CLKT--LKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp TTTCC-----EEEE--EECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCc-----EEEE--EcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 22222 1111 0123333 3454 47888999999999999999999999999855 79999999 788777
Q ss_pred EEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 249 i~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
+..... .|+||++.+++.+.++. .++..++.++..++++. +....+..|++||+.+++... +..+|....
T Consensus 166 ~~~~d~---~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~ 237 (312)
T 4ery_A 166 SSSYDG---LCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYTGHKNEK 237 (312)
T ss_dssp EEETTS---CEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EECSSCCSS
T ss_pred EEeCCC---cEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEEecCCce
Confidence 775443 58999999999998743 46778899999988754 555678999999999999877 444443321
Q ss_pred -----EEE-eeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCce
Q 015220 327 -----IFL-YENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGK 398 (411)
Q Consensus 327 -----ifL-y~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gt 398 (411)
.+. ...+.++++ .|++|++||++ ++++.++.+|.. .+..++.+|++.+++|++.+. .|+
T Consensus 238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~~~~~--------d~~ 304 (312)
T 4ery_A 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD-----VVISTACHPTENIIASAALEN--------DKT 304 (312)
T ss_dssp SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECSSSSEEEEEECTT--------TCC
T ss_pred EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC-----cEEEEeecCcCCceEEEEccC--------Ccc
Confidence 111 223667787 89999999999 999999999988 789999999999999998421 249
Q ss_pred EEEeeec
Q 015220 399 LFVSLLM 405 (411)
Q Consensus 399 I~i~~i~ 405 (411)
|+||+..
T Consensus 305 i~~W~~d 311 (312)
T 4ery_A 305 IKLWKSD 311 (312)
T ss_dssp EEEEECC
T ss_pred EEEecCC
Confidence 9999863
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-18 Score=169.83 Aligned_cols=272 Identities=9% Similarity=0.089 Sum_probs=197.2
Q ss_pred cceehhhhccccceeeecccccEEE--EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic--~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~ 182 (411)
..+|+.-...|....||..+++..+ .+. ....-|.++=++..+..|++++. ..+.+ -+++... .|+...
T Consensus 71 g~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~-~~~~~--~~v~~wd-----~~~~~~ 141 (611)
T 1nr0_A 71 GYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGE-GRERF--GHVFLFD-----TGTSNG 141 (611)
T ss_dssp SSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEEC-CSSCS--EEEEETT-----TCCBCB
T ss_pred CcEEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEEC-CCCce--eEEEEee-----CCCCcc
Confidence 3467767778999999987665443 343 44567899999998777766442 11111 1222211 111100
Q ss_pred CCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCc
Q 015220 183 GFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGH 256 (411)
Q Consensus 183 ~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ 256 (411)
. + ..|.+ -+.|.......|++++.|+++++||+.+++++.++.++ .|..+++| ||.+|+....-.
T Consensus 142 --~-l----~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~-- 212 (611)
T 1nr0_A 142 --N-L----TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG-- 212 (611)
T ss_dssp --C-C----CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred --e-e----cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC--
Confidence 0 1 12222 45676544457999999999999999999999999876 79999999 899888876543
Q ss_pred eeeEEEEecCCcEEeEeee----ccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceE-EEE
Q 015220 257 VPLKILSIEDGTVLKSFNH----LLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAF-IFL 329 (411)
Q Consensus 257 ipiKIl~I~tG~~L~t~~~----LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf-ifL 329 (411)
-|+||++.+|+.+.++.. ..+|+.+|..+..++++.+| .+.+..++|||+.+++....-...-.+.... -+.
T Consensus 213 -~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~ 291 (611)
T 1nr0_A 213 -TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291 (611)
T ss_dssp -CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred -cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence 489999999999988521 12799999999999887544 4578899999999998876211111111122 222
Q ss_pred eeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 330 YENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 330 y~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
...+.++++ .|++|++||.. |+++..+.+|.. .++.+..||||++|+|++.|. +|++||+.+|
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-----~v~~l~~spdg~~l~s~s~D~----------~v~~Wd~~~~ 356 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNK-----AITALSSSADGKTLFSADAEG----------HINSWDISTG 356 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS----------CEEEEETTTC
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-----CEEEEEEeCCCCEEEEEeCCC----------cEEEEECCCC
Confidence 245777787 89999999999 888899999998 899999999999999999997 9999999999
Q ss_pred eee
Q 015220 408 TCK 410 (411)
Q Consensus 408 k~~ 410 (411)
++.
T Consensus 357 ~~~ 359 (611)
T 1nr0_A 357 ISN 359 (611)
T ss_dssp CEE
T ss_pred cee
Confidence 874
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=167.61 Aligned_cols=192 Identities=9% Similarity=0.019 Sum_probs=147.9
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCc--eEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Y--s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
+.|. ++|+.|++...|++++|||+.+. +++.++..+ .|..+.++ +|.+|++..... .|+||++.+++....
T Consensus 17 ~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 17 HAFN-SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR---NAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CEEC-SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS---SEEEC------CCCC
T ss_pred EEEC-CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC---eEEEEEcCCCCceee
Confidence 4455 48999999999999999999998 788888755 89999999 788888776543 499999999982222
Q ss_pred eeeccccCCcceeeeeecce--eEEeecCceeeEEEcccceEEEeeccccC-CCceEEEEeec---eeEEEE-ecCeEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFM-TPSAFIFLYEN---QLFLTF-RNRTVAV 345 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~-hpsAfifLy~s---qlFlSf-sd~tI~i 345 (411)
...+.+|..+|..+..++++ ++....+..|++||+.+++...+..+... |...+..+..+ ++++++ .|++|++
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i 172 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence 22377899999999998765 46667889999999999985444445666 88999998876 677877 8899999
Q ss_pred EecC-------------------CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 346 WNFR-------------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 346 Wn~~-------------------Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
||++ |+++.++ +|.. .++.+..+|||++|++++.|. +|+|||+.+
T Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~v~~~~~sp~~~~l~~~~~d~----------~i~iwd~~~ 236 (377)
T 3dwl_C 173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-----WVHAVGFSPSGNALAYAGHDS----------SVTIAYPSA 236 (377)
T ss_dssp EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-----SEEEEEECTTSSCEEEEETTT----------EEC-CEECS
T ss_pred EEEEecccCCCccccccccccchhhhhhcc-cCCc-----eEEEEEECCCCCEEEEEeCCC----------cEEEEECCC
Confidence 9984 7788888 8888 899999999999999999987 999999999
Q ss_pred eee
Q 015220 407 VTC 409 (411)
Q Consensus 407 Gk~ 409 (411)
|++
T Consensus 237 ~~~ 239 (377)
T 3dwl_C 237 PEQ 239 (377)
T ss_dssp TTS
T ss_pred CCC
Confidence 986
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-18 Score=154.32 Aligned_cols=194 Identities=7% Similarity=0.033 Sum_probs=160.4
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
-+.|+ ++|+.|+....++.++|||+.+.+ ++.++..+ .|..+.++ +|.+|++..... .|+||++++++...
T Consensus 13 ~~~~s-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 13 CHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR---NAYVWTLKGRTWKP 88 (372)
T ss_dssp EEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS---CEEEEEEETTEEEE
T ss_pred EEEEC-CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCC---eEEEEECCCCeeee
Confidence 35565 588999999999999999999987 88888754 89999999 788888776433 58999999999777
Q ss_pred EeeeccccCCcceeeeeecce--eEEeecCceeeEEEcccceEEEeec-cccCCCceEEEEeec---eeEEEE-ecCeEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTEVSR-TEFMTPSAFIFLYEN---QLFLTF-RNRTVA 344 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~-T~f~hpsAfifLy~s---qlFlSf-sd~tI~ 344 (411)
.+. +.+|..+|..+..++++ ++...++..+++||+.+++...+.. ....|...+..+..+ +.++++ .|++|+
T Consensus 89 ~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 89 TLV-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp EEE-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eEE-eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 654 56889999999998775 4556678999999999987433222 335678888888865 677777 799999
Q ss_pred EEecC-------------------CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 345 VWNFR-------------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 345 iWn~~-------------------Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+||++ |+++.++.+|.. .++.+..+||+++|++++.|. +|.+||+.
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~----------~i~i~d~~ 232 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-----WVHGVCFSANGSRVAWVSHDS----------TVCLADAD 232 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-----CEEEEEECSSSSEEEEEETTT----------EEEEEEGG
T ss_pred EEEcccccccccccccccccccchhhheEecCCCCC-----eEEEEEECCCCCEEEEEeCCC----------EEEEEECC
Confidence 99952 889999999988 899999999999999999886 99999999
Q ss_pred ceeee
Q 015220 406 FVTCK 410 (411)
Q Consensus 406 tGk~~ 410 (411)
+|+++
T Consensus 233 ~~~~~ 237 (372)
T 1k8k_C 233 KKMAV 237 (372)
T ss_dssp GTTEE
T ss_pred CCcee
Confidence 99875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-19 Score=177.60 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=159.9
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEecc--CceeEEEEe-CCEEEEEEecCC-CceeeEEEEecCCcEEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KNVQEIKIS-PGIMLLIFTKAS-GHVPLKILSIEDGTVLK 271 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~--~~VqeIkIS-dG~~Lai~q~t~-~~ipiKIl~I~tG~~L~ 271 (411)
+.|. ++|+.|++...|+++||||+.+.+ +..++.. ..|..+..| ||..|+...... ...-+++|+ +|+.+.
T Consensus 65 ~~~s-pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~ 141 (611)
T 1nr0_A 65 AKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG 141 (611)
T ss_dssp EEEC-TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB
T ss_pred EEEC-CCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc
Confidence 4554 689999999999999999997644 4556654 389999999 888887765443 335677776 788888
Q ss_pred EeeeccccCCcceeeeeecce---eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEK---LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVA 344 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~ 344 (411)
+ +.+|..+|..++.++++ ++-.+.+..+++||+.+++... ++.+|..++..++.+ ++++|+ .|++|+
T Consensus 142 ~---l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~---~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 142 N---LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---TFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp C---CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred e---ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee---eeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 7 77999999999999985 4556789999999999988876 788999999999987 788888 899999
Q ss_pred EEecC-Cceeeeec-------cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 345 VWNFR-GELVTSFE-------DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 345 iWn~~-Gel~~s~e-------~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+||.. |+.+.+|+ +|.. .+..+..+|||++|+|++.|. +|+|||+.+|+++
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~-----~V~~v~~spdg~~l~s~s~D~----------~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSG-----SVFGLTWSPDGTKIASASADK----------TIKIWNVATLKVE 274 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSS-----CEEEEEECTTSSEEEEEETTS----------EEEEEETTTTEEE
T ss_pred EEECCCCcEeeeeccccccccccCC-----CEEEEEECCCCCEEEEEeCCC----------eEEEEeCCCCcee
Confidence 99988 99999985 6887 899999999999999999998 9999999999875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.8e-18 Score=158.07 Aligned_cols=275 Identities=17% Similarity=0.225 Sum_probs=206.4
Q ss_pred cccceEEEeeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 015220 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (411)
Q Consensus 94 ~RS~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 173 (411)
....|..+.+..++++.-...|...+||..+++.+..+.. +...|.++-++. +.+++.| .|. .++.-.
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~l~s~s---~dg--~i~~wd---- 225 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHE--KRVVSGS---RDA--TLRVWD---- 225 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET--TEEEEEE---TTS--EEEEEE----
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEEecC--CEEEEEe---CCC--EEEEEE----
Confidence 3456777777788888889999999999999998888874 555678888763 4444432 222 233222
Q ss_pred hhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEe
Q 015220 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFT 251 (411)
Q Consensus 174 ~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q 251 (411)
+..|+ ++..- -.|.+.|.-=..+|..++....|+++++||+++.+++.++..+ .|..+.. +|..+++..
T Consensus 226 -~~~~~-----~~~~~--~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~ 296 (445)
T 2ovr_B 226 -IETGQ-----CLHVL--MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGS 296 (445)
T ss_dssp -SSSCC-----EEEEE--ECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEE
T ss_pred -CCCCc-----EEEEE--cCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEe
Confidence 22222 12111 1233333222227888999999999999999999999999865 7888887 666677665
Q ss_pred cCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEee
Q 015220 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (411)
Q Consensus 252 ~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~ 331 (411)
... .|+||++.+|+.+++ +-+|...+..+...++.++....+..|++||+.+++....-...-.|..++.+++.
T Consensus 297 ~d~---~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 370 (445)
T 2ovr_B 297 LDT---SIRVWDVETGNCIHT---LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370 (445)
T ss_dssp TTS---CEEEEETTTCCEEEE---ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE
T ss_pred CCC---eEEEEECCCCCEEEE---EcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE
Confidence 543 489999999999998 56888999999999998899999999999999999988733332348888888887
Q ss_pred c-eeEEEE-ecCeEEEEecC-Cceeeee-----ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 332 N-QLFLTF-RNRTVAVWNFR-GELVTSF-----EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 332 s-qlFlSf-sd~tI~iWn~~-Gel~~s~-----e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+ +.++++ .|++|++||++ |+++.++ .+|.. .+..+..+|||.++++|+.|.. ....|.+||
T Consensus 371 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~la~~~~dg~------~~~~l~v~d 439 (445)
T 2ovr_B 371 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG-----VVWRIRASNTKLVCAVGSRNGT------EETKLLVLD 439 (445)
T ss_dssp CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC-----EEEEEEECSSEEEEEEECSSSS------SCCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc-----eEEEEEecCCEEEEEEcccCCC------CccEEEEEE
Confidence 6 667777 79999999999 9999988 35555 8999999999999999999971 123599999
Q ss_pred ecc
Q 015220 404 LMF 406 (411)
Q Consensus 404 i~t 406 (411)
+..
T Consensus 440 f~~ 442 (445)
T 2ovr_B 440 FDV 442 (445)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-17 Score=146.74 Aligned_cols=238 Identities=11% Similarity=0.077 Sum_probs=175.9
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEe
Q 015220 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTY 210 (411)
Q Consensus 134 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~ 210 (411)
.+.+.|.++-++..+.-|++.+ |. .++. - ++..++... ++..-....+++ .+.|.. +|+.|+.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~----dg--~i~i--w---~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 114 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG----KG--CVKV--W---DISHPGNKS--PVSQLDCLNRDNYIRSCKLLP-DGCTLIV 114 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC----BS--EEEE--E---ETTSTTCCS--CSEEEECSCTTSBEEEEEECT-TSSEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC----CC--eEEE--E---ECCCCCcee--eeecccccCCCCcEEEEEEcC-CCCEEEE
Confidence 5777889999988766555532 33 2222 2 222222111 121111112333 356664 7888888
Q ss_pred ecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCccee
Q 015220 211 SAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (411)
Q Consensus 211 ~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~F 285 (411)
...++.+++||+.+.+ ....+..+ .|..+.++ +|.+|++..... .+++|++.+++.+.+ +-+|..+|..
T Consensus 115 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~~~d~~~~~~~~~---~~~~~~~i~~ 188 (337)
T 1gxr_A 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG---NIAVWDLHNQTLVRQ---FQGHTDGASC 188 (337)
T ss_dssp EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEEEE---ECCCSSCEEE
T ss_pred EcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceeee---eecccCceEE
Confidence 9999999999999987 56666644 79999999 777777765443 489999999999998 4578899999
Q ss_pred eeeecce--eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCceeeeeccc
Q 015220 286 IEQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGELVTSFEDH 359 (411)
Q Consensus 286 LE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Gel~~s~e~H 359 (411)
+..++++ ++....+..|++||+.+++.... +.++..+..+..+ +.+++. .+++|.+||++......+.+|
T Consensus 189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 264 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ----HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH 264 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC
T ss_pred EEECCCCCEEEEEecCCcEEEEECCCCceEee----ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCC
Confidence 9998775 45566889999999999988762 3466777777765 566666 789999999995555678888
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.. .+..+..+||+++|++++.|. +|.+||+.+|+++
T Consensus 265 ~~-----~v~~~~~~~~~~~l~~~~~dg----------~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 265 ES-----CVLSLKFAYCGKWFVSTGKDN----------LLNAWRTPYGASI 300 (337)
T ss_dssp SS-----CEEEEEECTTSSEEEEEETTS----------EEEEEETTTCCEE
T ss_pred cc-----ceeEEEECCCCCEEEEecCCC----------cEEEEECCCCeEE
Confidence 87 899999999999999999886 9999999999865
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-19 Score=164.54 Aligned_cols=185 Identities=12% Similarity=0.134 Sum_probs=154.0
Q ss_pred CeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
|..|+.++.|++++|||+++.+++.++.++ .|..++.+++.+|++.... --|+||++++|+.+.+ +-+|..+
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~---~~~h~~~ 205 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD---RTVRVWDIKKGCCTHV---FEGHNST 205 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETT---SCEEEEETTTTEEEEE---ECCCSSC
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCC---CCEEEEECCCCcEEEE---ECCCCCc
Confidence 458888999999999999999999999865 8999999944355555443 3489999999999998 5589999
Q ss_pred ceeeeeec----ceeEEeecCceeeEEEcccceEEEe--------------------eccccCCCceEEEEeec-eeEEE
Q 015220 283 VDFIEQFN----EKLLVKQENENLQILDVRNFELTEV--------------------SRTEFMTPSAFIFLYEN-QLFLT 337 (411)
Q Consensus 283 I~FLE~~~----ekllIKQe~~~LkI~dL~t~e~~~v--------------------~~T~f~hpsAfifLy~s-qlFlS 337 (411)
|..+...+ ..++....+..|++||+.+++.... ..+..+|...+.++... +.+++
T Consensus 206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 285 (464)
T 3v7d_B 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 285 (464)
T ss_dssp EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEE
T ss_pred cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEE
Confidence 99999873 3467778899999999999764321 12556677777777655 66777
Q ss_pred E-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 338 F-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 338 f-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+ .|++|++||++ |+++.++.+|.. .+..+..+||++.+++|+.|. +|++||+.+|+++
T Consensus 286 ~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~sg~~dg----------~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 286 GSYDNTLIVWDVAQMKCLYILSGHTD-----RIYSTIYDHERKRCISASMDT----------TIRIWDLENGELM 345 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEETTTTEEEEEETTS----------CEEEEETTTTEEE
T ss_pred EeCCCeEEEEECCCCcEEEEecCCCC-----CEEEEEEcCCCCEEEEEeCCC----------cEEEEECCCCcEE
Confidence 7 79999999999 999999999988 899999999999999999997 9999999999875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.8e-19 Score=164.48 Aligned_cols=190 Identities=15% Similarity=0.180 Sum_probs=155.4
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
+.|. ++|+.|+.++.|++++|||+.+.+.+..+..+ .|..+.++ +|..|+..... --++||++.+|+...++
T Consensus 129 v~~s-~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d---~~v~iwd~~~~~~~~~~- 203 (393)
T 1erj_A 129 VCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD---RTVRIWDLRTGQCSLTL- 203 (393)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT---SEEEEEETTTTEEEEEE-
T ss_pred EEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCC---CcEEEEECCCCeeEEEE-
Confidence 5664 58999999999999999999999999999865 79999999 78877776543 35899999999998874
Q ss_pred eccccCCcceeeeeec-ce--eEEeecCceeeEEEcccceEEEeec----cccCCCceEEEEeec---eeEEEE-ecCeE
Q 015220 275 HLLHRNKKVDFIEQFN-EK--LLVKQENENLQILDVRNFELTEVSR----TEFMTPSAFIFLYEN---QLFLTF-RNRTV 343 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~-ek--llIKQe~~~LkI~dL~t~e~~~v~~----T~f~hpsAfifLy~s---qlFlSf-sd~tI 343 (411)
.+...+..+..++ ++ +.....+..+++||+.+++...... ...+|...+..+..+ +.++|+ .|++|
T Consensus 204 ---~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 204 ---SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp ---ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ---EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 3456788888887 44 4555678999999999998776221 125788889888876 678888 79999
Q ss_pred EEEecC-------------CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 344 AVWNFR-------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 344 ~iWn~~-------------Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++||++ |....++.+|.. .+..+..++|+.+|+||+.|. +|++||+.+|+++
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sgs~D~----------~v~iwd~~~~~~~ 345 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKD-----FVLSVATTQNDEYILSGSKDR----------GVLFWDKKSGNPL 345 (393)
T ss_dssp EEEEC---------------CEEEEEECCSS-----CEEEEEECGGGCEEEEEETTS----------EEEEEETTTCCEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccC-----cEEEEEECCCCCEEEEEeCCC----------eEEEEECCCCeEE
Confidence 999987 335568889988 789999999999999999997 9999999999875
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-19 Score=163.37 Aligned_cols=188 Identities=15% Similarity=0.113 Sum_probs=158.4
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc------
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT------ 268 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~------ 268 (411)
+.|. ++|+.|++.+.|++++|||..+.+....+..+ .|..+..+ +|.+|+..... --++||++..++
T Consensus 70 ~~~s-~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d---~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 70 MDWC-KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD---NKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp EEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTT---SEEEEEECCCCTTCCSGG
T ss_pred EEEC-CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCC---CCEEEEEEeccccccccc
Confidence 3554 57899999999999999999999988777644 89999999 88888876543 347899987652
Q ss_pred EEeEeeeccccCCcceeeeeecce--eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEEEE-ec
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFLTF-RN 340 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFlSf-sd 340 (411)
..++ +.+|...|..+..+++. ++..+.+..+++||+.+++... +..+|...+.++..+ ++|+|+ .|
T Consensus 146 ~~~~---~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~g~~l~sgs~D 219 (354)
T 2pbi_B 146 KKKS---VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ---SFHGHGADVLCLDLAPSETGNTFVSGGCD 219 (354)
T ss_dssp GCEE---EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECCCSSCCEEEEEETT
T ss_pred ccee---eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE---EEcCCCCCeEEEEEEeCCCCCEEEEEeCC
Confidence 2333 55789999999988875 5667789999999999999887 777899888887653 578888 89
Q ss_pred CeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 341 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 341 ~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++|++||++ |..+.+|++|.. .++.+..+|||+.|+|++.|. +|+|||+.+++++
T Consensus 220 g~v~~wd~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~----------~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 220 KKAMVWDMRSGQCVQAFETHES-----DVNSVRYYPSGDAFASGSDDA----------TCRLYDLRADREV 275 (354)
T ss_dssp SCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS----------CEEEEETTTTEEE
T ss_pred CeEEEEECCCCcEEEEecCCCC-----CeEEEEEeCCCCEEEEEeCCC----------eEEEEECCCCcEE
Confidence 999999999 999999999998 899999999999999999997 9999999988753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-17 Score=150.37 Aligned_cols=278 Identities=12% Similarity=0.045 Sum_probs=187.5
Q ss_pred ceEEEeeccceehhhhccccceeeecccc--cEEEEEeCC-CCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 015220 97 KIIEIVAARDIVFALAQSGVCAAFCRETN--QRICFLNVT-ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (411)
Q Consensus 97 ~V~EIv~a~dii~~L~~sG~c~af~~~t~--~~ic~lN~s-~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 173 (411)
+|.-+-+..++++.-...|....||..++ +.+..+... +..-|+++=++....-|++.| .|. .++.-.. +
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s---~D~--~v~iw~~--~ 88 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS---FDS--TVSIWAK--E 88 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE---TTS--CEEEEEC---
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe---CCC--cEEEEEc--c
Confidence 45555555566666677899999998776 445566544 888899999999877666544 222 2332221 1
Q ss_pred hhhhCCCC--CCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEee----CceEEEEeccC--ceeEEEEe
Q 015220 174 YIRRGKPD--AGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLYSISDK--NVQEIKIS 242 (411)
Q Consensus 174 ~i~~gk~~--~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~----~Ys~iysLs~~--~VqeIkIS 242 (411)
.++.. ...++. ..-.|.+ -+.|. ++|+.|++++.|++++|||+. .++++..+..+ .|..+..+
T Consensus 89 ---~~~~~~~~~~~~~--~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 89 ---ESADRTFEMDLLA--IIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp ---------CCCEEEE--EEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred ---cCcCccccceeEE--EEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 11100 011111 0112333 34564 579999999999999999994 45788888765 79999999
Q ss_pred -CCEEEEEEecCCCceeeEEEEecCC--cEEeEeeeccccCCcceeeeeecc--ee--EEeecCceeeEEEcccce----
Q 015220 243 -PGIMLLIFTKASGHVPLKILSIEDG--TVLKSFNHLLHRNKKVDFIEQFNE--KL--LVKQENENLQILDVRNFE---- 311 (411)
Q Consensus 243 -dG~~Lai~q~t~~~ipiKIl~I~tG--~~L~t~~~LL~h~K~I~FLE~~~e--kl--lIKQe~~~LkI~dL~t~e---- 311 (411)
+|.+|+....-. .|+||++.++ +.+.+ +-+|..+|..+..+++ .. .-...+..++|||+.+++
T Consensus 163 p~~~~l~s~s~D~---~i~iW~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 163 PSEALLASSSYDD---TVRIWKDYDDDWECVAV---LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp SSSSEEEEEETTS---CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred CCCCEEEEEcCCC---eEEEEECCCCCeeEEEE---ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 788887765443 5899999988 56666 6689999999999987 43 445678999999998762
Q ss_pred -EEEeeccccC-CCceEEEEeec--eeEEEE-ecCeEEEEecC-Cc--eee-eeccccccCCCCccceEEEcC--CCCEE
Q 015220 312 -LTEVSRTEFM-TPSAFIFLYEN--QLFLTF-RNRTVAVWNFR-GE--LVT-SFEDHLLWHPDCNTNNIYITS--DQDLI 380 (411)
Q Consensus 312 -~~~v~~T~f~-hpsAfifLy~s--qlFlSf-sd~tI~iWn~~-Ge--l~~-s~e~H~~~~~~c~~n~i~Is~--Dqd~i 380 (411)
......++-. |...+..++.+ .+++++ .|++|++|+.. |+ ++. .+.+|.. ..++.+..+| |+++|
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~----~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGV----YEINVVKWLELNGKTIL 312 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTT----SCEEEEEEC-----CCE
T ss_pred ceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecccccccc----ceEEEEEEecCCCceEE
Confidence 1111223333 88888888765 567777 89999999998 63 343 3456653 3688899999 89999
Q ss_pred EEEecCCCCCccccCCceEEEeeecce
Q 015220 381 ISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 381 iS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+|||.|. +|+|||+.+.
T Consensus 313 as~s~Dg----------~v~~W~~~~~ 329 (330)
T 2hes_X 313 ATGGDDG----------IVNFWSLEKA 329 (330)
T ss_dssp EEEETTS----------EEEEEEC---
T ss_pred EEecCCC----------cEEEEEeccC
Confidence 9999997 9999999764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-19 Score=166.72 Aligned_cols=185 Identities=15% Similarity=0.164 Sum_probs=151.0
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CC-EEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PG-IMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG-~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
+.|. ++|+.|++...|++++|||+++.+++..+..+ .|..+.++ ++ .+++.... .. -|+||++.+|+.+..+
T Consensus 145 v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~-dg--~v~~wd~~~~~~~~~~ 220 (357)
T 4g56_B 145 LSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE-DG--RILLWDTRKPKPATRI 220 (357)
T ss_dssp EEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET-TS--CEEECCTTSSSCBCBC
T ss_pred EEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc-CC--ceEEEECCCCceeeee
Confidence 3453 68999999999999999999999999999865 89999998 44 33444332 22 4899999999998875
Q ss_pred eeccccCCcceeeeeecce--eE-EeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEE
Q 015220 274 NHLLHRNKKVDFIEQFNEK--LL-VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAV 345 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ek--ll-IKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~i 345 (411)
. +..+...+..+..++++ ++ ...++..|++||+.+++... +.-+|..++..++.+ ++++|+ .|++|+|
T Consensus 221 ~-~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 221 D-FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ---TSAVHSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp C-CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE---EECCCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred e-eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE---EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 4 34566788888888753 33 34678899999999999877 777899999999875 578888 6899999
Q ss_pred EecC-CceeeeeccccccCCCCccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 346 WNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 346 Wn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
||.+ |++++.+ +|.. .++.|+.|| |+.+|+|++.|. +|++||+.+
T Consensus 297 wd~~~~~~~~~~-~H~~-----~V~~vafsP~d~~~l~s~s~Dg----------~v~iW~~~~ 343 (357)
T 4g56_B 297 LDADFSEVFRDL-SHRD-----FVTGVAWSPLDHSKFTTVGWDH----------KVLHHHLPS 343 (357)
T ss_dssp ECTTSCEEEEEC-CCSS-----CEEEEEECSSSTTEEEEEETTS----------CEEEEECC-
T ss_pred EECCCCcEeEEC-CCCC-----CEEEEEEeCCCCCEEEEEcCCC----------eEEEEECCC
Confidence 9999 8888766 7888 799999998 899999999997 999999965
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-18 Score=160.66 Aligned_cols=266 Identities=11% Similarity=0.129 Sum_probs=191.3
Q ss_pred ceEEEeeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhh
Q 015220 97 KIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR 176 (411)
Q Consensus 97 ~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~ 176 (411)
.|.-+-.-.+.+++-...|...+||..+++.+..+.. +..-|.++-++ .+.|++. ..|. .++.-. +.
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~sg---~~dg--~i~vwd-----~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQYD--ERVIITG---SSDS--TVRVWD-----VN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEECC--SSEEEEE---ETTS--CEEEEE-----SS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEEC--CCEEEEE---cCCC--eEEEEE-----CC
Confidence 3444444567888888999999999999998888875 44556777762 3333332 2232 222222 22
Q ss_pred hCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE---EEeccC--ceeEEEEeCCEEEEEEe
Q 015220 177 RGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSISDK--NVQEIKISPGIMLLIFT 251 (411)
Q Consensus 177 ~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i---ysLs~~--~VqeIkISdG~~Lai~q 251 (411)
.|+ .+.. .-.|.+-|.-=..++..|+.++.|++++|||+.+.+.+ ..+..+ .|..+.. +|.+|++..
T Consensus 202 ~~~-----~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~ 273 (435)
T 1p22_A 202 TGE-----MLNT--LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSAS 273 (435)
T ss_dssp SCC-----EEEE--ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEE
T ss_pred CCc-----EEEE--EcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEe
Confidence 222 1111 11233433322334568888999999999999987754 555544 7888887 555555554
Q ss_pred cCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEee
Q 015220 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (411)
Q Consensus 252 ~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~ 331 (411)
.. -.|+||++.+|+.+.+ +-+|..+|..+...+..++....+..|++||+.+++... +..+|...+.++..
T Consensus 274 ~d---g~i~vwd~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 274 GD---RTIKVWNTSTCEFVRT---LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRF 344 (435)
T ss_dssp TT---SEEEEEETTTCCEEEE---EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEC
T ss_pred CC---CeEEEEECCcCcEEEE---EcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEE---EEeCCcCcEEEEEe
Confidence 32 3589999999999999 458899999999988888888999999999999999887 77789999988886
Q ss_pred c-eeEEEE-ecCeEEEEecC-Cc---------eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceE
Q 015220 332 N-QLFLTF-RNRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKL 399 (411)
Q Consensus 332 s-qlFlSf-sd~tI~iWn~~-Ge---------l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI 399 (411)
. +.++++ .|++|++||++ |. .+.++.+|.. .+..+.. |++.|+|++.|. +|
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~--~~~~l~s~s~Dg----------~i 407 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-----RVFRLQF--DEFQIVSSSHDD----------TI 407 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-----CCCCEEE--CSSCEEECCSSS----------EE
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC-----CeEEEEe--CCCEEEEEeCCC----------EE
Confidence 6 667777 79999999998 66 7889999988 6777777 899999999997 99
Q ss_pred EEeeecceee
Q 015220 400 FVSLLMFVTC 409 (411)
Q Consensus 400 ~i~~i~tGk~ 409 (411)
+|||+.++..
T Consensus 408 ~iwd~~~~~~ 417 (435)
T 1p22_A 408 LIWDFLNDPA 417 (435)
T ss_dssp EEEC------
T ss_pred EEEECCCCCC
Confidence 9999998764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-18 Score=158.95 Aligned_cols=188 Identities=11% Similarity=0.127 Sum_probs=153.8
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEE--Ee-ccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc--
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SI-SDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT-- 268 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iy--sL-s~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~-- 268 (411)
.+.|. ++|+.|++++.|++++|||+.+.+.+. .+ .++ .|..+++| +|.+|+...... .++||++.+++
T Consensus 21 ~l~~s-p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~---~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 21 FLAWN-PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA---TTCIWKKNQDDFE 96 (345)
T ss_dssp EEEEC-TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS---CEEEEEECCC-EE
T ss_pred EEEEC-CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC---cEEEEEccCCCeE
Confidence 57775 589999999999999999999987542 33 233 79999999 888888876543 47999999885
Q ss_pred EEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCe
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRT 342 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~t 342 (411)
.+.+ +-+|..+|..+..++++-++. +.+..|+|||+.+++..+...+.-.|...+..+..+ ++++++ .|++
T Consensus 97 ~~~~---~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~ 173 (345)
T 3fm0_A 97 CVTT---LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173 (345)
T ss_dssp EEEE---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSC
T ss_pred EEEE---ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCc
Confidence 4455 668999999999998765444 578899999999886655445677888888888866 678888 7899
Q ss_pred EEEEecC-Cc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 343 VAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 343 I~iWn~~-Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
|++|+.+ ++ .+.++++|.. .+..+..+|||++|+|++.|. +|+|||+.+
T Consensus 174 i~~w~~~~~~~~~~~~~~~h~~-----~v~~l~~sp~g~~l~s~s~D~----------~v~iW~~~~ 225 (345)
T 3fm0_A 174 VKLYREEEDDWVCCATLEGHES-----TVWSLAFDPSGQRLASCSDDR----------TVRIWRQYL 225 (345)
T ss_dssp EEEEEEETTEEEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS----------CEEEEEEEC
T ss_pred EEEEEecCCCEEEEEEecCCCC-----ceEEEEECCCCCEEEEEeCCC----------eEEEecccc
Confidence 9999998 55 4569999998 899999999999999999997 999999743
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=154.73 Aligned_cols=250 Identities=13% Similarity=0.147 Sum_probs=179.9
Q ss_pred EEeCCCCceEEEEEeecC---CCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee-------cccCCCCeEE
Q 015220 130 FLNVTADEVIRSLFYNKN---NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-------ESLKWPGFVE 199 (411)
Q Consensus 130 ~lN~s~~evIrsifyN~~---n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~-------~~l~~PgfvE 199 (411)
.+-..+..-|.+|=++.. ++.+++++ .+++ .++..... .++. ...+.. ..+..-.|-.
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~--~~~~--~v~vw~~~-----~~~~---~~~~~~~~~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFAT--VGSN--RVTLYECH-----SQGE---IRLLQSYVDADADENFYTCAWTY 79 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEE--EETT--EEEEEEEC-----GGGC---EEEEEEEECSCTTCCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEE--CCCC--EEEEEEcC-----CCcE---EEeeeeccccCCCCcEEEEEecc
Confidence 566677788888888863 56666633 2333 23333332 1110 001111 1111112222
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
-...+|..|+....|++++|||+.+.+++.++..+ .|..++.+ ++.+|++.... -.|+||++.+|+.+..+..
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD---HALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT---SCEEEEETTTTEEEEEECS
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC---CeEEEEEeecCeEEEEecc
Confidence 22334889999999999999999999999999844 89999999 57777776653 3599999999999998655
Q ss_pred ccccCCcceeeeeecce--eEEeecCceeeEEEcccceEEEee-------------------------ccccCCCceEEE
Q 015220 276 LLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTEVS-------------------------RTEFMTPSAFIF 328 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~-------------------------~T~f~hpsAfif 328 (411)
+-+|..+|..+..++++ ++....+..|++||+.+++....- .+..+|...+.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 57899999999998775 455567889999999987654310 122237777777
Q ss_pred Eeec-eeEEEE-ecCeEEEEecC-Cc--------------eeeeeccccccCCCCccceEEEcCC--CCEEEEEecCCCC
Q 015220 329 LYEN-QLFLTF-RNRTVAVWNFR-GE--------------LVTSFEDHLLWHPDCNTNNIYITSD--QDLIISYCKADSD 389 (411)
Q Consensus 329 Ly~s-qlFlSf-sd~tI~iWn~~-Ge--------------l~~s~e~H~~~~~~c~~n~i~Is~D--qd~iiS~~~d~~~ 389 (411)
+..+ +++++. .|++|++||++ ++ ++.++.+|.. .++.+.++|| |.+|++|+.|.
T Consensus 237 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~~l~~~~~dg-- 309 (366)
T 3k26_A 237 VRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-----DIWYMRFSMDFWQKMLALGNQVG-- 309 (366)
T ss_dssp EEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-----CSSCCCCEECTTSSEEEEECTTS--
T ss_pred EEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC-----cEEEEEEcCCCCCcEEEEEecCC--
Confidence 7654 677777 89999999998 53 4788888887 7899999999 99999999886
Q ss_pred CccccCCceEEEeeecceee
Q 015220 390 DPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 390 ~~~~~~~gtI~i~~i~tGk~ 409 (411)
+|.|||+.+|++
T Consensus 310 --------~i~vwd~~~~~~ 321 (366)
T 3k26_A 310 --------KLYVWDLEVEDP 321 (366)
T ss_dssp --------CEEEEECCSSSG
T ss_pred --------cEEEEECCCCCC
Confidence 999999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=157.76 Aligned_cols=187 Identities=14% Similarity=0.189 Sum_probs=151.5
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeC--ceEEEEeccC--ceeEEEEe-C--CEEEEEEecCCCceeeEEEEecCCc--
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSISDK--NVQEIKIS-P--GIMLLIFTKASGHVPLKILSIEDGT-- 268 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~--Ys~iysLs~~--~VqeIkIS-d--G~~Lai~q~t~~~ipiKIl~I~tG~-- 268 (411)
+.|+ ++|+.|++++.|++++|||+.+ .+++.++.++ .|..+..+ | |.+|+....-. -|+||++++|+
T Consensus 15 ~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~---~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 15 AVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG---KVMIWKEENGRWS 90 (297)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT---EEEEEEBSSSCBC
T ss_pred EEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC---EEEEEEcCCCceE
Confidence 3565 7899999999999999999975 5788899866 89999997 3 78888776443 48999999995
Q ss_pred EEeEeeeccccCCcceeeeeecc----eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec------------
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFNE----KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN------------ 332 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~e----kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s------------ 332 (411)
.+.+ +-+|..+|..+..+++ .++....+..+++||+.+++... ..+...|...+..+..+
T Consensus 91 ~~~~---~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 91 QIAV---HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp CCEE---ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEEECCSSCEEEEEECCCC---------
T ss_pred EEEE---eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeeeecccCccceEeecCCcccccccCCC
Confidence 4444 4578999999999875 45677889999999999874321 12455688888777654
Q ss_pred ----eeEEEE-ecCeEEEEecC-Cc----eeeeeccccccCCCCccceEEEcCCC---CEEEEEecCCCCCccccCCceE
Q 015220 333 ----QLFLTF-RNRTVAVWNFR-GE----LVTSFEDHLLWHPDCNTNNIYITSDQ---DLIISYCKADSDDPLAEGNGKL 399 (411)
Q Consensus 333 ----qlFlSf-sd~tI~iWn~~-Ge----l~~s~e~H~~~~~~c~~n~i~Is~Dq---d~iiS~~~d~~~~~~~~~~gtI 399 (411)
++++|+ .|++|++||++ +. ++.+|++|.. .++.|..+||+ .+|+|+|.|. +|
T Consensus 167 ~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~-----~V~~v~~sp~~~~~~~las~s~D~----------~v 231 (297)
T 2pm7_B 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----WVRDVAWSPTVLLRSYMASVSQDR----------TC 231 (297)
T ss_dssp ---CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-----CEEEEEECCCCSSSEEEEEEETTS----------CE
T ss_pred CCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC-----ceEEEEECCCCCCceEEEEEECCC----------cE
Confidence 478888 79999999998 55 7789999998 79999999995 8999999997 99
Q ss_pred EEeeecce
Q 015220 400 FVSLLMFV 407 (411)
Q Consensus 400 ~i~~i~tG 407 (411)
+|||+.++
T Consensus 232 ~iWd~~~~ 239 (297)
T 2pm7_B 232 IIWTQDNE 239 (297)
T ss_dssp EEEEESST
T ss_pred EEEEeCCC
Confidence 99999875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-18 Score=150.41 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=154.8
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCce-----EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-----~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
|.|...+|+.|++++.|+++||||+.+.+ ++.++.++ .|..+.++ ||.+|+...... .+++|+..++..
T Consensus 44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~---~i~~~~~~~~~~ 120 (340)
T 4aow_A 44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG---TLRLWDLTTGTT 120 (340)
T ss_dssp EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEE
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc---cceEEeecccce
Confidence 36777778999999999999999998754 56677754 89999999 888888776543 589999999999
Q ss_pred EeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEEEE-ecC
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFLTF-RNR 341 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFlSf-sd~ 341 (411)
... ...+...+..+...++.- +....+..+++||+........ ....|...+..+..+ .++++. .|+
T Consensus 121 ~~~---~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~ 195 (340)
T 4aow_A 121 TRR---FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV--QDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195 (340)
T ss_dssp EEE---EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE--CSSSCSSCEEEEEECSCSSSCEEEEEETTS
T ss_pred eee---ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE--EeccccCcccceEEccCCCCcEEEEEcCCC
Confidence 888 446666777777666554 4456789999999998776653 555677777776643 567777 789
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|++||++ +.++.++.+|.. .++.+.++|||++|+||+.|. +|++||+.+++++
T Consensus 196 ~i~i~d~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~Dg----------~i~iwd~~~~~~~ 250 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHIGHTG-----YLNTVTVSPDGSLCASGGKDG----------QAMLWDLNEGKHL 250 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTC----------EEEEEETTTTEEE
T ss_pred EEEEEECCCCceeeEecCCCC-----cEEEEEECCCCCEEEEEeCCC----------eEEEEEeccCcee
Confidence 99999999 899999999998 899999999999999999997 9999999988875
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-18 Score=152.21 Aligned_cols=269 Identities=12% Similarity=0.101 Sum_probs=198.2
Q ss_pred cceEEEeeccc---eehhhhccccceeeec----cccc------EEEEEeCC---------CCceEEEEEeecCCCeEEE
Q 015220 96 SKIIEIVAARD---IVFALAQSGVCAAFCR----ETNQ------RICFLNVT---------ADEVIRSLFYNKNNDSLIT 153 (411)
Q Consensus 96 S~V~EIv~a~d---ii~~L~~sG~c~af~~----~t~~------~ic~lN~s---------~~evIrsifyN~~n~slI~ 153 (411)
.+|.-+....| ++++-...|....|+. .+++ ..+.+... +..-|.++-++...+-|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 44555555433 7777778899999999 8888 56666542 4558999999987766665
Q ss_pred EEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEE
Q 015220 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (411)
Q Consensus 154 vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iys 230 (411)
.+ .|. .++... ..|+ ++..- -.|++ -+.|. ++|+.|++...|+.+++||+.+.+.+..
T Consensus 126 ~~---~dg--~i~i~~------~~~~-----~~~~~--~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 126 GV---ENG--ELRLWN------KTGA-----LLNVL--NFHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp EE---TTS--CEEEEE------TTSC-----EEEEE--CCCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred Ee---CCC--eEEEEe------CCCC-----eeeec--cCCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 33 222 233221 1111 11110 11222 34564 4788888889999999999999999988
Q ss_pred eccC--c---------------eeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce
Q 015220 231 ISDK--N---------------VQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK 292 (411)
Q Consensus 231 Ls~~--~---------------VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek 292 (411)
+..+ . +..+..+ ++. +++... .-.|++|++.+++.+.. +.+|..+|..+..++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~g~i~~~d~~~~~~~~~---~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGP---KGAIFVYQITEKTPTGK---LIGHHGPISVLEFNDTN 259 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTE-EEEECG---GGCEEEEETTCSSCSEE---ECCCSSCEEEEEEETTT
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcC---CCeEEEEEcCCCceeee---eccCCCceEEEEECCCC
Confidence 8755 2 8888888 555 444433 24689999999999988 55889999999999776
Q ss_pred --eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCC
Q 015220 293 --LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (411)
Q Consensus 293 --llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c 366 (411)
++....+..|++||+.+++... +...|+..+..+..+ ..+++. .|++|++||++ |+++..+..|..
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----- 331 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQN---CFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGV----- 331 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCSE---EECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTC-----
T ss_pred CEEEEEcCCCEEEEEECCCCccce---EecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCc-----
Confidence 5666778999999999998776 556688888888766 366666 89999999998 999999999987
Q ss_pred ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.+..+.++|||++|++++.|. +|.|||+.+++
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg----------~i~i~~~~~~~ 363 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDG----------QVNVYDLKKLN 363 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTS----------CEEEEECHHHH
T ss_pred cEEEEEEcCCCCEEEEEECCC----------eEEEEECCCCc
Confidence 899999999999999999886 99999999987
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-17 Score=143.91 Aligned_cols=256 Identities=16% Similarity=0.159 Sum_probs=187.7
Q ss_pred ceehhhhccccceeeecccccEE---EEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC
Q 015220 106 DIVFALAQSGVCAAFCRETNQRI---CFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~i---c~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~ 181 (411)
.++++-. .|....||..+++.. ..+.. .+...|.++-++...+.|++.+ .| ..++...+ ..++
T Consensus 64 ~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d--~~i~~~d~-----~~~~-- 130 (337)
T 1gxr_A 64 RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG---EA--STLSIWDL-----AAPT-- 130 (337)
T ss_dssp SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE---SS--SEEEEEEC-----CCC---
T ss_pred cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc---CC--CcEEEEEC-----CCCC--
Confidence 3455555 799999998877633 33332 5677899999999777666643 22 22333322 1111
Q ss_pred CCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCC
Q 015220 182 AGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASG 255 (411)
Q Consensus 182 ~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~ 255 (411)
+......-.+.+ -+.|.. +|+.|+....++.++|||+++.+++..+..+ .|..+.++ +|.+|++....
T Consensus 131 ---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 204 (337)
T 1gxr_A 131 ---PRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-- 204 (337)
T ss_dssp ----EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred ---cceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC--
Confidence 111111111222 345654 7888899999999999999999999999854 89999999 78777776543
Q ss_pred ceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-
Q 015220 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN- 332 (411)
Q Consensus 256 ~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s- 332 (411)
-.|++|++.+++.+..+ .+..++..+..++++- ++..++..|++||+.+++... ...|+..+..+..+
T Consensus 205 -g~i~~~d~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~----~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 205 -NTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ----LHLHESCVLSLKFAY 275 (337)
T ss_dssp -SEEEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE----ECCCSSCEEEEEECT
T ss_pred -CcEEEEECCCCceEeee----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE----EcCCccceeEEEECC
Confidence 35899999999999874 4678899999887754 555678999999999998764 45688888888776
Q ss_pred --eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 333 --QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 333 --qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+++++. .|++|++||+. |+++..+ .|.. .+..+.++||+++|++++.|. +|.+||+.
T Consensus 276 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~-----~v~~~~~s~~~~~l~~~~~dg----------~i~iw~~~ 336 (337)
T 1gxr_A 276 CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESS-----SVLSCDISVDDKYIVTGSGDK----------KATVYEVI 336 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSS-----CEEEEEECTTSCEEEEEETTS----------CEEEEEEE
T ss_pred CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCC-----cEEEEEECCCCCEEEEecCCC----------eEEEEEEe
Confidence 667777 78999999999 8777543 4544 789999999999999999986 99999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-18 Score=155.31 Aligned_cols=273 Identities=11% Similarity=0.174 Sum_probs=185.4
Q ss_pred ceEEEeecc---ceehhhhccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 97 KIIEIVAAR---DIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 97 ~V~EIv~a~---dii~~L~~sG~c~af~~~t~~~ic~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
.|.-+.... .+++.-...|....||..+++..+.+.. .+..-|.++=++..+..++.++ ..|. .++. -++
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--~~d~--~i~i--wd~ 148 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS--SIRG--ATTL--RDF 148 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE--ETTT--EEEE--EET
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE--eCCC--EEEE--EEC
Confidence 444444442 4677777889999999999999998874 6788899999988554555422 2332 2222 222
Q ss_pred hhhhhCCCCCCCcceeecc--cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCE-E
Q 015220 173 EYIRRGKPDAGFALFESES--LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGI-M 246 (411)
Q Consensus 173 ~~i~~gk~~~~~~LF~~~~--l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~-~ 246 (411)
+ ++ ....+.... -...--+.|. ++|+.|+....|++++|||+ +.+++.++..+ .|..+.++ +|. +
T Consensus 149 ~----~~---~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 149 S----GS---VIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp T----SC---EEEEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred C----CC---ceEEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 1 11 000111100 0112345665 58889999999999999999 67788888754 89999999 565 6
Q ss_pred EEEEecCCCceeeEEEEecC----CcEEeEeeeccccCCcceeeeeec-ce--eEEeecCceeeEEEcccceEEE-e---
Q 015220 247 LLIFTKASGHVPLKILSIED----GTVLKSFNHLLHRNKKVDFIEQFN-EK--LLVKQENENLQILDVRNFELTE-V--- 315 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~t----G~~L~t~~~LL~h~K~I~FLE~~~-ek--llIKQe~~~LkI~dL~t~e~~~-v--- 315 (411)
|++.... -.|+||++.+ ++++.+ ++|..+|..+..++ ++ ++....+..|++||+.+++... +
T Consensus 220 l~s~~~d---~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 220 MATSSVD---ATVKLWDLRNIKDKNSYIAE----MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp EEEEETT---SEEEEEEGGGCCSTTCEEEE----EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred EEEEeCC---CEEEEEeCCCCCcccceEEE----ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 6665443 2589999999 666665 47899999999988 44 4555677999999999977643 1
Q ss_pred eccccCCCce----------EEEEeec--eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEE
Q 015220 316 SRTEFMTPSA----------FIFLYEN--QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (411)
Q Consensus 316 ~~T~f~hpsA----------fifLy~s--qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ii 381 (411)
+...+.|... ++++..+ ..+ ++ .|++|++||+. |+++.++.+|.. ...++.+..+|||++|+
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~---~~~~~~~~~s~~g~~l~ 368 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNA---AGIISLNKFSPTGDVLA 368 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTB---CSCCCEEEECTTSSEEE
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCC---CceEEEEEEecCccEEE
Confidence 1111112221 2222221 112 44 79999999998 999999998541 12677789999999999
Q ss_pred EEecCCCCCccccCCceEEEeeecc
Q 015220 382 SYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 382 S~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+++ |. +|+|||+.+
T Consensus 369 s~s-d~----------~i~iw~~~~ 382 (383)
T 3ei3_B 369 SGM-GF----------NILIWNRED 382 (383)
T ss_dssp EEE-TT----------EEEEEECC-
T ss_pred Eec-CC----------cEEEEecCC
Confidence 997 76 999999975
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-17 Score=144.95 Aligned_cols=274 Identities=11% Similarity=0.099 Sum_probs=197.5
Q ss_pred cccceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeee
Q 015220 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (411)
Q Consensus 94 ~RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 171 (411)
-..+|.-+... ..++++-...|...+||..+++.+..+.. +..-|.++-++...+.|++.| .|. .++.-
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~---~dg--~i~iw--- 101 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGS---ADY--SIKLW--- 101 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTT--EEEEE---
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEe---CCC--eEEEE---
Confidence 34556665554 34666667789999999999999888864 455688898888777666543 222 22222
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCC-----CeEEEEEeeCceEE-----------EEeccC-
Q 015220 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTML-----------YSISDK- 234 (411)
Q Consensus 172 ~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~d-----s~ykVWdL~~Ys~i-----------ysLs~~- 234 (411)
++..|+ .+..-..-..+--+.|+ ++|+.++....+ +.++|||+.+.+.. ..+..+
T Consensus 102 --d~~~~~-----~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 102 --DVSNGQ-----CVATWKSPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp --ETTTCC-----EEEEEECSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred --ECCCCc-----EEEEeecCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 222222 12221111223345665 477888888877 99999999987522 222211
Q ss_pred ---ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC-CcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEc
Q 015220 235 ---NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDV 307 (411)
Q Consensus 235 ---~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t-G~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL 307 (411)
.+..+.++ +|.+|++.... -.|.+|++.+ ++.+.. +-+|..+|..+..++++. +....+..|++||+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKD---GKISKYDVSNNYEYVDS---IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETT---SEEEEEETTTTTEEEEE---EECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccceeEEEEcCCCCEEEEEcCC---CEEEEEECCCCcEeEEE---EecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 78888898 78777776543 3689999999 788887 557889999999988764 45567889999999
Q ss_pred ccceEEEeeccccCCCceEEEEeec---eeEEEE-ecC--------------eEEEEecC-CceeeeeccccccCCCCcc
Q 015220 308 RNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNR--------------TVAVWNFR-GELVTSFEDHLLWHPDCNT 368 (411)
Q Consensus 308 ~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~--------------tI~iWn~~-Gel~~s~e~H~~~~~~c~~ 368 (411)
.+++.... +.++..+..+..+ +.+++. .++ ++.+||.. |+++..+.+|.. .+
T Consensus 248 ~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~v 318 (369)
T 3zwl_B 248 STLQVLKK----YETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG-----PL 318 (369)
T ss_dssp TTCCEEEE----EECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS-----CE
T ss_pred CCCceeee----ecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC-----cE
Confidence 99988863 2256666666655 555555 555 89999999 999999999988 89
Q ss_pred ceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 369 NNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 369 n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.+.++|||++|++++.|. +|+|||+.+|+.
T Consensus 319 ~~~~~s~~~~~l~s~~~dg----------~v~iw~~~~~~~ 349 (369)
T 3zwl_B 319 NTVAISPQGTSYASGGEDG----------FIRLHHFEKSYF 349 (369)
T ss_dssp EEEEECTTSSEEEEEETTS----------EEEEEEECHHHH
T ss_pred EEEEECCCCCEEEEEcCCC----------eEEEEECccccc
Confidence 9999999999999999997 999999998864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-18 Score=159.27 Aligned_cols=287 Identities=12% Similarity=0.099 Sum_probs=193.5
Q ss_pred ccceEEEeecc---ceehhhhccccceeeeccc---cc-EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeee
Q 015220 95 RSKIIEIVAAR---DIVFALAQSGVCAAFCRET---NQ-RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRC 167 (411)
Q Consensus 95 RS~V~EIv~a~---dii~~L~~sG~c~af~~~t---~~-~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~c 167 (411)
...|..+.+.. .+++.-...|....||..+ ++ +.|.+...+..-|.+|-++...+.|++.| .|. .++.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~dg--~i~v 137 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS---KDG--QIIV 137 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE---TTS--EEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe---CCC--EEEE
Confidence 35676666655 4777777889999999877 54 22333334677899999998776666543 222 2332
Q ss_pred EeeehhhhhhCCCCCCC--cceeecccC---CCCeEE----eeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc----C
Q 015220 168 RSTRIEYIRRGKPDAGF--ALFESESLK---WPGFVE----FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K 234 (411)
Q Consensus 168 r~~~~~~i~~gk~~~~~--~LF~~~~l~---~PgfvE----FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~----~ 234 (411)
-.+ +.-..|+.-.-. ..-....+. +.+++- +..++|..|+....|++++|||+++.+++.++.. .
T Consensus 138 wd~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 138 LKV--NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEE--EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEe--ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 222 111111110000 000000000 111111 1346899999999999999999999999999975 4
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec----cee--EEeecCceeeEEEc
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN----EKL--LVKQENENLQILDV 307 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~----ekl--lIKQe~~~LkI~dL 307 (411)
.|..+.++ +|.+|++..... -|+||++.+|++++++. ++|..+|..+...+ ++. +....+..|+|||+
T Consensus 216 ~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTRG---IIDIWDIRFNVLIRSWS--FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CEEEEEECTTSCEEEEEETTS---CEEEEETTTTEEEEEEB--CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred ceEEEEECCCCCEEEEEcCCC---eEEEEEcCCccEEEEEe--cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 89999999 888888776553 48999999999999854 37778999995554 443 44456788999999
Q ss_pred ccceEEEeeccc---------------------cC--CCceEEEEeec--eeEEEE-ecCeEEEEecC-Cceeeeecccc
Q 015220 308 RNFELTEVSRTE---------------------FM--TPSAFIFLYEN--QLFLTF-RNRTVAVWNFR-GELVTSFEDHL 360 (411)
Q Consensus 308 ~t~e~~~v~~T~---------------------f~--hpsAfifLy~s--qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~ 360 (411)
.+++....-... .+ |...+.+++.+ ++++|+ .|++|++||++ |+++.++.+|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 999987732211 11 33344444443 788888 79999999999 99999888852
Q ss_pred cc--------------------------------CCCCccceEEEcCC--CCEEEEEecCCCCCccccCCceEEEee
Q 015220 361 LW--------------------------------HPDCNTNNIYITSD--QDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 361 ~~--------------------------------~~~c~~n~i~Is~D--qd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.. ...-.++.|.++++ +.+|+||+.|. +|+||+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG----------~I~iw~ 437 (437)
T 3gre_A 371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSG----------LIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTS----------CEEEEC
T ss_pred ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCc----------eEEEeC
Confidence 10 01237888999998 88999999996 999995
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-18 Score=163.28 Aligned_cols=183 Identities=13% Similarity=0.222 Sum_probs=158.1
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCC
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K 281 (411)
+|+.|+.++.|++++|||+.+.+++.++..+ .|..+.. +|.+|++.... -.|+||++++|+.+.+ +-+|..
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~d---g~i~vwd~~~~~~~~~---~~~h~~ 214 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSD---STVRVWDVNTGEMLNT---LIHHCE 214 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETT---SCEEEEESSSCCEEEE---ECCCCS
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCC---CeEEEEECCCCcEEEE---EcCCCC
Confidence 6889999999999999999999999999866 6877777 67777777544 3589999999999998 568999
Q ss_pred cceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-Cceeeeecc
Q 015220 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELVTSFED 358 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e~ 358 (411)
+|..+...++.++....+..|++||+.+++......+..+|..++.++... +.++++ .|++|++||++ |+++.++.+
T Consensus 215 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 294 (435)
T 1p22_A 215 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294 (435)
T ss_dssp CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcC
Confidence 999999999989999999999999999998775555778899888888765 667777 79999999999 999999999
Q ss_pred ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 359 H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|.. .+..+.. +++++++|+.|. +|++||+.+|+++
T Consensus 295 ~~~-----~v~~~~~--~~~~l~~g~~dg----------~i~iwd~~~~~~~ 329 (435)
T 1p22_A 295 HKR-----GIACLQY--RDRLVVSGSSDN----------TIRLWDIECGACL 329 (435)
T ss_dssp CSS-----CEEEEEE--ETTEEEEEETTS----------CEEEEETTTCCEE
T ss_pred CCC-----cEEEEEe--CCCEEEEEeCCC----------eEEEEECCCCCEE
Confidence 987 5655555 789999999987 9999999999875
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-17 Score=145.84 Aligned_cols=257 Identities=11% Similarity=0.090 Sum_probs=185.9
Q ss_pred hccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeec
Q 015220 112 AQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE 190 (411)
Q Consensus 112 ~~sG~c~af~~~t~~~ic~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~ 190 (411)
+.-|....||..||+.+..+.. .+...|.++-++...+.|++.| .|. .++.- ++..|+ ++..
T Consensus 42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs---~Dg--~v~iw-----~~~~~~-----~~~~-- 104 (318)
T 4ggc_A 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---SSA--EVQLW-----DVQQQK-----RLRN-- 104 (318)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---TTS--EEEEE-----ETTTTE-----EEEE--
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE---CCC--cEEEe-----ecCCce-----eEEE--
Confidence 4467789999999998888875 5677899999999888777643 222 22222 222222 1221
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce-EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
.-.|.+.+..-..++..|++...++..++|+..+.. .+..+..+ .+..+..+ +|.+|+...... .|+||++.+
T Consensus 105 ~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN---LVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEESSC
T ss_pred ecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc---ceeEEECCC
Confidence 123555666666778999999999999999998854 55666644 77888888 777777655443 489999999
Q ss_pred CcEEeEee-eccccCCcceeeeeecce--e-EEe--ecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEE
Q 015220 267 GTVLKSFN-HLLHRNKKVDFIEQFNEK--L-LVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLT 337 (411)
Q Consensus 267 G~~L~t~~-~LL~h~K~I~FLE~~~ek--l-lIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlS 337 (411)
|+...... ....+..+|..+..++.. + .+. +.+..|++||..+++..... .+...+..+... +.+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc----cceeeeeeeeecccccceEE
Confidence 98654322 345667788888776543 2 233 35578999999999887632 233444443333 33333
Q ss_pred --E-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 338 --F-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 338 --f-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+ .|++|+|||++ |+++.+|++|.. .++.+.++|||.+|+|||.|. +|+|||+..+
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~-----~V~~l~~spdg~~l~S~s~D~----------~v~iWd~~~~ 316 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTS-----RVLSLTMSPDGATVASAAADE----------TLRLWRCFEL 316 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSCEEEEETTT----------EEEEECCSCC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEecCC----------eEEEEECCCC
Confidence 3 68999999999 999999999998 899999999999999999997 9999999765
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-18 Score=160.73 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=198.8
Q ss_pred ceEEEeeccc---eehhhhccccceeeecccccEEEEEeC---CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEee
Q 015220 97 KIIEIVAARD---IVFALAQSGVCAAFCRETNQRICFLNV---TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (411)
Q Consensus 97 ~V~EIv~a~d---ii~~L~~sG~c~af~~~t~~~ic~lN~---s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~ 170 (411)
.|..+-...| ++++-...|....||..+++.+..+.. .+..-|.++-++ ..+.|++.+ .|. .++.-
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d~--~i~~w-- 279 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG---ADA--TIRVW-- 279 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE---TTS--EEEEE--
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc---CCC--cEEEE--
Confidence 5777776644 788888899999999999999999955 778889999998 555555533 222 22222
Q ss_pred ehhhhhhCCCCCCCcceeec---ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeE-------
Q 015220 171 RIEYIRRGKPDAGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQE------- 238 (411)
Q Consensus 171 ~~~~i~~gk~~~~~~LF~~~---~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~Vqe------- 238 (411)
+++.|+.- .-|... .-..+--+.|. +|..++....++.+++||+.+.+++.++..+ .|..
T Consensus 280 ---d~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~ 351 (615)
T 1pgu_A 280 ---DVTTSKCV---QKWTLDKQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLI 351 (615)
T ss_dssp ---ETTTTEEE---EEEECCTTCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTE
T ss_pred ---ECCCCcEE---EEEcCCCCcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcE
Confidence 12222110 001100 00111123343 7888888889999999999998888887643 3333
Q ss_pred --------------------------EEEeCCEEEEEEecCC-------------------------------CceeeEE
Q 015220 239 --------------------------IKISPGIMLLIFTKAS-------------------------------GHVPLKI 261 (411)
Q Consensus 239 --------------------------IkISdG~~Lai~q~t~-------------------------------~~ipiKI 261 (411)
+.++++.+|++..... ..-.+.+
T Consensus 352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (615)
T 1pgu_A 352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431 (615)
T ss_dssp EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence 3333233333222111 2234567
Q ss_pred EEecCCcEEeEeeeccccCCcceeeeeecceeEEeec-CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEE
Q 015220 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLT 337 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe-~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlS 337 (411)
|++.+|+.+.++ .+..++..++.+++.++.... +..|++||+.+++... .+...|+..+..++.+ +++++
T Consensus 432 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~ 505 (615)
T 1pgu_A 432 LQSFTGDIIKSV----RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAA 505 (615)
T ss_dssp EETTTCCEEEEE----ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEE
T ss_pred EeccCCceeeec----ccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc--cccCCccCceEEEEECCCCCEEEE
Confidence 777788888874 467889999999777778888 9999999999998764 4777899999999986 67777
Q ss_pred E-ecCeEEEEecC-Cceeeeecc-ccccCCCCccceEEEcC----------CCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 338 F-RNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITS----------DQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 338 f-sd~tI~iWn~~-Gel~~s~e~-H~~~~~~c~~n~i~Is~----------Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+ .|++|++||+. |+++.++.+ |.. .++.+..+| |+++|++++.|. +|.|||+
T Consensus 506 ~~~dg~i~iw~~~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg----------~i~iw~~ 570 (615)
T 1pgu_A 506 GDVMGKILLYDLQSREVKTSRWAFRTS-----KINAISWKPAEKGANEEEIEEDLVATGSLDT----------NIFIYSV 570 (615)
T ss_dssp EETTSCEEEEETTTTEEEECCSCCCSS-----CEEEEEECCCC------CCSCCEEEEEETTS----------CEEEEES
T ss_pred cCCCCeEEEeeCCCCcceeEeecCCCC-----ceeEEEEcCccccccccccCCCEEEEEcCCC----------cEEEEEC
Confidence 7 78999999998 999999999 987 899999999 999999999997 9999999
Q ss_pred cce-eee
Q 015220 405 MFV-TCK 410 (411)
Q Consensus 405 ~tG-k~~ 410 (411)
.+| +++
T Consensus 571 ~~~~~~~ 577 (615)
T 1pgu_A 571 KRPMKII 577 (615)
T ss_dssp SCTTCCE
T ss_pred CCCceec
Confidence 998 543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=159.52 Aligned_cols=187 Identities=15% Similarity=0.155 Sum_probs=150.8
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-C--CEEEEEEecCCCceeeEEEEecCCc--
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-P--GIMLLIFTKASGHVPLKILSIEDGT-- 268 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-d--G~~Lai~q~t~~~ipiKIl~I~tG~-- 268 (411)
+.|+ ++|+.|+.++.|+++||||+++.+ ++.++.++ .|..+..+ | |.+|+....-. -|+||++++|+
T Consensus 19 v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~---~v~iWd~~~~~~~ 94 (316)
T 3bg1_A 19 AQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR---KVIIWREENGTWE 94 (316)
T ss_dssp EEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS---CEEEECCSSSCCC
T ss_pred eeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC---EEEEEECCCCcce
Confidence 4676 689999999999999999999865 57788765 89999997 3 78888776443 38999999995
Q ss_pred EEeEeeeccccCCcceeeeeecc--e--eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec------------
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFNE--K--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN------------ 332 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~e--k--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s------------ 332 (411)
.+.+ +-+|..+|..+..+++ + +...+.+..|++||+.++....+..+.-+|...+..+..+
T Consensus 95 ~~~~---~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 95 KSHE---HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp EEEE---ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------C
T ss_pred EEEE---ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccc
Confidence 4444 5689999999999986 3 3455678999999999876555445666677666555432
Q ss_pred --------eeEEEE-ecCeEEEEecC-C---ceeeeeccccccCCCCccceEEEcCCC----CEEEEEecCCCCCccccC
Q 015220 333 --------QLFLTF-RNRTVAVWNFR-G---ELVTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKADSDDPLAEG 395 (411)
Q Consensus 333 --------qlFlSf-sd~tI~iWn~~-G---el~~s~e~H~~~~~~c~~n~i~Is~Dq----d~iiS~~~d~~~~~~~~~ 395 (411)
++|+|+ .|++|++||++ + .++.+|++|.. .++.+..+||+ .+|+|+|.|.
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~-----~V~~v~~sp~~~~~~~~las~s~D~-------- 238 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD-----WVRDVAWAPSIGLPTSTIASCSQDG-------- 238 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS-----CEEEEECCCCSSCSCCEEEEEETTC--------
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC-----ceEEEEecCCCCCCCceEEEEcCCC--------
Confidence 478888 79999999998 3 37789999998 79999999997 8999999997
Q ss_pred CceEEEeeecc
Q 015220 396 NGKLFVSLLMF 406 (411)
Q Consensus 396 ~gtI~i~~i~t 406 (411)
+|+|||+.+
T Consensus 239 --~v~iw~~~~ 247 (316)
T 3bg1_A 239 --RVFIWTCDD 247 (316)
T ss_dssp --EEEEEECSS
T ss_pred --eEEEEEccC
Confidence 999999987
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=157.84 Aligned_cols=266 Identities=14% Similarity=0.114 Sum_probs=190.7
Q ss_pred hccccceeeecccccEE-EEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee-
Q 015220 112 AQSGVCAAFCRETNQRI-CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES- 189 (411)
Q Consensus 112 ~~sG~c~af~~~t~~~i-c~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~- 189 (411)
...|....||..+++.. +........-|.++-++....-|++.+ .|. .++...+ +....|. .++..-
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg--~v~vw~~--~~~~~~~----~~~~~~~ 110 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL---DNG--SLELYST--NEANNAI----NSMARFS 110 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE---SSS--CEEEECC--SSTTSCC----CEEEECC
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEc---cCC--eEEEeec--ccccccc----cchhhcc
Confidence 56678899998887632 233335677899999988777665533 222 2222222 1111110 111111
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce------EEEEe---c--cCceeEEEEe-C-CEEEEEEecCCCc
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT------MLYSI---S--DKNVQEIKIS-P-GIMLLIFTKASGH 256 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys------~iysL---s--~~~VqeIkIS-d-G~~Lai~q~t~~~ 256 (411)
..-...--+.|...++..|+....|++++|||+.+.+ ..+.+ . ...|..+.++ + +.+|++....
T Consensus 111 ~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 187 (416)
T 2pm9_A 111 NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS--- 187 (416)
T ss_dssp CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS---
T ss_pred CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC---
Confidence 0111223477877668999999999999999999987 44444 2 3389999999 4 5777765443
Q ss_pred eeeEEEEecCCcEEeEeeec---cccCCcceeeeeecce--e-EEeecCc---eeeEEEcccc-eEEEeecccc-CCCce
Q 015220 257 VPLKILSIEDGTVLKSFNHL---LHRNKKVDFIEQFNEK--L-LVKQENE---NLQILDVRNF-ELTEVSRTEF-MTPSA 325 (411)
Q Consensus 257 ipiKIl~I~tG~~L~t~~~L---L~h~K~I~FLE~~~ek--l-lIKQe~~---~LkI~dL~t~-e~~~v~~T~f-~hpsA 325 (411)
-.|+||++.+++.+.++... .+|..+|..+..++++ + +...++. .|++||+.++ +... +.. .|...
T Consensus 188 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~---~~~~~~~~~ 264 (416)
T 2pm9_A 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ---TLNQGHQKG 264 (416)
T ss_dssp SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB---CCCSCCSSC
T ss_pred CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE---EeecCccCc
Confidence 34999999999999985521 1227899999999975 3 4455565 9999999997 4443 454 68888
Q ss_pred EEEEeec----eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCC-CEEEEEecCCCCCccccCCce
Q 015220 326 FIFLYEN----QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNGK 398 (411)
Q Consensus 326 fifLy~s----qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~~d~~~~~~~~~~gt 398 (411)
+..+..+ +++++. .|++|++||++ |+++.++.+|.. .+..+..+||+ .+|++++.|. +
T Consensus 265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~l~s~~~d~----------~ 329 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN-----WCFKTKFAPEAPDLFACASFDN----------K 329 (416)
T ss_dssp EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS-----CCCCEEECTTCTTEEEECCSSS----------E
T ss_pred eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC-----ceEEEEECCCCCCEEEEEecCC----------c
Confidence 8888764 678888 78999999999 999999999988 78999999999 8999999997 9
Q ss_pred EEEeeecceee
Q 015220 399 LFVSLLMFVTC 409 (411)
Q Consensus 399 I~i~~i~tGk~ 409 (411)
|+|||+.+++.
T Consensus 330 i~iw~~~~~~~ 340 (416)
T 2pm9_A 330 IEVQTLQNLTN 340 (416)
T ss_dssp EEEEESCCCCC
T ss_pred EEEEEccCCCC
Confidence 99999998874
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-18 Score=155.90 Aligned_cols=287 Identities=9% Similarity=0.094 Sum_probs=198.9
Q ss_pred cccceEEEeec--cceehhhhccccceeeeccc----ccEEEEEeCCCCceEEEEEeecC-CCeEEEEEeEecCCCceee
Q 015220 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRET----NQRICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLR 166 (411)
Q Consensus 94 ~RS~V~EIv~a--~dii~~L~~sG~c~af~~~t----~~~ic~lN~s~~evIrsifyN~~-n~slI~vSv~~sd~~s~L~ 166 (411)
...+|..+-.. ..++++-...|....||..+ .+.+..+. .+..-|.++-++.. .+-|++.| .|.
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~---~dg----- 136 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGG---NNG----- 136 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEEC---SSS-----
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEc---CCC-----
Confidence 34567777665 34666667789999999887 34555655 45566788888887 44444422 222
Q ss_pred eEeeehhhhhhCCCCC-CCcceee-cccC---CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--------
Q 015220 167 CRSTRIEYIRRGKPDA-GFALFES-ESLK---WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------- 233 (411)
Q Consensus 167 cr~~~~~~i~~gk~~~-~~~LF~~-~~l~---~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-------- 233 (411)
.+.+=++..++... ....+.. .... ..--+.|...++..|+.+..|++++|||+++.+++.++..
T Consensus 137 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 137 --EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp --CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred --eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence 12222333332100 0011111 1111 2335788777789999999999999999999999988884
Q ss_pred CceeEEEEe-CC-EEEEEEecCCCceeeEEEEecCC-cEEeEeeecc-ccCCcceeeeeec-ce--eEEeecCceeeEEE
Q 015220 234 KNVQEIKIS-PG-IMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLL-HRNKKVDFIEQFN-EK--LLVKQENENLQILD 306 (411)
Q Consensus 234 ~~VqeIkIS-dG-~~Lai~q~t~~~ipiKIl~I~tG-~~L~t~~~LL-~h~K~I~FLE~~~-ek--llIKQe~~~LkI~d 306 (411)
..|..+.++ +| .+|++.......-.|+||++.++ +++.. +- +|..+|..+..++ +. ++....+..|++||
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC---CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE---eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 469999999 44 57777766555557999999998 56665 44 7999999999986 44 35555788999999
Q ss_pred cccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC-Cceeeeecc--------------------cc
Q 015220 307 VRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR-GELVTSFED--------------------HL 360 (411)
Q Consensus 307 L~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~-Gel~~s~e~--------------------H~ 360 (411)
+.+++... +.-.|...+..++.+ +++++. .|++|++|+++ +....+.++ |.
T Consensus 292 ~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 292 PESAEQLS---QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp SSSCCEEE---EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred CCCCccce---eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 99999887 666777777777765 578888 79999999998 554444333 11
Q ss_pred -----------ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 361 -----------LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 361 -----------~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.|+. ..+..+..||||++|++++.|. +|+|||+.|++
T Consensus 369 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~la~~~~d~----------~v~~w~~~~~~ 416 (416)
T 2pm9_A 369 EKPSVFHLQAPTWYG-EPSPAAHWAFGGKLVQITPDGK----------GVSITNPKISG 416 (416)
T ss_dssp SCCCSSCCCCCSTTC-CCSCCCEEETTTEEECBCTTSS----------CBCCBCCCCC-
T ss_pred cccccccccCCcccc-CCccceEEeeCCeEEEEeCCCC----------eEEEEEeccCC
Confidence 1122 2456889999999999999887 99999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=149.34 Aligned_cols=275 Identities=12% Similarity=0.126 Sum_probs=200.3
Q ss_pred ccceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 95 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
...|..+... ..++++-...|....|| .+++.+..+.. +..-|.++-++..+..|++.+. |. .++. .++
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~--~i~i--wd~ 178 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF-HRAPIVSVKWNKDGTHIISMDV---EN--VTIL--WNV 178 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC-CCSCEEEEEECTTSSEEEEEET---TC--CEEE--EET
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC-CCccEEEEEECCCCCEEEEEec---CC--eEEE--EEC
Confidence 3477777766 44777778889999999 77888887764 5567899999988877776442 22 2222 211
Q ss_pred hhhhhCCCCCCCcceeec-----------ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEE
Q 015220 173 EYIRRGKPDAGFALFESE-----------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEI 239 (411)
Q Consensus 173 ~~i~~gk~~~~~~LF~~~-----------~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeI 239 (411)
..|+.-.....-... .-...--+.|.+ +++ ++....++.+++||+++.+++..+..+ .|..+
T Consensus 179 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~ 253 (425)
T 1r5m_A 179 ---ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-DDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVL 253 (425)
T ss_dssp ---TTTEEEEEECCC---------------CCCBSCCEEEE-TTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEE
T ss_pred ---CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-CCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEE
Confidence 111110000000000 000022234443 455 666778999999999999988888744 89999
Q ss_pred EEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce-eEEeecCceeeEEEcccceEEEeec
Q 015220 240 KIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNFELTEVSR 317 (411)
Q Consensus 240 kIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek-llIKQe~~~LkI~dL~t~e~~~v~~ 317 (411)
.++ +|.+|++.... -.|+||++.+++.+.. +-+|..+|..+..++++ ++....+..|++||+.+++...
T Consensus 254 ~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--- 324 (425)
T 1r5m_A 254 EFNDTNKLLLSASDD---GTLRIWHGGNGNSQNC---FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLA--- 324 (425)
T ss_dssp EEETTTTEEEEEETT---SCEEEECSSSBSCSEE---ECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEE---
T ss_pred EECCCCCEEEEEcCC---CEEEEEECCCCccceE---ecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeE---
Confidence 999 77777776543 3589999999999998 45788999999999885 4666788999999999999887
Q ss_pred cccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cc--------------------eeeeeccccccCCCCccceEE
Q 015220 318 TEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GE--------------------LVTSFEDHLLWHPDCNTNNIY 372 (411)
Q Consensus 318 T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Ge--------------------l~~s~e~H~~~~~~c~~n~i~ 372 (411)
+...|...+..+..+ +++++. .|++|.+||++ ++ ++.++.+|.. .+.++.+.
T Consensus 325 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~ 401 (425)
T 1r5m_A 325 LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD---NDYIFDLS 401 (425)
T ss_dssp EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTC---CCCEEEEE
T ss_pred ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc---CCceEEEE
Confidence 555677778777765 667777 78999999999 88 8999999844 11689999
Q ss_pred EcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 373 ITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 373 Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.+||+++|++++.|. +|.|||+.
T Consensus 402 ~s~~~~~l~~~~~dg----------~i~iw~~~ 424 (425)
T 1r5m_A 402 WNCAGNKISVAYSLQ----------EGSVVAIP 424 (425)
T ss_dssp ECTTSSEEEEEESSS----------CCEEEECC
T ss_pred ccCCCceEEEEecCc----------eEEEEeec
Confidence 999999999999886 99999985
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-18 Score=154.23 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=155.3
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
+-.++|+.|+....|++++|||+.+.+.+..+..+ .|..+.++ +|.+|++..... -|+||++.+|+.+.+ +
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~---~i~iwd~~~~~~~~~---~ 177 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDM---QLKIWSVKDGSNPRT---L 177 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCCCCEE---E
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCC---eEEEEeCCCCcCceE---E
Confidence 44678999999999999999999999999887654 89999999 888888766433 599999999999998 5
Q ss_pred cccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee-----------------------
Q 015220 277 LHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE----------------------- 331 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~----------------------- 331 (411)
-+|..+|..+..++++- +....+..+++||+.+++....-.....+...+..+..
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 58999999999998754 55567889999999999988854444445555555543
Q ss_pred -ceeEEEE-ecCeEEEEecC-Cceeeeec-cccccCCCCccceEEEcCCCC-EEEEEecCCCCCccccCCceEEEeeecc
Q 015220 332 -NQLFLTF-RNRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 332 -sqlFlSf-sd~tI~iWn~~-Gel~~s~e-~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.+.++++ .|++|++||++ |+.+..+. +|.. .+..+..+||++ +|++|+.|. +|++||+.+
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~g~~dg----------~i~vwd~~~ 322 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC-----SCNSLTVDGNNANYIYAGYENG----------MLAQWDLRS 322 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS-----CEEEEEECSSCTTEEEEEETTS----------EEEEEETTC
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCC-----CceeEEEeCCCCCEEEEEeCCC----------eEEEEEcCC
Confidence 2567777 89999999999 88777664 4655 899999999999 999999986 999999999
Q ss_pred eee
Q 015220 407 VTC 409 (411)
Q Consensus 407 Gk~ 409 (411)
|++
T Consensus 323 ~~~ 325 (420)
T 3vl1_A 323 PEC 325 (420)
T ss_dssp TTS
T ss_pred CcC
Confidence 865
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=154.38 Aligned_cols=188 Identities=11% Similarity=0.082 Sum_probs=149.9
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCC-cEEeE
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TVLKS 272 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG-~~L~t 272 (411)
-+.+++...+..+.+.++.|++++|||+++.+++.++... .|..+++++..+++..+. .++||++.++ +.+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~-----~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD-----VISVFKFGNPWKRITD 135 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT-----EEEEEESSTTCCBSSC
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcC-----EEEEEECCCCceeeEE
Confidence 4567777666666667778899999999999999988855 899999996665554432 4899999999 88887
Q ss_pred eeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEE-------------eeccccCCCceEEEEeec---ee
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTE-------------VSRTEFMTPSAFIFLYEN---QL 334 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~-------------v~~T~f~hpsAfifLy~s---ql 334 (411)
+.. +.....+.+..+.+. ..+..|++||+.+++... ...++.+|...+.+++.+ ++
T Consensus 136 ~~~------~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~ 209 (355)
T 3vu4_A 136 DIR------FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM 209 (355)
T ss_dssp CEE------EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred ecc------CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence 443 455566677666664 577899999999876110 013677899999999987 77
Q ss_pred EEEE-ecCe-EEEEecC-Cceeeeec-c-ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 335 FLTF-RNRT-VAVWNFR-GELVTSFE-D-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 335 FlSf-sd~t-I~iWn~~-Gel~~s~e-~-H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++|+ .|++ |++||++ |+++.+|. + |.. .++.+..+|||.+|+|++.|. +|+|||+.+++
T Consensus 210 l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-----~v~~~~~s~~~~~l~s~s~d~----------~v~iw~~~~~~ 273 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-----DVVDMKWSTDGSKLAVVSDKW----------TLHVFEIFNDQ 273 (355)
T ss_dssp EEEEETTCSEEEEEETTTCCEEEEEECTTCCS-----CEEEEEECTTSCEEEEEETTC----------EEEEEESSCCS
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-----cEEEEEECCCCCEEEEEECCC----------EEEEEEccCCC
Confidence 8888 7888 9999999 99999998 5 887 899999999999999999997 99999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=152.64 Aligned_cols=190 Identities=15% Similarity=0.084 Sum_probs=148.0
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-----ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-----~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
-+.|...++..|++.+.|++++|||+++ +.+..+... .|..+.++ +|.+|++.... -.|+||++ +|+.+
T Consensus 123 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 123 GMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST---GRLLLLGL-DGHEI 197 (383)
T ss_dssp EEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT---SEEEEEET-TSCEE
T ss_pred EEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCC---CCEEEEEC-CCCEE
Confidence 4678777899999999999999999997 566666543 49999999 88888877654 47999999 78888
Q ss_pred eEeeeccccCCcceeeeeecce---eEEeecCceeeEEEccc----ceEEEeeccccCCCceEEEEeec----eeEEEE-
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEK---LLVKQENENLQILDVRN----FELTEVSRTEFMTPSAFIFLYEN----QLFLTF- 338 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI~dL~t----~e~~~v~~T~f~hpsAfifLy~s----qlFlSf- 338 (411)
.+ +.+|..+|..+..++++ ++....+..|+|||+.+ ++... +. .|...+..+..+ +.+++.
T Consensus 198 ~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 198 FK---EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA---EM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp EE---EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE---EE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred EE---eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE---Ee-cCCCceEEEEEcCCCCCEEEEEc
Confidence 88 56899999999999986 34556788999999999 55654 33 588888888865 467777
Q ss_pred ecCeEEEEecC-Cceeeeeccccc------------cCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 339 RNRTVAVWNFR-GELVTSFEDHLL------------WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 339 sd~tI~iWn~~-Gel~~s~e~H~~------------~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.|++|++||++ |+.+.++.+|.. |+|+...-.+..+|||.+ +++.| |+|.|||+.
T Consensus 271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d----------~~i~iwd~~ 338 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK----------RTIDIYDAN 338 (383)
T ss_dssp SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC----------CCEEEEETT
T ss_pred CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC----------CeEEEEecC
Confidence 78999999999 999999988863 333334444555555555 44444 599999999
Q ss_pred ceeee
Q 015220 406 FVTCK 410 (411)
Q Consensus 406 tGk~~ 410 (411)
+|+++
T Consensus 339 ~~~~~ 343 (383)
T 3ei3_B 339 SGGLV 343 (383)
T ss_dssp TCCEE
T ss_pred CCcee
Confidence 99975
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=152.20 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=141.7
Q ss_pred EEEeecCCCeEEEEEeeC--ceEEEEec-c-C--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC-------CcEEeE
Q 015220 207 VLTYSAQDSIYKVFDLKN--YTMLYSIS-D-K--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED-------GTVLKS 272 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~--Ys~iysLs-~-~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t-------G~~L~t 272 (411)
.|+..+.|+++++||+++ ++.+..+. . + .|..+..+ +|.+|++..... -|+||++++ ++++.+
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~---~v~iw~~~~~~~~~~~~~~~~~ 102 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS---TVSIWAKEESADRTFEMDLLAI 102 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS---CEEEEEC-------CCCEEEEE
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC---cEEEEEcccCcCccccceeEEE
Confidence 888999999999999987 46777773 2 2 79999999 888888876543 489999964 345555
Q ss_pred eeeccccCCcceeeeeecceeEEe--ecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAV 345 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~i 345 (411)
+-+|..+|..+..++++.+|. +.+..++|||+.+ ++..+...++.+|...+..+..+ ++++|. .|++|++
T Consensus 103 ---~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~i 179 (330)
T 2hes_X 103 ---IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179 (330)
T ss_dssp ---EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred ---EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 668999999999998876555 4689999999953 33323233677899999998876 678888 7999999
Q ss_pred EecC-C--ceeeeeccccccCCCCccceEEEcCC--CCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 346 WNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSD--QDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 346 Wn~~-G--el~~s~e~H~~~~~~c~~n~i~Is~D--qd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|+.+ + +.+.+|.+|.. .+..+..+|| +..|+|++.|. +|+|||+.++
T Consensus 180 W~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~s~D~----------~v~iw~~~~~ 231 (330)
T 2hes_X 180 WKDYDDDWECVAVLNGHEG-----TVWSSDFDKTEGVFRLCSGSDDS----------TVRVWKYMGD 231 (330)
T ss_dssp EEEETTEEEEEEEECCCSS-----CEEEEEECCSSSSCEEEEEETTS----------CEEEEEEEEE
T ss_pred EECCCCCeeEEEEccCCCC-----cEEEEEecCCCCeeEEEEEeCCC----------eEEEEEecCC
Confidence 9987 5 58889999998 7999999999 77999999997 9999999887
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-16 Score=141.98 Aligned_cols=273 Identities=8% Similarity=0.022 Sum_probs=193.8
Q ss_pred ceEEEeec--cceehhhhccccceeeeccccc--EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 97 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~--~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
+|..+... ..++++-...|....||..+++ .+..+. .+..-|.++-++...+.|++.| .|. .++.-.+
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~---~dg--~i~vwd~-- 81 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCG---TDR--NAYVWTL-- 81 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEE---TTS--CEEEEEE--
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEc---CCC--eEEEEEC--
Confidence 34444433 2356666678999999999988 555665 4666889999999777776644 222 2333322
Q ss_pred hhhhhCCCCCCCcceeecccCCC---CeEEeeCCCCeEEEeecCCCeEEEEEeeCceE---EEEec---cCceeEEEEe-
Q 015220 173 EYIRRGKPDAGFALFESESLKWP---GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS---DKNVQEIKIS- 242 (411)
Q Consensus 173 ~~i~~gk~~~~~~LF~~~~l~~P---gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~---iysLs---~~~VqeIkIS- 242 (411)
..++ .........+. -.+.|. ++|+.|+....++.++|||+.+.+. +..+. ...|..+.++
T Consensus 82 ---~~~~-----~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 82 ---KGRT-----WKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp ---ETTE-----EEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred ---CCCe-----eeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 1111 01111111222 245665 4788999999999999999999762 34442 3489999999
Q ss_pred CCEEEEEEecCCCceeeEEEEe------------------cCCcEEeEeeeccccCCcceeeeeecce--eEEeecCcee
Q 015220 243 PGIMLLIFTKASGHVPLKILSI------------------EDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQENENL 302 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I------------------~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQe~~~L 302 (411)
+|.+|++.... -.++||++ .+|+++.+ +-+|..+|..+..++++ ++....+..|
T Consensus 153 ~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 153 NSVLLAAGSCD---FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE---SSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp TSSEEEEEETT---SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE---CCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred CCCEEEEEcCC---CCEEEEEcccccccccccccccccccchhhheEe---cCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 78888776543 35799994 58899988 55889999999998875 4556688899
Q ss_pred eEEEcccceEEEeeccccCCCceEEEEeec---eeEEEEecCeEEEEecCC-----cee---------------------
Q 015220 303 QILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTFRNRTVAVWNFRG-----ELV--------------------- 353 (411)
Q Consensus 303 kI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSfsd~tI~iWn~~G-----el~--------------------- 353 (411)
++||+.+++... +.-.|...+..++.+ ++++++.|++|.+|+++. .++
T Consensus 227 ~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (372)
T 1k8k_C 227 CLADADKKMAVA---TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 303 (372)
T ss_dssp EEEEGGGTTEEE---EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHH
T ss_pred EEEECCCCceeE---EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhh
Confidence 999999999887 555677677776655 778888999999999985 222
Q ss_pred ---------------eee-ccccccCCCCccceEE-EcCCC---CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 354 ---------------TSF-EDHLLWHPDCNTNNIY-ITSDQ---DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 354 ---------------~s~-e~H~~~~~~c~~n~i~-Is~Dq---d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..+ .+|.. .++.+. .++|| .+|+|++.|. +|+|||+.+|+-+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~g~~~~~l~s~~~Dg----------~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 304 NLDKKASSEGSAAAGAGLDSLHKN-----SVSQISVLSGGKAKCSQFCTTGMDG----------GMSIWDVRSLESA 365 (372)
T ss_dssp HCCCCC---------CCCSSSSSS-----CEEEEEEEESTTTSCSEEEEEETTS----------EEEEEEHHHHHHH
T ss_pred hcccccccccCccccccccccccC-----CcceeEEecCCCcceeeEEEecCCC----------ceEEEEecChhHh
Confidence 222 36666 788886 56888 9999999997 9999999998743
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-17 Score=151.33 Aligned_cols=260 Identities=12% Similarity=0.109 Sum_probs=186.8
Q ss_pred hhhccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCccee
Q 015220 110 ALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE 188 (411)
Q Consensus 110 ~L~~sG~c~af~~~t~~~ic~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~ 188 (411)
|.+.-+....||..||+.+..+.. .+...|.||=++...+-|++.| .|. .++. - ++..|+ ++..
T Consensus 120 Avgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs---~Dg--~v~i--W---d~~~~~-----~~~~ 184 (420)
T 4gga_A 120 AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT---SSA--EVQL--W---DVQQQK-----RLRN 184 (420)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE---TTS--CEEE--E---ETTTTE-----EEEE
T ss_pred EEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE---CCC--eEEE--E---EcCCCc-----EEEE
Confidence 344567889999999998877775 5667899999999777666533 222 2222 2 222222 1211
Q ss_pred ecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce-EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEe
Q 015220 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 189 ~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I 264 (411)
.-.|.+.+---..|+..|+.+..|+++++||..... .+.++..+ .+..+..+ +|.+|+.....+ .++||++
T Consensus 185 --~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~---~v~i~~~ 259 (420)
T 4gga_A 185 --MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN---LVNVWPS 259 (420)
T ss_dssp --ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEES
T ss_pred --EeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccc---cceEEee
Confidence 112444444344578999999999999999998744 56667654 88888888 788777765443 5799999
Q ss_pred cCCcEEeE-eeeccccCCcceeeeeeccee-EEe----ecCceeeEEEcccceEEEeeccccCCCceEEEEeec----ee
Q 015220 265 EDGTVLKS-FNHLLHRNKKVDFIEQFNEKL-LVK----QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QL 334 (411)
Q Consensus 265 ~tG~~L~t-~~~LL~h~K~I~FLE~~~ekl-lIK----Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----ql 334 (411)
.+|+.... ......|...|..+..++..- ++. +.+..|++||+.+++... +.. +...+..+..+ ++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~---~~~-~~~~v~~~~~~~~~~~l 335 (420)
T 4gga_A 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS---AVD-AHSQVCSILWSPHYKEL 335 (420)
T ss_dssp SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE---EEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce---eec-cccceeeeeecCCCCeE
Confidence 99875432 122567888898888876432 332 356899999999999887 333 33444444433 44
Q ss_pred EEEE--ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 335 FLTF--RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 335 FlSf--sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+++. .|++|.|||.+ |+++.+|.+|.. .+..+++||||++|+|||.|. +|+|||+.+..
T Consensus 336 v~~sg~~d~~I~iwd~~~~~~v~~l~gH~~-----~V~~l~~spdg~~l~S~s~D~----------tvriWdv~~~~ 397 (420)
T 4gga_A 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTS-----RVLSLTMSPDGATVASAAADE----------TLRLWRCFELD 397 (420)
T ss_dssp EEEECTTTCCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSCEEEEETTT----------EEEEECCSCSS
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEecCC----------eEEEEECCCCC
Confidence 4443 68999999999 999999999998 899999999999999999997 99999998754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-17 Score=146.91 Aligned_cols=188 Identities=14% Similarity=0.191 Sum_probs=153.2
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEee--CceEEEEeccC--ceeEEEEe-C--CEEEEEEecCCCceeeEEEEecCCc--
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSISDK--NVQEIKIS-P--GIMLLIFTKASGHVPLKILSIEDGT-- 268 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~--~Ys~iysLs~~--~VqeIkIS-d--G~~Lai~q~t~~~ipiKIl~I~tG~-- 268 (411)
+.|+ ++|+.|+.++.|++++|||+. +.+++.++..+ .|..+..+ + |.+|++..... .|+||++.+|+
T Consensus 17 ~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~ 92 (379)
T 3jrp_A 17 AVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG---KVLIWKEENGRWS 92 (379)
T ss_dssp EEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---CEEEEEEETTEEE
T ss_pred EEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC---EEEEEEcCCCcee
Confidence 3454 578899999999999999999 77888888865 89999998 5 78888776543 58999999998
Q ss_pred EEeEeeeccccCCcceeeeeecc----eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec------------
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFNE----KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN------------ 332 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~e----kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s------------ 332 (411)
.+.. +.+|..+|..+..+++ .++....+..|++||+.+++.... .+...|+..+..+..+
T Consensus 93 ~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 93 QIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp EEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE-EEEECCTTCEEEEEECCCC---------
T ss_pred Eeee---ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee-EEecCCCCceEEEEEcCccccccccccC
Confidence 5555 5678999999999987 467778899999999999843221 1445688888887753
Q ss_pred ----eeEEEE-ecCeEEEEecC-Cc----eeeeeccccccCCCCccceEEEcCC---CCEEEEEecCCCCCccccCCceE
Q 015220 333 ----QLFLTF-RNRTVAVWNFR-GE----LVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKADSDDPLAEGNGKL 399 (411)
Q Consensus 333 ----qlFlSf-sd~tI~iWn~~-Ge----l~~s~e~H~~~~~~c~~n~i~Is~D---qd~iiS~~~d~~~~~~~~~~gtI 399 (411)
++++++ .|++|++||++ +. ++.++.+|.. .++.+..+|| +++|++++.|. +|
T Consensus 169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~~~~l~s~~~dg----------~i 233 (379)
T 3jrp_A 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----WVRDVAWSPTVLLRSYLASVSQDR----------TC 233 (379)
T ss_dssp -CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-----CEEEEEECCCCSSSEEEEEEETTS----------CE
T ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-----cEeEEEECCCCCCCCeEEEEeCCC----------EE
Confidence 567777 79999999998 43 6678999988 8999999999 99999999987 99
Q ss_pred EEeeeccee
Q 015220 400 FVSLLMFVT 408 (411)
Q Consensus 400 ~i~~i~tGk 408 (411)
.|||+.+|+
T Consensus 234 ~iwd~~~~~ 242 (379)
T 3jrp_A 234 IIWTQDNEQ 242 (379)
T ss_dssp EEEEESSTT
T ss_pred EEEeCCCCC
Confidence 999999873
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=146.12 Aligned_cols=195 Identities=12% Similarity=0.131 Sum_probs=155.5
Q ss_pred CCCCe---EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 193 KWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 193 ~~Pgf---vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
.|.+- +.|. ++|+.|+.+..|++++|||+.+.+++.++..+ .|..+.++ +|.+|++.... -.|+||++.+
T Consensus 30 ~h~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~i~iwd~~~ 105 (369)
T 3zwl_B 30 GHERPLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD---YSIKLWDVSN 105 (369)
T ss_dssp CCSSCEEEEEEC-TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT---TEEEEEETTT
T ss_pred EeeceEEEEEEc-CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCC
Confidence 35554 4565 48999999999999999999999999999855 89999999 78888776543 3699999999
Q ss_pred CcEEeEeeeccccCCcceeeeeecceeEEee--cC-----ceeeEEEcccceEEE--------eeccccCCCc--eEEEE
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--EN-----ENLQILDVRNFELTE--------VSRTEFMTPS--AFIFL 329 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~-----~~LkI~dL~t~e~~~--------v~~T~f~hps--AfifL 329 (411)
|+.+.++. +..+|..+..++++.++.- .+ ..|++||+.+++... ...+...|+. .+..+
T Consensus 106 ~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 106 GQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp CCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CcEEEEee----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99999844 6789999999988764433 44 799999999874311 0012233333 66666
Q ss_pred eec---eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 330 YEN---QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 330 y~s---qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
..+ +.++++ .|++|.+||++ +.++.++..|.. .+..+..+||+++|++++.|. +|.+||
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~----------~i~v~d 246 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK-----SISDMQFSPDLTYFITSSRDT----------NSFLVD 246 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTS----------EEEEEE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC-----ceeEEEECCCCCEEEEecCCc----------eEEEEE
Confidence 655 566666 88999999999 689999999988 899999999999999999886 999999
Q ss_pred ecceeee
Q 015220 404 LMFVTCK 410 (411)
Q Consensus 404 i~tGk~~ 410 (411)
+.+|+++
T Consensus 247 ~~~~~~~ 253 (369)
T 3zwl_B 247 VSTLQVL 253 (369)
T ss_dssp TTTCCEE
T ss_pred CCCCcee
Confidence 9999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-17 Score=151.37 Aligned_cols=263 Identities=15% Similarity=0.100 Sum_probs=184.5
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
...++.-...|....||..+++....+... +++...+++...+.|++.| .|. .++.. ++..++
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~---~dg--~i~iw-----d~~~~~----- 130 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGT---TEG--DIKVL-----DSNFNL----- 130 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEEE---TTS--CEEEE-----CTTSCE-----
T ss_pred CCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEEE---CCC--CEEEE-----eCCCcc-----
Confidence 445666666788888888777654444333 6777778887776666543 222 22222 122211
Q ss_pred cceeecccCCCCe---EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCcee
Q 015220 185 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 185 ~LF~~~~l~~Pgf---vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ip 258 (411)
++- ..-.|++. +.|. ++|+.|++.+.|++++|||+.+.+++.++..+ .|..+.++ +|.+|++..... .
T Consensus 131 ~~~--~~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~ 204 (420)
T 3vl1_A 131 QRE--IDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG---T 204 (420)
T ss_dssp EEE--ETTSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS---C
T ss_pred eee--ecccccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC---c
Confidence 110 11134443 4565 47889999999999999999999999888855 89999999 788777665443 5
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeee---------------------eecce--eEEeecCceeeEEEcccceEEEe
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIE---------------------QFNEK--LLVKQENENLQILDVRNFELTEV 315 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE---------------------~~~ek--llIKQe~~~LkI~dL~t~e~~~v 315 (411)
|+||++.+|+.+.++...-.+..+|..+. .++++ ++....+..|++||+.+++....
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 89999999999999764444444444444 44554 45556788999999999987662
Q ss_pred eccccCCCceEEEEeec---e-eEEEE-ecCeEEEEecC-Cc-eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 316 SRTEFMTPSAFIFLYEN---Q-LFLTF-RNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 316 ~~T~f~hpsAfifLy~s---q-lFlSf-sd~tI~iWn~~-Ge-l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
..-.|...+..+..+ + +++++ .|++|++||++ |+ ++.++.+|.. ..++.++ ++|+.+|+|++.|.
T Consensus 285 --~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~----~~v~~~~-~~~~~~l~s~~~d~- 356 (420)
T 3vl1_A 285 --LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG----TPINNVY-FAAGALFVSSGFDT- 356 (420)
T ss_dssp --ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT----SCEEEEE-EETTEEEEEETTTE-
T ss_pred --cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC----CCceEEE-eCCCCEEEEecCCc-
Confidence 223477788888766 3 78888 78999999999 64 6889988644 2566664 56899999999886
Q ss_pred CCccccCCceEEEeeecce
Q 015220 389 DDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~tG 407 (411)
+|++||+.++
T Consensus 357 ---------~v~iw~~~~~ 366 (420)
T 3vl1_A 357 ---------SIKLDIISDP 366 (420)
T ss_dssp ---------EEEEEEECCT
T ss_pred ---------cEEEEeccCC
Confidence 9999998873
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-16 Score=142.83 Aligned_cols=262 Identities=11% Similarity=0.073 Sum_probs=184.8
Q ss_pred eehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc
Q 015220 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (411)
Q Consensus 107 ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L 186 (411)
++++-...|...+||..+++.+..+.... -++++-++.....|.+++ ..|. . .+..+ +..|++ +
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~--~~d~--~--i~v~d---~~~~~~-----~ 67 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVAN--AHSN--D--VSIID---TATNNV-----I 67 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEE--GGGT--E--EEEEE---TTTTEE-----E
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEEC--CCCC--e--EEEEE---CCCCeE-----E
Confidence 34445567889999999999888887543 378999998777664422 1222 2 22222 222221 1
Q ss_pred eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEe
Q 015220 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 187 F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I 264 (411)
-.-..-..|--+.|+.-+.++++.+..++.++|||+.+.+.+..+..+ .+..+.++ ||..|++.....+ -|++|++
T Consensus 68 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--~v~~~d~ 145 (391)
T 1l0q_A 68 ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK--TVSVINT 145 (391)
T ss_dssp EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT--EEEEEET
T ss_pred EEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCC--EEEEEEC
Confidence 111111156677888655556677778899999999999999888755 89999999 7776655544333 6889999
Q ss_pred cCCcEEeEeeeccccCCcceeeeeecce--eEEe-ecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEE
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLT 337 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlS 337 (411)
.+|+.+..+. ++ ..+..+..++++ +++. .++..|.+||+.+++..... .+......++.+ .++++
T Consensus 146 ~~~~~~~~~~---~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 146 VTKAVINTVS---VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV----KVEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp TTTEEEEEEE---CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----ECSSEEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEe---cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE----ecCCCccceEECCCCCEEEEE
Confidence 9999998743 23 456788888776 3344 46688999999999887632 244555555554 34555
Q ss_pred E---ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEE-EEEecCCCCCccccCCceEEEeeecceeee
Q 015220 338 F---RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 338 f---sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i-iS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
. .+++|.+||++ |+++.++..|.. ...+.++|||+.| ++++.|. +|.+||+.+|+++
T Consensus 218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~s~~~d~----------~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSFXN----------TVSVIDTATNTIT 279 (391)
T ss_dssp EECSSCCEEEEEETTTTEEEEEEECCSS------EEEEEECTTSSEEEEEETTTT----------EEEEEETTTTEEE
T ss_pred ecCcCCCcEEEEECCCCeEEEEEecCCC------ccEEEEccCCCEEEEEcCCCC----------EEEEEECCCCcEE
Confidence 4 47999999999 899999988753 5789999999977 6766665 9999999999875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-17 Score=145.59 Aligned_cols=253 Identities=12% Similarity=0.120 Sum_probs=175.4
Q ss_pred ccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCC-
Q 015220 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV- 203 (411)
Q Consensus 125 ~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~- 203 (411)
-+.+..+..++..-|.++=++..+..+++++...+.+ ..++...+ ..|+. .++.....-..---+.|...
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d-~~v~iw~~-----~~~~~---~~~~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGT-GVIQLYEI-----QHGDL---KLLREIEKAKPIKCGTFGATS 77 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCC-EEEEEEEE-----CSSSE---EEEEEEEESSCEEEEECTTCC
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCC-cEEEEEeC-----CCCcc---cceeeecccCcEEEEEEcCCC
Confidence 3445555566788888998888887777654332112 23333322 22211 01111111111123556555
Q ss_pred -CCeEEEeecCCCeEEEEEeeCce-EEEEeccC--ceeEEEE------e-CCEEEEEEecCCCceeeEEEEecCCc-EEe
Q 015220 204 -NGKVLTYSAQDSIYKVFDLKNYT-MLYSISDK--NVQEIKI------S-PGIMLLIFTKASGHVPLKILSIEDGT-VLK 271 (411)
Q Consensus 204 -NGkiLt~~~~ds~ykVWdL~~Ys-~iysLs~~--~VqeIkI------S-dG~~Lai~q~t~~~ipiKIl~I~tG~-~L~ 271 (411)
+|..|+....|+++++||+.+.+ ++..+..+ .|..+.. + +|.+|++..... .|+||++.+++ .+.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~---~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG---TVKVWDPRQKDDPVA 154 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS---CEEEECTTSCSSCSE
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCC---eEEEEeCCCCCCcce
Confidence 38999999999999999999988 88888755 7888854 4 677777765433 58999999998 677
Q ss_pred Eeeecccc-CCcceeee----e--ecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec------eeEEEE
Q 015220 272 SFNHLLHR-NKKVDFIE----Q--FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN------QLFLTF 338 (411)
Q Consensus 272 t~~~LL~h-~K~I~FLE----~--~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s------qlFlSf 338 (411)
++...-++ ..++..+. . .+..++...++..|++||+.+++... ...|+..+..+..+ +.++++
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW----ETNIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEESCSSSSCCEEEEE
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee----ecCCCCceEEEEcCCCCCCCCEEEEE
Confidence 75432222 44777776 2 33444556678899999999999854 34567777777654 567777
Q ss_pred -ecCeEEEEecC-Cceeeeec-----cccccCCCCccceEEEcCCCC-EEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 339 -RNRTVAVWNFR-GELVTSFE-----DHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 -sd~tI~iWn~~-Gel~~s~e-----~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.|++|.+||++ ++++.++. +|.. .+..+..+||+. ++++++.|. +|+|||+.+++
T Consensus 231 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~ 293 (357)
T 3i2n_A 231 SLEGKFHVFDMRTQHPTKGFASVSEKAHKS-----TVWQVRHLPQNRELFLTAGGAG----------GLHLWKYEYPI 293 (357)
T ss_dssp ESTTEEEEEEEEEEETTTEEEEEEEECCSS-----CEEEEEEETTEEEEEEEEETTS----------EEEEEEEECCS
T ss_pred CCCCeEEEEeCcCCCcccceeeeccCCCcC-----CEEEEEECCCCCcEEEEEeCCC----------cEEEeecCCCc
Confidence 79999999999 77777666 8877 899999999999 899999986 99999998763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=152.92 Aligned_cols=275 Identities=12% Similarity=0.105 Sum_probs=190.6
Q ss_pred ceEEEee-ccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeee----
Q 015220 97 KIIEIVA-ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR---- 171 (411)
Q Consensus 97 ~V~EIv~-a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~---- 171 (411)
.+..+.. ....+++-...|....||..+++.+..+.. +..-|.++-+ .. +++.| .|. .++.-.+.
T Consensus 300 ~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~v~~~~~-~~---l~~~~---~dg--~i~~w~~~~~~~ 369 (615)
T 1pgu_A 300 QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISG-HNKGITALTV-NP---LISGS---YDG--RIMEWSSSSMHQ 369 (615)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECC-CSSCEEEEET-TT---TEEEE---TTS--CEEETTTTEEEC
T ss_pred ceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeC-CCCCEEEEEe-cC---cEEEC---CCC--eEEEEEchhhcC
Confidence 3444443 467788888899999999999998888865 5556777777 43 44433 111 11111000
Q ss_pred -----h--------hhhhhCCCCCCCcceee---cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-
Q 015220 172 -----I--------EYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK- 234 (411)
Q Consensus 172 -----~--------~~i~~gk~~~~~~LF~~---~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~- 234 (411)
+ ..|-.+-.+..-.++.. .....|--+.| .++|+.++.. .++.+++|++.+.+.+.++...
T Consensus 370 ~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 447 (615)
T 1pgu_A 370 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASA-NNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS 447 (615)
T ss_dssp CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEE-CSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS
T ss_pred cccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEE-cCCCCEEEEe-CCCceEEEeccCCceeeecccCC
Confidence 0 00000000000001110 11112333444 3566666655 6777777877788888887754
Q ss_pred ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceE
Q 015220 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFEL 312 (411)
Q Consensus 235 ~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~ 312 (411)
.+..+.++ |.+|++..... -.|++|++.+++... ..+.+|..+|..+..++++.++. ..+..|+|||+.+++.
T Consensus 448 ~~~~~~~~-~~~l~~~~~~d--~~i~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 522 (615)
T 1pgu_A 448 PGSAVSLS-QNYVAVGLEEG--NTIQVFKLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV 522 (615)
T ss_dssp CEEEEEEC-SSEEEEEETTT--SCEEEEETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CceEEEEc-CCEEEEeecCC--CeEEEEECCCccccc--cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc
Confidence 88999999 77777766412 348999999998874 23678999999999998866554 4678999999999999
Q ss_pred EEeeccccC-CCceEEEEeec-------------eeEEEE-ecCeEEEEecC-C-ceeeeeccccccCCCCccceEEEcC
Q 015220 313 TEVSRTEFM-TPSAFIFLYEN-------------QLFLTF-RNRTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITS 375 (411)
Q Consensus 313 ~~v~~T~f~-hpsAfifLy~s-------------qlFlSf-sd~tI~iWn~~-G-el~~s~e~H~~~~~~c~~n~i~Is~ 375 (411)
.. +... |...+..++.+ ++++++ .|++|++|+++ | .++.++.+|.. .++.+..+|
T Consensus 523 ~~---~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~-----~v~~l~~s~ 594 (615)
T 1pgu_A 523 KT---SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-----GVNNLLWET 594 (615)
T ss_dssp EE---CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-----CEEEEEEEE
T ss_pred ee---EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc-----ceEEEEEcC
Confidence 87 6666 88888888863 467887 78999999999 5 79999999988 899999999
Q ss_pred CCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 376 DQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 376 Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
||. |+|++.|. +|+|||+.++
T Consensus 595 ~~~-l~s~~~d~----------~v~iw~~~~~ 615 (615)
T 1pgu_A 595 PST-LVSSGADA----------CIKRWNVVLE 615 (615)
T ss_dssp TTE-EEEEETTS----------CEEEEEEC--
T ss_pred CCC-eEEecCCc----------eEEEEeeecC
Confidence 999 99999997 9999999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-16 Score=145.94 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=137.3
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEe----------
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSI---------- 264 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I---------- 264 (411)
+.|. ++|..|++.+.|++++|||+++.+++.++..+ .|..+.+| +|..|+...... -|+||++
T Consensus 82 ~~~~-~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~ 157 (343)
T 2xzm_R 82 LALS-QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAER---EIKLWNILGECKFSSAE 157 (343)
T ss_dssp EEEC-SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTS---CEEEEESSSCEEEECCT
T ss_pred EEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCC---EEEEEeccCCceeeeec
Confidence 3564 57888999999999999999999999988865 89999999 777776654321 2444444
Q ss_pred -------------------------------------------cCCcEEeEeeeccccCCcceeeeeecceeEEe--ecC
Q 015220 265 -------------------------------------------EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QEN 299 (411)
Q Consensus 265 -------------------------------------------~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~ 299 (411)
.+++...+ +.+|..+|..+..++++.+|. ..+
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~h~~~v~~~~~s~~g~~l~sgs~d 234 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKD 234 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEE---EECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEE---EcCccccceEEEECCCCCEEEEEcCC
Confidence 23333333 457889999999998875544 578
Q ss_pred ceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEEecCeEEEEecC-Cceee--eec-----------ccccc
Q 015220 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTFRNRTVAVWNFR-GELVT--SFE-----------DHLLW 362 (411)
Q Consensus 300 ~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSfsd~tI~iWn~~-Gel~~--s~e-----------~H~~~ 362 (411)
..|+|||+.+..... ..+.+...+..++.+ +++.+..|++|++||+. ++... +++ +|..
T Consensus 235 g~v~iwd~~~~~~~~---~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 310 (343)
T 2xzm_R 235 KKLLIWDILNLTYPQ---REFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP- 310 (343)
T ss_dssp CEEEEEESSCCSSCS---EEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC-
T ss_pred CeEEEEECCCCcccc---eeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC-
Confidence 899999995433211 222244456666655 55666699999999998 65443 665 4544
Q ss_pred CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.++.++.+|||+.|++|+.|. +|++||+.||+
T Consensus 311 ----~v~~~~~sp~g~~l~sg~~Dg----------~v~~w~~~~g~ 342 (343)
T 2xzm_R 311 ----QCTSLAWNALGKKLFAGFTDG----------VIRTFSFETSA 342 (343)
T ss_dssp ----CEEEEEECSSSCCEEEEETTS----------EEEEEEEEEEE
T ss_pred ----ceEEEEECCCCCeEEEecCCc----------eEEEEEEEccC
Confidence 678999999999999999997 99999999986
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-16 Score=144.05 Aligned_cols=192 Identities=8% Similarity=0.001 Sum_probs=154.5
Q ss_pred EEeeCC---CC---eEEEeecCCCeEEEEEeeCceE-----EEEecc-------CceeEEEEe-----CCEE-EEEEecC
Q 015220 198 VEFDDV---NG---KVLTYSAQDSIYKVFDLKNYTM-----LYSISD-------KNVQEIKIS-----PGIM-LLIFTKA 253 (411)
Q Consensus 198 vEFDd~---NG---kiLt~~~~ds~ykVWdL~~Ys~-----iysLs~-------~~VqeIkIS-----dG~~-Lai~q~t 253 (411)
+.|... +| +.|++.+.|++++|||+.+.+. +..+.. ..|..+.++ +|.+ |++....
T Consensus 68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 456543 58 9999999999999999999887 777763 579999998 5666 6665443
Q ss_pred CCceeeEEEEecC------CcEEe-----Eeee----ccccCCcceeeeeecce-eEEeecCceeeEEEcccceEEEeec
Q 015220 254 SGHVPLKILSIED------GTVLK-----SFNH----LLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNFELTEVSR 317 (411)
Q Consensus 254 ~~~ipiKIl~I~t------G~~L~-----t~~~----LL~h~K~I~FLE~~~ek-llIKQe~~~LkI~dL~t~e~~~v~~ 317 (411)
-.|+||++.+ ++.+. ++.- .-.|..+|..++.++++ ++....+..|++||+.+++...
T Consensus 148 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--- 221 (397)
T 1sq9_A 148 ---GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY--- 221 (397)
T ss_dssp ---SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEE---
T ss_pred ---CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeE---
Confidence 4689999999 88777 5320 13478999999999885 3445578899999999998887
Q ss_pred cccC---C---CceEEEEeec---eeEEEE-ec---CeEEEEecC-Cceeeeecc-------------ccccCCCCccce
Q 015220 318 TEFM---T---PSAFIFLYEN---QLFLTF-RN---RTVAVWNFR-GELVTSFED-------------HLLWHPDCNTNN 370 (411)
Q Consensus 318 T~f~---h---psAfifLy~s---qlFlSf-sd---~tI~iWn~~-Gel~~s~e~-------------H~~~~~~c~~n~ 370 (411)
+.-. | ...+..+..+ +++++. .| ++|++||++ |+++.++.+ |.. .+..
T Consensus 222 ~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~ 296 (397)
T 1sq9_A 222 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-----WVMS 296 (397)
T ss_dssp EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-----CEEE
T ss_pred EEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC-----cEEE
Confidence 4444 7 7788888765 667777 77 899999998 999999999 877 8999
Q ss_pred EEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 371 IYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 371 i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+..+||+++|++++.|. +|.|||+.+|+++
T Consensus 297 ~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 297 LSFNDSGETLCSAGWDG----------KLRFWDVKTKERI 326 (397)
T ss_dssp EEECSSSSEEEEEETTS----------EEEEEETTTTEEE
T ss_pred EEECCCCCEEEEEeCCC----------eEEEEEcCCCcee
Confidence 99999999999999886 9999999999875
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-16 Score=141.45 Aligned_cols=238 Identities=12% Similarity=0.079 Sum_probs=168.2
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe---EEeeC-CCCeEEE
Q 015220 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF---VEFDD-VNGKVLT 209 (411)
Q Consensus 134 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf---vEFDd-~NGkiLt 209 (411)
.+...|+++-++....-|++.| .|. .++.-.+. .+ .+.++- .--.|.+- +.|.. .+|..|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s---~D~--~v~iw~~~-----~~---~~~~~~--~l~gH~~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCS---SDK--TIKIFEVE-----GE---THKLID--TLTGHEGPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEE---TTS--CEEEEEBC-----SS---CBCCCE--EECCCSSCEEEEEECCGGGCSEEE
T ss_pred CCcCceEEEEECCCCCEEEEEe---CCC--EEEEEecC-----CC---CcEEEE--EEccccCCeEEEEecCCCcCCEEE
Confidence 4566788888888777666543 222 23332221 00 001111 11134444 46754 3689999
Q ss_pred eecCCCeEEEEEeeCc--eEEEEeccC--ceeEEEEeC---CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 210 YSAQDSIYKVFDLKNY--TMLYSISDK--NVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 210 ~~~~ds~ykVWdL~~Y--s~iysLs~~--~VqeIkISd---G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
+++.|++++|||+++. +.+..+..+ .|..+..+| |.+|++.... -.|+||++.++..... ..+-+|..+
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d---~~v~~wd~~~~~~~~~-~~~~~h~~~ 147 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD---GKVSVVEFKENGTTSP-IIIDAHAIG 147 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT---SEEEEEEBCSSSCBCC-EEEECCSSC
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC---CcEEEEEecCCCceee-eeeecccCc
Confidence 9999999999999986 466667643 799999995 7788876554 3589999998853321 125688999
Q ss_pred ceeeeeecc---------------eeEEeecCceeeEEEcccce-EEEeeccccCCCceEEEEeec------eeEEEE-e
Q 015220 283 VDFIEQFNE---------------KLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYEN------QLFLTF-R 339 (411)
Q Consensus 283 I~FLE~~~e---------------kllIKQe~~~LkI~dL~t~e-~~~v~~T~f~hpsAfifLy~s------qlFlSf-s 339 (411)
|..+..+++ .+.....+..++|||+.+++ ......++-+|..++..++.+ ++++|. .
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence 999988875 45666789999999999876 222334777899999999875 578888 7
Q ss_pred cCeEEEEecCC-c---eeeee--ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 340 NRTVAVWNFRG-E---LVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 340 d~tI~iWn~~G-e---l~~s~--e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|++|+|||++. . ....+ .+|.. .+..+..+|||++|+|++.|. +|+||+..
T Consensus 228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~las~~~D~----------~v~lw~~~ 284 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPD-----VLWRASWSLSGNVLALSGGDN----------KVTLWKEN 284 (297)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSS-----CEEEEEECSSSCCEEEEETTS----------CEEEEEEC
T ss_pred CCcEEEEEeCCCCCccceeeeecccCCC-----cEEEEEECCCCCEEEEEcCCC----------cEEEEEEC
Confidence 89999999983 2 12233 45544 688999999999999999997 99999986
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=151.85 Aligned_cols=184 Identities=11% Similarity=0.131 Sum_probs=143.1
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe--------CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS--------PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS--------dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
.++..|+.++.|++++|||+++.+.+.++....|..+..+ ||.+.+.. .. -.+.+|++++++++..+.
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~-~~---~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLY-PG---NQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEE-TT---TEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEE-cc---CceEEeecCCcceeEEee
Confidence 3578899999999999999999999988875566554444 33332222 11 145567888999887743
Q ss_pred eccccCCcceeeeeec--cee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEE
Q 015220 275 HLLHRNKKVDFIEQFN--EKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVW 346 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~--ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iW 346 (411)
++|..+|..+..++ ++. +....+..|++||+.+++...+. ...|...+.+++.+ ++++++ .|++|++|
T Consensus 122 --~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 122 --VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH--SAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp --CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE--CCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred --cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE--ecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 57888999999988 554 33668899999999999997642 22345556666665 788887 89999999
Q ss_pred ecC-Ccee-eeecc-ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 347 NFR-GELV-TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 347 n~~-Gel~-~s~e~-H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|++ |+.+ .+|+. |.. .++.+..+|||.+|+|++ |+ +|+|||+.+++++
T Consensus 198 d~~~~~~~~~~~~~~h~~-----~v~~l~fs~~g~~l~s~~-~~----------~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEA-----KIKEVKFADNGYWMVVEC-DQ----------TVVCFDLRKDVGT 248 (343)
T ss_dssp ESSCTTSCCEECCCCTTS-----CEEEEEECTTSSEEEEEE-SS----------BEEEEETTSSTTC
T ss_pred ECCCCCCCccEEeccCCC-----CEEEEEEeCCCCEEEEEe-CC----------eEEEEEcCCCCcc
Confidence 999 8887 89998 988 899999999999999999 55 8999999998763
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-16 Score=138.94 Aligned_cols=196 Identities=11% Similarity=0.043 Sum_probs=152.4
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEE--e-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKI--S-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkI--S-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
-+.|.. +|+.|+..+.|++++|||+.+.+.+....+. .|..+.. + +|.+|++..... .|+||++.+++.+.+
T Consensus 91 ~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 91 DVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDK---TLKFWDTRSSNPMMV 166 (368)
T ss_dssp EEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTS---EEEEECSSCSSCSEE
T ss_pred EEEECc-CCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCC---cEEEEECCCCcEEEE
Confidence 356765 8889999999999999999999988766554 8999998 6 788777765543 499999999999988
Q ss_pred eeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE-eeccccCCCceEEEEeec-----eeEEEE-ecCeEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYEN-----QLFLTF-RNRTVAV 345 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~s-----qlFlSf-sd~tI~i 345 (411)
+. . ...+..+...+..+++...+..+++||+.+..... .......++...+.+... ..++++ .|++|++
T Consensus 167 ~~---~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 167 LQ---L-PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp EE---C-SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred Ee---c-CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 44 2 34777888999999999999999999999865433 222333444555544433 226666 8999999
Q ss_pred EecC-C---ceeeeeccccccCC-------CCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 346 WNFR-G---ELVTSFEDHLLWHP-------DCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 346 Wn~~-G---el~~s~e~H~~~~~-------~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+++ + .++.++.+|..-.. .-.++.+.++|||++|++++.|. +|.|||+.+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg----------~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG----------RFSFWDKDARTKL 308 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS----------CEEEEETTTTEEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC----------eEEEEECCCCcEE
Confidence 9999 4 57788998876110 01488999999999999999986 9999999999885
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-15 Score=139.10 Aligned_cols=268 Identities=10% Similarity=0.056 Sum_probs=186.1
Q ss_pred ceehhhhccccceeeecccccEEEE--EeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICF--LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~--lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 183 (411)
.+++.-...|....||..+++.+|. +...+..-|+++=++...+.|++.| .|. .++.-... .++.
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s---~D~--~v~iw~~~-----~~~~--- 95 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS---FDA--TTCIWKKN-----QDDF--- 95 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE---TTS--CEEEEEEC-----CC-E---
T ss_pred CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE---CCC--cEEEEEcc-----CCCe---
Confidence 4555556778999999998987773 4567888899999999777776644 222 22222111 1000
Q ss_pred CcceeecccCCCCe---EEeeCCCCeEEEeecCCCeEEEEEeeCc---eEEEEeccC--ceeEEEEe-CCEEEEEEecCC
Q 015220 184 FALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSISDK--NVQEIKIS-PGIMLLIFTKAS 254 (411)
Q Consensus 184 ~~LF~~~~l~~Pgf---vEFDd~NGkiLt~~~~ds~ykVWdL~~Y---s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~ 254 (411)
..+. .--.|.+. +.|. ++|+.|++++.|++++|||+.+. +++..+..+ .|..+..+ +|.+|++.....
T Consensus 96 ~~~~--~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~ 172 (345)
T 3fm0_A 96 ECVT--TLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD 172 (345)
T ss_dssp EEEE--EECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred EEEE--EccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence 0000 00123332 4564 48999999999999999999875 456667654 79999999 788888776544
Q ss_pred CceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccce-------------EEEeeccc
Q 015220 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFE-------------LTEVSRTE 319 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e-------------~~~v~~T~ 319 (411)
-++||++.+++...... +-+|..+|..++.++++.++. +.+..|+|||+.... ..++. +.
T Consensus 173 ---~i~~w~~~~~~~~~~~~-~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~-~~ 247 (345)
T 3fm0_A 173 ---TVKLYREEEDDWVCCAT-LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC-TL 247 (345)
T ss_dssp ---CEEEEEEETTEEEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE-EE
T ss_pred ---cEEEEEecCCCEEEEEE-ecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE-Ee
Confidence 48999999997543222 668999999999998875444 578899999985421 11111 22
Q ss_pred c-CCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cc----e-----eeeeccccccCCCCccceEEEcCCC-CEEEEE
Q 015220 320 F-MTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GE----L-----VTSFEDHLLWHPDCNTNNIYITSDQ-DLIISY 383 (411)
Q Consensus 320 f-~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Ge----l-----~~s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~ 383 (411)
- .|...+..++.+ +.+++. .|++|++|+.+ +. + ...+.+|.. .++.|..+||+ .+|+||
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ-----DVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSS-----CEEEEEECSSSTTEEEEE
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccC-----cEeEeEEeCCCceEEEEc
Confidence 2 377888888866 567777 89999999987 32 1 123457777 89999999998 599999
Q ss_pred ecCCCCCccccCCceEEEeeecceee
Q 015220 384 CKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 384 ~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.|. +|++|++.++|-
T Consensus 323 s~Dg----------~v~~W~~~~~~~ 338 (345)
T 3fm0_A 323 SDDG----------EVAFWKYQRPEG 338 (345)
T ss_dssp ETTS----------CEEEEEECC---
T ss_pred CCCC----------cEEEEEecCCCC
Confidence 9997 999999999874
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-17 Score=153.79 Aligned_cols=186 Identities=8% Similarity=0.064 Sum_probs=144.6
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
-+.|. ++|+.|+.+..+ .++|||+.+.+.++......+..+.++ ++..+++...... -|+|||+.+|+++.++.
T Consensus 24 ~v~fs-~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~v~iWd~~~~~~~~~~~- 98 (355)
T 3vu4_A 24 DYEFN-QDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKE--VVHIWDDVKKQDVSRIK- 98 (355)
T ss_dssp EEEEC-TTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTT--EEEEEETTTTEEEEEEE-
T ss_pred EEEEC-CCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCcc--EEEEEECCCCcEEEEEE-
Confidence 46675 588888876655 589999999999988876677777777 4444444333322 89999999999999844
Q ss_pred ccccCCcceeeeeecceeEEeecCceeeEEEcccc-eEEEeeccccCCCceEEEEeeceeEEE-E-ecCeEEEEecC-Cc
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQLFLT-F-RNRTVAVWNFR-GE 351 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~sqlFlS-f-sd~tI~iWn~~-Ge 351 (411)
+..+|..+...++.+++.. +..++|||+.++ +... +.- .|....++..+.+.++ + .+++|++||++ |.
T Consensus 99 ---~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~---~~~-~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~ 170 (355)
T 3vu4_A 99 ---VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRIT---DDI-RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSG 170 (355)
T ss_dssp ---CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSS---CCE-EEEEEEEEETTEEEEEESSCTTCEEEEECCC--
T ss_pred ---CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeE---Eec-cCCceEEEEccEEEEeCCCcCcEEEEEECCCCC
Confidence 4579999999999888876 568999999998 5443 222 2666666666444444 4 89999999999 54
Q ss_pred ---------------e-eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCce-EEEeeecceeee
Q 015220 352 ---------------L-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGK-LFVSLLMFVTCK 410 (411)
Q Consensus 352 ---------------l-~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gt-I~i~~i~tGk~~ 410 (411)
+ +.++.+|.. .++.+.++|||.+|+|||.|. + |+|||+.+|+++
T Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~h~~-----~v~~~~~s~~g~~l~s~s~d~----------~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 171 SATTQDQGVQQKAILGKGVLIKAHTN-----PIKMVRLNRKSDMVATCSQDG----------TIIRVFKTEDGVLV 231 (355)
T ss_dssp ----------------CCEEECCCSS-----CEEEEEECTTSSEEEEEETTC----------SEEEEEETTTCCEE
T ss_pred ccccccccccccccCcccEEEEccCC-----ceEEEEECCCCCEEEEEeCCC----------CEEEEEECCCCcEE
Confidence 2 789999998 899999999999999999997 9 999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.8e-17 Score=150.05 Aligned_cols=186 Identities=13% Similarity=0.061 Sum_probs=155.0
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc---CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~---~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
+.|++ +. +++.+.|++++|||+.+.+.+..+.. ..|..+.++ +|.+|++..... .|+||++++|+.+.+
T Consensus 99 ~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~- 171 (401)
T 4aez_A 99 LDWSN--LN-VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG---LVDIYDVESQTKLRT- 171 (401)
T ss_dssp EEECT--TS-EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCEEEE-
T ss_pred EeecC--CC-EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC---eEEEEECcCCeEEEE-
Confidence 55554 33 45567899999999999998766653 389999999 888888876543 689999999999998
Q ss_pred eeccccCCcceeeeeecceeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEec
Q 015220 274 NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNF 348 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~ 348 (411)
+-+|..+|..+...+..++....+..|++||+.+ ++... +...|+..+..+..+ +.|+++ .|++|++||+
T Consensus 172 --~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 172 --MAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIG---TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246 (401)
T ss_dssp --ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE---EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred --ecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceee---EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccC
Confidence 5589999999999888889999999999999994 55554 667799999988876 677777 7899999999
Q ss_pred C-CceeeeeccccccCCCCccceEEEcCCC-CEEEEEe--cCCCCCccccCCceEEEeeecceeee
Q 015220 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYC--KADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 349 ~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~--~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+ ++++.++.+|.. .+..+..+||| .++++|+ .|. +|.+||+.+|+++
T Consensus 247 ~~~~~~~~~~~~~~-----~v~~~~~~p~~~~ll~~~~gs~d~----------~i~i~d~~~~~~~ 297 (401)
T 4aez_A 247 RSSIPKFTKTNHNA-----AVKAVAWCPWQSNLLATGGGTMDK----------QIHFWNAATGARV 297 (401)
T ss_dssp TCSSEEEEECCCSS-----CCCEEEECTTSTTEEEEECCTTTC----------EEEEEETTTCCEE
T ss_pred CCCCccEEecCCcc-----eEEEEEECCCCCCEEEEecCCCCC----------EEEEEECCCCCEE
Confidence 9 899999999988 89999999987 5666654 454 9999999999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-16 Score=158.35 Aligned_cols=243 Identities=10% Similarity=0.110 Sum_probs=180.5
Q ss_pred CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeE---EeeCCCCeEEE
Q 015220 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFV---EFDDVNGKVLT 209 (411)
Q Consensus 133 ~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgfv---EFDd~NGkiLt 209 (411)
..+...|.+|-++..+..++. +...|. .++.-.+ ..++...+ .-....-.|.+.| .|. ++|+.|+
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~--s~s~D~--~i~~W~~-----~~~~~~~~--~~~~~~~~h~~~v~~v~~s-~~g~~l~ 446 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIV--SASRDK--SIILWKL-----TKDDKAYG--VAQRRLTGHSHFVEDVVLS-SDGQFAL 446 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEE--EEETTS--EEEEEEC-----CCSTTCSC--EEEEEEECCSSCEEEEEEC-TTSSEEE
T ss_pred ccCCceeEEEEecCCCCCEEE--EEeCCC--cEEEEEc-----cCCCcccc--cccceecCCCCcEEEEEEC-CCCCEEE
Confidence 367788899999877655544 222332 3333322 11111011 1111222455554 453 5899999
Q ss_pred eecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceee
Q 015220 210 YSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI 286 (411)
Q Consensus 210 ~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FL 286 (411)
+++.|++++|||+.+.+.+.++.++ .|..+.+| +|..|+....- -.|+||++.++..........+|...|..+
T Consensus 447 sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD---RTIKLWNTLGECKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT---SCEEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred EEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCC---CEEEEEECCCCcceeeccCCCCCCCcEEEE
Confidence 9999999999999999999998866 89999999 78777776543 358999987665444333345788999999
Q ss_pred eeecce----eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeeeec
Q 015220 287 EQFNEK----LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFE 357 (411)
Q Consensus 287 E~~~ek----llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e 357 (411)
..+++. ++-.+.+..|+|||+.+++... ++.+|...+..+..+ ++++|+ .|++|++||++ |..+.+++
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~---~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS---TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEE---EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence 998875 5666789999999999999887 788899999999887 778888 78999999998 99988887
Q ss_pred cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 358 ~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|. .++.+..+||+.++++++ +. .|+|||+.+|+++
T Consensus 601 ~~~------~v~~~~~sp~~~~l~~~~-~~----------~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 601 ANS------VIHALCFSPNRYWLCAAT-EH----------GIKIWDLESKSIV 636 (694)
T ss_dssp CSS------CEEEEEECSSSSEEEEEE-TT----------EEEEEETTTTEEE
T ss_pred CCC------cEEEEEEcCCCcEEEEEc-CC----------CEEEEECCCCCCh
Confidence 653 588999999999988765 33 7999999999874
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=144.89 Aligned_cols=242 Identities=10% Similarity=0.062 Sum_probs=167.3
Q ss_pred EeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe---EEeeCC-CCe
Q 015220 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF---VEFDDV-NGK 206 (411)
Q Consensus 131 lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf---vEFDd~-NGk 206 (411)
+-..+...|.++=++....-|++.| .|. .++.--+ ..|+ ..+. ..--.|.+- +.|..+ +|.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs---~D~--~v~lwd~-----~~~~----~~~~-~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCS---SDR--SVKIFDV-----RNGG----QILI-ADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEE---TTT--EEEEEEE-----ETTE----EEEE-EEEECCSSCEEEEEECCGGGSS
T ss_pred ecccccCeEEEeeEcCCCCEEEEEe---CCC--eEEEEEe-----cCCC----cEEE-EEEcCCCccEEEEEeCCCCCCC
Confidence 3345677788888888766665543 232 2333222 1111 0000 111135554 457543 689
Q ss_pred EEEeecCCCeEEEEEeeCc--eEEEEeccC--ceeEEEEeC---CEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 207 VLTYSAQDSIYKVFDLKNY--TMLYSISDK--NVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Y--s~iysLs~~--~VqeIkISd---G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
.|++++.|++++|||+++. +.++++..+ .|..+..+| |.+|+...... .|+||++.++........+-+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~---~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG---AISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS---CEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC---CEEEEecCCCCCcceeeeeccc
Confidence 9999999999999999986 577777755 799999994 77787766543 4899999988543322336688
Q ss_pred CCcceeeeeecc-------------------eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-------e
Q 015220 280 NKKVDFIEQFNE-------------------KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-------Q 333 (411)
Q Consensus 280 ~K~I~FLE~~~e-------------------kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-------q 333 (411)
..+|..+...++ .+.....+..|+|||+.+++..+...++.+|..++..++.+ +
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 888988887765 23445578899999998764333234788999999999875 4
Q ss_pred eEEEE-ecCeEEEEecCC-c----eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 334 LFLTF-RNRTVAVWNFRG-E----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~G-e----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+++|. .|++|++|+++. . ....+.+|.. .+..+..+|||++|+|++.|. +|+||+..
T Consensus 230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-----~v~~v~~sp~g~~las~~~D~----------~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND-----VVWHVSWSITANILAVSGGDN----------KVTLWKES 292 (316)
T ss_dssp EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS-----CEEEEEECTTTCCEEEEESSS----------CEEEEEEC
T ss_pred eEEEEcCCCeEEEEEccCccccchhhhhhhcCCC-----cEEEEEEcCCCCEEEEEcCCC----------eEEEEEEC
Confidence 68888 799999999873 1 2345666755 789999999999999999997 99999985
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=151.41 Aligned_cols=207 Identities=14% Similarity=0.054 Sum_probs=156.2
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC----ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~----~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
-+.|...||..|++++.|++++|||+++..+......+ .+..+.++ +|.+|++..... .|+||++. |+.+.
T Consensus 169 ~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg---~i~~wd~~-~~~~~ 244 (435)
T 4e54_B 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG---NVILLNMD-GKELW 244 (435)
T ss_dssp EEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS---BEEEEESS-SCBCC
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC---cEeeeccC-cceeE
Confidence 36788889999999999999999999886654333333 46778888 888888875443 58999985 56666
Q ss_pred EeeeccccCCcceeeeeecce--eE-EeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEK--LL-VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVA 344 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ek--ll-IKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~ 344 (411)
+ +-+|..+|..+..++++ ++ ..+.+..|+|||+++++.........+|...+.+++.+ +.++|+ .|++|+
T Consensus 245 ~---~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~ 321 (435)
T 4e54_B 245 N---LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIR 321 (435)
T ss_dssp C---SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEE
T ss_pred E---EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEE
Confidence 6 67899999999998754 33 45678999999999987654333556799999999876 677777 899999
Q ss_pred EEecC-CceeeeeccccccCCC-CccceEEEcCCCCEEEEEecCCCCCc-cccCC-ceEEEeeecceeee
Q 015220 345 VWNFR-GELVTSFEDHLLWHPD-CNTNNIYITSDQDLIISYCKADSDDP-LAEGN-GKLFVSLLMFVTCK 410 (411)
Q Consensus 345 iWn~~-Gel~~s~e~H~~~~~~-c~~n~i~Is~Dqd~iiS~~~d~~~~~-~~~~~-gtI~i~~i~tGk~~ 410 (411)
|||++ |+...++..|...+.. ...-....+++++++++++.++.... +.... ++|++||+.||+++
T Consensus 322 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~ 391 (435)
T 4e54_B 322 VYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM 391 (435)
T ss_dssp EEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred EEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE
Confidence 99999 9999999888754322 22334567889998888876654322 22222 68999999999975
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-16 Score=139.46 Aligned_cols=247 Identities=12% Similarity=-0.003 Sum_probs=173.1
Q ss_pred CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCe-EEEee
Q 015220 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK-VLTYS 211 (411)
Q Consensus 133 ~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGk-iLt~~ 211 (411)
..+.+.|.++-++...+-|++.| .| ..++.-.+. .++... .+......-...--+.|.. +|+ .|++.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~---~d--~~v~iw~~~-----~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~l~~~ 75 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITS---WD--GSLTVYKFD-----IQAKNV-DLLQSLRYKHPLLCCNFID-NTDLQIYVG 75 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEE---TT--SEEEEEEEE-----TTTTEE-EEEEEEECSSCEEEEEEEE-SSSEEEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEc---CC--CeEEEEEeC-----CCCccc-cceeeeecCCceEEEEECC-CCCcEEEEE
Confidence 36677888888888666665533 22 233333332 111000 0010011111122456664 588 88889
Q ss_pred cCCCeEEEEEe-eCceEEEEecc--C--ceeEEEEeCCEEEEEEecCCCceeeEEEEecC---------CcEEeEeeecc
Q 015220 212 AQDSIYKVFDL-KNYTMLYSISD--K--NVQEIKISPGIMLLIFTKASGHVPLKILSIED---------GTVLKSFNHLL 277 (411)
Q Consensus 212 ~~ds~ykVWdL-~~Ys~iysLs~--~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~t---------G~~L~t~~~LL 277 (411)
..|+.++|||+ .+.+. ..+.. + .|..+.++++.+|++.... -.|++|++.+ ++++.+ +
T Consensus 76 ~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~----~ 147 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWD---GLIEVIDPRNYGDGVIAVKNLNSNN----T 147 (342)
T ss_dssp ETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETT---SEEEEECHHHHTTBCEEEEESCSSS----S
T ss_pred cCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCC---CeEEEEcccccccccccccCCeeeE----E
Confidence 99999999999 77765 55654 3 8999999976666666543 3589999999 888877 3
Q ss_pred ccCCcceeeeeecceeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC-C
Q 015220 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR-G 350 (411)
Q Consensus 278 ~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~-G 350 (411)
.|..+|..++..++.+++...+..|++||+.+ ++... ......|+..+..+..+ +.++++ .|++|++|+++ +
T Consensus 148 ~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred eeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccc-eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 47789999999999999999999999999998 54211 11333456666665543 567777 88999999998 5
Q ss_pred ------ceeeeeccccccC----CCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ------ELVTSFEDHLLWH----PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 ------el~~s~e~H~~~~----~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.++.+|..|.... ....++.+..+|||++|++++.|. +|.+||+.+|+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG----------IISCWNLQTRKKI 286 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS----------CEEEEETTTTEEE
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc----------eEEEEcCccHhHh
Confidence 7888999885411 123688999999999999999886 9999999999975
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-15 Score=141.50 Aligned_cols=197 Identities=10% Similarity=0.113 Sum_probs=148.2
Q ss_pred eEEeeCCCC-eEEEeecCCCeEEEEEeeCceEE---------------------------------------EEe-cc--
Q 015220 197 FVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTML---------------------------------------YSI-SD-- 233 (411)
Q Consensus 197 fvEFDd~NG-kiLt~~~~ds~ykVWdL~~Ys~i---------------------------------------ysL-s~-- 233 (411)
-+.|..... ..|+.++.|++++|||+.+.+.. ..+ .+
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 467765532 56777789999999999885542 122 22
Q ss_pred CceeEEEEe-CCEEEEEEecCCCceeeEEEEec-CCcEEeEee----eccccCCcceeeeeecce---eEEeecCceeeE
Q 015220 234 KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFN----HLLHRNKKVDFIEQFNEK---LLVKQENENLQI 304 (411)
Q Consensus 234 ~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~----~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI 304 (411)
..|..+.++ +|.+|+.. . ---|+||++. +++.+..+. .+-+|..+|..++.++++ ++....+..|+|
T Consensus 178 ~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA--D--DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp SCCCEEEECTTSSEEEEE--C--SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred cceEEEEEcCCCCEEEEe--C--CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 279999999 88888875 2 4578999999 455555321 255899999999999975 566678899999
Q ss_pred EEcccceE----EEeeccccCCCc------------eEEEEeec---eeEEEEecCeEEEEecC--CceeeeeccccccC
Q 015220 305 LDVRNFEL----TEVSRTEFMTPS------------AFIFLYEN---QLFLTFRNRTVAVWNFR--GELVTSFEDHLLWH 363 (411)
Q Consensus 305 ~dL~t~e~----~~v~~T~f~hps------------AfifLy~s---qlFlSfsd~tI~iWn~~--Gel~~s~e~H~~~~ 363 (411)
||+++++. .. +.-.|.. .+..+..+ +++++.++++|++||++ |.++.++.+|....
T Consensus 254 wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 254 CDMRASALCDRHSK---LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EETTTCSSSCTTCE---EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EECcCCccccceee---EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccc
Confidence 99999886 33 3334443 77777776 67888877999999997 88999999997532
Q ss_pred C--------CCc--cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 364 P--------DCN--TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 364 ~--------~c~--~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
. +|. ...+..+|||+.|++|+.|. +|.|||+.+|+++
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg----------~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN----------FFRMFDRNTKRDI 377 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT----------EEEEEETTTCCEE
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCC----------EEEEEEcCCCcce
Confidence 2 221 22489999999999999987 9999999999874
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-17 Score=169.74 Aligned_cols=270 Identities=10% Similarity=0.116 Sum_probs=205.2
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC----
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP---- 180 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~---- 180 (411)
..++++-...|....||..+++.+..+. .+..-|.++-++.....+++.| .|. .++ .-+.+.......
T Consensus 852 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s---~dg--~v~--vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 852 DHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTAS---DDQ--TIR--VWETKKVCKNSAIVLK 923 (1249)
T ss_dssp TTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEE---TTS--CEE--EEEHHHHHSCCSSSEE
T ss_pred CCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEe---CCC--eEE--EEEccccceeeeeccc
Confidence 4567777788899999999999888776 4556788999998887777654 222 222 222221110000
Q ss_pred ----------------------------CCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec
Q 015220 181 ----------------------------DAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (411)
Q Consensus 181 ----------------------------~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs 232 (411)
..+...+.. -...--+.| .++|+.++....++.+++||+.+.+.+.++.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~-sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP--EAQVSCCCL-SPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC--CSCEEEEEE-CTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc--cCcEEEEEE-cCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 000000000 001112334 3578889999999999999999999999988
Q ss_pred cC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee-EEeecCceeeEEEcc
Q 015220 233 DK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVR 308 (411)
Q Consensus 233 ~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~ 308 (411)
.+ .|..+.+| ||.+|++..... -|++|++.+|+.+. +.+|..+|..+..+++.. +....+..+++||+.
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg---~i~vwd~~~~~~~~----~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDS---VIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSS---BEEEEETTTTEEEC----CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred cCCCceEEEEECCCCCEEEEEcCCC---EEEEEECCCCceEE----EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 65 89999999 888888765433 58999999999874 468899999999988776 566788999999999
Q ss_pred cceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEE
Q 015220 309 NFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 309 t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
+++... +.-+|...+..++.+ +.++++ .|++|++||+. |+++.++.+|.. .++.+..||||++|++|
T Consensus 1074 ~~~~~~---~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~-----~v~~~~~s~dg~~lat~ 1145 (1249)
T 3sfz_A 1074 TGRIER---DFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG-----CVRCSAFSLDGILLATG 1145 (1249)
T ss_dssp TTCCCE---EEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS-----CEEEEEECSSSSEEEEE
T ss_pred CCceeE---EEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCC-----cEEEEEECCCCCEEEEE
Confidence 999877 666788888777766 667777 89999999999 999999999988 89999999999999999
Q ss_pred ecCCCCCccccCCceEEEeeecceeee
Q 015220 384 CKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 384 ~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.|. +|.+||+.+|+++
T Consensus 1146 ~~dg----------~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1146 DDNG----------EIRIWNVSDGQLL 1162 (1249)
T ss_dssp ETTS----------CCCEEESSSSCCC
T ss_pred eCCC----------EEEEEECCCCceE
Confidence 9886 9999999999874
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=150.84 Aligned_cols=224 Identities=13% Similarity=0.096 Sum_probs=165.5
Q ss_pred ecCCCceeeeEeeehhhhhh-CCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce----EEEEec
Q 015220 158 ASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS 232 (411)
Q Consensus 158 ~sd~~s~L~cr~~~~~~i~~-gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys----~iysLs 232 (411)
.+-.|-++.+....-+..-+ .+. .. .--.+.|+.++.....+++..+.++.++|||+.... .+..+.
T Consensus 7 ~~sk~r~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~ 78 (402)
T 2aq5_A 7 RSSKFRHVFGQPAKADQCYEDVRV--SQ------TTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC 78 (402)
T ss_dssp -CCTTTTCEEEECCGGGSEESCCB--CC------CCCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC
T ss_pred CCCCCccccCcCCChhhcEeccee--ec------CccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe
Confidence 44456677777665442211 111 00 111245677766666666677889999999996643 334454
Q ss_pred cC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCC-------cEEeEeeeccccCCcceeeeeecce---eEEeec
Q 015220 233 DK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDG-------TVLKSFNHLLHRNKKVDFIEQFNEK---LLVKQE 298 (411)
Q Consensus 233 ~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG-------~~L~t~~~LL~h~K~I~FLE~~~ek---llIKQe 298 (411)
++ .|..+.++ ++.+|++.... --|+||++.++ +.+.+ +-+|..+|..++.+++. ++....
T Consensus 79 ~h~~~V~~~~~~p~~~~~l~s~s~d---g~v~vw~~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 79 GHTAPVLDIAWCPHNDNVIASGSED---CTVMVWEIPDGGLVLPLREPVIT---LEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETT---SEEEEEECCTTCCSSCBCSCSEE---EECCSSCEEEEEECSSBTTEEEEEET
T ss_pred cCCCCEEEEEeCCCCCCEEEEEeCC---CeEEEEEccCCCCccccCCceEE---ecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 44 89999999 57788887644 34999999999 55666 66899999999999985 345567
Q ss_pred CceeeEEEcccceEEEeeccc--cCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeeee-ccccccCCCCccce
Q 015220 299 NENLQILDVRNFELTEVSRTE--FMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNN 370 (411)
Q Consensus 299 ~~~LkI~dL~t~e~~~v~~T~--f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~-e~H~~~~~~c~~n~ 370 (411)
+..|+|||+.+++... +. ..|+..+.++..+ +.+++. .|++|++||++ |+.+.++ .+|.. ..+..
T Consensus 153 dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~ 225 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVL---TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG----TRPVH 225 (402)
T ss_dssp TSCEEEEETTTTEEEE---EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS----SSCCE
T ss_pred CCEEEEEECCCCCccE---EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC----CcceE
Confidence 8999999999999887 55 6799999998876 667777 79999999999 9999998 78876 24788
Q ss_pred EEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 371 IYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 371 i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+..+|||.++++|+.. ...|+|.+||+.+++.
T Consensus 226 ~~~~~~~~~l~~g~~~-------~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 226 AVFVSEGKILTTGFSR-------MSERQVALWDTKHLEE 257 (402)
T ss_dssp EEECSTTEEEEEEECT-------TCCEEEEEEETTBCSS
T ss_pred EEEcCCCcEEEEeccC-------CCCceEEEEcCccccC
Confidence 9999999999999421 1235999999999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-16 Score=145.03 Aligned_cols=199 Identities=10% Similarity=0.082 Sum_probs=150.5
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce-----------EEEEeccCc--------------eeEEEEe-CC--EEEE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----------MLYSISDKN--------------VQEIKIS-PG--IMLL 248 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-----------~iysLs~~~--------------VqeIkIS-dG--~~La 248 (411)
-+.|+. +|..|+.++.|+.++|||+.+.+ ++..+.++. |..++.+ ++ ..|+
T Consensus 33 ~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 33 TVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp EEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 357774 89999999999999999999766 577887766 9999999 44 4566
Q ss_pred EEecCCCceeeEEEEecCCcEEeE-------------------------------------eeeccccCCcceeeeeecc
Q 015220 249 IFTKASGHVPLKILSIEDGTVLKS-------------------------------------FNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 249 i~q~t~~~ipiKIl~I~tG~~L~t-------------------------------------~~~LL~h~K~I~FLE~~~e 291 (411)
+... --.|+||++.+++.... ..++.+|..+|..+..+++
T Consensus 112 s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 112 LSTN---DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEC---SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred EeCC---CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 6543 23589999998776321 0224589999999999987
Q ss_pred ee-EEeecCceeeEEEccc-ceEEEe----eccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC-Cce----eee
Q 015220 292 KL-LVKQENENLQILDVRN-FELTEV----SRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR-GEL----VTS 355 (411)
Q Consensus 292 kl-lIKQe~~~LkI~dL~t-~e~~~v----~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~-Gel----~~s 355 (411)
+. ++-..+..|+|||+.+ ++...+ +.+...|...+..+..+ ++++++ .|++|++||++ |++ +.+
T Consensus 189 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 268 (447)
T 3dw8_B 189 YETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL 268 (447)
T ss_dssp SSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred CCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence 65 3334788999999994 444442 22566789999998876 578888 89999999999 887 789
Q ss_pred eccccccCCC-------CccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc-eeee
Q 015220 356 FEDHLLWHPD-------CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF-VTCK 410 (411)
Q Consensus 356 ~e~H~~~~~~-------c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t-Gk~~ 410 (411)
|++|...... +.+..+..+|||++|++++. . +|+|||+.+ |+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~----------~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L----------SVKVWDLNMENRPV 320 (447)
T ss_dssp ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S----------EEEEEETTCCSSCS
T ss_pred eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C----------eEEEEeCCCCcccc
Confidence 9988742111 27899999999999999987 6 999999998 7754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-16 Score=138.05 Aligned_cols=183 Identities=11% Similarity=0.101 Sum_probs=148.7
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCC---cEEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG---TVLK 271 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG---~~L~ 271 (411)
+.| ++|..|+..+.|++++|||+.+.+.+..+.. ..|..+.++ +|.+|++..... .+++|++.+. +.+.
T Consensus 24 ~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 24 VVA--VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT---MINGVPLFATSGEDPLY 98 (313)
T ss_dssp EEE--EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS---CEEEEETTCCTTSCC-C
T ss_pred EEe--cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC---eEEEEEeeecCCCCccc
Confidence 456 6788899999999999999999998877764 489999999 888888876554 3677777665 5555
Q ss_pred EeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEee----ceeEEEE-ecCeEEEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE----NQLFLTF-RNRTVAVW 346 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~----sqlFlSf-sd~tI~iW 346 (411)
+ +-+|..+|..+...++.++....+..|++|| +++... +...|...+..+.. .+.+++. .|++|++|
T Consensus 99 ~---~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 99 T---LIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVY---NLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp E---ECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEE---EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred c---hhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEE---ecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 5 6789999999999888889999999999999 666655 45556776666553 3667777 88999999
Q ss_pred ecCCceeeeecc-ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 347 NFRGELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 347 n~~Gel~~s~e~-H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
| .+..+..+.. |.. .+..+..+||+. +++++.|. +|.+||+.+|+++
T Consensus 171 d-~~~~~~~~~~~~~~-----~i~~~~~~~~~~-~~~~~~dg----------~i~i~d~~~~~~~ 218 (313)
T 3odt_A 171 Q-NDKVIKTFSGIHND-----VVRHLAVVDDGH-FISCSNDG----------LIKLVDMHTGDVL 218 (313)
T ss_dssp E-TTEEEEEECSSCSS-----CEEEEEEEETTE-EEEEETTS----------EEEEEETTTCCEE
T ss_pred e-cCceEEEEeccCcc-----cEEEEEEcCCCe-EEEccCCC----------eEEEEECCchhhh
Confidence 9 6678888887 766 899999999999 88998886 9999999999875
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-15 Score=135.74 Aligned_cols=240 Identities=12% Similarity=0.078 Sum_probs=168.9
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCC---eEEee-CCCCeEEE
Q 015220 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFD-DVNGKVLT 209 (411)
Q Consensus 134 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fvEFD-d~NGkiLt 209 (411)
.+...|.++-++...+.|++.+ .|. .++...+.-.. +.++ ...-.|.+ -+.|. +.+|..|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~---~dg--~i~iw~~~~~~--------~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCS---SDK--TIKIFEVEGET--------HKLI--DTLTGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEE---TTS--CEEEEEEETTE--------EEEE--EEECCCSSCEEEEEECCGGGCSEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEE---CCC--cEEEEecCCCc--------ceee--eEecCCCCcEEEEEeCCCCCCCEEE
Confidence 3556688888888777665533 222 23333321000 0000 00112333 34564 33589999
Q ss_pred eecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-C--CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 210 YSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-P--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 210 ~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-d--G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
....|++++|||+.+.+ .+..+..+ .|..+.++ + |.+|++..... .|+||++.+++...... +.+|..+
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~-~~~~~~~ 149 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPII-IDAHAIG 149 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCTTSCCCEEE-EECCTTC
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC---cEEEEecCCCCceeeEE-ecCCCCc
Confidence 99999999999999987 77777644 89999999 4 67777765433 68999999996655443 5688999
Q ss_pred ceeeeeec---------------ceeEEeecCceeeEEEcccceEE-EeeccccCCCceEEEEeec------eeEEEE-e
Q 015220 283 VDFIEQFN---------------EKLLVKQENENLQILDVRNFELT-EVSRTEFMTPSAFIFLYEN------QLFLTF-R 339 (411)
Q Consensus 283 I~FLE~~~---------------ekllIKQe~~~LkI~dL~t~e~~-~v~~T~f~hpsAfifLy~s------qlFlSf-s 339 (411)
|..+..++ ..++....+..|++||+.+++.. ....+...|...+..+..+ ++++++ .
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 99999987 23455668899999999986533 2334667788888888864 567777 7
Q ss_pred cCeEEEEecC-Cc-----eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 340 NRTVAVWNFR-GE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 340 d~tI~iWn~~-Ge-----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|++|++||++ |+ .+.....|.. .+..+..+|||++|++++.|. +|.|||+.++
T Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~dg----------~i~iw~~~~~ 288 (379)
T 3jrp_A 230 DRTCIIWTQDNEQGPWKKTLLKEEKFPD-----VLWRASWSLSGNVLALSGGDN----------KVTLWKENLE 288 (379)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSS-----CEEEEEECSSSCCEEEEESSS----------SEEEEEEEET
T ss_pred CCEEEEEeCCCCCccceeeeeccccCCC-----cEEEEEEcCCCCEEEEecCCC----------cEEEEeCCCC
Confidence 9999999999 53 2223333554 789999999999999999986 9999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=144.37 Aligned_cols=188 Identities=13% Similarity=0.134 Sum_probs=149.2
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEe---------------ccCceeEEEEe--CCEEEEEEecCCCceeeE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---------------SDKNVQEIKIS--PGIMLLIFTKASGHVPLK 260 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysL---------------s~~~VqeIkIS--dG~~Lai~q~t~~~ipiK 260 (411)
+.|...+|+.|+.++.|++++|||+.+.+.+..+ ....|..+..+ ++.+|++.... -.|+
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---~~i~ 125 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD---KTLK 125 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT---SEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC---CeEE
Confidence 5677669999999999999999999997755433 23489999998 45566665432 3699
Q ss_pred EEEecCCcEEeEeeeccccCCcceeeeeecc-----eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---
Q 015220 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE-----KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--- 332 (411)
Q Consensus 261 Il~I~tG~~L~t~~~LL~h~K~I~FLE~~~e-----kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--- 332 (411)
||++.+++.+..+. +..++..+...+. .++....+..|++||+.+++... +...|...+.++..+
T Consensus 126 iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~---~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 126 VWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH---ILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp EEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE---EECCCCSCEEEEEECSSC
T ss_pred EeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee---eecCCCCcEEEEEECCCC
Confidence 99999999998854 4556666666553 45777788999999999998876 666789999888876
Q ss_pred e-eEEEE-ecCeEEEEecC-Cc-eeeee---------------ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccc
Q 015220 333 Q-LFLTF-RNRTVAVWNFR-GE-LVTSF---------------EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (411)
Q Consensus 333 q-lFlSf-sd~tI~iWn~~-Ge-l~~s~---------------e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~ 393 (411)
+ +|+++ .|++|++||++ ++ .+..+ .+|.. .+..+..+|||+.|++++.|.
T Consensus 199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg------ 267 (408)
T 4a11_B 199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG-----KVNGLCFTSDGLHLLTVGTDN------ 267 (408)
T ss_dssp TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS-----CEEEEEECTTSSEEEEEETTS------
T ss_pred CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC-----ceeEEEEcCCCCEEEEecCCC------
Confidence 3 68788 88999999998 54 55566 45555 789999999999999999987
Q ss_pred cCCceEEEeeecceeee
Q 015220 394 EGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 394 ~~~gtI~i~~i~tGk~~ 410 (411)
+|.+||+.+|+..
T Consensus 268 ----~i~vwd~~~~~~~ 280 (408)
T 4a11_B 268 ----RMRLWNSSNGENT 280 (408)
T ss_dssp ----CEEEEETTTCCBC
T ss_pred ----eEEEEECCCCccc
Confidence 9999999998753
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=159.25 Aligned_cols=181 Identities=13% Similarity=0.068 Sum_probs=116.8
Q ss_pred CCeEEEeec--CCCeEEEEEe-eCceEEEEeccC--ceeEEEEe----CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 204 NGKVLTYSA--QDSIYKVFDL-KNYTMLYSISDK--NVQEIKIS----PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 204 NGkiLt~~~--~ds~ykVWdL-~~Ys~iysLs~~--~VqeIkIS----dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
+|+.+..+. +|+.+++|++ .+.+.+.++..+ +|..+++| ||-.|+... .--.|||||+.||++++++.
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS---~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT---IMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE---TTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec---CCCcEEEEECCCCcEEEEEc
Confidence 444444422 4555555555 224444443322 33333333 123333322 34579999999999999953
Q ss_pred eccccCC---cceeeeeecceeEE--------------eecCceeeEEEcccceEEEeecc--ccCCCceEEEEee-cee
Q 015220 275 HLLHRNK---KVDFIEQFNEKLLV--------------KQENENLQILDVRNFELTEVSRT--EFMTPSAFIFLYE-NQL 334 (411)
Q Consensus 275 ~LL~h~K---~I~FLE~~~ekllI--------------KQe~~~LkI~dL~t~e~~~v~~T--~f~hpsAfifLy~-sql 334 (411)
+|.. -+..++.++++.++ -+.+..|++||..+++.+.+..- .-+|...|+.... ..+
T Consensus 221 ---g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~ 297 (356)
T 2w18_A 221 ---IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHC 297 (356)
T ss_dssp ---CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTE
T ss_pred ---CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCE
Confidence 4433 34334678888766 24678999999999998763210 1244444443322 256
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
.+++ .|+||+|||+. |+++.+|++|... .+..++.||||++|+|||.|+ ||+|||+
T Consensus 298 lASgS~DgTIkIWDl~tGk~l~tL~gH~~~----vvs~vafSPDG~~LaSGS~D~----------TIklWd~ 355 (356)
T 2w18_A 298 AAAILTSGTIAIWDLLLGQCTALLPPVSDQ----HWSFVKWSGTDSHLLAGQKDG----------NIFVYHY 355 (356)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCC--C----CCCEEEECSSSSEEEEECTTS----------CEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEecCCCCC----eEEEEEECCCCCEEEEEECCC----------cEEEecC
Confidence 7888 69999999999 9999999999871 234589999999999999998 9999996
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=154.52 Aligned_cols=190 Identities=10% Similarity=0.063 Sum_probs=146.5
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceE--EEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~--iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
+.|...++.+|+.++.|++++|||+.+.+. +.++.++ .|..++++ ||.+|+....-. -|+|||++++....
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~---~v~iwd~~~~~~~~ 201 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG---TTRLQDFKGNILRV 201 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS---CEEEEETTSCEEEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC---EEEEeeccCCceeE
Confidence 677777889999999999999999988764 4444444 89999998 577777765433 38999998775543
Q ss_pred EeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVA 344 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~ 344 (411)
. ...-.+...+..+..++++.+|. ..+..|++||+...+.. ++.+|...+..+..+ .+|+++ .|++|+
T Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~----~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 202 F-ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW----NLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp E-ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC----CSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred E-eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE----EEecccceEEeeeecCCCceEEEEecCcceee
Confidence 3 22223344567788888776555 46779999999765543 677899999999875 578788 789999
Q ss_pred EEecC-Cceee---eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 345 VWNFR-GELVT---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 345 iWn~~-Gel~~---s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|||++ ++... ...+|.. .++.++.+|||..|+|+|.|. +|+|||+.+|++.
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~-----~v~~~~~spdg~~l~s~~~D~----------~i~iwd~~~~~~~ 331 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRH-----PVNAACFSPDGARLLTTDQKS----------EIRVYSASQWDCP 331 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSS-----CEEECCBCTTSSEEEEEESSS----------CEEEEESSSSSSE
T ss_pred EEecccccccceEEEeeeccc-----cccceeECCCCCeeEEEcCCC----------EEEEEECCCCccc
Confidence 99998 65443 4467877 789999999999999999997 9999999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-16 Score=135.85 Aligned_cols=266 Identities=9% Similarity=0.018 Sum_probs=185.2
Q ss_pred ccceEEEeecc-----ceehhhhccccceeeeccc-ccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeE
Q 015220 95 RSKIIEIVAAR-----DIVFALAQSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (411)
Q Consensus 95 RS~V~EIv~a~-----dii~~L~~sG~c~af~~~t-~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr 168 (411)
...|.-+-+.. .++++-...|....||..+ ++.+...-..+..-|.++-++...+-|++.| .|. .++.-
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~dg--~v~iw 113 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS---CDK--TAKMW 113 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE---TTS--EEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc---CCC--cEEEE
Confidence 45566666654 4677778889999999988 6666344445677789999998776666543 232 23332
Q ss_pred eeehhhhhhCCCCCCCcceeecccCCCC---eEEee-CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeC
Q 015220 169 STRIEYIRRGKPDAGFALFESESLKWPG---FVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISP 243 (411)
Q Consensus 169 ~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fvEFD-d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISd 243 (411)
++..++ .+. ...|++ -+.|. .++|..|+++..|++++|||+++.+++.++..+ .+..+..++
T Consensus 114 -----d~~~~~-----~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 114 -----DLSSNQ-----AIQ---IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp -----ETTTTE-----EEE---EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred -----EcCCCC-----cee---eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 222222 111 112333 34553 788999999999999999999999999888855 677777775
Q ss_pred CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeee------cceeEEeecCceeeEEEcccceEEEeec
Q 015220 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF------NEKLLVKQENENLQILDVRNFELTEVSR 317 (411)
Q Consensus 244 G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~------~ekllIKQe~~~LkI~dL~t~e~~~v~~ 317 (411)
..+++.... -.+.+|++.++....... ...+..++..+..+ ++.++....+..++|||+.+........
T Consensus 181 ~~~~~~~~~----~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 181 PMAVVATAE----RGLIVYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp TEEEEEEGG----GCEEEEECSSSCEEEEEC-CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred CeeEEEeCC----CcEEEEEeccccchhhhc-cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 554443332 248999999876655422 12233444445443 2338899999999999999874311111
Q ss_pred cccCCCc------------eEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEE
Q 015220 318 TEFMTPS------------AFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (411)
Q Consensus 318 T~f~hps------------AfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i 380 (411)
+.-.|.. ++..++.+ ++++++ .|++|++||++ |+++.++.+|.. .++.+..+|||++|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l 330 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-----PISACCFNHNGNIF 330 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-----CEEEEEECTTSSCE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-----CceEEEECCCCCeE
Confidence 3444544 67777766 678888 89999999999 999999999988 89999999999999
Q ss_pred EEEecCCC
Q 015220 381 ISYCKADS 388 (411)
Q Consensus 381 iS~~~d~~ 388 (411)
++++.|+.
T Consensus 331 ~~~s~d~~ 338 (368)
T 3mmy_A 331 AYASSYDW 338 (368)
T ss_dssp EEEECCCS
T ss_pred EEEecccc
Confidence 99999863
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-16 Score=146.54 Aligned_cols=190 Identities=11% Similarity=0.137 Sum_probs=146.5
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCc-------eEEEEeccC--ceeEEEEe-CC-EEEEEEecCCCceeeEEEEec
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-------TMLYSISDK--NVQEIKIS-PG-IMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y-------s~iysLs~~--~VqeIkIS-dG-~~Lai~q~t~~~ipiKIl~I~ 265 (411)
-+.|...+|..|+.++.|++++|||+.+. +++.++..+ .|..+..+ +| .+|++..... -|+||++.
T Consensus 86 ~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~ 162 (402)
T 2aq5_A 86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN---VILVWDVG 162 (402)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS---CEEEEETT
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC---EEEEEECC
Confidence 35677668999999999999999999998 667777754 89999999 55 5677665433 48999999
Q ss_pred CCcEEeEeeeccccCCcceeeeeecce--eEEeecCceeeEEEcccceEEEeeccc-cCCC----ceEEEEeeceeEEEE
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTEVSRTE-FMTP----SAFIFLYENQLFLTF 338 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~-f~hp----sAfifLy~sqlFlSf 338 (411)
+|+.+.++. ..+|..+|..+..++++ ++....+..|+|||+.+++... +. ..|. ....|....++++++
T Consensus 163 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g 238 (402)
T 2aq5_A 163 TGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA---EKDRPHEGTRPVHAVFVSEGKILTTG 238 (402)
T ss_dssp TTEEEEEEC-TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred CCCccEEEe-cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee---eeccCCCCCcceEEEEcCCCcEEEEe
Confidence 999999832 15789999999998765 4555678999999999999876 33 3444 334444445778887
Q ss_pred ----ecCeEEEEecC-Cce-eeeec-cccccCCCCccceEEEcCCCCEEE-EEecCCCCCccccCCceEEEeeeccee
Q 015220 339 ----RNRTVAVWNFR-GEL-VTSFE-DHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 ----sd~tI~iWn~~-Gel-~~s~e-~H~~~~~~c~~n~i~Is~Dqd~ii-S~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.|++|.+||++ ++. +..+. +|.. .+..++.+|||+.|+ +|+.|. +|.+||+.+|+
T Consensus 239 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~g~~dg----------~i~i~d~~~~~ 301 (402)
T 2aq5_A 239 FSRMSERQVALWDTKHLEEPLSLQELDTSS-----GVLLPFFDPDTNIVYLCGKGDS----------SIRYFEITSEA 301 (402)
T ss_dssp ECTTCCEEEEEEETTBCSSCSEEEECCCCS-----SCEEEEEETTTTEEEEEETTCS----------CEEEEEECSST
T ss_pred ccCCCCceEEEEcCccccCCceEEeccCCC-----ceeEEEEcCCCCEEEEEEcCCC----------eEEEEEecCCC
Confidence 78999999999 553 44433 4444 688999999999996 555565 99999999987
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=168.82 Aligned_cols=194 Identities=15% Similarity=0.158 Sum_probs=158.3
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
+.|+ ++|+.|+.+..|++++|||..+.+.+..+.+. .|..+..++|.+|+..... --|+||++.+|++++++.
T Consensus 23 lafs-pdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D---~~v~lWd~~~~~~~~~~~-- 96 (902)
T 2oaj_A 23 AAFD-FTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAK---DTVYVLSLYSQKVLTTVF-- 96 (902)
T ss_dssp EEEE-TTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETT---CEEEEEETTTCSEEEEEE--
T ss_pred EEEC-CCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECc---CeEEEEECCCCcEEEEEc--
Confidence 4676 47899999999999999999999988888754 7999999988877766543 359999999999999853
Q ss_pred cccCCcceeeeeeccee--EEeecCceeeEEEcccceEEE--ee------ccccCCCceEEEEeec----eeEEEE-ecC
Q 015220 277 LHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTE--VS------RTEFMTPSAFIFLYEN----QLFLTF-RNR 341 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~--v~------~T~f~hpsAfifLy~s----qlFlSf-sd~ 341 (411)
|..+|..++.+++.- +...++..+++||+.+++... ++ .+.-+|+..+..++.+ .+++++ .|+
T Consensus 97 --~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 97 --VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp --CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred --CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 457899999988765 555688999999999998642 21 3456788888888865 467777 889
Q ss_pred eEEEEecC-Cceeeeecccccc-------------CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 342 TVAVWNFR-GELVTSFEDHLLW-------------HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~-------------~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+| +||++ ++++.+|..|..- +....++.+..+|||++|+|++.|. +|+|||+.+|
T Consensus 175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg----------~i~lWd~~~g 243 (902)
T 2oaj_A 175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN----------SLVFWDANSG 243 (902)
T ss_dssp EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC----------CEEEEETTTC
T ss_pred cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC----------eEEEEECCCC
Confidence 99 99999 8899999988210 0123689999999999999999997 9999999999
Q ss_pred eee
Q 015220 408 TCK 410 (411)
Q Consensus 408 k~~ 410 (411)
+++
T Consensus 244 ~~~ 246 (902)
T 2oaj_A 244 HMI 246 (902)
T ss_dssp CEE
T ss_pred cEE
Confidence 975
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-16 Score=153.35 Aligned_cols=184 Identities=11% Similarity=0.143 Sum_probs=149.6
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCC-cEEeEeeecccc
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHR 279 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG-~~L~t~~~LL~h 279 (411)
+|+.|+....|++++|||+.+.+.+.++..+ .|..+..+ +|..|++.... -.++||+++++ +.... +-+|
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~---~~~~ 139 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD---LTVKLWNWENNWALEQT---FEGH 139 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT---SEEEEEEGGGTSEEEEE---EECC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCC---CEEEEEECCCCceEEEE---EcCC
Confidence 5677888888999999999999999999855 79999999 88788776543 46899999998 55555 5589
Q ss_pred CCcceeeeeec-ce--eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEee-----ceeEEEE-ecCeEEEEecC-
Q 015220 280 NKKVDFIEQFN-EK--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-----NQLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 280 ~K~I~FLE~~~-ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~-----sqlFlSf-sd~tI~iWn~~- 349 (411)
+.+|..+..++ ++ ++....+..|++||+.+++......+. ++..+.++.. .+.++++ .|++|.+||++
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 99999999987 43 466678899999999988766532222 2244444433 3567777 89999999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+++.++.+|.. .+..+..+|||++|++++.|. +|.+||+.+|+++
T Consensus 218 ~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg----------~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 218 KSCVATLEGHMS-----NVSFAVFHPTLPIIISGSEDG----------TLKIWNSSTYKVE 263 (814)
T ss_dssp TEEEEEEECCSS-----CEEEEEECSSSSEEEEEETTS----------CEEEEETTTCSEE
T ss_pred CcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCC----------eEEEEECCCCcEE
Confidence 999999999988 899999999999999999886 9999999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-16 Score=155.71 Aligned_cols=189 Identities=12% Similarity=0.126 Sum_probs=158.5
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
+.|. ++|..|+....+++++|||+.+.+.+.+++.+ .|..+..| +|..|++.... -.|+||++.+|+.+.+
T Consensus 19 i~~s-p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~-- 92 (814)
T 3mkq_A 19 IDFH-PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD---FRIRVFNYNTGEKVVD-- 92 (814)
T ss_dssp EEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT---SEEEEEETTTCCEEEE--
T ss_pred EEEC-CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCcEEEE--
Confidence 4454 47888999999999999999999999998854 79999999 88888887653 4689999999999998
Q ss_pred eccccCCcceeeeeecce--eEEeecCceeeEEEcccc-eEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEE
Q 015220 275 HLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVW 346 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iW 346 (411)
+-+|..+|..+..++++ ++....+..|++||+.++ .... +..+|+..+.++..+ +.+++. .|++|.+|
T Consensus 93 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vw 168 (814)
T 3mkq_A 93 -FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ---TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (814)
T ss_dssp -EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE---EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred -EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE---EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 55799999999999887 455667889999999997 5544 566788888887754 567777 78999999
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcC--CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITS--DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~--Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|++ ++...++..|.. ..++.+..+| |+.+|++++.|. +|.+||+.+|+++
T Consensus 169 d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~~dg----------~i~~~d~~~~~~~ 221 (814)
T 3mkq_A 169 SLGQSTPNFTLTTGQE----RGVNYVDYYPLPDKPYMITASDDL----------TIKIWDYQTKSCV 221 (814)
T ss_dssp ETTCSSCSEEEECCCT----TCCCEEEECCSTTCCEEEEECTTS----------EEEEEETTTTEEE
T ss_pred ECCCCcceeEEecCCC----CCEEEEEEEECCCCCEEEEEeCCC----------EEEEEECCCCcEE
Confidence 998 888888877652 3788999999 999999999886 9999999999875
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-16 Score=148.74 Aligned_cols=192 Identities=13% Similarity=0.114 Sum_probs=151.1
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce---EEEEeccC---------------------------------------
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDK--------------------------------------- 234 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys---~iysLs~~--------------------------------------- 234 (411)
.+.|. ++|+.|+. +.++.++|||+.+.+ .+.+..++
T Consensus 9 ~v~~s-~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (450)
T 2vdu_B 9 NLLTS-RDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKR 86 (450)
T ss_dssp EEEEC-SSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC--------------------------------------
T ss_pred EEEec-CCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccc
Confidence 45564 56775554 467899999999998 77666532
Q ss_pred -----------------ceeEEEEe-CCEEE-EEEecCCCceeeEEEEec--CCcEEeEeeeccccCCcceeeeeeccee
Q 015220 235 -----------------NVQEIKIS-PGIML-LIFTKASGHVPLKILSIE--DGTVLKSFNHLLHRNKKVDFIEQFNEKL 293 (411)
Q Consensus 235 -----------------~VqeIkIS-dG~~L-ai~q~t~~~ipiKIl~I~--tG~~L~t~~~LL~h~K~I~FLE~~~ekl 293 (411)
.|..+.+| +|.+| ++.... -.|+||++. +|+.+..+.. ..+..+|..+..++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d---g~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD---KSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -------------CCCCCEEEEEECTTSSEEEEEEGGG---TEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEECTTSS
T ss_pred cCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC---CeEEEEECcCCCCceeeeeec-ccCCCCceEEEEcCCCC
Confidence 48899999 88876 555432 348999999 9999988552 25678899999998764
Q ss_pred --EEeecCceeeEEEcccceEEE-eeccccCCCceEEEEeec------eeEEEE-ecCeEEEEecC-Cceeee-eccccc
Q 015220 294 --LVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYEN------QLFLTF-RNRTVAVWNFR-GELVTS-FEDHLL 361 (411)
Q Consensus 294 --lIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~s------qlFlSf-sd~tI~iWn~~-Gel~~s-~e~H~~ 361 (411)
+....+..+.+||+.+++... ...+..+|...+.++..+ ++++++ .|++|++||++ |.++.+ +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 555677889999999987653 333666788888887754 367787 88999999999 888887 679988
Q ss_pred cCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 362 ~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.++.+.++ ||++|+|++.|. +|+|||+.+|+++
T Consensus 243 -----~v~~~~~s-d~~~l~s~~~d~----------~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 243 -----FVSSICCG-KDYLLLSAGGDD----------KIFAWDWKTGKNL 275 (450)
T ss_dssp -----CEEEEEEC-STTEEEEEESSS----------EEEEEETTTCCEE
T ss_pred -----ceEEEEEC-CCCEEEEEeCCC----------eEEEEECCCCcEe
Confidence 89999999 999999999887 9999999999975
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-16 Score=164.96 Aligned_cols=192 Identities=15% Similarity=0.154 Sum_probs=155.2
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
.|. ++|+.|++++.|++++|||+.+.+.+.++..+ .|..+.+| ||.+|++..... -|+||++.+|+.+.+
T Consensus 622 ~~s-~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~vwd~~~~~~~~~--- 694 (1249)
T 3sfz_A 622 CFS-QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK---KVKIWDSATGKLVHT--- 694 (1249)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCCEEEE---
T ss_pred EEC-CCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCC---eEEEEECCCCceEEE---
Confidence 565 58999999999999999999999999999965 89999999 888888876433 499999999999999
Q ss_pred ccccCCcceeeeeec--ceeE--EeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEe
Q 015220 276 LLHRNKKVDFIEQFN--EKLL--VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 276 LL~h~K~I~FLE~~~--ekll--IKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn 347 (411)
+-+|..+|..+..++ +..+ ..+.+..|++||+.+++... +..+|...+.++..+ +.++|+ .|++|++||
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence 458999999999988 4444 44678899999999999887 788899999988876 678888 889999999
Q ss_pred cC-Cceeeeecccc-------------------cc-------------------------------CCCCccceEEEcCC
Q 015220 348 FR-GELVTSFEDHL-------------------LW-------------------------------HPDCNTNNIYITSD 376 (411)
Q Consensus 348 ~~-Gel~~s~e~H~-------------------~~-------------------------------~~~c~~n~i~Is~D 376 (411)
++ |+...++.... .| .....+..+..+||
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~ 851 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS
T ss_pred CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC
Confidence 98 76665543211 01 11225667777888
Q ss_pred CCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 377 QDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 377 qd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|.++++++.|. +|.+||+.+|+++
T Consensus 852 ~~~l~~~~~dg----------~v~vwd~~~~~~~ 875 (1249)
T 3sfz_A 852 DHLAVIALSQY----------CVELWNIDSRLKV 875 (1249)
T ss_dssp TTEEEEECSSS----------CEEEEETTTTEEE
T ss_pred CCEEEEEeCCC----------eEEEEEcCCCcee
Confidence 88888887765 9999999999864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=144.75 Aligned_cols=193 Identities=12% Similarity=0.198 Sum_probs=153.3
Q ss_pred EEeeCCCCeEE-EeecCCCeEEEEEee--CceEEEEec----cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 198 VEFDDVNGKVL-TYSAQDSIYKVFDLK--NYTMLYSIS----DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 198 vEFDd~NGkiL-t~~~~ds~ykVWdL~--~Ys~iysLs----~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
+.|. ++|+.| +.+..|++++|||+. +.+++..+. ...|..+.++ +|.+|++... ..-+.+|++.+++.
T Consensus 108 ~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 108 LRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---FGDVYSIDINSIPE 183 (450)
T ss_dssp EEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---TSEEEEEETTSCCC
T ss_pred EEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC---CCcEEEEecCCccc
Confidence 5565 466665 778899999999999 888888875 2479999999 8888888754 33479999999987
Q ss_pred Ee-EeeeccccCCcceeeeeecc---e--eEEeecCceeeEEEcccceEEEeecc-ccCCCceEEEEeec--eeEEEE-e
Q 015220 270 LK-SFNHLLHRNKKVDFIEQFNE---K--LLVKQENENLQILDVRNFELTEVSRT-EFMTPSAFIFLYEN--QLFLTF-R 339 (411)
Q Consensus 270 L~-t~~~LL~h~K~I~FLE~~~e---k--llIKQe~~~LkI~dL~t~e~~~v~~T-~f~hpsAfifLy~s--qlFlSf-s 339 (411)
.. ....+.+|..+|..+..+++ + ++....+..|++||+.+++... + ..+|...+..+..+ ++++|+ .
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~h~~~v~~~~~sd~~~l~s~~~ 260 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD---KWLFGHKHFVSSICCGKDYLLLSAGG 260 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE---EECCCCSSCEEEEEECSTTEEEEEES
T ss_pred ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee---eeecCCCCceEEEEECCCCEEEEEeC
Confidence 75 22236789999999999998 4 5566788999999999998776 4 55788888887764 677787 8
Q ss_pred cCeEEEEecC-Cceeeeecccccc--------------------CCCCccceEEEcCCCCEEEEEe-cCCCCCccccCCc
Q 015220 340 NRTVAVWNFR-GELVTSFEDHLLW--------------------HPDCNTNNIYITSDQDLIISYC-KADSDDPLAEGNG 397 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e~H~~~--------------------~~~c~~n~i~Is~Dqd~iiS~~-~d~~~~~~~~~~g 397 (411)
|++|++||++ |+++.++..|..- ..+-.+..|..+||+++|++++ .+.
T Consensus 261 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~---------- 330 (450)
T 2vdu_B 261 DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK---------- 330 (450)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCS----------
T ss_pred CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCC----------
Confidence 8999999999 9999988755311 1123577899999999999999 554
Q ss_pred eEEEeee--cce
Q 015220 398 KLFVSLL--MFV 407 (411)
Q Consensus 398 tI~i~~i--~tG 407 (411)
+|+|||+ .++
T Consensus 331 ~i~iw~~~~~~~ 342 (450)
T 2vdu_B 331 CIIILEMSEKQK 342 (450)
T ss_dssp EEEEEEECSSST
T ss_pred eEEEEEeccCCC
Confidence 9999999 665
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-16 Score=144.38 Aligned_cols=186 Identities=11% Similarity=0.133 Sum_probs=142.8
Q ss_pred CCeEEEeecCCCeEEEEEeeCceE----EEEec-------cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTM----LYSIS-------DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~----iysLs-------~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
++..|.....|+++|+|++.+.+. +.... ++.+..+++| ||.+|++...... --|+|||+++|+++.
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d-~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP-AIMRIIDPSDLTEKF 171 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS-CEEEEEETTTTEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC-CEEEEeECCCCcEEE
Confidence 334444556689999999987542 22222 1247789999 9999988764332 358999999999998
Q ss_pred EeeeccccCCcceeeeeecceeEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecC----e
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNR----T 342 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~----t 342 (411)
+ +.|..+|.-+..++++.++.. .+..+.+|+..+++... ..+...|...+..++.+ +.+++. .++ +
T Consensus 172 ~----~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 172 E----IETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA-RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp E----EECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE-EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred E----eCCCCceEEEEEccCCceEEeccceeEEEEEeccCccee-eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 8 356789999999999876654 56789999999988654 23667788888777765 777777 555 6
Q ss_pred EEEEecC-Cc----eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 343 VAVWNFR-GE----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 343 I~iWn~~-Ge----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.+|+.. +. ....+.+|.. .++.+++||||++|++||.|. +|+|||+.||+++
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~~-----~V~~~~~Spdg~~lasgs~D~----------~V~iwd~~~~~~~ 304 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRFK-----GITSMDVDMKGELAVLASNDN----------SIALVKLKDLSMS 304 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSCS-----CEEEEEECTTSCEEEEEETTS----------CEEEEETTTTEEE
T ss_pred EeecccccceecceeeeeecCCCC-----CeEeEEECCCCCceEEEcCCC----------EEEEEECCCCcEE
Confidence 8999987 33 2347888887 799999999999999999997 9999999999985
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=143.40 Aligned_cols=174 Identities=7% Similarity=0.003 Sum_probs=131.1
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCce---EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE--
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV-- 269 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys---~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~-- 269 (411)
+.|. ++|+.|++.+.|++++|||+.+.+ ++..+..+ .|..+.++ +|.+|++..... .|+||++.+++.
T Consensus 61 ~~~s-~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~ 136 (377)
T 3dwl_C 61 VDWA-PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR---VISVCYFEQENDWW 136 (377)
T ss_dssp EEEC-TTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS---CEEECCC-----CC
T ss_pred EEEe-CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC---eEEEEEECCcccce
Confidence 3454 468889999999999999999976 77777644 89999999 788777776543 489999999985
Q ss_pred -EeEeeeccc-cCCcceeeeeeccee--EEeecCceeeEEEccc------------------ceEEEeeccccCCCceEE
Q 015220 270 -LKSFNHLLH-RNKKVDFIEQFNEKL--LVKQENENLQILDVRN------------------FELTEVSRTEFMTPSAFI 327 (411)
Q Consensus 270 -L~t~~~LL~-h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t------------------~e~~~v~~T~f~hpsAfi 327 (411)
++. +-+ |..+|..+..++++. +....+..|++||+.+ ++... +. .|...+.
T Consensus 137 ~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~v~ 209 (377)
T 3dwl_C 137 VSKH---LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA---EY-PSGGWVH 209 (377)
T ss_dssp CCEE---ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE---CC-CCSSSEE
T ss_pred eeeE---eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh---cc-cCCceEE
Confidence 444 455 899999999998864 4456788999999963 44443 55 8999999
Q ss_pred EEeec---eeEEEE-ecCeEEEEecC-Cce----eeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 328 FLYEN---QLFLTF-RNRTVAVWNFR-GEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 328 fLy~s---qlFlSf-sd~tI~iWn~~-Gel----~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.+..+ ++++++ .|++|++||++ |+. +.++.+|.. .+..+..+|||++|++|+.+.
T Consensus 210 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~ 273 (377)
T 3dwl_C 210 AVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL-----PLRSLLWANESAIVAAGYNYS 273 (377)
T ss_dssp EEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS-----CEEEEEEEETTEEEEEESSSS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC-----ceEEEEEcCCCCEEEEEcCCc
Confidence 98876 677777 78999999999 777 889999988 799999999999999998765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-14 Score=132.29 Aligned_cols=262 Identities=11% Similarity=0.091 Sum_probs=183.1
Q ss_pred ceehhhhccccceeeecccccEEEEEeC----CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLNV----TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN~----s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~ 181 (411)
.++++-...|....||..+++.+..+.. .+...|.++-++..+.-+++ . +.+ ..++. .+ +..++
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s--~--~~d-~~v~~--~d---~~~~~-- 202 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS--Q--MQA-NAVHV--FD---LKTLA-- 202 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE--E--GGG-TEEEE--EE---TTTCC--
T ss_pred eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE--E--CCC-CEEEE--EE---CCCce--
Confidence 4555555667788999999987765443 55668888888665443322 2 122 22222 22 22222
Q ss_pred CCCcceee-cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCc--
Q 015220 182 AGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGH-- 256 (411)
Q Consensus 182 ~~~~LF~~-~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~-- 256 (411)
++..- ..-..|..+.|+..+..+++.+..++++++||+++.+.+..+... .+..+.++ +|..|++.....+.
T Consensus 203 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 203 ---YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp ---EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred ---EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc
Confidence 12111 223457788998766667788878999999999999999988855 79999999 78677766654432
Q ss_pred ---eeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eEEe-ecCceeeEEEcccceEEEeeccccCCCceEEEEe
Q 015220 257 ---VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLY 330 (411)
Q Consensus 257 ---ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy 330 (411)
-.|++|++.+|+++..+ .+...+..+...+++ +++. ..+..+++||+.+++....- .+......++
T Consensus 280 ~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~----~~~~~~~~~~ 351 (433)
T 3bws_A 280 SGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI----PVFDKPNTIA 351 (433)
T ss_dssp SCCEEEEEEETTTTEEEEEE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE----ECSSSEEEEE
T ss_pred cCCCeEEEEECCCCcEEeec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe----cCCCCCCeEE
Confidence 36999999999988874 344567778888775 5555 68899999999999887622 2445555666
Q ss_pred ec---e-eEEEEe---------------cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCC
Q 015220 331 EN---Q-LFLTFR---------------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD 390 (411)
Q Consensus 331 ~s---q-lFlSfs---------------d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~ 390 (411)
.+ + ++++.. |++|.+||+. |+++..+..+. .+..+.++|||+.|++++.++
T Consensus 352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~d--- 422 (433)
T 3bws_A 352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN------QPTGLDVSPDNRYLVISDFLD--- 422 (433)
T ss_dssp ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS------SEEEEEECTTSCEEEEEETTT---
T ss_pred EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC------CCceEEEcCCCCEEEEEECCC---
Confidence 54 3 444444 4699999998 99999888743 468899999999999887532
Q ss_pred ccccCCceEEEeeec
Q 015220 391 PLAEGNGKLFVSLLM 405 (411)
Q Consensus 391 ~~~~~~gtI~i~~i~ 405 (411)
|+|.+||+.
T Consensus 423 ------~~i~v~~~~ 431 (433)
T 3bws_A 423 ------HQIRVYRRD 431 (433)
T ss_dssp ------TEEEEEEET
T ss_pred ------CeEEEEEec
Confidence 499999986
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-15 Score=136.11 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=134.4
Q ss_pred EEeecCCCeEEEEEee---------CceEEEEec-c--CceeEEEEeC---CEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 208 LTYSAQDSIYKVFDLK---------NYTMLYSIS-D--KNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 208 Lt~~~~ds~ykVWdL~---------~Ys~iysLs-~--~~VqeIkISd---G~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
+++.+.|++++||+.. +.+.+..+. . ..|..+.+++ |.+++..... -.|+||++++|+.+..
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~ 164 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNR---GTIGFQSYEDDSQYIV 164 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETT---CCEEEEESSSSCEEEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCC---CcEEEEECCCCcEEEE
Confidence 7788889999999666 444454444 1 2588888875 6666665533 3489999999999765
Q ss_pred eeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEE-EeeccccC-CCceEEEEeec---eeEEEEecCeEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELT-EVSRTEFM-TPSAFIFLYEN---QLFLTFRNRTVAV 345 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~-~v~~T~f~-hpsAfifLy~s---qlFlSfsd~tI~i 345 (411)
+ ..++..+|..+..++++.+++. .+..|+|||+++++.. . +.-. |...+..+..+ +.+++.++++|++
T Consensus 165 ~--~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~---~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~i 239 (343)
T 3lrv_A 165 H--SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS---RFPVDEEAKIKEVKFADNGYWMVVECDQTVVC 239 (343)
T ss_dssp E--CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE---ECCCCTTSCEEEEEECTTSSEEEEEESSBEEE
T ss_pred E--ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc---EEeccCCCCEEEEEEeCCCCEEEEEeCCeEEE
Confidence 2 2356668999999999887775 7899999999999876 3 4444 88999999876 6788888889999
Q ss_pred EecC-Cceeeeecc---ccccCCCCcc--ceEEEcCCCCEEEEEec-CCCCCccccCCceEEEeeecce
Q 015220 346 WNFR-GELVTSFED---HLLWHPDCNT--NNIYITSDQDLIISYCK-ADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 346 Wn~~-Gel~~s~e~---H~~~~~~c~~--n~i~Is~Dqd~iiS~~~-d~~~~~~~~~~gtI~i~~i~tG 407 (411)
||++ ++.+.+++. |.. .+ ..+..+|||++|++++. |. +|+||++.++
T Consensus 240 wd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~s~~d~----------~i~v~~~~~~ 293 (343)
T 3lrv_A 240 FDLRKDVGTLAYPTYTIPEF-----KTGTVTYDIDDSGKNMIAYSNESN----------SLTIYKFDKK 293 (343)
T ss_dssp EETTSSTTCBSSCCCBC----------CCEEEEECTTSSEEEEEETTTT----------EEEEEEECTT
T ss_pred EEcCCCCcceeecccccccc-----cccceEEEECCCCCEEEEecCCCC----------cEEEEEEccc
Confidence 9999 777665554 544 33 35999999999999998 76 9999998654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-15 Score=130.03 Aligned_cols=255 Identities=8% Similarity=0.026 Sum_probs=180.1
Q ss_pred ceEEEeec--cceehhhhccccceeeeccccc----EEEEEeCCCCceEEEEEeecCCC-eEEEEEeEecCCCceeeeEe
Q 015220 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQ----RICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRS 169 (411)
Q Consensus 97 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~----~ic~lN~s~~evIrsifyN~~n~-slI~vSv~~sd~~s~L~cr~ 169 (411)
.|..+-.. ..++++-...|....|+..+++ ..... ....-|.++-++.... .|++.+ .|. .++.-
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~---~dg--~i~~w- 84 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGT---VQG--EILKV- 84 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEE---TTS--CEEEE-
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEc---CCC--eEEEE-
Confidence 34444433 3466666778999999998887 55544 5667899999998766 565533 222 22222
Q ss_pred eehhhh-hhCCCCCCCcceeecccC--CCC---eEEeeCCCCeEEEeecCCCeEEEEEeeC---------ceEEEEeccC
Q 015220 170 TRIEYI-RRGKPDAGFALFESESLK--WPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSISDK 234 (411)
Q Consensus 170 ~~~~~i-~~gk~~~~~~LF~~~~l~--~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~---------Ys~iysLs~~ 234 (411)
++ ..++. ...-. |++ -+.|.. +..|++++.|+++++||+++ .+++.++.+.
T Consensus 85 ----d~~~~~~~--------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T 1yfq_A 85 ----DLIGSPSF--------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp ----CSSSSSSE--------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred ----EeccCCce--------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC
Confidence 22 22211 11111 333 467777 78888899999999999999 7777777644
Q ss_pred -ceeEEEEeCCEEEEEEecCCCceeeEEEEecC-CcEEeEeeeccccCCcceeeeeec-c--eeEEeecCceeeEEEccc
Q 015220 235 -NVQEIKISPGIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFN-E--KLLVKQENENLQILDVRN 309 (411)
Q Consensus 235 -~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~t-G~~L~t~~~LL~h~K~I~FLE~~~-e--kllIKQe~~~LkI~dL~t 309 (411)
.|..+.+++.. +++.... -.|+||++.+ ++...... ..++..+|..+..++ + .++....+..++|||+.+
T Consensus 151 ~~v~~~~~~~~~-l~~~~~d---~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 151 NKIFTMDTNSSR-LIVGMNN---SQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp CCEEEEEECSSE-EEEEEST---TEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred CceEEEEecCCc-EEEEeCC---CeEEEEECCccccccceee-ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 89999999666 4444332 3589999999 77543222 457888999999987 4 346667889999999988
Q ss_pred c------eEEEeeccccCCCc---------eEEEEeec---eeEEEE-ecCeEEEEecC-Cceeeeeccc-cccCCCCcc
Q 015220 310 F------ELTEVSRTEFMTPS---------AFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDH-LLWHPDCNT 368 (411)
Q Consensus 310 ~------e~~~v~~T~f~hps---------AfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H-~~~~~~c~~ 368 (411)
+ +... +.-.|.. .+..+..+ ++++++ .|++|++||++ |+++.++.+| .. .+
T Consensus 226 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-----~v 297 (342)
T 1yfq_A 226 QGDDYNSSKRF---AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-----SV 297 (342)
T ss_dssp TCCSTTCTTCE---EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS-----EE
T ss_pred CCcccccccce---eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC-----Cc
Confidence 6 4443 3334433 77777765 667777 78899999999 9999999998 77 67
Q ss_pred ceEEEcCCCCEEEEEecCCC
Q 015220 369 NNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 369 n~i~Is~Dqd~iiS~~~d~~ 388 (411)
..+. |||++|+|+|.|..
T Consensus 298 ~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 298 VKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEEE--ECSSEEEEEEECTH
T ss_pred eEec--CCCCeEEEEecCCc
Confidence 8888 99999999999974
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=157.24 Aligned_cols=190 Identities=12% Similarity=0.042 Sum_probs=138.5
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceE----EEEeccC--ceeEEEEeC-------CEEEEEEecCCCceeeEEEEecCCc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTM----LYSISDK--NVQEIKISP-------GIMLLIFTKASGHVPLKILSIEDGT 268 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~----iysLs~~--~VqeIkISd-------G~~Lai~q~t~~~ipiKIl~I~tG~ 268 (411)
+++++++++.+.|++++|||+.+.++ .+++.++ .|..++.+| |.+||..... -.|+||++.+++
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D---gtvrlWd~~~~~ 246 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE---GTINFLEIIDNA 246 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT---SCEEEEECCCCS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC---CeEEEEEcCCCc
Confidence 68999999999999999999998764 3456643 799999995 4677776654 359999999886
Q ss_pred EE--------eEeeeccccCCcceeeeeeccee-EEeecCceeeEEEcccceE-EEeeccccCCCceEEEE--eec----
Q 015220 269 VL--------KSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFL--YEN---- 332 (411)
Q Consensus 269 ~L--------~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~-~~v~~T~f~hpsAfifL--y~s---- 332 (411)
.. .....+-+|+.+|..+..++++. ...+.+..++|||+.+++. .. +.-+|...+..+ +.+
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~---~~~~H~~~V~sv~~~~s~~g~ 323 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSF---YDQVHDSYILSVSTAYSDFED 323 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSE---EEECSSSCEEEEEEECCTTSC
T ss_pred cccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceE---EeecccccEEEEEEEcCCCCC
Confidence 32 11112567889999999876654 5566889999999998742 22 455799999888 322
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++|+|. .|++|+|||++ |+.+.++.+|... .++..|..+||++.++|++.|+ +|+|||+.+|+|+
T Consensus 324 ~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---~~v~~v~fsp~~~~l~s~~~d~----------tv~lwd~~~~~~~ 390 (524)
T 2j04_B 324 TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---SNLVPVVYCPQIYSYIYSDGAS----------SLRAVPSRAAFAV 390 (524)
T ss_dssp CEEEEEETTSEEEEECGGGHHHHCEEEEECSC---CSCCCEEEETTTTEEEEECSSS----------EEEEEETTCTTCC
T ss_pred eEEEEeccCCeEEEEECCCCCccccccccccc---CcccceEeCCCcCeEEEeCCCC----------cEEEEECcccccc
Confidence 689999 79999999998 8888899998741 2468899999999999999887 9999999999863
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-14 Score=131.24 Aligned_cols=193 Identities=9% Similarity=0.067 Sum_probs=146.2
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
|--+.|+.-..++++.+..+++++|||+.+.+++..+..+ .+..+.+| ||..|++.....+ .|++|++.+|+.+..
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~--~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASS--TLSVIDTTSNTVAGT 111 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCC--EEEEEECCCCeEEEE
Confidence 5567887655556678889999999999999999888844 89999999 7887777655443 489999999999887
Q ss_pred eeeccccCCcceeeeeecce--e-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEK--L-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVA 344 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ek--l-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~ 344 (411)
+. +...+..+..++++ + +..++++.|++||+.+++....-.. + .....+..+ .+|++. .+++|.
T Consensus 112 ~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~-~~~~~~~~~~dg~~l~~~~~~~~~v~ 183 (391)
T 1l0q_A 112 VK----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---G-RSPKGIAVTPDGTKVYVANFDSMSIS 183 (391)
T ss_dssp EE----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---C-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred Ee----CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---C-CCcceEEECCCCCEEEEEeCCCCEEE
Confidence 43 33567888888775 4 2345689999999999998773222 2 222333333 566777 788999
Q ss_pred EEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 345 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 345 iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+||++ |+.+..+..+. ....+.++|||+.|++++.+. .+|+|.+||+.+|+++
T Consensus 184 ~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~-------~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 184 VIDTVTNSVIDTVKVEA------APSGIAVNPEGTKAYVTNVDK-------YFNTVSMIDTGTNKIT 237 (391)
T ss_dssp EEETTTTEEEEEEECSS------EEEEEEECTTSSEEEEEEECS-------SCCEEEEEETTTTEEE
T ss_pred EEECCCCeEEEEEecCC------CccceEECCCCCEEEEEecCc-------CCCcEEEEECCCCeEE
Confidence 99999 77777776432 567899999999999998532 3469999999999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-14 Score=138.35 Aligned_cols=256 Identities=9% Similarity=0.056 Sum_probs=173.5
Q ss_pred ccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCC--CCCCCcceeeccc-CCCCeEE
Q 015220 123 ETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK--PDAGFALFESESL-KWPGFVE 199 (411)
Q Consensus 123 ~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk--~~~~~~LF~~~~l-~~PgfvE 199 (411)
.++++.+..-..+..-|.+|-++..+..++.+ ...|. ..+...++...... .....+++.-..- ..+-.+.
T Consensus 115 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat--~~~dg----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 188 (430)
T 2xyi_A 115 VCGKIEIEIKINHEGEVNRARYMPQNACVIAT--KTPSS----DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188 (430)
T ss_dssp ---CEEEEEEEEESSCCSEEEEETTEEEEEEE--ECSSS----CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE
T ss_pred CCCceEEEEEEcCCCcEEEEEECCCCCcEEEE--ECCCC----cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE
Confidence 34454443333444556677777755455542 22222 23333332211100 0112344432211 1234577
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceE-------EEEeccC--ceeEEEEeC--CEEEEEEecCCCceeeEEEEecCC-
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLKILSIEDG- 267 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~-------iysLs~~--~VqeIkISd--G~~Lai~q~t~~~ipiKIl~I~tG- 267 (411)
|+..+...|+++..|++++|||+.+.+. ...+..+ .|..+..++ +.++++.... -.|+||++.++
T Consensus 189 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d---g~i~i~d~~~~~ 265 (430)
T 2xyi_A 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD---QKLMIWDTRNNN 265 (430)
T ss_dssp ECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT---SEEEEEETTCSC
T ss_pred eCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC---CeEEEEECCCCC
Confidence 8765554888899999999999998321 3445444 799999994 5666665433 35899999998
Q ss_pred --cEEeEeeeccccCCcceeeeeecce---eEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEEE
Q 015220 268 --TVLKSFNHLLHRNKKVDFIEQFNEK---LLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFLT 337 (411)
Q Consensus 268 --~~L~t~~~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFlS 337 (411)
+.+.+ +-+|..+|..|..++++ ++....+..|++||+++ ++... +.-.|..++..+..+ .+|++
T Consensus 266 ~~~~~~~---~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~---~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 266 TSKPSHT---VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---SFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp SSSCSEE---EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---EEECCSSCEEEEEECSSCTTEEEE
T ss_pred CCcceeE---eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE---EeecCCCCEEEEEECCCCCCEEEE
Confidence 46665 45889999999999865 34567789999999998 44444 555688888888876 46888
Q ss_pred E-ecCeEEEEecCC---------------ceeeeeccccccCCCCccceEEEcCCCC-EEEEEecCCCCCccccCCceEE
Q 015220 338 F-RNRTVAVWNFRG---------------ELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNGKLF 400 (411)
Q Consensus 338 f-sd~tI~iWn~~G---------------el~~s~e~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d~~~~~~~~~~gtI~ 400 (411)
. .|++|.||+++. +++..+.+|.. .++.+.++|++. +|+|++.|. +|.
T Consensus 340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~s~dg----------~i~ 404 (430)
T 2xyi_A 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-----KISDFSWNPNEPWIICSVSEDN----------IMQ 404 (430)
T ss_dssp EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-----CEEEEEECSSSTTEEEEEETTS----------EEE
T ss_pred EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-----CceEEEECCCCCCEEEEEECCC----------CEE
Confidence 8 799999999984 78889999988 899999999999 999999887 999
Q ss_pred Eeeeccee
Q 015220 401 VSLLMFVT 408 (411)
Q Consensus 401 i~~i~tGk 408 (411)
||++.++.
T Consensus 405 iw~~~~~~ 412 (430)
T 2xyi_A 405 VWQMAENV 412 (430)
T ss_dssp EEEECHHH
T ss_pred EeEccccc
Confidence 99998754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-15 Score=153.54 Aligned_cols=184 Identities=14% Similarity=0.183 Sum_probs=152.6
Q ss_pred CCCeEEEeecCCCeEEEEEee--CceEEEEeccC--ceeEEEEe-C--CEEEEEEecCCCceeeEEEEecCCc--EEeEe
Q 015220 203 VNGKVLTYSAQDSIYKVFDLK--NYTMLYSISDK--NVQEIKIS-P--GIMLLIFTKASGHVPLKILSIEDGT--VLKSF 273 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~--~Ys~iysLs~~--~VqeIkIS-d--G~~Lai~q~t~~~ipiKIl~I~tG~--~L~t~ 273 (411)
++|+.|+.++.|++++|||+. +.+.+.++..+ .|..+..+ + |.+|++..... -|+||++.+|+ .+..
T Consensus 19 ~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg---~I~vwd~~~~~~~~~~~- 94 (753)
T 3jro_A 19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG---KVLIWKEENGRWSQIAV- 94 (753)
T ss_dssp SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS---CEEEEEEETTEEEEEEE-
T ss_pred CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC---eEEEEECCCCccccccc-
Confidence 468889999999999999999 67788888865 89999998 5 88888876543 48999999998 4444
Q ss_pred eeccccCCcceeeeeecc----eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----------------e
Q 015220 274 NHLLHRNKKVDFIEQFNE----KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----------------Q 333 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~e----kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----------------q 333 (411)
+.+|..+|..+..+++ .++....+..+++||+.++..... .+...|+..+..+..+ +
T Consensus 95 --~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~ 171 (753)
T 3jro_A 95 --HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171 (753)
T ss_dssp --ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC-EEEECCSSCEEEEEECCCC---------CGGGC
T ss_pred --ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce-eEeecCCCceEEEEecCcccccccccccCCCCC
Confidence 6689999999999976 456677889999999999843321 1455688888888753 5
Q ss_pred eEEEE-ecCeEEEEecC-C----ceeeeeccccccCCCCccceEEEcCC---CCEEEEEecCCCCCccccCCceEEEeee
Q 015220 334 LFLTF-RNRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~-G----el~~s~e~H~~~~~~c~~n~i~Is~D---qd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
.++++ .|++|++||++ + .++.++.+|.. .+..+..+|| |.+++|++.|. +|.+||+
T Consensus 172 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~~~~l~s~s~Dg----------~I~iwd~ 236 (753)
T 3jro_A 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----WVRDVAWSPTVLLRSYLASVSQDR----------TCIIWTQ 236 (753)
T ss_dssp CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-----CEEEEEECCCCSSSEEEEEEESSS----------CEEEEEE
T ss_pred EEEEEECCCeEEEEeccCCcccceeeeeecCCCC-----cEEEEEeccCCCCCCEEEEEecCC----------EEEEecC
Confidence 67777 89999999998 5 57779999988 8999999999 99999999987 9999999
Q ss_pred ccee
Q 015220 405 MFVT 408 (411)
Q Consensus 405 ~tGk 408 (411)
.+|+
T Consensus 237 ~~~~ 240 (753)
T 3jro_A 237 DNEQ 240 (753)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 9974
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=158.21 Aligned_cols=186 Identities=7% Similarity=0.015 Sum_probs=139.1
Q ss_pred EEeeC-----CCCeEEEeecCCCeEEEEEeeCce-----------EEEEecc--CceeEEEEeCCEEEEEEecCCCceee
Q 015220 198 VEFDD-----VNGKVLTYSAQDSIYKVFDLKNYT-----------MLYSISD--KNVQEIKISPGIMLLIFTKASGHVPL 259 (411)
Q Consensus 198 vEFDd-----~NGkiLt~~~~ds~ykVWdL~~Ys-----------~iysLs~--~~VqeIkISdG~~Lai~q~t~~~ipi 259 (411)
+.|.. ++|..|++.+.|+++||||+.+.+ ++.++.. ..|..+..+++..|++.... --|
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~D---gtV 289 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN---GFV 289 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETT---SEE
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCC---CEE
Confidence 56654 357899999999999999998753 2235554 37999999855566666543 368
Q ss_pred EEEEecCCcE-EeEeeeccccCCcceeee--eecce-eE--EeecCceeeEEEcccceEEEeeccccCCCc--eEEEEee
Q 015220 260 KILSIEDGTV-LKSFNHLLHRNKKVDFIE--QFNEK-LL--VKQENENLQILDVRNFELTEVSRTEFMTPS--AFIFLYE 331 (411)
Q Consensus 260 KIl~I~tG~~-L~t~~~LL~h~K~I~FLE--~~~ek-ll--IKQe~~~LkI~dL~t~e~~~v~~T~f~hps--AfifLy~ 331 (411)
+||++++|+. +.+ +-+|..+|..+. -.+++ .+ -.+.+..++|||+++++... +.-+|.. .+..++.
T Consensus 290 ~lWD~~~~~~~~~~---~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~---~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 290 AEFDLTDPEVPSFY---DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK---TTVSRFRGSNLVPVVY 363 (524)
T ss_dssp EEEETTBCSSCSEE---EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC---EEEEECSCCSCCCEEE
T ss_pred EEEECCCCCCceEE---eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc---ccccccccCcccceEe
Confidence 9999999853 344 458999999994 34443 33 34578999999999987543 2222221 2223333
Q ss_pred ---ceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 332 ---NQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 332 ---sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.+.|++. .|++|++||++ |..+.+|.+|.. .++.|+.||||.+|+|||.|. +|+|||+..
T Consensus 364 sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~-----~V~sva~Sp~g~~l~Sgs~Dg----------tv~lwd~~~ 428 (524)
T 2j04_B 364 CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET-----TITAIGVSRLHPMVLAGSADG----------SLIITNAAR 428 (524)
T ss_dssp ETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-----CEEEEECCSSCCBCEEEETTT----------EEECCBSCS
T ss_pred CCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-----ceEEEEeCCCCCeEEEEECCC----------EEEEEechH
Confidence 3678887 88899999999 888899999999 899999999999999999997 999999764
Q ss_pred e
Q 015220 407 V 407 (411)
Q Consensus 407 G 407 (411)
+
T Consensus 429 ~ 429 (524)
T 2j04_B 429 R 429 (524)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=143.13 Aligned_cols=194 Identities=15% Similarity=0.086 Sum_probs=127.4
Q ss_pred CeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEE-----EeccC--ceeEEEEe---------CCEEEEEEecCCCceee
Q 015220 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-----SISDK--NVQEIKIS---------PGIMLLIFTKASGHVPL 259 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iy-----sLs~~--~VqeIkIS---------dG~~Lai~q~t~~~ipi 259 (411)
....+..++++.|++.+.|+++|+||+++.++.. .+++| .|..+..| ||++||....-+ -+
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~---tv 168 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC---TL 168 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS---EE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC---eE
Confidence 3455667889999999999999999999987543 34544 89999998 589998876543 58
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeecce---eEEeecCceeeEEEcccceEEEee-cc-----------------
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK---LLVKQENENLQILDVRNFELTEVS-RT----------------- 318 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI~dL~t~e~~~v~-~T----------------- 318 (411)
+|||+.+++.+.. +++|..++..++-+++. ++....+..+++||+.+++...-. ..
T Consensus 169 ~~Wd~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 169 IIWRLTDEGPILA---GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEEEEETTEEEEE---EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred EEEECCCCceeee---ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999999998887 77899999999999754 345568899999999998764310 00
Q ss_pred ----ccCCCceEEEEeec----eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcC-------------
Q 015220 319 ----EFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS------------- 375 (411)
Q Consensus 319 ----~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~------------- 375 (411)
.-+|...+..+... +.+++. .|+++++||+. |.....+.+|.. .++.+.+++
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-----KLGPKNLLPNVQGISLFPSLLG 320 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCCSSC
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-----ccccEEEccccccccccCccee
Confidence 11233333333322 567777 89999999999 888888888876 333333333
Q ss_pred -------CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 376 -------DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 376 -------Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+.+++||+.|. +|+|||+.+|+++
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg----------~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHG----------LIQLINTYEKDSN 352 (393)
T ss_dssp CEECSSCTTEEEEEETTTT----------EEEEEETTCTTCC
T ss_pred EEEccCCCCEEEEEECCCC----------EEEEEECCCCcEE
Confidence 455778888876 9999999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-15 Score=138.51 Aligned_cols=180 Identities=14% Similarity=0.125 Sum_probs=146.2
Q ss_pred EEEeecCCCeEEEEEeeCceEEEEec--cC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCC
Q 015220 207 VLTYSAQDSIYKVFDLKNYTMLYSIS--DK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Ys~iysLs--~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K 281 (411)
+|+.+ -|++++|||+.+.+.+..+. ++ .|..++.| ||.+||+..... -|+||++++|+.+.+ +-+|..
T Consensus 118 ~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg---~v~iWd~~~~~~~~~---~~~h~~ 190 (420)
T 4gga_A 118 VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA---EVQLWDVQQQKRLRN---MTSHSA 190 (420)
T ss_dssp EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEEEE---ECCCSS
T ss_pred EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC---eEEEEEcCCCcEEEE---EeCCCC
Confidence 55544 48999999999999776554 33 59999999 899999876543 489999999999999 668999
Q ss_pred cceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cc----e
Q 015220 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GE----L 352 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Ge----l 352 (411)
.+..+...+..+...+.+..+++||+.+..... .++-+|...+..+..+ +.++++ .|+++.+|+.. |+ .
T Consensus 191 ~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~--~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 191 RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV--ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTSSSCEE--EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC
T ss_pred ceEEEeeCCCEEEEEeCCCceeEeeecccceee--EEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee
Confidence 999999888888888999999999999865543 2667788888888766 667777 88999999998 65 4
Q ss_pred eeeeccccccCCCCccceEEEcCCCC-EEEE--EecCCCCCccccCCceEEEeeecceeee
Q 015220 353 VTSFEDHLLWHPDCNTNNIYITSDQD-LIIS--YCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 353 ~~s~e~H~~~~~~c~~n~i~Is~Dqd-~iiS--~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+..+.+|.. .+..+..+|++. ++++ |+.|. +|++||+.||+++
T Consensus 269 ~~~~~~~~~-----~V~~~~~~p~~~~~la~~~gs~D~----------~I~iwd~~t~~~~ 314 (420)
T 4gga_A 269 LQTFTQHQG-----AVKAVAWCPWQSNVLATGGGTSDR----------HIRIWNVCSGACL 314 (420)
T ss_dssp SEEECCCSS-----CEEEEEECTTCTTEEEEEECTTTC----------EEEEEETTTTEEE
T ss_pred eeeecccCC-----ceeeeeeCCCcccEEEEEeecCCC----------EEEEEeCCccccc
Confidence 567888887 789999999765 5444 34555 9999999999985
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-15 Score=141.99 Aligned_cols=195 Identities=18% Similarity=0.135 Sum_probs=153.0
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeC----------ceEEEEeccC--ceeEEEEe-CCE-EEEEEecCCCceee
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----------YTMLYSISDK--NVQEIKIS-PGI-MLLIFTKASGHVPL 259 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~----------Ys~iysLs~~--~VqeIkIS-dG~-~Lai~q~t~~~ipi 259 (411)
.+-.+.|...++.+|+....++.++|||+.+ .+++.++..+ .|..+..+ +|. +|++.... -.|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i 206 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD---HTI 206 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT---SCE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC---CeE
Confidence 3457889888899999999999999999998 6778887755 88999999 454 66665443 348
Q ss_pred EEEEecCCcE----EeEeeeccccCCcceeeeeec-ceeE--EeecCceeeEEEcccceEEEeeccccCCCceEEEEeec
Q 015220 260 KILSIEDGTV----LKSFNHLLHRNKKVDFIEQFN-EKLL--VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN 332 (411)
Q Consensus 260 KIl~I~tG~~----L~t~~~LL~h~K~I~FLE~~~-ekll--IKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s 332 (411)
+||++.+++. +.....+.+|..+|..+..++ +..+ ....+..|+|||+++++......+...|...+.++..+
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence 9999998543 222333568999999999987 3333 44578999999999874211111445788888888876
Q ss_pred ----eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCC-EEEEEecCCCCCccccCCceEEEeee
Q 015220 333 ----QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 333 ----qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
.+|+++ .|++|++||++ +.++.++.+|.. .+..+..+||++ +++|++.|. +|.|||+
T Consensus 287 p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-----~v~~i~~sp~~~~~l~s~~~d~----------~i~iwd~ 351 (430)
T 2xyi_A 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-----EIFQVQWSPHNETILASSGTDR----------RLHVWDL 351 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-----CEEEEEECSSCTTEEEEEETTS----------CCEEEEG
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-----CEEEEEECCCCCCEEEEEeCCC----------cEEEEeC
Confidence 378888 78999999999 568999999988 899999999995 799999887 9999999
Q ss_pred cc
Q 015220 405 MF 406 (411)
Q Consensus 405 ~t 406 (411)
.+
T Consensus 352 ~~ 353 (430)
T 2xyi_A 352 SK 353 (430)
T ss_dssp GG
T ss_pred CC
Confidence 87
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-15 Score=157.83 Aligned_cols=191 Identities=12% Similarity=0.093 Sum_probs=147.2
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceE----EEEec-------c--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTM----LYSIS-------D--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT 268 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~----iysLs-------~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~ 268 (411)
++|+.|++...|+++|+||+.+.+. ++++. + ..|..|.+| ||.+||+..... -|+||++.+++
T Consensus 445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dg---tV~lwd~~~~~ 521 (902)
T 2oaj_A 445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETG---DVVLFKYEVNQ 521 (902)
T ss_dssp SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTS---CEEEEEEEECC
T ss_pred ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCc---EEEEEEecCcc
Confidence 5799999999999999999988642 23321 2 379999999 999999987654 58999999984
Q ss_pred EE------------------------------------------eEeeeccccCCcceeeeeecceeEEee--cCceeeE
Q 015220 269 VL------------------------------------------KSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQI 304 (411)
Q Consensus 269 ~L------------------------------------------~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI 304 (411)
.. .....+-+|+.+|..|+.++++ +|+. ++..|+|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~l 600 (902)
T 2oaj_A 522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLML 600 (902)
T ss_dssp C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEE
T ss_pred ccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEE
Confidence 21 0122256799999999999999 6665 6778999
Q ss_pred EEcccceEEEe-e-cccc-CCCceEEEEeec-----------eeEEEE-ecCeEEEEec---C-Cceeeeecccccc-CC
Q 015220 305 LDVRNFELTEV-S-RTEF-MTPSAFIFLYEN-----------QLFLTF-RNRTVAVWNF---R-GELVTSFEDHLLW-HP 364 (411)
Q Consensus 305 ~dL~t~e~~~v-~-~T~f-~hpsAfifLy~s-----------qlFlSf-sd~tI~iWn~---~-Gel~~s~e~H~~~-~~ 364 (411)
||+.+++...- . ++.. +|+.++..|+.+ +.++++ .|++|++||+ . |+.+++|.+|.-- +.
T Consensus 601 wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~ 680 (902)
T 2oaj_A 601 IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK 680 (902)
T ss_dssp EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS
T ss_pred EECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCC
Confidence 99988877531 1 3443 899999999988 778888 8899999998 4 9999999999732 22
Q ss_pred CCccceEE-Ec----------------------CCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 365 DCNTNNIY-IT----------------------SDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 365 ~c~~n~i~-Is----------------------~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+... .|. ++ +||.+|+|+ ++ +|+||++.||||+
T Consensus 681 ~~v~-~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~----------~ir~~~~~~~k~~ 736 (902)
T 2oaj_A 681 GPIH-KIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FD----------DIRLITLGKSKST 736 (902)
T ss_dssp CCCC-EEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SS----------EEEEECTTCCCEE
T ss_pred CceE-EEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--cc----------ceEEEeCccccce
Confidence 2222 333 44 788888887 66 8999999999986
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-14 Score=132.41 Aligned_cols=196 Identities=13% Similarity=0.143 Sum_probs=148.3
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
+.| .++|+.++....++.+++||+++.+.+.++.. ..+..+.++ +|..+++.....+ .|++|++.+|+.+..+.
T Consensus 175 ~~~-~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 175 ISI-PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISE--DISVIDRKTKLEIRKTD 251 (433)
T ss_dssp EEE-GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTT--EEEEEETTTTEEEEECC
T ss_pred EEE-cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCC--cEEEEECCCCcEEEEec
Confidence 566 56899999999999999999999999988874 389999999 6766665554333 58999999999988743
Q ss_pred eccccCCcceeeeeecce--eEEee--------cCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-e
Q 015220 275 HLLHRNKKVDFIEQFNEK--LLVKQ--------ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-R 339 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ek--llIKQ--------e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-s 339 (411)
....+..+..++++ +++.. ++..|++||+.+++..... .|+.....++.+ .+|++. .
T Consensus 252 ----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 252 ----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp ----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECSSTTEEEEEETT
T ss_pred ----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECCCCCEEEEEecC
Confidence 34568889998776 34444 3679999999999887632 233444444433 578886 8
Q ss_pred cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCC-----ccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD-----PLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~-----~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++|.+||++ |+++..+. |.. ....+.++|||+.|++++.+.... -.....|+|.+||+.+|+++
T Consensus 324 ~~~v~v~d~~~~~~~~~~~-~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIP-VFD-----KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSS-----SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCcEEEEec-CCC-----CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 9999999999 88888775 433 678999999999999988764110 01122489999999999875
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-14 Score=123.77 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=141.7
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEec--cC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs--~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
|+ +|+. +.|++++|||+.+.+++..++ ++ .|..++.+ +|.+|++..... -|+||++++|+.+.+ +-+
T Consensus 36 ~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg---~v~iw~~~~~~~~~~---~~~ 107 (318)
T 4ggc_A 36 GN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA---EVQLWDVQQQKRLRN---MTS 107 (318)
T ss_dssp TS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEEEE---EEC
T ss_pred CC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCC---cEEEeecCCceeEEE---ecC
Confidence 44 5554 459999999999999887775 22 69999999 888888876443 589999999999999 568
Q ss_pred cCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Ccee
Q 015220 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELV 353 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~ 353 (411)
|...+..+...+..+.....+..+++|+..++..... +..+|......+... +.++|. .|++|++||++ |+..
T Consensus 108 h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 108 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA--TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE--EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred ccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE--EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 9999999998888888889999999999998755432 666788888777755 677787 88999999998 6643
Q ss_pred ----eeeccccccCCCCccceEEEcCCCCEEE-EEecCCCCCccccCCceEEEeeecceeee
Q 015220 354 ----TSFEDHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 354 ----~s~e~H~~~~~~c~~n~i~Is~Dqd~ii-S~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.....|.. .+..+..++++..++ .++.+ ..|+|++||+.++++.
T Consensus 186 ~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~--------~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 186 WVPLQTFTQHQG-----AVKAVAWCPWQSNVLATGGGT--------SDRHIRIWNVCSGACL 234 (318)
T ss_dssp SCCSEEECCCCS-----CEEEEEECTTSTTEEEEEECT--------TTCEEEEEETTTCCEE
T ss_pred ccceeeecccCC-----ceEEEEecCCCCcEEEEEecC--------CCCEEEEEeccccccc
Confidence 34455555 677788888766444 32222 2359999999988753
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-13 Score=120.73 Aligned_cols=262 Identities=11% Similarity=0.072 Sum_probs=169.4
Q ss_pred ceehhhhccccceeeecccccEEEEEeCCCCc-eEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADE-VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e-vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
+++++-...|.-.++|..+++.+..+...... -++++-++...+.+++++ +++ ..+ +..+ +..|+.-
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~-~~v--~~~d---~~~~~~~--- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS-ESL--VKID---LVTGETL--- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT-TEE--EEEE---TTTCCEE---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---CCC-CeE--EEEE---CCCCCeE---
Confidence 45666667888899999999988887754322 256677777666655432 111 122 2222 2222210
Q ss_pred cceeecc----cCCCCeEEeeCCCCeEEEeec------------CCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEE
Q 015220 185 ALFESES----LKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIM 246 (411)
Q Consensus 185 ~LF~~~~----l~~PgfvEFDd~NGkiLt~~~------------~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~ 246 (411)
..+.... -..|.-+.|+. +|+.|.... .++.+.|||+.+.+.+..+. +..+..+.+| ||..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 148 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSC
T ss_pred eeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCE
Confidence 0011110 12577888874 565444443 57999999999999888776 4478889999 8877
Q ss_pred EEEEecCCCceeeEEEEecCCcEEeEeeecccc-CCcceeeeeecce--eEEeecCc-----------------------
Q 015220 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR-NKKVDFIEQFNEK--LLVKQENE----------------------- 300 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h-~K~I~FLE~~~ek--llIKQe~~----------------------- 300 (411)
|++.. -.|.+|++.+|+++..+.. ++ ..++. .++++ +++..+..
T Consensus 149 l~~~~-----~~i~~~d~~~~~~~~~~~~--~~~~~~~~---~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (337)
T 1pby_B 149 LYGLG-----RDLHVMDPEAGTLVEDKPI--QSWEAETY---AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR 218 (337)
T ss_dssp EEEES-----SSEEEEETTTTEEEEEECS--TTTTTTTB---CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred EEEeC-----CeEEEEECCCCcEeeeeec--cccCCCce---eCCCccEEeeeccCCCceeeeeeccccccccccccccc
Confidence 77762 2489999999999887542 22 23442 23433 33322221
Q ss_pred -eeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEc
Q 015220 301 -NLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 374 (411)
Q Consensus 301 -~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is 374 (411)
.|.+||+.+++...+. ...++.....++.+ .+|++ +++|.+||+. |+++.++..+. ....+.++
T Consensus 219 ~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~s 288 (337)
T 1pby_B 219 TGLLTMDLETGEMAMRE--VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH------SYYSVNVS 288 (337)
T ss_dssp EEEEEEETTTCCEEEEE--EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS------CCCEEEEC
T ss_pred cceEEEeCCCCCceEee--cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC------ceeeEEEC
Confidence 5799999999876432 22233444444444 34444 8999999999 88888876542 35689999
Q ss_pred CCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 375 SDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 375 ~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|||+.|++++.+. +|.+||+.||+.+
T Consensus 289 ~dg~~l~~~~~~~----------~i~v~d~~~~~~~ 314 (337)
T 1pby_B 289 TDGSTVWLGGALG----------DLAAYDAETLEKK 314 (337)
T ss_dssp TTSCEEEEESBSS----------EEEEEETTTCCEE
T ss_pred CCCCEEEEEcCCC----------cEEEEECcCCcEE
Confidence 9999888876654 9999999999864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=143.23 Aligned_cols=241 Identities=11% Similarity=0.084 Sum_probs=171.3
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCC---eEEee-CCCCeEEE
Q 015220 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFD-DVNGKVLT 209 (411)
Q Consensus 134 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg---fvEFD-d~NGkiLt 209 (411)
++..-|.++-++..++.|++.| .|. .++.-.+. .+ .+.++ ...-.|.+ .+.|. +.+|..|+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~---~dg--~I~vwd~~-----~~---~~~~~--~~l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCS---SDK--TIKIFEVE-----GE---THKLI--DTLTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEE---TTT--EEEEEEEE-----TT---EEEEE--EEECCCSSCEEEEEECCTTSCSEEE
T ss_pred cCcceeEEEEECCCCCeEEEEE---CCC--cEEEEecC-----CC---CCccc--eeccCCcCceEEEEecCCCCCCEEE
Confidence 4556788888888776665533 222 23322221 00 00000 01112333 34664 34589999
Q ss_pred eecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEeC---CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 210 YSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 210 ~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkISd---G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
+++.|++++|||+.+.+ .+..+..+ .|..+.+++ |.++++..... .|+||++.++....... +.+|..+
T Consensus 72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg---~I~vwdl~~~~~~~~~~-~~~~~~~ 147 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPII-IDAHAIG 147 (753)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCSSSCCCCEE-EECCSSC
T ss_pred EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC---cEEEEEeecCCCcceeE-eecCCCc
Confidence 99999999999999987 77777644 899999994 77887776443 69999999996554433 4688899
Q ss_pred ceeeeeec---------------ceeEEeecCceeeEEEcccceE-EEeeccccCCCceEEEEeec------eeEEEE-e
Q 015220 283 VDFIEQFN---------------EKLLVKQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFLYEN------QLFLTF-R 339 (411)
Q Consensus 283 I~FLE~~~---------------ekllIKQe~~~LkI~dL~t~e~-~~v~~T~f~hpsAfifLy~s------qlFlSf-s 339 (411)
|..+..++ ..++...++..|++||+.++.. ..+..+..+|+..+.+++.+ +.++|+ .
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 99999987 3456677899999999998742 23344777899999998865 567777 7
Q ss_pred cCeEEEEecC-Cc-----eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 340 NRTVAVWNFR-GE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 340 d~tI~iWn~~-Ge-----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|++|++||++ |+ .+....+|.. .+..+..+|||+.+++|+.|. +|.|||+.++.
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-----~v~~l~~spdg~~l~s~s~Dg----------~I~vwd~~~~~ 287 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPD-----VLWRASWSLSGNVLALSGGDN----------KVTLWKENLEG 287 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSS-----CCCCEEECTTTCCEEEECSSS----------CEECCBCCSSS
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCC-----ceEEEEEcCCCCEEEEEcCCC----------EEEEEecCCCC
Confidence 9999999999 54 3334444555 788999999999999999886 99999998643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-12 Score=117.31 Aligned_cols=275 Identities=14% Similarity=0.128 Sum_probs=180.6
Q ss_pred eehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc
Q 015220 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (411)
Q Consensus 107 ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L 186 (411)
++++-...|.-.+||..|++.+-.+....... ++-++...+.+++++. .++ +.+.. ++..|++ +.
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~--~~~----~i~~~---d~~~~~~----~~ 76 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFV--DTAITSDCSNVVVTSD--FCQ----TLVQI---ETQLEPP----KV 76 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE--EEEECSSSCEEEEEES--TTC----EEEEE---ECSSSSC----EE
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEccCCcc--eEEEcCCCCEEEEEeC--CCC----eEEEE---ECCCCce----eE
Confidence 34455567888999999999888877554444 8888887776666432 122 22233 2222221 12
Q ss_pred eeecccCCCCe-EEeeCCCCeEEEeecCC-C--eEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeE
Q 015220 187 FESESLKWPGF-VEFDDVNGKVLTYSAQD-S--IYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLK 260 (411)
Q Consensus 187 F~~~~l~~Pgf-vEFDd~NGkiLt~~~~d-s--~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiK 260 (411)
-....-..|-. +.|+. +|+.|.....+ + .+.|||+.+.+.+..+.. .....+.+| ||..|++.....+. .+.
T Consensus 77 ~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~i~ 154 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN-TVR 154 (331)
T ss_dssp EEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTT-EEE
T ss_pred EecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCc-eEE
Confidence 22333456888 88875 55554444333 4 999999999999988875 478999999 78666665544332 277
Q ss_pred EEEecCCcEEeEe-eeccccCCcceeeeeecce--eEEee-cCceeeEEEcccceE---EE-eeccccCCCceEEEEeec
Q 015220 261 ILSIEDGTVLKSF-NHLLHRNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRNFEL---TE-VSRTEFMTPSAFIFLYEN 332 (411)
Q Consensus 261 Il~I~tG~~L~t~-~~LL~h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t~e~---~~-v~~T~f~hpsAfifLy~s 332 (411)
+|++.++..+... ...+.....+.-+..++++ +++.. .+..|.+||+.+++. .. ++ ....|..+.|-...
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg 232 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDG 232 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTS
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCC
Confidence 8888765444322 2234455667889999887 45554 578999999999886 43 32 22355554443333
Q ss_pred e-eEEEE-ecCeEEEEecC-Cce--eeeeccccccCCC--CccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 333 Q-LFLTF-RNRTVAVWNFR-GEL--VTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 333 q-lFlSf-sd~tI~iWn~~-Gel--~~s~e~H~~~~~~--c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+ +|++- .+++|.+||+. |++ +.++..+...++. ...+.+.+||||+.|+..+.+. |+|.+||+.
T Consensus 233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~---------~~v~v~d~~ 303 (331)
T 3u4y_A 233 STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS---------RELKVFTIS 303 (331)
T ss_dssp SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT---------TEEEEEETT
T ss_pred CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC---------CcEEEEEec
Confidence 4 66666 57899999999 887 6677766443332 2347799999999887766653 699999998
Q ss_pred ceee
Q 015220 406 FVTC 409 (411)
Q Consensus 406 tGk~ 409 (411)
+..+
T Consensus 304 ~~~~ 307 (331)
T 3u4y_A 304 GKVV 307 (331)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 7654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-14 Score=139.02 Aligned_cols=183 Identities=13% Similarity=0.065 Sum_probs=122.2
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCc---eEEEEeccCc--e-------------------------eEEEEe-
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSISDKN--V-------------------------QEIKIS- 242 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Y---s~iysLs~~~--V-------------------------qeIkIS- 242 (411)
.||+-|-| |++ +.+.+++.|+..+. +++|+.+.++ | ..+.+|
T Consensus 49 ~~~~~~~~-----~~~--~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 49 RAGCKEPC-----IIT--ACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp ----CEEE-----EEE--EESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred cCCCCccE-----EEE--eccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 35665555 555 67899999999998 8999998554 3 344444
Q ss_pred C----CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe----------------------
Q 015220 243 P----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK---------------------- 296 (411)
Q Consensus 243 d----G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK---------------------- 296 (411)
| |+.++..... ++||+|.+|+++.+. .-+|.+.|+.+.+.+++.+++
T Consensus 122 d~~~~~~~l~s~g~~-----~~v~~l~~g~lv~ss--~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~ 194 (356)
T 2w18_A 122 DDESEKQVLLKSGNI-----KAVLGLTKRRLVSSS--GTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE 194 (356)
T ss_dssp ----CCEEEEEEEEE-----EEEEEETTTEEEEEE--SSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred CccccccEEEeCCCe-----EEEEecCCCcEEEec--ccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence 5 7777775422 667777777777761 235667777777766554322
Q ss_pred -----ecCceeeEEEcccceEEEeeccccCCC---ceEEEEeec---eeE------------EEE-ecCeEEEEecC-Cc
Q 015220 297 -----QENENLQILDVRNFELTEVSRTEFMTP---SAFIFLYEN---QLF------------LTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 297 -----Qe~~~LkI~dL~t~e~~~v~~T~f~hp---sAfifLy~s---qlF------------lSf-sd~tI~iWn~~-Ge 351 (411)
+.+..|||||+.+|+... |+-+|. ..+..++.+ +++ +|+ .|++|++||+. |.
T Consensus 195 ~LaSgS~D~TIkIWDl~TGk~l~---tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTGQLLK---KMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred eEEEecCCCcEEEEECCCCcEEE---EEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 579999999999999888 554433 233323333 343 556 67899999999 88
Q ss_pred eeeee-----ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSF-----EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~-----e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+..+ ++|... .+-.+.+|.+++||+.|. ||+|||+.||||+
T Consensus 272 ~l~v~~~~~p~Gh~~~-------~lsg~~sg~~lASgS~Dg----------TIkIWDl~tGk~l 318 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGR-------FLEGDVKDHCAAAILTSG----------TIAIWDLLLGQCT 318 (356)
T ss_dssp EEEEEEECCCTTCCCC-------EEEEEEETTEEEEEETTS----------CEEEEETTTCSEE
T ss_pred EEEEEEeeccCCCcce-------eEccccCCCEEEEEcCCC----------cEEEEECCCCcEE
Confidence 77766 477551 222344478999999997 9999999999986
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-12 Score=110.65 Aligned_cols=277 Identities=9% Similarity=0.014 Sum_probs=168.7
Q ss_pred ceehhh-hccccceeeecc-cccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 015220 106 DIVFAL-AQSGVCAAFCRE-TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (411)
Q Consensus 106 dii~~L-~~sG~c~af~~~-t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 183 (411)
.++++- ...|...+|+.. +++....--....+-+.++-++...+.|++++. ++ ..++...+..+ .|++
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~~-~~v~~~~~~~~---~~~~--- 74 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PE-FRVLAYRIAPD---DGAL--- 74 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TT-TEEEEEEECTT---TCCE---
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeec---CC-CeEEEEEecCC---CCce---
Confidence 334443 456777888763 454332222223445667777776666655331 21 23433333210 1111
Q ss_pred CcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEe---eCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCcee
Q 015220 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL---KNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 184 ~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL---~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ip 258 (411)
..+-.-..-..|..+.|+.-...+++.+..++.+.|||+ .+.+.+..+... .+..+.+| ||..|++.....+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--~ 152 (343)
T 1ri6_A 75 TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD--R 152 (343)
T ss_dssp EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT--E
T ss_pred eeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCC--E
Confidence 111111112378889998655556677777999999999 667777777644 78999999 7877777764444 3
Q ss_pred eEEEEecC-CcEEeEe--eeccccCCcceeeeeecce--eEEee-cCceeeEEEcc--cceEEE---ee--ccccCCCce
Q 015220 259 LKILSIED-GTVLKSF--NHLLHRNKKVDFIEQFNEK--LLVKQ-ENENLQILDVR--NFELTE---VS--RTEFMTPSA 325 (411)
Q Consensus 259 iKIl~I~t-G~~L~t~--~~LL~h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~--t~e~~~---v~--~T~f~hpsA 325 (411)
|.+|++.+ |++.... ....+....+..+..++++ +++.. .+..+.+||+. +++... +. +..+.....
T Consensus 153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence 89999998 8765433 3334445567778888876 44554 78899999994 454422 11 111111223
Q ss_pred EEEEeec----eeEEEE-ecCeEEEEecC--C---ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccC
Q 015220 326 FIFLYEN----QLFLTF-RNRTVAVWNFR--G---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (411)
Q Consensus 326 fifLy~s----qlFlSf-sd~tI~iWn~~--G---el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~ 395 (411)
...++.+ .+|++. .+++|.+|+++ + ..+..+..+. ....++++|||+.|+.++.++
T Consensus 233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~-------- 298 (343)
T 1ri6_A 233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET------QPRGFNVDHSGKYLIAAGQKS-------- 298 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS------SCCCEEECTTSSEEEEECTTT--------
T ss_pred ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC------ccceEEECCCCCEEEEecCCC--------
Confidence 3334433 566677 68999999998 2 2444554432 256799999999888887532
Q ss_pred CceEEEe--eecceee
Q 015220 396 NGKLFVS--LLMFVTC 409 (411)
Q Consensus 396 ~gtI~i~--~i~tGk~ 409 (411)
|+|.+| |..||++
T Consensus 299 -~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 299 -HHISVYEIVGEQGLL 313 (343)
T ss_dssp -CEEEEEEEETTTTEE
T ss_pred -CeEEEEEEcCCCcee
Confidence 499999 4457865
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-14 Score=150.20 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=140.0
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC------ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE------
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV------ 269 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~------~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~------ 269 (411)
|+|+.|+....|++.+|||.++ ++..+.++ .|..+..| ||.+||+....+. |+||++++|++
T Consensus 95 PdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGt---VkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 95 PIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGE---LQFFSIRKNSENTPEFY 169 (588)
T ss_dssp SSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSE---EEEEECCCCTTTCCCCE
T ss_pred CCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCE---EEEEECCCCccccccce
Confidence 4999999999999999999766 77777733 39999999 9999999987554 89999999973
Q ss_pred -EeEee-eccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeecccc-CCCceEEEEee-ceeEEEEecCeEEE
Q 015220 270 -LKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF-MTPSAFIFLYE-NQLFLTFRNRTVAV 345 (411)
Q Consensus 270 -L~t~~-~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f-~hpsAfifLy~-sqlFlSfsd~tI~i 345 (411)
++++. +.-+|...|.-+.-++++++..+.++.+++||+.+++...+..|+. +|...+..++. .+.+++.++++|++
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~~~tIkL 249 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTCPGYVHK 249 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEECSSEEEE
T ss_pred eeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEeCCeEEE
Confidence 56643 3367889999999999997777899999999999988532222432 45555555554 47888888999999
Q ss_pred EecCCcee-eeeccccccCCCCccceEEE--cCCCCEEEEEecCC
Q 015220 346 WNFRGELV-TSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKAD 387 (411)
Q Consensus 346 Wn~~Gel~-~s~e~H~~~~~~c~~n~i~I--s~Dqd~iiS~~~d~ 387 (411)
|++.|... ....+|.. .+..|.+ |||+..|++++.|.
T Consensus 250 Wd~~~~~~~~~~~gh~~-----~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 250 IDLKNYSISSLKTGSLE-----NFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp EETTTTEEEEEECSCCS-----CCCEEEETTCSSCEEEEECSSCE
T ss_pred EECCCCeEEEEEcCCCc-----eEEEEEeeeCCCCCEEEEEcCCC
Confidence 99995555 33338998 8999999 99999999998775
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=129.93 Aligned_cols=181 Identities=7% Similarity=-0.004 Sum_probs=121.3
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe-CC-EEEEEEecCCCceeeEEEEecCCcEEeEee----
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PG-IMLLIFTKASGHVPLKILSIEDGTVLKSFN---- 274 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG-~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~---- 274 (411)
.+|+.|++.+.|+++||||+++.+++..+.. ..|..+..+ ++ .+|+...... -|+|||+.+|+...+..
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~---~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNG---NIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTS---EEEEEETTCCC----------
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCC---EEEEEECCCCcccccccccCC
Confidence 4899999999999999999999887766653 389999999 44 4666665433 58999999998766432
Q ss_pred ------------------eccccCCcceeeeee-cc--eeEEeecCceeeEEEcccceEEEeeccccCCCceEEE-----
Q 015220 275 ------------------HLLHRNKKVDFIEQF-NE--KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF----- 328 (411)
Q Consensus 275 ------------------~LL~h~K~I~FLE~~-~e--kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif----- 328 (411)
..-+|...+..+..+ ++ .++-...++.+++||+.+++... ++..|...+-.
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~---~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN---EISDSTMKLGPKNLLP 307 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSC
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc---eEeeecCccccEEEcc
Confidence 124667777777765 33 34556688999999999876554 22111111111
Q ss_pred --------------Ee---eceeE-EEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 329 --------------LY---ENQLF-LTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 329 --------------Ly---~sqlF-lSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
++ ..++| +++ .|++|++||.. |+++..+.+|.. .+..++.||||..|++++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-----~V~svafspdG~~LA~as~~-- 380 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-----PIVDFCWHQDGSHLAIATEG-- 380 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-----CEEEEEECTTSSEEEEEESS--
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-----cEEEEEEcCCCCEEEEEeCC--
Confidence 11 12334 456 68999999999 999999999887 79999999999999999866
Q ss_pred CCccccCCceEEEeeec
Q 015220 389 DDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~ 405 (411)
.+.+|.+.
T Consensus 381 ---------Gv~lvrL~ 388 (393)
T 4gq1_A 381 ---------SVLLTRLM 388 (393)
T ss_dssp ---------EEEEEEEG
T ss_pred ---------CeEEEEEe
Confidence 67777764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=116.69 Aligned_cols=152 Identities=9% Similarity=0.062 Sum_probs=119.6
Q ss_pred CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc----EEeEeeeccccCCcceeeeeec----ceeEEeecCceeeE
Q 015220 234 KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT----VLKSFNHLLHRNKKVDFIEQFN----EKLLVKQENENLQI 304 (411)
Q Consensus 234 ~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~----~L~t~~~LL~h~K~I~FLE~~~----ekllIKQe~~~LkI 304 (411)
+.|..+.++ +|.+|++.... -.|+||++.+++ .+.+ +-+|..+|..++.++ ..++....+..|++
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSD---QHIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETT---SEEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cceeEEEEcCCCCEEEEeeCC---CeEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 389999999 88888887643 369999999985 4444 558999999999986 33455678899999
Q ss_pred EEcccc---------eEEEeeccccCCCceEEEEeec-----eeEEEE-ecCeEEEEecC-Cce----------------
Q 015220 305 LDVRNF---------ELTEVSRTEFMTPSAFIFLYEN-----QLFLTF-RNRTVAVWNFR-GEL---------------- 352 (411)
Q Consensus 305 ~dL~t~---------e~~~v~~T~f~hpsAfifLy~s-----qlFlSf-sd~tI~iWn~~-Gel---------------- 352 (411)
||+.++ +... +...|+..+..+..+ +++++. .|++|++||++ ++.
T Consensus 86 wd~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLC---TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEECTTSCTTSSCSEEEEE---EECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EecCCCcccccccCcceee---eecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 999987 3344 666788888888754 457777 88999999987 543
Q ss_pred --------------------------------------------eeeeccccccCCCCccceEEEcCCC----CEEEEEe
Q 015220 353 --------------------------------------------VTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYC 384 (411)
Q Consensus 353 --------------------------------------------~~s~e~H~~~~~~c~~n~i~Is~Dq----d~iiS~~ 384 (411)
+.++.+|.. .++.+..+||+ ++|++++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS-----LIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS-----CEEEEEECCCSSCSSEEEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc-----ceeEEEECCCCCCcceEEEEEc
Confidence 345556655 78999999999 8999999
Q ss_pred cCCCCCccccCCceEEEeeecceee
Q 015220 385 KADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 385 ~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.|. +|+|||+.++++
T Consensus 238 ~dg----------~i~iwd~~~~~~ 252 (351)
T 3f3f_A 238 KDG----------RIRIFKITEKLS 252 (351)
T ss_dssp TTS----------CEEEEEEEECC-
T ss_pred CCC----------eEEEEeCCCCcC
Confidence 987 999999998754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-13 Score=134.64 Aligned_cols=194 Identities=12% Similarity=0.099 Sum_probs=147.9
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEe--cCCc
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSI--EDGT 268 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I--~tG~ 268 (411)
..|.|. || ++|+.++.+..++++.|||..+.+++.+|. ++.+..+++| ||.+|++.... --|.+|++ .|++
T Consensus 139 ~~~~~~-~~-p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 139 KKQLND-LD-LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD---ARIDMIDLWAKEPT 213 (543)
T ss_dssp SSCCSC-CC-GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCE
T ss_pred cccccc-cC-CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC---CeEEEEECcCCCCc
Confidence 356665 66 578999999999999999999999999998 6679999999 99999998865 55999999 9999
Q ss_pred EEeEeeeccccCCcceeeeeec----ce--eEEeec-CceeeEEEcccceEEEeecccc-------CCCc-eEEEEeec-
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFN----EK--LLVKQE-NENLQILDVRNFELTEVSRTEF-------MTPS-AFIFLYEN- 332 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~----ek--llIKQe-~~~LkI~dL~t~e~~~v~~T~f-------~hps-AfifLy~s- 332 (411)
++.++. +...+..++.++ ++ +++..+ ++.+.+||..+++....-.+.- +||+ .+..++.+
T Consensus 214 ~~~~i~----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 214 KVAEIK----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp EEEEEE----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred EEEEEe----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 998844 345678899997 54 456653 7999999999999887433321 2455 34444433
Q ss_pred ---eeEEEE-ecCeEEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEEEe-cCCCCCccccCCceEEEeeec
Q 015220 333 ---QLFLTF-RNRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYC-KADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 333 ---qlFlSf-sd~tI~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~-~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.++++. .+++|.+||.. ++.+. +..+|-. ....+++||||+.++..+ .++ +|.+||..
T Consensus 290 ~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~-----~~~~~~~spdg~~l~va~~~~~----------~v~v~D~~ 354 (543)
T 1nir_A 290 EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP-----FLHDGGWDSSHRYFMTAANNSN----------KVAVIDSK 354 (543)
T ss_dssp SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCS-----SCCCEEECTTSCEEEEEEGGGT----------EEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCc-----CccCceECCCCCEEEEEecCCC----------eEEEEECC
Confidence 677777 78899999998 55333 2223433 456799999999766554 455 99999999
Q ss_pred ceeee
Q 015220 406 FVTCK 410 (411)
Q Consensus 406 tGk~~ 410 (411)
||||+
T Consensus 355 tg~l~ 359 (543)
T 1nir_A 355 DRRLS 359 (543)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 99985
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-11 Score=107.71 Aligned_cols=197 Identities=12% Similarity=0.058 Sum_probs=145.3
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc-----------eeEEEEe-CCEEEEEEecCCCceeeE
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-----------VQEIKIS-PGIMLLIFTKASGHVPLK 260 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~-----------VqeIkIS-dG~~Lai~q~t~~~ipiK 260 (411)
..|.-+.|+.-..++++....++.+.+||+++.+.+..+.... +..+.+| ||..|++..... .--|.
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~~i~ 167 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-ESVIW 167 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-SCEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-CceEE
Confidence 4577888987666788888889999999999999988887542 7889999 777666665321 23478
Q ss_pred EEEecCCcEEeEeeeccccCCcceeeeeecc--eeEEeecCceeeEEEcccceEEEeecc-ccCCCceEEEEeec----e
Q 015220 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEVSRT-EFMTPSAFIFLYEN----Q 333 (411)
Q Consensus 261 Il~I~tG~~L~t~~~LL~h~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v~~T-~f~hpsAfifLy~s----q 333 (411)
+|++.+|+.+..+. .+...+.-+..+++ .+++..++..|.+||+.+++....-.. ..+++..+..++.+ .
T Consensus 168 ~~d~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQ---NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp EEETTTTEEEEEEC---CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred EEcCCCCceEEEec---CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence 89999999998844 23445677888765 478888899999999999998763222 11233333333332 5
Q ss_pred eEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEe-cCCCCCccccCCceEEEeeecceeee
Q 015220 334 LFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC-KADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~-~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|++- .+++|.+||+. |+++..+.-+.. ..+.++|||+.++..+ .+ |+|.+||+.||+++
T Consensus 245 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------~~~~~s~dg~~l~v~~~~~----------~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTRNGNILAKVAAPES-------LAVLFNPARNEAYVTHRQA----------GKVSVIDAKSYKVV 307 (353)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEEEECSSC-------CCEEEETTTTEEEEEETTT----------TEEEEEETTTTEEE
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCCC-------ceEEECCCCCEEEEEECCC----------CeEEEEECCCCeEE
Confidence 77777 45899999998 998888775332 4589999999555444 44 49999999999874
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.2e-11 Score=106.36 Aligned_cols=202 Identities=9% Similarity=0.110 Sum_probs=138.3
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEee---CceEEEEeccC-----------ceeEEEEe-CCEEEEEEecCCC
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDK-----------NVQEIKIS-PGIMLLIFTKASG 255 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~---~Ys~iysLs~~-----------~VqeIkIS-dG~~Lai~q~t~~ 255 (411)
....|..+.|+.-...+++.+..+++++||++. ..+.+..+... .+..+.+| ||. |++.....+
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC
Confidence 356799999986544566666688999999997 45566666432 47889999 888 555554444
Q ss_pred ceeeEEEEec-CCcEEeEeeeccccCCcceeeeeecce--eEEe-ecCceeeEEEccc--ceEEEeeccccCCC------
Q 015220 256 HVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVRN--FELTEVSRTEFMTP------ 323 (411)
Q Consensus 256 ~ipiKIl~I~-tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~t--~e~~~v~~T~f~hp------ 323 (411)
.+.+|++. +|++.......++....+.-+..++++ +++. ..++.+.+||+.. ++...+.. ....|
T Consensus 163 --~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-~~~~~~~~~~~ 239 (347)
T 3hfq_A 163 --KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI-VKTIPADYTAH 239 (347)
T ss_dssp --EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-EESSCTTCCSC
T ss_pred --EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-eeecCCCCCCC
Confidence 57899999 787654433334444456668888886 4553 4678999999984 66544321 11122
Q ss_pred ceEEEEeec----eeEEEE-ecCeEEEEecC--C--ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcccc
Q 015220 324 SAFIFLYEN----QLFLTF-RNRTVAVWNFR--G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (411)
Q Consensus 324 sAfifLy~s----qlFlSf-sd~tI~iWn~~--G--el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~ 394 (411)
.....++.+ .+|++. .+++|.+|+++ | .++.++..|-. ....+++||||+.|++++.+.
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~-----~~~~~~~spdg~~l~v~~~~~------- 307 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD-----FPRDFDLDPTEAFVVVVNQNT------- 307 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS-----CCCEEEECTTSSEEEEEETTT-------
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC-----CcCeEEECCCCCEEEEEEcCC-------
Confidence 234444444 467777 48999999997 5 34556666544 467899999999888877653
Q ss_pred CCceEEEe--eecceeee
Q 015220 395 GNGKLFVS--LLMFVTCK 410 (411)
Q Consensus 395 ~~gtI~i~--~i~tGk~~ 410 (411)
|+|.+| |..||++.
T Consensus 308 --~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 308 --DNATLYARDLTSGKLS 323 (347)
T ss_dssp --TEEEEEEECTTTCCEE
T ss_pred --CcEEEEEEeCCCCeEE
Confidence 489999 66789864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-12 Score=128.07 Aligned_cols=279 Identities=10% Similarity=0.048 Sum_probs=192.0
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
+.++++-...|.-+++|..|++.+-.+..... ++++-++...+.|.+.| .| .. .+..++.. .. +.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~---~d--~~--V~v~D~~~-~t-----~~ 213 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIG---RD--AR--IDMIDLWA-KE-----PT 213 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEE---TT--SE--EEEEETTS-SS-----CE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEEC---CC--Ce--EEEEECcC-CC-----Cc
Confidence 34566667788899999999999988876554 89998999888877755 12 12 22222200 11 11
Q ss_pred cceeecccCCCCeEEeeCC---CCeEEE-eecCCCeEEEEEeeCceEEEEecc------------C-ceeEEEEe-CCEE
Q 015220 185 ALFESESLKWPGFVEFDDV---NGKVLT-YSAQDSIYKVFDLKNYTMLYSISD------------K-NVQEIKIS-PGIM 246 (411)
Q Consensus 185 ~LF~~~~l~~PgfvEFDd~---NGkiLt-~~~~ds~ykVWdL~~Ys~iysLs~------------~-~VqeIkIS-dG~~ 246 (411)
.+-+-..-.+|-.+.|+.. +|+.|. .+-.+++++|||..+.+++..++- + .+..|.+| +|-.
T Consensus 214 ~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 214 KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred EEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 1222122346888999761 666554 444689999999999999988863 2 68899999 4655
Q ss_pred EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEe-ecCceeeEEEcccceEEEeecc-ccCC
Q 015220 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVK-QENENLQILDVRNFELTEVSRT-EFMT 322 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIK-Qe~~~LkI~dL~t~e~~~v~~T-~f~h 322 (411)
+++.....+ -|.+|++.+++.+.... +++.+.+.-+..++++. ++. +.+++|.+||+.++++...-.+ .-.|
T Consensus 294 ~~vs~~~~g--~i~vvd~~~~~~l~~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 294 FIVNVKETG--KVLLVNYKDIDNLTVTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp EEEEETTTT--EEEEEECTTSSSCEEEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred EEEEECCCC--eEEEEEecCCCcceeEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence 555554443 67899999998776222 34556677788888864 444 4688999999999998873222 2236
Q ss_pred Cc-eEEEEe--eceeEEEE--ecCeEEEEecC--------CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCC
Q 015220 323 PS-AFIFLY--ENQLFLTF--RNRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSD 389 (411)
Q Consensus 323 ps-AfifLy--~sqlFlSf--sd~tI~iWn~~--------Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~ 389 (411)
|. ...|.. ..++|+|. .|++|.||+.+ ++.+.++..|-. ..-.|..+|||..|.+.+.-.++
T Consensus 370 ~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~-----~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 370 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-----GSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC-----CceEEEcCCCCCcEEEecCCCCC
Confidence 63 333332 25788887 47999999986 578999999976 45568899999999998842210
Q ss_pred CccccCCceEEEeeecceeee
Q 015220 390 DPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 390 ~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+..++|.+||+.|+++.
T Consensus 445 ---~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 445 ---ARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp ---HHHHTCEEEEETTCTTSC
T ss_pred ---cccCceEEEEECCCCCCC
Confidence 012359999999999864
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-12 Score=112.54 Aligned_cols=197 Identities=12% Similarity=0.072 Sum_probs=134.7
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--------ceeEEEEe-CCEEEEEEecC---------CC
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--------NVQEIKIS-PGIMLLIFTKA---------SG 255 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--------~VqeIkIS-dG~~Lai~q~t---------~~ 255 (411)
.|..+.|+.-..++++....++.+.+||+.+.+.+..+... .+..+.+| ||..|++.... ..
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 37778886433346677778999999999999988877632 27899999 88888877643 01
Q ss_pred ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeec-cccCCC-----------
Q 015220 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR-TEFMTP----------- 323 (411)
Q Consensus 256 ~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~-T~f~hp----------- 323 (411)
.-.|.+|++++|+....... +.+...+..+..++++-++. .++.|.+||+.+++....-+ ..+..|
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~l~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRT-FPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 201 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEE-EECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred CCeEEEEECCCccccceeee-ccCCCcccceeECCCCcEEE-ccCcEEEEeCCCCceeccccccccCCccccCccceeee
Confidence 13689999999776554332 23334577777887765444 35559999999998776222 111111
Q ss_pred ------------ceEE-----------------------------------------EE---e-ec-eeEEEEecCeEEE
Q 015220 324 ------------SAFI-----------------------------------------FL---Y-EN-QLFLTFRNRTVAV 345 (411)
Q Consensus 324 ------------sAfi-----------------------------------------fL---y-~s-qlFlSfsd~tI~i 345 (411)
..+. .+ . .. .+|++ +++|.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~ 279 (349)
T 1jmx_B 202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAK 279 (349)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEE
T ss_pred cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEE
Confidence 0000 01 1 12 34444 889999
Q ss_pred EecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 346 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 346 Wn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
||+. |+++.++..+. ....+.+||||+.|++++.+. +|.+||..||+++
T Consensus 280 ~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~----------~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 280 YDLKQRKLIKAANLDH------TYYCVAFDKKGDKLYLGGTFN----------DLAVFNPDTLEKV 329 (349)
T ss_dssp EETTTTEEEEEEECSS------CCCEEEECSSSSCEEEESBSS----------EEEEEETTTTEEE
T ss_pred EECccCeEEEEEcCCC------CccceEECCCCCEEEEecCCC----------eEEEEecccccee
Confidence 9998 88888876432 245799999999888865554 9999999999875
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-13 Score=131.55 Aligned_cols=224 Identities=9% Similarity=-0.004 Sum_probs=151.9
Q ss_pred eEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc-----eeEEEE
Q 015220 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-----VQEIKI 241 (411)
Q Consensus 167 cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~-----VqeIkI 241 (411)
++.++++++..+++... ...|.|- ++|+.++ ...|+++++||+.+.+....+.++. |..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~--------~~~~~~s----pdg~~~~-~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~ 68 (723)
T 1xfd_A 2 KKKVTVEDLFSEDFKIH--------DPEAKWI----SDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI 68 (723)
T ss_dssp CCCCCHHHHTCTTTCCC--------CCCCCBS----SSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEE
T ss_pred CccccHHHHhCCCCccc--------ccccEEc----CCCcEEE-EeCCCCEEEEECCCCcEEEEeccccccccccceEEE
Confidence 45577888888765321 1222222 4788554 4788999999999999888887653 899999
Q ss_pred e-CCEEEEEEecCCC------ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe-ecCceeeEEEcccceEE
Q 015220 242 S-PGIMLLIFTKASG------HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELT 313 (411)
Q Consensus 242 S-dG~~Lai~q~t~~------~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK-Qe~~~LkI~dL~t~e~~ 313 (411)
| ||..|++...... ..-+.||++.+|+. ..+...-++...+..+..++++-.|+ ..+..|.+||+.+++..
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI 147 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 9 9998888765432 26788999999987 44333345555688999999885333 34479999999999888
Q ss_pred Eeecccc------CCCc---------eEEEEeec---eeEEEE-ec----------------------------------
Q 015220 314 EVSRTEF------MTPS---------AFIFLYEN---QLFLTF-RN---------------------------------- 340 (411)
Q Consensus 314 ~v~~T~f------~hps---------AfifLy~s---qlFlSf-sd---------------------------------- 340 (411)
.+....- ++|. .+..+..+ +.+++. .+
T Consensus 148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 227 (723)
T 1xfd_A 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS 227 (723)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence 7532210 0011 01233333 444433 22
Q ss_pred CeEEEEecC-Cceeeeeccccc-cCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 341 RTVAVWNFR-GELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 341 ~tI~iWn~~-Gel~~s~e~H~~-~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+|.+||+. |+..+.+..|.. ...+..+..+..||||++|++.+... ...++|.+||+.||++.
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~------~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA------QNVSILTLCDATTGVCT 293 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT------SCEEEEEEEETTTCCEE
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC------CCeEEEEEEeCCCCcce
Confidence 289999999 666677776521 11234678899999999998887664 23469999999999874
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.3e-12 Score=111.81 Aligned_cols=189 Identities=9% Similarity=0.038 Sum_probs=131.0
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE-EeEeee
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV-LKSFNH 275 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~-L~t~~~ 275 (411)
|+...+++++....++++.|||+.+.+.+..+.. ..+ .+.+| ||..|++...... -|.+|++++|++ ...
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~--~i~~~d~~~~~~~~~~--- 78 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQ--TLVQIETQLEPPKVVA--- 78 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTC--EEEEEECSSSSCEEEE---
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCC--eEEEEECCCCceeEEe---
Confidence 6777889999999999999999999998877763 366 89999 8887777666554 678899999998 555
Q ss_pred ccccCCcceeeeeeccee--EEeecC-c--eeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEEe-cCe-EE
Q 015220 276 LLHRNKKVDFIEQFNEKL--LVKQEN-E--NLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTFR-NRT-VA 344 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekl--lIKQe~-~--~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSfs-d~t-I~ 344 (411)
+-++..+..-+..++++- +...++ + .|.+||+.+++....-.. -.+| ..++.+ .+|++.. +++ |.
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~---~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDA---VGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTE---EEEEECTTSSCEEEEEETTTTEEE
T ss_pred cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCc---cceEECCCCCEEEEEecCCCceEE
Confidence 334555555488887754 433333 2 899999999998763211 1233 444433 4777764 477 99
Q ss_pred EEecCC-ceeeeeccccccCCCCccceEEEcCCCCEE-EEEecCCCCCccccCCceEEEeeecceee
Q 015220 345 VWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 345 iWn~~G-el~~s~e~H~~~~~~c~~n~i~Is~Dqd~i-iS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+|+++. ..+.... ............+.++|||+.| +++..+ |+|.+||+.+|++
T Consensus 155 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 155 RFKIDADGVLFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIG----------NSIGILETQNPEN 210 (331)
T ss_dssp EEEECTTCCEEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTT----------TEEEEEECSSTTS
T ss_pred EEEECCCCcEeecC-CccccCCCCccceEECCCCCEEEEEeCCC----------CeEEEEECCCCcc
Confidence 999982 2232222 2222334457889999999955 444344 4999999999986
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-11 Score=109.51 Aligned_cols=207 Identities=9% Similarity=0.015 Sum_probs=150.3
Q ss_pred cccCCCCeEEeeCCCCeEEEeecC------CCeEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEE
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQ------DSIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKI 261 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~------ds~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKI 261 (411)
..-..|--+.|+....++.+.+.. ++.+.+||+.+.+.+..+.. ..+..+.++ ||..+++.....+ .|.+
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~--~v~~ 115 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNS--AVTA 115 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTT--EEEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCC--EEEE
Confidence 334567788999877777777765 78999999999999888873 478899999 7877777666554 6789
Q ss_pred EEecCCcEEeEeeeccccCC--------cceeeeeecce--eEEee--cCceeeEEEcccceEEEeeccccCCCceEEEE
Q 015220 262 LSIEDGTVLKSFNHLLHRNK--------KVDFIEQFNEK--LLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K--------~I~FLE~~~ek--llIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL 329 (411)
|++++|+++.++.. +... .+.-+..++++ +++.. .+..|.+||+.+++....-......|..+.+-
T Consensus 116 ~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 116 IDAKTGEVKGRLVL--DDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EETTTCCEEEEEES--CCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EeCCCCeeEEEEec--CCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 99999999988552 3222 14567887764 56665 36789999999999887333122235555544
Q ss_pred eec-eeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 330 YEN-QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 330 y~s-qlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
... .+|++-.++.|.+||+. |+++.++..... .+......+.++|||+.|+..+.+ .|+|.+||+.+|
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~~ 263 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDD-GKEHFFINISLDTARQRAFITDSK---------AAEVLVVDTRNG 263 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS-SSCCCEEEEEEETTTTEEEEEESS---------SSEEEEEETTTC
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-CCCcccceEEECCCCCEEEEEeCC---------CCEEEEEECCCC
Confidence 333 56666689999999998 888877664221 123367789999999987766543 369999999999
Q ss_pred eee
Q 015220 408 TCK 410 (411)
Q Consensus 408 k~~ 410 (411)
+++
T Consensus 264 ~~~ 266 (353)
T 3vgz_A 264 NIL 266 (353)
T ss_dssp CEE
T ss_pred cEE
Confidence 874
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8e-12 Score=120.05 Aligned_cols=175 Identities=14% Similarity=0.063 Sum_probs=131.7
Q ss_pred CeEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 215 SIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
+++++||+.+.. +..|. ...|..+++| ||..|+.........-|++|++.+|+... +..+...+..+..+++
T Consensus 159 ~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----l~~~~~~~~~~~~spd 233 (415)
T 2hqs_A 159 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPD 233 (415)
T ss_dssp EEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTT
T ss_pred ceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE----eecCCCcccCEEEcCC
Confidence 799999998644 44554 3389999999 89988888877667789999999999863 4566678889999988
Q ss_pred eeEEe---ec--CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEEe--cC--eEEEEecCCceeeeeccc
Q 015220 292 KLLVK---QE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTFR--NR--TVAVWNFRGELVTSFEDH 359 (411)
Q Consensus 292 kllIK---Qe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSfs--d~--tI~iWn~~Gel~~s~e~H 359 (411)
+-.|. +. +..|.+||+.+++.. ++..|+..+..+..+ +.+++.+ ++ .|.+||+.+.-++.+..|
T Consensus 234 g~~la~~~~~~g~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~ 309 (415)
T 2hqs_A 234 GSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE 309 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEE----ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS
T ss_pred CCEEEEEEecCCCceEEEEECCCCCEE----eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC
Confidence 75333 22 456999999999875 455677777777765 4344333 34 677779885445566666
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.. .+..+.+||||+.|++++.++ +.++|.+||+.||++.
T Consensus 310 ~~-----~~~~~~~spdG~~l~~~~~~~-------g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 310 GS-----QNQDADVSSDGKFMVMVSSNG-------GQQHIAKQDLATGGVQ 348 (415)
T ss_dssp SS-----EEEEEEECTTSSEEEEEEECS-------SCEEEEEEETTTCCEE
T ss_pred CC-----cccCeEECCCCCEEEEEECcC-------CceEEEEEECCCCCEE
Confidence 54 567899999999999998773 3569999999999864
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-11 Score=107.23 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=132.5
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEEec-cC---ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc--
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DK---NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-- 278 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iysLs-~~---~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~-- 278 (411)
..|+....++.+.+||+.+.+.+.++. ++ .+..+.+| ||..|++...... .|.+|++.+|+.+.++..--+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~--~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE--SLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTT--EEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCC--eEEEEECCCCCeEeeEEcCCccc
Confidence 467788889999999999999998887 34 58999999 7866666554433 488999999999987552110
Q ss_pred cCCcceeeeeecce--eEEee------------cCceeeEEEcccceEEEeeccccCCCceEEEEeece-eEEEEecCeE
Q 015220 279 RNKKVDFIEQFNEK--LLVKQ------------ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTFRNRTV 343 (411)
Q Consensus 279 h~K~I~FLE~~~ek--llIKQ------------e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sq-lFlSfsd~tI 343 (411)
+...+..+..++++ +++.+ .+..|.+||+.+++....-.. -..|..+.+-...+ +|++ ++.|
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence 12357778888765 45554 469999999999887653222 22344444332223 5555 8999
Q ss_pred EEEecC-Cceeeeecccc-----ccCCCC---------------------------------------------------
Q 015220 344 AVWNFR-GELVTSFEDHL-----LWHPDC--------------------------------------------------- 366 (411)
Q Consensus 344 ~iWn~~-Gel~~s~e~H~-----~~~~~c--------------------------------------------------- 366 (411)
.+||+. |+++..+..+. .|+|+-
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 999998 88887766544 122221
Q ss_pred -----ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 367 -----NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 367 -----~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
....+.+||||+.|+++ + |+|.+||+.+|+.+
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~----------~~v~~~d~~~~~~~ 273 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--Y----------NVLESFDLEKNASI 273 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--E----------SEEEEEETTTTEEE
T ss_pred CCCCCceeeEEECCCCCEEEEe--C----------CeEEEEECCCCcCc
Confidence 12347899999988877 3 49999999999864
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-11 Score=108.50 Aligned_cols=150 Identities=8% Similarity=0.091 Sum_probs=107.4
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC---ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~---~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
.+++.++....++.+.|||+.+.+.+.++... .+..+.+| ||..+++.....+ -|.+|++.||+.+..+. ++
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~--~i~~~d~~t~~~~~~~~--~~ 84 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG--DIYGIDLDTCKNTFHAN--LS 84 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT--EEEEEETTTTEEEEEEE--SC
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCC--cEEEEeCCCCcEEEEEE--cc
Confidence 47889999999999999999999999888744 58899999 7876666664444 47889999999988754 23
Q ss_pred c-----CCcceeeeeecce--eEEeecC------------ceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEE
Q 015220 279 R-----NKKVDFIEQFNEK--LLVKQEN------------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFL 336 (411)
Q Consensus 279 h-----~K~I~FLE~~~ek--llIKQe~------------~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFl 336 (411)
+ .+.+..+..++++ +++...+ ..|.+||+.+++..+.- ..+.+|..+..++.+ ++|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~l~~ 163 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV-RTFPMPRQVYLMRAADDGSLYV 163 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-EEEECCSSCCCEEECTTSCEEE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-eeccCCCcccceeECCCCcEEE
Confidence 3 3447788898875 4555543 89999999996543311 122344444434333 5554
Q ss_pred EEecCeEEEEecC-Cceeeeeccc
Q 015220 337 TFRNRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 337 Sfsd~tI~iWn~~-Gel~~s~e~H 359 (411)
.++.|.+||+. |+++.++..+
T Consensus 164 --~~~~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 164 --AGPDIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp --ESSSEEEECTTTCCEEEEECST
T ss_pred --ccCcEEEEeCCCCceecccccc
Confidence 35569999998 8888877644
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6e-11 Score=114.01 Aligned_cols=189 Identities=11% Similarity=0.064 Sum_probs=137.9
Q ss_pred EEeeCCCCeEEEeecCCC---eEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds---~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
+.| .++|+.|++...++ ++++||+.+.+......+ ..+..+++| ||..|++........-|.+|++.+|++. .
T Consensus 184 ~~~-Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~ 261 (415)
T 2hqs_A 184 PAW-SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-Q 261 (415)
T ss_dssp EEE-CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred eEE-cCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-e
Confidence 344 36899888888775 999999999887643322 378999999 8988887666666778999999999873 3
Q ss_pred eeeccccCCcceeeeeeccee--EEeec-Cc--eeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ec---
Q 015220 273 FNHLLHRNKKVDFIEQFNEKL--LVKQE-NE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RN--- 340 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekl--lIKQe-~~--~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd--- 340 (411)
+.+|...+..+..++++- +..+. +. .|.+||+.+++...+ ..+...+..+..+ +.+++. .+
T Consensus 262 ---l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l----~~~~~~~~~~~~spdG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 262 ---VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI----TWEGSQNQDADVSSDGKFMVMVSSNGGQ 334 (415)
T ss_dssp ---CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC----CCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred ---CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE----ecCCCcccCeEECCCCCEEEEEECcCCc
Confidence 567778888889888864 33443 22 677789999987653 3355566566655 333333 33
Q ss_pred CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 341 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 341 ~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.+|.+||+.+.-++.+..|. .+..+..||||+.|++++.+. +.++|.+||+.+++
T Consensus 335 ~~i~~~d~~~~~~~~l~~~~------~~~~~~~spdg~~l~~~s~~~-------~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 335 QHIAKQDLATGGVQVLSSTF------LDETPSLAPNGTMVIYSSSQG-------MGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEETTTCCEEECCCSS------SCEEEEECTTSSEEEEEEEET-------TEEEEEEEETTSCC
T ss_pred eEEEEEECCCCCEEEecCCC------CcCCeEEcCCCCEEEEEEcCC-------CccEEEEEECCCCc
Confidence 59999999944345676663 578899999999999999875 24589999987654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-10 Score=97.99 Aligned_cols=197 Identities=13% Similarity=0.145 Sum_probs=126.8
Q ss_pred cCCCCeEEeeCCCCe-EEEeecCCCeEEEEEee--Cc--eEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEe
Q 015220 192 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLK--NY--TMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 192 l~~PgfvEFDd~NGk-iLt~~~~ds~ykVWdL~--~Y--s~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I 264 (411)
...|..+.|+. +|+ +++.+..++.+++|++. +. +.+..+. ...+..+.+| ||..|++.....+ .|.+|++
T Consensus 37 ~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--~i~~~d~ 113 (343)
T 1ri6_A 37 PGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAG--NVSVTRL 113 (343)
T ss_dssp SSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTT--EEEEEEE
T ss_pred CCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCC--eEEEEEC
Confidence 34688899975 566 55545545999999998 43 3555555 3388999999 8887777765444 4799999
Q ss_pred cCC---cEEeEeeeccccCCcceeeeeecce--eEEee-cCceeeEEEccc-ceEEEee--ccccCCCceEEEEeec---
Q 015220 265 EDG---TVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRN-FELTEVS--RTEFMTPSAFIFLYEN--- 332 (411)
Q Consensus 265 ~tG---~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t-~e~~~v~--~T~f~hpsAfifLy~s--- 332 (411)
.+| +.+.. +.....+..+..++++ +++.. .+..|.+||+.+ ++...+. ............++.+
T Consensus 114 ~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 114 EDGLPVGVVDV----VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp ETTEEEEEEEE----ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred CCCcccccccc----ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 544 44444 3334568888898875 56666 789999999998 7665432 1111111222233333
Q ss_pred e-eEEEE-ecCeEEEEecC---Cce--eeeeccc-cccCCCCccceEEEcCCCCEEEE-EecCCCCCccccCCceEEEee
Q 015220 333 Q-LFLTF-RNRTVAVWNFR---GEL--VTSFEDH-LLWHPDCNTNNIYITSDQDLIIS-YCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 333 q-lFlSf-sd~tI~iWn~~---Gel--~~s~e~H-~~~~~~c~~n~i~Is~Dqd~iiS-~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+ +|++. .+++|.+|+++ |++ +..+... ..+........+.++|||+.|+. ...+ |+|.+||
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~----------~~i~v~d 259 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA----------SLITVFS 259 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT----------TEEEEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC----------CEEEEEE
Confidence 3 66676 78999999995 443 2222110 01112234557999999987764 4344 4999999
Q ss_pred ec
Q 015220 404 LM 405 (411)
Q Consensus 404 i~ 405 (411)
+.
T Consensus 260 ~~ 261 (343)
T 1ri6_A 260 VS 261 (343)
T ss_dssp EC
T ss_pred Ec
Confidence 98
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=99.20 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=137.0
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeC-ceEEEEecc---CceeEEEEe-CCEEEEEEecC-CCceeeEEEEecCCcEEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD---KNVQEIKIS-PGIMLLIFTKA-SGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iysLs~---~~VqeIkIS-dG~~Lai~q~t-~~~ipiKIl~I~tG~~L~ 271 (411)
+.|. ++|+.|++.. ++.+.+||+.+ .+....... ..|..+++| ||..|++.... ....-|.++++.+++. .
T Consensus 47 ~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~ 123 (297)
T 2ojh_A 47 PNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-R 123 (297)
T ss_dssp EEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-E
T ss_pred eEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-E
Confidence 4453 5788777765 78999999999 776655543 367889999 88887777643 3456666667777763 3
Q ss_pred EeeeccccCCcceeeeeeccee--E-EeecCceeeEEEc--ccceEEEeeccccCCCceEEEEeec---e-eEEEE-ecC
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKL--L-VKQENENLQILDV--RNFELTEVSRTEFMTPSAFIFLYEN---Q-LFLTF-RNR 341 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekl--l-IKQe~~~LkI~dL--~t~e~~~v~~T~f~hpsAfifLy~s---q-lFlSf-sd~ 341 (411)
. +.+..++..+..++++- + ....+..++||++ .+++... +..++..+..+..+ + ++++. .++
T Consensus 124 ~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 124 L----MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR----LTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp E----CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE----CCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred E----eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE----cccCCCccccceECCCCCEEEEEecCCC
Confidence 2 23334577788887764 3 3557788999985 4566554 34456666666654 3 44455 488
Q ss_pred eEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccc-cCCceEEEeeecceee
Q 015220 342 TVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA-EGNGKLFVSLLMFVTC 409 (411)
Q Consensus 342 tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~-~~~gtI~i~~i~tGk~ 409 (411)
++++|+++ +..++.+..|.. .+..+.++|||+.|+.++.+....... ...+.|.+||+.+|+.
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDSAY-----GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp SCEEEEEETTSSCEEECCCCSE-----EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CccEEEECCCCCCcEEEecCCc-----ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 99999986 777888888876 778899999999999988875222111 1337899999999875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=114.05 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=146.5
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce----------------EEEEecc-CceeEEEEe-CCEEEEEEe-cCCCce
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----------------MLYSISD-KNVQEIKIS-PGIMLLIFT-KASGHV 257 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys----------------~iysLs~-~~VqeIkIS-dG~~Lai~q-~t~~~i 257 (411)
.+.+...+|.+.+. ..++ ++||+..+.. ...++.. ..|..+..| ||.+|++.- -...--
T Consensus 41 ~lavs~~~~~l~~~-~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 41 LLAVSNKYGLVFAG-GASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp CEEEETTTTEEEEE-ETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred EEEEecCCCEEEEE-CCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 35566666665554 3344 8998865421 1122322 259999999 888888642 133445
Q ss_pred eeEEEEecCC--------cEEeEeeeccccCCcceeeeeecc-e--eEEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 258 PLKILSIEDG--------TVLKSFNHLLHRNKKVDFIEQFNE-K--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 258 piKIl~I~tG--------~~L~t~~~LL~h~K~I~FLE~~~e-k--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
-|+||++.++ +.+..+..+-+|..+|..++-+++ . +.....+..++|||+++++... +...|...+
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~---~~~~~~~~v 195 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC---ATLPSTVAV 195 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE---EEECGGGCE
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee---eccCCCCce
Confidence 6899999987 555555656789999999999986 3 3446789999999999996654 445588889
Q ss_pred EEEeec---eeEEEE-ecCeEEEEecCCceeeeeccccccCCC--CccceEEEcCCCCEEEEEecCCCCCccccCCceEE
Q 015220 327 IFLYEN---QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLF 400 (411)
Q Consensus 327 ifLy~s---qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~--c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~ 400 (411)
.+++.+ +.++++ .|++|.+||.+|+...++..|..++++ ..+..+.-++++.++++|+..+ +..+....+.
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d---g~~~~~~~v~ 272 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD---GTLETSPDVV 272 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT---CCSSSCCEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC---CccCCCCceE
Confidence 999877 667777 899999999999999998888765543 3677888889999999988764 1123335799
Q ss_pred Eeeecce
Q 015220 401 VSLLMFV 407 (411)
Q Consensus 401 i~~i~tG 407 (411)
+||+.+.
T Consensus 273 i~~l~~~ 279 (434)
T 2oit_A 273 MALLPKK 279 (434)
T ss_dssp EEECCCT
T ss_pred EEEeccC
Confidence 9999764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=129.48 Aligned_cols=149 Identities=9% Similarity=0.040 Sum_probs=116.3
Q ss_pred cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCC-----cceeeeeecceeEEee--cCceeeE
Q 015220 233 DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK-----KVDFIEQFNEKLLVKQ--ENENLQI 304 (411)
Q Consensus 233 ~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K-----~I~FLE~~~ekllIKQ--e~~~LkI 304 (411)
.+.|..++.| ||..||+...... ++||+.++ ++..+ .|.. .++.++.++|+.+|+. ++..|+|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~---V~iwd~~~--~l~~l----~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGN---VSVFKDNK--MLTNL----DSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSC---EEEEETTE--EEEEC----CCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCc---EEEEeCCc--eeeec----cCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 3479999999 9999998876655 89999655 55552 2444 5999999999986654 7899999
Q ss_pred EEcccceE-------EE-eeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCCce----eeee-ccccccCCCCcc
Q 015220 305 LDVRNFEL-------TE-VSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRGEL----VTSF-EDHLLWHPDCNT 368 (411)
Q Consensus 305 ~dL~t~e~-------~~-v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~Gel----~~s~-e~H~~~~~~c~~ 368 (411)
||+.+++. .. +....-+|..++..++.+ . ++++ .|++|++|++++.. .+++ ++|.. .+
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~-----~V 229 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR-----KI 229 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS-----CC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccC-----cE
Confidence 99999863 22 111225688999999877 7 6666 99999999999544 3468 58887 89
Q ss_pred ceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 369 NNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 369 n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
..|+.+ |+.|+|+| ++ +|++||+.+|++
T Consensus 230 ~svaFs--g~~LASa~-~~----------tIkLWd~~~~~~ 257 (588)
T 2j04_A 230 TDLKIV--DYKVVLTC-PG----------YVHKIDLKNYSI 257 (588)
T ss_dssp CCEEEE--TTEEEEEC-SS----------EEEEEETTTTEE
T ss_pred EEEEEE--CCEEEEEe-CC----------eEEEEECCCCeE
Confidence 999999 58888988 55 999999999987
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.8e-11 Score=119.13 Aligned_cols=190 Identities=9% Similarity=0.080 Sum_probs=133.2
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC-----ceeEEEEe-CCEEEEEEecCCC------ceeeEEEEecCCcEE
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----NVQEIKIS-PGIMLLIFTKASG------HVPLKILSIEDGTVL 270 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-----~VqeIkIS-dG~~Lai~q~t~~------~ipiKIl~I~tG~~L 270 (411)
++|+.+. ...++++++||+.+.+....+.++ .|..+++| ||..||+...... .--|.||++.+|+.+
T Consensus 25 ~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~ 103 (719)
T 1z68_A 25 SGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV 103 (719)
T ss_dssp SSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc
Confidence 5676554 456999999999999988777655 28999999 9998888765321 357999999999985
Q ss_pred eEeeeccccCCcceeeeeecceeEEe-ecCceeeEEEcccceEEEeeccccCCCc--------eE---------EEEeec
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPS--------AF---------IFLYEN 332 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hps--------Af---------ifLy~s 332 (411)
.+.. | ...+..+..++++-.|+ ..+.+|.+||+.+++...+. ..+++. ++ ..++.+
T Consensus 104 ~~~~--l--~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~--~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 104 RGNE--L--PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQIT--FNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp CSSC--C--CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECC--CCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred ccee--c--CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEe--cCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 3211 2 24688899999886333 35779999999999987753 222222 11 123333
Q ss_pred ---eeEEEEe-cC----------------------------------eEEEEecC-Ccee--------eeeccccccCCC
Q 015220 333 ---QLFLTFR-NR----------------------------------TVAVWNFR-GELV--------TSFEDHLLWHPD 365 (411)
Q Consensus 333 ---qlFlSfs-d~----------------------------------tI~iWn~~-Gel~--------~s~e~H~~~~~~ 365 (411)
+.+++.+ |. +|.+||+. |+.. .+|.+|..
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---- 253 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY---- 253 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE----
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc----
Confidence 4444442 21 88999999 5442 34556776
Q ss_pred CccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee----ecceeee
Q 015220 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL----LMFVTCK 410 (411)
Q Consensus 366 c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~----i~tGk~~ 410 (411)
.+..+..||||+++++..... ..+..|.+|| +.||++.
T Consensus 254 -~~~~~~~SpD~~~~~~~~~~~------~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 254 -YFSWLTWVTDERVCLQWLKRV------QNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp -EEEEEEESSSSEEEEEEEESS------TTEEEEEEEEECSSSSSEECC
T ss_pred -eEEEeEEeCCCeEEEEEeccc------cCeEEEEEEcccCCCCCCceE
Confidence 688999999999998866543 2336899999 8999874
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-08 Score=92.48 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=127.5
Q ss_pred CCCCeEEeeCCCCe-EEEeecCCCeEEEEEeeCceEEEEec------c----------CceeEEEEe-CCEEEEEEecCC
Q 015220 193 KWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS------D----------KNVQEIKIS-PGIMLLIFTKAS 254 (411)
Q Consensus 193 ~~PgfvEFDd~NGk-iLt~~~~ds~ykVWdL~~Ys~iysLs------~----------~~VqeIkIS-dG~~Lai~q~t~ 254 (411)
..|-++.+ +|+ +++.+..++++.||++.+-..+..+. + ..+..+.+| ||.+|++.....
T Consensus 100 ~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 176 (361)
T 3scy_A 100 ADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT 176 (361)
T ss_dssp SCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT
T ss_pred CCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC
Confidence 46788888 444 66666689999999998644332221 1 135779999 898777776555
Q ss_pred CceeeEEEEecCCc-------EEeE---eeeccccCCcceeeeeecce--eEEee-cCceeeEEEcccceEEEeec--cc
Q 015220 255 GHVPLKILSIEDGT-------VLKS---FNHLLHRNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRNFELTEVSR--TE 319 (411)
Q Consensus 255 ~~ipiKIl~I~tG~-------~L~t---~~~LL~h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t~e~~~v~~--T~ 319 (411)
+ -+.+|++..++ +... ....+.+...+.-+..++++ +++.. .++.|.+||+.+++...+.. +.
T Consensus 177 ~--~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~ 254 (361)
T 3scy_A 177 D--QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD 254 (361)
T ss_dssp T--EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC
T ss_pred C--EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC
Confidence 4 46788887544 2211 12234555566779999886 45555 58899999999887644321 11
Q ss_pred cCCCceEEEEeec----eeEEEEec--CeEEEEecC---Cc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 320 FMTPSAFIFLYEN----QLFLTFRN--RTVAVWNFR---GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 320 f~hpsAfifLy~s----qlFlSfsd--~tI~iWn~~---Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
-.+......++.+ .+|++.++ ++|.+|+++ |. ++.++.. . .....+.+||||+.|++++.+.
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g----~~~~~~~~spdg~~l~~~~~~~- 327 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--G----IHPRNFIITPNGKYLLVACRDT- 327 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--S----SCCCEEEECTTSCEEEEEETTT-
T ss_pred CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--C----CCCceEEECCCCCEEEEEECCC-
Confidence 1111222333333 46677754 899999995 56 3444443 2 2456899999999888887542
Q ss_pred CCccccCCceEEEe--eecceeee
Q 015220 389 DDPLAEGNGKLFVS--LLMFVTCK 410 (411)
Q Consensus 389 ~~~~~~~~gtI~i~--~i~tGk~~ 410 (411)
++|.+| |..||++.
T Consensus 328 --------~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 328 --------NVIQIFERDQATGLLT 343 (361)
T ss_dssp --------TEEEEEEECTTTCCEE
T ss_pred --------CCEEEEEEECCCCcEe
Confidence 489995 66688864
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-09 Score=95.45 Aligned_cols=203 Identities=12% Similarity=0.206 Sum_probs=129.1
Q ss_pred cccCCCCeEEeeCCCCeEEEeecC--CCeEEEEEeeCce--EEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEE
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYT--MLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~--ds~ykVWdL~~Ys--~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl 262 (411)
.....|.++.|+. +|++++.+.. ++.+.+||+.+.+ .+.++. ...+..+.+| ||.+|++.....+ -+.+|
T Consensus 37 ~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~--~v~v~ 113 (347)
T 3hfq_A 37 AATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKG--TAEVM 113 (347)
T ss_dssp EECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTT--EEEEE
T ss_pred eccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCC--EEEEE
Confidence 3457899999986 8885544432 6899999998766 555532 4588999999 8988888775443 47899
Q ss_pred Eec-CCcEEeEeeeccc--------cCCcceeeeeecceeEEee--cCceeeEEEcc-cceEEEeecccc---CCCceEE
Q 015220 263 SIE-DGTVLKSFNHLLH--------RNKKVDFIEQFNEKLLVKQ--ENENLQILDVR-NFELTEVSRTEF---MTPSAFI 327 (411)
Q Consensus 263 ~I~-tG~~L~t~~~LL~--------h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~-t~e~~~v~~T~f---~hpsAfi 327 (411)
++. +|+...-...... ....+..+..++++-++.. ++..+.+||+. +++...+..... ..|..+.
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 995 5553322111111 1124777899888754443 46789999999 677665332111 1233322
Q ss_pred EEeece-eEEEE-ecCeEEEEecC---Cce--eeeeccccc-cCCCCccceEEEcCCCCEE-EEEecCCCCCccccCCce
Q 015220 328 FLYENQ-LFLTF-RNRTVAVWNFR---GEL--VTSFEDHLL-WHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNGK 398 (411)
Q Consensus 328 fLy~sq-lFlSf-sd~tI~iWn~~---Gel--~~s~e~H~~-~~~~c~~n~i~Is~Dqd~i-iS~~~d~~~~~~~~~~gt 398 (411)
|-...+ +|++. .+++|.+|+++ |++ +..+..+.. +........+.+||||+.| ++...+. +
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~----------~ 263 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN----------T 263 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT----------E
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC----------E
Confidence 222224 67766 78899999998 443 223332211 1122356789999999977 5555444 9
Q ss_pred EEEeeec
Q 015220 399 LFVSLLM 405 (411)
Q Consensus 399 I~i~~i~ 405 (411)
|.+||+.
T Consensus 264 v~v~~~~ 270 (347)
T 3hfq_A 264 LAVFAVT 270 (347)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999996
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-09 Score=94.30 Aligned_cols=197 Identities=10% Similarity=0.246 Sum_probs=138.4
Q ss_pred ccCCCCeEEeeCCCCeEEEeecC-CCeEEEEEeeCceEEEEecc---CceeEEEEe-CCEEEEEEecCCCceeeEEEEec
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD---KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~-ds~ykVWdL~~Ys~iysLs~---~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
.+..|--+.||+.+|++++.... ++.+.+|| .+.+.+.++.. ..+..+.++ +|.+++. ....+ -|.+|+ .
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-~~~~~--~i~~~~-~ 149 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVV-ECKVM--RVIIFD-Q 149 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEE-ETTTT--EEEEEC-T
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEE-ECCCC--EEEEEc-C
Confidence 35678889999999999998864 88999999 66777777743 378899998 7875444 33333 467788 4
Q ss_pred CCcEEeEeeeccccCCcceeeeeecce-eEEe-ecCceeeEEEcccceEEEeecc-ccCCCceEEEEeeceeEEEE-ecC
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFNEK-LLVK-QENENLQILDVRNFELTEVSRT-EFMTPSAFIFLYENQLFLTF-RNR 341 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~ek-llIK-Qe~~~LkI~dL~t~e~~~v~~T-~f~hpsAfifLy~sqlFlSf-sd~ 341 (411)
+|+.+.++... ++...+.-|.+.+++ +++. ..++.|++||........+... .+..|..+.+-...++|++- .++
T Consensus 150 ~g~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 150 NGNVLHKFGCS-KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp TSCEEEEEECT-TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred CCCEEEEeCCC-CccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 78888775421 334557788888765 4555 3578999999854433333221 13345544333333788888 455
Q ss_pred -eEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 342 -TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 342 -tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.|.+|+..|+.++++..|... -....++++|||.++++ +.+. +|.+|++...
T Consensus 229 ~~i~~~~~~g~~~~~~~~~~~~---~~~~~i~~~~~g~l~vs-~~~~----------~v~v~~~~~~ 281 (286)
T 1q7f_A 229 FNLTIFTQDGQLISALESKVKH---AQCFDVALMDDGSVVLA-SKDY----------RLYIYRYVQL 281 (286)
T ss_dssp CEEEEECTTSCEEEEEEESSCC---SCEEEEEEETTTEEEEE-ETTT----------EEEEEECSCC
T ss_pred EEEEEECCCCCEEEEEcccCCC---CcceeEEECCCCcEEEE-CCCC----------eEEEEEcccc
Confidence 999999999999999877541 13458999999999998 5565 9999998654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.7e-09 Score=87.82 Aligned_cols=242 Identities=12% Similarity=0.019 Sum_probs=148.6
Q ss_pred ccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhh-CCCCCCCcceeecccC
Q 015220 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLK 193 (411)
Q Consensus 115 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~-gk~~~~~~LF~~~~l~ 193 (411)
|.-.+||..+++...+.. ....|.++-++....-|++.+ +. +.+..+ +.. |+. ..++....-.
T Consensus 22 ~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~----~~----~i~~~d---~~~~~~~---~~~~~~~~~~ 85 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS----EG----LLYRLS---LAGDPSP---EKVDTGFATI 85 (297)
T ss_dssp EEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE----TT----EEEEEE---SSSCCSC---EECCCTTCCC
T ss_pred eeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc----CC----eEEEEe---CCCCCCc---eEeccccccc
Confidence 344566666776665544 245677888887766555532 22 222222 222 221 1122211112
Q ss_pred CCCeEEeeCCCCeEEEeec--CCCeEEEEEeeC-ceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEE--ecC
Q 015220 194 WPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKN-YTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILS--IED 266 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~--~ds~ykVWdL~~-Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~--I~t 266 (411)
.+.-+.|. ++|+.|++.. .++..+||.+.. ......+.. ..+..+.+| ||..|++....... ++||. +.+
T Consensus 86 ~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~l~~~~~~~ 162 (297)
T 2ojh_A 86 CNNDHGIS-PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQV--FDIYSMDIDS 162 (297)
T ss_dssp BCSCCEEC-TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTE--EEEEEEETTT
T ss_pred cccceEEC-CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCc--eEEEEEECCC
Confidence 23345664 5788888777 446777777753 223455553 368888999 88877755555555 45555 556
Q ss_pred CcEEeEeeeccccCCcceeeeeeccee--EEee-cCceeeEEEcc-cceEEEeeccccCCCceEEEEeec---eeEEEE-
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQ-ENENLQILDVR-NFELTEVSRTEFMTPSAFIFLYEN---QLFLTF- 338 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQ-e~~~LkI~dL~-t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf- 338 (411)
++.. . +..+...+..+..++++- ++.. .+..++||++. +++... ++..|+..+..+..+ +.+++.
T Consensus 163 ~~~~-~---~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 163 GVET-R---LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE---RITDSAYGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp CCEE-E---CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE---ECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred Ccce-E---cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE---EEecCCcccCCeEECCCCCEEEEEE
Confidence 6653 3 556777888899988764 3344 47889999986 444333 444566666666655 333333
Q ss_pred ec-----------CeEEEEecC-Cce--eeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 339 RN-----------RTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 339 sd-----------~tI~iWn~~-Gel--~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.+ +.|.+||+. |++ +..+.+|.. .+..+..||||+.|++++.++
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-----TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-----TSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-----ccccceECCCCCEEEEEEecc
Confidence 43 579999999 554 445667776 677889999999999999886
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-10 Score=113.00 Aligned_cols=205 Identities=14% Similarity=0.033 Sum_probs=121.9
Q ss_pred hCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEecc-------------------Cce
Q 015220 177 RGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISD-------------------KNV 236 (411)
Q Consensus 177 ~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs~-------------------~~V 236 (411)
.|.+-.|..++.+..-..+.-+.+- |..+++...++ + +||+++.+.+ ..+.+ ..|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v 84 (706)
T 2z3z_A 10 HGSLMPGGKEFYNFYPEYVVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPS 84 (706)
T ss_dssp ------------------CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCC
T ss_pred cccccCCcccccccccccCCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCc
Confidence 3555566666666544432223333 44566666677 7 9999998874 44433 358
Q ss_pred eEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee-EEeecCceeeEEEccc-----
Q 015220 237 QEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRN----- 309 (411)
Q Consensus 237 qeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t----- 309 (411)
..+.+| |+.+++..+ --+.+|++.+|++... ..+...+..+..++++- ++-..+..|.+||+.+
T Consensus 85 ~~~~~spd~~~~~~~~-----~~i~~~d~~~~~~~~l----~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 85 FRTLDAGRGLVVLFTQ-----GGLVGFDMLARKVTYL----FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGM 155 (706)
T ss_dssp EEEEETTTTEEEEEET-----TEEEEEETTTTEEEEE----ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCC
T ss_pred eeEEECCCCeEEEEEC-----CEEEEEECCCCceEEc----cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccC
Confidence 999999 655555533 5789999999987553 45567788899998874 4445788999999999
Q ss_pred ceEEEeeccccCCC----------------ceEEEEeeceeEEEEe----------------------------------
Q 015220 310 FELTEVSRTEFMTP----------------SAFIFLYENQLFLTFR---------------------------------- 339 (411)
Q Consensus 310 ~e~~~v~~T~f~hp----------------sAfifLy~sqlFlSfs---------------------------------- 339 (411)
++...+ |...++ .++.|-.-.+.+++.+
T Consensus 156 g~~~~~--~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 156 SRAIAV--TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp CCCEES--CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred CCcEEe--ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 888774 333222 3333322223333332
Q ss_pred cCeEEEEecC-Cceeeeec--cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 340 NRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e--~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+.+|.+||+. |+...... .|.. .+..+..||||+.|++.+.+.. ...++|.+||+.||
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~~-----~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEK-----FLTNLSWSPDENILYVAEVNRA-----QNECKVNAYDAETG 294 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTC-----EEEEEEECTTSSEEEEEEECTT-----SCEEEEEEEETTTC
T ss_pred eeEEEEEECCCCceEeeccCCCCce-----eEeeEEEECCCCEEEEEEeCCC-----CCeeEEEEEECCCC
Confidence 3689999999 66444332 3333 6889999999999999887751 23479999999999
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-10 Score=113.93 Aligned_cols=198 Identities=10% Similarity=0.044 Sum_probs=138.4
Q ss_pred CCCeEEeeCCCCeEEEeecC-CC-----eEEEEEeeCceEEEEeccC--------------------------ceeEEEE
Q 015220 194 WPGFVEFDDVNGKVLTYSAQ-DS-----IYKVFDLKNYTMLYSISDK--------------------------NVQEIKI 241 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~-ds-----~ykVWdL~~Ys~iysLs~~--------------------------~VqeIkI 241 (411)
.|-.+.| .+||+.|++... ++ ++.+||+.+.+....+..+ .|..+.+
T Consensus 38 ~~~~~~~-SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKV-APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEE-CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCceE-ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 3445566 468998888877 77 9999999999877666542 2788999
Q ss_pred e-CCEEEEEEecCCCceeeEEEEecCCc--EEeEeeeccccCCcceeeeeecceeEE-eecCceeeEEEcccceEEEeec
Q 015220 242 S-PGIMLLIFTKASGHVPLKILSIEDGT--VLKSFNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSR 317 (411)
Q Consensus 242 S-dG~~Lai~q~t~~~ipiKIl~I~tG~--~L~t~~~LL~h~K~I~FLE~~~ekllI-KQe~~~LkI~dL~t~e~~~v~~ 317 (411)
| ||..|++... --|.+|++.+|+ .+.. +..+...+..+..++|+-.| -..+..|.+||+.+++...+..
T Consensus 117 SpDg~~l~~~~~----~~i~~~d~~~~~~~~~~~---l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 117 SPDAQRLLFPLG----GELYLYDLKQEGKAAVRQ---LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp CTTSSEEEEEET----TEEEEEESSSCSTTSCCB---CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred CCCCCEEEEEeC----CcEEEEECCCCCcceEEE---cccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence 9 9998888775 578899999993 3333 56777889999999998633 3345689999999999887532
Q ss_pred cccC-----C-----------CceEEEEeece-eEEEEecC---------------------------------eEEEEe
Q 015220 318 TEFM-----T-----------PSAFIFLYENQ-LFLTFRNR---------------------------------TVAVWN 347 (411)
Q Consensus 318 T~f~-----h-----------psAfifLy~sq-lFlSfsd~---------------------------------tI~iWn 347 (411)
.... + +.++.|=.-.+ |+++-.|+ +|.+||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2110 0 12222222223 33333443 788899
Q ss_pred cCC-ceeeeec---cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 348 FRG-ELVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~G-el~~s~e---~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.+ .-++.+. +|.. .+..+.. |||+.|+..+.+.. ...++|.+||+.||++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~-----~~~~~~~-pDg~~l~~~~~~~~-----~~~~~i~~~d~~~g~~~ 325 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDI-----YLARVNW-RDPQHLSFQRQSRD-----QKKLDLVEVTLASNQQR 325 (741)
T ss_dssp SSTTCCCEEECCCSCSSE-----EEEEEEE-EETTEEEEEEEETT-----SSEEEEEEEETTTCCEE
T ss_pred CCCCCceEEecCCCCcce-----EEEEEEe-CCCCEEEEEEeccc-----CCeEEEEEEECCCCceE
Confidence 886 4333332 3544 6788999 99999998887541 23479999999999874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-10 Score=108.07 Aligned_cols=186 Identities=11% Similarity=0.101 Sum_probs=121.6
Q ss_pred CCCCeEEEeecC-CCeEEEEEeeCceEEEEecc-C--ceeEEEEeCCEEEEEEec--CCCceeeEEEEe-cCCcEEeEee
Q 015220 202 DVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD-K--NVQEIKISPGIMLLIFTK--ASGHVPLKILSI-EDGTVLKSFN 274 (411)
Q Consensus 202 d~NGkiLt~~~~-ds~ykVWdL~~Ys~iysLs~-~--~VqeIkISdG~~Lai~q~--t~~~ipiKIl~I-~tG~~L~t~~ 274 (411)
.+||+.|++.+. +++++||++.+.+.. .|+. + .|..+..||..+|+.... .....-|-++++ .+|+.. .
T Consensus 30 ~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~-- 105 (582)
T 3o4h_A 30 VVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-R-- 105 (582)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-E--
T ss_pred CCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-c--
Confidence 368999998877 999999999776654 4553 3 688889996677776665 233333444444 134333 2
Q ss_pred eccccCCcceeeeeecce--eEEe-ecCceeeEEEcccceEEEeeccccCCCc-eEEEEeeceeEE-EEec----CeEEE
Q 015220 275 HLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVRNFELTEVSRTEFMTPS-AFIFLYENQLFL-TFRN----RTVAV 345 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hps-AfifLy~sqlFl-Sfsd----~tI~i 345 (411)
+ .....+.....++++ +++. .....+.|||+.+++...+.. +|. .+.|=.-.+.++ +-.+ ++|.+
T Consensus 106 -l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----~~~~~~~~spDG~~la~~~~~~~~~~~i~~ 179 (582)
T 3o4h_A 106 -L-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----LPGFGFVSDIRGDLIAGLGFFGGGRVSLFT 179 (582)
T ss_dssp -C-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE----ESSCEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred -c-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec----CCCceEEECCCCCEEEEEEEcCCCCeEEEE
Confidence 2 222234455666554 5444 455667799999999887532 222 222222224444 3355 68999
Q ss_pred EecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 346 WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 346 Wn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
||+.+.-++.+.+|.. .++.+..||||+.|+++..+ +..+|.+||+.||++.
T Consensus 180 ~d~~~g~~~~l~~~~~-----~~~~~~~SpDG~~l~~~~~~--------~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 180 SNLSSGGLRVFDSGEG-----SFSSASISPGMKVTAGLETA--------REARLVTVDPRDGSVE 231 (582)
T ss_dssp EETTTCCCEEECCSSC-----EEEEEEECTTSCEEEEEECS--------SCEEEEEECTTTCCEE
T ss_pred EcCCCCCceEeecCCC-----ccccceECCCCCEEEEccCC--------CeeEEEEEcCCCCcEE
Confidence 9998444568889887 67999999999999944332 2348999999999863
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.7e-11 Score=115.57 Aligned_cols=169 Identities=10% Similarity=0.070 Sum_probs=120.8
Q ss_pred CeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc----------EEeEee--eccccCC
Q 015220 215 SIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT----------VLKSFN--HLLHRNK 281 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~----------~L~t~~--~LL~h~K 281 (411)
+.+++|+--. .+.+..+.-+.+| ++-++++..... ++||+..+-. .+.++. ..+++..
T Consensus 23 ~~vri~~~~~-----~~~~~~~n~lavs~~~~~l~~~~~dg----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPE-----ELPKERSSLLAVSNKYGLVFAGGASG----LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCS-----SCCCSCCBCEEEETTTTEEEEEETTE----EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCcc-----ccCCCCccEEEEecCCCEEEEECCCE----EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 5677776421 1445567778888 444555554332 7787764211 111111 1245677
Q ss_pred cceeeeeecceeEEe----e--cCceeeEEEcccc--------eEEEeeccccCCCceEEEEeec----eeEEEE-ecCe
Q 015220 282 KVDFIEQFNEKLLVK----Q--ENENLQILDVRNF--------ELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRT 342 (411)
Q Consensus 282 ~I~FLE~~~ekllIK----Q--e~~~LkI~dL~t~--------e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~t 342 (411)
+|..++.++++.+++ + .+..++|||+.++ +......+.-+|...+..+..+ ++|+|. .|++
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 899999999887666 3 5789999999886 2222123566788999998865 578888 8999
Q ss_pred EEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 343 I~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|++||++ |..+....+|.. .+..+..+|||+.|++|+.|. +|.+||+. |+
T Consensus 174 v~iwD~~~~~~~~~~~~~~~-----~v~~v~wspdg~~lasgs~dg----------~v~iwd~~-~~ 224 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTV-----AVTSVCWSPKGKQLAVGKQNG----------TVVQYLPT-LQ 224 (434)
T ss_dssp EEEEEESSSEEEEEEECGGG-----CEEEEEECTTSSCEEEEETTS----------CEEEECTT-CC
T ss_pred EEEEEcCCCcceeeccCCCC-----ceeEEEEcCCCCEEEEEcCCC----------cEEEEccC-Cc
Confidence 9999999 777777788877 899999999999999999987 99999987 44
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-09 Score=91.95 Aligned_cols=200 Identities=12% Similarity=0.197 Sum_probs=138.7
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--------CceeEEEEe--CCEEEEEEecCCCceee
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KNVQEIKIS--PGIMLLIFTKASGHVPL 259 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--------~~VqeIkIS--dG~~Lai~q~t~~~ipi 259 (411)
..+..|--+-+| ++|++++....++.+.+||.. .+.+..+.. ..+..+.++ +|.+++...... --|
T Consensus 27 g~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~--~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT--HQI 102 (286)
T ss_dssp TCBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG--CEE
T ss_pred CccCCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC--CEE
Confidence 456789999998 468899988889999999987 566666642 378899994 777665543222 247
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeecce-eEEee-cCceeeEEEcccceEEEeec-cccCCCceEEEEeeceeEE
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK-LLVKQ-ENENLQILDVRNFELTEVSR-TEFMTPSAFIFLYENQLFL 336 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek-llIKQ-e~~~LkI~dL~t~e~~~v~~-T~f~hpsAfifLy~sqlFl 336 (411)
.+|+ .+|+.+.++. .++...+.-|.+.+++ +++.. .++.|.+||........+.. ..+..|..+.+-...++|+
T Consensus 103 ~~~d-~~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFG--ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEEC-TTSCEEEEEC--TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEEC-CCCcEEEEec--CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 8899 8899888753 2344566778887665 56654 56889999965433333322 2233455444433347888
Q ss_pred EE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 337 TF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 337 Sf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+- .++.|.+|+..|+.+.++..+-. .-....|++++||.++++.+.+. +.|.+||. +|+.
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~~g~---~~~p~~i~~d~~G~l~v~~~~~~---------~~i~~~~~-~g~~ 240 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGGEGI---TNYPIGVGINSNGEILIADNHNN---------FNLTIFTQ-DGQL 240 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESCTTT---SCSEEEEEECTTCCEEEEECSSS---------CEEEEECT-TSCE
T ss_pred EECCCCEEEEEcCCCCEEEEEccCCc---cCCCcEEEECCCCCEEEEeCCCC---------EEEEEECC-CCCE
Confidence 87 68899999999999888865421 12567899999999999976541 37888884 5554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-08 Score=90.40 Aligned_cols=182 Identities=9% Similarity=0.019 Sum_probs=117.3
Q ss_pred CCCeEEEEEee-CceEEEEec------cCceeEEEEe-CCEEEEEEecCCCceeeEEEEec-CCcEEeEeeeccc-cCCc
Q 015220 213 QDSIYKVFDLK-NYTMLYSIS------DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLH-RNKK 282 (411)
Q Consensus 213 ~ds~ykVWdL~-~Ys~iysLs------~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~-h~K~ 282 (411)
.+++++||++. +.+....+. ...+..+.+| ||..|++.+...+ -|.+|++. +|++......-++ +...
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~~g~~ 194 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN--KLWTHRKLASGEVELVGSVDAPDPGDH 194 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC--EEEEEEECCCCCEEEeeeEecCCCCCC
Confidence 68899999997 466554443 3489999999 8988887765444 57889999 8987532222222 3455
Q ss_pred ceeeeeecce--eEEeec-CceeeEEEcc--cceEEE----ee--ccc-cCCCc------eEEEEe-ec----eeEEEEe
Q 015220 283 VDFIEQFNEK--LLVKQE-NENLQILDVR--NFELTE----VS--RTE-FMTPS------AFIFLY-EN----QLFLTFR 339 (411)
Q Consensus 283 I~FLE~~~ek--llIKQe-~~~LkI~dL~--t~e~~~----v~--~T~-f~hps------AfifLy-~s----qlFlSfs 339 (411)
+.-+..++++ +++..+ ++.+.+|++. +|+... ++ +.. .+|.. ....++ .+ .+|++-+
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 7778999887 455554 6899999875 566431 21 111 12211 233334 33 4566654
Q ss_pred c-C-----eEEEEecC--Cceeee--eccccccCCCCccceEEEcC---CCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 340 N-R-----TVAVWNFR--GELVTS--FEDHLLWHPDCNTNNIYITS---DQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 340 d-~-----tI~iWn~~--Gel~~s--~e~H~~~~~~c~~n~i~Is~---Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+ + +|.+|+++ |++... +..+ +.+....+++|| ||+.|++++.+. |+|.||++.+
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~----~~~~~~~~a~sp~~~dg~~l~v~~~~~---------~~v~v~~~~~ 341 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPT----PTSGGHSNAVSPCPWSDEWMAITDDQE---------GWLEIYRWKD 341 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEEC----SSCCTTCCCEEECTTCTTEEEEECSSS---------CEEEEEEEET
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeec----CCCCcccceecCCCcCCCEEEEEEcCC---------CeEEEEEEch
Confidence 3 3 89999984 775542 1221 123567899999 899999887652 5999999876
Q ss_pred eee
Q 015220 407 VTC 409 (411)
Q Consensus 407 Gk~ 409 (411)
+.+
T Consensus 342 ~~l 344 (365)
T 1jof_A 342 EFL 344 (365)
T ss_dssp TEE
T ss_pred hhC
Confidence 543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-09 Score=107.97 Aligned_cols=261 Identities=8% Similarity=0.036 Sum_probs=160.9
Q ss_pred cceeeecccccEEEEEeCCCC-----------------------ceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 116 VCAAFCRETNQRICFLNVTAD-----------------------EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 116 ~c~af~~~t~~~ic~lN~s~~-----------------------evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
....+|..+|+..-.+..... .-|.++-++...+.|++++- ..+ +..
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~------~~i--~~~-- 134 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG------GEL--YLY-- 134 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET------TEE--EEE--
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC------CcE--EEE--
Confidence 566777777776666543211 23667778888888877553 122 222
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc-----------------
Q 015220 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN----------------- 235 (411)
Q Consensus 173 ~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~----------------- 235 (411)
++..|.-..-..|... -..+..+.|. ++|+.|++... +.+.+||+.+.+......+..
T Consensus 135 -d~~~~~~~~~~~l~~~--~~~~~~~~~S-PDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~ 209 (741)
T 2ecf_A 135 -DLKQEGKAAVRQLTHG--EGFATDAKLS-PKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMD 209 (741)
T ss_dssp -ESSSCSTTSCCBCCCS--SSCEEEEEEC-TTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSC
T ss_pred -ECCCCCcceEEEcccC--CcccccccCC-CCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccc
Confidence 2222200001122211 1123345565 68998888764 589999999987765444331
Q ss_pred -eeEEEEe-CCEEEEEEecCC------------------------------CceeeEEEEecC-CcEEeEeeecc--ccC
Q 015220 236 -VQEIKIS-PGIMLLIFTKAS------------------------------GHVPLKILSIED-GTVLKSFNHLL--HRN 280 (411)
Q Consensus 236 -VqeIkIS-dG~~Lai~q~t~------------------------------~~ipiKIl~I~t-G~~L~t~~~LL--~h~ 280 (411)
+..+..| ||..|++..... ...-|.+|++.+ |+.... .+ .+.
T Consensus 210 ~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~---~~~~~~~ 286 (741)
T 2ecf_A 210 RHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI---DLGKEQD 286 (741)
T ss_dssp CCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE---CCCSCSS
T ss_pred cccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe---cCCCCcc
Confidence 4789999 898888775432 345788999999 986553 22 356
Q ss_pred CcceeeeeecceeEEe-------ecCceeeEEEcccceEEEeeccccC----CCceEEEEeeceeEEEE-ecCeEEEEec
Q 015220 281 KKVDFIEQFNEKLLVK-------QENENLQILDVRNFELTEVSRTEFM----TPSAFIFLYENQLFLTF-RNRTVAVWNF 348 (411)
Q Consensus 281 K~I~FLE~~~ekllIK-------Qe~~~LkI~dL~t~e~~~v~~T~f~----hpsAfifLy~sqlFlSf-sd~tI~iWn~ 348 (411)
..+..+.. +++-.|. +.+..|.+||+.+++...+...... ....+.|..-.+++++. .+++++||..
T Consensus 287 ~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 365 (741)
T 2ecf_A 287 IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRI 365 (741)
T ss_dssp EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEE
T ss_pred eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEE
Confidence 66777777 7655333 2357899999999998775332210 11233343334565555 7777888866
Q ss_pred C--CceeeeeccccccCCCCccceE-EEcCCCCEEEEEecCCCCCccccCCceEEEeeecc-ee
Q 015220 349 R--GELVTSFEDHLLWHPDCNTNNI-YITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF-VT 408 (411)
Q Consensus 349 ~--Gel~~s~e~H~~~~~~c~~n~i-~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t-Gk 408 (411)
+ |. ++.+..|.. .+..+ .+||||+.|+..+.++ +.++++||++.+ |+
T Consensus 366 ~~~~~-~~~l~~~~~-----~v~~~~~~s~dg~~l~~~~~~~-------~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 366 DSKGK-AAALTHGNW-----SVDELLAVDEKAGLAYFRAGIE-------SARESQIYAVPLQGG 416 (741)
T ss_dssp CSSSC-EEESCCSSS-----CEEEEEEEETTTTEEEEEECSS-------CTTCBEEEEEETTCC
T ss_pred cCCCC-eeeeeecce-----EEEeEeEEeCCCCEEEEEEeCC-------CCceEEEEEEEcCCC
Confidence 5 77 888888855 56666 5999999775444432 234789999875 54
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-09 Score=96.08 Aligned_cols=181 Identities=9% Similarity=0.047 Sum_probs=132.0
Q ss_pred CeEEEeecCCCeEEEEEeeCceEEEEeccC---ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~Ys~iysLs~~---~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
|++|+....++.+.+||.++.+.+.++..+ ++..+.++ +|.+|+.. .+ -+..|+. +|++++++.. +..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~---~~--~V~~~d~-~G~~~W~~~~--~~~ 76 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSY---SK--GAKMITR-DGRELWNIAA--PAG 76 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEEC---BS--EEEEECT-TSCEEEEEEC--CTT
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeC---CC--CEEEECC-CCCEEEEEcC--CCC
Confidence 688999999999999999999999888864 58889998 88877732 22 3889999 9999999763 444
Q ss_pred CcceeeeeecceeEEee--c-CceeeEEEcccceEE-Eeec--c---ccCCCceEEEEeeceeEEEE-ecCeEEEEecCC
Q 015220 281 KKVDFIEQFNEKLLVKQ--E-NENLQILDVRNFELT-EVSR--T---EFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQ--e-~~~LkI~dL~t~e~~-~v~~--T---~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~G 350 (411)
.++.-....+++.++-. + +..+..+|- +|+.. +... . .+..|..+..+...+++++. .+++|..||+.|
T Consensus 77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 77 CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 56766676666654433 3 567777776 56543 3321 1 11123333344445778877 789999999999
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++.++..+. ....+...++|+++|+++.+. .|..+|..|||.+
T Consensus 156 ~~~w~~~~~~------~~~~~~~~~~g~~~v~~~~~~----------~v~~~d~~tG~~~ 199 (276)
T 3no2_A 156 QLLNSVKLSG------TPFSSAFLDNGDCLVACGDAH----------CFVQLNLESNRIV 199 (276)
T ss_dssp CEEEEEECSS------CCCEEEECTTSCEEEECBTTS----------EEEEECTTTCCEE
T ss_pred CEEEEEECCC------CccceeEcCCCCEEEEeCCCC----------eEEEEeCcCCcEE
Confidence 9999998752 233578899999999887664 8888998888864
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-09 Score=96.68 Aligned_cols=198 Identities=15% Similarity=0.202 Sum_probs=139.1
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce-EEEEecc---------C--ceeEEEEeC--CEEEEEEecCCC
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD---------K--NVQEIKISP--GIMLLIFTKASG 255 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-~iysLs~---------~--~VqeIkISd--G~~Lai~q~t~~ 255 (411)
..+..|-.+-|| ++|++++....++.+++||..+-. .+.++.. + ....|.+++ |.+++.....++
T Consensus 88 ~~~~~p~gia~d-~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSID-TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEEC-TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CccCCceEEEEC-CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 446689999999 789999999999999999987643 6677631 1 678899994 665544432333
Q ss_pred ceeeEEEEecCCcEEeEeeec-------cccCCcceeeeeecc--eeEEee-cCceeeEEEcccceEEEeec-ccc-CCC
Q 015220 256 HVPLKILSIEDGTVLKSFNHL-------LHRNKKVDFIEQFNE--KLLVKQ-ENENLQILDVRNFELTEVSR-TEF-MTP 323 (411)
Q Consensus 256 ~ipiKIl~I~tG~~L~t~~~L-------L~h~K~I~FLE~~~e--kllIKQ-e~~~LkI~dL~t~e~~~v~~-T~f-~hp 323 (411)
-|.+|+ .+|+.+.++... -++-..+.-|.+.++ .+++.. +++.|++||..+|+....-. ..+ ..|
T Consensus 167 --~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~ 243 (329)
T 3fvz_A 167 --RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNV 243 (329)
T ss_dssp --EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCE
T ss_pred --eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCc
Confidence 477889 899998875421 012233677888875 566664 67889999999888776211 111 112
Q ss_pred c------eEEEEeeceeEEEE-ecCeEEEEecC-Cceeeeec---cccccCCCCccceEEEcCCCCEEEEEecCCCCCcc
Q 015220 324 S------AFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (411)
Q Consensus 324 s------AfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e---~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~ 392 (411)
. .+++....+++++- .+.+|.+|++. |+++.++. +|.. ....|+++|||.++|+.+.+.
T Consensus 244 ~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-----~p~~ia~~~dG~lyvad~~~~----- 313 (329)
T 3fvz_A 244 FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-----MPHDIVASEDGTVYIGDAHTN----- 313 (329)
T ss_dssp EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-----SEEEEEECTTSEEEEEESSSC-----
T ss_pred ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-----CeeEEEECCCCCEEEEECCCC-----
Confidence 2 23333333455554 45599999987 99999984 5655 678999999999999988776
Q ss_pred ccCCceEEEeeecc
Q 015220 393 AEGNGKLFVSLLMF 406 (411)
Q Consensus 393 ~~~~gtI~i~~i~t 406 (411)
+|.+|++..
T Consensus 314 -----~I~~~~~~~ 322 (329)
T 3fvz_A 314 -----TVWKFTLTE 322 (329)
T ss_dssp -----CEEEEEEEE
T ss_pred -----EEEEEeCCc
Confidence 999999853
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.2e-08 Score=88.53 Aligned_cols=239 Identities=12% Similarity=0.170 Sum_probs=140.5
Q ss_pred eEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCC----CeEEEEEeeC-
Q 015220 150 SLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKN- 224 (411)
Q Consensus 150 slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~d----s~ykVWdL~~- 224 (411)
..+.|..|.+..=..+....++. ..|++ .++-.. ....|.++.|+. +|+.|.....+ +.+.+|++.+
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~---~~g~~---~~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~ 85 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNE---ETGES---LPLSDA-EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKE 85 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEET---TTCCE---EEEEEE-ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETT
T ss_pred eEEEEEeccCCCCCCEEEEEEeC---CCCCE---EEeecc-cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCC
Confidence 45566666554323444444321 11221 122222 678899999975 67766555543 7999999987
Q ss_pred -c--eEEEEec--cCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc-----------CCcceeeee
Q 015220 225 -Y--TMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR-----------NKKVDFIEQ 288 (411)
Q Consensus 225 -Y--s~iysLs--~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h-----------~K~I~FLE~ 288 (411)
. +.+.++. ......+.+ ||.+|++.....+ .+.+|++.++..+......+.+ ...+..+..
T Consensus 86 ~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (361)
T 3scy_A 86 KGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGG--SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI 162 (361)
T ss_dssp TTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTT--EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE
T ss_pred CCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCC--EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE
Confidence 3 3555554 346777777 8888888765443 4789999865555432211111 122466888
Q ss_pred ecce--eEEee-cCceeeEEEcccce-------EE------EeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-
Q 015220 289 FNEK--LLVKQ-ENENLQILDVRNFE-------LT------EVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 289 ~~ek--llIKQ-e~~~LkI~dL~t~e-------~~------~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~- 349 (411)
++++ +++.. ++..+.+|++.... +. .........|..+.|-... .+|++- .+++|.+|+++
T Consensus 163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 8887 44544 47899999988543 21 1111222334433332222 466666 68999999998
Q ss_pred Cce--eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec--ceee
Q 015220 350 GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM--FVTC 409 (411)
Q Consensus 350 Gel--~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~--tGk~ 409 (411)
|.+ +.++..+.. ..-....+.+||||+.|+..+.+ +.++|.+|++. +|++
T Consensus 243 g~~~~~~~~~~~~~--~~~~~~~i~~spdg~~l~v~~~~--------~~~~i~v~~~~~~~g~~ 296 (361)
T 3scy_A 243 GMLDEIQTVAADTV--NAQGSGDIHLSPDGKYLYASNRL--------KADGVAIFKVDETNGTL 296 (361)
T ss_dssp TEEEEEEEEESCSS--CCCCEEEEEECTTSSEEEEEECS--------SSCEEEEEEECTTTCCE
T ss_pred CceEEeEEEecCCC--CCCCcccEEECCCCCEEEEECCC--------CCCEEEEEEEcCCCCcE
Confidence 654 223222111 00134689999999988655544 02499999994 6764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-08 Score=102.49 Aligned_cols=194 Identities=10% Similarity=0.004 Sum_probs=130.8
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecC----
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIED---- 266 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t---- 266 (411)
..+..+.|..- ++++.. .++++++||+.+.+....... ..+..+++| ||..|++... -.|.+|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~----~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRN----HNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEET----TEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEEC----CeEEEEecCccccc
Confidence 44667888755 776665 459999999999887655443 478999999 8988887532 3689999999
Q ss_pred -CcEEeEeeeccccCCc--------------ceeeeeecceeEEe--e--------------------------------
Q 015220 267 -GTVLKSFNHLLHRNKK--------------VDFIEQFNEKLLVK--Q-------------------------------- 297 (411)
Q Consensus 267 -G~~L~t~~~LL~h~K~--------------I~FLE~~~ekllIK--Q-------------------------------- 297 (411)
|+....+ ..+... +..+..++|+-.|. +
T Consensus 155 ~g~~~~~~---~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 155 MSRAIAVT---IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCCCEESC---SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred CCCcEEec---cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 8876531 222222 47788888875443 3
Q ss_pred -cCceeeEEEcccceEEEeeccccCCCceEEEEeec---e-eEEEEecC-----eEEEEecC-Cceeeeec--cccccCC
Q 015220 298 -ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---Q-LFLTFRNR-----TVAVWNFR-GELVTSFE--DHLLWHP 364 (411)
Q Consensus 298 -e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---q-lFlSfsd~-----tI~iWn~~-Gel~~s~e--~H~~~~~ 364 (411)
....|.+||+.+++...+... ..|...+..+..+ + ++++..++ +|.+||+. |+.++.+. .+..|..
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTG-EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCC-SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred CCeeEEEEEECCCCceEeeccC-CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 336799999999998764321 1344555556554 3 44444565 99999999 73444332 3333311
Q ss_pred CCccceEEEcC--CCCEEEEEecCCCCCccccCCceEEEeeec-ceee
Q 015220 365 DCNTNNIYITS--DQDLIISYCKADSDDPLAEGNGKLFVSLLM-FVTC 409 (411)
Q Consensus 365 ~c~~n~i~Is~--Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~-tGk~ 409 (411)
..+.+..|| ||++|++++.|. +++||++. +|+.
T Consensus 311 --~~~~~~~sp~~dg~~l~~~~~~g----------~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 311 --PLHPLTFLPGSNNQFIWQSRRDG----------WNHLYLYDTTGRL 346 (706)
T ss_dssp --CCSCCEECTTCSSEEEEEECTTS----------SCEEEEEETTSCE
T ss_pred --ccCCceeecCCCCEEEEEEccCC----------ccEEEEEECCCCE
Confidence 246789999 999999887664 78888876 5553
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-09 Score=107.60 Aligned_cols=210 Identities=9% Similarity=0.048 Sum_probs=141.2
Q ss_pred EeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc-----e--eEEE
Q 015220 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-----V--QEIK 240 (411)
Q Consensus 168 r~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~-----V--qeIk 240 (411)
+.++.+++..|..... .| .+. |- ++|+.+++. ++++++||+++.+....++.+. + .++.
T Consensus 3 ~~~tl~~~~~~~~~~~--~~---~~~------w~-~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 3 KTYTLTDYLKNTYRLK--LY---SLR------WI-SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp EECCHHHHHHTCSCCC--CC---CEE------EC-SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE
T ss_pred CceeHHHHhcCccccc--cc---ccE------EC-CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceE
Confidence 4567889988865321 11 222 22 567877775 8999999999999877777653 2 3478
Q ss_pred Ee-CCEEEEEEecCCC------ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee-cCceeeEEEcccceE
Q 015220 241 IS-PGIMLLIFTKASG------HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFEL 312 (411)
Q Consensus 241 IS-dG~~Lai~q~t~~------~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ-e~~~LkI~dL~t~e~ 312 (411)
+| ||..|++...... .-.+.||+++||++.. +..+...+.....++|+..|+- .+++|.+||+.+++.
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS 144 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Confidence 89 9998888876432 2567899999998653 5566778999999999874443 578999999999998
Q ss_pred EEeeccccCCCceEE-----------------EEeec---e-e-EEEEecC-----------------------------
Q 015220 313 TEVSRTEFMTPSAFI-----------------FLYEN---Q-L-FLTFRNR----------------------------- 341 (411)
Q Consensus 313 ~~v~~T~f~hpsAfi-----------------fLy~s---q-l-FlSfsd~----------------------------- 341 (411)
.++ |..+++.... .+.-| + | |.++.++
T Consensus 145 ~~l--t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 145 YRI--TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG 222 (740)
T ss_dssp EEC--CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred EEE--cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence 876 3322222110 01112 1 1 1111111
Q ss_pred ------eEEEEecCC---c---eeeeec------cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 342 ------TVAVWNFRG---E---LVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 342 ------tI~iWn~~G---e---l~~s~e------~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+|.+||+.+ . -.+.+. +|.. .+..+.-||||++++...+.. ....+|.+||
T Consensus 223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~wspdg~~~~~~~~r~------~~~~~i~~~d 291 (740)
T 4a5s_A 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-----YLCDVTWATQERISLQWLRRI------QNYSVMDICD 291 (740)
T ss_dssp SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-----EEEEEEEEETTEEEEEEEESS------TTEEEEEEEE
T ss_pred CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-----EEEEEEEeCCCeEEEEEeCCC------CCEEEEEEEE
Confidence 578888886 3 233343 2555 677889999999888877654 2236899999
Q ss_pred eccee
Q 015220 404 LMFVT 408 (411)
Q Consensus 404 i~tGk 408 (411)
+.||+
T Consensus 292 ~~tg~ 296 (740)
T 4a5s_A 292 YDESS 296 (740)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 99998
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.04 E-value=5e-08 Score=90.61 Aligned_cols=184 Identities=10% Similarity=0.129 Sum_probs=136.8
Q ss_pred CCCeEEEEEeeCceEEEEec--------cCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcce
Q 015220 213 QDSIYKVFDLKNYTMLYSIS--------DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (411)
Q Consensus 213 ~ds~ykVWdL~~Ys~iysLs--------~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~ 284 (411)
.++++.+||.++.+....+. ....+.+.+.++.+.+..... --|.+||..||++++++. ....+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~---~~v~viD~~t~~~~~~i~----~~~~p~ 87 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNS---HVIFAIDINTFKEVGRIT----GFTSPR 87 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGG---TEEEEEETTTCCEEEEEE----CCSSEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCC---CEEEEEECcccEEEEEcC----CCCCCc
Confidence 38999999999999887662 246788999888766665532 358889999999999963 335677
Q ss_pred eeee-ecceeEEee-cCceeeEEEcccceEEE-eeccc----cCCCceEEEEeeceeEEEEe--cCeEEEEecC-Cceee
Q 015220 285 FIEQ-FNEKLLVKQ-ENENLQILDVRNFELTE-VSRTE----FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVT 354 (411)
Q Consensus 285 FLE~-~~ekllIKQ-e~~~LkI~dL~t~e~~~-v~~T~----f~hpsAfifLy~sqlFlSfs--d~tI~iWn~~-Gel~~ 354 (411)
.|.. ..+++++.. .++.|.+||+.+++... ++-.. ...|..+.+ ...++|++-. +++|.+||+. |+++.
T Consensus 88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 7888 556677777 78999999999998764 32111 126777655 6678899873 8899999999 88888
Q ss_pred eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++.-. . ..+.+++++||++.++...+.....+....++|.++|..||++.
T Consensus 167 ~i~~g--~----~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 167 ELTIG--I----QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp EEECS--S----CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred EEEcC--C----CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence 77542 1 34689999999998887665433334334589999999999864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-08 Score=109.06 Aligned_cols=190 Identities=9% Similarity=0.046 Sum_probs=138.7
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-------------ceeEEEEe--CCEEEEEEecCCCceeeEEEE
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------------NVQEIKIS--PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-------------~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~ 263 (411)
.|. ++|+.|++. .++.+.+||+.+ ..+..+..+ .+..+.+| ||..|++.. .--+.+|+
T Consensus 251 ~~S-pDG~~la~~-~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~~~i~~~~ 323 (1045)
T 1k32_A 251 HLN-TDGRRILFS-KGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----RGQAFIQD 323 (1045)
T ss_dssp EEE-ESSSCEEEE-ETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----TTEEEEEC
T ss_pred eEc-CCCCEEEEE-eCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE----cCEEEEEc
Confidence 555 688888776 588999999954 445577764 58999998 788777776 34688999
Q ss_pred ecCCcEEeEeeeccccCC-cceeeeeecce--eEEeecCceee-EEEcccceEEEeeccccCCCceEEEEeec---eeEE
Q 015220 264 IEDGTVLKSFNHLLHRNK-KVDFIEQFNEK--LLVKQENENLQ-ILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFL 336 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K-~I~FLE~~~ek--llIKQe~~~Lk-I~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFl 336 (411)
+.+|+... +..+.. .+..+..+ ++ ++..++...|. +||+.+++...+ + .|...+..++.+ +.++
T Consensus 324 ~~~~~~~~----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l--~--~~~~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 324 VSGTYVLK----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF--E--ENLGNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp TTSSBEEE----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC--C--CCCCSEEEEEECTTSSEEE
T ss_pred CCCCceEE----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe--c--CCccceeeeEECCCCCEEE
Confidence 99998654 344545 66666666 44 45566677788 889999887764 2 566777777766 4444
Q ss_pred EE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 337 TF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 337 Sf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+. .+++|.+||+. |++...+++|.. .+..+..||||+.|++++.+..........++|.+||+.+|+.
T Consensus 395 ~~~~~~~v~~~d~~tg~~~~~~~~~~~-----~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred EECCCCeEEEEECCCCceEEeccCCCC-----CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence 44 66799999998 888888888887 6788999999999988877530000112347999999999984
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.01 E-value=9.1e-09 Score=101.18 Aligned_cols=260 Identities=12% Similarity=0.083 Sum_probs=160.8
Q ss_pred eehhhhc-cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeE-ecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 107 IVFALAQ-SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVY-ASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 107 ii~~L~~-sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~-~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
.|+.... .|....|+..+++..... ..+..-++++.+... .+++++.. ..+. ..+-..++.. ..|+ ..
T Consensus 35 ~la~~s~~~g~~~lw~~~~g~~~~lt-~~~~~~~~~~~~spd--~~l~~~~~~~g~~--~~~l~~~~~~--~~g~---~~ 104 (582)
T 3o4h_A 35 KLLVVGFSEGSVNAYLYDGGETVKLN-REPINSVLDPHYGVG--RVILVRDVSKGAE--QHALFKVNTS--RPGE---EQ 104 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEECC-SSCCSEECEECTTCS--EEEEEEECSTTSC--CEEEEEEETT--STTC---CE
T ss_pred eEEEEEccCCceeEEEEcCCCcEeee-cccccccccccCCCC--eEEEEeccCCCCc--ceEEEEEecc--CCCc---cc
Confidence 3443433 788888887666654433 333357888888853 55554422 1222 1222222220 0111 11
Q ss_pred cceeecccCCCCeEEee-CCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEe-cCCCceeeEE
Q 015220 185 ALFESESLKWPGFVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFT-KASGHVPLKI 261 (411)
Q Consensus 185 ~LF~~~~l~~PgfvEFD-d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q-~t~~~ipiKI 261 (411)
.|....... ..-|- |.++.++++...++.. +||+.+.++.....+.. .++.+| ||..|+... ...+..-|.+
T Consensus 105 ~l~~~~~~~---~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~ 179 (582)
T 3o4h_A 105 RLEAVKPMR---ILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFT 179 (582)
T ss_dssp ECTTSCSBE---EEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred cccCCCCce---eeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEE
Confidence 121111111 22332 2355677766666666 99999987655444444 889999 999888544 3344456999
Q ss_pred EEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCc--eeeEEEcccceEEEeeccccCCCceE---E-------
Q 015220 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENE--NLQILDVRNFELTEVSRTEFMTPSAF---I------- 327 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~--~LkI~dL~t~e~~~v~~T~f~hpsAf---i------- 327 (411)
|++.+|+.. . |.++...+..+..++|+-.|.. .+. .|.+||+.+++... . ..|...+ .
T Consensus 180 ~d~~~g~~~-~---l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 180 SNLSSGGLR-V---FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVED-L---ELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EETTTCCCE-E---ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEE-C---CCSCSHHHHHCCSEEEEE
T ss_pred EcCCCCCce-E---eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEE-c---cCCCcChhhhhhccccce
Confidence 999999975 3 5678888899999999875543 333 79999999999873 1 1232222 2
Q ss_pred -EEeeceeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 328 -FLYENQLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 328 -fLy~sqlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|-...+++++. .++++++|+. |++++++.+ .+..+..| ||.++++++.+. ..+.|.+||..
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~~~--------~v~~~~~s-dg~~l~~~s~~~-------~p~~l~~~d~~ 314 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID-GERVEAPQG--------NHGRVVLW-RGKLVTSHTSLS-------TPPRIVSLPSG 314 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET-TEEECCCSS--------EEEEEEEE-TTEEEEEEEETT-------EEEEEEEETTC
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE-CCeeccCCC--------ceEEEEec-CCEEEEEEcCCC-------CCCeEEEEcCC
Confidence 22222677777 8899999999 988764432 45688999 999999999885 12456677655
Q ss_pred c
Q 015220 406 F 406 (411)
Q Consensus 406 t 406 (411)
+
T Consensus 315 ~ 315 (582)
T 3o4h_A 315 E 315 (582)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-08 Score=98.45 Aligned_cols=274 Identities=12% Similarity=0.038 Sum_probs=165.2
Q ss_pred hccccceeeecccccEEEEEeCCCCc--eEEEEEeecCCCeEEEEEeEecCC----CceeeeEeeehhhhhhCCCCCCCc
Q 015220 112 AQSGVCAAFCRETNQRICFLNVTADE--VIRSLFYNKNNDSLITVSVYASDN----FSSLRCRSTRIEYIRRGKPDAGFA 185 (411)
Q Consensus 112 ~~sG~c~af~~~t~~~ic~lN~s~~e--vIrsifyN~~n~slI~vSv~~sd~----~s~L~cr~~~~~~i~~gk~~~~~~ 185 (411)
...|....+|..||+..-.+...... -|.++-++...+.|.+++...... ...+. +-++..|+. .+
T Consensus 34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~-----~~d~~~~~~---~~ 105 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV-----LSKIPHGDP---QS 105 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE-----EEESSSCCC---EE
T ss_pred eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE-----EEECCCCce---Ee
Confidence 56788889999999987777654332 378888999888887754321100 01111 122333321 11
Q ss_pred ceeec-ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--Cce------------------eEEEEe-C
Q 015220 186 LFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNV------------------QEIKIS-P 243 (411)
Q Consensus 186 LF~~~-~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~V------------------qeIkIS-d 243 (411)
|-... .-.++..+.| .+||+.|++... +.+.+||+.+.+......+ ..+ ..+..| |
T Consensus 106 l~~~~~~~~~~~~~~~-SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD 183 (723)
T 1xfd_A 106 LDPPEVSNAKLQYAGW-GPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD 183 (723)
T ss_dssp CCCTTCCSCCCSBCCB-CSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT
T ss_pred ccCCccccccccccEE-CCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC
Confidence 11111 0001223334 468988888776 7899999999887655543 233 689999 8
Q ss_pred CEEEEEEecCC-------------------------------CceeeEEEEecCCcEEeEeee---ccccCCcceeeeee
Q 015220 244 GIMLLIFTKAS-------------------------------GHVPLKILSIEDGTVLKSFNH---LLHRNKKVDFIEQF 289 (411)
Q Consensus 244 G~~Lai~q~t~-------------------------------~~ipiKIl~I~tG~~L~t~~~---LL~h~K~I~FLE~~ 289 (411)
|..|++..... ...-|.+|++.+|+....+.. +.++...+..+..+
T Consensus 184 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S 263 (723)
T 1xfd_A 184 GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA 263 (723)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES
T ss_pred CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe
Confidence 98888775332 234799999999997555321 11235677788999
Q ss_pred cceeEEee------cCceeeEEEcccceEEEeecc---ccCC--CceEEEEeec-eeEEE-E-ecC------eEEEEe-c
Q 015220 290 NEKLLVKQ------ENENLQILDVRNFELTEVSRT---EFMT--PSAFIFLYEN-QLFLT-F-RNR------TVAVWN-F 348 (411)
Q Consensus 290 ~ekllIKQ------e~~~LkI~dL~t~e~~~v~~T---~f~h--psAfifLy~s-qlFlS-f-sd~------tI~iWn-~ 348 (411)
+|+.+|.. ....|.+||+.+++...+... .+.. +..+.|-... .+++. . .++ .|.+|| .
T Consensus 264 pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~ 343 (723)
T 1xfd_A 264 TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ 343 (723)
T ss_dssp SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS
T ss_pred CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEecc
Confidence 99876633 336799999999997764211 1111 1233333223 34443 3 555 577777 4
Q ss_pred CCce---eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 349 RGEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 349 ~Gel---~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.|.. .+.+..+.. -....+..||||+.|+..+.++ ..++++||++.+
T Consensus 344 ~~~~~~~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~-------~~~~~~l~~~~~ 393 (723)
T 1xfd_A 344 PNSSNDNIQSITSGDW----DVTKILAYDEKGNKIYFLSTED-------LPRRRQLYSANT 393 (723)
T ss_dssp CCSSSCCCCBSCCSSS----CEEEEEEEETTTTEEEEEESSS-------CTTCCEEEEECS
T ss_pred CCCCccceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCC-------CCcceEEEEEeC
Confidence 5444 566664322 1233468999999998766552 235888998864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-07 Score=88.56 Aligned_cols=212 Identities=12% Similarity=0.023 Sum_probs=129.9
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEee-CceEEEEecc---CceeEEEEe-CCEE--EEEEe------cCC----
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISD---KNVQEIKIS-PGIM--LLIFT------KAS---- 254 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~-~Ys~iysLs~---~~VqeIkIS-dG~~--Lai~q------~t~---- 254 (411)
...|.++.|+ ++|+.|.....+ ++.+||+. +.++....+. .....+.+| ||.. +++.+ -.+
T Consensus 39 ~~~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3479999997 467766544445 99999998 8876644331 234557778 7884 33433 010
Q ss_pred CceeeEEEEec-CCcEEeEeeecc-ccCCcceeeeeeccee--EEee-cCceeeEEEcc-cceEEEeeccc----cCCCc
Q 015220 255 GHVPLKILSIE-DGTVLKSFNHLL-HRNKKVDFIEQFNEKL--LVKQ-ENENLQILDVR-NFELTEVSRTE----FMTPS 324 (411)
Q Consensus 255 ~~ipiKIl~I~-tG~~L~t~~~LL-~h~K~I~FLE~~~ekl--lIKQ-e~~~LkI~dL~-t~e~~~v~~T~----f~hps 324 (411)
..-.+.+|++. +|++...+..+- .+...+..+..++++- ++.. +++.|.+||+. +|+...+.... ...|.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 12247999997 688776543211 2446788899999863 4433 56899999999 88876543211 22355
Q ss_pred eEEEEeec-eeEEEE-ecCeEEEEecC---Cceee------eeccccccCC-----CCccceEE-EcCCCCEEEEEecCC
Q 015220 325 AFIFLYEN-QLFLTF-RNRTVAVWNFR---GELVT------SFEDHLLWHP-----DCNTNNIY-ITSDQDLIISYCKAD 387 (411)
Q Consensus 325 AfifLy~s-qlFlSf-sd~tI~iWn~~---Gel~~------s~e~H~~~~~-----~c~~n~i~-Is~Dqd~iiS~~~d~ 387 (411)
.+.|-... .+|++- .+++|.+|+++ |++.. ++..+..-+. .-....+. +||||+.|++.+.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 44443222 455555 47899999875 66532 2222110000 00356788 999999987766543
Q ss_pred CCCccccCCceEEEeeec-ceee
Q 015220 388 SDDPLAEGNGKLFVSLLM-FVTC 409 (411)
Q Consensus 388 ~~~~~~~~~gtI~i~~i~-tGk~ 409 (411)
. ....|+|.+|++. +|++
T Consensus 277 ~----~~~~~~i~v~~~~~~g~~ 295 (365)
T 1jof_A 277 K----FELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp S----TTSCCEEEEEEECTTSCE
T ss_pred C----CCCCCeEEEEEECCCCCE
Confidence 0 0124699999996 7875
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-08 Score=91.79 Aligned_cols=209 Identities=13% Similarity=0.049 Sum_probs=138.9
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCC------------------------CeEEEEEeeCceEEEEeccC---ceeEEEEe
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQD------------------------SIYKVFDLKNYTMLYSISDK---NVQEIKIS 242 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~d------------------------s~ykVWdL~~Ys~iysLs~~---~VqeIkIS 242 (411)
..+..|.-|-|| ++|++++....+ +++.+||..+.+.+...... ....+.++
T Consensus 21 ~~l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 21 LLPGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CCCSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC
T ss_pred eecCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC
Confidence 346667778887 568999988877 47999999999988776532 68899999
Q ss_pred -CCEEEEEEecCCCceeeEEEEecCCc-EEeEeeec------cccCCcceeeeeec--ceeEEee--cCceeeEEEcccc
Q 015220 243 -PGIMLLIFTKASGHVPLKILSIEDGT-VLKSFNHL------LHRNKKVDFIEQFN--EKLLVKQ--ENENLQILDVRNF 310 (411)
Q Consensus 243 -dG~~Lai~q~t~~~ipiKIl~I~tG~-~L~t~~~L------L~h~K~I~FLE~~~--ekllIKQ--e~~~LkI~dL~t~ 310 (411)
+|.++ +.+..+.+ |.+|+..... .+.++... -++-..+.-|++.+ +.+++.. .++.|++|| .+|
T Consensus 100 ~~g~l~-v~d~~~~~--v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 100 TDGNYW-VTDVALHQ--VFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp TTSCEE-EEETTTTE--EEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred CCCCEE-EEECCCCE--EEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 88854 44444443 7788864432 55553210 12333566789986 5677777 489999999 566
Q ss_pred eEEE-ee---------ccccCCCceEEEEee-ceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCC
Q 015220 311 ELTE-VS---------RTEFMTPSAFIFLYE-NQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (411)
Q Consensus 311 e~~~-v~---------~T~f~hpsAfifLy~-sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq 377 (411)
+... +. +..+..|..+.+-.. .++|++- .+++|++|+++ |++++++..... .-....+..+| |
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~---~~~~~~~~~~p-g 251 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF---GRNVFAISYIP-G 251 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT---TTCEEEEEEET-T
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc---CCCcceeeecC-C
Confidence 6655 22 234455766555444 5889998 78899999999 999998854321 11445677788 4
Q ss_pred CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 378 DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 378 d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-++.+..+.-- ....+++|.+||+.+|+++
T Consensus 252 ~~~~~~g~~~v---~~~~~~~v~~~~~~~g~~~ 281 (329)
T 3fvz_A 252 FLFAVNGKPYF---GDQEPVQGFVMNFSSGEII 281 (329)
T ss_dssp EEEEEECCCCT---TCSCCCCEEEEETTTCCEE
T ss_pred EEEEeCCCEEe---ccCCCcEEEEEEcCCCeEE
Confidence 44444322110 0123369999999999875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-07 Score=92.30 Aligned_cols=210 Identities=14% Similarity=0.115 Sum_probs=147.0
Q ss_pred eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEe
Q 015220 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 187 F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I 264 (411)
+....+.+|-++-|| ++|++++....++.+++||+.+.+....+... ... +.++ +|..|++.+...+. -|.+|+.
T Consensus 125 ~~~a~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~-~I~~~d~ 201 (409)
T 3hrp_A 125 LASAKFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTH-TVYVYMK 201 (409)
T ss_dssp TTTCCCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTC-EEEEEEG
T ss_pred HHHcccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCc-eEEEEEc
Confidence 444578899999999 78999999998999999999987765544433 334 7888 77777777665443 6778888
Q ss_pred cCCcEEeEeeeccc-cCCcceeeeeec--ceeEEeecCceeeEEEcccceEEEeeccc-----cCCCc-eEEEEe-ecee
Q 015220 265 EDGTVLKSFNHLLH-RNKKVDFIEQFN--EKLLVKQENENLQILDVRNFELTEVSRTE-----FMTPS-AFIFLY-ENQL 334 (411)
Q Consensus 265 ~tG~~L~t~~~LL~-h~K~I~FLE~~~--ekllIKQe~~~LkI~dL~t~e~~~v~~T~-----f~hps-AfifLy-~sql 334 (411)
.++.....+..+.. ....+..+.+.+ ..+++...++.|..||+.+++...+.... ...|. ...|-. ...+
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 88776555321222 445667788887 45678777788999999988765541111 11233 333333 3578
Q ss_pred EEEE-ecCeEEEEecCCceeeeecccc---ccC-------CCCccceEEEcCCCCEEEEEe-cCCCCCccccCCceEEEe
Q 015220 335 FLTF-RNRTVAVWNFRGELVTSFEDHL---LWH-------PDCNTNNIYITSDQDLIISYC-KADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~Gel~~s~e~H~---~~~-------~~c~~n~i~Is~Dqd~iiS~~-~d~~~~~~~~~~gtI~i~ 402 (411)
|++- .+++|..|+++|. +.++.++. ++. ....-+.+++++||++.|+-+ .. +.|..|
T Consensus 282 yv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~----------~~I~~~ 350 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG----------YCLRKL 350 (409)
T ss_dssp EEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT----------CEEEEE
T ss_pred EEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC----------CEEEEE
Confidence 8887 6789999999998 55566654 211 123567899999999998855 44 499999
Q ss_pred eecceeee
Q 015220 403 LLMFVTCK 410 (411)
Q Consensus 403 ~i~tGk~~ 410 (411)
|+.+|++.
T Consensus 351 ~~~~G~v~ 358 (409)
T 3hrp_A 351 DILDGYVS 358 (409)
T ss_dssp ETTTTEEE
T ss_pred ECCCCEEE
Confidence 98888753
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.96 E-value=9.5e-07 Score=83.69 Aligned_cols=269 Identities=9% Similarity=0.100 Sum_probs=152.2
Q ss_pred cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCce---eeeEeeehhhhhhCCCCCCCccee--
Q 015220 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSS---LRCRSTRIEYIRRGKPDAGFALFE-- 188 (411)
Q Consensus 114 sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~---L~cr~~~~~~i~~gk~~~~~~LF~-- 188 (411)
.|....||..|++.+-.+-... .- .+-++...+.+.+++.+.+..... =....+. +..++.-..-++=.
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~--~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d---~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAF--NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD---ADKLTFEKEISLPPKR 103 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCE--EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE---TTTCCEEEEEEECTTB
T ss_pred cCeEEEEECCCCeEEEEecCCC--CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEE---CcCCcEEEEEEcCccc
Confidence 4567788888888877765542 22 677888777777765443221000 0111221 21111100000000
Q ss_pred ecccCCCCeEEeeCCCCeEEEeecC-CCeEEEEEeeCceEEEE-eccCceeEEEEe-CC-EEEEEEecCCCceeeEEEEe
Q 015220 189 SESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYS-ISDKNVQEIKIS-PG-IMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 189 ~~~l~~PgfvEFDd~NGkiLt~~~~-ds~ykVWdL~~Ys~iys-Ls~~~VqeIkIS-dG-~~Lai~q~t~~~ipiKIl~I 264 (411)
...-.+|..+-|+.-..++.+++.. ++++.|||+.+.+.+.+ |....-..+.+. +| ..++...+... +.++++
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~---~~~v~~ 180 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGG---LLTINL 180 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSS---EEEEEE
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCc---EEEEEE
Confidence 0012579999997655556666654 78999999999999988 764433223334 22 22222222222 344555
Q ss_pred cC-CcEEeEee--ecc-ccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeec---------cccCCCce--EE
Q 015220 265 ED-GTVLKSFN--HLL-HRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSR---------TEFMTPSA--FI 327 (411)
Q Consensus 265 ~t-G~~L~t~~--~LL-~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~---------T~f~hpsA--fi 327 (411)
++ |++..... ..+ ....++ ++... +..+++-..+..+.++|+..++...+.. .....|.. .+
T Consensus 181 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 181 GEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp CTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 54 66552211 011 111222 22222 3355555666789999998765332211 00012222 12
Q ss_pred EEe--eceeEEEEe-----------cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccc
Q 015220 328 FLY--ENQLFLTFR-----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (411)
Q Consensus 328 fLy--~sqlFlSfs-----------d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~ 393 (411)
.+. .+.+|++.+ +++|.+||+. ++.+.++..|. ...|++||||++|++.+.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------p~~ia~spdg~~l~v~n~-------- 324 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------ALSMTIDQQRNLMLTLDG-------- 324 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-------CCEEEEETTTTEEEEECS--------
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-------eeEEEECCCCCEEEEeCC--------
Confidence 222 247788776 3589999999 99999988764 678999999999998763
Q ss_pred cCCceEEEeeecce--eee
Q 015220 394 EGNGKLFVSLLMFV--TCK 410 (411)
Q Consensus 394 ~~~gtI~i~~i~tG--k~~ 410 (411)
|+|.+||..|| |++
T Consensus 325 ---~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 325 ---GNVNVYDISQPEPKLL 340 (361)
T ss_dssp ---SCEEEEECSSSSCEEE
T ss_pred ---CeEEEEECCCCcceee
Confidence 49999999999 764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.9e-09 Score=105.22 Aligned_cols=197 Identities=12% Similarity=0.082 Sum_probs=130.2
Q ss_pred EEeeCCCCeEEEeecC---------CCeEEEEEeeCceEE--EEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEec
Q 015220 198 VEFDDVNGKVLTYSAQ---------DSIYKVFDLKNYTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~---------ds~ykVWdL~~Ys~i--ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
+.| -+||+.|++... ++++++||+.+.+.+ ..|+ +.+..++.| ||..||+... -.|++|++.
T Consensus 65 ~~~-SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~~~~~~~~SPDG~~la~~~~----~~i~~~~~~ 138 (719)
T 1z68_A 65 YGL-SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-RPIQYLCWSPVGSKLAYVYQ----NNIYLKQRP 138 (719)
T ss_dssp EEE-CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-SSBCCEEECSSTTCEEEEET----TEEEEESST
T ss_pred EEE-CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC-cccccceECCCCCEEEEEEC----CeEEEEeCC
Confidence 344 368998888766 689999999998874 4454 578999999 8988887742 279999999
Q ss_pred CCcEEeEeeeccccCCc-----------------ceeeeeecceeEEee--cC---------------------------
Q 015220 266 DGTVLKSFNHLLHRNKK-----------------VDFIEQFNEKLLVKQ--EN--------------------------- 299 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~-----------------I~FLE~~~ekllIKQ--e~--------------------------- 299 (411)
+|+...-+. -++... ...+.-++|+-.|+. .+
T Consensus 139 ~g~~~~l~~--~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 139 GDPPFQITF--NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp TSCCEECCC--CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCcEEEec--CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 998754211 122111 136788888754443 21
Q ss_pred -------ceeeEEEcccceE---EEee--ccccCCCceEEEEeec---eeEEEEecC-----eEEEEe----cC-Cceee
Q 015220 300 -------ENLQILDVRNFEL---TEVS--RTEFMTPSAFIFLYEN---QLFLTFRNR-----TVAVWN----FR-GELVT 354 (411)
Q Consensus 300 -------~~LkI~dL~t~e~---~~v~--~T~f~hpsAfifLy~s---qlFlSfsd~-----tI~iWn----~~-Gel~~ 354 (411)
..|.+||+.+++. +.+. .++..|+..+..+..+ +++++..++ .|.+|| .. |+..+
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 1789999999885 2432 2344567666677665 666664332 488899 77 77666
Q ss_pred ee----ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 355 SF----EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 355 s~----e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.+ ++|..|-..-....+..||||+.|+..+.+. .+...|.+||+.+|+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK------DGYKHIHYIKDTVEN 348 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT------TSCEEEEEESSCSTT
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEcc------CCceEEEEEECCCCc
Confidence 66 5777742100012678999999776544443 234578888887765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-07 Score=84.73 Aligned_cols=191 Identities=7% Similarity=0.038 Sum_probs=139.2
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
|--+.+| ++++.+....++.+.|||.++.+.+.+|+ ......+.++ || .|.+.+... --|.+||+.|++++.+
T Consensus 46 ~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~--~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 46 AQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWD--YRIFIINPKTYEITGY 120 (328)
T ss_dssp EEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSC--SEEEEEETTTTEEEEE
T ss_pred ceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCC--CeEEEEECCCCeEEEE
Confidence 4445565 47888888888999999999999999886 4588999996 78 456665433 3578899999999987
Q ss_pred eeecccc----CCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEEe-c-----
Q 015220 273 FNHLLHR----NKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-N----- 340 (411)
Q Consensus 273 ~~~LL~h----~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSfs-d----- 340 (411)
+. ++. .....-|++.++++++.. .++.|.+||+.+++....- .....|..+.+-...++|++-. +
T Consensus 121 i~--~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i-~~g~~p~~i~~~~dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 121 IE--CPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDEL-TIGIQPTSLVMDKYNKMWTITDGGYEGSP 197 (328)
T ss_dssp EE--CTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEE-ECSSCBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred EE--cCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEE-EcCCCccceEEcCCCCEEEEECCCccCCc
Confidence 54 232 224556777888888886 3789999999999876522 2234566655544447777763 3
Q ss_pred -----CeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 341 -----RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 341 -----~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
++|.+||.. |+++.++.-..+ ...+.++++||++.|..... +|-++|..||++
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~g----~~p~~la~~~d~~~lyv~~~------------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKLG----DWPSEVQLNGTRDTLYWINN------------DIWRMPVEADRV 256 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCTT----CCCEEEEECTTSCEEEEESS------------SEEEEETTCSSC
T ss_pred cccCCceEEEEECCCCeEEEEEecCCC----CCceeEEEecCCCEEEEEcc------------EEEEEECCCCce
Confidence 699999998 888777653222 24678999999999876431 688888888875
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.5e-08 Score=103.21 Aligned_cols=190 Identities=9% Similarity=0.024 Sum_probs=129.0
Q ss_pred eEEeeCCCCeEEEeecCCCeEE-EEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYK-VFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~yk-VWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
.+.|. +|+.|++...+..+. +||+.+.+.. .|.++ .+..+.+| ||..|++.... -.+.+|++++|++...
T Consensus 342 ~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~---~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 342 RRGGD--TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGKPTVI 415 (1045)
T ss_dssp EECSS--SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEE
T ss_pred eeeEc--CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCC---CeEEEEECCCCceEEe
Confidence 35566 888888888877777 8898876543 44433 79999999 89988877643 3788999999998765
Q ss_pred eeeccccCCcceeeeeecceeEEee--c----------CceeeEEEcccceEEEeeccccCCCceEEEEeec---e-eEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVKQ--E----------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---Q-LFL 336 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIKQ--e----------~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---q-lFl 336 (411)
+-+|..++..+..++++-.|.. . ...|.+||+.+++... +..|......++.+ + +++
T Consensus 416 ---~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~----l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 416 ---ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA----ATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp ---EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE----CSCSSSBEEEEEECTTSCEEEE
T ss_pred ---ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEE----eeCCCcccCCceEcCCCCEEEE
Confidence 2368888899999999764433 2 1489999999998553 44455555555544 3 333
Q ss_pred EEecCeEEEEecC-Cce-------------------------------------------eeeeccccccCCCCccceEE
Q 015220 337 TFRNRTVAVWNFR-GEL-------------------------------------------VTSFEDHLLWHPDCNTNNIY 372 (411)
Q Consensus 337 Sfsd~tI~iWn~~-Gel-------------------------------------------~~s~e~H~~~~~~c~~n~i~ 372 (411)
+-.++...+|+.. +++ +..+..|.. ....+.
T Consensus 489 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~-----~~~~~~ 563 (1045)
T 1k32_A 489 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG-----DYRMII 563 (1045)
T ss_dssp EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB-----CEEEEE
T ss_pred EecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCC-----ChhheE
Confidence 3344555555433 211 122222323 577899
Q ss_pred EcCCCCEEEEEe---------cCCCCCccccCCceEEEeeecceeee
Q 015220 373 ITSDQDLIISYC---------KADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 373 Is~Dqd~iiS~~---------~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+||||+++++.. .+. ...++|.+||+.||+..
T Consensus 564 ~s~dg~~~~~~~~~g~~~~~~~~~------~~~~~l~~~d~~~~~~~ 604 (1045)
T 1k32_A 564 PLESSILIYSVPVHGEFAAYYQGA------PEKGVLLKYDVKTRKVT 604 (1045)
T ss_dssp ECSSEEEEEECCCCCSHHHHHHCC------CCCEEEEEEETTTCCEE
T ss_pred EcCCCeEEEEecccCccccccccc------CCCceEEEEECCCCcEE
Confidence 999999999732 222 23468999999998753
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-07 Score=84.67 Aligned_cols=189 Identities=10% Similarity=0.049 Sum_probs=116.7
Q ss_pred CCCCeEEEeecC-CCe--EEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 202 DVNGKVLTYSAQ-DSI--YKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 202 d~NGkiLt~~~~-ds~--ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
-++|+-|++... ++. +.+||+.+.+.......+ .+....+| ||..|++.... --|.+|++.+|+...-+..
T Consensus 44 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~---~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 44 TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG---RNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT---TEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC---CeEEEEECCCCcceeeeec
Confidence 478998888877 564 667788888766544433 33356899 88888877743 3688999999997764321
Q ss_pred ccccCCcc---eeeeeecceeEEe------------------------ecCceeeEEEcccceEEEeeccccCCCceEEE
Q 015220 276 LLHRNKKV---DFIEQFNEKLLVK------------------------QENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (411)
Q Consensus 276 LL~h~K~I---~FLE~~~ekllIK------------------------Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif 328 (411)
+...+ .++ ..+++-++. +....|.+||+.+++...+.. ++..+..
T Consensus 121 ---~~~~~~~~~~~-~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~~~~~~ 192 (388)
T 3pe7_A 121 ---PAEWVGYGTWV-ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ----ENQWLGH 192 (388)
T ss_dssp ---CTTEEEEEEEE-ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE----ESSCEEE
T ss_pred ---hhhccccccee-ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec----CCccccc
Confidence 11111 111 234443332 244789999999999887532 3333333
Q ss_pred Eeec-----eeEEEEe------cCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 329 LYEN-----QLFLTFR------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 329 Ly~s-----qlFlSfs------d~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
+..+ .+.++-. ...|-+|++.|..++.+..|.. ...+.....||||+.|+..+.... ...+
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~---~~~~~~~~~spdg~~l~~~~~~~~-----~~~~ 264 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE---GESCTHEFWVPDGSALVYVSYLKG-----SPDR 264 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT---TEEEEEEEECTTSSCEEEEEEETT-----CCCE
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC---CcccccceECCCCCEEEEEecCCC-----CCcc
Confidence 3322 2322222 2367777877766666665542 113557889999997765554430 1225
Q ss_pred eEEEeeecceee
Q 015220 398 KLFVSLLMFVTC 409 (411)
Q Consensus 398 tI~i~~i~tGk~ 409 (411)
+|.+||+.||+.
T Consensus 265 ~l~~~d~~~g~~ 276 (388)
T 3pe7_A 265 FIYSADPETLEN 276 (388)
T ss_dssp EEEEECTTTCCE
T ss_pred eEEEEecCCCce
Confidence 799999999984
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.8e-07 Score=91.09 Aligned_cols=243 Identities=9% Similarity=0.064 Sum_probs=148.2
Q ss_pred eEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCC--CeEEeeCCCCeEEEeecCCC
Q 015220 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP--GFVEFDDVNGKVLTYSAQDS 215 (411)
Q Consensus 138 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~P--gfvEFDd~NGkiLt~~~~ds 215 (411)
.+.++-++...+.|.+++.....+-..+ +.. ++.-|+.- ....+.+- .-+.|- ++|+.|+|...+.
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i--~v~---dl~tg~~~------~~~~~~~~~~~~~~ws-pDg~~l~~~~~d~ 189 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVL--HVI---DVDSGEWS------KVDVIEGGKYATPKWT-PDSKGFYYEWLPT 189 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEE--EEE---ETTTCCBC------SSCCBSCCTTCCCEEC-TTSSEEEEEECCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEE--EEE---ECCCCCCc------CCcccCcccccceEEe-cCCCEEEEEEecC
Confidence 5777777777666666554433221222 333 33333321 01111111 233443 5889999988877
Q ss_pred e-------------EEEEEeeCce----EEEEeccC--ceeEEEEe-CCEEEEEEecCC-CceeeEEEEecCCcEEeEee
Q 015220 216 I-------------YKVFDLKNYT----MLYSISDK--NVQEIKIS-PGIMLLIFTKAS-GHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 216 ~-------------ykVWdL~~Ys----~iysLs~~--~VqeIkIS-dG~~Lai~q~t~-~~ipiKIl~I~tG~~L~t~~ 274 (411)
. +++|++.+.+ ++++..++ .+..+.+| ||..|++....+ ...-|.+|+..+|+...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~--- 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL--- 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE---
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE---
Confidence 6 9999998865 77777665 68899999 898888877665 67777888887776432
Q ss_pred eccccCC-cceeeeeecceeEEeec----CceeeEEEcccceE---EEe-eccccCCCceEEEEeeceeEEEE-ecCeEE
Q 015220 275 HLLHRNK-KVDFIEQFNEKLLVKQE----NENLQILDVRNFEL---TEV-SRTEFMTPSAFIFLYENQLFLTF-RNRTVA 344 (411)
Q Consensus 275 ~LL~h~K-~I~FLE~~~ekllIKQe----~~~LkI~dL~t~e~---~~v-~~T~f~hpsAfifLy~sqlFlSf-sd~tI~ 344 (411)
+..+.. ....+. ..+++++.+. +.+|.+||+.+++. ..+ +......-+.+.+ ...+++++. .|++.+
T Consensus 267 -l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 267 -LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI-VGGHLSLEYLKDATSE 343 (695)
T ss_dssp -EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE-ETTEEEEEEEETTEEE
T ss_pred -eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE-ECCEEEEEEEECCEEE
Confidence 333333 333333 4444666554 57899999988763 332 1110000122222 245788877 788888
Q ss_pred EEecC--CceeeeeccccccCCCCccceEEEcCCCCEEE-EEecCCCCCccccCCceEEEeeecceee
Q 015220 345 VWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 345 iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ii-S~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
||.++ |..++.+..|. ...+..+..++|++.++ +++... .-++|.+||+.||+.
T Consensus 344 l~~~~~~g~~~~~l~~~~----~~~v~~~~~s~d~~~l~~~~ss~~-------~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG----VGAASNLMGLEDLDDAYYVFTSFT-------TPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTCCEEEECCCSS----SSEECCCBSCTTCSEEEEEEEETT-------EEEEEEEEETTTCCE
T ss_pred EEEEeCCCCeeEEecCCC----CeEEEEeecCCCCCEEEEEEcCCC-------CCCEEEEEECCCCcE
Confidence 88665 87777766441 23667778889997555 554432 226999999999975
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.82 E-value=7.9e-08 Score=95.30 Aligned_cols=200 Identities=13% Similarity=0.043 Sum_probs=126.4
Q ss_pred CeEEeeCCCCeEEEeecCC----------CeEEEEEeeC------ceEEEEec-c--CceeEEEEe-CCEEEEEEecCC-
Q 015220 196 GFVEFDDVNGKVLTYSAQD----------SIYKVFDLKN------YTMLYSIS-D--KNVQEIKIS-PGIMLLIFTKAS- 254 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~d----------s~ykVWdL~~------Ys~iysLs-~--~~VqeIkIS-dG~~Lai~q~t~- 254 (411)
..+.|. +||+.|++...+ ..+.+||+.+ .+. ..|+ . ..+..+.+| ||..|++....+
T Consensus 133 ~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~ 210 (662)
T 3azo_A 133 ADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHP 210 (662)
T ss_dssp EEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred cCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence 344554 688888877766 6899999988 543 4555 3 378889999 998888776555
Q ss_pred ----CceeeEEEEec-CCcEEeEeeeccccCCcceeeeeecceeE-Ee-ecCc--eeeEEEcccceEEEeeccc--cCCC
Q 015220 255 ----GHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLL-VK-QENE--NLQILDVRNFELTEVSRTE--FMTP 323 (411)
Q Consensus 255 ----~~ipiKIl~I~-tG~~L~t~~~LL~h~K~I~FLE~~~ekll-IK-Qe~~--~LkI~dL~t~e~~~v~~T~--f~hp 323 (411)
...-|.+|++. +|+......+.-++...+..+.-++|+.+ +. ..+. +|.+||+.+++...+.... +..|
T Consensus 211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p 290 (662)
T 3azo_A 211 RMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGP 290 (662)
T ss_dssp CCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCC
T ss_pred CCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCc
Confidence 34579999999 68321111112234677788888877643 33 3344 7888888888887653221 1122
Q ss_pred ------ceEEEEeeceeEEEEecCeEEEE--ecCCceeeeeccccccCCCCccceEEEcCCCCEE-EEEecCCCCCcccc
Q 015220 324 ------SAFIFLYENQLFLTFRNRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAE 394 (411)
Q Consensus 324 ------sAfifLy~sqlFlSfsd~tI~iW--n~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i-iS~~~d~~~~~~~~ 394 (411)
..+.|....+++++.+.++++|| |+.|..++.+..|.. .+..+. ++|++.+ ++++.+.
T Consensus 291 ~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-----~~~~~~-s~~~~~~~~~~~~~~------- 357 (662)
T 3azo_A 291 LWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGPWT-----EWAATL-TVSGTRAVGVAASPR------- 357 (662)
T ss_dssp CCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSSCC-----EEEEEE-EEETTEEEEEEEETT-------
T ss_pred cccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCCCC-----eEEEEE-ecCCCEEEEEEcCCC-------
Confidence 23344445577777733999999 666555788888865 455553 6666643 3333332
Q ss_pred CCceEEEeeecceeee
Q 015220 395 GNGKLFVSLLMFVTCK 410 (411)
Q Consensus 395 ~~gtI~i~~i~tGk~~ 410 (411)
...+|-++|+.+|++.
T Consensus 358 ~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 358 TAYEVVELDTVTGRAR 373 (662)
T ss_dssp EEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCceE
Confidence 2346666677788753
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-06 Score=78.81 Aligned_cols=203 Identities=10% Similarity=0.063 Sum_probs=128.6
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEe--ccCceeEEEEe-CCEEEEEEecC-CCceeeEEEEecCCc
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKIS-PGIMLLIFTKA-SGHVPLKILSIEDGT 268 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysL--s~~~VqeIkIS-dG~~Lai~q~t-~~~ipiKIl~I~tG~ 268 (411)
.+|.-+-|| ++|++++....++.+.+||..+.+..... ....+..+.++ +|.+++..... ....-|.+|+..+++
T Consensus 45 ~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 45 LQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred ccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence 456667777 78998888888899999999987755433 35689999998 88765554322 112357889999988
Q ss_pred EEeEeeeccccCCcceeeeeeccee-EEeec-------CceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFNEKL-LVKQE-------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF- 338 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe-------~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf- 338 (411)
....+. ...+...+.-+...+++. ++... ...|-.||..+++...+.. .+..|..+.+-... .+|++-
T Consensus 124 ~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~ 201 (333)
T 2dg1_A 124 LQDIIE-DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTET 201 (333)
T ss_dssp CEEEEC-SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEG
T ss_pred EEEEEc-cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCCcccceEECCCCCEEEEEeC
Confidence 653321 113445677788887765 44433 2467777777666665432 22334333222222 366766
Q ss_pred ecCeEEEEecC--Cceeeeecccccc--CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 339 RNRTVAVWNFR--GELVTSFEDHLLW--HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 339 sd~tI~iWn~~--Gel~~s~e~H~~~--~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.++.|.+|+++ |..++.+...... ...-..+.+++++||.+.++...+. .|.+||. +|+.
T Consensus 202 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~----------~v~~~d~-~g~~ 265 (333)
T 2dg1_A 202 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG----------RVLVFNK-RGYP 265 (333)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT----------EEEEECT-TSCE
T ss_pred CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCC----------EEEEECC-CCCE
Confidence 57899999994 6655443221110 0112457799999999999876654 8888887 4553
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=92.15 Aligned_cols=189 Identities=7% Similarity=-0.047 Sum_probs=122.7
Q ss_pred CCCCeE-EEeecCCCeEEEEEeeCc----eEEEEecc-------CceeEEEEe-CCEEEEEEecC-------CCceeeEE
Q 015220 202 DVNGKV-LTYSAQDSIYKVFDLKNY----TMLYSISD-------KNVQEIKIS-PGIMLLIFTKA-------SGHVPLKI 261 (411)
Q Consensus 202 d~NGki-Lt~~~~ds~ykVWdL~~Y----s~iysLs~-------~~VqeIkIS-dG~~Lai~q~t-------~~~ipiKI 261 (411)
-+||+. |++...+ ..+||.+..- .....|+. ..+..+.+| ||..|+..... ....-|.+
T Consensus 87 SPDg~~~la~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 87 RPAGGPLLVFTHFG-DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp CSSSSCEEEEEBTT-TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred ecCCCeEEEEEECC-CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 378888 7776553 5566666543 55677776 268889999 88877776654 45578999
Q ss_pred EEecC------CcEEeEeeecc-ccCCcceeeeeecceeEE--eecC--------ceeeEEEcc-cc---eEEEeecccc
Q 015220 262 LSIED------GTVLKSFNHLL-HRNKKVDFIEQFNEKLLV--KQEN--------ENLQILDVR-NF---ELTEVSRTEF 320 (411)
Q Consensus 262 l~I~t------G~~L~t~~~LL-~h~K~I~FLE~~~ekllI--KQe~--------~~LkI~dL~-t~---e~~~v~~T~f 320 (411)
|++.+ |++. . +. .+...+..+..++|+-.| .+.+ ..|.+||+. +| +...+..
T Consensus 166 ~~~~~~~~~~~~~~~-~---l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~--- 238 (662)
T 3azo_A 166 VPLDGSAAADRSAVR-E---LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG--- 238 (662)
T ss_dssp EETTSTTTTCGGGSE-E---SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE---
T ss_pred EECCCCccccCCcee-E---EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC---
Confidence 99999 6653 3 44 445667778899988533 3422 479999999 67 5555422
Q ss_pred CCCceEEEEeec---eeEEEE-ecC--eEEEEecC-Cceeeeecccccc-CCCCc--cceEEEcCCCCEEEEEecCCCCC
Q 015220 321 MTPSAFIFLYEN---QLFLTF-RNR--TVAVWNFR-GELVTSFEDHLLW-HPDCN--TNNIYITSDQDLIISYCKADSDD 390 (411)
Q Consensus 321 ~hpsAfifLy~s---qlFlSf-sd~--tI~iWn~~-Gel~~s~e~H~~~-~~~c~--~n~i~Is~Dqd~iiS~~~d~~~~ 390 (411)
.+...+..+..+ +++++. .++ .|-+||+. |++.+-...|... .|... ...+..++|+.++++++. .
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~--- 314 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G--- 314 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S---
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C---
Confidence 233444444443 565555 566 56666665 6655444443322 23222 467999999999999876 5
Q ss_pred ccccCCceEEEe--eecceee
Q 015220 391 PLAEGNGKLFVS--LLMFVTC 409 (411)
Q Consensus 391 ~~~~~~gtI~i~--~i~tGk~ 409 (411)
+++|| |+.+|+.
T Consensus 315 -------~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 315 -------AAVLGILDPESGEL 328 (662)
T ss_dssp -------SCEEEEEETTTTEE
T ss_pred -------ccEEEEEECCCCcE
Confidence 77888 6666653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.6e-07 Score=80.80 Aligned_cols=197 Identities=13% Similarity=0.081 Sum_probs=121.2
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceE--EEEeccCceeEE--EEe-CCEEEEEEec-------------------CCCce
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISDKNVQEI--KIS-PGIMLLIFTK-------------------ASGHV 257 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~--iysLs~~~VqeI--kIS-dG~~Lai~q~-------------------t~~~i 257 (411)
.++|+.|++...+..+.+||+.+.+. ++......+... ..+ ||.+++.... .....
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 89 SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 57899999999999999999999874 455555444333 335 8887775442 23446
Q ss_pred eeEEEEecCCcEEeEeeeccccCCcceeeeeec-ceeEE--eec------CceeeEEEcccceEEEeeccccCCCceEEE
Q 015220 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLV--KQE------NENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~-ekllI--KQe------~~~LkI~dL~t~e~~~v~~T~f~hpsAfif 328 (411)
-|.+|++.+|+... +..+...+..+..++ ++-.| ..+ ...|.++|+.+++...+.. ......+..
T Consensus 169 ~l~~~d~~~g~~~~----l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~ 242 (388)
T 3pe7_A 169 RLMRVDLKTGESTV----ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT--HAEGESCTH 242 (388)
T ss_dssp EEEEEETTTCCEEE----EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC--CCTTEEEEE
T ss_pred eEEEEECCCCceEE----eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee--CCCCccccc
Confidence 78999999998654 345556678888998 66432 333 3378888888887776422 111133444
Q ss_pred Eeec----ee-EEEEecC----eEEEEecC-Cc--eeeeeccc--cccCCCCccceEEEcCCCCEEEEEecCCCCCcccc
Q 015220 329 LYEN----QL-FLTFRNR----TVAVWNFR-GE--LVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (411)
Q Consensus 329 Ly~s----ql-FlSfsd~----tI~iWn~~-Ge--l~~s~e~H--~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~ 394 (411)
+..+ .+ |++..++ .|.+||+. |+ +++.+.++ ..+. ...+.+||||+.|+....+.. .-...
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~-~~~~~ 317 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSN----YDGSLMVGDGSDAPVDVQDDS-GYKIE 317 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEEC----TTSSEEEEEECCC-------------C
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeec----CCCCeEccCCCcceeEeeecc-ccccC
Confidence 4544 34 4444433 39999999 66 45566652 2221 223468999998776543310 00012
Q ss_pred CCceEEEeeecceee
Q 015220 395 GNGKLFVSLLMFVTC 409 (411)
Q Consensus 395 ~~gtI~i~~i~tGk~ 409 (411)
+.+.|.+||+.+|++
T Consensus 318 ~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQ 332 (388)
T ss_dssp CCCEEEEEETTTTEE
T ss_pred CCCEEEEEeccCCce
Confidence 346899999999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-06 Score=76.43 Aligned_cols=182 Identities=11% Similarity=0.124 Sum_probs=113.7
Q ss_pred EEeeCCCCeEEEeecCC---C--eEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecC------------------
Q 015220 198 VEFDDVNGKVLTYSAQD---S--IYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKA------------------ 253 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~d---s--~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t------------------ 253 (411)
+.| -++|+-|++...+ + .+.+||+.+.+.........+..+..| ||..|++....
T Consensus 64 ~~~-SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 64 PRI-SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp EEE-CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCCC--
T ss_pred eEE-CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceeec
Confidence 444 3678877776543 2 366778888765443333349999999 88777776532
Q ss_pred ------CCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee-cC------c-eeeEEEcccceEEEeeccc
Q 015220 254 ------SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-EN------E-NLQILDVRNFELTEVSRTE 319 (411)
Q Consensus 254 ------~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ-e~------~-~LkI~dL~t~e~~~v~~T~ 319 (411)
....-|.+|++.+|+.+..+. . . .+..+..+++++++.. .+ . ..+||.+.+++...+...
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~---~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~- 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFE---K-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK- 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEE---E-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-
T ss_pred CcccccCccceEEEEECCCCeEEeeec---C-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCceEEeccC-
Confidence 114568899999999866533 2 2 6777888999854443 11 1 334554448877765432
Q ss_pred cCCCceEEEEeec--eeEEEEec--------CeEEEEecCCceeeeeccccccCCCCccce-EEEcCCCCEEEEEecCCC
Q 015220 320 FMTPSAFIFLYEN--QLFLTFRN--------RTVAVWNFRGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKADS 388 (411)
Q Consensus 320 f~hpsAfifLy~s--qlFlSfsd--------~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~-i~Is~Dqd~iiS~~~d~~ 388 (411)
..+..+.-. .+++...+ ..|.+|+ .|+..+-..+|.. .+.. +..+ || ++++++.+.
T Consensus 217 ----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~-----~~~~~~~~s-dg-~~~~~~~~~- 283 (347)
T 2gop_A 217 ----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDR-----GVGQAKIKD-GK-VYFTLFEEG- 283 (347)
T ss_dssp ----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCS-----EEEEEEEET-TE-EEEEEEETT-
T ss_pred ----cceeeECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCc-----ccCCccEEc-Cc-EEEEEecCC-
Confidence 122222211 34343322 3677888 7776655555544 4554 7888 99 999988876
Q ss_pred CCccccCCceEEEeeecceee
Q 015220 389 DDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~tGk~ 409 (411)
++.|| +.+|++
T Consensus 284 ---------~~~l~-~~~g~~ 294 (347)
T 2gop_A 284 ---------SVNLY-IWDGEI 294 (347)
T ss_dssp ---------EEEEE-EESSSE
T ss_pred ---------cEEEE-EcCCce
Confidence 89999 877764
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-06 Score=73.85 Aligned_cols=195 Identities=11% Similarity=0.077 Sum_probs=128.9
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEE-ecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCC
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-ISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iys-Ls~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG 267 (411)
.+..|--+.||. +|++.+... ++.+.+||..+...... ... ..+..+.++ +|.+++ .....+ -|.+|+..++
T Consensus 65 ~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v-~~~~~~--~i~~~~~~~~ 139 (270)
T 1rwi_B 65 GLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYV-ADRGNN--RVVKLAAGSK 139 (270)
T ss_dssp SCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEE-EEGGGT--EEEEECTTCC
T ss_pred CcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEE-EECCCC--EEEEEECCCc
Confidence 345788899976 788888777 88899999877553321 122 478899998 777444 433333 2445554444
Q ss_pred cEEeEeeeccccCCcceeeeeec-ceeEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEE
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVA 344 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~-ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~ 344 (411)
+.... .......+.-|.+.+ +++++.. .++.|.+||..++.......+.+..|..+.+-....+|++- .++.|.
T Consensus 140 ~~~~~---~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~ 216 (270)
T 1rwi_B 140 TQTVL---PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVV 216 (270)
T ss_dssp SCEEC---CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEE
T ss_pred eeEee---ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEE
Confidence 33221 122334566688876 4566665 46799999999887766443444455544332233788887 578999
Q ss_pred EEecCCceeeeec-cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 345 VWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 345 iWn~~Gel~~s~e-~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+|+..|.....+. .+.. ....+++++||.+.++.+.+. +|.++++...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~-----~p~~i~~~~~g~l~v~~~~~~----------~v~~~~~~~~~ 266 (270)
T 1rwi_B 217 KLLAGSTTSTVLPFTGLN-----TPLAVAVDSDRTVYVADRGND----------RVVKLTSLEHH 266 (270)
T ss_dssp EECTTCSCCEECCCCSCS-----CEEEEEECTTCCEEEEEGGGT----------EEEEECCCGGG
T ss_pred EEcCCCCcceeeccCCCC-----CceeEEECCCCCEEEEECCCC----------EEEEEcCCCcc
Confidence 9999987655433 2322 567899999999999988776 99999887654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-05 Score=80.83 Aligned_cols=244 Identities=13% Similarity=0.121 Sum_probs=146.0
Q ss_pred eEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc-eeecccCCCCeEEeeCCCCeEEEeecCCCe
Q 015220 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL-FESESLKWPGFVEFDDVNGKVLTYSAQDSI 216 (411)
Q Consensus 138 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L-F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ 216 (411)
.+.++-+......|.+.+.....+-..| +.. ++.-|+. .++ ..... .+-+.|- ++|+.|.|...+..
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i--~v~---d~~tg~~---~~~~~~~~~---~~~~~ws-pDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTI--KFM---KVDGAKE---LPDVLERVK---FSCMAWT-HDGKGMFYNAYPQQ 193 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEE--EEE---ETTTTEE---EEEEEEEEC---SCCEEEC-TTSSEEEEEECCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEE--EEE---ECCCCCC---CcccccCcc---cceEEEE-eCCCEEEEEEECCc
Confidence 5667777776666666554433221222 222 2222221 011 11111 2334443 58888888877665
Q ss_pred ----------------EEEEEeeCce----EEEEeccC--ceeEEEEe-CCEEEEEEecCCC--ceeeEEEEecC-----
Q 015220 217 ----------------YKVFDLKNYT----MLYSISDK--NVQEIKIS-PGIMLLIFTKASG--HVPLKILSIED----- 266 (411)
Q Consensus 217 ----------------ykVWdL~~Ys----~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~--~ipiKIl~I~t----- 266 (411)
+.+|++.+.+ ++++-.++ .+..+.+| ||..|++...... ..-|.+|++.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 8899998865 66666543 47789999 8988887765332 56788999998
Q ss_pred -Cc-EEeEeeeccccCCcce-eeeeecceeEEeec----CceeeEEEcccceE---EE-eeccccCCCceEEEEeeceeE
Q 015220 267 -GT-VLKSFNHLLHRNKKVD-FIEQFNEKLLVKQE----NENLQILDVRNFEL---TE-VSRTEFMTPSAFIFLYENQLF 335 (411)
Q Consensus 267 -G~-~L~t~~~LL~h~K~I~-FLE~~~ekllIKQe----~~~LkI~dL~t~e~---~~-v~~T~f~hpsAfifLy~sqlF 335 (411)
|+ .+.. +..+...+. .+..-++.+++... +.+|.+||+.+++. .. ++......-+.+.+.....++
T Consensus 274 ~~~~~~~~---l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 274 TGILKWVK---LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp CSSCCCEE---EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred CCccceEE---eeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence 64 3444 344444333 33344566777664 33699999998752 22 211111011122222244777
Q ss_pred EEE-ecC--eEEEEec-CCceeeeeccccccCCCCccceEEEcCCCCE-EEEEecCCCCCccccCCceEEEeeeccee
Q 015220 336 LTF-RNR--TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 336 lSf-sd~--tI~iWn~-~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~-iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++. .++ .|.+|++ .|..++.+..|.. .+..+..+||++. .++++... .-++|-.||+.||+
T Consensus 351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~-----~v~~~~~s~d~~~l~~~~ss~~-------~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 351 LCYLHDVKNTLQLHDLATGALLKIFPLEVG-----SVVGYSGQKKDTEIFYQFTSFL-------SPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECCCSS-----EEEEEECCTTCSEEEEEEECSS-------CCCEEEEEETTSSS
T ss_pred EEEEECCEEEEEEEECCCCCEEEecCCCCc-----eEEEEecCCCCCEEEEEEeCCC-------CCCEEEEEECCCCc
Confidence 777 565 4667788 5988888887755 6778889999965 45555543 22699999999988
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-07 Score=93.35 Aligned_cols=141 Identities=9% Similarity=0.003 Sum_probs=97.0
Q ss_pred eeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc---cee--eeeecceeEE--eecC--------
Q 015220 236 VQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK---VDF--IEQFNEKLLV--KQEN-------- 299 (411)
Q Consensus 236 VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~---I~F--LE~~~ekllI--KQe~-------- 299 (411)
...++.| ||.+|+.. . --|++|++.||+.... +-+|+.. +.+ ...++|+..| .++.
T Consensus 19 ~~~~~w~~dg~~~~~~---~--~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ---E--NNILVFNAEYGNSSVF---LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCEEECSSSEEEEEE---T--TEEEEEETTTCCEEEE---ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccccEECCCCcEEEEc---C--CcEEEEECCCCceEEE---EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 4467777 88888775 2 2689999999998655 3344322 344 6778887644 4443
Q ss_pred -ceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEEecCeEEEEecC-Cceee-eeccccccCCC--------
Q 015220 300 -ENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTFRNRTVAVWNFR-GELVT-SFEDHLLWHPD-------- 365 (411)
Q Consensus 300 -~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSfsd~tI~iWn~~-Gel~~-s~e~H~~~~~~-------- 365 (411)
..+.+||+.+++... +..|+........| +.++..+++.|.+|+.. |+..+ |+.++..+..+
T Consensus 91 ~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 91 TASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred ceEEEEEECCCCcEEE----cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence 356699999999764 44567777777777 44444499999999998 66554 56666432100
Q ss_pred ----CccceEEEcCCCCEEEEEecCCC
Q 015220 366 ----CNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 366 ----c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
-....+..||||+.|++++.|+.
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~ 193 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDT 193 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred chhcCCCcceEECCCCCEEEEEEEccc
Confidence 12346889999999999987765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00017 Score=62.65 Aligned_cols=272 Identities=10% Similarity=0.055 Sum_probs=160.2
Q ss_pred cceEEEeec-cceehhhhc-cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 015220 96 SKIIEIVAA-RDIVFALAQ-SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (411)
Q Consensus 96 S~V~EIv~a-~dii~~L~~-sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 173 (411)
+.+..|... +.-+.+-.. .|.-..||.. ++..-+..+.....+++|...+... +.+ +... + ..+. ..+.
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~~~-~--~~i~--~~~~- 85 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWF-TENA-A--NKIG--RITK- 85 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEE-EETT-T--TEEE--EECT-
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEE-eCCC-C--CeEE--EECC-
Confidence 344555544 223333333 4666778877 7766655555567788999887544 333 2211 1 1111 1110
Q ss_pred hhhhCCCCCCCccee-ecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEec--cCceeEEEEe-CCEEEE
Q 015220 174 YIRRGKPDAGFALFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS--DKNVQEIKIS-PGIMLL 248 (411)
Q Consensus 174 ~i~~gk~~~~~~LF~-~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs--~~~VqeIkIS-dG~~La 248 (411)
.|+. ..|. ......|--+.+| ++|++.+....++.+.+||. +.+.. +.+. ...+..+.++ +|.+++
T Consensus 86 ---~g~~----~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 156 (299)
T 2z2n_A 86 ---KGII----KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWF 156 (299)
T ss_dssp ---TSCE----EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred ---CCcE----EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEE
Confidence 0111 1111 1134567788888 58899988877888999998 44433 3443 2478888888 776555
Q ss_pred EEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc-eeEEee-cCceeeEEEcccceEEEeecc-ccCCCce
Q 015220 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE-KLLVKQ-ENENLQILDVRNFELTEVSRT-EFMTPSA 325 (411)
Q Consensus 249 i~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e-kllIKQ-e~~~LkI~dL~t~e~~~v~~T-~f~hpsA 325 (411)
... ..+ -|.+|+. +|+...- . +-.....+.-|.+.++ .+++.. .++.|.+||. +++...+... ....|.+
T Consensus 157 ~~~-~~~--~i~~~~~-~g~~~~~-~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 229 (299)
T 2z2n_A 157 TEN-QNN--AIGRITE-SGDITEF-K-IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHA 229 (299)
T ss_dssp EET-TTT--EEEEECT-TCCEEEE-E-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred EeC-CCC--EEEEEcC-CCcEEEe-e-CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCcee
Confidence 433 222 3667888 8877642 1 1123345666777765 456665 4788999999 8876654221 2233433
Q ss_pred EEEEeeceeEEEE-ecCeEEEEecCCceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 326 FIFLYENQLFLTF-RNRTVAVWNFRGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 326 fifLy~sqlFlSf-sd~tI~iWn~~Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+.+-...++|++- .++.|..|++.|++.. .+.++.. ....+++ +||.+.++.+. . .|..+|
T Consensus 230 i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~-----~~~~i~~-~~g~l~v~~~~-~----------~l~~~~ 292 (299)
T 2z2n_A 230 ITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSA-----EPHGICF-DGETIWFAMEC-D----------KIGKLT 292 (299)
T ss_dssp EEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSC-----CEEEEEE-CSSCEEEEETT-T----------EEEEEE
T ss_pred EEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCC-----ccceEEe-cCCCEEEEecC-C----------cEEEEE
Confidence 3332233788887 6789999999886543 2334433 6788888 99999998753 3 788888
Q ss_pred ecceee
Q 015220 404 LMFVTC 409 (411)
Q Consensus 404 i~tGk~ 409 (411)
..++++
T Consensus 293 ~~~~~~ 298 (299)
T 2z2n_A 293 LIKDNM 298 (299)
T ss_dssp EC----
T ss_pred cCcccC
Confidence 888875
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.5e-06 Score=85.38 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=134.6
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEec--CCcEEeEeeeccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE--DGTVLKSFNHLLH 278 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~--tG~~L~t~~~LL~ 278 (411)
+.+..++....++++-|||..+.+.+.+|. +..+..+.+| ||-+|.+.... -.|.+||+. |++++.++. .|
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~d---g~V~viD~~~~t~~~v~~i~--~G 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRD---GKVNMIDLWMKEPTTVAEIK--IG 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCCEEEEEE--CC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCC---CeEEEEECCCCCCcEeEEEe--cC
Confidence 578899999999999999999999998886 5588899999 89988887643 369999995 999988743 23
Q ss_pred cCCcceeeeee----cc--eeEEeec-CceeeEEEcccceEEEeeccc-------cCCCc-eEEEEeec----eeEEEE-
Q 015220 279 RNKKVDFIEQF----NE--KLLVKQE-NENLQILDVRNFELTEVSRTE-------FMTPS-AFIFLYEN----QLFLTF- 338 (411)
Q Consensus 279 h~K~I~FLE~~----~e--kllIKQe-~~~LkI~dL~t~e~~~v~~T~-------f~hps-AfifLy~s----qlFlSf- 338 (411)
....-++++ +| ++++..+ ++.+.|+|..+.+....-.+. -.||+ .+..++.+ ..+++.
T Consensus 240 --~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 --SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp --SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred --CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 234668888 24 3566664 589999999999988733332 12455 34444433 445566
Q ss_pred ecCeEEEEecC-Cc-eee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 339 RNRTVAVWNFR-GE-LVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 339 sd~tI~iWn~~-Ge-l~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+++|.++|.. .+ +.. +.+ ... ....+.++|||+.++..+... ++|-++|..|||++
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~-~~~-----~~~d~~~~pdgr~~~va~~~s---------n~V~ViD~~t~kl~ 377 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEIS-AER-----FLHDGGLDGSHRYFITAANAR---------NKLVVIDTKEGKLV 377 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEE-CCS-----SEEEEEECTTSCEEEEEEGGG---------TEEEEEETTTTEEE
T ss_pred CCCeEEEEecCCCccceeeeee-ccc-----cccCceECCCCCEEEEEeCCC---------CeEEEEECCCCcEE
Confidence 66899999987 32 322 332 211 334678999999998887543 38999999999974
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.8e-06 Score=72.88 Aligned_cols=192 Identities=10% Similarity=0.039 Sum_probs=125.9
Q ss_pred CCCeEEeeCCCCeEEE-eecCCCeEEEEEeeCceEEEE-ecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 194 WPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYS-ISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt-~~~~ds~ykVWdL~~Ys~iys-Ls~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
.|--+-+|. +|++.+ ....++.+.+||..+...... ... ..+..+.++ +|.+ .+... .+ -|.+|+..++..
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l-~v~~~-~~--~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTV-YVTDF-NN--RVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCE-EEEET-TT--EEEEECTTCSCC
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCE-EEEcC-CC--EEEEEeCCCceE
Confidence 888899984 788888 778889999999877553321 222 478889998 7774 44443 33 467788776654
Q ss_pred EeEeeeccccCCcceeeeeecc-eeEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEE
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNE-KLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVW 346 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~e-kllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iW 346 (411)
. .+ ..+....+.-|...++ ++++.. .++.|.+||..+..........+..|..+.+-...++|++- .++.|.+|
T Consensus 100 ~-~~--~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 100 T-VL--PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp E-EC--CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred e-ee--ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 3 21 2233355667887755 466664 56789999988776655444445567665554445788887 57899999
Q ss_pred ecCCceeee-eccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 347 NFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 347 n~~Gel~~s-~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+..|..... ...+. .....|++++||.+.++...+. .|.+||..+++
T Consensus 177 ~~~~~~~~~~~~~~~-----~~p~~i~~d~~g~l~v~~~~~~----------~v~~~~~~~~~ 224 (270)
T 1rwi_B 177 EAESNNQVVLPFTDI-----TAPWGIAVDEAGTVYVTEHNTN----------QVVKLLAGSTT 224 (270)
T ss_dssp CTTTCCEEECCCSSC-----CSEEEEEECTTCCEEEEETTTS----------CEEEECTTCSC
T ss_pred ecCCCceEeecccCC-----CCceEEEECCCCCEEEEECCCC----------cEEEEcCCCCc
Confidence 999664443 22332 3667899999999998876654 67777765543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-05 Score=71.28 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=131.1
Q ss_pred ecccCCCCeEEeeCCCCeEEEe-------ecCCCeEEEEEeeCceEEE-Ee-----ccCceeEEEEe-C-CEEEEEEecC
Q 015220 189 SESLKWPGFVEFDDVNGKVLTY-------SAQDSIYKVFDLKNYTMLY-SI-----SDKNVQEIKIS-P-GIMLLIFTKA 253 (411)
Q Consensus 189 ~~~l~~PgfvEFDd~NGkiLt~-------~~~ds~ykVWdL~~Ys~iy-sL-----s~~~VqeIkIS-d-G~~Lai~q~t 253 (411)
...+.+|.=+-|| ++|++++. ...++.+.+||..+.+... .. ....+..+.++ + |.+++....
T Consensus 14 ~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~- 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR- 91 (314)
T ss_dssp ECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-
T ss_pred hccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-
Confidence 3567789999999 89999888 6678899999998877542 22 22578899998 6 775554432
Q ss_pred CCceeeEEEEecCCcEEeE-eeecc-ccCCcceeeeeecce-eEEeecC----------------ceeeEEEcccceEEE
Q 015220 254 SGHVPLKILSIEDGTVLKS-FNHLL-HRNKKVDFIEQFNEK-LLVKQEN----------------ENLQILDVRNFELTE 314 (411)
Q Consensus 254 ~~~ipiKIl~I~tG~~L~t-~~~LL-~h~K~I~FLE~~~ek-llIKQe~----------------~~LkI~dL~t~e~~~ 314 (411)
+ -|.+|+.+ |+...- ....- .+...+..|...+++ +++...+ ..|..||.. ++...
T Consensus 92 ~---~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 92 L---GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp T---EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred C---CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 2 47789988 886432 11110 122346778887665 4555433 467777765 66554
Q ss_pred eeccccCCCceEEEE----eec-eeEEEE-ecCeEEEEecC--Cc-----eeeeeccccccCCCCccceEEEcCCCCEEE
Q 015220 315 VSRTEFMTPSAFIFL----YEN-QLFLTF-RNRTVAVWNFR--GE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (411)
Q Consensus 315 v~~T~f~hpsAfifL----y~s-qlFlSf-sd~tI~iWn~~--Ge-----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~ii 381 (411)
+. +.+..|..+.+- ... .+|++- .++.|.+|+++ |. .+..+.+|.. -..+.+++++||.+.+
T Consensus 167 ~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~----~~p~~i~~d~~G~l~v 241 (314)
T 1pjx_A 167 VD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE----GGADGMDFDEDNNLLV 241 (314)
T ss_dssp EE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS----CEEEEEEEBTTCCEEE
T ss_pred ec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC----CCCCceEECCCCCEEE
Confidence 32 233456554443 222 567776 57899999986 54 3344544430 2467899999999999
Q ss_pred EEecCCCCCccccCCceEEEeeecceee
Q 015220 382 SYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 382 S~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+...+. .|.+||..||+.
T Consensus 242 ~~~~~~----------~i~~~d~~~g~~ 259 (314)
T 1pjx_A 242 ANWGSS----------HIEVFGPDGGQP 259 (314)
T ss_dssp EEETTT----------EEEEECTTCBSC
T ss_pred EEcCCC----------EEEEEcCCCCcE
Confidence 877665 899999888875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-05 Score=68.40 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=91.1
Q ss_pred CeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCc---e-eeEEEEecCCcEEeEeeeccccCCcceeeeee
Q 015220 215 SIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGH---V-PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~---i-piKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~ 289 (411)
..+.+||+.+.+.+..|+...+..+..| || ++++....... . ...||.+.+|+.. . +..+ ..+..+ +
T Consensus 152 ~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~---l~~~-~~~~~~--s 223 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-K---MFEK-VSFYAV--D 223 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-E---EEEE-ESEEEE--E
T ss_pred ceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-E---eccC-cceeeE--C
Confidence 5788999999887555553388899999 77 66655443221 2 3455555566643 3 2223 233333 6
Q ss_pred cce--eEEee-c-------CceeeEEEcccceEEEeeccccCCCceEEE-Eee-ceeEEEE-ecCeEEEEecC-Cceeee
Q 015220 290 NEK--LLVKQ-E-------NENLQILDVRNFELTEVSRTEFMTPSAFIF-LYE-NQLFLTF-RNRTVAVWNFR-GELVTS 355 (411)
Q Consensus 290 ~ek--llIKQ-e-------~~~LkI~dL~t~e~~~v~~T~f~hpsAfif-Ly~-sqlFlSf-sd~tI~iWn~~-Gel~~s 355 (411)
+++ ++... . ...|.+|| +++...+.. .++..+.. +.. ..++++. .+++++|| ++ |++.+-
T Consensus 224 pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g~~~~~ 297 (347)
T 2gop_A 224 SDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDGEIKPI 297 (347)
T ss_dssp ECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEEEEEETTEEEEEEEETTEEEEE-EESSSEEEE
T ss_pred CCCCEEEEEEccccCCccccceEEEEC--CCceEeccc---cCCcccCCccEEcCcEEEEEecCCcEEEE-EcCCceEEE
Confidence 555 43333 2 24688888 777766422 23333331 222 3466666 78899999 87 776443
Q ss_pred eccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+ .+.. .+..+.+++ .++++++.+.
T Consensus 298 ~-~~~~-----~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 298 A-KGRH-----WIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp E-CSSS-----EEEEEEESS--SEEEEEECSS
T ss_pred e-cCCC-----eEEeeeeeC--cEEEEEcCCC
Confidence 3 3333 678899999 7888888775
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-06 Score=75.37 Aligned_cols=194 Identities=10% Similarity=0.036 Sum_probs=113.5
Q ss_pred CCCeEEEeecCC---CeEEEEEeeCceEEEEeccC--ceeE-EEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 203 VNGKVLTYSAQD---SIYKVFDLKNYTMLYSISDK--NVQE-IKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 203 ~NGkiLt~~~~d---s~ykVWdL~~Ys~iysLs~~--~Vqe-IkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
++|+.|++...+ ..+.+||+.+.+.. .++.. .+.. +..| ||..|++..... -|.+|++.+|+...-+..
T Consensus 45 pdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~---~l~~~d~~~~~~~~~~~~ 120 (396)
T 3c5m_A 45 QDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTFGGFISTDERAFFYVKNEL---NLMKVDLETLEEQVIYTV 120 (396)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCBCTTTCEECTTSSEEEEEETTT---EEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCcEE-EeecCCCCccccceECCCCCEEEEEEcCC---cEEEEECCCCCcEEEEec
Confidence 688888776543 47888899888754 44433 2222 6778 888887766544 589999999986554221
Q ss_pred ccc---cCCccee-------------eeeeccee--EEe-----ecCceeeEEEcccceEEEeeccccCCCceEEEEe--
Q 015220 276 LLH---RNKKVDF-------------IEQFNEKL--LVK-----QENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-- 330 (411)
Q Consensus 276 LL~---h~K~I~F-------------LE~~~ekl--lIK-----Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-- 330 (411)
.-+ ..+.|-| ...+++.- .+. .....|.+||+.+++...+.... .....+.|-.
T Consensus 121 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~~sp~d 199 (396)
T 3c5m_A 121 DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT-AWLGHPIYRPFD 199 (396)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES-SCEEEEEEETTE
T ss_pred ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC-cccccceECCCC
Confidence 000 0000000 11222221 111 35668999999999988764221 1112222222
Q ss_pred eceeEEEEec------CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 331 ENQLFLTFRN------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 331 ~sqlFlSfsd------~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
.+.++++-.+ ..|.+|++.|..++.+..|. +...+..+.+||||+.|+..+.+.. ...++|.+||+
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~---~~~~~~~~~~spdg~~l~~~~~~~~-----~~~~~l~~~d~ 271 (396)
T 3c5m_A 200 DSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHA---EGESCTHEFWIPDGSAMAYVSYFKG-----QTDRVIYKANP 271 (396)
T ss_dssp EEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCC---TTEEEEEEEECTTSSCEEEEEEETT-----TCCEEEEEECT
T ss_pred CCEEEEEecCCCCCCCceEEEEECCCCceeEeeccC---CCccccceEECCCCCEEEEEecCCC-----CccceEEEEEC
Confidence 2234333222 46888888865555554432 1235677899999998777765531 12257999999
Q ss_pred cceee
Q 015220 405 MFVTC 409 (411)
Q Consensus 405 ~tGk~ 409 (411)
.+|+.
T Consensus 272 ~~g~~ 276 (396)
T 3c5m_A 272 ETLEN 276 (396)
T ss_dssp TTCCE
T ss_pred CCCCe
Confidence 99975
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.56 E-value=9.4e-06 Score=76.85 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=76.6
Q ss_pred CCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCC-------CceeeEEEEecCCcEEeEeeeccc---cCCc
Q 015220 214 DSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKAS-------GHVPLKILSIEDGTVLKSFNHLLH---RNKK 282 (411)
Q Consensus 214 ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~-------~~ipiKIl~I~tG~~L~t~~~LL~---h~K~ 282 (411)
|+.+.|||..+.+.+.++....--.+.+| ||.+|.+...-. ..-.|.+|++.|++++.++...-+ +.+.
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~ 109 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY 109 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred cCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence 67999999999999988876544499999 898888887421 234588999999999998653211 1245
Q ss_pred ceeeeeecce--eEEeec--CceeeEEEcccceEEE
Q 015220 283 VDFIEQFNEK--LLVKQE--NENLQILDVRNFELTE 314 (411)
Q Consensus 283 I~FLE~~~ek--llIKQe--~~~LkI~dL~t~e~~~ 314 (411)
..-|.+++++ +++... ++.|.+||+.+++...
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVE 145 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEE
Confidence 6678888776 466664 5789999999998765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-05 Score=70.20 Aligned_cols=182 Identities=8% Similarity=-0.021 Sum_probs=120.7
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc------CceeEEEEe-CCEEEEEEe--cC----------
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KNVQEIKIS-PGIMLLIFT--KA---------- 253 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~------~~VqeIkIS-dG~~Lai~q--~t---------- 253 (411)
..|--+.||. +|++++....++.+.+||.++.+....... ..+.++.++ +|.+++... .+
T Consensus 69 ~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~ 147 (296)
T 3e5z_A 69 HHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE 147 (296)
T ss_dssp SSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred CCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence 3466788875 889988888889999999988775433321 145578888 888766532 11
Q ss_pred CCceeeEEEEecC-CcEEeEeeeccccCCcceeeeeeccee-EE-eecCceeeEEEcc-cceE---EEeeccccCCCceE
Q 015220 254 SGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKL-LV-KQENENLQILDVR-NFEL---TEVSRTEFMTPSAF 326 (411)
Q Consensus 254 ~~~ipiKIl~I~t-G~~L~t~~~LL~h~K~I~FLE~~~ekl-lI-KQe~~~LkI~dL~-t~e~---~~v~~T~f~hpsAf 326 (411)
...-.-.||.+.. |+... +..+....+-+..++++- ++ .+.++.|.+||+. +|+. ..+-....+.|..+
T Consensus 148 ~~~~~~~l~~~~~~g~~~~----~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i 223 (296)
T 3e5z_A 148 MELPGRWVFRLAPDGTLSA----PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL 223 (296)
T ss_dssp CCSSSCEEEEECTTSCEEE----EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred ccCCCcEEEEECCCCCEEE----eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence 0001125666654 55432 334455567788887764 33 3456899999997 5655 22213344566665
Q ss_pred EEEeeceeEEEEecCeEEEEecCCceeeeeccccccCCCCccceEEE-cCCCCEEEEEecC
Q 015220 327 IFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCKA 386 (411)
Q Consensus 327 ifLy~sqlFlSfsd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~I-s~Dqd~iiS~~~d 386 (411)
.+=...+++++- ++.|.+|+++|+++..+..+.. ..+++. ++|++.|..++.+
T Consensus 224 ~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~------~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 224 RVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQT------TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp EEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSSC------CCEEEEESTTSCEEEEEETT
T ss_pred EECCCCCEEEEc-CCeEEEECCCCCEEEEEECCCC------ceeEEEECCCCCEEEEEcCC
Confidence 544444788888 9999999999999998887654 455666 7899988888765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-05 Score=70.08 Aligned_cols=197 Identities=10% Similarity=0.012 Sum_probs=125.7
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT 268 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~ 268 (411)
....+|.-+-||.-...++.....++.+.+||..+....+......+..+.++ +|.+++.... . --|.+|+..+|+
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~-~--~~i~~~d~~~g~ 101 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHG-L--RRLERQREPGGE 101 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETT-T--TEEEEECSTTCC
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecC-C--CeEEEEcCCCCc
Confidence 34677888889865555888888899999999998733344455589999998 7876554432 2 247889999998
Q ss_pred EEeEeeec-cccCCcceeeeeecceeEEee-------------------cCceeeEEEcccceEEEeeccccCCCceEEE
Q 015220 269 VLKSFNHL-LHRNKKVDFIEQFNEKLLVKQ-------------------ENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (411)
Q Consensus 269 ~L~t~~~L-L~h~K~I~FLE~~~ekllIKQ-------------------e~~~LkI~dL~t~e~~~v~~T~f~hpsAfif 328 (411)
...-+... -.....+.-+...+++.+... .+..|-.+|.. ++...+. .....|..+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~gi~~ 179 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI-RDRVKPNGLAF 179 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE-CCCSSEEEEEE
T ss_pred EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee-cCCCCCccEEE
Confidence 65432211 111223455777877765553 12355555554 5555432 33445554433
Q ss_pred EeeceeEEEE-ecCeEEEEecC--Cce---eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 329 LYENQLFLTF-RNRTVAVWNFR--GEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 329 Ly~sqlFlSf-sd~tI~iWn~~--Gel---~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
-...+++++- .+++|.+|+++ |.+ .+.++.+.. ..+.+++++||.+.++. +. .|.+|
T Consensus 180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-----~p~~i~~d~~G~l~v~~--~~----------~v~~~ 242 (296)
T 3e5z_A 180 LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG-----KTDGLRVDAGGLIWASA--GD----------GVHVL 242 (296)
T ss_dssp CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS-----CCCSEEEBTTSCEEEEE--TT----------EEEEE
T ss_pred CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC-----CCCeEEECCCCCEEEEc--CC----------eEEEE
Confidence 2233445555 56899999995 666 445532222 44679999999998887 43 78888
Q ss_pred eecceee
Q 015220 403 LLMFVTC 409 (411)
Q Consensus 403 ~i~tGk~ 409 (411)
|.. |++
T Consensus 243 ~~~-g~~ 248 (296)
T 3e5z_A 243 TPD-GDE 248 (296)
T ss_dssp CTT-SCE
T ss_pred CCC-CCE
Confidence 875 654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.6e-06 Score=83.48 Aligned_cols=176 Identities=11% Similarity=0.162 Sum_probs=114.4
Q ss_pred eEEEEEeeCce----EEEEeccC--ceeEEEEe-CCEEEEEEecCC--CceeeEEEEecCC--cEEeEeeeccccCC-cc
Q 015220 216 IYKVFDLKNYT----MLYSISDK--NVQEIKIS-PGIMLLIFTKAS--GHVPLKILSIEDG--TVLKSFNHLLHRNK-KV 283 (411)
Q Consensus 216 ~ykVWdL~~Ys----~iysLs~~--~VqeIkIS-dG~~Lai~q~t~--~~ipiKIl~I~tG--~~L~t~~~LL~h~K-~I 283 (411)
.+.+|++.+.+ +++...++ .+..+.+| ||..|++..... ...-|.+|++.+| +.... +..+.. ..
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~~~ 320 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA---LIPDLKAQW 320 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE---EECSSSSCE
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE---ecCCCCceE
Confidence 37788887654 67777665 48899999 898777766543 5677889999998 41344 333333 33
Q ss_pred eeeeeecceeEEeec----CceeeEEEcccc--eEEEeeccccCCCceEEE--EeeceeEEEE-ecCeEEEEecC--Cce
Q 015220 284 DFIEQFNEKLLVKQE----NENLQILDVRNF--ELTEVSRTEFMTPSAFIF--LYENQLFLTF-RNRTVAVWNFR--GEL 352 (411)
Q Consensus 284 ~FLE~~~ekllIKQe----~~~LkI~dL~t~--e~~~v~~T~f~hpsAfif--Ly~sqlFlSf-sd~tI~iWn~~--Gel 352 (411)
..+...++.+++... +.+|.+||+.++ +...+-+. ++..+.. ....+++++. .|++.+||..+ |..
T Consensus 321 ~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~---~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 321 DFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE---SKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp EEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC---CSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCE
T ss_pred EEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC---CCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCc
Confidence 344445666777664 456999999885 44443222 2222212 2244777777 78887777654 887
Q ss_pred eeeeccc-cccCCCCccceEEEcCCCC-EEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 353 VTSFEDH-LLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 353 ~~s~e~H-~~~~~~c~~n~i~Is~Dqd-~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
++.+..+ .. .+..+..+||++ +.++++... .-++|.+||+.||+.
T Consensus 398 ~~~l~~~~~~-----~v~~~~~s~d~~~l~~~~ss~~-------~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 398 AGAVSLPGIG-----SASGLSGRPGDRHAYLSFSSFT-------QPATVLALDPATAKT 444 (741)
T ss_dssp EEECBCSSSC-----EEEEEECCBTCSCEEEEEEETT-------EEEEEEEEETTTTEE
T ss_pred eeeccCCCCe-----EEEEeecCCCCCEEEEEEcCCC-------CCCEEEEEECCCCcE
Confidence 7777642 33 677788899987 556665542 226999999999885
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-05 Score=82.52 Aligned_cols=200 Identities=11% Similarity=0.012 Sum_probs=125.2
Q ss_pred eEEeeCCCCeEEEeecCCC-----eEEEEEeeCceEEE-EeccCceeEEEEe-CCEEEEEEecCCC-------------c
Q 015220 197 FVEFDDVNGKVLTYSAQDS-----IYKVFDLKNYTMLY-SISDKNVQEIKIS-PGIMLLIFTKASG-------------H 256 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds-----~ykVWdL~~Ys~iy-sLs~~~VqeIkIS-dG~~Lai~q~t~~-------------~ 256 (411)
.+.|- +||+-|++..+++ +++|||+.+.+.+. .+.+..+..+..| ||..|+....... .
T Consensus 129 ~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (710)
T 2xdw_A 129 GYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (710)
T ss_dssp EEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred EEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence 34555 8999998877654 99999999999775 4444457889999 8877776654433 2
Q ss_pred eeeEEEEecCCcEEeEeeecc-ccCCcceeeeeeccee--EEeec-----CceeeEEEccc------c--eEEEeecccc
Q 015220 257 VPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQFNEKL--LVKQE-----NENLQILDVRN------F--ELTEVSRTEF 320 (411)
Q Consensus 257 ipiKIl~I~tG~~L~t~~~LL-~h~K~I~FLE~~~ekl--lIKQe-----~~~LkI~dL~t------~--e~~~v~~T~f 320 (411)
.-|.+|++.||+......+-. .+...+.....++++- ++... ...|.+||+.+ + +...+.....
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~ 287 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE 287 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS
T ss_pred CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC
Confidence 338889999987322211111 1222244567788764 44443 57899999987 5 4555433222
Q ss_pred CCCceEEEEeeceeEEEEe----cCeEEEEecC-Cc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccc
Q 015220 321 MTPSAFIFLYENQLFLTFR----NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (411)
Q Consensus 321 ~hpsAfifLy~sqlFlSfs----d~tI~iWn~~-Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~ 393 (411)
... ..+.-..+.++++-. +..|.+|++. |+ -.+.+..|.. +..+..+..++++.+++++..+.
T Consensus 288 ~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~lv~~~~~~g------ 357 (710)
T 2xdw_A 288 GEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE---KDVLEWVACVRSNFLVLCYLHDV------ 357 (710)
T ss_dssp SCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---SCEEEEEEEETTTEEEEEEEETT------
T ss_pred cEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---CCeEEEEEEEcCCEEEEEEEECC------
Confidence 111 111122235555542 2369999998 54 2455555543 23566788888889999998774
Q ss_pred cCCceEEEeeecceee
Q 015220 394 EGNGKLFVSLLMFVTC 409 (411)
Q Consensus 394 ~~~gtI~i~~i~tGk~ 409 (411)
...|.+||+.+|++
T Consensus 358 --~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 358 --KNTLQLHDLATGAL 371 (710)
T ss_dssp --EEEEEEEETTTCCE
T ss_pred --EEEEEEEECCCCCE
Confidence 23567778778874
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=7.5e-05 Score=64.84 Aligned_cols=192 Identities=14% Similarity=0.127 Sum_probs=124.7
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
..|--+.+| ++|++.+....++.+.+||.+.-...+.+. ...+..+.+. +|.+++.... .. -|.+|+. +|+.
T Consensus 57 ~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~--~i~~~d~-~g~~ 131 (299)
T 2z2n_A 57 AKVMCLTIS-SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN-GN--RIGRITD-DGKI 131 (299)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETT-TT--EEEEECT-TCCE
T ss_pred CceeeEEEC-CCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecC-Cc--eEEEECC-CCCE
Confidence 567778888 588998888778888999987433334443 3478889988 6765444322 22 3567787 7776
Q ss_pred EeEeeeccccCCcceeeeeecc-eeEEee-cCceeeEEEcccceEEEee-ccccCCCceEEEEeeceeEEEE-ecCeEEE
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNE-KLLVKQ-ENENLQILDVRNFELTEVS-RTEFMTPSAFIFLYENQLFLTF-RNRTVAV 345 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~e-kllIKQ-e~~~LkI~dL~t~e~~~v~-~T~f~hpsAfifLy~sqlFlSf-sd~tI~i 345 (411)
..- . +-.....+..|...++ ++++.. .++.|..||. +++...+. .+....|..+.+-...++|++- .++.|.+
T Consensus 132 ~~~-~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 208 (299)
T 2z2n_A 132 REY-E-LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGR 208 (299)
T ss_dssp EEE-E-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEe-c-CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEE
Confidence 532 1 1123345677888765 556644 5689999999 88877642 2233344443332233778777 5789999
Q ss_pred EecCCceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 346 WNFRGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 346 Wn~~Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|++.|+... .+.. +......+++++||.+.++...+. .|.++|. +|+
T Consensus 209 ~~~~g~~~~~~~~~-----~~~~~~~i~~~~~g~l~v~~~~~~----------~i~~~d~-~g~ 256 (299)
T 2z2n_A 209 ITTSGEITEFKIPT-----PNARPHAITAGAGIDLWFTEWGAN----------KIGRLTS-NNI 256 (299)
T ss_dssp ECTTCCEEEEECSS-----TTCCEEEEEECSTTCEEEEETTTT----------EEEEEET-TTE
T ss_pred ECCCCcEEEEECCC-----CCCCceeEEECCCCCEEEeccCCc----------eEEEECC-CCc
Confidence 999887543 1222 234678999999999888865544 6777766 444
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.44 E-value=7.4e-06 Score=73.70 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=111.9
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
++..++..+.++++++| ..+.+..+.+. .+..+.++ +|.++++.. ... -|.+|+..+|+....+ ..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~~--~i~~~d~~~~~~~~~~---~~~~ 86 (333)
T 2dg1_A 16 KSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDV-FEG--NIFKINPETKEIKRPF---VSHK 86 (333)
T ss_dssp GGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEET-TTC--EEEEECTTTCCEEEEE---ECSS
T ss_pred CccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEEC-CCC--EEEEEeCCCCcEEEEe---eCCC
Confidence 34444444678888899 44556666644 67888888 787544433 333 4678999999876542 2345
Q ss_pred Ccceeeeeecce-eEEeecC-----ceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEEec-------CeEE
Q 015220 281 KKVDFIEQFNEK-LLVKQEN-----ENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTFRN-------RTVA 344 (411)
Q Consensus 281 K~I~FLE~~~ek-llIKQe~-----~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSfsd-------~tI~ 344 (411)
..+..|...+++ +++...+ ..|.+||..+++...+.... .+......++.. +++++-.. +.|-
T Consensus 87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~ 165 (333)
T 2dg1_A 87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY 165 (333)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-ccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence 678888888765 5665543 48999999998876432111 122233334433 67777652 4566
Q ss_pred EEecCCceeeeeccccccCCCCccceEEEcCCCCE-EEEEecCCCCCccccCCceEEEeeecc
Q 015220 345 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 345 iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~-iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.|+..|..++.+..+.. ..+.++++|||+. .++.+.+. .|.+||+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~-----~~~~i~~~~dg~~l~v~~~~~~----------~i~~~d~~~ 213 (333)
T 2dg1_A 166 YVSPDFRTVTPIIQNIS-----VANGIALSTDEKVLWVTETTAN----------RLHRIALED 213 (333)
T ss_dssp EECTTSCCEEEEEEEES-----SEEEEEECTTSSEEEEEEGGGT----------EEEEEEECT
T ss_pred EEeCCCCEEEEeecCCC-----cccceEECCCCCEEEEEeCCCC----------eEEEEEecC
Confidence 66666544445544443 5688999999984 45554444 888888863
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-07 Score=89.12 Aligned_cols=179 Identities=11% Similarity=0.029 Sum_probs=94.5
Q ss_pred CeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc---cC
Q 015220 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH---RN 280 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~---h~ 280 (411)
|..|.....|+.+..||.++.+.+-+.....+....+. +|.+++.. ... -.|..||.+||+.++...+-.+ ..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~-s~d--g~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPD-PND--GSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEEC-TTT--CCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEe-CCC--CEEEEEECCCCceeeeeeccCcccccc
Confidence 44455556788999999999999877665444433333 66544443 222 2478899999999887542211 11
Q ss_pred CcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEE-eeceeEEEEecCeEEEEecC-Cceeeeecc
Q 015220 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL-YENQLFLTFRNRTVAVWNFR-GELVTSFED 358 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL-y~sqlFlSfsd~tI~iWn~~-Gel~~s~e~ 358 (411)
.|+- ..++.+++...+..|.+||..+|+..- +.- .+....+. ....+|+...+++|..||.+ |+++-+++.
T Consensus 86 sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w---~~~-~~~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQ---TLS-SAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC--------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceE---ecCCEEEEEeCCCEEEEEECCCCcEEE---Eec-CCCcccccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 2211 135566777788899999999998764 111 11111111 33456666688999999998 998877664
Q ss_pred ccccCCCCccceEEEcCCC---CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 359 HLLWHPDCNTNNIYITSDQ---DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 359 H~~~~~~c~~n~i~Is~Dq---d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.. ....++.|. +.++.++.+ |.|..||..||+++
T Consensus 159 ~~~-------~~~~~~~~~~~~~~v~~~~~d----------g~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 159 FDY-------AASLPEDDVDYKMSHFVSNGD----------GLVVTVDSESGDVL 196 (369)
T ss_dssp EEE-------CCBCCCCCTTCCCCEEEEETS----------CEEEEECTTTCCEE
T ss_pred ccc-------cCccccCCccccceEEEECCC----------CEEEEEECCCCcEE
Confidence 321 223334432 445556655 48999999999874
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00067 Score=62.72 Aligned_cols=262 Identities=14% Similarity=0.123 Sum_probs=151.9
Q ss_pred eccceehhhhccccceeeecccccEEEEEeCCC---------CceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 015220 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTA---------DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (411)
Q Consensus 103 ~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~---------~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 173 (411)
.+++.|++....|.-.|||..||+.+=..+... ..+..++... ++.+++.+ .+ ..|.|--.
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~---~~--g~l~a~d~--- 120 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--GGHVYIGS---EK--AQVYALNT--- 120 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--TTEEEEEE---TT--SEEEEEET---
T ss_pred EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--CCEEEEEc---CC--CEEEEEEC---
Confidence 357888888888899999999999876666532 2233333333 23444422 11 23333221
Q ss_pred hhhhCCCCCCCcceee----cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ce------eEEEEe
Q 015220 174 YIRRGKPDAGFALFES----ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NV------QEIKIS 242 (411)
Q Consensus 174 ~i~~gk~~~~~~LF~~----~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~V------qeIkIS 242 (411)
.-|+ .+.+. .....|-. + +|++++ ...++.+..+|.++.+.+.+.... .+ ....+.
T Consensus 121 --~tG~-----~~W~~~~~~~~~~~p~~---~--~~~v~v-~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 187 (376)
T 3q7m_A 121 --SDGT-----VAWQTKVAGEALSRPVV---S--DGLVLI-HTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA 187 (376)
T ss_dssp --TTCC-----EEEEEECSSCCCSCCEE---E--TTEEEE-ECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE
T ss_pred --CCCC-----EEEEEeCCCceEcCCEE---E--CCEEEE-EcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE
Confidence 1222 22221 12223321 1 455554 456788889999999888665532 22 444555
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCC-------cc-eeeeeecceeEEeecCceeeEEEcccceEEE
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK-------KV-DFIEQFNEKLLVKQENENLQILDVRNFELTE 314 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K-------~I-~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~ 314 (411)
+|.+++-. ..-.+..++..||+.++++..-.+... .+ -...+.++.+++...+..|..+|..+|+..-
T Consensus 188 ~~~v~~g~----~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 188 FGAAVVGG----DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW 263 (376)
T ss_dssp TTEEEECC----TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE
T ss_pred CCEEEEEc----CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe
Confidence 77654421 123578899999999998653211100 01 1223457788888889999999999998764
Q ss_pred eeccccCCCceEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccc
Q 015220 315 VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (411)
Q Consensus 315 v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~ 393 (411)
- ..... ..-..+....+|+.-.++.+..+|.. |+++-+.+.... -......+ +++.|+.++.+
T Consensus 264 ~--~~~~~-~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~----~~~~~~~~--~~~~l~v~~~~------- 327 (376)
T 3q7m_A 264 K--RELGS-VNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH----RLLTSPVL--YNGNLVVGDSE------- 327 (376)
T ss_dssp E--ECCCC-EEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTT----SCCCCCEE--ETTEEEEECTT-------
T ss_pred e--ccCCC-CCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCC----CcccCCEE--ECCEEEEEeCC-------
Confidence 1 11111 22233455578887788999999998 998766552111 01122222 24556655544
Q ss_pred cCCceEEEeeecceeee
Q 015220 394 EGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 394 ~~~gtI~i~~i~tGk~~ 410 (411)
|.+..+|..||+.+
T Consensus 328 ---g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 328 ---GYLHWINVEDGRFV 341 (376)
T ss_dssp ---SEEEEEETTTCCEE
T ss_pred ---CeEEEEECCCCcEE
Confidence 48888888888864
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.0001 Score=64.07 Aligned_cols=193 Identities=12% Similarity=0.070 Sum_probs=125.0
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT 268 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~ 268 (411)
+..|.-+.+| ++|++.+....++.+.+||.......+.+. ...+..+.+. +|.+++.. ...+ -|..++.. |+
T Consensus 61 ~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~--~i~~~~~~-g~ 135 (300)
T 2qc5_A 61 DAKVMCLIVS-SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQ-LNGD--RIGKLTAD-GT 135 (300)
T ss_dssp TCCEEEEEEC-TTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEE-TTTT--EEEEECTT-SC
T ss_pred CCcceeEEEC-CCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEc-cCCC--eEEEECCC-CC
Confidence 4567888887 788998888878889999988333334554 3478899988 77655443 3222 45667776 77
Q ss_pred EEeEeeeccccCCcceeeeeec-ceeEEeec-CceeeEEEcccceEEEeec-cccCCCceEEEEeeceeEEEE-ecCeEE
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFN-EKLLVKQE-NENLQILDVRNFELTEVSR-TEFMTPSAFIFLYENQLFLTF-RNRTVA 344 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~-ekllIKQe-~~~LkI~dL~t~e~~~v~~-T~f~hpsAfifLy~sqlFlSf-sd~tI~ 344 (411)
...- . +-.....+..|...+ +++++... ++.|..||. +++...+.. ..+..|..+.+-...++|++- .++.|.
T Consensus 136 ~~~~-~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 136 IYEY-D-LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp EEEE-E-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred EEEc-c-CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence 6632 2 111334566677765 45666654 678999999 777665432 233345444333234788887 567899
Q ss_pred EEecCCceeee-eccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 345 VWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 345 iWn~~Gel~~s-~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+|+..|+.... +..+. .....+++++||.+.++...+. .|..+|. +|+
T Consensus 213 ~~~~~g~~~~~~~~~~~-----~~~~~i~~d~~g~l~v~~~~~~----------~i~~~~~-~g~ 261 (300)
T 2qc5_A 213 RITTTGEISEYDIPTPN-----ARPHAITAGKNSEIWFTEWGAN----------QIGRITN-DNT 261 (300)
T ss_dssp EECTTCCEEEEECSSTT-----CCEEEEEECSTTCEEEEETTTT----------EEEEECT-TSC
T ss_pred EEcCCCcEEEEECCCCC-----CCceEEEECCCCCEEEeccCCC----------eEEEECC-CCc
Confidence 99998886552 33332 2567899999999888875443 6666665 443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-05 Score=69.40 Aligned_cols=188 Identities=11% Similarity=0.048 Sum_probs=114.3
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEE--EEeccCceeEEEEeCCEEEEEEe---------------------------c
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKISPGIMLLIFT---------------------------K 252 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~~VqeIkISdG~~Lai~q---------------------------~ 252 (411)
.++|+.|++...+..+.+||+.+.+.. +..... -..+|..|++.. .
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 89 STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 578999999999999999999987643 332222 112444444321 1
Q ss_pred CCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec-ce--eEEeecC------ceeeEEEcccceEEEeeccccCCC
Q 015220 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EK--LLVKQEN------ENLQILDVRNFELTEVSRTEFMTP 323 (411)
Q Consensus 253 t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~-ek--llIKQe~------~~LkI~dL~t~e~~~v~~T~f~hp 323 (411)
.....-|.+|++.+|+...- ..+...+..+..++ ++ ++..+++ ..|.+||+.+++...+.. ..+
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~ 236 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVI----HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE---HAE 236 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEE----EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC---CCT
T ss_pred CCCcceEEEEECCCCcEEee----ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec---cCC
Confidence 14556788999999987654 34556677777777 33 4444433 468899998887665432 122
Q ss_pred -ceEEEEeec---e-eEEEEec-----CeEEEEecC-CceeeeeccccccCCCCccceEEEcC-CCCEEEEEecCCC---
Q 015220 324 -SAFIFLYEN---Q-LFLTFRN-----RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADS--- 388 (411)
Q Consensus 324 -sAfifLy~s---q-lFlSfsd-----~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~-Dqd~iiS~~~d~~--- 388 (411)
..+..+..+ + ++++..+ ++|.+||+. |++.. +..... + + +..|| ||+++++.+.+.+
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~----~--~-~~~s~~dg~~l~~~~~~~p~~~ 308 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMPP----C--S-HLMSNFDGSLMVGDGCDAPVDV 308 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECCS----E--E-EEEECSSSSEEEEEECCC----
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCCC----C--C-CCccCCCCceEEEecCCcceee
Confidence 234344444 3 4433332 459999998 65433 221111 1 2 78889 9999988665421
Q ss_pred CC---ccccCCceEEEeeecceee
Q 015220 389 DD---PLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 389 ~~---~~~~~~gtI~i~~i~tGk~ 409 (411)
.+ ....+.+.|.+||+.+|++
T Consensus 309 ~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 309 ADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ------CCCCCCEEEEEETTTTBC
T ss_pred ccccccccCCCCcEEEEecccCce
Confidence 00 0112457999999999875
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.7e-06 Score=74.68 Aligned_cols=152 Identities=8% Similarity=0.041 Sum_probs=100.6
Q ss_pred eCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE-eecccc
Q 015220 242 SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEF 320 (411)
Q Consensus 242 SdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f 320 (411)
|||.+|+.... + --|.+||.+||++++++.. +....+..+.+.+++.++.+.++.++.||. +|+..- ......
T Consensus 3 ~~~~~lv~~~~-~--~~v~~~d~~tG~~~w~~~~--~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~ 76 (276)
T 3no2_A 3 SPQHLLVGGSG-W--NKIAIINKDTKEIVWEYPL--EKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAG 76 (276)
T ss_dssp CCCEEEEECTT-C--SEEEEEETTTTEEEEEEEC--CTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTT
T ss_pred CCCcEEEeeCC-C--CEEEEEECCCCeEEEEeCC--CccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCC
Confidence 47776666433 3 3456999999999999652 221467778888887766688999999999 776554 322111
Q ss_pred CCCceEEEEeeceeEEEEe--cCeEEEEecCCceeeeeccccc-cCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 321 MTPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 321 ~hpsAfifLy~sqlFlSfs--d~tI~iWn~~Gel~~s~e~H~~-~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
.+.....++...+++++.+ ++.|..++..|+++.++.-... -.+.-....+..++||+++++.+.+.
T Consensus 77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~---------- 146 (276)
T 3no2_A 77 CEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS---------- 146 (276)
T ss_dssp CEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT----------
T ss_pred ccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC----------
Confidence 1222333444557788775 4677777888999987752110 00001345678899999999887654
Q ss_pred eEEEeeecceeee
Q 015220 398 KLFVSLLMFVTCK 410 (411)
Q Consensus 398 tI~i~~i~tGk~~ 410 (411)
.|..||.. ||.+
T Consensus 147 ~v~~~d~~-G~~~ 158 (276)
T 3no2_A 147 EVREIAPN-GQLL 158 (276)
T ss_dssp EEEEECTT-SCEE
T ss_pred EEEEECCC-CCEE
Confidence 89999987 8865
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0002 Score=64.91 Aligned_cols=198 Identities=7% Similarity=0.044 Sum_probs=125.8
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
..+|.=.-||+.++.++.....++.+..||..+.+...--....+..+.++ +|.+++ .. .. -|.+|+.++|+..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v-~~--~~--~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVA-TI--GT--KFCALNWKEQSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEE-EE--TT--EEEEEETTTTEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEE-EE--CC--eEEEEECCCCcEE
Confidence 345556667888899999988899999999988765322235688999998 777444 33 22 4678999999865
Q ss_pred eEeeecc-ccCCcceeeeeeccee-EEeec----------CceeeEEEccc-ceEEEeeccccCCCceEEEEeec-eeEE
Q 015220 271 KSFNHLL-HRNKKVDFIEQFNEKL-LVKQE----------NENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN-QLFL 336 (411)
Q Consensus 271 ~t~~~LL-~h~K~I~FLE~~~ekl-lIKQe----------~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s-qlFl 336 (411)
.-....- .....++-+...+++. ++..- ...-.||-+.. ++...+. +.+..|..+.+-... .+|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EEESBEEEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-eccccccceEEcCCCCEEEE
Confidence 3221110 1123355677777655 44331 12345665543 4444332 333345444333222 5677
Q ss_pred EE-ecCeEEEEecC---Cce-----eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 337 TF-RNRTVAVWNFR---GEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 337 Sf-sd~tI~iWn~~---Gel-----~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+- .+++|.+|+++ |.+ +.++.++.. ....+++++||.+.++..... .|..||..||
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-----~p~g~~~d~~G~lwva~~~~~----------~v~~~d~~tG 230 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-----IPDGMCIDAEGKLWVACYNGG----------RVIRLDPVTG 230 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGC-----EEEEEEEBTTSCEEEEEETTT----------EEEEECTTTC
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCC-----CCCeeEECCCCCEEEEEcCCC----------EEEEEcCCCc
Confidence 76 57899999873 554 334444433 557899999999999877654 8999999999
Q ss_pred eee
Q 015220 408 TCK 410 (411)
Q Consensus 408 k~~ 410 (411)
+++
T Consensus 231 ~~~ 233 (297)
T 3g4e_A 231 KRL 233 (297)
T ss_dssp CEE
T ss_pred eEE
Confidence 875
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00019 Score=69.26 Aligned_cols=179 Identities=11% Similarity=0.081 Sum_probs=109.8
Q ss_pred CCCeEEEEEeeCceEEEEecc---------CceeEEEEe-CCEEEEEEecC-CCceeeEEEEecCCcEEeE-eee-----
Q 015220 213 QDSIYKVFDLKNYTMLYSISD---------KNVQEIKIS-PGIMLLIFTKA-SGHVPLKILSIEDGTVLKS-FNH----- 275 (411)
Q Consensus 213 ~ds~ykVWdL~~Ys~iysLs~---------~~VqeIkIS-dG~~Lai~q~t-~~~ipiKIl~I~tG~~L~t-~~~----- 275 (411)
.++++-|||..+.+.+.+|.- ..-..+.+| ||..|++.+.. .+. |.++| +||+++.+ +..
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~--v~viD-~t~~~~~~~i~~~~~~~ 171 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA--VGLVV-QGGSSDDQLLSSPTCYH 171 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe--EEEEE-CCCCEEeEEcCCCceEE
Confidence 367899999999999987752 234578999 99999998754 343 66789 99999888 431
Q ss_pred ccccCCcceeeeee---------------------------------------cceeEEeecCceeeEEEcccceEEEee
Q 015220 276 LLHRNKKVDFIEQF---------------------------------------NEKLLVKQENENLQILDVRNFELTEVS 316 (411)
Q Consensus 276 LL~h~K~I~FLE~~---------------------------------------~ekllIKQe~~~LkI~dL~t~e~~~v~ 316 (411)
+.+..+. -|+... ..++++-..+..+-+.|+.+++...+.
T Consensus 172 ~~~~~~~-~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~ 250 (373)
T 2mad_H 172 IHPGAPS-TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA 250 (373)
T ss_pred EEeCCCc-eEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEee
Confidence 0111000 011111 122222223345666666554322111
Q ss_pred c---------cccCCCceEEEEe----eceeEEEEe----------cCeEEEEecC-CceeeeeccccccCCCCccceEE
Q 015220 317 R---------TEFMTPSAFIFLY----ENQLFLTFR----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY 372 (411)
Q Consensus 317 ~---------T~f~hpsAfifLy----~sqlFlSfs----------d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~ 372 (411)
. .....|.....++ .+++|++.. +++|.+.|+. ++.++++.--. ....++
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~------~p~~i~ 324 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH------DVDAIS 324 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC------CcCeEE
Confidence 0 0111343322233 237787764 3589999999 89989884211 357899
Q ss_pred EcCCCC-EEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 373 ITSDQD-LIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 373 Is~Dqd-~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+||||+ ++++..-. .|+|-++|..|||.+
T Consensus 325 ~s~Dg~~~l~v~~~~---------~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 325 VAQDGGPDLYALSAG---------TEVLHIYDAGAGDQD 354 (373)
T ss_pred ECCCCCeEEEEEcCC---------CCeEEEEECCCCCEE
Confidence 999999 77776532 149999999999975
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00018 Score=63.54 Aligned_cols=193 Identities=10% Similarity=0.055 Sum_probs=119.3
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEE-ec------cCceeEEEEe-CCEEEEEEecCC----------
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-IS------DKNVQEIKIS-PGIMLLIFTKAS---------- 254 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iys-Ls------~~~VqeIkIS-dG~~Lai~q~t~---------- 254 (411)
..|--+.+|.-+|++++....+ .+.+||.. .+.... .. ...+..+.++ +|.+++......
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 3466777876558888876644 57779988 554322 21 1257889998 787655543321
Q ss_pred --CceeeEEEEecCCcEEeEeeeccccCCcceeeeee----cce--eEEee-cCceeeEEEcc-cceEEE--eecccc--
Q 015220 255 --GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF----NEK--LLVKQ-ENENLQILDVR-NFELTE--VSRTEF-- 320 (411)
Q Consensus 255 --~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~----~ek--llIKQ-e~~~LkI~dL~-t~e~~~--v~~T~f-- 320 (411)
...-|..++.. |+....+ .+....+-+... +++ +++.. .++.|.+||+. +++... +-.+.-
T Consensus 149 ~~~~~~l~~~~~~-g~~~~~~----~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQMIQVD----TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp SSSCEEEEEECTT-SCEEEEE----EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cCCCCeEEEECCC-CCEEEec----cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 11234445544 6654432 222334667777 664 56664 57899999997 555321 111111
Q ss_pred --CCCceEEEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEE-EEEecCCCCCccccC
Q 015220 321 --MTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEG 395 (411)
Q Consensus 321 --~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i-iS~~~d~~~~~~~~~ 395 (411)
..|..+.+-...+++++- .++.|.+||++ |+++.++..+.. ....+++++||+.| ++...+
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-----~~~~i~~~~dg~~l~v~~~~~--------- 289 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-----KPSNLHFKPQTKTIFVTEHEN--------- 289 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-----CEEEEEECTTSSEEEEEETTT---------
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC-----CceeEEECCCCCEEEEEeCCC---------
Confidence 345443322233788876 67899999999 998888876644 67889999999944 544433
Q ss_pred CceEEEeeecce
Q 015220 396 NGKLFVSLLMFV 407 (411)
Q Consensus 396 ~gtI~i~~i~tG 407 (411)
|.|..+++.+.
T Consensus 290 -~~l~~~~~~~~ 300 (314)
T 1pjx_A 290 -NAVWKFEWQRN 300 (314)
T ss_dssp -TEEEEEECSSC
T ss_pred -CeEEEEeCCCC
Confidence 48888887653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.9e-05 Score=68.71 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=121.2
Q ss_pred CCCCeEEeeCCCCeEEEeec--CCCeEEEEEeeCceEEEEec-------c--CceeEEEEe-CCEEEEEEecC--CCcee
Q 015220 193 KWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS-------D--KNVQEIKIS-PGIMLLIFTKA--SGHVP 258 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~--~ds~ykVWdL~~Ys~iysLs-------~--~~VqeIkIS-dG~~Lai~q~t--~~~ip 258 (411)
.+|.-|.++ ++|++++..+ .++..+||.+.+.+.. ... . ..+..|.++ +|.++++.... ...--
T Consensus 17 ~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 689999997 4789988854 2333788888755533 221 1 278999999 68866655432 00123
Q ss_pred eEEEEecCCcEEeEeeec---cccCCcceeeeeec--ceeEEee----cCceeeEEEcccceEEEeecc-ccCCCc--e-
Q 015220 259 LKILSIEDGTVLKSFNHL---LHRNKKVDFIEQFN--EKLLVKQ----ENENLQILDVRNFELTEVSRT-EFMTPS--A- 325 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~L---L~h~K~I~FLE~~~--ekllIKQ----e~~~LkI~dL~t~e~~~v~~T-~f~hps--A- 325 (411)
|.+|++.||++++++.+- ..+...++-+.+.+ ..++|.. .++.|.+||+.+++..++... ..+.|. .
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 788999999998876521 12223456677774 4567775 478999999999988874321 011111 1
Q ss_pred ----------------------EEEEeec----eeEEEEecCeEEEEecCCc-----------eee--eeccccccCCCC
Q 015220 326 ----------------------FIFLYEN----QLFLTFRNRTVAVWNFRGE-----------LVT--SFEDHLLWHPDC 366 (411)
Q Consensus 326 ----------------------fifLy~s----qlFlSfsd~tI~iWn~~Ge-----------l~~--s~e~H~~~~~~c 366 (411)
.--++.+ .+|++=.++. ++|.++-+ +.. ...++.+
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g----- 248 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKP----- 248 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECC-----
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCC-----
Confidence 1112222 2333332221 44544311 111 1223444
Q ss_pred ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
..+.+++++||.+.++...+. +|.+||..+|+.
T Consensus 249 ~pdgia~d~~G~l~va~~~~~----------~V~~~d~~~G~~ 281 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLAHS----------AIGVITSADRAY 281 (343)
T ss_dssp SCSCEEECTTCCEEEEEGGGT----------EEEEEETTTTEE
T ss_pred CCceEEECCCCCEEEEccCCC----------eEEEEECCCCCE
Confidence 567899999999999877665 999999877774
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.9e-05 Score=76.39 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=124.2
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce-------------EEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------------MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-------------~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~ 263 (411)
-.......|.+.+.++ ..++||++++-. .+..+.. |..+.. ||..|++. .. .-|++|+
T Consensus 42 lLais~~~gll~a~~~--~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f-d~~~L~v~--~~--~~l~v~d 112 (388)
T 1xip_A 42 NLDISNSKSLFVAASG--SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF-HGDQVLVS--TR--NALYSLD 112 (388)
T ss_dssp CEEEETTTTEEEEEET--TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE-ETTEEEEE--ES--SEEEEEE
T ss_pred EEEEcCCCCEEEEeCC--CEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE-CCCEEEEE--cC--CcEEEEE
Confidence 3455566666555444 488899987533 3455555 999999 99999998 22 4699999
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEEecC
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTFRNR 341 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSfsd~ 341 (411)
+.+-....+ .-.+++++.-+-..+..+++-..+..|.+||+.++.... +...+.+++.+ ++.+...|+
T Consensus 113 v~sl~~~~~---~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG~~vg~~dg 182 (388)
T 1xip_A 113 LEELSEFRT---VTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQLAVLLKDR 182 (388)
T ss_dssp SSSTTCEEE---EEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSEEEEEETTS
T ss_pred chhhhccCc---cceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCceEEEEcCC
Confidence 887664443 223456666555556568888999999999999888754 33567788877 767777999
Q ss_pred eEEEEecCCce---eeee------ccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 342 TVAVWNFRGEL---VTSF------EDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 342 tI~iWn~~Gel---~~s~------e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
++++|++.|.. .+++ ++|.+ | ++.+-.|.-.+++.++++|.....
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~-~-~~~V~sI~wl~~~~flv~y~~~~~ 236 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPV-E-EYSPLSVTILSPQDFLAVFGNVIS 236 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCT-T-TSEEEEEEESSSSEEEEEEECCCC
T ss_pred cEEEEcCCCccccccceecCCcccccccC-C-CeeEEEEEEecCCeEEEEEcCCCC
Confidence 99999999655 6677 54322 1 358889999999999999999764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00046 Score=59.91 Aligned_cols=192 Identities=14% Similarity=0.078 Sum_probs=123.3
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCC
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG 267 (411)
...|--+-+|. +|++.+....++.+.+||.. .+.. +.+.. ..+..+.++ +|.+++. ....+ -|..++.. |
T Consensus 19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~-~~~~~--~v~~~d~~-g 92 (300)
T 2qc5_A 19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFT-ENGAN--KIGKLSKK-G 92 (300)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEE-ETTTT--EEEEECTT-S
T ss_pred CCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEE-ecCCC--eEEEECCC-C
Confidence 34566666664 78999988888999999988 4433 34443 478889888 6765443 33233 35677777 7
Q ss_pred cEEeEeeeccccCCcceeeeeec-ceeEEeec-CceeeEEEcccceEEEeecc-ccCCCceEEEEeeceeEEEE-ecCeE
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQE-NENLQILDVRNFELTEVSRT-EFMTPSAFIFLYENQLFLTF-RNRTV 343 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~-ekllIKQe-~~~LkI~dL~t~e~~~v~~T-~f~hpsAfifLy~sqlFlSf-sd~tI 343 (411)
+.. .+.. -.....+.-|.+.+ +.+++... ++.|..||.. ++....... ...+|..+.+-...++|++- .++.|
T Consensus 93 ~~~-~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 93 GFT-EYPL-PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp CEE-EEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred CeE-EecC-CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 763 3221 11234566777775 45666654 6789999998 776654222 33345444433334788877 47899
Q ss_pred EEEecCCceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 344 AVWNFRGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 344 ~iWn~~Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
..|+..|+... .+..+. .....+++++||.+.++..... .|.++|. +|+
T Consensus 170 ~~~~~~g~~~~~~~~~~~-----~~~~~i~~d~~g~l~v~~~~~~----------~i~~~~~-~g~ 219 (300)
T 2qc5_A 170 GRITNTGKLEEYPLPTNA-----AAPVGITSGNDGALWFVEIMGN----------KIGRITT-TGE 219 (300)
T ss_dssp EEECTTCCEEEEECSSTT-----CCEEEEEECTTSSEEEEETTTT----------EEEEECT-TCC
T ss_pred EEECCCCcEEEeeCCCCC-----CCcceEEECCCCCEEEEccCCC----------EEEEEcC-CCc
Confidence 99999888664 222222 3678899999999988765443 6666666 554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00067 Score=65.42 Aligned_cols=190 Identities=9% Similarity=0.033 Sum_probs=117.6
Q ss_pred eEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCc-------eeeEEEEecCCcEEeEeeec-ccc---CCcc
Q 015220 216 IYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGH-------VPLKILSIEDGTVLKSFNHL-LHR---NKKV 283 (411)
Q Consensus 216 ~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~-------ipiKIl~I~tG~~L~t~~~L-L~h---~K~I 283 (411)
++-|+|+.+.+.+-+|.--..-.+.+| ||..|.+.+.-.++ -.+.++|+.|++++.++... .++ ....
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p 127 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS 127 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 889999999999999985544599999 99999998753222 34789999999999886421 111 1234
Q ss_pred eeeeeecce--eEEeec--CceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecCCcee----
Q 015220 284 DFIEQFNEK--LLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFRGELV---- 353 (411)
Q Consensus 284 ~FLE~~~ek--llIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~Gel~---- 353 (411)
.-+.+++++ +++... ++.|.++| .+++... +....|..+.+.... +.|+++ .|+++.+|+..|..+
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~ 203 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe---EEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEe
Confidence 467788764 466653 57899999 9998765 312233333332222 445555 555555555533322
Q ss_pred ----------------------------------------------eeec------cccccCCCCccceEEEcCCCCEEE
Q 015220 354 ----------------------------------------------TSFE------DHLLWHPDCNTNNIYITSDQDLII 381 (411)
Q Consensus 354 ----------------------------------------------~s~e------~H~~~~~~c~~n~i~Is~Dqd~ii 381 (411)
++++ ....|.|.- ...+++++||+.+.
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g-~~~~~~s~d~~~ly 282 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIY 282 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCc-eEeEEECCCCCEEE
Confidence 1111 011112221 12367888988888
Q ss_pred EEecCCCCCccccCCceEEEeeecceeee
Q 015220 382 SYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 382 S~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..+..........+.++|-+.|..|+|.+
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 77654322222234578999999999874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00092 Score=68.73 Aligned_cols=242 Identities=11% Similarity=0.102 Sum_probs=138.2
Q ss_pred eEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCe-
Q 015220 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI- 216 (411)
Q Consensus 138 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~- 216 (411)
.+.++-++...+.|.+++-...++-..|+ +-++.-|+.-.. .++...... +.|- +|+-|.|...+..
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~-----v~dl~tg~~~~~--~~~~~k~~~---~~Ws--Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIH-----LMDVESKQPLET--PLKDVKFSG---ISWL--GNEGFFYSSYDKPD 197 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEE-----EEETTTCSEEEE--EEEEEESCC---CEEE--TTTEEEEEESSCCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEE-----EEECCCCCCCcc--ccCCceecc---EEEe--CCCEEEEEEecCcc
Confidence 56666677766666654433333222222 223333332000 111111223 3455 6677777776643
Q ss_pred ------------EEEEEeeCce----EEEEecc-C--ceeEEEEe-CCEEEEEEecCCC-ceeeEEEEecCCc-EEeEee
Q 015220 217 ------------YKVFDLKNYT----MLYSISD-K--NVQEIKIS-PGIMLLIFTKASG-HVPLKILSIEDGT-VLKSFN 274 (411)
Q Consensus 217 ------------ykVWdL~~Ys----~iysLs~-~--~VqeIkIS-dG~~Lai~q~t~~-~ipiKIl~I~tG~-~L~t~~ 274 (411)
+.+|++.+-+ ++++-.+ + .+..+..| ||..|++...... ..-+.++++.+++ ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-- 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT-- 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE--
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE--
Confidence 7778887643 6788776 3 36788889 9998887765443 3478889999885 3333
Q ss_pred eccccCCcc-eeeeeecceeEEeec----CceeeEEEcccceE---EEeeccccCCCceEEE--EeeceeEEEEecC---
Q 015220 275 HLLHRNKKV-DFIEQFNEKLLVKQE----NENLQILDVRNFEL---TEVSRTEFMTPSAFIF--LYENQLFLTFRNR--- 341 (411)
Q Consensus 275 ~LL~h~K~I-~FLE~~~ekllIKQe----~~~LkI~dL~t~e~---~~v~~T~f~hpsAfif--Ly~sqlFlSfsd~--- 341 (411)
+..+.... ..+.-.++.+++... +.+|..+|+.+++. ..+-+ |+...+. ...+.|+++..++
T Consensus 276 -l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~----~~~~~~~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 276 -VQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP----ERQQVLTVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp -EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC----CCSSCEEEEEETTEEEEEEEETTEE
T ss_pred -EeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec----CCCCEEEEEEECCEEEEEEEECCee
Confidence 33333332 335555677776653 36789999998765 33222 2222222 2233566666444
Q ss_pred eEEEEecCCceeeeecc-ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 342 TVAVWNFRGELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 342 tI~iWn~~Gel~~s~e~-H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.|.+|+++|...+.+.- +.. .+..+..++|++.++....+- ..-++|..+|+.+|+.
T Consensus 351 ~l~~~d~~g~~~~~l~~p~~~-----~~~~~~~~~d~~~l~~~~ss~------~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 351 RVEQFDYEGKRVREVALPGLG-----SVSGFNGKHDDPALYFGFENY------AQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEECTTSCEEEEECCSSSS-----EEEECCCCTTCSCEEEEEECS------SSCCEEEEECTTTCCE
T ss_pred EEEEEECCCCeeEEeecCCCc-----eEEeeecCCCCCEEEEEecCC------CCCCEEEEEECCCCeE
Confidence 79999999876665532 222 344445567877655444332 1226999999998875
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00019 Score=73.18 Aligned_cols=187 Identities=9% Similarity=-0.001 Sum_probs=113.4
Q ss_pred CCCeEEEeecCCC---eEEEEEee--CceEEEEeccC---------ceeEEEEe-CCEEEEEEecCCC--ceeeEEEEec
Q 015220 203 VNGKVLTYSAQDS---IYKVFDLK--NYTMLYSISDK---------NVQEIKIS-PGIMLLIFTKASG--HVPLKILSIE 265 (411)
Q Consensus 203 ~NGkiLt~~~~ds---~ykVWdL~--~Ys~iysLs~~---------~VqeIkIS-dG~~Lai~q~t~~--~ipiKIl~I~ 265 (411)
++|+-+.+...+. ...+|-+. +.+ ...|.+. .+..+++| ||..||+...... ..-|+||++.
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 4577666665543 35667665 232 2333321 48899999 9998887766554 4789999999
Q ss_pred CCcEE-eEeeeccccCCcceeeeeeccee--EEeecCc-------------eeeEEEcccceE--EEeeccccCCCceEE
Q 015220 266 DGTVL-KSFNHLLHRNKKVDFIEQFNEKL--LVKQENE-------------NLQILDVRNFEL--TEVSRTEFMTPSAFI 327 (411)
Q Consensus 266 tG~~L-~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~-------------~LkI~dL~t~e~--~~v~~T~f~hpsAfi 327 (411)
||+.+ .. .+...+ ...+.-++|+- +..+.+. .|.+||+.+++. ..+ -+.-.++..+.
T Consensus 156 tg~~~~~~---~~~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv-~~~~~~~~~~~ 230 (695)
T 2bkl_A 156 SGEWSKVD---VIEGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV-HERTGDPTTFL 230 (695)
T ss_dssp TCCBCSSC---CBSCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE-ECCCCCTTCEE
T ss_pred CCCCcCCc---ccCccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE-EecCCCCEEEE
Confidence 99986 32 222221 14567777753 4444433 399999999862 222 13445667777
Q ss_pred EEeec----eeEEEEecC----eEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceE
Q 015220 328 FLYEN----QLFLTFRNR----TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKL 399 (411)
Q Consensus 328 fLy~s----qlFlSfsd~----tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI 399 (411)
.+..+ .++++-.++ .|.+|+..+..++.+..|.. .... .+++||+++++ +..+ .++++|
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-----~~~~-~~~~~g~l~~~-s~~~------~~~~~l 297 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG-----AKYE-VHAWKDRFYVL-TDEG------APRQRV 297 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS-----CCEE-EEEETTEEEEE-ECTT------CTTCEE
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC-----ceEE-EEecCCcEEEE-ECCC------CCCCEE
Confidence 77776 345554444 56666654334556666654 2222 23478884444 3322 356899
Q ss_pred EEeeeccee
Q 015220 400 FVSLLMFVT 408 (411)
Q Consensus 400 ~i~~i~tGk 408 (411)
.+||+.+|+
T Consensus 298 ~~~d~~~~~ 306 (695)
T 2bkl_A 298 FEVDPAKPA 306 (695)
T ss_dssp EEEBTTBCS
T ss_pred EEEeCCCCC
Confidence 999998875
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0012 Score=61.08 Aligned_cols=192 Identities=6% Similarity=-0.067 Sum_probs=117.0
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
+|.-+-||..++.++.....++.+.+||.++.+...--.++.+..+..+ +|.+++... . -|.+|+..+|+...-
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~---~--gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD---D--GLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET---T--EEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEEC---C--CEEEEECCCCcEEEE
Confidence 3444567877788888888888999999988664321224688999888 888766542 2 288899999986432
Q ss_pred eeecc-ccCCcceeeeeeccee-EEeecC-------ceeeEEEcccceEEEeeccccCCCceEEEEee-ceeEEEE-ecC
Q 015220 273 FNHLL-HRNKKVDFIEQFNEKL-LVKQEN-------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTF-RNR 341 (411)
Q Consensus 273 ~~~LL-~h~K~I~FLE~~~ekl-lIKQe~-------~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~-sqlFlSf-sd~ 341 (411)
....- .....++-+...+++- ++...+ ..|-.+| +++...+.. ....|....+-.. +.+|++- .++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCcccCCeEEcCCCCEEEEEECCCC
Confidence 11100 1123466677777764 554322 3455555 676655422 2223333222111 2466665 467
Q ss_pred eEEEEecC---C-ce-----eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 342 TVAVWNFR---G-EL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 342 tI~iWn~~---G-el-----~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.|.+|+++ | ++ +.++.++.. ..+.+++++||.+.++...+. .|..||. +|+.
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-----~p~gi~~d~~G~lwva~~~~~----------~v~~~d~-~g~~ 262 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKG-----GMDGSVCDAEGHIWNARWGEG----------AVDRYDT-DGNH 262 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSS-----EEEEEEECTTSCEEEEEETTT----------EEEEECT-TCCE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCC-----CCCeeEECCCCCEEEEEeCCC----------EEEEECC-CCCE
Confidence 99999985 6 43 333433322 446799999999998865443 7888887 5654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0003 Score=72.43 Aligned_cols=188 Identities=16% Similarity=0.065 Sum_probs=118.6
Q ss_pred CCCeEEEeecCCCe---EEEEEeeCc----eEEEE------eccC---ceeEEEEe-CCEEEEEEecCCCc--eeeEEEE
Q 015220 203 VNGKVLTYSAQDSI---YKVFDLKNY----TMLYS------ISDK---NVQEIKIS-PGIMLLIFTKASGH--VPLKILS 263 (411)
Q Consensus 203 ~NGkiLt~~~~ds~---ykVWdL~~Y----s~iys------Ls~~---~VqeIkIS-dG~~Lai~q~t~~~--ipiKIl~ 263 (411)
++|+-+.+...++. ..+|.+..- ..... |+.. .+..+++| ||..||+....... .-|.||+
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 77887777766544 566776531 22222 2211 57789999 99988887665443 6799999
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeecc-eeEEeec--------------CceeeEEEcccceE--EEeeccccCCCceE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNE-KLLVKQE--------------NENLQILDVRNFEL--TEVSRTEFMTPSAF 326 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~e-kllIKQe--------------~~~LkI~dL~t~e~--~~v~~T~f~hpsAf 326 (411)
+.||+.+.. .++. -++..+.-++| .++.... ...|.+|++.+++. ..+ -+...+|..+
T Consensus 196 l~tg~~~~~---~~~~-~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv-~~~~~~~~~~ 270 (741)
T 1yr2_A 196 VADGKPLAD---ELKW-VKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV-FATPELPKRG 270 (741)
T ss_dssp TTTCCEEEE---EEEE-EESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE-ECCTTCTTCE
T ss_pred CCCCCCCCc---cCCC-ceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE-eccCCCCeEE
Confidence 999998764 1121 12234566676 3444443 33589999988762 222 1333456566
Q ss_pred EEEeec----eeEEEEecC-----eEEEEecC-Cc-e-eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcccc
Q 015220 327 IFLYEN----QLFLTFRNR-----TVAVWNFR-GE-L-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (411)
Q Consensus 327 ifLy~s----qlFlSfsd~-----tI~iWn~~-Ge-l-~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~ 394 (411)
..+..+ .++++..++ .|.+||+. |+ . .+.+..+.. .. .-.+++||+.|+..+.+. .
T Consensus 271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~-~~~~~~dg~~l~~~s~~~------~ 338 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-----AQ-WDFVDGVGDQLWFVSGDG------A 338 (741)
T ss_dssp EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-----SC-EEEEEEETTEEEEEECTT------C
T ss_pred EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-----ce-EEEEeccCCEEEEEECCC------C
Confidence 666666 344444433 89999998 42 3 667776654 12 223579999999888764 4
Q ss_pred CCceEEEeeecce
Q 015220 395 GNGKLFVSLLMFV 407 (411)
Q Consensus 395 ~~gtI~i~~i~tG 407 (411)
.++.|.+||+.+|
T Consensus 339 ~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 339 PLKKIVRVDLSGS 351 (741)
T ss_dssp TTCEEEEEECSSS
T ss_pred CCCEEEEEeCCCC
Confidence 4688999999885
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.001 Score=69.39 Aligned_cols=267 Identities=13% Similarity=0.105 Sum_probs=153.3
Q ss_pred ccceehhhhccccceeeecccccEEEEEeCCCCc----------eEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 015220 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADE----------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (411)
Q Consensus 104 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e----------vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 173 (411)
+.+.|++-+..|.-.|+|..||+.+=........ +-+++-|. ++.|++.+ .| ..|.|--
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~v~v~~---~d--g~l~alD---- 144 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGA---WD--GRLIALD---- 144 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEEC---TT--SEEEEEE----
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE--CCEEEEEc---CC--CEEEEEE----
Confidence 5788888888899999999999998877765431 23444442 23444322 11 2333321
Q ss_pred hhhhCCCCCCCcceeec----------ccCCCCeEEeeCCCCeEEEeecC-----CCeEEEEEeeCceEEEEeccC--c-
Q 015220 174 YIRRGKPDAGFALFESE----------SLKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISDK--N- 235 (411)
Q Consensus 174 ~i~~gk~~~~~~LF~~~----------~l~~PgfvEFDd~NGkiLt~~~~-----ds~ykVWdL~~Ys~iysLs~~--~- 235 (411)
.+-|+. +.+.. ....|- | .+|++++.... ++.+..||.+|.+.+-+.... .
T Consensus 145 -~~tG~~-----~W~~~~~~~~~~~~~~~~~p~-v----~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~ 213 (677)
T 1kb0_A 145 -AATGKE-----VWHQNTFEGQKGSLTITGAPR-V----FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP 213 (677)
T ss_dssp -TTTCCE-----EEEEETTTTCCSSCBCCSCCE-E----ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred -CCCCCE-----EeeecCCcCcCcCcccccCcE-E----ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc
Confidence 122222 22211 111222 2 15777775542 789999999999988655421 1
Q ss_pred -------------------------------eeEEEEe--CCEEEEEEecCC-------------C---ceeeEEEEecC
Q 015220 236 -------------------------------VQEIKIS--PGIMLLIFTKAS-------------G---HVPLKILSIED 266 (411)
Q Consensus 236 -------------------------------VqeIkIS--dG~~Lai~q~t~-------------~---~ipiKIl~I~t 266 (411)
...+.++ .|+ |.+..... . ...|..||..|
T Consensus 214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~-vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T 292 (677)
T 1kb0_A 214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNT-MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT 292 (677)
T ss_dssp TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred cccccccccccccccccccCceeEeCCCcccccceeEcCCCCE-EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC
Confidence 1234454 343 33332211 0 01389999999
Q ss_pred CcEEeEeeeccccC-------Ccceeeeee--c---ceeEEeecCceeeEEEcccceEEE-ee--cccc-------C---
Q 015220 267 GTVLKSFNHLLHRN-------KKVDFIEQF--N---EKLLVKQENENLQILDVRNFELTE-VS--RTEF-------M--- 321 (411)
Q Consensus 267 G~~L~t~~~LL~h~-------K~I~FLE~~--~---ekllIKQe~~~LkI~dL~t~e~~~-v~--~T~f-------~--- 321 (411)
|++++.+.. -+|. ...-..... + ..++..+.+..|.++|..||+.+- ++ +.-| +
T Consensus 293 G~~~W~~~~-~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~ 371 (677)
T 1kb0_A 293 GKYKWHYQE-TPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPI 371 (677)
T ss_dssp CCEEEEEES-STTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEE
T ss_pred CCEEEEEec-CCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCcee
Confidence 999998763 2221 112222221 1 345777788999999999999864 11 0000 0
Q ss_pred --------------CC------ce-EEEEe-eceeEEEE-e---------------------------------------
Q 015220 322 --------------TP------SA-FIFLY-ENQLFLTF-R--------------------------------------- 339 (411)
Q Consensus 322 --------------hp------sA-fifLy-~sqlFlSf-s--------------------------------------- 339 (411)
.| .+ -.++. ..+++++- .
T Consensus 372 ~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~ 451 (677)
T 1kb0_A 372 GIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPP 451 (677)
T ss_dssp ECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCC
T ss_pred eccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccC
Confidence 00 00 00111 11332221 1
Q ss_pred ----cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 ----NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 ----d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.++|..||+. |+++-++.-... .....++.+|++++.++.|. ++.+||..|||++
T Consensus 452 ~~~~~g~l~A~D~~tG~~~W~~~~~~~------~~~g~~~~~g~~v~~g~~dg----------~l~a~D~~tG~~l 511 (677)
T 1kb0_A 452 KSKPFGRLLAWDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTADG----------RLVAYHAATGEKL 511 (677)
T ss_dssp CSCCEEEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTS----------EEEEEETTTCCEE
T ss_pred CCCCccEEEEEeCCCCcEEeecCCCCC------CcCcceEeCCCEEEEECCCC----------cEEEEECCCCcee
Confidence 2789999998 998887764332 23455777888999987775 9999999999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.005 Score=63.45 Aligned_cols=276 Identities=13% Similarity=0.085 Sum_probs=162.3
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
+-++++...+|.-+++|..|++.+-.|-... ..+.+-++...+.+.+.+ .|+ ....++ +..+ .+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~---~dg----~V~viD---~~~~---t~~ 231 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIG---RDG----KVNMID---LWMK---EPT 231 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEE---TTS----EEEEEE---TTSS---SCC
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEc---CCC----eEEEEE---CCCC---CCc
Confidence 3466677788999999999999988886543 567888888777766543 122 223332 2100 111
Q ss_pred cceeecccCCCCeEEeeC---CCCe-EEEeecCCCeEEEEEeeCceEEEEecc------------C-ceeEEEEe-CCEE
Q 015220 185 ALFESESLKWPGFVEFDD---VNGK-VLTYSAQDSIYKVFDLKNYTMLYSISD------------K-NVQEIKIS-PGIM 246 (411)
Q Consensus 185 ~LF~~~~l~~PgfvEFDd---~NGk-iLt~~~~ds~ykVWdL~~Ys~iysLs~------------~-~VqeIkIS-dG~~ 246 (411)
.+-+-..=..|--+.|+. ++|+ +.+.+-.++++.|||..+.+.+..++- + .|..|..| ++-.
T Consensus 232 ~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 232 TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred EeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence 122222234588899997 7885 566666789999999999999988761 1 56777777 3222
Q ss_pred EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eEEe-ecCceeeEEEcccceEEEeecc--ccC
Q 015220 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVRNFELTEVSRT--EFM 321 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~t~e~~~v~~T--~f~ 321 (411)
+.+.....+ -|.+++..+.+.++.... ...+..+-+...+++ +++. +.+++|.++|+.+++....-.+ .-.
T Consensus 312 ~vv~~~~~g--~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P 387 (567)
T 1qks_A 312 FIVNVKETG--KILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 387 (567)
T ss_dssp EEEEETTTT--EEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred EEEEecCCC--eEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence 222222222 233344443332222111 111122223445544 4554 4789999999999998763333 334
Q ss_pred CC-ceEEEEe--eceeEEEE--ecCeEEEEecCC--------ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 322 TP-SAFIFLY--ENQLFLTF--RNRTVAVWNFRG--------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 322 hp-sAfifLy--~sqlFlSf--sd~tI~iWn~~G--------el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
|| ....|.. ...+|+|. .+++|.|++.+. ..++++...-. ----|..+||+..+..-..-.+
T Consensus 388 hpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-----g~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 388 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-----GSLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-----CCCCEECCTTCSEEEEECTTCS
T ss_pred CCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-----CCEEEEeCCCCCeEEEecCCCC
Confidence 66 3444444 24677776 578999999873 36667665421 1012446888887765443221
Q ss_pred CCccccCCceEEEeeecce
Q 015220 389 DDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~tG 407 (411)
+ .+...+|-++|+.|.
T Consensus 463 ~---~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 463 E---AEISGSVAVFDIKAM 478 (567)
T ss_dssp S---HHHHTCEEEEEGGGC
T ss_pred C---cccCceEEEEECCcc
Confidence 0 012358888888876
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0023 Score=56.78 Aligned_cols=197 Identities=11% Similarity=0.002 Sum_probs=127.4
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT 268 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~ 268 (411)
.++|--+.+|..++++.+.....+.+.++|+.+......+.. .....+.++ ++-.|.+.+...++ |.++++. |+
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~--I~~~~~~-g~ 111 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDR--IEVAKMD-GT 111 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTE--EEEEETT-SC
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCE--EEEEEcC-CC
Confidence 467899999999999999999999999999987654333433 478889998 45455666655554 4566764 43
Q ss_pred EEeEeeeccccC-Ccceeeeeec--ceeEEeecC---ceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-ec
Q 015220 269 VLKSFNHLLHRN-KKVDFIEQFN--EKLLVKQEN---ENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-RN 340 (411)
Q Consensus 269 ~L~t~~~LL~h~-K~I~FLE~~~--ekllIKQe~---~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-sd 340 (411)
....+ +... ....-|++.+ +.+++...+ +.|..+++.......+..+.+..|..+.+=. ...+|++= .+
T Consensus 112 ~~~~~---~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 112 QRRVL---FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp SCEEE---ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred CEEEE---EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 33331 1111 3346688875 567777754 6888888865444444444556777765543 34788887 67
Q ss_pred CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 341 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 341 ~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++|.+++++|.-++.+-.. +.+| ..+++ |++.|.-.... +++|.+.|..|||.+
T Consensus 189 ~~I~~~~~~g~~~~~~~~~-~~~P----~gi~~--d~~~lyva~~~---------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLEG-LQYP----FAVTS--YGKNLYYTDWK---------TNSVIAMDLAISKEM 242 (267)
T ss_dssp TEEEEEETTEEEEEEEEEC-CCSE----EEEEE--ETTEEEEEETT---------TTEEEEEETTTTEEE
T ss_pred CEEEEEecCCCceEEEecC-CCCc----eEEEE--eCCEEEEEECC---------CCeEEEEeCCCCCce
Confidence 8999999997654444322 3333 34444 45555443322 358999999888864
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00094 Score=64.00 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=123.4
Q ss_pred EEeeCCCCeEEEeecCC--CeEEEEEeeCceEEEEeccC-c-e-eEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSISDK-N-V-QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~d--s~ykVWdL~~Ys~iysLs~~-~-V-qeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
+||+ +|....+.+.+ |.++++|+++.+.+.++.-. + + .-+.+.++.+. +-+...--+-++|.+|++++.+
T Consensus 48 L~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly---~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 48 FFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIV---GLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEE---EEESSSSEEEEEETTTCCEEEE
T ss_pred EEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEE---EEEeeCCEEEEEECccCcEEEE
Confidence 4788 47888877775 59999999999999887622 2 3 33666665532 2343344567999999999999
Q ss_pred eeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE-eeccccCCC----ceEEEEeeceeEEEE-ecCeEEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTP----SAFIFLYENQLFLTF-RNRTVAVW 346 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hp----sAfifLy~sqlFlSf-sd~tI~iW 346 (411)
|..- .+=--+.--+..+++..+++.|..+|-.|.+... |+-+.-+.| ...-+. ..++|+.. .+++|.+-
T Consensus 123 i~~~----~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI 197 (262)
T 3nol_A 123 FNYD----GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI 197 (262)
T ss_dssp EECS----SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EECC----CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence 7742 1112233334445666678899999999977665 333322222 222332 45899888 78999999
Q ss_pred ecC-CceeeeeccccccC-------CCCccceEEEcCCCCEEEEEecC
Q 015220 347 NFR-GELVTSFEDHLLWH-------PDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~-------~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
|++ |+.+.+++-.-+.. ++-.-|-|+.+|+++.++.-+|-
T Consensus 198 Dp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 198 DPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 999 99998777654431 12366999999999999998886
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0013 Score=62.11 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=127.8
Q ss_pred EEeeCCCCeEEEeecC--CCeEEEEEeeCceEEEEec--cCce-eEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS--DKNV-QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~--ds~ykVWdL~~Ys~iysLs--~~~V-qeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
+|||+ |+...+.+. +|.++++|+++.+.+.++. +.-+ .-+.+.++.+..+ +-..--+-++|.+|++++.+
T Consensus 26 L~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~l---tw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 26 LFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQL---TWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp EEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEE---ESSSSEEEEEETTTTEEEEE
T ss_pred EEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEE---EeeCCEEEEEECCcCcEEEE
Confidence 58997 788888887 4799999999999998876 2222 3466666664333 33333467999999999999
Q ss_pred eeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE-eeccccCCCceEEEEe-----eceeEEEE-ecCeEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLY-----ENQLFLTF-RNRTVAV 345 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy-----~sqlFlSf-sd~tI~i 345 (411)
|..- .+=--|.--+..+++..++++|.++|-.|.+... +.-+ .++..+-++. ..++|+.. .++.|.+
T Consensus 101 i~~~----~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~--~~g~~~~~lNeLe~~~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 101 FRYP----GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT--AGGRPLDNLNELEWVNGELLANVWLTSRIAR 174 (243)
T ss_dssp EECS----SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECE--ETTEECCCEEEEEEETTEEEEEETTTTEEEE
T ss_pred EeCC----CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc--cCCcccccceeeEEeCCEEEEEECCCCeEEE
Confidence 8742 1223344445667888899999999999977665 3223 3666666653 33889888 7889999
Q ss_pred EecC-Cceeeeecccccc--------CCCCccceEEEcCCCCEEEEEecC
Q 015220 346 WNFR-GELVTSFEDHLLW--------HPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 346 Wn~~-Gel~~s~e~H~~~--------~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
-|++ |+.+..+.=.-+. ..+-..|-|+.+|+++.|+.-.|-
T Consensus 175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 9999 9988876644332 123467999999999988877664
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00075 Score=62.75 Aligned_cols=159 Identities=10% Similarity=0.117 Sum_probs=100.9
Q ss_pred eEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee----eccccCCcceeeeeecce-eEEeec-
Q 015220 226 TMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN----HLLHRNKKVDFIEQFNEK-LLVKQE- 298 (411)
Q Consensus 226 s~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~----~LL~h~K~I~FLE~~~ek-llIKQe- 298 (411)
+.+.+.. .....|.++ +|.+++....-+... .+||.+.+|++. .+- ..-++...++-|.+.+++ |++...
T Consensus 10 ~~v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~-~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g 86 (343)
T 2qe8_A 10 EVVAELS-LAPGNITLTPDGRLFLSLHQFYQPE-MQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNG 86 (343)
T ss_dssp EEEEEES-SCEEEEEECTTSCEEEEECGGGCCS-CSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECH
T ss_pred EEEEEcC-CCcceEEECCCCCEEEEeCCCCCCc-eEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCC
Confidence 4444444 578899999 787665544333223 777777788754 221 011344567778888755 566543
Q ss_pred -----CceeeEEEcccceEEE-e--ecccc---CCCceEEEEe-eceeEEEEe----cCeEEEEecC-Cceeeeeccccc
Q 015220 299 -----NENLQILDVRNFELTE-V--SRTEF---MTPSAFIFLY-ENQLFLTFR----NRTVAVWNFR-GELVTSFEDHLL 361 (411)
Q Consensus 299 -----~~~LkI~dL~t~e~~~-v--~~T~f---~hpsAfifLy-~sqlFlSfs----d~tI~iWn~~-Gel~~s~e~H~~ 361 (411)
+++|.+||+.+++... + +.... ..|..+.+=. ...+|++-. ++.|.+||+. |++.+.+.+|..
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 4799999999998554 2 21111 1223332221 236788864 6799999998 888888887644
Q ss_pred cCCC------------------------CccceEEEcCCCCEEEEEecCC
Q 015220 362 WHPD------------------------CNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 362 ~~~~------------------------c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
..|+ ...|.|++||||+.+.....+.
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred ccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence 3321 2368899999999887776553
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.005 Score=56.84 Aligned_cols=225 Identities=11% Similarity=0.106 Sum_probs=132.3
Q ss_pred EeeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC
Q 015220 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (411)
Q Consensus 101 Iv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~ 180 (411)
.+...+.|++-+..|.-.|||..||+.+=...... ++..+.... ++.+++.+ .+ ..|.|-.. .-|+
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~p~~~--~~~v~v~~---~~--g~l~~~d~-----~tG~- 164 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-EALSRPVVS--DGLVLIHT---SN--GQLQALNE-----ADGA- 164 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS-CCCSCCEEE--TTEEEEEC---TT--SEEEEEET-----TTCC-
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-ceEcCCEEE--CCEEEEEc---CC--CeEEEEEC-----CCCc-
Confidence 34557888888888989999999999776555432 222222222 23444322 11 12333221 1122
Q ss_pred CCCCcceeecc---------cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc------------e-eE
Q 015220 181 DAGFALFESES---------LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN------------V-QE 238 (411)
Q Consensus 181 ~~~~~LF~~~~---------l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~------------V-qe 238 (411)
.+..... ...|- .+ +|.+++ ...++.+..+|.++.+.+.+..... + ..
T Consensus 165 ----~~W~~~~~~~~~~~~~~~~~~---~~--~~~v~~-g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 234 (376)
T 3q7m_A 165 ----VKWTVNLDMPSLSLRGESAPT---TA--FGAAVV-GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTT 234 (376)
T ss_dssp ----EEEEEECCC-----CCCCCCE---EE--TTEEEE-CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCC
T ss_pred ----EEEEEeCCCCceeecCCCCcE---EE--CCEEEE-EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCC
Confidence 2222110 11221 22 455544 4557788888998888886654221 1 22
Q ss_pred EEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeecc
Q 015220 239 IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT 318 (411)
Q Consensus 239 IkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T 318 (411)
..+.+|.+++... .-.+..++..||+++++... ....-+...++.+++...+..|..+|..+|+..--...
T Consensus 235 p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 235 PVVVNGVVFALAY----NGNLTALDLRSGQIMWKREL-----GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp CEEETTEEEEECT----TSCEEEEETTTCCEEEEECC-----CCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred cEEECCEEEEEec----CcEEEEEECCCCcEEeeccC-----CCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 3345676555432 22578899999999988542 22344677889999999999999999999987542111
Q ss_pred ccCCCceEEEEeeceeEEEEecCeEEEEecC-Cceeeeecc
Q 015220 319 EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED 358 (411)
Q Consensus 319 ~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~ 358 (411)
.-.....-..++...+|+.-.++.+.++|.+ |+++.+++-
T Consensus 306 ~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 306 LLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp TTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 1111111122345577776688999999988 998876654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0015 Score=59.16 Aligned_cols=198 Identities=13% Similarity=0.128 Sum_probs=124.3
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceE--EEEecc----CceeEEEEe-CCEEEEEEecCCC------ceeeE
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISD----KNVQEIKIS-PGIMLLIFTKASG------HVPLK 260 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~--iysLs~----~~VqeIkIS-dG~~Lai~q~t~~------~ipiK 260 (411)
.|+.+-|| ++|+.++.. ++.+.+||.++.+. +..... ..+.+++++ +|.+++....... .-.-+
T Consensus 55 ~~~~i~~~-~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 55 PVSSVALR-QSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp CEEEEEEB-TTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred ceEEEEEC-CCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence 57777786 577766654 56788899987664 333321 257889999 8886664432211 12346
Q ss_pred EEEec-CCcEEeEeeeccccCCcceeeeeecce--eEEe-ecCceeeEEEc--ccceEEE--eec---cccCCCceEEEE
Q 015220 261 ILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDV--RNFELTE--VSR---TEFMTPSAFIFL 329 (411)
Q Consensus 261 Il~I~-tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL--~t~e~~~--v~~---T~f~hpsAfifL 329 (411)
||.+. +|+...- ...-...+-|..++++ +++. +.++.|.+||+ .+|++.. +-. ...+.|..+.+=
T Consensus 132 l~~~d~~g~~~~~----~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 132 LYSLFPDHHVKKY----FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID 207 (297)
T ss_dssp EEEECTTSCEEEE----EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB
T ss_pred EEEEECCCCEEEE----eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC
Confidence 77776 4554332 2222345668888765 4444 45788999998 5665421 111 122355554433
Q ss_pred eeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEc-CCCCEEEEEecCCCCCc--c--ccCCceEEEe
Q 015220 330 YENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYCKADSDDP--L--AEGNGKLFVS 402 (411)
Q Consensus 330 y~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is-~Dqd~iiS~~~d~~~~~--~--~~~~gtI~i~ 402 (411)
...+++++- .++.|..||+. |+++..+.-+.. ...+++.+ ||++.|.-.+.....+. . ....|.+-.+
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~-----~~t~~~f~g~d~~~L~vt~~~~~~~~~~~~~~p~~G~~f~~ 282 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD-----KTTSCCFGGKNYSEMYVTCARDGMDPEGLLRQPEAGGIFKI 282 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS-----BEEEEEEESGGGCEEEEEEBCTTCCHHHHHHCTTTTCEEEE
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC-----CceEEEEeCCCCCEEEEEcCCcCCChhHccCCCCCceEEEe
Confidence 334888887 56789999998 999999877654 67788888 89998887777653221 1 1224877666
Q ss_pred e
Q 015220 403 L 403 (411)
Q Consensus 403 ~ 403 (411)
+
T Consensus 283 ~ 283 (297)
T 3g4e_A 283 T 283 (297)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0041 Score=64.94 Aligned_cols=55 Identities=5% Similarity=0.027 Sum_probs=44.2
Q ss_pred cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++|..||+. |+++-++..|..+ +.-.++..+.+++.|+.|. .+..||..|||.+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~gt~dg----------~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIF------NGGTLSTAGNLVFEGSADG----------RVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECTTS----------EEEEEETTTCCEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCc------cCccceECCCEEEEECCCC----------cEEEEECCCCccc
Confidence 4889999998 9999888776542 2235566788999998875 9999999999986
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0068 Score=57.59 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=127.7
Q ss_pred EEeeCCCCeEEEeecC--CCeEEEEEeeCceEEEEec--cC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS--DK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~--ds~ykVWdL~~Ys~iysLs--~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
++||+ +|+..++.++ ++.+.++|+.+.+.+.++. +. ....+.+.++.+ .+..-..+. +-++|..|++++.+
T Consensus 26 l~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~l-yv~t~~~~~--v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 26 LVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKL-YQVVWLKNI--GFIYDRRTLSNIKN 101 (266)
T ss_dssp EEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEE-EEEETTCSE--EEEEETTTTEEEEE
T ss_pred EEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEE-EEEEecCCE--EEEEECCCCcEEEE
Confidence 77874 4888887765 7999999999999998875 33 444577776653 333444444 67799999999999
Q ss_pred eeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE-eeccccC----CCceEEEEeeceeEEEE-ecCeEEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFM----TPSAFIFLYENQLFLTF-RNRTVAVW 346 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~----hpsAfifLy~sqlFlSf-sd~tI~iW 346 (411)
+.. + ..+---|..-+..+++..+++.|.++|..+.+... |+-+.-+ .|.++.+. ..++|++- .+++|.+=
T Consensus 102 i~~--g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 102 FTH--Q-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEC--C-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEC--C-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 653 3 12222245456678888899999999999977555 3322211 24455555 45899888 78999999
Q ss_pred ecC-Cceeeeecccc--------ccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 347 NFR-GELVTSFEDHL--------LWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 347 n~~-Gel~~s~e~H~--------~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
|+. |+.+.++.=.- .-.+.-..|-|+++||++.++..++.-
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 998 99888775221 111223668999999999888888764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.86 E-value=0.014 Score=58.23 Aligned_cols=267 Identities=12% Similarity=0.100 Sum_probs=153.9
Q ss_pred cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCccee---ec
Q 015220 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE---SE 190 (411)
Q Consensus 114 sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~---~~ 190 (411)
+|.-.++|..|++.+-.|-.+..- + +-++.....+.+.+.+.+.....=.--.++.=|...++.-..-++-. ..
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P--~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP--N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC--E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCCC--c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 477888999999999888775543 5 88888888877766543211000000011111222111100000000 00
Q ss_pred ccCCCCeEEeeCCCCeEEEeecC-CCeEEEEEeeCceEEEEeccCce---eE------EEEe-CCEEEEEEecCCCceee
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKNV---QE------IKIS-PGIMLLIFTKASGHVPL 259 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~-ds~ykVWdL~~Ys~iysLs~~~V---qe------IkIS-dG~~Lai~q~t~~~ipi 259 (411)
.-.+|.-+.|+.-..++.+++.. ++++.|+|+.+.+.+.+|.-... .- +.+| ||.++.+...+.+++
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v-- 212 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP-- 212 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC--
T ss_pred cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE--
Confidence 12489999998666667777654 78999999999999988852211 10 2444 666555555443333
Q ss_pred EEEEecCCcEEeEeeeccccCCccee--eee-ecc-eeEEeecCceeeEEEcccceEEEeeccc-cC--------CCceE
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDF--IEQ-FNE-KLLVKQENENLQILDVRNFELTEVSRTE-FM--------TPSAF 326 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~F--LE~-~~e-kllIKQe~~~LkI~dL~t~e~~~v~~T~-f~--------hpsAf 326 (411)
..+....+...+..-| .+. ..+ +++.-+.+..+.+.|+.++....+.+.. |. .|...
T Consensus 213 ----------~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 213 ----------EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 282 (386)
T ss_dssp ----------EEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred ----------EEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence 2111111111111111 122 133 4666777788999999887654432221 21 23322
Q ss_pred EEEe----eceeEEEEe----------cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCC-EEEEEecCCCCC
Q 015220 327 IFLY----ENQLFLTFR----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDD 390 (411)
Q Consensus 327 ifLy----~sqlFlSfs----------d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d~~~~ 390 (411)
--++ .+.+|++-. .++|.+-|+. ++.++++.--. ..+.+++|+||+ +|+..+-.
T Consensus 283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~------~~~~lavs~D~~~~ly~tn~~---- 352 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTG---- 352 (386)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECSSSSCEEEEEETT----
T ss_pred ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC------CcceEEECCCCCeEEEEEcCC----
Confidence 2222 338888864 3678899998 99988765321 357899999997 77766532
Q ss_pred ccccCCceEEEeeecceeee
Q 015220 391 PLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 391 ~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|+|-+.|..|||.+
T Consensus 353 -----~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 353 -----DKTLYIHDAESGEEL 367 (386)
T ss_dssp -----TTEEEEEETTTCCEE
T ss_pred -----CCeEEEEECCCCcEE
Confidence 259999999999975
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.013 Score=58.96 Aligned_cols=270 Identities=12% Similarity=0.054 Sum_probs=152.0
Q ss_pred ccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC-----Ccceee
Q 015220 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-----FALFES 189 (411)
Q Consensus 115 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~-----~~LF~~ 189 (411)
|.-.++|..|++.+-.|-.+..- -|-++.....|.+.+.+.+..+..=.-..+..=|...++.-.. .+-|.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P---gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~- 174 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP---HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL- 174 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC-
T ss_pred CeEEEEECCCCEEEEEEECCCCC---ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc-
Confidence 67889999999999888876543 5778888887777654322110000001122112222221000 00111
Q ss_pred cccCCCCeEEeeCCCCeEEEeecC-CCeEEEEEeeCceEEEEeccCceeEEEEe-CC-EEEEEEecCCCceeeEEEEecC
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKNVQEIKIS-PG-IMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~-ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG-~~Lai~q~t~~~ipiKIl~I~t 266 (411)
....|.-+-|+.-..++.+.+.. ++++-|.|+++.+.+.+|.-... ..+. +| ..++...+....++ .++.+
T Consensus 175 -~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~---V~~~~ 248 (426)
T 3c75_H 175 -VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLAR---VDFAD 248 (426)
T ss_dssp -BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEE---EECCT
T ss_pred -cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEE---EECCC
Confidence 13568999998776677777654 78999999999999887763221 1111 01 11111222222222 22245
Q ss_pred CcEEeEeeeccccCCcceee----eeecceeEEeecCceeeEEEcccceEEEeec-c--------ccCCCce--EEEEe-
Q 015220 267 GTVLKSFNHLLHRNKKVDFI----EQFNEKLLVKQENENLQILDVRNFELTEVSR-T--------EFMTPSA--FIFLY- 330 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FL----E~~~ekllIKQe~~~LkI~dL~t~e~~~v~~-T--------~f~hpsA--fifLy- 330 (411)
|++.......+.-.+..-|+ ..-+..+++-..+..+-+.|+.+++...+.. + ....|.. .+.+.
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 54443210000000111111 1123455555667789999998765443221 0 0012322 13333
Q ss_pred -eceeEEEEe----------cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCC-EEEEEec-CCCCCccccCC
Q 015220 331 -ENQLFLTFR----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCK-ADSDDPLAEGN 396 (411)
Q Consensus 331 -~sqlFlSfs----------d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~-d~~~~~~~~~~ 396 (411)
.+.+|++-. +++|.+.|+. ++.++++.--. .-..|++||||+ ++++.+- +.
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~------~P~gia~spDg~~~lyv~n~~s~--------- 393 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH------EIDSINVSQDAEPLLYALSAGTQ--------- 393 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTT---------
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC------CcCeEEEccCCCEEEEEEcCCCC---------
Confidence 237888864 4689999999 99999885322 357899999999 9998884 54
Q ss_pred ceEEEeeecceeee
Q 015220 397 GKLFVSLLMFVTCK 410 (411)
Q Consensus 397 gtI~i~~i~tGk~~ 410 (411)
+|-+.|..|+|.+
T Consensus 394 -~VsVID~~t~kvv 406 (426)
T 3c75_H 394 -TLHIYDAATGEEL 406 (426)
T ss_dssp -EEEEEETTTCCEE
T ss_pred -eEEEEECCCCCEE
Confidence 9999999999975
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.2e-05 Score=74.90 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=64.6
Q ss_pred eeEEEEecCCcEEeEeeeccccCCcceeeeee-cceeEEe-ecCceeeEEEcccceEEEeeccccCCCc----eEEEEee
Q 015220 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPS----AFIFLYE 331 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~-~ekllIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hps----AfifLy~ 331 (411)
.|..||.+||++++++.. .++...-.. ++.+++. ..+..|.+||..+|+.... ..+..+. +......
T Consensus 20 ~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~--~~~~~~~~~~~sp~~~~~ 92 (369)
T 2hz6_A 20 SLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK--LPFTIPELVQASPCRSSD 92 (369)
T ss_dssp EEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEE--CSCCHHHHHTTCSCC---
T ss_pred EEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee--eeccCccccccCceEecC
Confidence 588999999999999763 233333333 4446665 5889999999999886431 1111111 1111133
Q ss_pred ceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 332 NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 332 sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..+|+...++++..||.+ |+++-+++.|.. +..+|+++.++.++.|. +|..||..||+++
T Consensus 93 ~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---------~~~~p~~~~v~~~~~dg----------~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 93 GILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---------DSLSPSTSLLYLGRTEY----------TITMYDTKTRELR 153 (369)
T ss_dssp --CCCCEEEEEEEEECCC-------------------------------EEEEEEEE----------EEECCCSSSSSCC
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEecCCCc---------ccccccCCEEEEEecCC----------EEEEEECCCCCEE
Confidence 455655589999999999 999888876642 35677999999998775 9999999999864
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0093 Score=54.48 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=117.0
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
.+|.-+-+|. +|++.+....++.+.+||..+ +....+. ......+.++ +|.+ .+.+...+..-+-.++..+|++.
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l-~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDL-VATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCE-EEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcE-EEEeccCCcceEEEEcCCCCeEE
Confidence 5788888987 899999888888888888876 3332222 4578889998 7874 44443333334555677899875
Q ss_pred eEeeeccccCCcceeeeeecce-eEEee-cCceeeEEEcccce--EEEe--------eccccCCCceEEEEeeceeEEEE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEK-LLVKQ-ENENLQILDVRNFE--LTEV--------SRTEFMTPSAFIFLYENQLFLTF 338 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ek-llIKQ-e~~~LkI~dL~t~e--~~~v--------~~T~f~hpsAfifLy~sqlFlSf 338 (411)
.-.. + +..+-.+-+....+. +++.. .+..|..+|..+++ .+.. ....+..|..+ .-....+|++=
T Consensus 109 ~~~~-~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-s~dg~~lyv~d 185 (306)
T 2p4o_A 109 TLLT-L-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-KRFGNFLYVSN 185 (306)
T ss_dssp EEEE-C-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-EEETTEEEEEE
T ss_pred EEEe-C-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-CcCCCEEEEEe
Confidence 4322 1 221222333334444 35554 47788888987653 3221 11234456665 33334678887
Q ss_pred -ecCeEEEEecCC--ce--eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 339 -RNRTVAVWNFRG--EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 339 -sd~tI~iWn~~G--el--~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.+++|..+++++ .+ ...+.. .-.-..+++++||.+.++-... +.|.++|.. |++
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~------~~~P~gi~vd~dG~l~va~~~~----------~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVE------QTNIDDFAFDVEGNLYGATHIY----------NSVVRIAPD-RST 244 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEE------SCCCSSEEEBTTCCEEEECBTT----------CCEEEECTT-CCE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEec------cCCCCCeEECCCCCEEEEeCCC----------CeEEEECCC-CCE
Confidence 678999999984 32 112211 1245779999999887765433 366666653 543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0012 Score=63.63 Aligned_cols=177 Identities=12% Similarity=0.098 Sum_probs=125.1
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc-e-eEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-V-QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~-V-qeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
++||+ ++...+.+.++.++++|+++.+.+.++-+.+ + .-+.+.++.+ ++-+..---+-++|.+|++++++|..
T Consensus 60 L~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~L---y~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 60 LVFHQ--GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERL---YQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEET--TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCE---EEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEE---EEEEccCCEEEEEECCcCcEEEEEeC
Confidence 57884 8899999999999999999999887763333 2 3366665543 22343444578999999999999774
Q ss_pred ccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE-eeccccCCCceEEEEe-----eceeEEEE-ecCeEEEEec
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLY-----ENQLFLTF-RNRTVAVWNF 348 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy-----~sqlFlSf-sd~tI~iWn~ 348 (411)
- .+=--+.--+..+++..+++.|.++|-.|.+... +.-+. +|..+.++. ..++|+.. .+++|.+=|+
T Consensus 135 ~----~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~--~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 135 S----GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL--RGQPVELINELECANGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp S----SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE--TTEECCCEEEEEEETTEEEEEETTCSEEEEECT
T ss_pred C----CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC--CCcccccccccEEeCCEEEEEECCCCeEEEEeC
Confidence 1 2222344445556777779999999999987766 32222 556655443 34889888 7889999999
Q ss_pred C-Cceeeeeccccc--------cCCCCccceEEEcCCCCEEEEEec
Q 015220 349 R-GELVTSFEDHLL--------WHPDCNTNNIYITSDQDLIISYCK 385 (411)
Q Consensus 349 ~-Gel~~s~e~H~~--------~~~~c~~n~i~Is~Dqd~iiS~~~ 385 (411)
+ |+.+.+++=.-+ ..++-.-|-||.+|+++.|+.-.|
T Consensus 209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9 998886665422 123457799999999887776554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.01 Score=54.85 Aligned_cols=182 Identities=10% Similarity=-0.013 Sum_probs=110.8
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEE--Eec----cCceeEEEEe-CCEEEEEEecCC-CceeeEEEEec
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SIS----DKNVQEIKIS-PGIMLLIFTKAS-GHVPLKILSIE 265 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iy--sLs----~~~VqeIkIS-dG~~Lai~q~t~-~~ipiKIl~I~ 265 (411)
.|..+-|| ++|++++.. +.-+.+||.++.+... ... ...+.++.++ +|.+++.....+ ..-...||.+.
T Consensus 91 ~v~~i~~~-~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 91 MGSALAKI-SDSKQLIAS--DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp CEEEEEEE-ETTEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred cceEEEEe-CCCeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 46667776 468877765 3447888988776432 221 1258889999 787655433211 11224566665
Q ss_pred CCcEEeEeeeccccCCcceeeeeecce--eEEe-ecCceeeEEEcc--cc-eEE---Eee--ccccCCCceEEEEeecee
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVR--NF-ELT---EVS--RTEFMTPSAFIFLYENQL 334 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~--t~-e~~---~v~--~T~f~hpsAfifLy~sql 334 (411)
+|+...- .......+-+..++++ +++. +.++.|.+||+. +| +.. .+. ......|..+.+-....+
T Consensus 168 ~g~~~~~----~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 168 KGKVTKL----FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp TTEEEEE----EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred CCcEEEe----eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence 6765432 2222345667788765 5454 456899999986 66 321 111 111234444333223367
Q ss_pred EEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEc-CCCCEEEEEecCC
Q 015220 335 FLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYCKAD 387 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is-~Dqd~iiS~~~d~ 387 (411)
+++- .++.|..|++.|++++++..+.. .+..++++ +|++.|+..+...
T Consensus 244 wva~~~~~~v~~~d~~g~~~~~i~~~~~-----~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 244 WNARWGEGAVDRYDTDGNHIARYEVPGK-----QTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEETTTEEEEECTTCCEEEEEECSCS-----BEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEeCCCEEEEECCCCCEEEEEECCCC-----CcEEEEEecCCCCEEEEEecCC
Confidence 7776 46899999999999988876544 67889998 8988776665554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0011 Score=65.19 Aligned_cols=195 Identities=11% Similarity=0.040 Sum_probs=119.8
Q ss_pred CCCeEEeeCCCCeEEEeec---------CCCeEEEEEeeCceEEEEec-c--------CceeEEEEe-CCEEEEEEecC-
Q 015220 194 WPGFVEFDDVNGKVLTYSA---------QDSIYKVFDLKNYTMLYSIS-D--------KNVQEIKIS-PGIMLLIFTKA- 253 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~---------~ds~ykVWdL~~Ys~iysLs-~--------~~VqeIkIS-dG~~Lai~q~t- 253 (411)
.|| +-|+.-..++.+.+. .++++.|||+.+++.+.+|. . ++-..+.+| ||..|++.+..
T Consensus 67 ~P~-i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~ 145 (368)
T 1mda_H 67 LSL-AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp TCE-EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred CCc-eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC
Confidence 474 788876667777662 47899999999999999985 2 456789999 89888888754
Q ss_pred CCceeeEEEEecCCcEEeEeee-----ccccCCcceee---------------------------------------eee
Q 015220 254 SGHVPLKILSIEDGTVLKSFNH-----LLHRNKKVDFI---------------------------------------EQF 289 (411)
Q Consensus 254 ~~~ipiKIl~I~tG~~L~t~~~-----LL~h~K~I~FL---------------------------------------E~~ 289 (411)
.+.+-+.++|+.| ++++.. +.+..+. -|+ -..
T Consensus 146 ~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~-~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~ 221 (368)
T 1mda_H 146 SAAAGLSVPGASD---DQLTKSASCFHIHPGAAA-THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY 221 (368)
T ss_dssp SCEEEEEETTTEE---EEEEECSSCCCCEEEETT-EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred CCeEEEEEEchhh---ceEEECCCceEEccCCCe-EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcccccc
Confidence 4555555588776 333210 0000000 000 011
Q ss_pred cceeEEeecCceeeEEEcccceEEEeecccc---------CCCceE--EEEe--eceeEEEEe-c--------CeEEEEe
Q 015220 290 NEKLLVKQENENLQILDVRNFELTEVSRTEF---------MTPSAF--IFLY--ENQLFLTFR-N--------RTVAVWN 347 (411)
Q Consensus 290 ~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f---------~hpsAf--ifLy--~sqlFlSfs-d--------~tI~iWn 347 (411)
.+.++.... +.+.+.|+.+++...+..-.+ ..|... +.+. ...+|++.. + +.+.+||
T Consensus 222 ~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD 300 (368)
T 1mda_H 222 PGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp TTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred CCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEE
Confidence 122344444 667777776543222111000 012221 2222 236787754 2 3556999
Q ss_pred cC-CceeeeeccccccCCCCccceEEEcCCCC-EEEEEe-cCCCCCccccCCceEEEeeecceeee
Q 015220 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYC-KADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd-~iiS~~-~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+. ++.++++.-... ...+++|+||+ ++++.. .+. +|-++|..|+|.+
T Consensus 301 ~~t~~vv~~i~vg~~------p~gi~~s~Dg~~l~va~~~~~~----------~VsVID~~t~kvv 350 (368)
T 1mda_H 301 ASVGQTSGPISNGHD------SDAIIAAQDGASDNYANSAGTE----------VLDIYDAASDQDQ 350 (368)
T ss_dssp SSSCCEEECCEEEEE------ECEEEECCSSSCEEEEEETTTT----------EEEEEESSSCEEE
T ss_pred CCCCeEEEEEECCCC------cceEEECCCCCEEEEEccCCCC----------eEEEEECCCCcEE
Confidence 99 999998865542 67899999998 455554 355 9999999999975
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.027 Score=49.78 Aligned_cols=177 Identities=8% Similarity=0.010 Sum_probs=113.7
Q ss_pred CCeEEEEEeeCce-------EEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCccee
Q 015220 214 DSIYKVFDLKNYT-------MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (411)
Q Consensus 214 ds~ykVWdL~~Ys-------~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~F 285 (411)
.+.+..+|+.+.. .+......+...+.++ ++..|.+.+..+++ |..+++.+++. ..+. -.......-
T Consensus 9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~--I~~~~~~g~~~-~~~~--~~~~~~p~~ 83 (267)
T 1npe_A 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS--IGRASLHGGEP-TTII--RQDLGSPEG 83 (267)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTE--EEEEESSSCCC-EEEE--CTTCCCEEE
T ss_pred CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCE--EEEEecCCCCc-EEEE--ECCCCCccE
Confidence 4578888887753 3444445678899998 46666777766654 56678766554 2211 112245577
Q ss_pred eeeec--ceeEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEEe---cCeEEEEecCCceeeeecc
Q 015220 286 IEQFN--EKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR---NRTVAVWNFRGELVTSFED 358 (411)
Q Consensus 286 LE~~~--ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSfs---d~tI~iWn~~Gel~~s~e~ 358 (411)
|++.+ +++++.. +++.|..+|+.......+..+.+..|..+.+-. ...+|++-. +++|..++++|...+.+..
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~ 163 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ 163 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEE
Confidence 88874 5677765 567899999876554444445556787665544 457888873 4689999999876655532
Q ss_pred ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 359 H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
-. .-.-+.+++++|++.|.-.... +++|.++|+.+++
T Consensus 164 ~~----~~~P~gia~d~~~~~lyv~d~~---------~~~I~~~~~~g~~ 200 (267)
T 1npe_A 164 DN----LGLPNGLTFDAFSSQLCWVDAG---------THRAECLNPAQPG 200 (267)
T ss_dssp TT----CSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTEEE
T ss_pred CC----CCCCcEEEEcCCCCEEEEEECC---------CCEEEEEecCCCc
Confidence 11 1256889999998766444332 2488888887654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.014 Score=56.79 Aligned_cols=196 Identities=6% Similarity=0.007 Sum_probs=121.1
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCC-eEEEEEeeCceEEEEe------ccCceeEEEEeC--CEEEEEEecCCCceeeEEE
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDS-IYKVFDLKNYTMLYSI------SDKNVQEIKISP--GIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds-~ykVWdL~~Ys~iysL------s~~~VqeIkISd--G~~Lai~q~t~~~ipiKIl 262 (411)
...|. +-||...+.+++.....+ .+.+|+..+......+ ....+..+.+++ |.+++ .... . -|..|
T Consensus 171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~-~--~I~~~ 245 (409)
T 3hrp_A 171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSN-K--NFGRF 245 (409)
T ss_dssp CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTT-C--EEEEE
T ss_pred CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECC-C--cEEEE
Confidence 34566 888876666666555443 7778887765444445 334778899994 66555 4432 2 57788
Q ss_pred EecCCcEEeEee-eccccCC--cceeeeeec--ceeEEee-cCceeeEEEcccceEEEeecc--------------ccCC
Q 015220 263 SIEDGTVLKSFN-HLLHRNK--KVDFIEQFN--EKLLVKQ-ENENLQILDVRNFELTEVSRT--------------EFMT 322 (411)
Q Consensus 263 ~I~tG~~L~t~~-~LL~h~K--~I~FLE~~~--ekllIKQ-e~~~LkI~dL~t~e~~~v~~T--------------~f~h 322 (411)
+..+++...-.. -..++.. |..-|...+ ..+++.. .++.|..||.... ...+.-. .|..
T Consensus 246 d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 246 NVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp ETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSS
T ss_pred ECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCC
Confidence 988887432100 0112111 222688887 4566654 6788999997644 3322211 2556
Q ss_pred CceEEEEeeceeEEEEe--cCeEEEEecC-Cceeeeecccc---ccC-------CCCccceEEEcCCCCEEEEEecCCCC
Q 015220 323 PSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHL---LWH-------PDCNTNNIYITSDQDLIISYCKADSD 389 (411)
Q Consensus 323 psAfifLy~sqlFlSfs--d~tI~iWn~~-Gel~~s~e~H~---~~~-------~~c~~n~i~Is~Dqd~iiS~~~d~~~ 389 (411)
|..+.+-...++|++=+ ++.|+.|++. |. ++++.+|- ++. ..-.-..|++++||.+.|+-+...
T Consensus 325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~-- 401 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK-- 401 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC--
T ss_pred CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC--
Confidence 77666554557888864 6799999954 76 56666661 111 112467899999999999877665
Q ss_pred CccccCCceEEEeee
Q 015220 390 DPLAEGNGKLFVSLL 404 (411)
Q Consensus 390 ~~~~~~~gtI~i~~i 404 (411)
.|...++
T Consensus 402 --------~Ir~i~~ 408 (409)
T 3hrp_A 402 --------AIRKYAV 408 (409)
T ss_dssp --------EEEEEEE
T ss_pred --------eEEEEEe
Confidence 7776665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0038 Score=64.14 Aligned_cols=156 Identities=11% Similarity=0.111 Sum_probs=98.2
Q ss_pred eeEEEEe-CCEEEEEEecCCC--ceeeEEEEecCCcEEeEeeeccccC--CcceeeeeecceeEEeecC-----------
Q 015220 236 VQEIKIS-PGIMLLIFTKASG--HVPLKILSIEDGTVLKSFNHLLHRN--KKVDFIEQFNEKLLVKQEN----------- 299 (411)
Q Consensus 236 VqeIkIS-dG~~Lai~q~t~~--~ipiKIl~I~tG~~L~t~~~LL~h~--K~I~FLE~~~ekllIKQe~----------- 299 (411)
+..+.+| ||..||...-... ..-|.|++++||+.+... +... ..+.+. -++.++.-...
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP---LKDVKFSGISWL--GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE---EEEEESCCCEEE--TTTEEEEEESSCCC-------C
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc---cCCceeccEEEe--CCCEEEEEEecCcccccccccC
Confidence 5566788 8888887765554 388999999999987651 1211 223333 34456555443
Q ss_pred --ceeeEEEcccceE--EEeeccccC-CCceEEEEeec----eeEEEEec----CeEEEEecC-Cc-eeeeeccccccCC
Q 015220 300 --ENLQILDVRNFEL--TEVSRTEFM-TPSAFIFLYEN----QLFLTFRN----RTVAVWNFR-GE-LVTSFEDHLLWHP 364 (411)
Q Consensus 300 --~~LkI~dL~t~e~--~~v~~T~f~-hpsAfifLy~s----qlFlSfsd----~tI~iWn~~-Ge-l~~s~e~H~~~~~ 364 (411)
.+|.+|++.++.. ..|- +.-+ ||..++.++.+ .|+++-.+ +.|.+|++. |+ ..+.+..|..
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~--- 281 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVF-GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD--- 281 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEE-SCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS---
T ss_pred CCcEEEEEECCCCcccceEEE-ecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC---
Confidence 5599999998653 3321 2233 56667777766 45555432 488899987 43 5667777665
Q ss_pred CCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 365 ~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.... .+++||+.|+--++.+ ..++.|-.+|+.+|++
T Consensus 282 --~~~~-~~~~~g~~l~~~t~~~------~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 282 --ADVS-LVDNKGSTLYLLTNRD------APNRRLVTVDAANPGP 317 (693)
T ss_dssp --SCEE-EEEEETTEEEEEECTT------CTTCEEEEEETTSCCG
T ss_pred --ceEE-EEeccCCEEEEEECCC------CCCCEEEEEeCCCCCc
Confidence 2222 3778877665444443 3468999999988754
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.011 Score=53.52 Aligned_cols=177 Identities=11% Similarity=0.072 Sum_probs=110.7
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc-------CceeEEEEe-CCEEEEEEe--cC-----------
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------KNVQEIKIS-PGIMLLIFT--KA----------- 253 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-------~~VqeIkIS-dG~~Lai~q--~t----------- 253 (411)
|--+.+|. +|++++....++.+.+|+.. .+. ..+.+ ..+.++.++ +|.++++.. .+
T Consensus 88 ~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~ 164 (305)
T 3dr2_A 88 TNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADP 164 (305)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred cceeeECC-CCCEEEEECCCCEEEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccc
Confidence 44566664 78888877777788888875 332 22221 135578888 888665421 11
Q ss_pred -CCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eEEeecC------ceeeEEEcccceEEE---eeccccC
Q 015220 254 -SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQEN------ENLQILDVRNFELTE---VSRTEFM 321 (411)
Q Consensus 254 -~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQe~------~~LkI~dL~t~e~~~---v~~T~f~ 321 (411)
....-|-.++..+|+...-. .-...+-+..++++ +++.... +.|.+||+..+.+.. ......+
T Consensus 165 ~~~~~~v~~~d~~~g~~~~~~-----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 165 ELAHHSVYRLPPDGSPLQRMA-----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp SSSCEEEEEECSSSCCCEEEE-----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred ccCCCeEEEEcCCCCcEEEEe-----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 12345666777788865532 12334567888875 5666554 789999998654211 1112234
Q ss_pred CCceEEEEeeceeEEEEecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 322 TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 322 hpsAfifLy~sqlFlSfsd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
.|..+.+=...+++++- .+.|.+|+++|+++..+.-+. ...++..++|++.|...+.+
T Consensus 240 ~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~~------~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTPG------TASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp CCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECSS------CCCEEEECTTSCEEEEEETT
T ss_pred CCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECCC------ceeEEEEeCCCCEEEEEcCC
Confidence 56665443334666665 456999999999998876543 35678888999877766654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00053 Score=60.97 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=97.2
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
|.+|.+.+.. .++.+..|| .+.+.+.+.. +..+..+.+. +|.+.+. +.+ |..++. +|+.+..+..
T Consensus 28 d~~g~l~v~t-~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~---t~~---l~~~d~-~g~~~~~~~~--- 95 (330)
T 3hxj_A 28 AKNGTIYLGS-SNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFG---SDK---VYAINP-DGTEKWRFDT--- 95 (330)
T ss_dssp CTTSCEECSS-TTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCS---SCE---EEEECC-CGGGGGGSCC---
T ss_pred ccCCeEEEEc-CCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEe---cCc---EEEECC-CCcEEEEEEC---
Confidence 3466666543 345566777 7777665433 3355667775 7775442 223 777885 8888776431
Q ss_pred cCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEEecCeEEEEecCCceeeeec
Q 015220 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNFRGELVTSFE 357 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSfsd~tI~iWn~~Gel~~s~e 357 (411)
.........+..+.+++...+..|..+|.. ++..--..+.- ....-.++. ...+++...++.|..||..|+++..+.
T Consensus 96 ~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~-~~~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~ 173 (330)
T 3hxj_A 96 KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKK-AIYATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFK 173 (330)
T ss_dssp -----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSS-CCCSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEE
T ss_pred CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCC-ceeeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEe
Confidence 222233344558888888889999999998 55443111111 111112333 335666557799999999998877665
Q ss_pred cccccCCCCccceEEEcCCCCEEEEE
Q 015220 358 DHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 358 ~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
-+.. .+..+++.+||.+.++.
T Consensus 174 ~~~~-----~~~~~~~d~~g~l~v~t 194 (330)
T 3hxj_A 174 TNDA-----ITSAASIGKDGTIYFGS 194 (330)
T ss_dssp CSSC-----CCSCCEECTTCCEEEES
T ss_pred cCCC-----ceeeeEEcCCCEEEEEe
Confidence 4322 56667777777766654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.023 Score=58.98 Aligned_cols=267 Identities=11% Similarity=0.119 Sum_probs=150.5
Q ss_pred eccceehhhhccccceeeecccccEEEEEeCCCCc----------eEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADE----------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 103 ~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e----------vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
.+.+.|++.+..|.-.|+|..||+.+=........ +-+++-|. ++.|++.+ .| ..|.| ++
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~---~d--g~l~a--lD- 133 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGT---LD--GRLIA--LD- 133 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEEC---TT--SEEEE--EE-
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--CCEEEEEc---CC--CEEEE--EE-
Confidence 35788888888999999999999998877764331 11332232 23343322 12 22333 21
Q ss_pred hhhhhCCCCCCCcceeecc---------cCCCCeEEeeCCCCeEEEeecC-----CCeEEEEEeeCceEEEEecc---C-
Q 015220 173 EYIRRGKPDAGFALFESES---------LKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD---K- 234 (411)
Q Consensus 173 ~~i~~gk~~~~~~LF~~~~---------l~~PgfvEFDd~NGkiLt~~~~-----ds~ykVWdL~~Ys~iysLs~---~- 234 (411)
..-|+ .+.+... ...| .| .+|++++.... ++.+..||.+|.+++-+... +
T Consensus 134 --~~tG~-----~~W~~~~~~~~~~~~~~~~P-~v----~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p 201 (668)
T 1kv9_A 134 --AKTGK-----AIWSQQTTDPAKPYSITGAP-RV----VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP 201 (668)
T ss_dssp --TTTCC-----EEEEEECSCTTSSCBCCSCC-EE----ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred --CCCCC-----EeeeeccCCCCCcceecCCC-EE----ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCC
Confidence 12222 2322211 1122 12 26777775543 68899999999998865531 1
Q ss_pred c-----------------------------eeEEEEe--CCEEEEEEecCCC----------------ceeeEEEEecCC
Q 015220 235 N-----------------------------VQEIKIS--PGIMLLIFTKASG----------------HVPLKILSIEDG 267 (411)
Q Consensus 235 ~-----------------------------VqeIkIS--dG~~Lai~q~t~~----------------~ipiKIl~I~tG 267 (411)
. ...+.+. .+++ .+...... ...|.-+|+.||
T Consensus 202 ~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~v-y~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG 280 (668)
T 1kv9_A 202 ALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLL-YVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG 280 (668)
T ss_dssp TSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEE-EEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred CccccccccccccccCCccceeeeCCCCccccceEEcCCCCEE-EEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC
Confidence 0 0124454 3443 22221110 113889999999
Q ss_pred cEEeEeeeccccC-------Ccceeeeee-cc----eeEEeecCceeeEEEcccceEEE------------eeccccCC-
Q 015220 268 TVLKSFNHLLHRN-------KKVDFIEQF-NE----KLLVKQENENLQILDVRNFELTE------------VSRTEFMT- 322 (411)
Q Consensus 268 ~~L~t~~~LL~h~-------K~I~FLE~~-~e----kllIKQe~~~LkI~dL~t~e~~~------------v~~T~f~h- 322 (411)
++++.+.. -+|. .++-..++. .+ .+++.+.+..+-++|..||+.+- +.. ..+.
T Consensus 281 ~~~W~~~~-~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~-~~g~p 358 (668)
T 1kv9_A 281 KLAWHYQV-TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL-ATGRP 358 (668)
T ss_dssp CEEEEEES-STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT-TTCCE
T ss_pred ceeeEeec-CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc-ccCCc
Confidence 99998763 2221 233333322 22 26777789999999999999872 100 0000
Q ss_pred --------------------------Cce------EEEEeecee-----------------EE-----------EE-ecC
Q 015220 323 --------------------------PSA------FIFLYENQL-----------------FL-----------TF-RNR 341 (411)
Q Consensus 323 --------------------------psA------fifLy~sql-----------------Fl-----------Sf-sd~ 341 (411)
|-| .+++..++. ++ .. .++
T Consensus 359 ~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g 438 (668)
T 1kv9_A 359 VEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG 438 (668)
T ss_dssp EECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE
T ss_pred cccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccc
Confidence 011 112211111 00 00 248
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|..||+. |+.+=+...+.. . ....++..+++++.++.|. .+..+|..|||.+
T Consensus 439 ~l~A~D~~tG~~~W~~~~~~~-----~-~~~~~~t~gg~vf~g~~dg----------~l~a~d~~tG~~l 492 (668)
T 1kv9_A 439 ALLAWDPVKQKAAWKVPYPTH-----W-NGGTLSTAGNLVFQGTAAG----------QMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEETTTTEEEEEEEESSS-----C-CCCEEEETTTEEEEECTTS----------EEEEEETTTCCEE
T ss_pred eEEEEeCCCCcEEEEccCCCC-----C-cCceeEeCCCEEEEECCcc----------cchhhhhhcChhh
Confidence 89999998 998877765443 1 2234556788999987765 9999999999975
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0015 Score=65.01 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=92.1
Q ss_pred ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCc---------EEeEeeeccccCCcceeeeeecceeEEeecCceee
Q 015220 235 NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGT---------VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303 (411)
Q Consensus 235 ~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~---------~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~Lk 303 (411)
.+.-+.+| .|. ++...+. -++||++++.+ .... .+....+ |..|.. .++.|...++..|+
T Consensus 39 ~~nlLais~~~gl-l~a~~~~----~l~v~~~~~l~~~~~~~~~~~~~~--~~~~lp~-V~~l~f-d~~~L~v~~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKSL-FVAASGS----KAVVGELQLLRDHITSDSTPLTFK--WEKEIPD-VIFVCF-HGDQVLVSTRNALY 109 (388)
T ss_dssp CCBCEEEETTTTE-EEEEETT----EEEEEEHHHHHHHHHSSSCCCCCS--EEEECTT-EEEEEE-ETTEEEEEESSEEE
T ss_pred cccEEEEcCCCCE-EEEeCCC----EEEEEEhhHhhhhhccccccccce--EEeeCCC-eeEEEE-CCCEEEEEcCCcEE
Confidence 46666777 455 4444443 56678887665 1111 1223445 888888 66665555889999
Q ss_pred EEEcccceEEEeeccccCCCceEEEEeec--eeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEE
Q 015220 304 ILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (411)
Q Consensus 304 I~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i 380 (411)
+||+.+-..-. +...|...+..+.-. .+.+.-.||++.+||+. |.+.. |.. .+..+..||+| +
T Consensus 110 v~dv~sl~~~~---~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~-----~Vs~v~WSpkG--~ 175 (388)
T 1xip_A 110 SLDLEELSEFR---TVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQ-----NVTSFDVTNSQ--L 175 (388)
T ss_dssp EEESSSTTCEE---EEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEE-----SEEEEEECSSE--E
T ss_pred EEEchhhhccC---ccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccC-----CceEEEEcCCc--e
Confidence 99998754322 222223333222211 33333499999999998 66542 444 78999999999 6
Q ss_pred EEEecCCCCCccccCCceEEEeeecceee
Q 015220 381 ISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 381 iS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.|++|. +|.+|+..++++
T Consensus 176 ~vg~~dg----------~i~~~~~~~~~~ 194 (388)
T 1xip_A 176 AVLLKDR----------SFQSFAWRNGEM 194 (388)
T ss_dssp EEEETTS----------CEEEEEEETTEE
T ss_pred EEEEcCC----------cEEEEcCCCccc
Confidence 7898886 999999998875
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0084 Score=57.45 Aligned_cols=170 Identities=12% Similarity=0.094 Sum_probs=113.7
Q ss_pred CceEEEEeccC---ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee-cC
Q 015220 224 NYTMLYSISDK---NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-EN 299 (411)
Q Consensus 224 ~Ys~iysLs~~---~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ-e~ 299 (411)
+|+.+.++.++ ..|-+.++|| .|..+......+.|.++|++||+++.+.. |+..---.=|.+.++.+++.- .+
T Consensus 30 ~~~vv~~~phd~~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~--l~~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 30 DYQIVHSYPHDTKAFTEGFFYRNG-YFYESTGLNGRSSIRKVDIESGKTLQQIE--LGKRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEEEECCTTCEEEEEEEETT-EEEEEEEETTEEEEEEECTTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESSS
T ss_pred ceEEEEEecCCCCcccceEEEECC-EEEEECCCCCCceEEEEECCCCcEEEEEe--cCCccceeEEEEeCCEEEEEEeeC
Confidence 46677777766 5688888887 57888888888999999999999999864 332111133667788886665 58
Q ss_pred ceeeEEEcccceEEE-eeccccCCCceEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCC
Q 015220 300 ENLQILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (411)
Q Consensus 300 ~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq 377 (411)
+.+-+||..+.+.+. ++-. +.+.++. -....+|+|=.+++|.++|+. ++.+++.+=-..-.|--..|-+-.. ||
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~--~eG~glt-~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G 182 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYD--GEGWGLT-HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG 182 (262)
T ss_dssp SEEEEEETTTCCEEEEEECS--SCCCCEE-ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECccCcEEEEEECC--CCceEEe-cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence 899999999988876 3222 2333333 234577777667789999998 8887765432111111133434333 77
Q ss_pred CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 378 DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 378 d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+-+.-..++ +|-+-|..|||++
T Consensus 183 ~lyan~w~~~----------~I~vIDp~tG~V~ 205 (262)
T 3nol_A 183 EIFANVWQTN----------KIVRIDPETGKVT 205 (262)
T ss_dssp EEEEEETTSS----------EEEEECTTTCBEE
T ss_pred EEEEEEccCC----------eEEEEECCCCcEE
Confidence 7555443444 8888888888875
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.43 E-value=0.016 Score=57.75 Aligned_cols=187 Identities=12% Similarity=0.034 Sum_probs=123.7
Q ss_pred CCeEEEeecC----CCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCC-------CceeeEEEEecCCcEE
Q 015220 204 NGKVLTYSAQ----DSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKAS-------GHVPLKILSIEDGTVL 270 (411)
Q Consensus 204 NGkiLt~~~~----ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~-------~~ipiKIl~I~tG~~L 270 (411)
-.++.+.... ++.+-|.|..+.+.+-+|. +..-. +.+| ||..|.+.+.-. ..-.+.+||..|++++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~ 122 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT 122 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE
Confidence 4466666665 7899999999999999998 34445 9999 898888876422 2356999999999999
Q ss_pred eEeeeccccC------Ccceeeeeeccee--EEeec--CceeeEEEcccceEEEeeccccCCCc-eEEEEeeceeEEEE-
Q 015220 271 KSFNHLLHRN------KKVDFIEQFNEKL--LVKQE--NENLQILDVRNFELTEVSRTEFMTPS-AFIFLYENQLFLTF- 338 (411)
Q Consensus 271 ~t~~~LL~h~------K~I~FLE~~~ekl--lIKQe--~~~LkI~dL~t~e~~~v~~T~f~hps-AfifLy~sqlFlSf- 338 (411)
.++. ++.. ....-+++++|+- ++... ++.+.++|+.+++... |.- .|. +-++=.-.+.|++.
T Consensus 123 ~~I~--v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~---tI~-v~g~~~~~P~g~~~~~~~~ 196 (386)
T 3sjl_D 123 ADIE--LPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR---MLD-VPDCYHIFPTAPDTFFMHC 196 (386)
T ss_dssp EEEE--ETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE---EEE-CCSEEEEEEEETTEEEEEE
T ss_pred EEEE--CCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE---EEE-CCCcceeecCCCceeEEEC
Confidence 9954 3321 2455688887754 77764 6889999999999876 331 222 22222233567777
Q ss_pred ecCeEEEEecC--CceeeeeccccccCCC-CccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 339 RNRTVAVWNFR--GELVTSFEDHLLWHPD-CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 sd~tI~iWn~~--Gel~~s~e~H~~~~~~-c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.|+++.+.++. |....+-..+..-... ...|-.|.++||.+++.-+ + |++.+.|..+++
T Consensus 197 ~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~----------g~V~v~d~~~~~ 258 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-T----------GKIHQIDLSSGD 258 (386)
T ss_dssp TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-T----------SEEEEEECTTSS
T ss_pred CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-C----------CEEEEEECCCCc
Confidence 89999999996 5654333322221111 1233456678998766332 2 477777776654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.027 Score=50.95 Aligned_cols=198 Identities=7% Similarity=0.011 Sum_probs=114.1
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
..||.=.-||.....++.....++.+..|+...-...+......+..+.++ +|.+++ .+.... -|.+|+.. |+..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v-~~~~~~--~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVH-CEHGRR--AITRSDAD-GQAH 119 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEE-EETTTT--EEEEECTT-SCEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEE-EECCCC--EEEEECCC-CCEE
Confidence 345555667754445778888888888898843334455556678889998 787544 433322 35567764 7643
Q ss_pred eEeeeccc-cCCcceeeeeecceeEEee-------------------cCceeeEEEcccceEEEeeccccCCCceEEEEe
Q 015220 271 KSFNHLLH-RNKKVDFIEQFNEKLLVKQ-------------------ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY 330 (411)
Q Consensus 271 ~t~~~LL~-h~K~I~FLE~~~ekllIKQ-------------------e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy 330 (411)
.-....-+ +...++-+...+++-+.-. ....|..||..+++...+. .+..|..+.|-.
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp 197 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP 197 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECT
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC
Confidence 32111111 1123455777776654441 2467888998888887765 444555543322
Q ss_pred ec-eeEEEEec------CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 331 EN-QLFLTFRN------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 331 ~s-qlFlSfsd------~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.. .+|++-+. +.|.+|++.++-+........ .+.-..+.+++++||.+.++. .. .|.+||
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~~--~~----------gv~~~~ 264 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWSSS--GT----------GVCVFD 264 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEECC--SS----------EEEEEC
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEEec--CC----------cEEEEC
Confidence 22 46666554 789999998432321111100 011234578999999976653 11 477777
Q ss_pred ecceee
Q 015220 404 LMFVTC 409 (411)
Q Consensus 404 i~tGk~ 409 (411)
. +|+.
T Consensus 265 ~-~g~~ 269 (305)
T 3dr2_A 265 S-DGQL 269 (305)
T ss_dssp T-TSCE
T ss_pred C-CCCE
Confidence 6 4543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.025 Score=53.46 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=113.0
Q ss_pred CceEEEEeccC---ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee-cC
Q 015220 224 NYTMLYSISDK---NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-EN 299 (411)
Q Consensus 224 ~Ys~iysLs~~---~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ-e~ 299 (411)
+|+.+.+.+++ ..|=+.+++|. |..+......+.|.++|++||+++.+.. |+...--+-+.+.++.+++-- .+
T Consensus 8 ~~~v~~~~phd~~~ftqGL~~~~~~-LyestG~~g~S~v~~vD~~tgkv~~~~~--l~~~~fgeGi~~~~~~ly~ltw~~ 84 (243)
T 3mbr_X 8 GYRVVKRYPHDTTAFTEGLFYLRGH-LYESTGETGRSSVRKVDLETGRILQRAE--VPPPYFGAGIVAWRDRLIQLTWRN 84 (243)
T ss_dssp CEEEEEEEECCTTCCEEEEEEETTE-EEEEECCTTSCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEESSS
T ss_pred ceEEEEEcCCCCccccccEEEECCE-EEEECCCCCCceEEEEECCCCCEEEEEe--CCCCcceeEEEEeCCEEEEEEeeC
Confidence 56777777766 68888999875 7788888888999999999999999864 232222234667777775543 68
Q ss_pred ceeeEEEcccceEEE-eeccccCCCceEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCC
Q 015220 300 ENLQILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (411)
Q Consensus 300 ~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq 377 (411)
+.+.+||..+.+.+. ++.. +++.++. -....||+|=.+++|.++|+. .+.+++.+=...-.|--..|-+-- .||
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~--~~Gwglt-~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~-~~G 160 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYP--GEGWALT-SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW-VNG 160 (243)
T ss_dssp SEEEEEETTTTEEEEEEECS--SCCCEEE-ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE-ETT
T ss_pred CEEEEEECCcCcEEEEEeCC--CCceEEe-eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE-eCC
Confidence 899999999988876 3332 3443332 334578888788899999998 787776653221011112232221 267
Q ss_pred CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 378 DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 378 d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+-+--..++ .|-+-|..|||++
T Consensus 161 ~lyanvw~s~----------~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 161 ELLANVWLTS----------RIARIDPASGKVV 183 (243)
T ss_dssp EEEEEETTTT----------EEEEECTTTCBEE
T ss_pred EEEEEECCCC----------eEEEEECCCCCEE
Confidence 6443332344 7778888888764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0087 Score=53.09 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=107.6
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEE--EEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
+.+|.+.+. ..++.+..||.+ .+.+ +.+....+..+.+. +|.+.+.. --|..++ .+|+.+..+. .
T Consensus 145 ~~~g~l~vg-t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t------~~l~~~d-~~g~~~~~~~---~ 212 (330)
T 3hxj_A 145 SEDGTIYVG-SNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS------DKVYAIN-PDGTEKWNFY---A 212 (330)
T ss_dssp CTTSCEEEE-CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES------SSEEEEC-TTSCEEEEEC---C
T ss_pred cCCCEEEEE-cCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe------CEEEEEC-CCCcEEEEEc---c
Confidence 447776663 345777788888 6655 34445577777784 77755443 4577888 8999988744 2
Q ss_pred cCCcceeeeeecc-eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEEecCeEEEEecCCceeeee
Q 015220 279 RNKKVDFIEQFNE-KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNFRGELVTSF 356 (411)
Q Consensus 279 h~K~I~FLE~~~e-kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSfsd~tI~iWn~~Gel~~s~ 356 (411)
....+..+...++ .+++...+..|..+|-...+.+..+.. -..+.. +.++ ...+++.-.++.|..+|..|+++.++
T Consensus 213 ~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~-~~~~~~-~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 213 GYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTG-KRIESS-PVIGNTDTIYFGSYDGHLYAINPDGTEKWNF 290 (330)
T ss_dssp SSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECS-SCCCSC-CEECTTSCEEEECTTCEEEEECTTSCEEEEE
T ss_pred CCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCC-CCcccc-ceEcCCCeEEEecCCCCEEEECCCCcEEEEE
Confidence 3355667777766 788888889999998544444443221 112222 2334 34677666777999999889988776
Q ss_pred ccccccCCCCccceEEEcCCCCEEEE
Q 015220 357 EDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 357 e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
.-. +-.+..+++.+||.+.|.
T Consensus 291 ~~~-----~~~~~~~~~d~~g~l~~g 311 (330)
T 3hxj_A 291 ETG-----SWIIATPVIDENGTIYFG 311 (330)
T ss_dssp ECS-----SCCCSCCEECTTCCEEEE
T ss_pred EcC-----CccccceEEcCCCEEEEE
Confidence 533 336788899999998874
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.03 Score=53.10 Aligned_cols=171 Identities=11% Similarity=0.017 Sum_probs=113.6
Q ss_pred eCceEEEEeccC---ceeEEEEeC-CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee-
Q 015220 223 KNYTMLYSISDK---NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ- 297 (411)
Q Consensus 223 ~~Ys~iysLs~~---~VqeIkISd-G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ- 297 (411)
.+|+.+.++... ..+-+.+++ | .|.+........-|.++|+.||+++.++. ++...-.+-+.+.++.+++..
T Consensus 7 ~~~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--l~~~~fgeGi~~~g~~lyv~t~ 83 (266)
T 2iwa_A 7 YIVEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHK--MDDSYFGEGLTLLNEKLYQVVW 83 (266)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEE--CCTTCCEEEEEEETTEEEEEET
T ss_pred cCceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEe--cCCCcceEEEEEeCCEEEEEEe
Confidence 356777777755 358899995 7 46666655567789999999999999854 343333334667788886665
Q ss_pred cCceeeEEEcccceEEE-eeccccCCCceE-EEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEc
Q 015220 298 ENENLQILDVRNFELTE-VSRTEFMTPSAF-IFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 374 (411)
Q Consensus 298 e~~~LkI~dL~t~e~~~-v~~T~f~hpsAf-ifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is 374 (411)
.++.+-++|..+++... ++-. .|+.. +.-....+|+|=.+++|.+.|+. .+.+++..=-..=.|--..|.+...
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g---~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ---MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC---SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC---CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 57899999999988776 3221 23332 33345578887778899999998 6777765521100111135566555
Q ss_pred CCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 375 SDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 375 ~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
||.+-+.-..+ ++|-+-|..|||++
T Consensus 161 -dg~lyvn~~~~----------~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 161 -NGEVWANIWQT----------DCIARISAKDGTLL 185 (266)
T ss_dssp -TTEEEEEETTS----------SEEEEEETTTCCEE
T ss_pred -CCEEEEecCCC----------CeEEEEECCCCcEE
Confidence 77654443333 38999999999874
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.023 Score=54.74 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=105.8
Q ss_pred eEEEEeccC---ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee-cCce
Q 015220 226 TMLYSISDK---NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENEN 301 (411)
Q Consensus 226 s~iysLs~~---~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ-e~~~ 301 (411)
+-+.++.++ ..|-+.++++. |.++...... |.++|++||+++.+. |+..---+=+.+.++.+++.- .++.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~-Ly~stG~~g~--v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGH-FFESTGHQGT--LRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTE-EEEEETTTTE--EEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESSSCE
T ss_pred EEEEEEcCCCccccceEEEECCE-EEEEcCCCCE--EEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEccCCE
Confidence 344455443 45777777764 6666666666 999999999999995 444221133677788886654 5889
Q ss_pred eeEEEcccceEEE-eeccccCCCceEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCE
Q 015220 302 LQILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (411)
Q Consensus 302 LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ 379 (411)
+.+||..+.+.+. ++.. +.+.++. -....||+|=.+++|.++|+. ++.+++.+=-..-.+--..|-+--. ||.+
T Consensus 118 v~V~D~~Tl~~~~ti~~~--~eGwGLt-~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS--GEGWGLC-YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEEETTTTEEEEEEECS--SCCCCEE-EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCC--CceeEEe-cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 9999999998886 3321 2232333 344578888778899999998 8888765432210111123333322 7865
Q ss_pred EEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 380 IISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 380 iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-+.-..++ +|-+-|..|||++
T Consensus 194 yanvw~s~----------~I~vIDp~TG~V~ 214 (268)
T 3nok_A 194 YANIWHSS----------DVLEIDPATGTVV 214 (268)
T ss_dssp EEEETTCS----------EEEEECTTTCBEE
T ss_pred EEEECCCC----------eEEEEeCCCCcEE
Confidence 54443444 8888888888875
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.051 Score=56.04 Aligned_cols=191 Identities=14% Similarity=0.133 Sum_probs=112.9
Q ss_pred eEEEeecCCCeEEEEEeeCc----eEEEEeccCc---------eeEEEEe-CCEEEEEEecC--CCceeeEEEEecCCcE
Q 015220 206 KVLTYSAQDSIYKVFDLKNY----TMLYSISDKN---------VQEIKIS-PGIMLLIFTKA--SGHVPLKILSIEDGTV 269 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Y----s~iysLs~~~---------VqeIkIS-dG~~Lai~q~t--~~~ipiKIl~I~tG~~ 269 (411)
+..+.+..++.+-|+|.++. +..-+|..++ -..+..+ ||+|+..+... +..--+-++|.+|+++
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 44455666788999999866 7778885333 3456777 78555443332 2334589999999999
Q ss_pred EeEeeeccc-cCCcceeeeeecceeEEeec--------------------CceeeEEEcccceEEE-eecc-ccCCCceE
Q 015220 270 LKSFNHLLH-RNKKVDFIEQFNEKLLVKQE--------------------NENLQILDVRNFELTE-VSRT-EFMTPSAF 326 (411)
Q Consensus 270 L~t~~~LL~-h~K~I~FLE~~~ekllIKQe--------------------~~~LkI~dL~t~e~~~-v~~T-~f~hpsAf 326 (411)
+++...--+ .....+|-=+-..+.++-++ ++.|.+||+.+++... +.-. .-..|..+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 998542101 11233344444556777775 8999999999987665 1111 01123333
Q ss_pred EEEeec---eeEEEEe------cCeEEEEecC-Cceee----ee-----ccccccCC------CCccceEEEcCCCCEEE
Q 015220 327 IFLYEN---QLFLTFR------NRTVAVWNFR-GELVT----SF-----EDHLLWHP------DCNTNNIYITSDQDLII 381 (411)
Q Consensus 327 ifLy~s---qlFlSfs------d~tI~iWn~~-Gel~~----s~-----e~H~~~~~------~c~~n~i~Is~Dqd~ii 381 (411)
.|+... ..|++-. +++|.+|..+ |++-. ++ ++.+.--| .-....|.||+||++|.
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY 336 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY 336 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence 342221 3455443 4577776666 43211 11 11110000 12457899999999998
Q ss_pred EEecCCCCCccccCCceEEEeeec
Q 015220 382 SYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 382 S~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
..+-.. |+|-++|+.
T Consensus 337 VSnrg~---------d~VavfdV~ 351 (462)
T 2ece_A 337 LSLWGI---------GEVRQYDIS 351 (462)
T ss_dssp EEETTT---------TEEEEEECS
T ss_pred EEeCCC---------CEEEEEEec
Confidence 877543 689888875
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.32 Score=50.02 Aligned_cols=55 Identities=9% Similarity=-0.031 Sum_probs=39.5
Q ss_pred cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++|..||+. |+.+=+..-+.. ....... ..+.+++.|+.|. .+..+|..|||.+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~-----~~~g~~~-tagglvf~g~~dg----------~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP-----LWAGVLA-TAGNLVFTGTGDG----------YFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-----CCSCCEE-ETTTEEEEECTTS----------EEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEecCCCC-----CcccceE-eCCCEEEEECCCC----------cEEEEECCCCCEE
Confidence 5789999998 998866654332 1222233 3567888888765 9999999999976
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.1 Score=52.48 Aligned_cols=168 Identities=12% Similarity=0.055 Sum_probs=109.2
Q ss_pred eEEEeecCC----CeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCC-------CceeeEEEEecCCcEEeE
Q 015220 206 KVLTYSAQD----SIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKAS-------GHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 206 kiLt~~~~d----s~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~-------~~ipiKIl~I~tG~~L~t 272 (411)
++.+..... +++-|.|+.+.+.+-+|. +..= .|.+| ||..|.+.+.-. ..-.|.++|..|++++++
T Consensus 86 ~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~ 164 (426)
T 3c75_H 86 RVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD 164 (426)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred EEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence 456665544 799999999999998887 3344 89999 898888887421 224799999999999998
Q ss_pred eeeccc-c-----CCcceeeeeecce--eEEeec--CceeeEEEcccceEEEeeccccCCCce-EEEEeeceeEEEE-ec
Q 015220 273 FNHLLH-R-----NKKVDFIEQFNEK--LLVKQE--NENLQILDVRNFELTEVSRTEFMTPSA-FIFLYENQLFLTF-RN 340 (411)
Q Consensus 273 ~~~LL~-h-----~K~I~FLE~~~ek--llIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsA-fifLy~sqlFlSf-sd 340 (411)
+. ++ . -....-+.+++|+ +++..+ ++.+.++|+.+++... +.- -|.. .++-.....|+++ .|
T Consensus 165 I~--v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~---~I~-v~g~~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 165 IE--LPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR---MLD-VPDCYHIFPASPTVFYMNCRD 238 (426)
T ss_dssp EE--ETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE---EEE-CCSEEEEEEEETTEEEEEETT
T ss_pred EE--CCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE---EEE-cCCceeeccCCCcEEEEEcCC
Confidence 55 33 1 1335567888765 577764 5789999999998876 221 1222 2222234677888 78
Q ss_pred CeEEEEecC-Cceeeeeccccc-cCCCCccceEEEcCCCCEEE
Q 015220 341 RTVAVWNFR-GELVTSFEDHLL-WHPDCNTNNIYITSDQDLII 381 (411)
Q Consensus 341 ~tI~iWn~~-Gel~~s~e~H~~-~~~~c~~n~i~Is~Dqd~ii 381 (411)
+++.+.++. |....+.. +.. -........+.+++|++.+.
T Consensus 239 G~~~~V~~~~~~v~~~~~-~~~~v~~~p~~~~~~~~~dg~~~~ 280 (426)
T 3c75_H 239 GSLARVDFADGETKVTNT-EVFHTEDELLINHPAFSLRSGRLV 280 (426)
T ss_dssp SSEEEEECCTTCCEEEEC-CCCSCTTSCBCSCCEECTTTCEEE
T ss_pred CCEEEEECCCCcEEEEee-eeeccCCCceeeEeeecCCCCEEE
Confidence 888888875 55443211 110 01112233456688877554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.2 Score=48.18 Aligned_cols=198 Identities=9% Similarity=0.054 Sum_probs=123.4
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEec
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
..+.+|-=+.||..++++.......+.+..|++.+......+.. .....+.+. .|. |.+.+....+ |.+.++.
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~-lY~~d~~~~~--I~~~~~d 189 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK-LYWTDSGTSR--IEVANLD 189 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTE-EEEEETTTTE--EEECBTT
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCe-EEEEcCCCCe--EEEEeCC
Confidence 45778999999999999999999999999999987653333332 244567777 344 4444444443 3445554
Q ss_pred CCcEEeEeeeccccCCcceeeeee--cceeEEeec-C-ceeeEEEcccceEEEeeccccCCCceEEEE-eeceeEEEE-e
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQE-N-ENLQILDVRNFELTEVSRTEFMTPSAFIFL-YENQLFLTF-R 339 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQe-~-~~LkI~dL~t~e~~~v~~T~f~hpsAfifL-y~sqlFlSf-s 339 (411)
|+....+. ...-....-|++. ...+++... + +.|..+|+....+..+-.+.+..|..+.+= ....||++= .
T Consensus 190 -g~~~~~l~--~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 190 -GAHRKVLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp -SCSCEEEE--CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred -CCceEEee--cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECC
Confidence 44333311 1222345667777 456777653 3 689999987766666555666677776554 345788887 6
Q ss_pred cCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 340 NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 340 d~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.+.|..++++|.-.+.+-...+. .-..|++ .++.+.++-.. +++|...|..+|+
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~----~P~giav-~~~~ly~td~~----------~~~V~~~~~~~G~ 320 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGLP----HPFAITV-FEDSLYWTDWH----------TKSINSANKFTGK 320 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSCS----SEEEEEE-ETTEEEEEETT----------TTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCeeEEEEECCCC----CceEEEE-ECCEEEEeeCC----------CCeEEEEECCCCc
Confidence 78999999998755544322222 3356667 23344444322 3467666666664
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.56 Score=47.92 Aligned_cols=188 Identities=18% Similarity=0.177 Sum_probs=103.7
Q ss_pred ccceehhhhc-cccceeeec-ccccEEEEEeCCCCc----------eEEEEEeecCCCeEEEEEeEecCCCceeeeEeee
Q 015220 104 ARDIVFALAQ-SGVCAAFCR-ETNQRICFLNVTADE----------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (411)
Q Consensus 104 a~dii~~L~~-sG~c~af~~-~t~~~ic~lN~s~~e----------vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 171 (411)
+.+.|++.+. +|.-.|+|. .||+.+=........ +-+++-+. ++.|++.+ .| ..|.| ++
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~---~d--g~l~a--lD 131 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQ---AN--GHLLA--LD 131 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEEC---TT--SEEEE--EE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE--CCEEEEEe---CC--CEEEE--EE
Confidence 5788888888 898999999 999998877665432 12333332 33444321 11 23333 21
Q ss_pred hhhhhhCCCCCCCcceeec--------ccCCCCeEEeeCCCCeEEEeecC-----CCeEEEEEeeCceEEEEeccC-ce-
Q 015220 172 IEYIRRGKPDAGFALFESE--------SLKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISDK-NV- 236 (411)
Q Consensus 172 ~~~i~~gk~~~~~~LF~~~--------~l~~PgfvEFDd~NGkiLt~~~~-----ds~ykVWdL~~Ys~iysLs~~-~V- 236 (411)
.+-|+ .+.+.. .+..+-.| .+|++++.... ++.+..+|.+|.+.+-+..-. ..
T Consensus 132 ---~~tG~-----~~W~~~~~~~~~~~~~~~~P~v----~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~ 199 (571)
T 2ad6_A 132 ---AKTGK-----INWEVEVCDPKVGSTLTQAPFV----AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDD 199 (571)
T ss_dssp ---TTTCC-----EEEEEECCCGGGTCBCCSCCEE----ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHH
T ss_pred ---CCCCC-----EEEEecCCCCCccceeccCCEE----ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcc
Confidence 12222 232211 11112222 15777775553 789999999999988655422 11
Q ss_pred --------------------------------------eEEEEe--CCEEEEEE-ecC--------CCc---eeeEEEEe
Q 015220 237 --------------------------------------QEIKIS--PGIMLLIF-TKA--------SGH---VPLKILSI 264 (411)
Q Consensus 237 --------------------------------------qeIkIS--dG~~Lai~-q~t--------~~~---ipiKIl~I 264 (411)
..+.+. .|.+.+-. ++. ... ..|.-+|.
T Consensus 200 ~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~ 279 (571)
T 2ad6_A 200 SVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDL 279 (571)
T ss_dssp HHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEET
T ss_pred ccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEec
Confidence 113333 34433322 111 111 24888999
Q ss_pred cCCcEEeEeeecccc--------CCcceeeeee-cc---e-eEEeecCceeeEEEcccceEEE
Q 015220 265 EDGTVLKSFNHLLHR--------NKKVDFIEQF-NE---K-LLVKQENENLQILDVRNFELTE 314 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h--------~K~I~FLE~~-~e---k-llIKQe~~~LkI~dL~t~e~~~ 314 (411)
.||++++.+.. -+| +.|+ ..... .+ + ++..+.+..+-++|..+|+.+-
T Consensus 280 ~tG~~~W~~~~-~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 280 DTGMAKWGYQK-TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp TTCCEEEEEES-STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCcEEEEecC-CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 99999998663 222 2222 22222 22 2 3456677899999999998754
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.31 Score=47.82 Aligned_cols=161 Identities=9% Similarity=0.056 Sum_probs=102.6
Q ss_pred eecccCCCCeEEeeC-CCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCcee-eEEEE
Q 015220 188 ESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVP-LKILS 263 (411)
Q Consensus 188 ~~~~l~~PgfvEFDd-~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ip-iKIl~ 263 (411)
+...+.+|.++-+|. .+|.+.+.... +.+.++|+.+.+....+. ...-..|.++ +|.+|.+.+...+.+. .-+|-
T Consensus 132 ~~~~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 132 DCGGFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp GCBCCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred HccCCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence 344689999999997 57888887766 889999998865443333 3367789998 7876666665443332 22333
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeec--ceeEEee-cCceeeEEEcccceEEEeecc-ccCCCceEEEEeece-eEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQ-ENENLQILDVRNFELTEVSRT-EFMTPSAFIFLYENQ-LFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQ-e~~~LkI~dL~t~e~~~v~~T-~f~hpsAfifLy~sq-lFlSf 338 (411)
..+|...... .+..-+....+.+.+ +.+++.. +++.|..+|..+++...+... ....|..+.+-...+ +|++-
T Consensus 211 ~~~g~~~~~~--~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 211 TRESGFKVIT--ELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp EGGGTSCSEE--EEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred eCCCceeeee--eeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 3456544111 122334466788886 4556654 778999999998876432211 223455444333334 78887
Q ss_pred -ecCeEEEEecCCc
Q 015220 339 -RNRTVAVWNFRGE 351 (411)
Q Consensus 339 -sd~tI~iWn~~Ge 351 (411)
.++.|..++++|+
T Consensus 289 ~~~~~I~~~~~d~~ 302 (430)
T 3tc9_A 289 VNQHYILRSDYDWK 302 (430)
T ss_dssp TTTTEEEEEEEETT
T ss_pred CCCCEEEEEeCCcc
Confidence 7789999998864
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.08 Score=55.17 Aligned_cols=192 Identities=12% Similarity=0.086 Sum_probs=111.1
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccCc-------------eeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-------------VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~-------------VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
+|++.+... ++.+.-+|.+|.+.+-+..-.. -..+.+.++.+++... .-.|..||..||+++
T Consensus 77 ~g~vyv~~~-~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSAS-WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECG-GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CCEEEEECC-CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 555555443 4566667888888774443220 1234556776544321 134778999999999
Q ss_pred eEeeeccccC--Ccce-eeeeecceeEEeec------CceeeEEEcccceEEE-eeccc------------------cC-
Q 015220 271 KSFNHLLHRN--KKVD-FIEQFNEKLLVKQE------NENLQILDVRNFELTE-VSRTE------------------FM- 321 (411)
Q Consensus 271 ~t~~~LL~h~--K~I~-FLE~~~ekllIKQe------~~~LkI~dL~t~e~~~-v~~T~------------------f~- 321 (411)
+++...-... ..+. .-.+..+.+++-.. +..|..||..||+..- ..... |.
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred eeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 9976320100 1111 12245677777664 4789999999998763 11100 00
Q ss_pred ---------CCc--eEEEEe--eceeEEEEecC-------------------eEEEEecC-Cceeeeec--cccccCCCC
Q 015220 322 ---------TPS--AFIFLY--ENQLFLTFRNR-------------------TVAVWNFR-GELVTSFE--DHLLWHPDC 366 (411)
Q Consensus 322 ---------hps--AfifLy--~sqlFlSfsd~-------------------tI~iWn~~-Gel~~s~e--~H~~~~~~c 366 (411)
.+. .-..+. ...+|+...++ +|..+|.+ |+++-++. .|-.|.-+.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 000 011121 22455554443 59999999 99886544 466564333
Q ss_pred ccceEE--EcCCC---CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 367 NTNNIY--ITSDQ---DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 367 ~~n~i~--Is~Dq---d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
...-+. ++.|| ++++.++++ |.+.++|..|||++
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~----------G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKN----------GFFFVLDRTNGKFI 350 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTT----------SEEEEEETTTCCEE
T ss_pred CCCcEEEecccCCcEeeEEEEECCC----------CEEEEEECCCCCEe
Confidence 222222 23388 788888776 49999999999985
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.49 Score=44.83 Aligned_cols=198 Identities=10% Similarity=0.069 Sum_probs=122.5
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEec
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
..+.+|--+.||..++++.......+.+..+++.+...-..+.. .....+.+. +|. |.+.+...++ |.+.++.
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~-ly~~d~~~~~--I~~~~~d 146 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK-LYWTDSGTSR--IEVANLD 146 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE-EEEEETTTTE--EEEEETT
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCe-EEEEcCCCCe--EEEEcCC
Confidence 35678999999999999999999999999999987653333332 255667777 454 4444444443 4455654
Q ss_pred CCcEEeEeeeccccCCcceeeeeec--ceeEEeec-C-ceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-e
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQE-N-ENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-R 339 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe-~-~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-s 339 (411)
|+....+. ...-....-|++.+ ..+++... + +.|..+|+....+..+-.+.+..|.++.+=+ ...+|++= .
T Consensus 147 -G~~~~~l~--~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 147 -GAHRKVLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp -SCSCEEEE--CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred -CCceEEEE--eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence 44333311 12223456688874 56666653 3 6888899877666655455666777766543 55888887 6
Q ss_pred cCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 340 NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 340 d~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.++|..++++|.-.+.+-...+. .-..|++. ++.+.++-.. +++|...|-.+|+
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~~~----~P~giav~-~~~ly~td~~----------~~~V~~~~~~~G~ 277 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQGLP----HPFAITVF-EDSLYWTDWH----------TKSINSANKFTGK 277 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCS----SEEEEEEE-TTEEEEEETT----------TTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCceEEEEeCCCC----CceEEEEE-CCEEEEecCC----------CCeEEEEEccCCC
Confidence 78999999998755544322222 33466662 3344444222 2356555555554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.19 Score=52.47 Aligned_cols=192 Identities=14% Similarity=0.124 Sum_probs=111.2
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC---c----------eeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---N----------VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~---~----------VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
+|++.+.. .++.+.-+|.+|.+.+-+.... + -..+.+.+|.+++-. ..-.|.-||..||+++
T Consensus 70 ~g~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~----~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 70 DGVMYTTG-PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV----LDGRLEAIDAKTGQRA 144 (689)
T ss_dssp TTEEEEEC-GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CCEEEEEc-CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc----cCCEEEEEECCCCCEe
Confidence 55555543 3556777788888887555422 1 012455677654432 1234788999999999
Q ss_pred eEeeeccccCC--cce-eeeeecceeEEeec------CceeeEEEcccceEEEeeccccCCCc-----------------
Q 015220 271 KSFNHLLHRNK--KVD-FIEQFNEKLLVKQE------NENLQILDVRNFELTEVSRTEFMTPS----------------- 324 (411)
Q Consensus 271 ~t~~~LL~h~K--~I~-FLE~~~ekllIKQe------~~~LkI~dL~t~e~~~v~~T~f~hps----------------- 324 (411)
+++....+... .+. .-.+.++.+++-.. +..|..||..||+..---.+.-+.|.
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 98764211110 111 11234667777553 46899999999996531111101111
Q ss_pred -----------e--EEEEe-ec-eeEEEEecC-------------------eEEEEecC-Cceeeeecc--ccccCCCCc
Q 015220 325 -----------A--FIFLY-EN-QLFLTFRNR-------------------TVAVWNFR-GELVTSFED--HLLWHPDCN 367 (411)
Q Consensus 325 -----------A--fifLy-~s-qlFlSfsd~-------------------tI~iWn~~-Gel~~s~e~--H~~~~~~c~ 367 (411)
. -..+. .. .+|+...|+ +|..||.+ |+++=++.. |..|.-++.
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 0 11221 22 444444554 49999999 998876654 666654443
Q ss_pred cceEEE--cCCCC---EEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 368 TNNIYI--TSDQD---LIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 368 ~n~i~I--s~Dqd---~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
--.+.. ..||+ .++.++++ |.+.++|..|||++
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~----------G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKN----------GFFYVIDRATGELL 342 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTT----------SEEEEEETTTCCEE
T ss_pred CCcEEEeeccCCcEEEEEEEECCC----------CeEEEEECCCCCEe
Confidence 222221 22565 77777666 59999999999986
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.22 Score=51.77 Aligned_cols=191 Identities=13% Similarity=0.058 Sum_probs=109.6
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccCc-------------eeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-------------VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~-------------VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
+|++.+.. .++.+.-+|.+|.+.+-+..... -..+.+.+|.+++.. ..-.|.-||.+||+++
T Consensus 66 ~g~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSM-SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT----LDGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEE-GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CCEEEEEC-CCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEc----CCCEEEEEECCCCCEe
Confidence 44544433 24556666777777664443210 122445566654432 1234778999999999
Q ss_pred eEeeeccccCC--cce-eeeeecceeEEeecC------ceeeEEEcccceEEEeeccccCCCce----------------
Q 015220 271 KSFNHLLHRNK--KVD-FIEQFNEKLLVKQEN------ENLQILDVRNFELTEVSRTEFMTPSA---------------- 325 (411)
Q Consensus 271 ~t~~~LL~h~K--~I~-FLE~~~ekllIKQe~------~~LkI~dL~t~e~~~v~~T~f~hpsA---------------- 325 (411)
+++... .+.. .+. .-.+..+.+++-..+ ..|..||..||+..---.+.-..|..
T Consensus 141 W~~~~~-~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 141 WSQQTT-DPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp EEEECS-CTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred eeeccC-CCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 997631 1100 010 112346777776653 68999999999876411111011110
Q ss_pred --------------EEEEe-e-ceeEEEEecC-------------------eEEEEecC-Cceeeeec--cccccCCCCc
Q 015220 326 --------------FIFLY-E-NQLFLTFRNR-------------------TVAVWNFR-GELVTSFE--DHLLWHPDCN 367 (411)
Q Consensus 326 --------------fifLy-~-sqlFlSfsd~-------------------tI~iWn~~-Gel~~s~e--~H~~~~~~c~ 367 (411)
-..+. . ..+|+...++ +|..+|.+ |+++=++. .|..|.-++.
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 01221 2 2445554554 49999998 99887654 4777765554
Q ss_pred cceEE--EcCCCC---EEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 368 TNNIY--ITSDQD---LIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 368 ~n~i~--Is~Dqd---~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.-.+. +..||+ +++.++++ |.+.++|..|||++
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~----------G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKN----------GFFYVLDRTNGKLI 337 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTT----------SEEEEEETTTCCEE
T ss_pred CCcEEEEeccCCcEEEEEEEECCC----------CEEEEEECCCCCEe
Confidence 33222 234776 67777665 59999999999986
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.81 Score=47.21 Aligned_cols=210 Identities=11% Similarity=0.070 Sum_probs=123.6
Q ss_pred eecccCCCCeEEeeCC-CCeEEEeecCCCeEEEEEeeCceEEEEecc-----CceeEEEE-------e-CCEEEEEEecC
Q 015220 188 ESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KNVQEIKI-------S-PGIMLLIFTKA 253 (411)
Q Consensus 188 ~~~~l~~PgfvEFDd~-NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-----~~VqeIkI-------S-dG~~Lai~q~t 253 (411)
....+..|.++.||.. ++.+.+.....+.+++.|+++.+...-++. +....|.+ + +|.+|.+.+..
T Consensus 134 ~~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 134 KCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SCBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred cccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 4566889999999984 677777777667888888888664433332 13566777 5 55433333222
Q ss_pred C--------------------------------------------Ccee--------eEEEEec-------CCcE-----
Q 015220 254 S--------------------------------------------GHVP--------LKILSIE-------DGTV----- 269 (411)
Q Consensus 254 ~--------------------------------------------~~ip--------iKIl~I~-------tG~~----- 269 (411)
. ..+| |..+++. ||+.
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 1 1111 2222222 2222
Q ss_pred ------EeEeeeccccCCcceeeeeecce--eEEe-ecCceeeEEEc--ccceE-----EEee------------ccccC
Q 015220 270 ------LKSFNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDV--RNFEL-----TEVS------------RTEFM 321 (411)
Q Consensus 270 ------L~t~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL--~t~e~-----~~v~------------~T~f~ 321 (411)
+..+ .-++.......|.+.+++ ++|. .++|.|+.+|. .++.. +--. ...|.
T Consensus 294 ~~~~g~~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 294 KNNPNTFKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp GGCTTTEEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred ccccccccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0110 011222233457777776 5666 48899999654 44432 1111 23677
Q ss_pred CCceEEEEe--------eceeEEEE-ecCeEEEEecCCceeeeecccc-----------ccCC--------CCccceEEE
Q 015220 322 TPSAFIFLY--------ENQLFLTF-RNRTVAVWNFRGELVTSFEDHL-----------LWHP--------DCNTNNIYI 373 (411)
Q Consensus 322 hpsAfifLy--------~sqlFlSf-sd~tI~iWn~~Gel~~s~e~H~-----------~~~~--------~c~~n~i~I 373 (411)
+|..-+++. ...||++= .+..|+.++.+| .++|+-|.- ++.+ .-.-.-|++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 899888885 34888887 778999999889 566776541 1111 123457999
Q ss_pred cCC-CCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 374 TSD-QDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 374 s~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+++ |.+.|+=+. |..|...++....|
T Consensus 452 d~~~g~lyVaD~~----------N~rIrki~~~~~~~ 478 (496)
T 3kya_A 452 DDVKEMFYVHDQV----------GHTIRTISMEQEEN 478 (496)
T ss_dssp ETTTTEEEEEETT----------TTEEEEEEECCCC-
T ss_pred ECCCCEEEEEeCC----------CCEEEEEECCCCcc
Confidence 997 888886433 34788777766544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=1.3 Score=46.05 Aligned_cols=55 Identities=9% Similarity=-0.099 Sum_probs=39.0
Q ss_pred cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++.+..||+. |+++=+..-... ...-.++..+++++.++.|. .+..+|..|||++
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~~~------~~~g~~~tagg~vf~gt~dg----------~l~A~D~~tG~~l 507 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTLDG----------YLKARDSDTGDLL 507 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECTTS----------EEEEEETTTCCEE
T ss_pred cCeEEEEECCCCCEEeEecCCCC------ccCcceEecCCEEEEECCCC----------eEEEEECCCCCEE
Confidence 4789999998 998776642111 11223445678888887775 9999999999986
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=1.1 Score=48.42 Aligned_cols=161 Identities=7% Similarity=0.045 Sum_probs=109.5
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCc----eEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Y----s~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
.+++|-=+.||..++++..+....+.+..+++... .....+. -.....+++. .|..|.+.+....+ |.+.+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~--I~v~~ 499 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT--VSVAD 499 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE--EEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCe--EEEEe
Confidence 47788889999999999999999999999999863 1122222 2366778887 44445566666555 45666
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeec--ceeEEeecC--ceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQEN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~--~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf 338 (411)
+. |+...++. ...-....-|++.+ +.|++...+ +.|...++....+..+-.+.+..|.++.+=+ ...||++=
T Consensus 500 ld-G~~~~~l~--~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 500 TK-GVKRKTLF--RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp TT-SSSEEEEE--ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CC-CCeEEEEE--eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 64 55544422 12234467788875 578887743 6899999987777666566677888866543 44788886
Q ss_pred -ecCeEEEEecCCceeeee
Q 015220 339 -RNRTVAVWNFRGELVTSF 356 (411)
Q Consensus 339 -sd~tI~iWn~~Gel~~s~ 356 (411)
..++|+..+++|.-.+.+
T Consensus 577 ~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 577 SKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp TTTTEEEEEETTSCSCEEE
T ss_pred CCCCcEEEEecCCCceEEE
Confidence 677999999998765554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=1 Score=41.66 Aligned_cols=198 Identities=9% Similarity=0.064 Sum_probs=121.3
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC----ceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~----Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
.+..|-=+.||..++++......++.+.++++.+ ...-..+.. .....+.+. .+--|.+.+...+++ .+++
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I--~~~~ 105 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV--SVAD 105 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE--EEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEE--EEEe
Confidence 4678889999999999999999999999999987 222222332 366788887 333344555555554 4667
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeec--ceeEEeecC--ceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQEN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~--~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf 338 (411)
+. |+...++.. ..-....-|++.+ ..+++...+ +.|...|+.-.....+-.+.+..|....+=+ ...+|++=
T Consensus 106 ~~-g~~~~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 106 TK-GVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp TT-SSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CC-CCceEEEEE--CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 65 544444221 1223456788864 567777654 6888888865444444344566777655543 44788877
Q ss_pred -ecCeEEEEecCCceeeeeccc--cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 339 -RNRTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 -sd~tI~iWn~~Gel~~s~e~H--~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
..++|...+++|.-.+.+-.. .+-+ -..+++.. +.+.++-.. +++|...|..||+
T Consensus 183 ~~~~~I~~~d~dg~~~~~~~~~~~~~~~----P~giav~~-~~ly~~d~~----------~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 183 SKLHSISSIDVNGGNRKTILEDEKRLAH----PFSLAVFE-DKVFWTDII----------NEAIFSANRLTGS 240 (316)
T ss_dssp TTTTEEEEEETTSCSCEEEEECTTTTSS----EEEEEEET-TEEEEEETT----------TTEEEEEETTTCC
T ss_pred CCCCeEEEEecCCCceEEEeecCCccCC----cEEEEEEC-CEEEEEECC----------CCeEEEEeCCCCc
Confidence 667999999998765555321 2222 34666642 444444322 3477777776665
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.44 Score=46.67 Aligned_cols=102 Identities=8% Similarity=-0.112 Sum_probs=77.2
Q ss_pred CeEEEeecCCC----eEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecC-------CCceeeEEEEecCCcEEe
Q 015220 205 GKVLTYSAQDS----IYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKA-------SGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 205 GkiLt~~~~ds----~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t-------~~~ipiKIl~I~tG~~L~ 271 (411)
.++.+....++ ++-|.|..+++.+-+|. +..= .+.+| ||..|.+.+.- ...-.|.+||+.|+++++
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 56777777666 78899999999998886 3333 79999 89888888743 224579999999999999
Q ss_pred EeeeccccC------Ccceeeeeecce--eEEeec--CceeeE--EEccc
Q 015220 272 SFNHLLHRN------KKVDFIEQFNEK--LLVKQE--NENLQI--LDVRN 309 (411)
Q Consensus 272 t~~~LL~h~------K~I~FLE~~~ek--llIKQe--~~~LkI--~dL~t 309 (411)
++. +|.. ...+-+.+++|+ +++..+ ++.+.+ +|+.+
T Consensus 111 ~I~--v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 111 DIE--LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEE--ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEE--CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 965 3311 345668888875 577775 467899 99988
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.1 Score=54.86 Aligned_cols=199 Identities=8% Similarity=0.041 Sum_probs=120.4
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC----ceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~----Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
.+..|--+.||..++++.......+.+.++++.+ ......+.. .....|.+. .+-.|.+.+...++ |.+++
T Consensus 404 ~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~--I~v~d 481 (699)
T 1n7d_A 404 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT--VSVAD 481 (699)
T ss_dssp CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSC--EEEEB
T ss_pred cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCe--EEEEe
Confidence 3678989999999999999998899999999986 222222221 244556665 33334444544444 46677
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeec--ceeEEeecC--ceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQEN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~--~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf 338 (411)
+.. +...++. -..-....-|++.+ ..|++...+ +.|..+++.......+..+.+..|.++.+=+ ...||++=
T Consensus 482 ~dg-~~~~~l~--~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 482 TKG-VKRKTLF--REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp SSS-CCEEEEC--CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred cCC-CceEEEE--eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEe
Confidence 654 4344321 11123456677764 566777643 6788888865544444345566787766543 35788877
Q ss_pred -ecCeEEEEecCCceeeeeccc--cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 339 -RNRTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 339 -sd~tI~iWn~~Gel~~s~e~H--~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
..++|.+.+++|.-.+.+-.. .+- .-..|++.++ .+.++-.. +++|...|..||+.
T Consensus 559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~----~P~glavd~~-~lywtd~~----------~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRKTILEDEKRLA----HPFSLAVFED-KVFWTDII----------NEAIFSANRLTGSD 617 (699)
T ss_dssp TTTTEEEEECSSSSCCEEECCCSSSCS----SCCCCEEETT-EEEEECST----------TTCEEEEETTTEEE
T ss_pred cCCCeEEEEccCCCceEEEEecCCcCC----CceEeEEECC-EEEEEeCC----------CCeEEEEEccCCCc
Confidence 677999999998655544321 121 2334555443 34444322 35888888888875
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.83 E-value=1.5 Score=42.53 Aligned_cols=196 Identities=9% Similarity=0.052 Sum_probs=122.2
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce----EEEEec--cCceeEEEEe--CCEEEEEEecCCCceeeEEE
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS--DKNVQEIKIS--PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys----~iysLs--~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl 262 (411)
.+..|--+.||..++++.......+.+..+++.+.. ....+. -.....+.+. .|. |.+.+....++ .+.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I--~~~ 186 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTV--SVA 186 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEE--EEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeE--EEE
Confidence 477899999999999999999999999999998621 222222 2366778887 444 45555555544 467
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeec--ceeEEeec--CceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEE
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLT 337 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlS 337 (411)
++..+. ..++. -..-....-|++.+ ..|++... .+.|...|+....+..+-.+.+..|.++.+=+ ...||++
T Consensus 187 ~~~g~~-~~~l~--~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 187 DTKGVK-RKTLF--RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp CTTTCS-EEEEE--ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred eCCCCc-eEEEE--eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE
Confidence 765443 33321 11223356688864 56777763 37899999877666655556667888765543 4478888
Q ss_pred E-ecCeEEEEecCCceeeeeccc--cccCCCCccceEEEcCCCCEE-EEEecCCCCCccccCCceEEEeeeccee
Q 015220 338 F-RNRTVAVWNFRGELVTSFEDH--LLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 338 f-sd~tI~iWn~~Gel~~s~e~H--~~~~~~c~~n~i~Is~Dqd~i-iS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
= .+++|+..+++|.-.+.+-.. .+-+| ..+++ +++.| ++-. ++++|...|..||+
T Consensus 264 D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P----~gl~v--~~~~lywtd~----------~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 264 DSKLHSISSIDVNGGNRKTILEDEKRLAHP----FSLAV--FEDKVFWTDI----------INEAIFSANRLTGS 322 (400)
T ss_dssp ETTTTEEEEEETTSCCCEEEEECSSTTSSE----EEEEE--ETTEEEEEES----------SSCSEEEEESSSCC
T ss_pred ECCCCEEEEEeCCCCccEEEEeCCCCCCCC----EEEEE--eCCEEEEecC----------CCCeEEEEEcCCCC
Confidence 6 678999999998765555321 22222 34555 44433 3322 23467777766664
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.80 E-value=1.6 Score=42.90 Aligned_cols=203 Identities=10% Similarity=0.069 Sum_probs=117.4
Q ss_pred ccCCCCeEEeeC--CCCeEEEeecCCCeEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEe-c
Q 015220 191 SLKWPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSI-E 265 (411)
Q Consensus 191 ~l~~PgfvEFDd--~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I-~ 265 (411)
.|.+|..+-+|. -+|.+.+.... +.++++|+++.+....+.. .....+.++ +|. |.+.+..+...+-.++.+ .
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 789999999998 47898887776 8899999988775544442 368899999 777 455554332222222222 2
Q ss_pred CCcEEeEeeeccccCCcceeeeeec--ceeEEee-cCceeeEEEcccceE-EEeeccccCCCceE-EEEeec--eeEEEE
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQ-ENENLQILDVRNFEL-TEVSRTEFMTPSAF-IFLYEN--QLFLTF 338 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQ-e~~~LkI~dL~t~e~-~~v~~T~f~hpsAf-ifLy~s--qlFlSf 338 (411)
++...... .+..-....-+.+.+ ..+++.. .++.|..+|..+++. ..+. +.-..+..+ +++.-. .+|++=
T Consensus 215 ~~~~~~~~--~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 215 ASGFTERL--SLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGTTCCEE--EEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-ECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCeeccc--cccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-ccCCCCCcccEEEeCCCCEEEEEe
Confidence 22221110 122234445577776 4566666 567899999998877 3321 111122221 333322 488887
Q ss_pred -ecCeEEEEecCC---cee--eeeccc---cccC-------CCCccceEEE---------cCCCCEEEEEecCCCCCccc
Q 015220 339 -RNRTVAVWNFRG---ELV--TSFEDH---LLWH-------PDCNTNNIYI---------TSDQDLIISYCKADSDDPLA 393 (411)
Q Consensus 339 -sd~tI~iWn~~G---el~--~s~e~H---~~~~-------~~c~~n~i~I---------s~Dqd~iiS~~~d~~~~~~~ 393 (411)
.++.|..+++++ .+. .++.+. .+|. ..-.-+-+++ .++|++.|+=+.
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~-------- 363 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD-------- 363 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT--------
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC--------
Confidence 678999988773 221 244333 1111 1112345788 788888776332
Q ss_pred cCCceEEEeeecceee
Q 015220 394 EGNGKLFVSLLMFVTC 409 (411)
Q Consensus 394 ~~~gtI~i~~i~tGk~ 409 (411)
++.|..+|. +|++
T Consensus 364 --n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 364 --SHTVRVLTP-EGRV 376 (433)
T ss_dssp --TTEEEEECT-TSEE
T ss_pred --CCEEEEECC-CCCE
Confidence 346666663 5543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.80 E-value=1.3 Score=41.84 Aligned_cols=163 Identities=14% Similarity=0.142 Sum_probs=111.5
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEec
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
..+..|.-+-+|..+|++.......+.+.++++..-.....+.. ..-..|++. +|.|..+....++++ ..+++
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I--~r~~~- 189 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI--EASSM- 189 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE--EEEET-
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE--EEEeC-
Confidence 34678999999999999999999999999999987543333332 367888998 466555544332332 23333
Q ss_pred CCcEEeEeeeccccCCcceeeeee--cceeEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecC
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNR 341 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~ 341 (411)
+|+....+.. ..-...+-|.+. .+.|++.. ..+.|..+|+..+.+..+......+|.++.+ +...+|.+- .++
T Consensus 190 dG~~~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~ 266 (349)
T 3v64_C 190 DGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK 266 (349)
T ss_dssp TSCSCEESCC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred CCCCcEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCC
Confidence 5654444210 112234668886 56676665 6678999998776666555555779998877 778999998 788
Q ss_pred eEEEEe-cCCceeeeecc
Q 015220 342 TVAVWN-FRGELVTSFED 358 (411)
Q Consensus 342 tI~iWn-~~Gel~~s~e~ 358 (411)
.|...| +.|+.++.+..
T Consensus 267 ~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 267 SINSANKFTGKNQEIIRN 284 (349)
T ss_dssp EEEEEETTTCCSCEEEEC
T ss_pred eEEEEEccCCCccEEecc
Confidence 999998 66887666653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.75 E-value=1.1 Score=43.06 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=111.4
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEec
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
..+..|.-+-+|..+|++.......+.+.+.++........+.+ ..-..|++. +|.|.......++++ ..+++
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I--~r~~~- 232 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI--EASSM- 232 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEE--EEEET-
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEE--EEEeC-
Confidence 34678999999999999999999999999999976543333333 367888888 566555443332333 33333
Q ss_pred CCcEEeEeeeccccCCcceeeeee--cceeEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecC
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNR 341 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~ 341 (411)
+|+....+.. ..-.-.+-|.+. .+.|++.. ..+.|..+|+..+.+..+......+|.++.+ +...+|.+= .++
T Consensus 233 dG~~~~~~~~--~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~ 309 (386)
T 3v65_B 233 DGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTK 309 (386)
T ss_dssp TSCSCEEEEC--SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTT
T ss_pred CCCCcEEEEE--CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCC
Confidence 4554444211 111234567876 56676664 6778999998766666555556779998877 778999998 778
Q ss_pred eEEEEe-cCCceeeeeccc
Q 015220 342 TVAVWN-FRGELVTSFEDH 359 (411)
Q Consensus 342 tI~iWn-~~Gel~~s~e~H 359 (411)
.|...| +.|+.++.+...
T Consensus 310 ~V~~~~~~~G~~~~~i~~~ 328 (386)
T 3v65_B 310 SINSANKFTGKNQEIIRNK 328 (386)
T ss_dssp EEEEEETTTCCSCEEEECS
T ss_pred eEEEEECCCCcceEEEccC
Confidence 999999 668877776543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.47 Score=48.47 Aligned_cols=205 Identities=9% Similarity=-0.032 Sum_probs=115.4
Q ss_pred CCCeEEEeecC-CCeEEEEEeeCce--EEEEeccC--ceeEEEEeCCEEEEEEecCC---CceeeEEEEecCCcEEeEe-
Q 015220 203 VNGKVLTYSAQ-DSIYKVFDLKNYT--MLYSISDK--NVQEIKISPGIMLLIFTKAS---GHVPLKILSIEDGTVLKSF- 273 (411)
Q Consensus 203 ~NGkiLt~~~~-ds~ykVWdL~~Ys--~iysLs~~--~VqeIkISdG~~Lai~q~t~---~~ipiKIl~I~tG~~L~t~- 273 (411)
.||++++.++. ++...+||..+.+ .+-.+... .-..+.+.||.++++.-... ....+.+||..+++-..--
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~ 331 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN 331 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCC
Confidence 68999999984 5688999988755 33333322 22334445898888875322 2345788999988743210
Q ss_pred ---eecc-c-------cCCcceeeeeecceeEEeecCceeeEEEcccceEEEeecccc---------CCCceEEE-Eeec
Q 015220 274 ---NHLL-H-------RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF---------MTPSAFIF-LYEN 332 (411)
Q Consensus 274 ---~~LL-~-------h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f---------~hpsAfif-Ly~s 332 (411)
.-+. . ....+..+--.+++.+.......+..||..+.+........- .+-.|+.+ ....
T Consensus 332 ~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~ 411 (656)
T 1k3i_A 332 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG 411 (656)
T ss_dssp SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred ccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCC
Confidence 0000 1 222333333333444444456789999999987665221111 01122222 2345
Q ss_pred eeEEEE-ecC-----------eEEEEecCCceeeeec-cccccCCCCccceEEEcCCCCEEEEEecCCCCC-ccccCCce
Q 015220 333 QLFLTF-RNR-----------TVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKADSDD-PLAEGNGK 398 (411)
Q Consensus 333 qlFlSf-sd~-----------tI~iWn~~Gel~~s~e-~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~-~~~~~~gt 398 (411)
++|+.+ .+. +|++||+.-.--+... +.+. .+-+ --...+.+||+++|.|..+.... .......+
T Consensus 412 ~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp-~~R~-~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~ 489 (656)
T 1k3i_A 412 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY-FART-FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT 489 (656)
T ss_dssp EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS-SCCB-SCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC-CCcc-cCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence 888887 332 7889998844333332 2222 1111 12345678999999998764210 01123478
Q ss_pred EEEeeecceee
Q 015220 399 LFVSLLMFVTC 409 (411)
Q Consensus 399 I~i~~i~tGk~ 409 (411)
+.+||..|++.
T Consensus 490 v~~ydp~t~~W 500 (656)
T 1k3i_A 490 PEIYVPEQDTF 500 (656)
T ss_dssp CEEEEGGGTEE
T ss_pred eEEEcCCCCce
Confidence 99999998764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.65 E-value=1.3 Score=43.01 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=112.3
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEe--CCEEEEEEecCCCceeeEEEEec
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
..+..|.=+-+|..+|++.......+.+.|.++..-.....+. -.....|++. +|.|..+....+++ |...++
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~--I~~~~~- 232 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK--IKKGGL- 232 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC--EEEEET-
T ss_pred CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE--EEEEeC-
Confidence 3567899999999999999999999999999998755333333 2367889997 46655555444443 334444
Q ss_pred CCcEEeEeeeccccCCcceeeeee--cceeEEee-cCceeeEEEcccceEEEeec--cccCCCceEEEEeeceeEEEE-e
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQ-ENENLQILDVRNFELTEVSR--TEFMTPSAFIFLYENQLFLTF-R 339 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQ-e~~~LkI~dL~t~e~~~v~~--T~f~hpsAfifLy~sqlFlSf-s 339 (411)
+|+....+.. ..-.-..-|.+. .+.|++.. +.+.|...|+..+.+..+.. ..+.||.++.. ....+|.+= .
T Consensus 233 dG~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~ 309 (400)
T 3p5b_L 233 NGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDII 309 (400)
T ss_dssp TSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESS
T ss_pred CCCccEEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCC
Confidence 4554444211 111345567777 45676664 67899999997666655433 35678988754 777899988 7
Q ss_pred cCeEEEEe-cCCceeeeeccc
Q 015220 340 NRTVAVWN-FRGELVTSFEDH 359 (411)
Q Consensus 340 d~tI~iWn-~~Gel~~s~e~H 359 (411)
++.|..+| +.|+.++.+...
T Consensus 310 ~~~V~~~~~~~G~~~~~i~~~ 330 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVNLLAEN 330 (400)
T ss_dssp SCSEEEEESSSCCCCEEEECS
T ss_pred CCeEEEEEcCCCCceEEEecC
Confidence 77899999 559877766543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.38 E-value=1.1 Score=45.67 Aligned_cols=209 Identities=11% Similarity=0.100 Sum_probs=115.0
Q ss_pred CCeEEeeCCCCeEEEeecCCC-----------eEEEEEeeCce--EEEEec---cCceeEEEEe-CCEEEEEEecCCCce
Q 015220 195 PGFVEFDDVNGKVLTYSAQDS-----------IYKVFDLKNYT--MLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHV 257 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds-----------~ykVWdL~~Ys--~iysLs---~~~VqeIkIS-dG~~Lai~q~t~~~i 257 (411)
|-..-+-..+|++++.++.+. ...+||..+.+ .+-.+. +..-..+.+. ||.++++.-...+
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-- 265 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-- 265 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT--
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC--
Confidence 334444444899999976432 57788888755 444442 2233345554 8888888765444
Q ss_pred eeEEEEecCCcEEeEeeeccccCCcceeeeee-cceeEEeecC-------ceeeEEEcccceEEEeeccc---cCCC-ce
Q 015220 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQEN-------ENLQILDVRNFELTEVSRTE---FMTP-SA 325 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~-~ekllIKQe~-------~~LkI~dL~t~e~~~v~~T~---f~hp-sA 325 (411)
-+.+||..+++-..-. -++...--...... ++++++--+. ..+.+||..+++-..++... ...+ ..
T Consensus 266 ~v~~yd~~t~~W~~~~--~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~ 343 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGP--DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 343 (656)
T ss_dssp CEEEEEGGGTEEEECC--CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred ceEEecCcCCceeECC--CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc
Confidence 5889999988654321 22222222345566 6777776552 57999999999877763211 0000 00
Q ss_pred EEEEeeceeEEE----------EecCeEEEEecCCc-eeeeecccccc-----CCCCccceEEE-cCCCCEEEEEecCCC
Q 015220 326 FIFLYENQLFLT----------FRNRTVAVWNFRGE-LVTSFEDHLLW-----HPDCNTNNIYI-TSDQDLIISYCKADS 388 (411)
Q Consensus 326 fifLy~sqlFlS----------fsd~tI~iWn~~Ge-l~~s~e~H~~~-----~~~c~~n~i~I-s~Dqd~iiS~~~d~~ 388 (411)
..+...+.+|+. +..++++.||+..+ -......+... .+.|- ..+.. .-++++++.|..+..
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~-~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG-NAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC-EEEEEETTTTEEEEECCBSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC-ceEeccCCCCeEEEEeCCCCC
Confidence 111122233333 34567889999843 23333222110 11121 12222 458999999987643
Q ss_pred CCccccCC-ceEEEeeeccee
Q 015220 389 DDPLAEGN-GKLFVSLLMFVT 408 (411)
Q Consensus 389 ~~~~~~~~-gtI~i~~i~tGk 408 (411)
++.....+ .+|.+||..|++
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~ 443 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSP 443 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCC
T ss_pred CCCCcCCcceEEEcCCCCCCC
Confidence 33322332 478888887764
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=1.7 Score=44.62 Aligned_cols=191 Identities=10% Similarity=0.027 Sum_probs=110.6
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC---ce--------eEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NV--------QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~---~V--------qeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
+|++.+....++ +.-+|.+|.+.+-+.... .. ..+.+.++.+++... .-.|.-+|..||+++.+
T Consensus 68 ~g~vyv~~~~~~-v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSR-LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----DASVVALNKNTGKVVWK 142 (582)
T ss_dssp TTEEEEEETTTE-EEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET----TTEEEEEESSSCCEEEE
T ss_pred CCEEEEEcCCCC-EEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC----CCEEEEEECCCCCEEee
Confidence 566666555444 666777777777444322 10 223456776544321 12477799999999998
Q ss_pred eeeccccCC--cce-eeeeecc------eeEEeec------CceeeEEEcccceEEEeecccc-----------------
Q 015220 273 FNHLLHRNK--KVD-FIEQFNE------KLLVKQE------NENLQILDVRNFELTEVSRTEF----------------- 320 (411)
Q Consensus 273 ~~~LL~h~K--~I~-FLE~~~e------kllIKQe------~~~LkI~dL~t~e~~~v~~T~f----------------- 320 (411)
+..- .+.. .+. .-.+..+ .+++-.. +..|..+|..||+..=..++.-
T Consensus 143 ~~~~-~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~ 221 (582)
T 1flg_A 143 KKFA-DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDV 221 (582)
T ss_dssp EECS-CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCT
T ss_pred ecCC-CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccc
Confidence 6531 1111 111 1123445 5556543 5789999999998764222210
Q ss_pred C----------------------CCceE-EEEe-e-ceeEEEEe--------------------c----CeEEEEecC-C
Q 015220 321 M----------------------TPSAF-IFLY-E-NQLFLTFR--------------------N----RTVAVWNFR-G 350 (411)
Q Consensus 321 ~----------------------hpsAf-ifLy-~-sqlFlSfs--------------------d----~tI~iWn~~-G 350 (411)
+ ...+- ..+. . ..+|+.-. | ++|..+|.+ |
T Consensus 222 g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG 301 (582)
T 1flg_A 222 KAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG 301 (582)
T ss_dssp TCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC
T ss_pred ccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC
Confidence 0 00000 1111 1 24455442 2 589999998 9
Q ss_pred ceeeee--ccccccCCCCccceEEEc---CCC---CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSF--EDHLLWHPDCNTNNIYIT---SDQ---DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~--e~H~~~~~~c~~n~i~Is---~Dq---d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++=++ ..|-.|.-+....-+... .|| ++++.++++- .+.++|..|||.+
T Consensus 302 ~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G----------~l~~lD~~tG~~l 359 (582)
T 1flg_A 302 EVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNG----------FFYVVDRSNGKLQ 359 (582)
T ss_dssp CEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTS----------EEEEEETTTCCEE
T ss_pred CEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCc----------eEEEEECCCCCEe
Confidence 988765 456666544433445554 578 4788887764 9999999999975
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=4.2 Score=43.92 Aligned_cols=164 Identities=14% Similarity=0.127 Sum_probs=112.9
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEe--CCEEEEEEecCCCceeeEEEEec
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
..+..|.=+-+|..++++.......+.+.|.++........+. -.....|.|. .|.|..+....+++ |.+.++
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~--I~~~~~- 544 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK--IKKGGL- 544 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE--EEEEET-
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCe--EEEEec-
Confidence 3578899999999999999999999999999998754333333 2367889997 46665555444343 445555
Q ss_pred CCcEEeEeeeccccCCcceeeeee--cceeEEee-cCceeeEEEcccceEEEeecc--ccCCCceEEEEeeceeEEEE-e
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQ-ENENLQILDVRNFELTEVSRT--EFMTPSAFIFLYENQLFLTF-R 339 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T--~f~hpsAfifLy~sqlFlSf-s 339 (411)
+|+....+.. ..-....-|.+. .+.|++.. +.+.|...|+.-+.+..+..+ .+.||.++- ++...||.|= .
T Consensus 545 dG~~~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~gla-v~~~~lYwtD~~ 621 (791)
T 3m0c_C 545 NGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-VFEDKVFWTDII 621 (791)
T ss_dssp TSCCEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEE-EETTEEEEEETT
T ss_pred CCCceEEEEe--CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEE-EeCCEEEEEECC
Confidence 5665555321 111345567766 56777764 678899999977666665433 567888765 4777899988 6
Q ss_pred cCeEEEEec-CCceeeeeccc
Q 015220 340 NRTVAVWNF-RGELVTSFEDH 359 (411)
Q Consensus 340 d~tI~iWn~-~Gel~~s~e~H 359 (411)
+++|..-|. .|..++.+...
T Consensus 622 ~~~I~~~dk~tG~~~~~l~~~ 642 (791)
T 3m0c_C 622 NEAIFSANRLTGSDVNLLAEN 642 (791)
T ss_dssp TTEEEEEETTTCCCCEEEECS
T ss_pred CCEEEEEeCCCCcceEEeecC
Confidence 778888874 48766666443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.22 E-value=2.1 Score=40.33 Aligned_cols=197 Identities=11% Similarity=0.079 Sum_probs=123.0
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEecC
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
+..|-=+.||..+|++.......+.+..+++.+.... ..+.. .....+.+. +|. |.+.+...+++ .++++.
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I--~~~~~d- 109 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK-LYWTDSETNRI--EVSNLD- 109 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTE-EEEEETTTTEE--EEEETT-
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCe-EEEEECCCCEE--EEEECC-
Confidence 5567789999999999999999999999999876321 11111 245567776 444 44455555544 466664
Q ss_pred CcEEeEeeeccccCCcceeeeeec--ceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-ec
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-RN 340 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-sd 340 (411)
|+....+. -.......-|++.+ ..+++.. +++.|...|+.-.....+-.+.+..|..+.+=+ ...+|++= ..
T Consensus 110 G~~~~~l~--~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 110 GSLRKVLF--WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp SCSCEEEE--CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCcEEEEE--eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCC
Confidence 44333321 12334456688874 5677776 367899999875555444445566787666554 45788887 67
Q ss_pred CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 341 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 341 ~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.|..++++|.-.+.+-...+.+| ..+++.+| .+.++ | -++++|...|..||+.
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~~P----~glav~~~-~lywt---d-------~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLPHP----FALTLFED-ILYWT---D-------WSTHSILACNKYTGEG 241 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCSCE----EEEEEETT-EEEEE---E-------TTTTEEEEEETTTCCS
T ss_pred CEEEEEcCCCCceEEEecCCCCCc----eEEEEeCC-EEEEE---e-------cCCCeEEEEECCCCCc
Confidence 899999999875555543223333 45666422 33333 2 1345787777777763
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=3 Score=42.52 Aligned_cols=79 Identities=6% Similarity=-0.005 Sum_probs=52.0
Q ss_pred eeeEEEEecCCcEEeEeeeccccCCccee--eeeecceeEEeecCceeeEEEcccceEEE---eeccccCCCceEEEEee
Q 015220 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDF--IEQFNEKLLVKQENENLQILDVRNFELTE---VSRTEFMTPSAFIFLYE 331 (411)
Q Consensus 257 ipiKIl~I~tG~~L~t~~~LL~h~K~I~F--LE~~~ekllIKQe~~~LkI~dL~t~e~~~---v~~T~f~hpsAfifLy~ 331 (411)
-.|..||+.||++++++..- .++.- +...++.+++.+.+..|.+||..+|+..- +.......| +++...
T Consensus 444 g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p--~~~~~~ 517 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP--MTYSFK 517 (571)
T ss_dssp EEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEET
T ss_pred CeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeee--EEEEEC
Confidence 46889999999999986532 22222 23346778888899999999999999764 332233333 333344
Q ss_pred ceeEEEEecC
Q 015220 332 NQLFLTFRNR 341 (411)
Q Consensus 332 sqlFlSfsd~ 341 (411)
.++|+...++
T Consensus 518 G~~yv~~~~G 527 (571)
T 2ad6_A 518 GKQYIGSMYG 527 (571)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEECC
Confidence 4667766554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=2.2 Score=38.68 Aligned_cols=195 Identities=9% Similarity=-0.039 Sum_probs=112.9
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEecc----CceeEEEEe--CCEEEEEEecCC---------
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD----KNVQEIKIS--PGIMLLIFTKAS--------- 254 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~----~~VqeIkIS--dG~~Lai~q~t~--------- 254 (411)
...|--+-+|..+|++++.....+ +.++|..+.+ .+....+ .....+.+. +|.+.+.....+
T Consensus 79 ~~~p~gi~~~~~~g~l~v~d~~~~-i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 79 CGRTYDISYNLQNNQLYIVDCYYH-LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp HCCEEEEEEETTTTEEEEEETTTE-EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred CCCCceEEEcCCCCcEEEEECCCC-EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 345777888877889888766544 6667776543 2221111 246778887 476554432211
Q ss_pred -----CceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eEEe-ecCceeeEEEccc---ceEEEeeccccCCC
Q 015220 255 -----GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVRN---FELTEVSRTEFMTP 323 (411)
Q Consensus 255 -----~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~t---~e~~~v~~T~f~hp 323 (411)
..--|-.++..+|+...-.. .-.-.+-|++.+++ +++. ..++.|..||+.. ++...+. ..-+ |
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-P 231 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-P 231 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-E
T ss_pred hcccCCCceEEEEeCCCCEEEEecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-C
Confidence 12346667777777543211 11234457888763 6777 4568999999875 2322222 2223 6
Q ss_pred ceEEEEeeceeEEEEe-----------cCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcc
Q 015220 324 SAFIFLYENQLFLTFR-----------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (411)
Q Consensus 324 sAfifLy~sqlFlSfs-----------d~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~ 392 (411)
..+..=..-.+|++-. .+.|..+|.+|++++.+....+... -....+.. .+|.+.|+.....
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~-~~~~~~~~-~~g~L~v~~~~~~----- 304 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG-EHFEQIQE-HDGLLYIGTLFHG----- 304 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT-SCCCEEEE-ETTEEEEECSSCS-----
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCcc-ccceEEEE-eCCEEEEeecCCC-----
Confidence 6543322337888873 4678899999999998876543211 12333433 5677777655544
Q ss_pred ccCCceEEEeeec
Q 015220 393 AEGNGKLFVSLLM 405 (411)
Q Consensus 393 ~~~~gtI~i~~i~ 405 (411)
.|-.+++.
T Consensus 305 -----~i~~~~~~ 312 (322)
T 2fp8_A 305 -----SVGILVYD 312 (322)
T ss_dssp -----EEEEEEC-
T ss_pred -----ceEEEecc
Confidence 66666653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=3.5 Score=42.93 Aligned_cols=197 Identities=9% Similarity=0.054 Sum_probs=122.1
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--------CceeEEEEe-CCEEEEEEecCCCceeeEEE
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KNVQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--------~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl 262 (411)
++.|--++||..++++..+....+.+..+++........+.. .....+++- .|--|.+.+...++ |-+.
T Consensus 339 ~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~--I~v~ 416 (628)
T 4a0p_A 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNV--INVT 416 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTE--EEEE
T ss_pred cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCE--EEEE
Confidence 455667999999999999999999999998876432222222 257778887 33334444444444 4555
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeec--ceeEEeecC-c--eeeEEEcccceEEEeeccccCCCceEEEEee-ceeEE
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQEN-E--NLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFL 336 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~-~--~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~-sqlFl 336 (411)
++ +|+..+.+. ........-|++.+ ++|++.--+ + +|.-.++.-..+..+-.+....|.....=+. ..||.
T Consensus 417 ~~-~G~~~~~l~--~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw 493 (628)
T 4a0p_A 417 RL-DGRSVGVVL--KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFW 493 (628)
T ss_dssp ET-TSCEEEEEE--ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred EC-CCCeEEEEE--eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEE
Confidence 65 688766532 12334567788886 566666433 3 5777777655555544455667866555443 47888
Q ss_pred EE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 337 TF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 337 Sf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+= ..+.|+.-+++|.-.+.+-...+-|| ..|++.+ +.+.++=. .+.+|...|..||+
T Consensus 494 ~D~~~~~I~~~~~dG~~r~~~~~~~~~~P----~glav~~-~~ly~tD~----------~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 494 ADSDLRRIESSDLSGANRIVLEDSNILQP----VGLTVFE-NWLYWIDK----------QQQMIEKIDMTGRE 551 (628)
T ss_dssp EETTTTEEEEEETTSCSCEEEECSSCSCE----EEEEEET-TEEEEEET----------TTTEEEEEETTSSS
T ss_pred EeCCCCEEEEEeCCCCceEEEEcCCCCCc----EEEEEEC-CEEEEEEC----------CCCeEEEEECcCCC
Confidence 76 67899999999887666654333333 3555544 33333322 22366666666664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.78 E-value=2.8 Score=43.86 Aligned_cols=194 Identities=12% Similarity=0.093 Sum_probs=103.4
Q ss_pred EEeeCCCCeEEEeecCC-----CeEEEEEeeCc----eEEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 198 VEFDDVNGKVLTYSAQD-----SIYKVFDLKNY----TMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~d-----s~ykVWdL~~Y----s~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
+.|. ++|+-|.|...+ ..+.++++.+- .++|.-+++ ....+.+| ||..|++....+...-|.++++.+
T Consensus 226 ~~Ws-pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 226 IVWG-PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CEEC-SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred EEEe-cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 4453 567777776654 23445566553 256665554 45678899 998888888777788899999998
Q ss_pred Cc-EE--eEeeeccccCCcc-eeee-eecceeEEeecC-----ceeeEEEccc-ceEE--EeeccccCCCceEEEEeece
Q 015220 267 GT-VL--KSFNHLLHRNKKV-DFIE-QFNEKLLVKQEN-----ENLQILDVRN-FELT--EVSRTEFMTPSAFIFLYENQ 333 (411)
Q Consensus 267 G~-~L--~t~~~LL~h~K~I-~FLE-~~~ekllIKQe~-----~~LkI~dL~t-~e~~--~v~~T~f~hpsAfifLy~sq 333 (411)
|+ .. .. +..+.... ...+ -.++.+++.... .+|-.+|+.+ ++.. .++......-..+ .+....
T Consensus 305 ~~~~~~~~~---l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~-~~~~~~ 380 (751)
T 2xe4_A 305 GNAHNTLEI---VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESI-AVRSNY 380 (751)
T ss_dssp CTTCCCEEE---SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEE-EECSSE
T ss_pred CCCCceeEE---eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEE-EEECCE
Confidence 73 12 32 44443333 3344 336666666532 3566677765 2322 1221110001112 222446
Q ss_pred eEEEE-ecCeEEE--Eec-------C-CceeeeeccccccCCCCccceEEE------cCCC-CEEEEEecCCCCCccccC
Q 015220 334 LFLTF-RNRTVAV--WNF-------R-GELVTSFEDHLLWHPDCNTNNIYI------TSDQ-DLIISYCKADSDDPLAEG 395 (411)
Q Consensus 334 lFlSf-sd~tI~i--Wn~-------~-Gel~~s~e~H~~~~~~c~~n~i~I------s~Dq-d~iiS~~~d~~~~~~~~~ 395 (411)
++++. .++..++ +++ . |++++.+. + |. ....+.+ ++|+ .++++++... .
T Consensus 381 lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~---l--~~-~~~~~~~~~~~~~~~~~~~l~~~~ss~~-------~ 447 (751)
T 2xe4_A 381 LVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVV---M--EE-PIFTVHLVESQMLEYEEPTFRMEYSSLA-------T 447 (751)
T ss_dssp EEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECC---C--CC-SSCEEEECGGGCCCTTCSCEEEEEEETT-------E
T ss_pred EEEEEEeCCEEEEEEEecccccccccCCccceEEC---C--CC-ceeEEEeccCcccCCCCCEEEEEEeCCC-------C
Confidence 77776 6675554 454 3 33133331 0 00 1113345 3455 4777777653 1
Q ss_pred CceEEEeeecceee
Q 015220 396 NGKLFVSLLMFVTC 409 (411)
Q Consensus 396 ~gtI~i~~i~tGk~ 409 (411)
-++|-..|+.+|+.
T Consensus 448 P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 448 PNTWFDVSPQDHSR 461 (751)
T ss_dssp EEEEEEECTTTCCE
T ss_pred CCEEEEEECCCCcE
Confidence 14666667766653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=94.77 E-value=3.7 Score=40.92 Aligned_cols=184 Identities=16% Similarity=0.233 Sum_probs=110.4
Q ss_pred eCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCE--------EEEEEecC--CCceeeEEEEe--cCCc
Q 015220 201 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGI--------MLLIFTKA--SGHVPLKILSI--EDGT 268 (411)
Q Consensus 201 Dd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~--------~Lai~q~t--~~~ipiKIl~I--~tG~ 268 (411)
|...+.+|..... +-+-|+|| +.+.|..|+.-.+.-|-+-+|. +++..++. +++ |.|++| .+++
T Consensus 37 dp~~s~ii~t~k~-~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~--l~vf~iDp~~~~ 112 (355)
T 3amr_A 37 TPQNSKLITTNKK-SGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT--IEIYAIDGKNGT 112 (355)
T ss_dssp CGGGCEEEEEETT-TEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCE--EEEEEECTTTCC
T ss_pred CCCccEEEEEcCC-CCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCe--EEEEEECCCCCc
Confidence 4555676666554 67999999 9999999997777777777666 56667776 555 778877 5665
Q ss_pred EEeEeeec---cccC-Ccceeeee--ec--c--eeEEeecCceeeEEEcc-------cceEEEeeccccCCCceEEEEe-
Q 015220 269 VLKSFNHL---LHRN-KKVDFIEQ--FN--E--KLLVKQENENLQILDVR-------NFELTEVSRTEFMTPSAFIFLY- 330 (411)
Q Consensus 269 ~L~t~~~L---L~h~-K~I~FLE~--~~--e--kllIKQe~~~LkI~dL~-------t~e~~~v~~T~f~hpsAfifLy- 330 (411)
+..+... ++.. ++++=|.. .+ . +.++-.++..+..|+|. ++++.+ +.-.-++.--|++
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR---~f~lgsq~EgcvvD 188 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR---AFKMNSQTEGMAAD 188 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE---EEECSSCEEEEEEE
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE---EecCCCCcceEEEc
Confidence 5553221 2222 66665555 33 2 47888888999999993 334433 3322223333333
Q ss_pred -ec-eeEEEEecCeEEEEecCCc--------eeeeec-cccccCCCCccceEEE--cCCCC-EEEEEe-cCCCCCccccC
Q 015220 331 -EN-QLFLTFRNRTVAVWNFRGE--------LVTSFE-DHLLWHPDCNTNNIYI--TSDQD-LIISYC-KADSDDPLAEG 395 (411)
Q Consensus 331 -~s-qlFlSfsd~tI~iWn~~Ge--------l~~s~e-~H~~~~~~c~~n~i~I--s~Dqd-~iiS~~-~d~~~~~~~~~ 395 (411)
.+ +||+.=.+.- ||-+..+ ++..+- +|+- .+ .--++| .+||+ .|+..| -+.
T Consensus 189 d~~g~Lyv~eEd~G--Iw~~da~p~~~~~~~~v~~~~~g~l~--aD--vEGLai~~~~~g~gyLivSsQG~~-------- 254 (355)
T 3amr_A 189 DEYGRLYIAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLT--RD--IEGLTIYYAADGKGYLMASSQGNS-------- 254 (355)
T ss_dssp TTTTEEEEEETTTE--EEEEECSTTSCSCCEEEEEBSSSSBC--SC--EEEEEEEECGGGCEEEEEEEGGGT--------
T ss_pred CCCCeEEEecccce--EEEEeCCcCCCCCceEEEEecCCccc--cC--cceEEEEecCCCCEEEEEEcCCCC--------
Confidence 23 7777777755 5666533 333331 1111 11 233444 88887 555555 333
Q ss_pred CceEEEeeec-cee
Q 015220 396 NGKLFVSLLM-FVT 408 (411)
Q Consensus 396 ~gtI~i~~i~-tGk 408 (411)
+..++|.. +.+
T Consensus 255 --s~~Vydr~~~~~ 266 (355)
T 3amr_A 255 --SYAIYDRQGKNK 266 (355)
T ss_dssp --EEEEEESSTTCC
T ss_pred --EEEEEECCCCCc
Confidence 78888875 443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=94.74 E-value=1.7 Score=46.20 Aligned_cols=191 Identities=12% Similarity=0.112 Sum_probs=123.7
Q ss_pred CCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCc-----------------------------------
Q 015220 214 DSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGH----------------------------------- 256 (411)
Q Consensus 214 ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~----------------------------------- 256 (411)
++++.|.|..+.+.+.+|. +.+-.-+.+| ||-.+.+.....+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 6789999999999998887 2356667788 77777766654422
Q ss_pred eeeEEEEecC--CcE-EeEeeeccccCCcceeeeeeccee--EEee-cCceeeEEEcccce------------E-EEeec
Q 015220 257 VPLKILSIED--GTV-LKSFNHLLHRNKKVDFIEQFNEKL--LVKQ-ENENLQILDVRNFE------------L-TEVSR 317 (411)
Q Consensus 257 ipiKIl~I~t--G~~-L~t~~~LL~h~K~I~FLE~~~ekl--lIKQ-e~~~LkI~dL~t~e------------~-~~v~~ 317 (411)
--++|+|..+ |+. +.+ ++--+...-+..++|+- ++.. .+..+-++|+.+.+ . .++
T Consensus 254 ~~V~VID~~~~~~~~~~~~----Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-- 327 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRY----IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-- 327 (595)
T ss_dssp TTEEEEECSGGGCCSSEEE----EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--
T ss_pred CcEEEEeCcccCCceeEEE----EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--
Confidence 1378888888 665 444 23346677899998875 4444 67889999999864 1 222
Q ss_pred cccCCCceEEEEeeceeEEEE-ecCeEEEEecCC-----------ceeeeeccccccCCCCccceEEEcCCCCEEEEEec
Q 015220 318 TEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (411)
Q Consensus 318 T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~G-----------el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~ 385 (411)
..---|.-+.|=.-..+|++. -|++|.+||.+. ..+.++.-|..=-.+|..--+.++|||+.|+|.++
T Consensus 328 ~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 222245544444333677777 899999999874 25567776643100334444567999999999998
Q ss_pred CCCCCcc---ccCCceEEEeeecceeee
Q 015220 386 ADSDDPL---AEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 386 d~~~~~~---~~~~gtI~i~~i~tGk~~ 410 (411)
-..+.-. ++---+=-+.||.+||+.
T Consensus 408 ~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 408 FSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred CCccccccCCCCCCCcceEEEcCCCcEE
Confidence 7533210 111112267888777753
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.40 E-value=3.4 Score=38.78 Aligned_cols=186 Identities=11% Similarity=0.136 Sum_probs=112.6
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc---CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT 268 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~---~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~ 268 (411)
.-+.=+-||..+++..+-.-.+..+-..|++ .+.+..+.- .+...|++. +|.|++..... .++. ++++.+..
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~-~~l~--~~~v~~~~ 102 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERD-YAIY--VISLTPNS 102 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTT-TEEE--EEEECTTC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCC-CcEE--EEEcCCCC
Confidence 3455677776666666655556666667776 777777642 377788887 88866655554 4433 67765443
Q ss_pred ---EEeEeee---ccccCCcceeeeeecc--eeEEeecCceeeEEEcc---cc-eEEEee-----ccc-cCCCceEEEEe
Q 015220 269 ---VLKSFNH---LLHRNKKVDFIEQFNE--KLLVKQENENLQILDVR---NF-ELTEVS-----RTE-FMTPSAFIFLY 330 (411)
Q Consensus 269 ---~L~t~~~---LL~h~K~I~FLE~~~e--kllIKQe~~~LkI~dL~---t~-e~~~v~-----~T~-f~hpsAfifLy 330 (411)
.+....+ ..+.++..+-|+..+. .+++.+|..+..||.+. ++ ....+. .+. -..+++..+=.
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 2333322 2357888899999876 58999998888888875 11 111111 111 22567777666
Q ss_pred eceeEEEE--ecCeEEEEecCCceeee--ecc--ccccCCCCccceEEEcCCCCEEEE
Q 015220 331 ENQLFLTF--RNRTVAVWNFRGELVTS--FED--HLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 331 ~sqlFlSf--sd~tI~iWn~~Gel~~s--~e~--H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
.+.-++.. .++.+-+.|++|.++.. |.+ |-+...-.--.-|++.+||.+-|+
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv 240 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV 240 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence 66444444 77899999999997663 332 111111123345666666666555
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=3.4 Score=42.88 Aligned_cols=199 Identities=11% Similarity=0.063 Sum_probs=120.7
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceE-EEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEec
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~-iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
..++.|-=+.||..+|++..+.-..+.+..+++.+... ...+.. .....+++. .+--|.+.+...++ |.+.++.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~--I~v~~~d 114 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR--IEVSNLD 114 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE--EEEEETT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCE--EEEEECC
Confidence 34677888999999999999999999999999987642 223332 477888898 24445555555554 4555654
Q ss_pred CCcEEeEeeeccccCCcceeeeeec--ceeEEeec--CceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-e
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-R 339 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-s 339 (411)
|+....+. ...-.....|++.+ +++++.-- +..|.-.++.-..+..+-.+.+..|.++.+=+ ...||.+= .
T Consensus 115 -G~~~~~l~--~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 115 -GSLRKVLF--WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp -SCSCEEEE--CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETT
T ss_pred -CCCEEEEE--eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCC
Confidence 55444421 13344566788865 57788763 45677778765555554445666888766554 45888887 6
Q ss_pred cCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 340 NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 340 d~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.+.|...+++|.-.+.+-.-.+-||. .|.+.+| .+.+ +|- .+++|..-|..||+
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~~P~----gi~~~~~-~ly~---td~-------~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLPHPF----ALTLFED-ILYW---TDW-------STHSILACNKYTGE 245 (619)
T ss_dssp TCCEEEESSSCCEEC---------CC----CEEESSS-EEEE---ECT-------TTCSEEEEESSSCC
T ss_pred CCeEEEecCCCCccEEEEeCCCCCce----EEEEeCC-EEEE---ecC-------CCCEEEEEECCCCc
Confidence 78999999998755555332333443 5555544 3322 331 23467777777765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=5.6 Score=41.12 Aligned_cols=171 Identities=12% Similarity=0.100 Sum_probs=107.6
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEE--------EeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLY--------SISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iy--------sLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
|.+|++.+... + -+-+||.++.+... .+....|..+... +|.+.+-.. + -|-.|+..+++. .
T Consensus 460 d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~---Gl~~~~~~~~~~--~ 530 (795)
T 4a2l_A 460 DGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--E---GLSVFKQEGLDI--Q 530 (795)
T ss_dssp CSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--S---CEEEEEEETTEE--E
T ss_pred CCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--C---ceEEEeCCCCeE--E
Confidence 44677666554 3 35567776654332 2234567777776 676544332 2 367788888876 2
Q ss_pred eee----ccccCCcceeeeeec-ceeEEeecCceeeEEEcccceEEEeeccccCCCc-eEEEEeec---eeEEEEecCeE
Q 015220 273 FNH----LLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNFELTEVSRTEFMTPS-AFIFLYEN---QLFLTFRNRTV 343 (411)
Q Consensus 273 ~~~----LL~h~K~I~FLE~~~-ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps-AfifLy~s---qlFlSfsd~tI 343 (411)
+.. .-.+...|..|.... +.+.|...+ -|..||..+++...... ..+.|. .+..+++. +++++- ++-|
T Consensus 531 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~-~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl 607 (795)
T 4a2l_A 531 KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNT-TNGLPNNVVYGILEDSFGRLWLST-NRGI 607 (795)
T ss_dssp ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECG-GGTCSCSCEEEEEECTTSCEEEEE-TTEE
T ss_pred EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCC-CCCCchhheEEEEECCCCCEEEEc-CCce
Confidence 221 011334566676654 456777766 89999998887766532 233444 45555543 566665 6778
Q ss_pred EEEecCCceeeeeccccccC-CCCccceEEEcCCCCEEEEEe
Q 015220 344 AVWNFRGELVTSFEDHLLWH-PDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 344 ~iWn~~Gel~~s~e~H~~~~-~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
..|++....++.+..+.+.. ...+.++++.++||.+.+++.
T Consensus 608 ~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~ 649 (795)
T 4a2l_A 608 SCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGI 649 (795)
T ss_dssp EEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEET
T ss_pred EEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecC
Confidence 88999977788887666543 334457899999999999874
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=3.3 Score=37.49 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=103.9
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEec--------------------cCceeEEEEe--CCEE
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS--------------------DKNVQEIKIS--PGIM 246 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs--------------------~~~VqeIkIS--dG~~ 246 (411)
..+..|.=+-+|. +|.++.....++.+..||..+.+.. +... ......+.+. +|.+
T Consensus 16 g~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 16 APSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp CSSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred CccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 3456787777775 4664444555666666777654321 2211 1257778887 4664
Q ss_pred EEEEecCCCceeeEEEEecCCcEEeEeeecc-c-cCCcceeeeeec-c-eeEEeec------------------CceeeE
Q 015220 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLL-H-RNKKVDFIEQFN-E-KLLVKQE------------------NENLQI 304 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL-~-h~K~I~FLE~~~-e-kllIKQe------------------~~~LkI 304 (411)
.+.+..+. +..++..+|+.. .+.... + .-.-.+-|.+.+ + .+++... ...|..
T Consensus 95 -~v~d~~~~---i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 95 -YIVDCYYH---LSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp -EEEETTTE---EEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred -EEEECCCC---EEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 44443332 667787777532 211111 1 111234477776 4 4566542 256888
Q ss_pred EEcccceEEEeeccccCCCceEEEEee-ceeEEEE-ecCeEEEEecCCcee---eeeccccccCCCCccceEEEcCCCCE
Q 015220 305 LDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTF-RNRTVAVWNFRGELV---TSFEDHLLWHPDCNTNNIYITSDQDL 379 (411)
Q Consensus 305 ~dL~t~e~~~v~~T~f~hpsAfifLy~-sqlFlSf-sd~tI~iWn~~Gel~---~s~e~H~~~~~~c~~n~i~Is~Dqd~ 379 (411)
||..+++...+. ..+..|..+.+-.. +.+|++= .++.|.++++.|+.+ +.+.+ . +. -+.+++.+||.+
T Consensus 170 ~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~---~g--P~gi~~d~~G~l 242 (322)
T 2fp8_A 170 YDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I---PN--PGNIKRNADGHF 242 (322)
T ss_dssp EETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C---SS--EEEEEECTTSCE
T ss_pred EeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C---CC--CCCeEECCCCCE
Confidence 898888765543 33456665333222 2477775 568999999986422 22221 1 12 577999999998
Q ss_pred EEEEec
Q 015220 380 IISYCK 385 (411)
Q Consensus 380 iiS~~~ 385 (411)
.|+-..
T Consensus 243 ~va~~~ 248 (322)
T 2fp8_A 243 WVSSSE 248 (322)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 888655
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=4.6 Score=42.03 Aligned_cols=142 Identities=14% Similarity=0.099 Sum_probs=84.8
Q ss_pred eeEEEEecCCcEEeEeeeccccCC--cce-eeeeecceeEEeec------CceeeEEEcccceEEE-eecc--c------
Q 015220 258 PLKILSIEDGTVLKSFNHLLHRNK--KVD-FIEQFNEKLLVKQE------NENLQILDVRNFELTE-VSRT--E------ 319 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~LL~h~K--~I~-FLE~~~ekllIKQe------~~~LkI~dL~t~e~~~-v~~T--~------ 319 (411)
.|.-+|.+||+++.++..- .+.. .+. .-.+..+.+++-.. +..|..+|..||+..= .... .
T Consensus 132 ~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~ 210 (599)
T 1w6s_A 132 NVAALNAETGETVWKVENS-DIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLA 210 (599)
T ss_dssp EEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred EEEEEECCCCCEEEeecCC-CCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccc
Confidence 4667899999999986521 1110 111 11345666676653 5799999999998653 1111 0
Q ss_pred ----cCCC----------------------ce--EEEEe--eceeEEEEec----------------CeEEEEecC-Cce
Q 015220 320 ----FMTP----------------------SA--FIFLY--ENQLFLTFRN----------------RTVAVWNFR-GEL 352 (411)
Q Consensus 320 ----f~hp----------------------sA--fifLy--~sqlFlSfsd----------------~tI~iWn~~-Gel 352 (411)
+.+| .. -..+. ...+|+...+ ++|-.+|.+ |++
T Consensus 211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~ 290 (599)
T 1w6s_A 211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA 290 (599)
T ss_dssp TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE
T ss_pred cccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce
Confidence 0000 00 11111 2245555444 388899998 998
Q ss_pred eee--eccccccCCCCccceEEEc---CCC---CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 353 VTS--FEDHLLWHPDCNTNNIYIT---SDQ---DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 353 ~~s--~e~H~~~~~~c~~n~i~Is---~Dq---d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+=. ...|..|.-+..-.-+.+. .|| ++++.++++ |.+-+.|..|||++
T Consensus 291 ~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~----------G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 291 KFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRN----------GIVYTLDRTDGALV 346 (599)
T ss_dssp EEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTT----------SEEEEEETTTCCEE
T ss_pred eeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCC----------cEEEEEECCCCCEe
Confidence 754 4556677555543334443 678 577777665 59999999999875
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=93.77 E-value=2 Score=42.25 Aligned_cols=242 Identities=12% Similarity=0.047 Sum_probs=127.7
Q ss_pred ccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCC
Q 015220 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (411)
Q Consensus 115 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~ 194 (411)
+.-..+|..+|+..-++- ...-...|-+....+ |+++....... -+. .+. ....+....+. .+ ..+.+
T Consensus 162 ~~I~~id~~~g~v~~~~~--~~~~P~giavd~dG~-lyVad~~~~~~---~~g-v~~--~~~~~~~~~~~-~~--~~~~~ 229 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIKTT--NIGQCADVNFTLNGD-MVVVDDQSSDT---NTG-IYL--FTRASGFTERL-SL--CNARG 229 (433)
T ss_dssp SCEEEEETTTTEEEEECC--CCSCEEEEEECTTCC-EEEEECCSCTT---SEE-EEE--ECGGGTTCCEE-EE--EECSS
T ss_pred CCEEEEECCCCEEEEeec--CCCCccEEEECCCCC-EEEEcCCCCcc---cce-EEE--EECCCCeeccc-cc--cccCC
Confidence 566667766666554432 444567777777777 44432111000 000 110 11122221111 22 25889
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCceE---EEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~---iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
|--+-+|..+|.+.+....++.+.++|..+.+. +...... .-.-+.++ +|-.|.+.+..++++..-=++-.+|+.
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL 309 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc
Confidence 999999999999999988889888999886654 2222221 11236666 555555555555443322222224432
Q ss_pred EeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEE---------eeceeEEEE-e
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL---------YENQLFLTF-R 339 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL---------y~sqlFlSf-s 339 (411)
..... +.+. ++. .+. ..+ ......|.+|..+.++ ....+|++= .
T Consensus 310 ~~~~~-~ag~---------~g~------~g~-------~dg---~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 310 AVPYI-VCGQ---------HSS------PGW-------VDG---MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp CCCEE-EEEC---------TTC------CCC-------BCE---EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CcEEE-EEec---------CCC------Ccc-------CCC---cccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 11000 0010 000 000 001 0123567788887774 344788887 6
Q ss_pred cCeEEEEecCCceeeeeccc-----cccC--------CCCccceEEEc-CCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 340 NRTVAVWNFRGELVTSFEDH-----LLWH--------PDCNTNNIYIT-SDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 340 d~tI~iWn~~Gel~~s~e~H-----~~~~--------~~c~~n~i~Is-~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
++.|+.++..|.+. ++-+. .++. .--.-..|+++ ++|.+.|+=... ..|...+++
T Consensus 364 n~~I~~~~~~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n----------~rIr~i~~e 432 (433)
T 4hw6_A 364 SHTVRVLTPEGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN----------HRVRKIAPE 432 (433)
T ss_dssp TTEEEEECTTSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG----------TEEEEEEEC
T ss_pred CCEEEEECCCCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC----------CEEEEEecC
Confidence 78999999999654 44332 1111 11234579999 888888864433 377766653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.43 Score=50.13 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=105.7
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEecC
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
.+..|.-+-+|..+|++.+.....+.+.|+++.+-.....+.. .....|++. +|.|..+....+++| .++++ +
T Consensus 451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I--~~~~~-d 527 (699)
T 1n7d_A 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKI--KKGGL-N 527 (699)
T ss_dssp CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCE--EBCCS-S
T ss_pred CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeE--EEEeC-C
Confidence 4678999999999999999988899999999986543333332 356677887 455444332222332 23333 4
Q ss_pred CcEEeEeeeccccCCcceeeeeec--ceeEEee-cCceeeEEEcccceEEEeec--cccCCCceEEEEeeceeEEEE-ec
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQ-ENENLQILDVRNFELTEVSR--TEFMTPSAFIFLYENQLFLTF-RN 340 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQ-e~~~LkI~dL~t~e~~~v~~--T~f~hpsAfifLy~sqlFlSf-sd 340 (411)
|+....+. ...-.-.+-|++.+ ..|++.. ..+.|..+|+..+.+..+.. ..+.+|.++.+ ....+|.+= .+
T Consensus 528 G~~~~~l~--~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav-d~~~lywtd~~~ 604 (699)
T 1n7d_A 528 GVDIYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIIN 604 (699)
T ss_dssp SCCCCEES--CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE-ETTEEEEECSTT
T ss_pred CCCeeEEE--eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE-ECCEEEEEeCCC
Confidence 54443321 01112345688874 5676665 66789999997655555433 35678988765 556888887 67
Q ss_pred CeEEEEecC-Cceeeeecccc
Q 015220 341 RTVAVWNFR-GELVTSFEDHL 360 (411)
Q Consensus 341 ~tI~iWn~~-Gel~~s~e~H~ 360 (411)
+.|..++.. |+.++.+....
T Consensus 605 ~~V~~~d~~~G~~~~~i~~~~ 625 (699)
T 1n7d_A 605 EAIFSANRLTGSDVNLLAENL 625 (699)
T ss_dssp TCEEEEETTTEEEEECCCTTC
T ss_pred CeEEEEEccCCCceEEeecCC
Confidence 899999975 99888876543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.40 E-value=8.2 Score=39.79 Aligned_cols=232 Identities=14% Similarity=0.087 Sum_probs=142.8
Q ss_pred cccceeeecccccEEEEEeCCC--CceEEEEEe-------ecCCCeEEEEEeEecCCCceeeeEeeehhhh-hh--CCCC
Q 015220 114 SGVCAAFCRETNQRICFLNVTA--DEVIRSLFY-------NKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RR--GKPD 181 (411)
Q Consensus 114 sG~c~af~~~t~~~ic~lN~s~--~evIrsify-------N~~n~slI~vSv~~sd~~s~L~cr~~~~~~i-~~--gk~~ 181 (411)
.+..+.+|..+++..-++..+. ..-.+.|-+ ....+.|+++..+.... ...+++. ++ ++ |+..
T Consensus 161 ~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~---~~~~~V~--~i~r~~~G~~~ 235 (496)
T 3kya_A 161 HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG---DESPSVY--IIKRNADGTFD 235 (496)
T ss_dssp EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG---GGEEEEE--EEECCTTSCCS
T ss_pred CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc---ccCceEE--EEecCCCCcee
Confidence 4567788888777776665432 335788877 77777777754432110 1111111 12 11 2321
Q ss_pred C-C-CcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEee-------Cc--------------eEEEEeccCc-ee
Q 015220 182 A-G-FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-------NY--------------TMLYSISDKN-VQ 237 (411)
Q Consensus 182 ~-~-~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~-------~Y--------------s~iysLs~~~-Vq 237 (411)
+ . .-... ...||--+-+|+.+|.+.+....++.+.++|+. +. +.++++.+.. -.
T Consensus 236 ~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~ 313 (496)
T 3kya_A 236 DRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEF 313 (496)
T ss_dssp TTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCE
T ss_pred ecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCce
Confidence 1 1 01222 478999999999999999999999999999998 22 2466665442 35
Q ss_pred EEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE--eEeeecccc-------------CCcceeeeee--------ccee
Q 015220 238 EIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL--KSFNHLLHR-------------NKKVDFIEQF--------NEKL 293 (411)
Q Consensus 238 eIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L--~t~~~LL~h-------------~K~I~FLE~~--------~ekl 293 (411)
-|.++ +|..|.+.+..+.+|..-=++-.++++. .++.-..+. +.|-+-+... ...|
T Consensus 314 ~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~l 393 (496)
T 3kya_A 314 QIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDF 393 (496)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEE
T ss_pred EEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeE
Confidence 78888 8887778887777775444566666542 222111010 1233345553 3467
Q ss_pred EEee-cCceeeEEEcccceEEEeecc-----------------------ccCCCceEEEEee-ceeEEEE-ecCeEEEEe
Q 015220 294 LVKQ-ENENLQILDVRNFELTEVSRT-----------------------EFMTPSAFIFLYE-NQLFLTF-RNRTVAVWN 347 (411)
Q Consensus 294 lIKQ-e~~~LkI~dL~t~e~~~v~~T-----------------------~f~hpsAfifLy~-sqlFlSf-sd~tI~iWn 347 (411)
+|+- ++|.|+.+| .+|....+.-+ .|.+|..+.+-.. ..||++= .++.||.++
T Consensus 394 yVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 394 YFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp EEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 7765 889999999 67766654321 3556766554443 5788887 677999999
Q ss_pred cCCcee
Q 015220 348 FRGELV 353 (411)
Q Consensus 348 ~~Gel~ 353 (411)
+.|+..
T Consensus 473 ~~~~~~ 478 (496)
T 3kya_A 473 MEQEEN 478 (496)
T ss_dssp ECCCC-
T ss_pred CCCCcc
Confidence 997744
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=9 Score=39.86 Aligned_cols=194 Identities=9% Similarity=0.026 Sum_probs=120.6
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEecCC
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDG 267 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG 267 (411)
++.|-=+.||..+|++..+...++.+..+++.....-..+.. .....+++. .|.+ .+.+...++ |.+.++. |
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L-Y~tD~~~~~--I~v~~~d-G 111 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL-YWADTGTNR--IEVSKLD-G 111 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE-EEEETTTTE--EEEEETT-S
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE-EEEECCCCE--EEEEecC-C
Confidence 567888999999999999999999999999977543333332 356677886 4543 344444443 4555654 4
Q ss_pred cEEeEeeeccccCCcceeeeeec--ceeEEeec--CceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-ecC
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-RNR 341 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-sd~ 341 (411)
+....+. -..-.....|++.+ ++|++..- +.+|.-.|+--.++..+- +.+.+|..+.+=+ ...||.+= .++
T Consensus 112 ~~~~~l~--~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 112 QHRQVLV--WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp TTCEEEE--CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTT
T ss_pred CcEEEEE--eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCC
Confidence 4333311 02224456788874 67788873 578888888766665543 4566887766554 35788887 778
Q ss_pred eEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 342 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 342 tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.|...+++|.-.+.+.+... +| ..+++.+ +.|+-. | -.+++|...|..||+
T Consensus 189 ~I~~~d~dG~~~~v~~~~l~-~P----~glav~~--~~ly~t--D-------~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 189 LIESSNMLGLNREVIADDLP-HP----FGLTQYQ--DYIYWT--D-------WSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEETTSCSCEEEEECCS-CE----EEEEEET--TEEEEE--E-------TTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCceEEeeccCC-Cc----eEEEEEC--CEEEEe--c-------CCCCEEEEEECCCCC
Confidence 99999999764455554433 33 3455544 333221 2 123466666666664
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=93.18 E-value=5.2 Score=36.94 Aligned_cols=164 Identities=15% Similarity=0.145 Sum_probs=109.5
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceE--EEEeccCceeEEEEe--CCEEEEEEecCCCceeeEEEEec
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~--iysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
..+..|.-+-+|..+|++.+.....+.+.|+|+..-.. +..-....-..+++. +|.|.......+++ |..+++
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~--I~~~~~- 150 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK--IKKGGL- 150 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE--EEEEET-
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe--EEEEcC-
Confidence 34678999999999999999999999999999976432 222223478899997 46555444322222 233333
Q ss_pred CCcEEeEeeeccccCCcceeeeee--cceeEEee-cCceeeEEEcccceEEEeec--cccCCCceEEEEeeceeEEEE-e
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQ-ENENLQILDVRNFELTEVSR--TEFMTPSAFIFLYENQLFLTF-R 339 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQ-e~~~LkI~dL~t~e~~~v~~--T~f~hpsAfifLy~sqlFlSf-s 339 (411)
+|+....+.. ..-.-.+-|.+. .+.+++.. +.+.|..+|+..+.+..+.. ..+.||.++.. ....+|.+= .
T Consensus 151 dG~~~~~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav-~~~~ly~~d~~ 227 (316)
T 1ijq_A 151 NGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDII 227 (316)
T ss_dssp TSCCEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETT
T ss_pred CCCCeEEEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEE-ECCEEEEEECC
Confidence 6776555321 112335567787 45676665 66799999997655554432 34678988655 677899888 7
Q ss_pred cCeEEEEecC-Cceeeeeccc
Q 015220 340 NRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e~H 359 (411)
++.|...+.. |+.++.+...
T Consensus 228 ~~~V~~~~~~~g~~~~~i~~~ 248 (316)
T 1ijq_A 228 NEAIFSANRLTGSDVNLLAEN 248 (316)
T ss_dssp TTEEEEEETTTCCCCEEEECS
T ss_pred CCeEEEEeCCCCcceEEEecC
Confidence 7899999974 8877766543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=9.6 Score=39.39 Aligned_cols=170 Identities=14% Similarity=0.144 Sum_probs=100.1
Q ss_pred CCCe-EEEeecCCCeEEEEEeeCceEE-EE-----eccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 203 VNGK-VLTYSAQDSIYKVFDLKNYTML-YS-----ISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 203 ~NGk-iLt~~~~ds~ykVWdL~~Ys~i-ys-----Ls~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
.+|+ +.+.. .++-+-+||.++.+.. +. +....|..+... +|.+.+-.. . -|.+++.++++...-..
T Consensus 415 ~~g~~lWigt-~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~---Gl~~~~~~~~~~~~~~~ 488 (795)
T 4a2l_A 415 EKKSLVYIGT-HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--S---ALVRFNPEQRSFTTIEK 488 (795)
T ss_dssp TTTTEEEEEE-TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--S---CEEEEETTTTEEEECCB
T ss_pred CCCCEEEEEe-CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--C---ceeEEeCCCCeEEEccc
Confidence 4555 44432 2234556676665432 11 344577777776 566443322 1 37778888886543211
Q ss_pred e----ccccCCcceeeeeecc-eeEEeecCceeeEEEcccceEEEeec---cccCCCceEEEEeec---eeEEEEecCeE
Q 015220 275 H----LLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNFELTEVSR---TEFMTPSAFIFLYEN---QLFLTFRNRTV 343 (411)
Q Consensus 275 ~----LL~h~K~I~FLE~~~e-kllIKQe~~~LkI~dL~t~e~~~v~~---T~f~hpsAfifLy~s---qlFlSfsd~tI 343 (411)
. -+ +...|..|....+ .+.|... +-|-.||..+++. .... ..-.....+.++++. +++++-.+ -+
T Consensus 489 ~~~~~~~-~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl 564 (795)
T 4a2l_A 489 EKDGTPV-VSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GF 564 (795)
T ss_dssp CTTCCBC-CCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CE
T ss_pred ccccccc-CCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-Cc
Confidence 0 11 1245666655544 4667766 6799999998876 4321 111123356667763 56666554 78
Q ss_pred EEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEE
Q 015220 344 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 344 ~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
-.||.....++.+....+. |+-.+..++..++|.+-++.
T Consensus 565 ~~~d~~~~~~~~~~~~~gl-~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 565 YCFNEKDKQIKRYNTTNGL-PNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp EEEETTTTEEEEECGGGTC-SCSCEEEEEECTTSCEEEEE
T ss_pred eeECCCCCcEEEeCCCCCC-chhheEEEEECCCCCEEEEc
Confidence 8899987766766544332 34457888899999999987
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.92 E-value=7.5 Score=38.02 Aligned_cols=251 Identities=11% Similarity=0.062 Sum_probs=132.6
Q ss_pred ceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 185 (411)
+.|++....+.-..||..+++.. .+.. ...--+.|-+....+.|+++. +.... +.-+... ..+.|.+.....
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v~-~~~~-~~~~P~~ia~d~~G~~lyvad-~~~~~---~~~~v~~--~~~~g~~~~~~~ 221 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYVS-TVYS-GLSKVRTICWTHEADSMIITN-DQNNN---DRPNNYI--LTRESGFKVITE 221 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEEE-EEEC-CCSCEEEEEECTTSSEEEEEE-CCSCT---TSEEEEE--EEGGGTSCSEEE
T ss_pred CeEEEEeCCCcEEEEECCCCEEE-EEec-CCCCcceEEEeCCCCEEEEEe-CCCCc---ccceEEE--EeCCCceeeeee
Confidence 33443333355566776655433 3333 333455666666666555533 21111 1111111 112343321111
Q ss_pred ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceE--EEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEE
Q 015220 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKI 261 (411)
Q Consensus 186 LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~--iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKI 261 (411)
+ ..+.+|-.+-+|..+|.+.+....++.+.+|++.+.+. +..+.+. .-.-+.++ +|..|.+.+..++++..-=
T Consensus 222 l---~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~ 298 (430)
T 3tc9_A 222 L---TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSD 298 (430)
T ss_dssp E---EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred e---ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEe
Confidence 2 24789999999999999999998899999999987653 3344322 34457777 6765666665555544332
Q ss_pred EEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEee---------c
Q 015220 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE---------N 332 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~---------s 332 (411)
++-.+|+...... +.+. ++ +.+ ...+ ......|.+|..-+|+.. .
T Consensus 299 ~d~~~~~~~~~~~-~ag~---------~g------~~g-------~~dg---~~~~a~~~~P~~gv~v~~~~y~~~D~~g 352 (430)
T 3tc9_A 299 YDWKTKRLTTPYI-VCGQ---------QG------AKD-------WVDG---VGKKARMHAPRQGTFVKNPAYKGSSDEY 352 (430)
T ss_dssp EETTTTEECCCEE-EEEC---------TT------CBC-------CBCE---EGGGCBBSSEEEEEEEECGGGTTSSCCE
T ss_pred CCcccccccceEE-Eecc---------CC------CCC-------CCCC---CCcceEeCCCcceEEEccccccccCCCC
Confidence 3322333211000 0000 00 000 0001 112345778886677753 3
Q ss_pred eeEEEE-ecCeEEEEecCCceeeeeccc-----ccc--------CCCCccceEEEcC-CCCEEEEEecCCCCCccccCCc
Q 015220 333 QLFLTF-RNRTVAVWNFRGELVTSFEDH-----LLW--------HPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~Gel~~s~e~H-----~~~--------~~~c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
.+|++= .++.|+.++.+|.+.+-. +. .+| +.-..-..|+++| +|.++|+=... .
T Consensus 353 ~lyvaD~~n~~I~~i~~~G~v~~~~-g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n----------~ 421 (430)
T 3tc9_A 353 DFYFCDRENHCIRILTPQGRVTTFA-GRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDREN----------R 421 (430)
T ss_dssp EEEEEEGGGTEEEEECTTSEEEEEE-ECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG----------T
T ss_pred eEEEEECCCcEEEEECCCCcEEEEE-eCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCC----------C
Confidence 788887 678999999889755432 22 111 1122457899999 57787774433 3
Q ss_pred eEEEeee
Q 015220 398 KLFVSLL 404 (411)
Q Consensus 398 tI~i~~i 404 (411)
.|...++
T Consensus 422 rIr~i~~ 428 (430)
T 3tc9_A 422 RIRKIGY 428 (430)
T ss_dssp EEEEEEE
T ss_pred eEEEEcc
Confidence 6666554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.89 E-value=4.9 Score=35.79 Aligned_cols=194 Identities=8% Similarity=0.025 Sum_probs=110.5
Q ss_pred CCeEEEeecCC-----CeEEEEEeeCce-----EEEEeccC-ceeEEEEeCCEEEEEEecCCC--ceeeEEEEecCCcEE
Q 015220 204 NGKVLTYSAQD-----SIYKVFDLKNYT-----MLYSISDK-NVQEIKISPGIMLLIFTKASG--HVPLKILSIEDGTVL 270 (411)
Q Consensus 204 NGkiLt~~~~d-----s~ykVWdL~~Ys-----~iysLs~~-~VqeIkISdG~~Lai~q~t~~--~ipiKIl~I~tG~~L 270 (411)
+++++++++.+ +.+-+||+.+.+ .+-.+... .-..+.+.++.++++.-.... ...+-++|+.+++-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 56777777643 456677776643 44333322 222333347777777644332 335778888887744
Q ss_pred eEeeeccccCCcceeeeeecceeEEeec------CceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-e----
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQE------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-R---- 339 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQe------~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-s---- 339 (411)
.-. .++....-......++++++--+ .+.+.+||+.+++-.+++..-......-.++...++|+.+ .
T Consensus 142 ~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 219 (301)
T 2vpj_A 142 MLG--DMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA 219 (301)
T ss_dssp EEE--ECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS
T ss_pred ECC--CCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCc
Confidence 422 23333333456667888877643 4678999999998888743322111222334456888887 3
Q ss_pred -cCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 340 -NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 340 -d~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.+.+.+||+.-.--+.+.. +. .+-+.-..+.+ ++.+++-|..+.. .....|-++|+.+++
T Consensus 220 ~~~~v~~yd~~~~~W~~~~~-~p-~~r~~~~~~~~--~~~i~v~GG~~~~-----~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 220 HLSSVEAYNIRTDSWTTVTS-MT-TPRCYVGATVL--RGRLYAIAGYDGN-----SLLSSIECYDPIIDS 280 (301)
T ss_dssp BCCCEEEEETTTTEEEEECC-CS-SCCBSCEEEEE--TTEEEEECCBCSS-----SBEEEEEEEETTTTE
T ss_pred ccceEEEEeCCCCcEEECCC-CC-CcccceeEEEE--CCEEEEEcCcCCC-----cccccEEEEcCCCCe
Confidence 3578999998443333321 11 22222223333 7777777765531 123678889988765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=92.44 E-value=7.2 Score=36.63 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=108.1
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEec
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
..+..|.=+-+|..+|.+.......+.+.|+++..-..-.-+.+ ..-..|++. .|.|.......+.+ |..+++
T Consensus 76 ~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~--I~r~~~- 152 (318)
T 3sov_A 76 SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK--IERAGM- 152 (318)
T ss_dssp ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE--EEEEET-
T ss_pred CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE--EEEEEc-
Confidence 34678999999999999999999999999999976432222222 267788887 46665554343343 223333
Q ss_pred CCcEEeEeeeccccCCcceeeeee--cceeEEe-ecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecC
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNR 341 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~ 341 (411)
+|+....+.. ..-.-.+-|.+. .+.|++. .+.+.|..+|+..+.+..+......+|.+... ....+|.+= .++
T Consensus 153 dG~~~~~~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav-~~~~lywtd~~~~ 229 (318)
T 3sov_A 153 DGSSRFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL-FEDILYWTDWSTH 229 (318)
T ss_dssp TSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEE-ETTEEEEEETTTT
T ss_pred CCCCeEEEEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEE-eCCEEEEEecCCC
Confidence 5654444210 111233567777 4566665 46789999999765555554456789988764 677899997 778
Q ss_pred eEEEEecC-Cceeeeec
Q 015220 342 TVAVWNFR-GELVTSFE 357 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e 357 (411)
.|...|.. |+..+.+.
T Consensus 230 ~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 230 SILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTTCCSCEEEE
T ss_pred eEEEEECCCCCceEEEe
Confidence 99999995 88665543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.34 E-value=5.9 Score=35.43 Aligned_cols=194 Identities=6% Similarity=-0.031 Sum_probs=111.8
Q ss_pred CCeEEEeecCC----CeEEEEEeeCce--EEEEeccC-ceeEEEEeCCEEEEEEecC---CCceeeEEEEecCCcEEeEe
Q 015220 204 NGKVLTYSAQD----SIYKVFDLKNYT--MLYSISDK-NVQEIKISPGIMLLIFTKA---SGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 204 NGkiLt~~~~d----s~ykVWdL~~Ys--~iysLs~~-~VqeIkISdG~~Lai~q~t---~~~ipiKIl~I~tG~~L~t~ 273 (411)
++++++.++.+ +..-+||..+.+ .+-.+... .-..+.+-++.++++.-.. ....-+-++|+.+++-..--
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 56777776643 566677777654 44444422 1222333477777776543 22345677888888643321
Q ss_pred eeccccCCcceeeeeecceeEEeec----------CceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ec--
Q 015220 274 NHLLHRNKKVDFIEQFNEKLLVKQE----------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN-- 340 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekllIKQe----------~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd-- 340 (411)
.++....-..+...++++++--+ .+.+.+||+.+.+-.+++........+-.++...++|+.+ .+
T Consensus 135 --~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 212 (306)
T 3ii7_A 135 --SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGL 212 (306)
T ss_dssp --CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT
T ss_pred --CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCC
Confidence 23333334456677888887654 5668899999998888754332222223344466888887 32
Q ss_pred ---CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 341 ---RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 341 ---~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+.+.+||+.-+--+.+.. +. .+-..-..+.+ ++.++|-|..+.. .....+-++|+.+.+
T Consensus 213 ~~~~~~~~yd~~~~~W~~~~~-~p-~~r~~~~~~~~--~~~i~v~GG~~~~-----~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 213 GGLDNVEYYDIKLNEWKMVSP-MP-WKGVTVKCAAV--GSIVYVLAGFQGV-----GRLGHILEYNTETDK 274 (306)
T ss_dssp EEBCCEEEEETTTTEEEECCC-CS-CCBSCCEEEEE--TTEEEEEECBCSS-----SBCCEEEEEETTTTE
T ss_pred CCCceEEEeeCCCCcEEECCC-CC-CCccceeEEEE--CCEEEEEeCcCCC-----eeeeeEEEEcCCCCe
Confidence 578889988443333321 11 12222222333 7778888776531 123588899988865
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=12 Score=38.70 Aligned_cols=175 Identities=10% Similarity=0.107 Sum_probs=111.9
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEecCC
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDG 267 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG 267 (411)
++.|-=+.||..+|++..+....+.+..+++.+...-..+.. ....-+++. .|.+ .+.+...+++ .+.++. |
T Consensus 348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~l-Y~tD~~~~~I--~v~~~~-G 423 (619)
T 3s94_A 348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNL-YWTDTGTDRI--EVTRLN-G 423 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE-EEEETTTTEE--EEEETT-S
T ss_pred cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcE-EEEeCCCCcE--EEEeCC-C
Confidence 566777999999999999999999999999987433222332 256678886 4554 3444444444 456664 4
Q ss_pred cEEeEeeeccccCCcceeeeeec--ceeEEeecC--ceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-ecC
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQEN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-RNR 341 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~--~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-sd~ 341 (411)
+....+. -..-.....|++.+ +++++.--+ .+|.-.++--..+..+-.+.+..|.....=+ ...||.+= ..+
T Consensus 424 ~~~~~l~--~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~ 501 (619)
T 3s94_A 424 TMRKILI--SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD 501 (619)
T ss_dssp CSCEEEE--CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CeEEEEE--ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCC
Confidence 4333311 12234566788885 577777633 5677777765555555556677888754443 45888887 667
Q ss_pred eEEEEecCCceeeeeccccccCCCCccceEEEcCC
Q 015220 342 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD 376 (411)
Q Consensus 342 tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~D 376 (411)
+|+..+++|.-.+++-...+.||. .|++.+|
T Consensus 502 ~I~~~~~dG~~~~~~~~~~l~~P~----glav~~~ 532 (619)
T 3s94_A 502 KIEVMNTDGTGRRVLVEDKIPHIF----GFTLLGD 532 (619)
T ss_dssp EEEEEESSSCCCEEEEECCCCSSC----CEEEETT
T ss_pred EEEEEecCCCceEEEeccCCCCcE----EEEEECC
Confidence 999999998866666443444443 4555443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.08 E-value=6.3 Score=35.18 Aligned_cols=194 Identities=10% Similarity=0.046 Sum_probs=108.3
Q ss_pred CCeEEEeecCC-----CeEEEEEeeCce--EEEEeccC-ceeEEEEeCCEEEEEEecCCCc--eeeEEEEecCCcEEeEe
Q 015220 204 NGKVLTYSAQD-----SIYKVFDLKNYT--MLYSISDK-NVQEIKISPGIMLLIFTKASGH--VPLKILSIEDGTVLKSF 273 (411)
Q Consensus 204 NGkiLt~~~~d-----s~ykVWdL~~Ys--~iysLs~~-~VqeIkISdG~~Lai~q~t~~~--ipiKIl~I~tG~~L~t~ 273 (411)
++++++.++.+ +.+-+||..+.+ .+-.+... .-..+.+-+|.++++.-..... .-+-++|+.+.+-..-.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 56777776643 345667766644 33333322 1223333477777776544322 34667787777644321
Q ss_pred eeccccCCcceeeeeecceeEEeec--------CceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ec----
Q 015220 274 NHLLHRNKKVDFIEQFNEKLLVKQE--------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN---- 340 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekllIKQe--------~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd---- 340 (411)
.++...--..+...++++++--+ ...+.+||+.+++-.+++..-......-.++...++|+.+ .+
T Consensus 141 --~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 218 (302)
T 2xn4_A 141 --PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV 218 (302)
T ss_dssp --CCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSB
T ss_pred --CCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcc
Confidence 23333333456667888887632 4568999999998888643322111222334466888887 32
Q ss_pred -CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 341 -RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 341 -~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+.+.+||+...--+.+... |.+-...-...-++.++|-|..+.. ....++-++|+.+++
T Consensus 219 ~~~~~~yd~~~~~W~~~~~~----~~~r~~~~~~~~~~~i~v~GG~~~~-----~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 219 RKSVEVYDPTTNAWRQVADM----NMCRRNAGVCAVNGLLYVVGGDDGS-----CNLASVEYYNPTTDK 278 (302)
T ss_dssp CCCEEEEETTTTEEEEECCC----SSCCBSCEEEEETTEEEEECCBCSS-----SBCCCEEEEETTTTE
T ss_pred cceEEEEeCCCCCEeeCCCC----CCccccCeEEEECCEEEEECCcCCC-----cccccEEEEcCCCCe
Confidence 5788999885444443321 1111222233337778777765531 223678899988765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.65 E-value=7 Score=34.78 Aligned_cols=195 Identities=8% Similarity=-0.010 Sum_probs=110.1
Q ss_pred CCCeEEEeec-CC-----CeEEEEEeeCce--EEEEeccC-ceeEEEEeCCEEEEEEecCC--CceeeEEEEecCCc---
Q 015220 203 VNGKVLTYSA-QD-----SIYKVFDLKNYT--MLYSISDK-NVQEIKISPGIMLLIFTKAS--GHVPLKILSIEDGT--- 268 (411)
Q Consensus 203 ~NGkiLt~~~-~d-----s~ykVWdL~~Ys--~iysLs~~-~VqeIkISdG~~Lai~q~t~--~~ipiKIl~I~tG~--- 268 (411)
.+++++++++ .+ +.+.+||+.+.+ .+-.+... .-..+...++.++++.-... ...-+-++|+.+++
T Consensus 13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 5677888777 32 355667776654 22223322 22333444777777655432 23457789999887
Q ss_pred EEeEeeeccccCCcceeeeeecceeEEeec------CceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-e--
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQE------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-R-- 339 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~ekllIKQe------~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-s-- 339 (411)
-..- -.++....-..+...++++++--+ .+.+-+||+.+++-.+++.........-.+++..++|+.+ .
T Consensus 93 W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 170 (301)
T 2vpj_A 93 WYSV--APMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG 170 (301)
T ss_dssp CEEE--CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eEEC--CCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCC
Confidence 2221 123333333455666788877643 3578999999998887654322111122233456888876 3
Q ss_pred ---cCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 340 ---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 340 ---d~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.+.+.++|+...--+.+.. + -.+-+. .....-++.+++.|..+.. ....++-++|+.|++
T Consensus 171 ~~~~~~~~~~d~~~~~W~~~~~-~-p~~r~~--~~~~~~~~~i~v~GG~~~~-----~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 171 LNILNSVEKYDPHTGHWTNVTP-M-ATKRSG--AGVALLNDHIYVVGGFDGT-----AHLSSVEAYNIRTDS 233 (301)
T ss_dssp SCBCCCEEEEETTTTEEEEECC-C-SSCCBS--CEEEEETTEEEEECCBCSS-----SBCCCEEEEETTTTE
T ss_pred CcccceEEEEeCCCCcEEeCCC-C-Cccccc--ceEEEECCEEEEEeCCCCC-----cccceEEEEeCCCCc
Confidence 3578899988554443321 1 122222 2233337788888776541 114578889988875
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=91.44 E-value=3.9 Score=42.21 Aligned_cols=118 Identities=9% Similarity=0.048 Sum_probs=77.5
Q ss_pred cceeEEe-ecCceeeEEEcccc----eEEEee-------ccccCCCceEEEEeeceeEEEE-ec------CeEEEEecC-
Q 015220 290 NEKLLVK-QENENLQILDVRNF----ELTEVS-------RTEFMTPSAFIFLYENQLFLTF-RN------RTVAVWNFR- 349 (411)
Q Consensus 290 ~ekllIK-Qe~~~LkI~dL~t~----e~~~v~-------~T~f~hpsAfifLy~sqlFlSf-sd------~tI~iWn~~- 349 (411)
..++++- ..++.|-++|+.+. ++.++- ++..--|-.++++... +++|. .+ +.|.+.|..
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 3455553 46788999999876 555533 2222246666777666 99988 55 699999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecC---------CCCCccccCCceEEEeeecceeee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA---------DSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d---------~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++++.+.+--.. |.-.-..+..+||+++++|-.=. ...+-..+...+|.+||+.+||.+
T Consensus 174 ~~v~~~~~~~~~--~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 174 FEPLGKWEIDRG--DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp CCEEEECCSBCT--TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred CeEEEEEccCCC--CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 999998872211 22233457889999999987510 001111134579999999998864
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=91.29 E-value=8.1 Score=34.86 Aligned_cols=194 Identities=9% Similarity=-0.030 Sum_probs=106.7
Q ss_pred CCeEEEeecC---------CCeEEEEEeeCce--EEEEeccC-ceeEEEEeCCEEEEEEecCCC--ceeeEEEEecCCcE
Q 015220 204 NGKVLTYSAQ---------DSIYKVFDLKNYT--MLYSISDK-NVQEIKISPGIMLLIFTKASG--HVPLKILSIEDGTV 269 (411)
Q Consensus 204 NGkiLt~~~~---------ds~ykVWdL~~Ys--~iysLs~~-~VqeIkISdG~~Lai~q~t~~--~ipiKIl~I~tG~~ 269 (411)
++++++.++. .+.+-+||+.+-+ .+-.+... .-..+.+-+|.++++.-.... ..-+-++|+.+++-
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 5667776664 1345667776644 22222221 112233337777777543322 23466788888764
Q ss_pred EeEeeeccccCCcceeeeeecceeEEeec------CceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ec--
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQE------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN-- 340 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekllIKQe------~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd-- 340 (411)
..-. .++....-......++++++--+ ...+.+||+.+.+-..++..-..-...-.++..+++|+.+ .+
T Consensus 150 ~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 227 (308)
T 1zgk_A 150 HLVA--PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ 227 (308)
T ss_dssp EECC--CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred eECC--CCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCC
Confidence 4321 22333333455666888877643 4678999999998887643221111112234466888887 43
Q ss_pred ---CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 341 ---RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 341 ---~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+.+.+||+..+--+.+.. +. .+-+.-..+. -++.++|-|..+. .....++-++|+.+.+
T Consensus 228 ~~~~~v~~yd~~~~~W~~~~~-~p-~~r~~~~~~~--~~~~i~v~GG~~~-----~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 228 DQLNSVERYDVETETWTFVAP-MK-HRRSALGITV--HQGRIYVLGGYDG-----HTFLDSVECYDPDTDT 289 (308)
T ss_dssp SBCCCEEEEETTTTEEEECCC-CS-SCCBSCEEEE--ETTEEEEECCBCS-----SCBCCEEEEEETTTTE
T ss_pred CccceEEEEeCCCCcEEECCC-CC-CCccceEEEE--ECCEEEEEcCcCC-----CcccceEEEEcCCCCE
Confidence 678999988553333331 11 1222222222 3778888776553 1223688899988875
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.61 E-value=16 Score=37.73 Aligned_cols=172 Identities=16% Similarity=0.170 Sum_probs=99.6
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceE--EEEec-----cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~--iysLs-----~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
|.+|++.+... +-+-+||.++.+. +.... ...|..+... +|.+.+-. ..+. |-.++..+++..+ +
T Consensus 458 d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~G---l~~~~~~~~~~~~-~ 530 (781)
T 3v9f_A 458 DKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGG---VGIYTPDMQLVRK-F 530 (781)
T ss_dssp CTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSC---EEEECTTCCEEEE-E
T ss_pred CCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCC---EEEEeCCCCeEEE-c
Confidence 45666666443 3355567665442 22222 3467777666 66544332 2111 4457766665433 1
Q ss_pred ee--ccccCCcceeeeee-cceeEEeecCcee-eEEEcccceEEEeeccccCCCc-eEEEEeec---eeEEEEecCeEEE
Q 015220 274 NH--LLHRNKKVDFIEQF-NEKLLVKQENENL-QILDVRNFELTEVSRTEFMTPS-AFIFLYEN---QLFLTFRNRTVAV 345 (411)
Q Consensus 274 ~~--LL~h~K~I~FLE~~-~ekllIKQe~~~L-kI~dL~t~e~~~v~~T~f~hps-AfifLy~s---qlFlSfsd~tI~i 345 (411)
.. -| ....|..|... .+.+.|... +-| ..||..+++...... .-+.|. .+..+++. .++++. ++-|-.
T Consensus 531 ~~~~~l-~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~-~~gl~~~~i~~i~~d~~g~lW~~t-~~Gl~~ 606 (781)
T 3v9f_A 531 NQYEGF-CSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQR-KEGLPNTHIRAISEDKNGNIWAST-NTGISC 606 (781)
T ss_dssp CTTTTC-SCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECG-GGTCSCCCCCEEEECSSSCEEEEC-SSCEEE
T ss_pred cCCCCC-CCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccc-cCCCCCceEEEEEECCCCCEEEEc-CCceEE
Confidence 11 12 23455666554 445667666 556 889998887665432 223343 34444443 577765 455888
Q ss_pred EecCCceeeeecccccc-CCCCccceEEEcCCCCEEEEEe
Q 015220 346 WNFRGELVTSFEDHLLW-HPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 346 Wn~~Gel~~s~e~H~~~-~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
++++...++.+...-+. ...++.+.++.++||.+.+++.
T Consensus 607 ~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~ 646 (781)
T 3v9f_A 607 YITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSI 646 (781)
T ss_dssp EETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEET
T ss_pred EECCCCceEEecccCCccccccccCceEECCCCEEEEECC
Confidence 89997777777655443 2345668899999999999874
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=90.49 E-value=5.9 Score=41.44 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=60.8
Q ss_pred EEeeCCCCeEEEeecCC-----CeEEEEEeeCc-eEEE-EeccCceeEEEEe-CCEEEEEEecCCCce--eeEEEEecCC
Q 015220 198 VEFDDVNGKVLTYSAQD-----SIYKVFDLKNY-TMLY-SISDKNVQEIKIS-PGIMLLIFTKASGHV--PLKILSIEDG 267 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~d-----s~ykVWdL~~Y-s~iy-sLs~~~VqeIkIS-dG~~Lai~q~t~~~i--piKIl~I~tG 267 (411)
+.|-.+||+-|+|..+. .++.|+|+.+. +.+- .+. .-...+..| ||.-|+......+.- -|.++++.|+
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 45544789988876552 36999999998 6321 121 123467777 774444333322333 3666777777
Q ss_pred cEEeEeeeccccCCcceeeeeecce--eEEee---cCceeeEEEcccc
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQ---ENENLQILDVRNF 310 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQ---e~~~LkI~dL~t~ 310 (411)
+......+--....-.-.+..++|+ |++.+ ....|.++|+.++
T Consensus 258 ~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 258 QSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp GGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred chhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 5322211000111111224567765 44444 4567888999886
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.29 E-value=18 Score=37.24 Aligned_cols=173 Identities=10% Similarity=0.054 Sum_probs=101.4
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEE----EeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLY----SISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iy----sLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
.+|.+.+... ++-+-++|.++.+.-. .+....|..+... +|.+.+ ... --|-+++.++++..+-.. .-
T Consensus 416 ~~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~----~Gl~~~~~~~~~~~~~~~-~~ 488 (781)
T 3v9f_A 416 SEGNLWFGTY-LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH----AGVFVIDLASKKVIHHYD-TS 488 (781)
T ss_dssp TTSCEEEEET-TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET----TEEEEEESSSSSCCEEEC-TT
T ss_pred CCCCEEEEec-cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC----CceEEEeCCCCeEEeccc-Cc
Confidence 4555555322 2334445555443221 1234577777766 666444 322 136678888887644211 10
Q ss_pred ---ccCCcceeeeee-cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEEecCeEEEEecCC
Q 015220 278 ---HRNKKVDFIEQF-NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTFRNRTVAVWNFRG 350 (411)
Q Consensus 278 ---~h~K~I~FLE~~-~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSfsd~tI~iWn~~G 350 (411)
.....|..|..- .+.+.|...+.-|-.||..+++........-.....+..+++. .++++-.++-|-.||...
T Consensus 489 ~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 489 NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 013456666554 4456778776779999998887766543222122345566653 667666655548899986
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEE
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
.-++.+....+. |+-.+..++..++|.+-++.
T Consensus 569 ~~~~~~~~~~gl-~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 569 FDYQVFQRKEGL-PNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp CCCEEECGGGTC-SCCCCCEEEECSSSCEEEEC
T ss_pred CcEEEccccCCC-CCceEEEEEECCCCCEEEEc
Confidence 656666554443 34457889999999998885
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=89.91 E-value=5.5 Score=41.67 Aligned_cols=131 Identities=15% Similarity=0.282 Sum_probs=93.4
Q ss_pred eeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeE--e---eeccccCCcceeeeeecceeEEeecCceeeEEEcccc
Q 015220 236 VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS--F---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF 310 (411)
Q Consensus 236 VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t--~---~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~ 310 (411)
+..+++....++-+.+.......+-|.|+.++.-... . .-+.|++++|=.|- .+..|||.||.++
T Consensus 27 f~~~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALr----------ag~~lQiFnle~K 96 (494)
T 1bpo_A 27 FSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALK----------AGKTLQIFNIEMK 96 (494)
T ss_dssp TTTEEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEE----------ETTEEEEEETTTT
T ss_pred cceeeeecCceEEEEecCCCCCeEEEEECCCCCcceecccccceeeeCCCCcEEEEe----------cCCeEEEEchHHh
Confidence 3445666666778888777777899999998654421 0 02345555443332 4899999999999
Q ss_pred eEEEeeccccCCCceEEEE-eec-eeEEEEecCeEEEEecCC--ceeeeeccccccCCCCccceEEEcCCCCEEE
Q 015220 311 ELTEVSRTEFMTPSAFIFL-YEN-QLFLTFRNRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (411)
Q Consensus 311 e~~~v~~T~f~hpsAfifL-y~s-qlFlSfsd~tI~iWn~~G--el~~s~e~H~~~~~~c~~n~i~Is~Dqd~ii 381 (411)
+..+ +.-| ++-++|- -++ +.+.-..++.|--|+..| +|+.=|+.|.... +|.+=+--.++|++.++
T Consensus 97 ~klk---s~~~-~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~-~~QIInY~~d~~~kW~~ 166 (494)
T 1bpo_A 97 SKMK---AHTM-TDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLL 166 (494)
T ss_dssp EEEE---EEEC-SSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGT-TCEEEEEEECTTSSEEE
T ss_pred hhhc---ceec-CCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcc-cceEEEEEECCCCCeEE
Confidence 9988 4443 4555552 244 444445899999999987 4999999999886 78888888899998765
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=89.78 E-value=17 Score=35.99 Aligned_cols=163 Identities=10% Similarity=0.102 Sum_probs=91.8
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCc--eEEEEecc-----C---ceeEEEE----eCCEEEEEEecC----
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSISD-----K---NVQEIKI----SPGIMLLIFTKA---- 253 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Y--s~iysLs~-----~---~VqeIkI----SdG~~Lai~q~t---- 253 (411)
-.+|.=+.||+.+|+.++++.-.+++-+||..+. +.+ .+.+ + .++-+.+ .+|.++++....
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 3478889999999999999999999999999743 333 4443 1 4567777 366666654421
Q ss_pred ------CCceeeEEEEec---CCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCc
Q 015220 254 ------SGHVPLKILSIE---DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS 324 (411)
Q Consensus 254 ------~~~ipiKIl~I~---tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps 324 (411)
....-+..+++. ||+++..+.+ =+..+.++ - +++ +.++.+-
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL-~~~~~~~~--~--------------------~~g-------~~~~~~n 140 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNF-EKVQDEFE--K--------------------KAG-------KRPFGVV 140 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEES-HHHHHHHH--H--------------------HHS-------SCCEEEE
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecC-cccccccc--c--------------------ccc-------ccccCCc
Confidence 123446666777 7777665431 00000000 0 000 0000000
Q ss_pred eEEEEeec-eeEEEE-ec-CeEEEEecCCceeeeecccc-ccCCCCccceEEEcCCCCEEEEEecC
Q 015220 325 AFIFLYEN-QLFLTF-RN-RTVAVWNFRGELVTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 325 AfifLy~s-qlFlSf-sd-~tI~iWn~~Gel~~s~e~H~-~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
=+.+... +.|+++ .- +.|-..+++|..+..+.-.. .-...|.-|=|+++|||.+|+.--.+
T Consensus 141 -DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~ 205 (334)
T 2p9w_A 141 -QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGP 205 (334)
T ss_dssp -EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSS
T ss_pred -eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCC
Confidence 0111111 566666 44 56666666677444432111 12345778899999999877765443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.43 E-value=12 Score=33.80 Aligned_cols=163 Identities=7% Similarity=-0.049 Sum_probs=90.8
Q ss_pred EEeCCEEEEEEec-----CCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecC-------ceeeEEEc
Q 015220 240 KISPGIMLLIFTK-----ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN-------ENLQILDV 307 (411)
Q Consensus 240 kISdG~~Lai~q~-----t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~-------~~LkI~dL 307 (411)
.+.++.++++.-. .....-+-++|+.+++-..- -.++...--......++++++--+. +.+-+||+
T Consensus 95 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 95 GEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES--DPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp EEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC--CCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred EEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC--CCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeC
Confidence 3347777776653 23345577888888863322 1233333334566788888877653 57899999
Q ss_pred ccceEEEeeccccCCCceEEEEeeceeEEEE-ec-----CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEE
Q 015220 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN-----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (411)
Q Consensus 308 ~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd-----~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ii 381 (411)
.+.+-.+++..-..-..+-.++...++|+.+ .+ +.+.+||+.-+--+.+.. .-.+-+.- ....-++.+.+
T Consensus 173 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~--~~~~~~~~l~v 248 (315)
T 4asc_A 173 KKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA--FPQERSSL--SLVSLVGTLYA 248 (315)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC--CSSCCBSC--EEEEETTEEEE
T ss_pred CCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC--CCCcccce--eEEEECCEEEE
Confidence 9998888654221111222334466888888 43 368888888543333332 11222222 22233667777
Q ss_pred EEecCCCC--Ccc--ccCCceEEEeeeccee
Q 015220 382 SYCKADSD--DPL--AEGNGKLFVSLLMFVT 408 (411)
Q Consensus 382 S~~~d~~~--~~~--~~~~gtI~i~~i~tGk 408 (411)
-|..+... +.. ......+-++|+.|.+
T Consensus 249 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 249 IGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ECCccccCcCCccccccccCcEEEecCCCCh
Confidence 76654310 000 0122567888888765
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=88.33 E-value=20 Score=35.07 Aligned_cols=80 Identities=21% Similarity=0.412 Sum_probs=35.6
Q ss_pred CcceeecccCCCCeEEee-CCCCeEEEeecCCC--eEEEEEeeCceEEEEeccC--ceeEEEE---eCC-EEEEEEecCC
Q 015220 184 FALFESESLKWPGFVEFD-DVNGKVLTYSAQDS--IYKVFDLKNYTMLYSISDK--NVQEIKI---SPG-IMLLIFTKAS 254 (411)
Q Consensus 184 ~~LF~~~~l~~PgfvEFD-d~NGkiLt~~~~ds--~ykVWdL~~Ys~iysLs~~--~VqeIkI---SdG-~~Lai~q~t~ 254 (411)
..+|.+..++.||.-.|+ +.+|+|.++..++. ..+.+.+.++++ ... +-.-|.+ .|| ..|.+-++..
T Consensus 61 G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~----~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~ 136 (355)
T 3sre_A 61 GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTL----DISSFNPHGISTFIDDDNTVYLLVVNHPG 136 (355)
T ss_dssp SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSC----CGGGCCEEEEEEEECTTCCEEEEEEECST
T ss_pred CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCC----CcCceeeeeeEEEECCCCcEEEEEEECCC
Confidence 457777778999998887 45777777776632 233333332110 001 3333333 234 3455555555
Q ss_pred CceeeEEEEecCC
Q 015220 255 GHVPLKILSIEDG 267 (411)
Q Consensus 255 ~~ipiKIl~I~tG 267 (411)
....+-||.+..+
T Consensus 137 ~~s~ielf~~d~~ 149 (355)
T 3sre_A 137 SSSTVEVFKFQEE 149 (355)
T ss_dssp TCCEEEEEEEETT
T ss_pred CCCeEEEEEEECC
Confidence 5566667666643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=88.31 E-value=2 Score=45.60 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=84.7
Q ss_pred hhhCCCCCCCcceee-cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC----------ceEEEEeccC-ce------
Q 015220 175 IRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----------YTMLYSISDK-NV------ 236 (411)
Q Consensus 175 i~~gk~~~~~~LF~~-~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~----------Ys~iysLs~~-~V------ 236 (411)
+..||++........ +.=..|--+.||. +|.+-+..--++.+-+||+.+ .+.+.+|.-+ +.
T Consensus 312 ~~~~~l~~~~~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp HHHSCCCGGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred ccccccCcccceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 457888766555444 3335699999997 678888888999999999998 5667777643 32
Q ss_pred eEEEEe-CCEEEEEEecCC-Cce----ee-----EEEEecCCc--EEeEeeeccccCCcceeeeeecceeEEeecCceee
Q 015220 237 QEIKIS-PGIMLLIFTKAS-GHV----PL-----KILSIEDGT--VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303 (411)
Q Consensus 237 qeIkIS-dG~~Lai~q~t~-~~i----pi-----KIl~I~tG~--~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~Lk 303 (411)
+.++++ ||.+|.+...-+ ++. |+ -|++|++|+ +++..- - ..-|=+|+-+..+++. ++.+
T Consensus 391 ~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p--~-~~ePh~~~i~~~~~~~-----~~~~ 462 (595)
T 1fwx_A 391 MGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGP--T-FAEPHDAIAVHPSILS-----DIKS 462 (595)
T ss_dssp TTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEE--E-SSCCCCEEEECTTTTT-----TCCS
T ss_pred cceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEc--C-CCCCCceEEccHHHcc-----CCce
Confidence 334556 999999998877 665 66 899997777 222211 1 1233344444445443 5689
Q ss_pred EEEccc
Q 015220 304 ILDVRN 309 (411)
Q Consensus 304 I~dL~t 309 (411)
|||+..
T Consensus 463 ~~~~~~ 468 (595)
T 1fwx_A 463 VWDRND 468 (595)
T ss_dssp SCCTTC
T ss_pred eccCCC
Confidence 998754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.58 E-value=1.4 Score=48.81 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=29.1
Q ss_pred ceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 369 NNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 369 n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..++.++|+.++++=|-|. +++|||+.||+|+
T Consensus 241 vs~~~~~~~~~lftL~~D~----------~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDY----------KLKVLDLSTNQCV 272 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTC----------EEEEEETTTTEEE
T ss_pred EEeeccCCccEEEEEeCCC----------EEEEEECCCCCeE
Confidence 5567789999999999998 9999999999996
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=85.47 E-value=2.7 Score=46.07 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=29.7
Q ss_pred cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 368 TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 368 ~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.+++.++|+.++++=|-|. +++|||+.||+|+
T Consensus 238 ~~~~~~~~~~~~lftl~~D~----------~LRiWsl~t~~~v 270 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDY----------KLKVLDLSTNQCV 270 (950)
T ss_dssp EEEEEEETTTTEEEEEETTC----------EEEEEETTTTEEE
T ss_pred EEEEeecCCCcEEEEEECCC----------EEEEEECCCCCeE
Confidence 45677788999999999998 9999999999996
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=84.88 E-value=13 Score=38.57 Aligned_cols=135 Identities=12% Similarity=0.245 Sum_probs=80.7
Q ss_pred CCCcceeecccC--CCCeEEeeCCCCeEEEeecCCCeEEEEEee---CceEEEE---eccCceeEEEEe-CCEEEEEEec
Q 015220 182 AGFALFESESLK--WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYS---ISDKNVQEIKIS-PGIMLLIFTK 252 (411)
Q Consensus 182 ~~~~LF~~~~l~--~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~---~Ys~iys---Ls~~~VqeIkIS-dG~~Lai~q~ 252 (411)
..-|.|+...+. .+-|.==+.-+.++++ ++++.+|.=++. +|+.|-. +..++|..+.+| +|-+||+...
T Consensus 8 ~~~pif~~~~~~~~s~R~~~~~~n~t~i~~--a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~ 85 (452)
T 3pbp_A 8 SALPIFQASLSASQSPRYIFSSQNGTRIVF--IQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND 85 (452)
T ss_dssp CCCTTTCC------CCEEEEEETTTTEEEE--EETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS
T ss_pred eeeeecccccccCCCCcEEEEEcCCCEEEE--EECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC
Confidence 345788865554 5666644555666666 667889987776 4665533 445588889999 9999999832
Q ss_pred CCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEccc------ceEEEeeccccCCCceE
Q 015220 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN------FELTEVSRTEFMTPSAF 326 (411)
Q Consensus 253 t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t------~e~~~v~~T~f~hpsAf 326 (411)
--+.|..|..|..... + +.+ +..-+.+-|++.. ..+.+ -+| ||-+.
T Consensus 86 ----~~V~Vv~LP~~~~~~~---------~--------~~~---~~~~q~~ty~l~~~~~~~~s~I~q---VlW-HPl~~ 137 (452)
T 3pbp_A 86 ----NEIFVMEVPWGYSNVE---------D--------VSI---QDAFQIFHYSIDEEEVGPKSSIKK---VLF-HPKSY 137 (452)
T ss_dssp ----SEEEEEECCTTCSCCC---------C--------HHH---HHTTEEEEEEGGGCC--CCCCEEE---EEE-CTTBG
T ss_pred ----CeEEEEEecCccccCc---------c--------ccc---ccccceeEEEcCCcccCCCCceeE---EEe-ccccC
Confidence 2566777775532221 0 000 0111234555543 22333 566 88765
Q ss_pred EEEeeceeEEEEecCeEEEEecC
Q 015220 327 IFLYENQLFLTFRNRTVAVWNFR 349 (411)
Q Consensus 327 ifLy~sqlFlSfsd~tI~iWn~~ 349 (411)
. .+.|.+--+|++|++||+.
T Consensus 138 ~---ds~LVVLtsD~~Ir~yDl~ 157 (452)
T 3pbp_A 138 R---DSCIVVLKEDDTITMFDIL 157 (452)
T ss_dssp G---GCEEEEEETTSCEEEEETT
T ss_pred C---CCeEEEEecCCEEEEEEcc
Confidence 3 4455555599999999998
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=82.03 E-value=28 Score=31.24 Aligned_cols=194 Identities=6% Similarity=-0.081 Sum_probs=103.6
Q ss_pred CCeEEEeecC----CCeEEEEEeeCce--EEEEeccC-ceeEEEEeCCEEEEEEecC------CCceeeEEEEecCCcEE
Q 015220 204 NGKVLTYSAQ----DSIYKVFDLKNYT--MLYSISDK-NVQEIKISPGIMLLIFTKA------SGHVPLKILSIEDGTVL 270 (411)
Q Consensus 204 NGkiLt~~~~----ds~ykVWdL~~Ys--~iysLs~~-~VqeIkISdG~~Lai~q~t------~~~ipiKIl~I~tG~~L 270 (411)
++++++.++. -+.+.+||..+.+ .+-.+... .-..+.+.++.++++.-.. ....-+-++|+.+.+-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 4455555542 2345666666544 22222222 1223334477776665431 12234677888887643
Q ss_pred eEeeeccccCCcceeeeeecceeEEeec------CceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-e----
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQE------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-R---- 339 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQe------~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-s---- 339 (411)
.-. .++....-..+...++++++--+ -..+-+||+.+++-.+++.........-.++..+++|+.+ .
T Consensus 104 ~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 181 (308)
T 1zgk_A 104 PCA--PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN 181 (308)
T ss_dssp ECC--CCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred ECC--CCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCC
Confidence 321 12222233445667888877633 3578899999998888643221111112233456888877 3
Q ss_pred -cCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 340 -NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 340 -d~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.+.+.++|+..+--+.+.. +. .+-+.-..+.+ ++.+++-|..+.. .....+-++|+.|++
T Consensus 182 ~~~~~~~yd~~~~~W~~~~~-~p-~~r~~~~~~~~--~~~iyv~GG~~~~-----~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 182 RLNSAECYYPERNEWRMITA-MN-TIRSGAGVCVL--HNCIYAAGGYDGQ-----DQLNSVERYDVETET 242 (308)
T ss_dssp BCCCEEEEETTTTEEEECCC-CS-SCCBSCEEEEE--TTEEEEECCBCSS-----SBCCCEEEEETTTTE
T ss_pred cCceEEEEeCCCCeEeeCCC-CC-CccccceEEEE--CCEEEEEeCCCCC-----CccceEEEEeCCCCc
Confidence 3578899988553333321 11 12222222333 7778777765531 123578888888765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=81.32 E-value=30 Score=31.10 Aligned_cols=184 Identities=14% Similarity=0.089 Sum_probs=97.4
Q ss_pred CCCeEEeeCCCCeEEEeecCCCe--EEEEEeeCceE--EEEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCc
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSI--YKVFDLKNYTM--LYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~--ykVWdL~~Ys~--iysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~ 268 (411)
+|.-+-|| ++|++++.....+. +-.+|..+.+. +..+.+. .-..+.+.++-++.+.+..+.. |-.++..+|+
T Consensus 73 ~p~gia~~-~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~--i~~~d~~~~~ 149 (306)
T 2p4o_A 73 KVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGA--IWLIDVVQPS 149 (306)
T ss_dssp EEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTE--EEEEETTTTE
T ss_pred CceeEEEc-CCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCe--EEEEeCCCCc
Confidence 46677776 45777776644333 33345555443 3333322 1223334544455555544442 3345555442
Q ss_pred --EEeEeee-----ccccCCcceeeeeecceeEEee-cCceeeEEEccc-ceE--EEeeccccCCCceEEEEeeceeEEE
Q 015220 269 --VLKSFNH-----LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-FEL--TEVSRTEFMTPSAFIFLYENQLFLT 337 (411)
Q Consensus 269 --~L~t~~~-----LL~h~K~I~FLE~~~ekllIKQ-e~~~LkI~dL~t-~e~--~~v~~T~f~hpsAfifLy~sqlFlS 337 (411)
+...... ..+.-...+-|-..+..+++.. .++.|..+|+.. ++. .++- ..+..|..+.+=..-++|++
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~~~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEE
T ss_pred EeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-eccCCCCCeEECCCCCEEEE
Confidence 2211000 0111112233422233576665 567899999875 332 1111 11356777655545578888
Q ss_pred E-ecCeEEEEecCCceee--eeccccccCCCCccceEEEc---CCCCEEEEEecC
Q 015220 338 F-RNRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYIT---SDQDLIISYCKA 386 (411)
Q Consensus 338 f-sd~tI~iWn~~Gel~~--s~e~H~~~~~~c~~n~i~Is---~Dqd~iiS~~~d 386 (411)
- .++.|.+++..|++.+ ....... ....++++ +|++.|+-.+..
T Consensus 229 ~~~~~~V~~~~~~G~~~~~~~~~~~~~-----~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 229 THIYNSVVRIAPDRSTTIIAQAEQGVI-----GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CBTTCCEEEECTTCCEEEEECGGGTCT-----TEEEEEECCSTTTTTEEEEEECT
T ss_pred eCCCCeEEEECCCCCEEEEeecccccC-----CceEEEEecccCCCCEEEEECCC
Confidence 7 5789999999998744 3433222 56788998 897766665554
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.83 E-value=17 Score=39.78 Aligned_cols=40 Identities=13% Similarity=0.325 Sum_probs=28.7
Q ss_pred cccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeeeec
Q 015220 318 TEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFE 357 (411)
Q Consensus 318 T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e 357 (411)
+....|.+.+.++.. ..++|+ .|+++|+||+. |.++.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 230 ADYRSPNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp SSCCCTTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCCCCcceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 444456666666554 345677 99999999999 99888643
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.81 E-value=33 Score=31.24 Aligned_cols=141 Identities=6% Similarity=-0.018 Sum_probs=78.4
Q ss_pred eeeEEEEecCCcEEeEeeeccccCCcc-eeeeeecceeEEeec-------CceeeEEEc--ccceEEEeeccccCCC--c
Q 015220 257 VPLKILSIEDGTVLKSFNHLLHRNKKV-DFIEQFNEKLLVKQE-------NENLQILDV--RNFELTEVSRTEFMTP--S 324 (411)
Q Consensus 257 ipiKIl~I~tG~~L~t~~~LL~h~K~I-~FLE~~~ekllIKQe-------~~~LkI~dL--~t~e~~~v~~T~f~hp--s 324 (411)
--+-++|+.+.+=..-- -++....- ..+...+++++|--+ ...+.+||+ .+.+-.+++......+ .
T Consensus 168 ~~v~~yd~~~~~W~~~~--~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAG--ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEE--ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECC--CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 45777888877644321 22222222 456777888887643 456788988 7777777654421111 1
Q ss_pred eEEEEeeceeEEEE-ec----------------------CeEEEEecCCc---eeeeeccccccCCCCccceEEEcCCCC
Q 015220 325 AFIFLYENQLFLTF-RN----------------------RTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQD 378 (411)
Q Consensus 325 AfifLy~sqlFlSf-sd----------------------~tI~iWn~~Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd 378 (411)
+-.++...++|+.+ .+ ..+.+||+..+ .+..+... -+. ..++.-++.
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~--~~~~~~~~~ 318 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG-----RAY--GVSLPWNNS 318 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC-----CBS--SEEEEETTE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC-----ccc--ceeEEeCCE
Confidence 22455566888887 32 36889998844 22233222 222 333445788
Q ss_pred EEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 379 LIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 379 ~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++|-|..+... .....+-+.++.++|.+
T Consensus 319 i~v~GG~~~~~----~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 319 LLIIGGETAGG----KAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EEEEEEECGGG----CEEEEEEEEEC-CCSCE
T ss_pred EEEEeeeCCCC----CEeeeEEEEEEcCcEeE
Confidence 88888866411 11246666699998864
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=80.48 E-value=52 Score=37.05 Aligned_cols=132 Identities=15% Similarity=0.189 Sum_probs=82.0
Q ss_pred EEEEEeeCceEEEEeccCceeEEEEe----CCEEEEEEecCCCce------eeEEEEecCCcEEeEeeeccccCCcceee
Q 015220 217 YKVFDLKNYTMLYSISDKNVQEIKIS----PGIMLLIFTKASGHV------PLKILSIEDGTVLKSFNHLLHRNKKVDFI 286 (411)
Q Consensus 217 ykVWdL~~Ys~iysLs~~~VqeIkIS----dG~~Lai~q~t~~~i------piKIl~I~tG~~L~t~~~LL~h~K~I~FL 286 (411)
|=|-.+.+.+.++++++++|.|+..+ +..=|+..+-.++.+ -|.+++...++.+.+.. -+..++|-.-
T Consensus 442 yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~--~p~~~~I~~A 519 (1158)
T 3ei3_A 442 TLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWK--EPQAKNISVA 519 (1158)
T ss_dssp EEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEEC--CTTCCCCCEE
T ss_pred EEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEE--CCCCCEEEEE
Confidence 44444445578888888888888655 444455554332211 24555555555554422 2334566655
Q ss_pred eeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---------eeEEEE--ecCeEEEEecC-Ccee
Q 015220 287 EQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---------QLFLTF--RNRTVAVWNFR-GELV 353 (411)
Q Consensus 287 E~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---------qlFlSf--sd~tI~iWn~~-Gel~ 353 (411)
...+..++++. +..|..+.+..+++.++.+..+ +..+.|++.. ..++.+ .|++++|.++. .+.+
T Consensus 520 s~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l--~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 520 SCNSSQVVVAV-GRALYYLQIHPQELRQISHTEM--EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp EECSSEEEEEE-TTEEEEEEEETTEEEEEEEEEC--SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred EeCCCEEEEEE-CCEEEEEEeeCCceeeecccCC--CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence 55566667775 6677788888888777655443 6678998864 345555 38899999998 4444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 411 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.86 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.85 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.85 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.83 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.83 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.83 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.82 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.82 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.82 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.81 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.8 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.78 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.78 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.78 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.78 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.77 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.76 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.74 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.73 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.71 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.66 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.64 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.62 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.61 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.59 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.53 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.53 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.49 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.48 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.47 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.39 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.33 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.3 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.28 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.23 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.21 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.21 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.2 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.19 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.07 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.04 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.03 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.91 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.73 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.29 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.13 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.09 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.94 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.68 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 97.51 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.18 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.03 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.84 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.6 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.53 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.31 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.71 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.34 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.9 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 94.9 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 94.77 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.43 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 93.85 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 93.37 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 92.7 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 92.6 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.01 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 90.14 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 87.68 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 85.53 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 84.41 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 83.37 | |
| d1suua_ | 304 | DNA gyrase A C-terminal domain {Lyme disease spiro | 81.18 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=6.7e-21 Score=159.35 Aligned_cols=269 Identities=10% Similarity=0.136 Sum_probs=200.5
Q ss_pred ccceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 95 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
+.+|..|.+. .++++.-..-|....||..|++.+..+.. +..-|.++-++.....+.+.+ .+ ..+....
T Consensus 17 ~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~----~~-~~~~~~~--- 87 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS----AD-MTIKLWD--- 87 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE----TT-SCCCEEE---
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeecccccccccc----cc-ccccccc---
Confidence 4567776665 45777767779999999999999998874 455678998888666555422 11 1111111
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEE
Q 015220 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLI 249 (411)
Q Consensus 173 ~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai 249 (411)
....+. ......-..+-..-.-.+++..++....|+.+++||+++.+.+.++..+ .+..+..+ +|.+|++
T Consensus 88 --~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 88 --FQGFEC-----IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp --TTSSCE-----EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred --cccccc-----ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEE
Confidence 111110 0000000111111222457788888999999999999999999988855 78888888 7888877
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce----------------------eEEeecCceeeEEEc
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK----------------------LLVKQENENLQILDV 307 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek----------------------llIKQe~~~LkI~dL 307 (411)
.... -.+++|++.+++.+.. +-+|...+..+...++. +.....+..|++||+
T Consensus 161 ~~~d---~~v~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 234 (317)
T d1vyhc1 161 CSND---QTVRVWVVATKECKAE---LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234 (317)
T ss_dssp EETT---SCEEEEETTTCCEEEE---ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred EeCC---CeEEEEeeccceeeEE---EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEEC
Confidence 6543 3489999999999998 55778888877766543 455678899999999
Q ss_pred ccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEE
Q 015220 308 RNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 308 ~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
.+++... +..+|...+..++.+ ++++++ .|++|+|||++ |+++.+|.+|.. .++.+..+||+++|+|
T Consensus 235 ~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-----~V~~~~~s~~~~~l~s 306 (317)
T d1vyhc1 235 STGMCLM---TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-----FVTSLDFHKTAPYVVT 306 (317)
T ss_dssp TTTEEEE---EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-----CEEEEEECSSSSCEEE
T ss_pred CCCcEEE---EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEE
Confidence 9999887 777899998888765 678887 78999999998 999999999988 8999999999999999
Q ss_pred EecCCCCCccccCCceEEEee
Q 015220 383 YCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 383 ~~~d~~~~~~~~~~gtI~i~~ 403 (411)
|+.|. +|+|||
T Consensus 307 ~s~Dg----------~i~iWd 317 (317)
T d1vyhc1 307 GSVDQ----------TVKVWE 317 (317)
T ss_dssp EETTS----------EEEEEC
T ss_pred EeCCC----------eEEEeC
Confidence 99997 999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=9.6e-19 Score=148.23 Aligned_cols=281 Identities=15% Similarity=0.186 Sum_probs=199.4
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh-----------
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE----------- 173 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~----------- 173 (411)
.++|+.-..-|....||..|++.+..+.. +..-|.++-++. +.|++.| .|. .++.......
T Consensus 27 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~~--~~l~s~s---~D~--~~~~~~~~~~~~~~~~~~~~~ 98 (342)
T d2ovrb2 27 GNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRD--NIIISGS---TDR--TLKVWNAETGECIHTLYGHTS 98 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEET--TEEEEEE---TTS--CEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeCC--Cccccce---ecc--cccccccccccceecccccce
Confidence 35555556678899999999999998865 455678888875 3444433 222 1111111100
Q ss_pred ----------hhhhCCCCCCCccee-------ecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCce
Q 015220 174 ----------YIRRGKPDAGFALFE-------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNV 236 (411)
Q Consensus 174 ----------~i~~gk~~~~~~LF~-------~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~V 236 (411)
.+..+..+..-.++. ......+........++..++....++.+++||++..+.+.++.++..
T Consensus 99 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 178 (342)
T d2ovrb2 99 TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178 (342)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS
T ss_pred eEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccc
Confidence 000000000000000 011122333344455566677778899999999999999999998877
Q ss_pred eEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEe
Q 015220 237 QEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV 315 (411)
Q Consensus 237 qeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v 315 (411)
....++ +|.+|++..... .|+||++++++++++ +.+|...+..+...++.++....+..|++||+.+.+....
T Consensus 179 ~~~~~~~~~~~l~s~~~dg---~i~~~d~~~~~~~~~---~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~ 252 (342)
T d2ovrb2 179 RVYSLQFDGIHVVSGSLDT---SIRVWDVETGNCIHT---LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT 252 (342)
T ss_dssp CEEEEEECSSEEEEEETTS---CEEEEETTTCCEEEE---ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ccccccCCCCEEEEEeCCC---eEEEeecccceeeeE---ecccccceeEEecCCCEEEEEcCCCEEEEEeccccccccc
Confidence 777777 788777765543 489999999999998 6688999999999999889999999999999999998886
Q ss_pred eccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcc
Q 015220 316 SRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (411)
Q Consensus 316 ~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~ 392 (411)
......|.....++..+ ++++++ .|++|+|||++ |+++++|..+..-.....++.+..+||+.++++|+.|.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~-- 330 (342)
T d2ovrb2 253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE-- 330 (342)
T ss_dssp ECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC--
T ss_pred ccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCe--
Confidence 66777788899888877 677787 78999999998 99999885322211122799999999999999999885222
Q ss_pred ccCCceEEEeeec
Q 015220 393 AEGNGKLFVSLLM 405 (411)
Q Consensus 393 ~~~~gtI~i~~i~ 405 (411)
..|.+||+.
T Consensus 331 ----~~l~~~Df~ 339 (342)
T d2ovrb2 331 ----TKLLVLDFD 339 (342)
T ss_dssp ----CEEEEEECC
T ss_pred ----eEEEEEeCC
Confidence 479999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=9.7e-20 Score=152.21 Aligned_cols=191 Identities=16% Similarity=0.232 Sum_probs=156.8
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCC--------------------
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKAS-------------------- 254 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~-------------------- 254 (411)
+.|. ++|..|++++.|+++||||+.+.+++.+++.+ .|..+..+ +|.+++......
T Consensus 23 l~~s-p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (317)
T d1vyhc1 23 VIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD 101 (317)
T ss_dssp EEEC-SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred EEEc-CCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccccccc
Confidence 4565 47888999999999999999999999999854 89999998 777666543322
Q ss_pred -------------------CceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEE
Q 015220 255 -------------------GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELT 313 (411)
Q Consensus 255 -------------------~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~ 313 (411)
.--.+++|++++|+.+.+ +-+|...+..++..+++.++. ..+..+++||+.+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~ 178 (317)
T d1vyhc1 102 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT---FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178 (317)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE---EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred ccceeeeccCCCceEEeeccCcceeEeecccceeeeE---EccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceee
Confidence 012478999999999998 568889999999988776555 57889999999999887
Q ss_pred EeeccccCCCceEEEEeec-----------------------eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCcc
Q 015220 314 EVSRTEFMTPSAFIFLYEN-----------------------QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNT 368 (411)
Q Consensus 314 ~v~~T~f~hpsAfifLy~s-----------------------qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~ 368 (411)
. +.-.|...+..+..+ ..++++ .|++|++|+++ |.++.++.+|.. .+
T Consensus 179 ~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~-----~v 250 (317)
T d1vyhc1 179 A---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-----WV 250 (317)
T ss_dssp E---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CE
T ss_pred E---EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC-----CE
Confidence 7 555566666655432 356666 88999999999 999999999988 89
Q ss_pred ceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 369 NNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 369 n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..+..+|||++|++|+.|. +|+|||+.+|+++
T Consensus 251 ~~~~~~~~~~~l~s~~~dg----------~i~iwd~~~~~~~ 282 (317)
T d1vyhc1 251 RGVLFHSGGKFILSCADDK----------TLRVWDYKNKRCM 282 (317)
T ss_dssp EEEEECSSSSCEEEEETTT----------EEEEECCTTSCCC
T ss_pred EEEEECCCCCEEEEEECCC----------eEEEEECCCCcEE
Confidence 9999999999999999886 9999999999875
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.85 E-value=7e-20 Score=165.76 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=157.0
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEE--EEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
++| -+||+.|+.+..|++++|||+.+.+.+ .++. ...|..++.+ +|.+|++.... ....++||++++++..++
T Consensus 64 ~~~-sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~-~~~~~~v~~~~~~~~~~~ 141 (311)
T d1nr0a1 64 AKT-SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG-RERFGHVFLFDTGTSNGN 141 (311)
T ss_dssp EEE-CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC-SSCSEEEEETTTCCBCBC
T ss_pred EEE-eCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc-cccccccccccccccccc
Confidence 446 468999999999999999999997754 3354 3489999999 78877776432 234589999999999998
Q ss_pred eeeccccCCcceeeeeeccee--EE-eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKL--LV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAV 345 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekl--lI-KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~i 345 (411)
+-+|..+|..+..++++- ++ ...+..|++||+.+++... +.-.|...+..+..+ ++++++ .|++|.+
T Consensus 142 ---l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~---~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~ 215 (311)
T d1nr0a1 142 ---LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 215 (311)
T ss_dssp ---CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ---ccccccccccccccccceeeeccccccccccccccccccccc---ccccccccccccccCccccccccccccccccc
Confidence 678999999999887653 33 4577899999999999887 666788888888875 777777 7899999
Q ss_pred EecC-CceeeeeccccccC--CCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 346 WNFR-GELVTSFEDHLLWH--PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 346 Wn~~-Gel~~s~e~H~~~~--~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
||++ |+.+..|+...... -.-.++.+..+|||++|++||.|. +|+|||+.||+|+
T Consensus 216 ~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg----------~v~iwd~~t~~~~ 273 (311)
T d1nr0a1 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK----------TIKIWNVATLKVE 273 (311)
T ss_dssp EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS----------EEEEEETTTTEEE
T ss_pred cccccccccccccccccccccccccccccccCCCCCEEEEEeCCC----------eEEEEECCCCcEE
Confidence 9999 88888876432211 112688999999999999999997 9999999999986
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.9e-17 Score=146.62 Aligned_cols=273 Identities=13% Similarity=0.148 Sum_probs=186.6
Q ss_pred cceEEEeeccc--eehhhhccccceeeecccccEEEEEeC-----------------CCCceEEEEEeecCCCeEEEEEe
Q 015220 96 SKIIEIVAARD--IVFALAQSGVCAAFCRETNQRICFLNV-----------------TADEVIRSLFYNKNNDSLITVSV 156 (411)
Q Consensus 96 S~V~EIv~a~d--ii~~L~~sG~c~af~~~t~~~ic~lN~-----------------s~~evIrsifyN~~n~slI~vSv 156 (411)
+.|.-+-+..| +++. ...|....||..+++.+..+.. ..+..|++|=++.+...|++.|
T Consensus 63 ~~V~~l~fs~dg~~las-g~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~- 140 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA- 140 (388)
T ss_dssp SCCCEEEECTTSSEEEE-ECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE-
T ss_pred CcEEEEEECCCCCEEEE-EeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc-
Confidence 34444444422 4443 4467888999999998877653 3455689999998776665533
Q ss_pred EecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe---EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc
Q 015220 157 YASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD 233 (411)
Q Consensus 157 ~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf---vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~ 233 (411)
.|. .++. . +...++ .+... ..|.+. +.|. +++..++....++.+++||+++...+.....
T Consensus 141 --~dg--~v~i--~---~~~~~~-----~~~~~--~~h~~~v~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 203 (388)
T d1erja_ 141 --EDR--LIRI--W---DIENRK-----IVMIL--QGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203 (388)
T ss_dssp --TTS--CEEE--E---ETTTTE-----EEEEE--CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred --ccc--cccc--c---cccccc-----ccccc--ccccccccccccc-cccccccccccceeeeeeecccccccccccc
Confidence 232 1221 1 122211 11111 112222 2343 5677788888999999999999998877665
Q ss_pred C-ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEee----eccccCCcceeeeeecceeEE--eecCceeeE
Q 015220 234 K-NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN----HLLHRNKKVDFIEQFNEKLLV--KQENENLQI 304 (411)
Q Consensus 234 ~-~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~----~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI 304 (411)
+ ....+..+ +|.+|++..... -|++|++.+|+.+.++. ...+|..+|..++.++++.++ ...+..|++
T Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~i 280 (388)
T d1erja_ 204 EDGVTTVAVSPGDGKYIAAGSLDR---AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 280 (388)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTS---CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccccccccccCCCCCeEEEEcCCC---eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEE
Confidence 5 44455555 788888766543 38999999999998765 345788899999999876544 457789999
Q ss_pred EEcccceEEE---------eeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccce
Q 015220 305 LDVRNFELTE---------VSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 370 (411)
Q Consensus 305 ~dL~t~e~~~---------v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~ 370 (411)
||+.+++... ...+...|...+..++.+ +.++++ .|++|++||++ |+++.+|.+|.. .+..
T Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~-----~V~~ 355 (388)
T d1erja_ 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-----SVIS 355 (388)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEE
T ss_pred EeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC-----CEEE
Confidence 9999876543 122455677788888765 678888 78999999999 999999999988 6666
Q ss_pred EEE------cCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 371 IYI------TSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 371 i~I------s~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+++ +|||.+|+||+.|. +|+|||++
T Consensus 356 ~~~~~~~~~spd~~~l~s~s~Dg----------~I~iW~~~ 386 (388)
T d1erja_ 356 VAVANGSSLGPEYNVFATGSGDC----------KARIWKYK 386 (388)
T ss_dssp EEECSSCTTCTTCEEEEEEETTS----------EEEEEEEE
T ss_pred EEEecCcccCCCCCEEEEEeCCC----------EEEEEeee
Confidence 654 67999999999997 99999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.6e-18 Score=146.92 Aligned_cols=187 Identities=13% Similarity=0.148 Sum_probs=142.1
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecC----------------------------
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKA---------------------------- 253 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t---------------------------- 253 (411)
+|+.|++++.|+++||||+++.+++.++.++ .|..+.+++..++.-+.-.
T Consensus 26 ~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (342)
T d2ovrb2 26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105 (342)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceecccccceeEeeeec
Confidence 3778999999999999999999999999866 8888888877543221100
Q ss_pred --------CCceeeE----------------------------------------EEEecCCcEEeEeeeccccCCccee
Q 015220 254 --------SGHVPLK----------------------------------------ILSIEDGTVLKSFNHLLHRNKKVDF 285 (411)
Q Consensus 254 --------~~~ipiK----------------------------------------Il~I~tG~~L~t~~~LL~h~K~I~F 285 (411)
..-..+. +|++..++.+.+ +-+|...+..
T Consensus 106 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~~~~ 182 (342)
T d2ovrb2 106 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT---LQGHTNRVYS 182 (342)
T ss_dssp ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEE---ECCCSSCEEE
T ss_pred ccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEE---EcCccccccc
Confidence 0011234 444444444444 4456666666
Q ss_pred eeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-Cceeeeecccccc
Q 015220 286 IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLW 362 (411)
Q Consensus 286 LE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~ 362 (411)
+...+..++....+..|++||+.+++... +...|...+.++..+ ++++++ .|++|++|+++ ++....+.+|..
T Consensus 183 ~~~~~~~l~s~~~dg~i~~~d~~~~~~~~---~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~- 258 (342)
T d2ovrb2 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK- 258 (342)
T ss_dssp EEECSSEEEEEETTSCEEEEETTTCCEEE---EECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTS-
T ss_pred ccCCCCEEEEEeCCCeEEEeecccceeee---EecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccce-
Confidence 66666677788899999999999999887 777888888888766 777887 88999999999 788888887765
Q ss_pred CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-......++.+++++++|+.|. +|+|||+.||+++
T Consensus 259 ---~~~~~~~~~~~~~~~~s~s~Dg----------~i~iwd~~tg~~i 293 (342)
T d2ovrb2 259 ---HQSAVTCLQFNKNFVITSSDDG----------TVKLWDLKTGEFI 293 (342)
T ss_dssp ---CSSCEEEEEECSSEEEEEETTS----------EEEEEETTTCCEE
T ss_pred ---eeeceeecccCCCeeEEEcCCC----------EEEEEECCCCCEE
Confidence 1334456788899999999886 9999999999985
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=7.3e-18 Score=150.64 Aligned_cols=244 Identities=12% Similarity=0.104 Sum_probs=179.5
Q ss_pred ccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe---EEee
Q 015220 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF---VEFD 201 (411)
Q Consensus 125 ~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf---vEFD 201 (411)
.+.+-.| ++.+.|.++=++....-|++ .+|+ +++.- ++..+. ...++.......|.+. +.|.
T Consensus 42 ~~~~~~~--~H~~~V~~v~fs~~g~~lat----g~dg--~V~iW-----d~~~~~--~~~~~~~~~~~~h~~~I~~v~~s 106 (337)
T d1gxra_ 42 ARQINTL--NHGEVVCAVTISNPTRHVYT----GGKG--CVKVW-----DISHPG--NKSPVSQLDCLNRDNYIRSCKLL 106 (337)
T ss_dssp EEEEEEE--CCSSCCCEEEECSSSSEEEE----ECBS--EEEEE-----ETTSTT--CCSCSEEEECSCTTSBEEEEEEC
T ss_pred ceEEEEC--CCCCcEEEEEECCCCCEEEE----EECC--EEEEE-----EccCCc--ccceeEEeeecCCCCcEEEEEEc
Confidence 3444444 56667777777776655554 2355 23332 222221 1223434444556665 4674
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
+||+.|+..+.|++++|||+...+ ...++..+ .|..+.++ ++.++++.... -.+++|+++++++... .
T Consensus 107 -~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~~~~~~~~~~~~~---~ 179 (337)
T d1gxra_ 107 -PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD---GNIAVWDLHNQTLVRQ---F 179 (337)
T ss_dssp -TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT---SCEEEEETTTTEEEEE---E
T ss_pred -CCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccc---c
Confidence 689999999999999999998654 56666654 78888899 77777765433 3589999999999887 6
Q ss_pred cccCCcceeeeeecce--eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-
Q 015220 277 LHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~- 349 (411)
.+|..+|..++.++++ ++....+..+++||+.+++... .+.|+..+..++.+ +.++++ .|+.|.+|+++
T Consensus 180 ~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~----~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~ 255 (337)
T d1gxra_ 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ----QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred cccccccccccccccccccccccccccccccccccceeec----ccccccceEEEEEcccccccceeccccccccccccc
Confidence 6899999999987664 5667788999999999999875 34577888777754 667776 88999999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++. ....|.. .++.+.++|||++|+|+|.|. +|+|||+.+|+++
T Consensus 256 ~~~~-~~~~~~~-----~i~~v~~s~~g~~l~s~s~Dg----------~i~iwd~~~~~~~ 300 (337)
T d1gxra_ 256 PDKY-QLHLHES-----CVLSLKFAYCGKWFVSTGKDN----------LLNAWRTPYGASI 300 (337)
T ss_dssp SCEE-EECCCSS-----CEEEEEECTTSSEEEEEETTS----------EEEEEETTTCCEE
T ss_pred cccc-ccccccc-----ccceEEECCCCCEEEEEeCCC----------eEEEEECCCCCEE
Confidence 5554 5667766 789999999999999999987 9999999999875
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.82 E-value=4.3e-17 Score=139.34 Aligned_cols=274 Identities=10% Similarity=0.075 Sum_probs=190.9
Q ss_pred ccceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 95 RS~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
..+|..+-+. ..+++.-...|....||..+++.+..+.. +..-|.++-++..+.-+++.| .|. .+ +...
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~---~d~--~i--~~~~- 125 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG---LDN--IC--SIYN- 125 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSEEEEEE---TTC--CE--EEEE-
T ss_pred CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccceeeeeec---ccc--ee--eccc-
Confidence 3456666554 34677667789999999999999988875 455678998888776665533 222 11 1111
Q ss_pred hhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEE
Q 015220 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLI 249 (411)
Q Consensus 173 ~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai 249 (411)
...... ......+-..-... ..-....++..+.....+.+.+.|+..+......... ..+..+... ++.+++.
T Consensus 126 --~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 126 --LKTREG-NVRVSRELAGHTGY-LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp --SSSSCS-CCCEEEEECCCSSC-EEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred --cccccc-ccccceeccccccc-ccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 111110 01111110001111 1122233445667778889999999988776654443 367777777 5555554
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeE--EeecCceeeEEEcccceEEEeeccccCCCceEE
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL--VKQENENLQILDVRNFELTEVSRTEFMTPSAFI 327 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekll--IKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfi 327 (411)
.... -.+++|++++|+++.+ +-+|+.+|..+..++++.+ ....+..+++||+.+.+..... +...++..+.
T Consensus 202 ~~~d---~~v~i~d~~~~~~~~~---~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~-~~~~~~~~i~ 274 (340)
T d1tbga_ 202 GACD---ASAKLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGIT 274 (340)
T ss_dssp EETT---TEEEEEETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEE
T ss_pred eecC---ceEEEEECCCCcEEEE---EeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc-ccccccCceE
Confidence 4333 3589999999999999 5689999999999877654 4457889999999998877622 3345666677
Q ss_pred EEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 328 FLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 328 fLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
.+..+ ++++++ .|++|++||+. |+++.+|.+|.. .++.+.++|||.+|+|||.|. +|+||
T Consensus 275 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~-----~V~~l~~s~d~~~l~s~s~Dg----------~v~iW 339 (340)
T d1tbga_ 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-----RVSCLGVTDDGMAVATGSWDS----------FLKIW 339 (340)
T ss_dssp EEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSCEEEEETTS----------CEEEE
T ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC-----CEEEEEEeCCCCEEEEEccCC----------EEEEe
Confidence 77665 677887 78999999998 999999999988 799999999999999999997 99999
Q ss_pred e
Q 015220 403 L 403 (411)
Q Consensus 403 ~ 403 (411)
|
T Consensus 340 d 340 (340)
T d1tbga_ 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=9.7e-18 Score=149.85 Aligned_cols=266 Identities=15% Similarity=0.154 Sum_probs=191.1
Q ss_pred cceEEEeeccc--eehhhhccccceeeeccccc---EEEEE-eCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEe
Q 015220 96 SKIIEIVAARD--IVFALAQSGVCAAFCRETNQ---RICFL-NVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (411)
Q Consensus 96 S~V~EIv~a~d--ii~~L~~sG~c~af~~~t~~---~ic~l-N~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~ 169 (411)
+.|.-+-+..| +|+.-. -|....||..+++ .+..+ ...++.-|.++-+++..+.|++.| .|. .++.--
T Consensus 52 ~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~---~dg--~i~iwd 125 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG---EAS--TLSIWD 125 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE---SSS--EEEEEE
T ss_pred CcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee---ccc--cccccc
Confidence 34444444432 444433 5777889875543 23333 346778899999999877776543 222 333332
Q ss_pred eehhhhhhCCCCCCCcc-eeecccCCCC--eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-C
Q 015220 170 TRIEYIRRGKPDAGFAL-FESESLKWPG--FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-P 243 (411)
Q Consensus 170 ~~~~~i~~gk~~~~~~L-F~~~~l~~Pg--fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-d 243 (411)
+. . ..+. ........+. .+.| .+++..++....++.+++||+.+.++......+ .|..+.++ +
T Consensus 126 ~~-----~-----~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 194 (337)
T d1gxra_ 126 LA-----A-----PTPRIKAELTSSAPACYALAI-SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194 (337)
T ss_dssp CC-----C-----C--EEEEEEECSSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred cc-----c-----ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 21 0 1111 1111111111 1233 468899999999999999999999998887754 89999998 7
Q ss_pred CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccC
Q 015220 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFM 321 (411)
Q Consensus 244 G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~ 321 (411)
|.++++.... -.+++|++.+|+.++++ .+..+|..++..+++- +....+..+++||+.+++... ...
T Consensus 195 ~~~~~~~~~d---~~v~i~d~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~ 263 (337)
T d1gxra_ 195 GTKLWTGGLD---NTVRSWDLREGRQLQQH----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ----LHL 263 (337)
T ss_dssp SSEEEEEETT---SEEEEEETTTTEEEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE----ECC
T ss_pred cccccccccc---ccccccccccceeeccc----ccccceEEEEEcccccccceecccccccccccccccccc----ccc
Confidence 8888776543 35899999999999874 5678899998876654 556789999999999999874 567
Q ss_pred CCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCC
Q 015220 322 TPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (411)
Q Consensus 322 hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~ 396 (411)
|...+..++.+ +.|+|+ .|++|++||.. |+++.++. |.. .+..+.+||||++|++||.|.
T Consensus 264 ~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~-----~v~~~~~s~d~~~l~t~s~D~--------- 328 (337)
T d1gxra_ 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESS-----SVLSCDISVDDKYIVTGSGDK--------- 328 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS-----CEEEEEECTTSCEEEEEETTS---------
T ss_pred cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCC-----CEEEEEEeCCCCEEEEEeCCC---------
Confidence 88888888876 678888 78999999999 99888765 444 688999999999999999997
Q ss_pred ceEEEeeec
Q 015220 397 GKLFVSLLM 405 (411)
Q Consensus 397 gtI~i~~i~ 405 (411)
+|+||||.
T Consensus 329 -~I~vWdl~ 336 (337)
T d1gxra_ 329 -KATVYEVI 336 (337)
T ss_dssp -CEEEEEEE
T ss_pred -eEEEEEEE
Confidence 99999985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=4.5e-18 Score=144.81 Aligned_cols=262 Identities=13% Similarity=0.111 Sum_probs=173.8
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
.++++.-..-|...+||..+++.++.|.. +..-|.+|-+... +.|++. ..|. .++.-.. .. +.
T Consensus 23 ~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~-~~l~s~---s~D~--~i~iw~~-----~~-----~~ 85 (355)
T d1nexb2 23 DNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHG-GILVSG---STDR--TVRVWDI-----KK-----GC 85 (355)
T ss_dssp TTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETT-TEEEEE---ETTC--CEEEEET-----TT-----TE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCC-CEEEEE---eccc--ccccccc-----cc-----cc
Confidence 45666667789999999999999999974 5566899988763 334332 2332 2222221 11 11
Q ss_pred cceee--cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc-------------------------ee
Q 015220 185 ALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-------------------------VQ 237 (411)
Q Consensus 185 ~LF~~--~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~-------------------------Vq 237 (411)
..... ..-..+...-...++++.++....|+++++||+.+.+.+....... |.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (355)
T d1nexb2 86 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165 (355)
T ss_dssp EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE
T ss_pred cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc
Confidence 11111 1111122333456789999999999999999999877654433221 11
Q ss_pred EEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eEEeecCceeeEEEcccceEEEe
Q 015220 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTEV 315 (411)
Q Consensus 238 eIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v 315 (411)
...- +|.+++..... -.+++|++.+++.+.+ ..++..++..+...+++ +.....+..|++||+.+++...
T Consensus 166 ~~~~-~~~~~~~~~~d---~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~- 237 (355)
T d1nexb2 166 TVSG-HGNIVVSGSYD---NTLIVWDVAQMKCLYI---LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY- 237 (355)
T ss_dssp EEEE-ETTEEEEEETT---SCEEEEETTTTEEEEE---ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE-
T ss_pred cccc-ccceeeeeccc---ceeeeeecccccceee---eeccccccccccccccceeeecccccceEEeeecccccccc-
Confidence 1111 34444443332 3689999999999988 45666777777766554 4667788999999999999988
Q ss_pred eccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcc
Q 015220 316 SRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (411)
Q Consensus 316 ~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~ 392 (411)
++.+|...+.+++.+ +.++++ .|++|++||++ +. ..+..|.. ......+.++|+.+|++|+ |.
T Consensus 238 --~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~----~~~~~~~~~~~~~~l~~g~-d~----- 303 (355)
T d1nexb2 238 --TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS--RKFSYHHT----NLSAITTFYVSDNILVSGS-EN----- 303 (355)
T ss_dssp --EECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCC--EEEEEECT----TCCCCCEEEECSSEEEEEE-TT-----
T ss_pred --ccccccccccccccccceeeeeecccccccccccccc--eecccccC----CceEEEEEcCCCCEEEEEe-CC-----
Confidence 777899998888877 667777 89999999998 54 34555654 1233456789999988876 54
Q ss_pred ccCCceEEEeeecceeee
Q 015220 393 AEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 393 ~~~~gtI~i~~i~tGk~~ 410 (411)
+|+|||+.|||++
T Consensus 304 -----~i~vwd~~tg~~~ 316 (355)
T d1nexb2 304 -----QFNIYNLRSGKLV 316 (355)
T ss_dssp -----EEEEEETTTCCBC
T ss_pred -----EEEEEECCCCCEE
Confidence 9999999999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=5.6e-17 Score=137.97 Aligned_cols=273 Identities=13% Similarity=0.138 Sum_probs=185.3
Q ss_pred cceEEEeec-cceehhhhccccceeeecccccEEEEEeCCCCce-EEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 015220 96 SKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEV-IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (411)
Q Consensus 96 S~V~EIv~a-~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~ev-IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 173 (411)
..|..+-.. ..+++.-..-|....++..+++............ +....+..+...+++.| .+ ..++.-.++-.
T Consensus 54 ~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d-~~i~iw~~~~~ 128 (355)
T d1nexb2 54 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS----RD-NTLHVWKLPKE 128 (355)
T ss_dssp SCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEE----TT-SEEEEEECCC-
T ss_pred CCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeec----CC-CcEEEEEccCC
Confidence 345555444 3455555667888888888887666555544433 33333444333333322 22 22322222111
Q ss_pred hh-h----------hCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEE
Q 015220 174 YI-R----------RGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIK 240 (411)
Q Consensus 174 ~i-~----------~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIk 240 (411)
.. . ......+...+....-.+.+-+....++|..++....|+.+++||+.+.+.+...+.. .+..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 208 (355)
T d1nexb2 129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 208 (355)
T ss_dssp ----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccccc
Confidence 00 0 0001122233344555567777788889999999999999999999999999888755 677777
Q ss_pred Ee-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccc
Q 015220 241 IS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE 319 (411)
Q Consensus 241 IS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~ 319 (411)
.+ ++..+++..... .++||++++|+.+.. +-+|+.+|..+...+..++....+..|++||+.+++...- ..
T Consensus 209 ~~~~~~~~~~~~~d~---~i~i~d~~~~~~~~~---~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~ 280 (355)
T d1nexb2 209 YDHERKRCISASMDT---TIRIWDLENGELMYT---LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS--YH 280 (355)
T ss_dssp EETTTTEEEEEETTS---CEEEEETTTCCEEEE---ECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEE--EE
T ss_pred ccccceeeecccccc---eEEeeeccccccccc---cccccccccccccccceeeeeecccccccccccccceecc--cc
Confidence 77 666666655433 489999999999998 6689999999999999889999999999999999876542 11
Q ss_pred cCCCceEEEEeec-eeEEEEecCeEEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 320 FMTPSAFIFLYEN-QLFLTFRNRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 320 f~hpsAfifLy~s-qlFlSfsd~tI~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
-.+..+..++... +++.+++|++|+|||++ |+++. .+.+|.. .+..+..+|| .++++++.|.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~-----~V~~v~~~~~-~~~~~~s~dg 345 (355)
T d1nexb2 281 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD-----QIWSVNFKGK-TLVAAVEKDG 345 (355)
T ss_dssp CTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCS-----EEEEEEEETT-EEEEEEESSS
T ss_pred cCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCC-----CEEEEEEcCC-eEEEEEECCC
Confidence 2233344444444 67777799999999999 99885 6888987 7889999987 4777788775
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=3e-18 Score=154.22 Aligned_cols=195 Identities=12% Similarity=0.118 Sum_probs=154.4
Q ss_pred eEEee-CCCCeEEEeecCCCeEEEEEeeCceEEEE----------eccCceeEEEEe-CCEEEEEEecCCCceeeEEEEe
Q 015220 197 FVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTMLYS----------ISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 197 fvEFD-d~NGkiLt~~~~ds~ykVWdL~~Ys~iys----------Ls~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I 264 (411)
-|.|- +.||+.|++...|++++|||+.+.+.+.. .....|..+..+ +|..|++... .....+++|+.
T Consensus 68 ~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-~~~~~~~~~~~ 146 (325)
T d1pgua1 68 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE-GRDNFGVFISW 146 (325)
T ss_dssp EEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC-CSSCSEEEEET
T ss_pred EEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec-cccceEEEEee
Confidence 36776 36899999999999999999987553322 223368899999 7777666532 33345899999
Q ss_pred cCCcEEeEeeeccccCCcceeeeeecce---eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEE
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEK---LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLT 337 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlS 337 (411)
.+|+.+.+ +-+|..+|..++.+++. ++...++..+++||+.+++...-..+.-.|...+..++.+ .++++
T Consensus 147 ~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s 223 (325)
T d1pgua1 147 DSGNSLGE---VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 223 (325)
T ss_dssp TTCCEEEE---CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred ccccccee---eeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccc
Confidence 99999999 66899999999988765 2346788999999999988877555666778888888764 67887
Q ss_pred E-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEc---CCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 338 F-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT---SDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 338 f-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is---~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+ .|++|++||.+ |+++.+|.+|... +..+..+ +||.+|+|++.|. +|+|||+.+|+++
T Consensus 224 ~~~d~~i~iwd~~~~~~~~~l~~~~~~-----v~~~~~s~~~~dg~~l~s~s~D~----------~i~iwd~~~~~~~ 286 (325)
T d1pgua1 224 VGSDRKISCFDGKSGEFLKYIEDDQEP-----VQGGIFALSWLDSQKFATVGADA----------TIRVWDVTTSKCV 286 (325)
T ss_dssp EETTCCEEEEETTTCCEEEECCBTTBC-----CCSCEEEEEESSSSEEEEEETTS----------EEEEEETTTTEEE
T ss_pred cccccceeeeeeccccccccccccccc-----cccceeeeeccCCCEEEEEeCCC----------eEEEEECCCCCEE
Confidence 7 89999999998 9999999999883 2222222 7999999999997 9999999999986
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.78 E-value=7.9e-18 Score=152.11 Aligned_cols=192 Identities=11% Similarity=-0.014 Sum_probs=158.6
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
|.-+-++ ++|..|++. .++.+.+||+.+.+....++++ .|..+++| ||.+||+....+ .|+||++++++.+.
T Consensus 20 ~~~~a~~-~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg---~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 20 AVVLGNT-PAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG---NVRIWDTTQTTHIL 94 (311)
T ss_dssp CCCCEEC-TTSSEEEEE-ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEEESSSTTCCE
T ss_pred eEEEEEc-CCCCEEEEE-eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCc---eEeeeeeecccccc
Confidence 4456665 677777776 4667889999999887777654 99999999 899999887755 48999999998765
Q ss_pred EeeeccccCCcceeeeeecceeEEeec----CceeeEEEcccceEEEeeccccCCCceEEEEeec---e-eEEEE-ecCe
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---Q-LFLTF-RNRT 342 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekllIKQe----~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---q-lFlSf-sd~t 342 (411)
... +-+|+.+|..+..++++.++... ...++|||+.+++... ++.+|...+..+..+ + +|+|+ .|++
T Consensus 95 ~~~-~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~---~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~ 170 (311)
T d1nr0a1 95 KTT-IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG---NLTGQARAMNSVDFKPSRPFRIISGSDDNT 170 (311)
T ss_dssp EEE-EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB---CCCCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred ccc-cccccCccccccccccccccccccccccccccccccccccccc---cccccccccccccccccceeeecccccccc
Confidence 433 45788999999999987655443 2448999999998876 888899999888765 3 57888 6899
Q ss_pred EEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 343 I~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|++||++ +++...+++|.. .++.+..+||+++|++++.|. +|.+||+.+|+.+
T Consensus 171 i~i~d~~~~~~~~~~~~~~~-----~i~~v~~~p~~~~l~~~~~d~----------~v~~~d~~~~~~~ 224 (311)
T d1nr0a1 171 VAIFEGPPFKFKSTFGEHTK-----FVHSVRYNPDGSLFASTGGDG----------TIVLYNGVDGTKT 224 (311)
T ss_dssp EEEEETTTBEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS----------CEEEEETTTCCEE
T ss_pred cccccccccccccccccccc-----cccccccCccccccccccccc----------ccccccccccccc
Confidence 9999999 899999999988 899999999999999999987 9999999988653
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.78 E-value=3.9e-17 Score=148.63 Aligned_cols=192 Identities=6% Similarity=0.018 Sum_probs=156.0
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCc--eEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Y--s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
-|+ +||+.|+.++.+++++|||+.+. +++..+.+| .|..+.+| +|.+|++...- --|+||++.+++....+
T Consensus 14 ~~s-~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D---~~i~vWd~~~~~~~~~~ 89 (371)
T d1k8kc_ 14 AWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD---RNAYVWTLKGRTWKPTL 89 (371)
T ss_dssp EEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT---SCEEEEEEETTEEEEEE
T ss_pred EEC-CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC---CeEEEEeeccccccccc
Confidence 343 68999999999999999999865 477888864 79999999 88888877542 25899999999888776
Q ss_pred eeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEE-eeccccCCCceEEEEeec---eeEEEE-ecCeEEEE
Q 015220 274 NHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVW 346 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iW 346 (411)
. +.+|+.+|..++-+++.. ++.+.+..+++|++....... .....-.|...+.+++.+ +.|+++ .|++|++|
T Consensus 90 ~-~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~ 168 (371)
T d1k8kc_ 90 V-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168 (371)
T ss_dssp E-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred c-cccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEE
Confidence 6 468899999999877664 566788999999998865443 333455688888888765 778888 89999999
Q ss_pred ecC-------------------CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 347 NFR-------------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 347 n~~-------------------Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+.. |+++..+.+|.. .++.+..+|||+.|++++.|. +|.+||+.+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~s~~~d~----------~i~iwd~~~~ 233 (371)
T d1k8kc_ 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-----WVHGVCFSANGSRVAWVSHDS----------TVCLADADKK 233 (371)
T ss_dssp ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-----CEEEEEECSSSSEEEEEETTT----------EEEEEEGGGT
T ss_pred eeccCccccccccccccccccceeeeeeccCccC-----cEEEEEeecccccccccccCC----------cceEEeeecc
Confidence 985 346677778877 789999999999999999987 9999999999
Q ss_pred eee
Q 015220 408 TCK 410 (411)
Q Consensus 408 k~~ 410 (411)
+++
T Consensus 234 ~~~ 236 (371)
T d1k8kc_ 234 MAV 236 (371)
T ss_dssp TEE
T ss_pred cce
Confidence 875
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.78 E-value=4.5e-16 Score=134.16 Aligned_cols=273 Identities=11% Similarity=0.078 Sum_probs=187.9
Q ss_pred ceEEEeecc--ceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhh
Q 015220 97 KIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (411)
Q Consensus 97 ~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~ 174 (411)
+|..|-+.. .+++.-..-|....||..+++.+-.+...+...|.++-+++.+. +++++ .|+ .+ +..+..
T Consensus 14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~---~d~--~v--~~~~~~- 84 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVS---WDD--HL--KVVPAG- 84 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEE---TTT--EE--EEECSS-
T ss_pred CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eeccc---cee--eE--EEeccC-
Confidence 444444432 25554456688999999999988777777888999999998764 54433 344 23 222211
Q ss_pred hhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecC
Q 015220 175 IRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKA 253 (411)
Q Consensus 175 i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t 253 (411)
.... ..........-..|--+.|. ++|+.++.. .++.+++|+.. +........++..+.++ +|.+|++....
T Consensus 85 --~~~~-~~~~~~~~~~~~~~~~~~~s-~~g~~~~~~-~~~~i~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 85 --GSGV-DSSKAVANKLSSQPLGLAVS-ADGDIAVAA-CYKHIAIYSHG--KLTEVPISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp --SSSS-CTTSCCEEECSSCEEEEEEC-TTSSCEEEE-ESSEEEEEETT--EEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred --Cccc-cccccccccccccccccccc-ccccccccc-ccccccccccc--ccccccccccccccccccccccccccccc
Confidence 1111 11122222233344456665 467766655 45688999854 34444556788899999 78888876543
Q ss_pred CCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee
Q 015220 254 SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (411)
Q Consensus 254 ~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~ 331 (411)
-.+++|+++++++.... .+.|+.+|..++.++++. +...++..+++||+.++.......+.-+|...+.+++.
T Consensus 158 ---g~i~~~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 158 ---SKVHVYKLSGASVSEVK--TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp ---SEEEEEEEETTEEEEEE--EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred ---ccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36889999999876532 457889999999988765 44557889999999999888766777789999999886
Q ss_pred c---eeEEEE-ecCeEEEEecC-Cce--eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 332 N---QLFLTF-RNRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 332 s---qlFlSf-sd~tI~iWn~~-Gel--~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+ ++++++ .|++|++||++ +.. +.....|.. ..++.+ .++|++.|+|++.|. +|+|||+
T Consensus 233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~-~~~~~~~l~s~s~D~----------~i~iWdl 297 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM----SSVNSV-IWLNETTIVSAGQDS----------NIKFWNV 297 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTT----SCEEEE-EEEETTEEEEEETTS----------CEEEEEC
T ss_pred cccccceEEEcCCCEEEEEECCCCCcceEEEecCCCC----CcEEEE-EECCCCEEEEEeCCC----------EEEEEec
Confidence 6 678888 78999999998 543 333333332 244444 578889999999987 9999998
Q ss_pred c
Q 015220 405 M 405 (411)
Q Consensus 405 ~ 405 (411)
.
T Consensus 298 ~ 298 (299)
T d1nr0a2 298 P 298 (299)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=4.3e-17 Score=144.29 Aligned_cols=191 Identities=15% Similarity=0.204 Sum_probs=144.3
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--------------------ceeEEEEe-CCEEEEEEecCCCc
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--------------------NVQEIKIS-PGIMLLIFTKASGH 256 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--------------------~VqeIkIS-dG~~Lai~q~t~~~ 256 (411)
+.|+ +||+.|+.++ |++++|||+.+.+++.++.++ .|..+.+| ||.+|++.....
T Consensus 68 l~fs-~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg-- 143 (388)
T d1erja_ 68 VKFS-NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR-- 143 (388)
T ss_dssp EEEC-TTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS--
T ss_pred EEEC-CCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccc--
Confidence 5676 5899888765 889999999999999888643 38889999 888888876544
Q ss_pred eeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEe---e
Q 015220 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY---E 331 (411)
Q Consensus 257 ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy---~ 331 (411)
-|++|+..+++.+.. ..+|..+|..+..+++.. +....+..+++||+.+...... ...+........ .
T Consensus 144 -~v~i~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~ 216 (388)
T d1erja_ 144 -LIRIWDIENRKIVMI---LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT---LSIEDGVTTVAVSPGD 216 (388)
T ss_dssp -CEEEEETTTTEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEECSTT
T ss_pred -ccccccccccccccc---cccccccccccccccccccccccccceeeeeeeccccccccc---cccccccccccccCCC
Confidence 489999999999998 678999999999988754 5667889999999999988873 333333332222 2
Q ss_pred ceeEEEE-ecCeEEEEecC-Cceeeeecccccc--CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 332 NQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLW--HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 332 sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~--~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.++++++ .|++|.+|+.+ |..+.+++..... .....++.+..+|||++|++++.|. +|++||+.++
T Consensus 217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~----------~i~iwd~~~~ 286 (388)
T d1erja_ 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR----------SVKLWNLQNA 286 (388)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----------EEEEEEC---
T ss_pred CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC----------cEEEEeccCC
Confidence 2677777 88999999999 8887776533221 1123788999999999999999987 9999999887
Q ss_pred ee
Q 015220 408 TC 409 (411)
Q Consensus 408 k~ 409 (411)
+.
T Consensus 287 ~~ 288 (388)
T d1erja_ 287 NN 288 (388)
T ss_dssp --
T ss_pred cc
Confidence 64
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.77 E-value=1.3e-16 Score=136.36 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=144.0
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe---
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK--- 271 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~--- 271 (411)
+.|. ++|+.|++++.|++++|||+.+.+.+.++..+ .|..+.++ +|.+++...... .+.+|+........
T Consensus 61 l~~s-~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~ 136 (340)
T d1tbga_ 61 MHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN---ICSIYNLKTREGNVRVS 136 (340)
T ss_dssp EEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTC---CEEEEESSSSCSCCCEE
T ss_pred EEEC-CCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccc---eeecccccccccccccc
Confidence 4576 58899999999999999999999999988754 79999999 788777765432 23333332221110
Q ss_pred ---------------------------------------EeeeccccCCcceeeeeecceeE--EeecCceeeEEEcccc
Q 015220 272 ---------------------------------------SFNHLLHRNKKVDFIEQFNEKLL--VKQENENLQILDVRNF 310 (411)
Q Consensus 272 ---------------------------------------t~~~LL~h~K~I~FLE~~~ekll--IKQe~~~LkI~dL~t~ 310 (411)
.......+..++......+...+ ....+..+++||+.++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~ 216 (340)
T d1tbga_ 137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216 (340)
T ss_dssp EEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred eecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCC
Confidence 01123344455555555555543 3456789999999999
Q ss_pred eEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEec
Q 015220 311 ELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (411)
Q Consensus 311 e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~ 385 (411)
+... +.-+|...+.+++.+ ++|+++ .|++|++|+++ +..+.++..+.. ...+..+.++|||.+|++|+.
T Consensus 217 ~~~~---~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~g~~ 290 (340)
T d1tbga_ 217 MCRQ---TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI---ICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp EEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC---CSCEEEEEECSSSCEEEEEET
T ss_pred cEEE---EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccc---cCceEEEEECCCCCEEEEEEC
Confidence 9987 777899988888865 678888 78999999999 777776644332 346889999999999999999
Q ss_pred CCCCCccccCCceEEEeeecceeee
Q 015220 386 ADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 386 d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|. +|+|||+.+|+++
T Consensus 291 dg----------~i~iwd~~~~~~~ 305 (340)
T d1tbga_ 291 DF----------NCNVWDALKADRA 305 (340)
T ss_dssp TS----------CEEEEETTTCCEE
T ss_pred CC----------EEEEEECCCCcEE
Confidence 86 9999999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=8.9e-17 Score=133.03 Aligned_cols=184 Identities=13% Similarity=0.222 Sum_probs=146.9
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
+||+.|++++.|+++||||+++.+++.++..+ .|..+.. ++.+|++.... -.+++|++.+|+.... ...+.
T Consensus 23 ~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~-~~~~l~s~s~D---~~i~~~~~~~~~~~~~---~~~~~ 95 (293)
T d1p22a2 23 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSD---STVRVWDVNTGEMLNT---LIHHC 95 (293)
T ss_dssp CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETT---SCEEEEESSSCCEEEE---ECCCC
T ss_pred EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec-ccceeeccccc---cccccccccccccccc---ccccc
Confidence 35889999999999999999999999999965 7877665 56667665533 3589999999999988 33455
Q ss_pred CcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-Cceeeeec
Q 015220 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELVTSFE 357 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e 357 (411)
............++....+..+.+||+.+........+...|+.++.++... ..+++. .|++|++||.+ ++++.+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~ 175 (293)
T d1p22a2 96 EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 175 (293)
T ss_dssp SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEc
Confidence 5555566667778889999999999999987766666777888888877755 445555 89999999999 99999999
Q ss_pred cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 358 ~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|.. .+ ..++++++.+++++.|. +|.|||+.+++++
T Consensus 176 ~~~~-----~v--~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~ 211 (293)
T d1p22a2 176 GHKR-----GI--ACLQYRDRLVVSGSSDN----------TIRLWDIECGACL 211 (293)
T ss_dssp CCSS-----CE--EEEEEETTEEEEEETTS----------CEEEEETTTCCEE
T ss_pred cccc-----cc--ccccCCCCeEEEecCCC----------EEEEEecccceee
Confidence 8876 33 44566788999999987 8999999888764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=1.3e-16 Score=146.24 Aligned_cols=196 Identities=9% Similarity=0.017 Sum_probs=142.2
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEE--------Eec----cCceeEEEEe------CCEEEEEEecCCCcee
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--------SIS----DKNVQEIKIS------PGIMLLIFTKASGHVP 258 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iy--------sLs----~~~VqeIkIS------dG~~Lai~q~t~~~ip 258 (411)
.+.++..++..+++.+.|+.++||++....... .+. ...+..+..+ .+.+++.... --.
T Consensus 71 ~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~ 147 (393)
T d1sq9a_ 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV---KGT 147 (393)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET---TSC
T ss_pred eeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcC---CCc
Confidence 345566677788889999999999987643221 111 1244455554 1345544432 235
Q ss_pred eEEEEecCCc---------------EEeEeeeccccCCcceeeeeecceeE-EeecCceeeEEEcccceEEE---eeccc
Q 015220 259 LKILSIEDGT---------------VLKSFNHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDVRNFELTE---VSRTE 319 (411)
Q Consensus 259 iKIl~I~tG~---------------~L~t~~~LL~h~K~I~FLE~~~ekll-IKQe~~~LkI~dL~t~e~~~---v~~T~ 319 (411)
+++|++.... ..........+...+..++.++++++ ..+.+..|+|||+.+++... ...++
T Consensus 148 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l 227 (393)
T d1sq9a_ 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSM 227 (393)
T ss_dssp EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccccccc
Confidence 8899986322 22233345566677888999988754 35678899999999988764 34567
Q ss_pred cCCCceEEEEeec---eeEEEE-ecC---eEEEEecC-Cceeeeec-------------cccccCCCCccceEEEcCCCC
Q 015220 320 FMTPSAFIFLYEN---QLFLTF-RNR---TVAVWNFR-GELVTSFE-------------DHLLWHPDCNTNNIYITSDQD 378 (411)
Q Consensus 320 f~hpsAfifLy~s---qlFlSf-sd~---tI~iWn~~-Gel~~s~e-------------~H~~~~~~c~~n~i~Is~Dqd 378 (411)
.+|+.++.+|+.+ ++++++ .|+ .|++||++ |+++.+|. +|.. .++.++++|||+
T Consensus 228 ~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-----~V~~l~fspd~~ 302 (393)
T d1sq9a_ 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-----WVMSLSFNDSGE 302 (393)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-----CEEEEEECSSSS
T ss_pred ccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccC-----ceeeeccCCCCC
Confidence 7899999999986 788888 555 49999999 99998886 7888 699999999999
Q ss_pred EEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 379 LIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 379 ~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|+|+|.|. +|+|||+.||+|+
T Consensus 303 ~l~S~s~D~----------~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 303 TLCSAGWDG----------KLRFWDVKTKERI 324 (393)
T ss_dssp EEEEEETTS----------EEEEEETTTTEEE
T ss_pred eeEEECCCC----------EEEEEECCCCCEE
Confidence 999999997 9999999999986
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.73 E-value=1e-16 Score=138.18 Aligned_cols=190 Identities=12% Similarity=0.144 Sum_probs=137.8
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc---CceeEEEEe-CCEEEEEEecCCCceeeEEEEecC-------
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIED------- 266 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~---~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t------- 266 (411)
+.|. +||+.|++++.|++++|||+++.+++..+.+ ..|..+.++ +|.+++..... -+++|++..
T Consensus 18 l~~s-~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~----~v~~~~~~~~~~~~~~ 92 (299)
T d1nr0a2 18 LSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDD----HLKVVPAGGSGVDSSK 92 (299)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTT----EEEEECSSSSSSCTTS
T ss_pred EEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeeccccee----eEEEeccCCccccccc
Confidence 3454 5899999999999999999999999998863 279999999 78776654321 345555432
Q ss_pred ------------------CcEEeEee------------eccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEE
Q 015220 267 ------------------GTVLKSFN------------HLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTE 314 (411)
Q Consensus 267 ------------------G~~L~t~~------------~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~ 314 (411)
|+.+.... ..+....++..+..+++.. .+..++..|++||+.+++..+
T Consensus 93 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~ 172 (299)
T d1nr0a2 93 AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE 172 (299)
T ss_dssp CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22111000 0111223344556666654 344678999999999998776
Q ss_pred eeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Ccee---eeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 315 VSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELV---TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 315 v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~---~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
+ ....|+..+.++..+ +.++++ .|++|.+||+. +..+ .++.+|.. .++.+..+|||++|++|+.|
T Consensus 173 ~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~s~~~~~l~sgs~d 245 (299)
T d1nr0a2 173 V--KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA-----KVACVSWSPDNVRLATGSLD 245 (299)
T ss_dssp E--EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS-----CEEEEEECTTSSEEEEEETT
T ss_pred c--cccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccceEEEcCC
Confidence 5 334588888888865 566777 88999999998 6544 36677776 78999999999999999998
Q ss_pred CCCCccccCCceEEEeeecceee
Q 015220 387 DSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 387 ~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
. +|+|||+.+++.
T Consensus 246 g----------~i~iwd~~~~~~ 258 (299)
T d1nr0a2 246 N----------SVIVWNMNKPSD 258 (299)
T ss_dssp S----------CEEEEETTCTTS
T ss_pred C----------EEEEEECCCCCc
Confidence 7 999999998764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2e-14 Score=118.77 Aligned_cols=252 Identities=11% Similarity=0.141 Sum_probs=173.7
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
...|+.=..-|....||..+++.+..|..-.+ -|.+|=+|. +.|++. ..|. .++.. ++..+.
T Consensus 25 ~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~-~V~~v~~~~--~~l~s~---s~D~--~i~~~-----~~~~~~----- 86 (293)
T d1p22a2 25 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYDE--RVIITG---SSDS--TVRVW-----DVNTGE----- 86 (293)
T ss_dssp SSEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEEEEECCS--SEEEEE---ETTS--CEEEE-----ESSSCC-----
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEeeeeccc--ceeecc---cccc--ccccc-----cccccc-----
Confidence 34555566779999999999999999975444 467887643 333332 2333 22222 222221
Q ss_pred cceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceE---EEEeccC--ceeEEEEeCCEEEEEEecCCCceee
Q 015220 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDK--NVQEIKISPGIMLLIFTKASGHVPL 259 (411)
Q Consensus 185 ~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~---iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipi 259 (411)
... ......+....+. .....++....++..++||+.+... ...+..+ .|..+...+..++..+. --.+
T Consensus 87 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~----d~~i 160 (293)
T d1p22a2 87 MLN-TLIHHCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG----DRTI 160 (293)
T ss_dssp EEE-EECCCCSCEEEEE-CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET----TSEE
T ss_pred ccc-ccccccccccccc-ccccceeecccccceeEeeccccccccccccccccccccccceecccccccccC----CCce
Confidence 111 1111222222233 3444567778899999999998663 3444433 56666666555443332 2469
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF 338 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf 338 (411)
++|++.+++.+.+ +-++...+..+...+..++....+..|+|||+.+++... +...+...+.++... +.++++
T Consensus 161 ~~~d~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~l~sg 234 (293)
T d1p22a2 161 KVWNTSTCEFVRT---LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFDNKRIVSG 234 (293)
T ss_dssp EEEETTTCCEEEE---EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEECCSSEEEEE
T ss_pred eeecCCCCcEEEE---EcccccccccccCCCCeEEEecCCCEEEEEecccceeee---eecccceeeeeccccceEEEEE
Confidence 9999999999998 558888999998888888888899999999999999988 555666666666555 667777
Q ss_pred -ecCeEEEEecCC----------ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 339 -RNRTVAVWNFRG----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 339 -sd~tI~iWn~~G----------el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.|++|++||+.. .++.++.+|.. .++.+.. |+..|+|+|.|. +|+|||
T Consensus 235 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~-----~V~~v~~--d~~~l~s~s~Dg----------~i~iWD 293 (293)
T d1p22a2 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG-----RVFRLQF--DEFQIVSSSHDD----------TILIWD 293 (293)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-----CCCCEEE--CSSCEEECCSSS----------EEEEEC
T ss_pred cCCCEEEEEECCCCccccccCCceeeEEecCCCC-----CEEEEEE--cCCEEEEEecCC----------EEEEeC
Confidence 899999999762 36788999988 6777665 778899999997 999998
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.66 E-value=1.7e-13 Score=115.93 Aligned_cols=262 Identities=11% Similarity=0.110 Sum_probs=183.8
Q ss_pred hhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee
Q 015220 110 ALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES 189 (411)
Q Consensus 110 ~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~ 189 (411)
+-..+|.-.++|..|++.+-.+..... .+.|-+++...-|.+ +..... +++..+.+ . +..+-.-
T Consensus 7 ~~~~~~~v~v~D~~t~~~~~~i~~g~~--p~~va~spdG~~l~v-~~~~~~-----~i~v~d~~---t-----~~~~~~~ 70 (301)
T d1l0qa2 7 ANSESDNISVIDVTSNKVTATIPVGSN--PMGAVISPDGTKVYV-ANAHSN-----DVSIIDTA---T-----NNVIATV 70 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEEE-EEGGGT-----EEEEEETT---T-----TEEEEEE
T ss_pred EECCCCEEEEEECCCCeEEEEEECCCC--ceEEEEeCCCCEEEE-EECCCC-----EEEEEECC---C-----Cceeeee
Confidence 345678888999999999988876533 688999987666643 332221 23333322 1 1112222
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCC
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG 267 (411)
..-..|.-+.|+......++.+..+..+.+|++.+.+.+..+... ....+.++ ||..+++..... ..+.+|+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~--~~~~~~~~~~~ 148 (301)
T d1l0qa2 71 PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD--KTVSVINTVTK 148 (301)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTT
T ss_pred eccccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccc--cceeeeecccc
Confidence 233457788999888889999999999999999999999999866 77888898 888777765544 35788999999
Q ss_pred cEEeEeeeccccCCcceeeeeecce--eEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEEec---
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFRN--- 340 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSfsd--- 340 (411)
+...++.. ...+..+..+++. +++.. +...+.+|+....+........ ..|....+-. .+.+|++..+
T Consensus 149 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~ 223 (301)
T d1l0qa2 149 AVINTVSV----GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYF 223 (301)
T ss_dssp EEEEEEEC----CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSC
T ss_pred ceeeeccc----CCCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeecccccccccccccccee
Confidence 99998442 2345667777664 45555 4467778888888777632222 1233333322 2266666644
Q ss_pred CeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEE-EEEecCCCCCccccCCceEEEeeecceeee
Q 015220 341 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 341 ~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i-iS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++|.+||+. |+++.++.-+. ....+++||||+.| ++++.+. +|.+||+.|||++
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~------~~~~va~spdg~~l~va~~~~~----------~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGP------DPAGIAVTPDGKKVYVALSFCN----------TVSVIDTATNTIT 279 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCS------SEEEEEECTTSSEEEEEETTTT----------EEEEEETTTTEEE
T ss_pred eeeeeeecCCCeEEEEEcCCC------CEEEEEEeCCCCEEEEEECCCC----------eEEEEECCCCeEE
Confidence 589999999 99998887553 35789999999976 6776665 9999999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.64 E-value=1e-13 Score=125.83 Aligned_cols=177 Identities=11% Similarity=0.025 Sum_probs=139.5
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
+.|. +||+.|+.++.|++++|||+++.+ +...+..+ .|..+..+ +|.+|++..... -++||+++++.....
T Consensus 57 l~fs-p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~---~i~i~~~~~~~~~~~ 132 (371)
T d1k8kc_ 57 VDWA-PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWV 132 (371)
T ss_dssp EEEE-TTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEE
T ss_pred EEEC-CCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccC---cceeeeeeccccccc
Confidence 4665 477888888899999999999766 44555533 79999999 888888876543 378999998877655
Q ss_pred eee-ccccCCcceeeeeecceeEEe--ecCceeeEEEcccce------------------EEEeeccccCCCceEEEEee
Q 015220 273 FNH-LLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFE------------------LTEVSRTEFMTPSAFIFLYE 331 (411)
Q Consensus 273 ~~~-LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e------------------~~~v~~T~f~hpsAfifLy~ 331 (411)
... .-+|+..|..++.++++.++. ..+..+++||+..++ ... +...|+.++..++.
T Consensus 133 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 209 (371)
T d1k8kc_ 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF---ESSSSCGWVHGVCF 209 (371)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE---ECCCCSSCEEEEEE
T ss_pred ccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeee---eccCccCcEEEEEe
Confidence 443 446788999999998876554 578899999987643 233 55678888888876
Q ss_pred c---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 332 N---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 332 s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
+ +.++++ .|++|.+||++ |..+.++..|.. .++.+..+|||++|++|+.+
T Consensus 210 s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~s~~fs~d~~~la~g~d~ 264 (371)
T d1k8kc_ 210 SANGSRVAWVSHDSTVCLADADKKMAVATLASETL-----PLLAVTFITESSLVAAGHDC 264 (371)
T ss_dssp CSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-----CEEEEEEEETTEEEEEETTS
T ss_pred ecccccccccccCCcceEEeeecccceeeeecccc-----cceeeeecCCCCEEEEEcCC
Confidence 5 667777 78999999999 999999999988 78999999999999988733
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=9e-14 Score=124.64 Aligned_cols=188 Identities=14% Similarity=0.117 Sum_probs=139.7
Q ss_pred EEeeCCCCeEEEeec--CCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~--~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
+.|. ++|+.|+..+ .+...++|++.+.+++.++..+ .|..+.++ ++.++++.-.... .+++|++.+++...+
T Consensus 121 v~~s-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~--~v~~~d~~~~~~~~~ 197 (325)
T d1pgua1 121 ISWD-FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG--SVVFYQGPPFKFSAS 197 (325)
T ss_dssp EEEC-TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTT--EEEEEETTTBEEEEE
T ss_pred EEEC-CCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccc--cccccccccccccee
Confidence 4554 4666555443 4778999999999999999854 89999998 4444333332333 478999999999998
Q ss_pred eeeccccCCcceeeeeecc--eeEE-eecCceeeEEEcccceEEEeeccccCCCceEE----EEee--ceeEEEE-ecCe
Q 015220 273 FNHLLHRNKKVDFIEQFNE--KLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFI----FLYE--NQLFLTF-RNRT 342 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~e--kllI-KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfi----fLy~--sqlFlSf-sd~t 342 (411)
..-+-+|...|..++.+++ .+++ ...+..|++||+.+++... ++.+|..++. .++. .+.|+|+ .|++
T Consensus 198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~---~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~ 274 (325)
T d1pgua1 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWLDSQKFATVGADAT 274 (325)
T ss_dssp ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc---cccccccccccceeeeeccCCCEEEEEeCCCe
Confidence 7766788899999998874 3333 5688999999999999887 6666665542 2222 3678888 8999
Q ss_pred EEEEecC-CceeeeeccccccCCCCccceEEEcCC-CCEEEEEecCCCCCccccCCceEEEeee
Q 015220 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 343 I~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
|+|||++ |++++++..|..- .....+.+.++ +..|+|+|.|. +|+||||
T Consensus 275 i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~s~dg----------~i~vwdl 325 (325)
T d1pgua1 275 IRVWDVTTSKCVQKWTLDKQQ---LGNQQVGVVATGNGRIISLSLDG----------TLNFYEL 325 (325)
T ss_dssp EEEEETTTTEEEEEEECCTTC---GGGCEEEEEEEETTEEEEEETTS----------CEEEEET
T ss_pred EEEEECCCCCEEEEEEecCCc---ccCeEEEEEECCCCEEEEEECCC----------EEEEEEC
Confidence 9999999 9999988877651 23455555554 35899999987 9999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=1.4e-14 Score=132.62 Aligned_cols=179 Identities=11% Similarity=0.126 Sum_probs=129.6
Q ss_pred eCCCCeEEEeecCCCeEEEEEeeCce-----------EEEE----ec-----cCceeEEEEeCCEEEEEEecCCCceeeE
Q 015220 201 DDVNGKVLTYSAQDSIYKVFDLKNYT-----------MLYS----IS-----DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (411)
Q Consensus 201 Dd~NGkiLt~~~~ds~ykVWdL~~Ys-----------~iys----Ls-----~~~VqeIkISdG~~Lai~q~t~~~ipiK 260 (411)
+...+..++....|++++|||+.... .... +. ...+..+.+||.-+|++.... -.|+
T Consensus 132 ~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~D---g~i~ 208 (393)
T d1sq9a_ 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNN---GTVQ 208 (393)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTT---SEEE
T ss_pred CcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCC---CcEE
Confidence 34567888999999999999986431 1111 11 114778899944466665432 2389
Q ss_pred EEEecCCcEEeEee---eccccCCcceeeeeecceeEEeecCc-----eeeEEEcccceEEEee----------ccccCC
Q 015220 261 ILSIEDGTVLKSFN---HLLHRNKKVDFIEQFNEKLLVKQENE-----NLQILDVRNFELTEVS----------RTEFMT 322 (411)
Q Consensus 261 Il~I~tG~~L~t~~---~LL~h~K~I~FLE~~~ekllIKQe~~-----~LkI~dL~t~e~~~v~----------~T~f~h 322 (411)
||++++|+++.++. .+.+|+.+|..+..++++.+|..++. .|++||+.+++....- ....+|
T Consensus 209 iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH 288 (393)
T d1sq9a_ 209 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288 (393)
T ss_dssp EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred EEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc
Confidence 99999999998765 46789999999999999887777642 4999999999877621 223579
Q ss_pred CceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEE
Q 015220 323 PSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 323 psAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
..++..|+.+ ++++|+ .|++|+|||.+ |+++.+|++|...- .+....+..+||++.++++
T Consensus 289 ~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v-~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI-EIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC-SSGGGCCCBCTTSCBCSSC
T ss_pred cCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcc-cCCccEEEECCCCCEEEEc
Confidence 9999999976 789999 78999999999 99999999998732 1233456777777766544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=3.1e-13 Score=113.13 Aligned_cols=245 Identities=12% Similarity=0.008 Sum_probs=155.1
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe---EEeeCCCCeEEEe
Q 015220 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTY 210 (411)
Q Consensus 134 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf---vEFDd~NGkiLt~ 210 (411)
.|++-|.+|=|++.++-|++.| .| ..++.-.+. .++. ...+.. .+.|.+- +.|.+.++..|++
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s----~D-g~v~iwd~~-----~~~~--~~~~~~--~~~h~~~V~~v~f~~~~~~~l~s 74 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITS----WD-GSLTVYKFD-----IQAK--NVDLLQ--SLRYKHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEE----TT-SEEEEEEEE-----TTTT--EEEEEE--EEECSSCEEEEEEEESSSEEEEE
T ss_pred CCCCCEEEEEEeCCCCEEEEEE----CC-CeEEEEEcc-----CCCc--ceEEEE--ecCCCCCEEEEEEeCCCCCEEEE
Confidence 5777889999998877776644 33 244444332 1110 011111 1234443 4688888899999
Q ss_pred ecCCCeEEEEEeeCceEEEEeccC--ce--eEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc-----cCC
Q 015220 211 SAQDSIYKVFDLKNYTMLYSISDK--NV--QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-----RNK 281 (411)
Q Consensus 211 ~~~ds~ykVWdL~~Ys~iysLs~~--~V--qeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~-----h~K 281 (411)
++.|+++++|++............ .+ ......++..++.... ...+++|++.+++........+. ...
T Consensus 75 g~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
T d1yfqa_ 75 GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW---DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN 151 (342)
T ss_dssp EETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET---TSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred cccccceeeeeccccccccccccccccccccccccccccccccccc---ccccceeeccccccceeeeccccccccccee
Confidence 999999999999998877666644 22 2222224444443332 23578999988776665432211 112
Q ss_pred cceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEee----ceeEEEE-ecCeEEEEecCCce-ee-
Q 015220 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE----NQLFLTF-RNRTVAVWNFRGEL-VT- 354 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~----sqlFlSf-sd~tI~iWn~~Gel-~~- 354 (411)
....+...+..++....+..+++||+.+++..........+......... ...++++ .|+++.+|+++... ..
T Consensus 152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~ 231 (342)
T d1yfqa_ 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred eeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence 22345566667788889999999999887654422223333333333332 2556666 88999999987321 11
Q ss_pred --------------eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 --------------SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 --------------s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
...+|.. .++.|..+||+.+|+||+.|. +|+|||+.+++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~-----~v~~l~~sp~~~~lasg~~Dg----------~v~vWD~~~~~~l 286 (342)
T d1yfqa_ 232 SSKRFAFRCHRLNLKDTNLAY-----PVNSIEFSPRHKFLYTAGSDG----------IISCWNLQTRKKI 286 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCC-----CEEEEEECTTTCCEEEEETTS----------CEEEEETTTTEEE
T ss_pred ccccceeeeeeeccCCCcccc-----cceeEEecCCccEEEEECCCC----------EEEEEECCCCcEE
Confidence 1123333 678899999999999999997 9999999999986
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=1.2e-12 Score=112.08 Aligned_cols=244 Identities=11% Similarity=0.095 Sum_probs=163.6
Q ss_pred ehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 015220 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (411)
Q Consensus 108 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 187 (411)
++.-..-|....||..+++ ..+...|.++.... +..++++| .|+ .++. -++...+.
T Consensus 24 l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~-~~~~~s~s---~D~--~v~~-----w~~~~~~~------- 79 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSK-AQEYSSIS---WDD--TLKV-----NGITKHEF------- 79 (287)
T ss_dssp TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCS-TTCCEEEE---TTT--EEEE-----TTEEEEEC-------
T ss_pred EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecC-CCeEEEEe---ecc--cccc-----cccccccc-------
Confidence 3344455777777766544 24445677776654 34454433 233 2221 12211111
Q ss_pred eecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecC
Q 015220 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 188 ~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
-..|.-+.+. .+|..++.. .++...+|+..+.+.+.++..+ .+..+.. ++..+++.....+ .+++|++.+
T Consensus 80 ----~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~--~v~~~~~~~ 150 (287)
T d1pgua2 80 ----GSQPKVASAN-NDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAVSL-SQNYVAVGLEEGN--TIQVFKLSD 150 (287)
T ss_dssp ----SSCEEEEEEC-SSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCEEEEEE-CSSEEEEEETTTS--CEEEEETTE
T ss_pred ----ccceeeeeec-cCCceEEEe-ecccceeeeccceeeeeeccccceeeeeec-cCcceeeeccccc--eeeeeeccc
Confidence 1123333333 455555554 4556788999999888888755 4444433 4455566554443 478999988
Q ss_pred CcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec------------
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN------------ 332 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s------------ 332 (411)
.+....+ ..+++.++..|..++++- +....+..|++||+.+++... ...-+|...+..++.+
T Consensus 151 ~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 151 LEVSFDL--KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT--SRWAFRTSKINAISWKPAEKGANEEEIE 226 (287)
T ss_dssp EEEEEEC--SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--CCSCCCSSCEEEEEECCCC------CCS
T ss_pred cceeeee--eeccCCceeEEEeccCccccccccccccccceeeccccccc--ccccccccccceeeecccccccccccCC
Confidence 8776663 346788899999998865 445578899999999998765 1344677778777643
Q ss_pred -eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 333 -QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 333 -qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
++++|+ .|++|+|||++ +++++.+++|.. .++.+..+||+ .|+|++.|. +|+||||
T Consensus 227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~-----~V~~v~~~~~~-~l~s~g~D~----------~v~iW~i 286 (287)
T d1pgua2 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-----GVNNLLWETPS-TLVSSGADA----------CIKRWNV 286 (287)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-----CEEEEEEEETT-EEEEEETTS----------CEEEEEE
T ss_pred CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC-----CeEEEEECCCC-EEEEEECCC----------eEEEEEE
Confidence 578888 78999999986 778999999998 89999999997 588998886 9999997
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.53 E-value=1.6e-12 Score=110.84 Aligned_cols=270 Identities=10% Similarity=0.034 Sum_probs=175.3
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCC-CceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTA-DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~-~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 183 (411)
+|++++-+..|...+||..|++.+=.|.... ..-+.+|-+......+++++ +.+ ..+ +.. ++.-|++-..
T Consensus 1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~---~~~-~~v--~v~---D~~t~~~~~~ 71 (337)
T d1pbyb_ 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS-ESL--VKI---DLVTGETLGR 71 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT-TEE--EEE---ETTTCCEEEE
T ss_pred CeEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE---CCC-CeE--EEE---ECCCCcEEEE
Confidence 5788888889999999999999888887643 34567777887666555422 111 111 222 2222322110
Q ss_pred Cccee-ecccCCCCeEEeeCCCCeEEEeec-----------CCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEE
Q 015220 184 FALFE-SESLKWPGFVEFDDVNGKVLTYSA-----------QDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLI 249 (411)
Q Consensus 184 ~~LF~-~~~l~~PgfvEFDd~NGkiLt~~~-----------~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai 249 (411)
.++-+ ......|.-+.|.+-..++++... .+....+||+.+.+.+..+... .+..+.+| ||.++++
T Consensus 72 ~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 151 (337)
T d1pbyb_ 72 IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYG 151 (337)
T ss_dssp EECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEE
T ss_pred EecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEE
Confidence 00101 112345667888754444444332 4788999999999999888755 78899999 8888887
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc--------------------------eeEEeecCceee
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--------------------------KLLVKQENENLQ 303 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e--------------------------kllIKQe~~~Lk 303 (411)
... ...+|+..++++..++.. +..+.. ....++ ........+.+.
T Consensus 152 ~~~-----~~~~~d~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (337)
T d1pbyb_ 152 LGR-----DLHVMDPEAGTLVEDKPI---QSWEAE-TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp ESS-----SEEEEETTTTEEEEEECS---TTTTTT-TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred EcC-----CcceeeeecCcEEEEeec---CCcccc-ceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEE
Confidence 653 257899999999987542 111110 011111 111223445689
Q ss_pred EEEcccceEEEeeccccCCCceEEEEeec--eeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEE
Q 015220 304 ILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (411)
Q Consensus 304 I~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i 380 (411)
+||+.+++.....-. .+......++.+ ..++...+++|++||+. |.++.+++- .. ....+++||||+.+
T Consensus 223 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~-----~~~~~~~s~dG~~l 294 (337)
T d1pbyb_ 223 TMDLETGEMAMREVR--IMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPL-PH-----SYYSVNVSTDGSTV 294 (337)
T ss_dssp EEETTTCCEEEEEEE--ECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEEC-SS-----CCCEEEECTTSCEE
T ss_pred EEEcCCCcEEEEEec--CCCcceEEEEecccceEEEEccccEEEEECCCCcEEEEEcC-CC-----CEEEEEECCCCCEE
Confidence 999999887653211 234444444433 55666678999999999 888887753 22 45789999999999
Q ss_pred EEEecCCCCCccccCCceEEEeeecceeee
Q 015220 381 ISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 381 iS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++++.+. +|.|||..|+|.+
T Consensus 295 ~v~~~~~----------~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 295 WLGGALG----------DLAAYDAETLEKK 314 (337)
T ss_dssp EEESBSS----------EEEEEETTTCCEE
T ss_pred EEEeCCC----------cEEEEECCCCcEE
Confidence 9998876 9999999999875
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.49 E-value=1.3e-12 Score=112.86 Aligned_cols=189 Identities=10% Similarity=0.091 Sum_probs=138.8
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
+|-..+|+.+++.. ++.+.|||+++...+..-....|+.++.| ||-.|++........ ++||++++|++.. +.
T Consensus 9 ~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~-v~v~d~~~~~~~~----~~ 82 (360)
T d1k32a3 9 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDF-LGIYDYRTGKAEK----FE 82 (360)
T ss_dssp EEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEE-EEEEETTTCCEEE----CC
T ss_pred cccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCE-EEEEECCCCcEEE----ee
Confidence 46667999998865 57899999988776654334499999999 898888766555433 8999999998765 56
Q ss_pred ccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-----------ecCeEE
Q 015220 278 HRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-----------RNRTVA 344 (411)
Q Consensus 278 ~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-----------sd~tI~ 344 (411)
+|...|..+..++++- .....+..+.+||+.+++...+..........+.|-...+.++.. .++.+.
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence 8899999999999854 556789999999999999888433332222333332223444322 345799
Q ss_pred EEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 345 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 345 iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+|+..+.....+..|.. ....+..+|||+.|++++.+. ++.+||..+..
T Consensus 163 v~d~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~s~~~----------~~~~~d~~~~~ 211 (360)
T d1k32a3 163 VYDMEGRKIFAATTENS-----HDYAPAFDADSKNLYYLSYRS----------LDPSPDRVVLN 211 (360)
T ss_dssp EEETTTTEEEECSCSSS-----BEEEEEECTTSCEEEEEESCC----------CCCEECSSSSC
T ss_pred eeccccCceeeeccccc-----ccccccccCCCCEEEEEeCCC----------ceEcccccccc
Confidence 99999666666666666 677899999999999999886 66667655443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=2.2e-12 Score=110.41 Aligned_cols=227 Identities=13% Similarity=0.135 Sum_probs=153.0
Q ss_pred cccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEE-eeC
Q 015220 124 TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVE-FDD 202 (411)
Q Consensus 124 t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvE-FDd 202 (411)
+++.+..|. ++..-|.+|-+++ |++. +.| -.+++- ++..++ -.|.+.|. .+.
T Consensus 2 ~~~~i~~l~-gH~~~I~~l~~s~----l~sg----s~D-g~v~~W-----d~~~~~------------~~h~~~V~~~~~ 54 (287)
T d1pgua2 2 HDEVLKTIS-GHNKGITALTVNP----LISG----SYD-GRIMEW-----SSSSMH------------QDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEEEEC-CCSSCEEEEETTT----TEEE----ETT-SCEEET-----TTTEEE------------CCCCSCEEEEEC
T ss_pred CcceeEEEC-CCCCceEEEEECc----EEEE----eCC-CeEEEE-----ECCCCC------------CCCCCCEEEEEe
Confidence 356666774 5777788888765 4442 333 112211 111111 12344332 334
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K 281 (411)
.++..+++.+.|+++|+|++.+.+. +.++..+..+ +|.+++..... .+.+|+..+|+.++++. ...
T Consensus 55 ~~~~~~~s~s~D~~v~~w~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~ 121 (287)
T d1pgua2 55 SKAQEYSSISWDDTLKVNGITKHEF-----GSQPKVASANNDGFTAVLTNDD----DLLILQSFTGDIIKSVR----LNS 121 (287)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEEC-----SSCEEEEEECSSSEEEEEETTS----EEEEEETTTCCEEEEEE----CSS
T ss_pred cCCCeEEEEeecccccccccccccc-----ccceeeeeeccCCceEEEeecc----cceeeeccceeeeeecc----ccc
Confidence 4556678888999999999987542 2355666667 77766654433 47789999999998844 345
Q ss_pred cceeeeeecceeEEeecC-ceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceee-
Q 015220 282 KVDFIEQFNEKLLVKQEN-ENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVT- 354 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQe~-~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~- 354 (411)
+.-.+...++.+++...+ +.+++||+.+.+...- ....|...+..+..+ +.++++ .|++|++||.+ ++...
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 199 (287)
T d1pgua2 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD--LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS 199 (287)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE--CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred eeeeeeccCcceeeeccccceeeeeeccccceeee--eeeccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence 566666677777777654 5799999987765542 233456667777765 677788 89999999999 77655
Q ss_pred eeccccccCCCCccceEEEcC----------CCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 355 SFEDHLLWHPDCNTNNIYITS----------DQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~----------Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.+..|.. .++.+..+| |+++++|||.|. +|.|||+.++
T Consensus 200 ~~~~h~~-----~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~----------~i~iw~~~~~ 247 (287)
T d1pgua2 200 RWAFRTS-----KINAISWKPAEKGANEEEIEEDLVATGSLDT----------NIFIYSVKRP 247 (287)
T ss_dssp CSCCCSS-----CEEEEEECCCC------CCSCCEEEEEETTS----------CEEEEESSCT
T ss_pred ccccccc-----ccceeeecccccccccccCCCCeeEeecCCC----------eEEEEECCCC
Confidence 5788877 677777765 567899999997 9999999874
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=4.7e-12 Score=105.82 Aligned_cols=261 Identities=8% Similarity=0.046 Sum_probs=163.6
Q ss_pred cceehhhhccccceeeecccccEEEEEe--CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLN--VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN--~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~ 182 (411)
.++++.-..-|..+.||..++.....+. .....-|.++=++.....+|.+ ...|. .++.. ++..+..
T Consensus 23 ~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~s--g~~d~--~v~~w-----~~~~~~~-- 91 (342)
T d1yfqa_ 23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV--GTVQG--EILKV-----DLIGSPS-- 91 (342)
T ss_dssp GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEE--EETTS--CEEEE-----CSSSSSS--
T ss_pred CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEE--ccccc--ceeee-----ecccccc--
Confidence 3566666677999999976655433222 2456678888777766666652 22333 12111 2211111
Q ss_pred CCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE----EEeccC----ceeEEEEe-CCEEEEEEecC
Q 015220 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML----YSISDK----NVQEIKIS-PGIMLLIFTKA 253 (411)
Q Consensus 183 ~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i----ysLs~~----~VqeIkIS-dG~~Lai~q~t 253 (411)
.......-.......+...++..++..+.++++++||+++.+.. ..+... ....+.++ ++..++.....
T Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (342)
T d1yfqa_ 92 --FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169 (342)
T ss_dssp --EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEEST
T ss_pred --cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCC
Confidence 11111122223345556667788888999999999999876533 222222 23333444 44444444332
Q ss_pred CCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec---ceeEEeecCceeeEEEcccceEE---------E---eecc
Q 015220 254 SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN---EKLLVKQENENLQILDVRNFELT---------E---VSRT 318 (411)
Q Consensus 254 ~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~---ekllIKQe~~~LkI~dL~t~e~~---------~---v~~T 318 (411)
-.+++|++.+++..............+.....++ ..+...+.+..+.+|++...... . ....
T Consensus 170 ---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
T d1yfqa_ 170 ---SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246 (342)
T ss_dssp ---TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred ---CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccC
Confidence 3589999999988776655555555555445443 34567778899999998653221 1 1223
Q ss_pred ccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 319 EFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 319 ~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.-.|..++.+++.+ ++|+|+ .|++|+|||++ +..+.+|..|.. ...+.+++||+++++++.|+
T Consensus 247 ~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~------~~~~~~s~~~~~l~~a~sdd 314 (342)
T d1yfqa_ 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE------DSVVKIACSDNILCLATSDD 314 (342)
T ss_dssp CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS------SEEEEEEECSSEEEEEEECT
T ss_pred CCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCC------CEEEEEEeCCCEEEEEEcCC
Confidence 34566677788765 789998 88999999999 999999876533 34688999999999999887
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.39 E-value=9.8e-12 Score=106.32 Aligned_cols=268 Identities=8% Similarity=-0.058 Sum_probs=169.6
Q ss_pred cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~ 184 (411)
.+++++....+...+||..|++.+=.+-.....-..+|-++.....+. |+... ++ .++.. ++..|+.-...
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~-v~~~~-~~----~v~~~---d~~t~~~~~~~ 78 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY-VLNNH-YG----DIYGI---DLDTCKNTFHA 78 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE-EEETT-TT----EEEEE---ETTTTEEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEE-EEECC-CC----cEEEE---eCccCeeeeee
Confidence 678888899999999999999988776544444456777777555444 33221 11 22333 23333221110
Q ss_pred cc--eeecccCCCCeEEeeCCCCeEE-Eee-----------cCCCeEEEEEeeCceEEEEec----cCceeEEEEe-CCE
Q 015220 185 AL--FESESLKWPGFVEFDDVNGKVL-TYS-----------AQDSIYKVFDLKNYTMLYSIS----DKNVQEIKIS-PGI 245 (411)
Q Consensus 185 ~L--F~~~~l~~PgfvEFDd~NGkiL-t~~-----------~~ds~ykVWdL~~Ys~iysLs----~~~VqeIkIS-dG~ 245 (411)
++ ........|.-+.|.+ +|+.| +.. ..+..+.+||..+.+.+..+. .+.+..+..+ ++.
T Consensus 79 ~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 79 NLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp ESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred cccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 00 0112334577788864 55544 332 347889999999877554433 3456666677 554
Q ss_pred EEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee----------------------------EEee
Q 015220 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL----------------------------LVKQ 297 (411)
Q Consensus 246 ~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl----------------------------lIKQ 297 (411)
+++ .. ..+++|++.+|+.+.++.. +.. ..-+...++.. ....
T Consensus 158 ~~~-~~-----~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (346)
T d1jmxb_ 158 LYV-AG-----PDIYKMDVKTGKYTVALPL---RNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 227 (346)
T ss_dssp EEE-ES-----SSEEEECTTTCCEEEEECS---TTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred EEE-eC-----CcceEEEccCCCEEEEEec---CCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeecc
Confidence 443 32 3589999999999998541 111 11111111111 1123
Q ss_pred cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEE
Q 015220 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 373 (411)
Q Consensus 298 e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~I 373 (411)
....+.+||+.+++.... ....+...+..++.+ ..++...+++|.+||+. |+++.+++-. . ....+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~-~-----~~~~va~ 299 (346)
T d1jmxb_ 228 LLYGYLSVDLKTGKTHTQ--EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD-H-----TYYCVAF 299 (346)
T ss_dssp EEEEEEEEETTTCCEEEE--EEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECS-S-----CCCEEEE
T ss_pred CCceEEEEECCCCceEEE--EeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcCC-C-----CEEEEEE
Confidence 456789999999887763 333455555555554 44555688899999998 9998887632 2 4678999
Q ss_pred cCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 374 TSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 374 s~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
||||..+++++.|. +|.|||..|+|++
T Consensus 300 s~DG~~l~v~~~d~----------~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 300 DKKGDKLYLGGTFN----------DLAVFNPDTLEKV 326 (346)
T ss_dssp CSSSSCEEEESBSS----------EEEEEETTTTEEE
T ss_pred cCCCCEEEEEeCCC----------cEEEEECccCCEE
Confidence 99999999999886 9999999999986
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.33 E-value=5.5e-10 Score=94.05 Aligned_cols=197 Identities=9% Similarity=0.066 Sum_probs=142.7
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
.|--+.|+.-..++++.+..++.++|||+++.+.+.++... .+..+.++ ||..+++..... ..+.+|++++++...
T Consensus 33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 110 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMAS--STLSVIDTTSNTVAG 110 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccccccccccc--ceeeecccccceeee
Confidence 46667887544446688889999999999999999998754 88899999 777776665544 457899999999998
Q ss_pred EeeeccccCCcceeeeeecceeEE---eecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKLLV---KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVW 346 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekllI---KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iW 346 (411)
.+ .+...+..+..++++..+ -+.+..+.+||..+++....... ..+|..+.+-... .++++. .++.+.+|
T Consensus 111 ~~----~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (301)
T d1l0qa2 111 TV----KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVI 185 (301)
T ss_dssp EE----ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ec----cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeecccccccccc
Confidence 83 344566778888776533 23577899999999998873222 1233333332222 456666 45688888
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.. +++...+..+. ....+++++||+.++.++.+. ..++|.+||+.||+++
T Consensus 186 ~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~v~~~~~-------~~~~v~v~D~~t~~~~ 237 (301)
T d1l0qa2 186 DTVTNSVIDTVKVEA------APSGIAVNPEGTKAYVTNVDK-------YFNTVSMIDTGTNKIT 237 (301)
T ss_dssp ETTTTEEEEEEECSS------EEEEEEECTTSSEEEEEEECS-------SCCEEEEEETTTTEEE
T ss_pred cccceeeeecccccC------Ccceeeccccccccccccccc-------eeeeeeeeecCCCeEE
Confidence 888 55555555443 356799999999998887764 4579999999999875
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.30 E-value=7.7e-11 Score=101.58 Aligned_cols=159 Identities=9% Similarity=0.030 Sum_probs=125.3
Q ss_pred CceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeE--EeecC--ceeeEEEccc
Q 015220 234 KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL--VKQEN--ENLQILDVRN 309 (411)
Q Consensus 234 ~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekll--IKQe~--~~LkI~dL~t 309 (411)
+-.+++.-+||..+|+... --|.||++++|++.. ++|...|..+.-++|+-. +.++. +.|.+||+.+
T Consensus 5 ~~~~~fSP~dG~~~a~~~~----g~v~v~d~~~~~~~~-----~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~ 75 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSR----GQAFIQDVSGTYVLK-----VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75 (360)
T ss_dssp GGEEEEEECGGGCEEEEET----TEEEEECTTSSBEEE-----CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT
T ss_pred hhcccccCCCCCEEEEEEC----CeEEEEECCCCcEEE-----ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC
Confidence 3445655557888888754 258899999998765 378889999999998753 34433 5799999999
Q ss_pred ceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEe
Q 015220 310 FELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 310 ~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
++..+ ...|+..+..+..+ +.+++. .++++.+|+.. |.+.+.+..|.. ....++.||||+.|+..+
T Consensus 76 ~~~~~----~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 76 GKAEK----FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGF 146 (360)
T ss_dssp CCEEE----CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEE
T ss_pred CcEEE----eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc-----cccchhhccceeeeeeec
Confidence 99886 34688888888877 455555 88899999999 778888888877 788899999999999888
Q ss_pred cCCCCCccccCCceEEEeeecceeee
Q 015220 385 KADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 385 ~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+.....+....+++.+||+.+|++.
T Consensus 147 ~~~~~~~~~~~~~~~~v~d~~~~~~~ 172 (360)
T d1k32a3 147 PLKHGETDGYVMQAIHVYDMEGRKIF 172 (360)
T ss_dssp EECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred cccccceeeccccceeeeccccCcee
Confidence 77755555566689999999999863
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.28 E-value=2.3e-10 Score=108.74 Aligned_cols=186 Identities=10% Similarity=0.039 Sum_probs=129.3
Q ss_pred EEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE--eeeccccCCcc
Q 015220 208 LTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS--FNHLLHRNKKV 283 (411)
Q Consensus 208 Lt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t--~~~LL~h~K~I 283 (411)
++...+++++.|||+++++.+..|. ++.+..+++| ||..|++.... -.++||++.||+.... .....+|.--+
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~d---g~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRD---GKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT---SEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCC---CCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 5788899999999999999999996 5589999999 99999987653 3799999999985443 22222332222
Q ss_pred eeeeeeccee-EEe--ecCceeeEEEcccceEEEeecc--------ccCCCceEEEEeec----eeEEEE-ecCeEEEEe
Q 015220 284 DFIEQFNEKL-LVK--QENENLQILDVRNFELTEVSRT--------EFMTPSAFIFLYEN----QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 284 ~FLE~~~ekl-lIK--Qe~~~LkI~dL~t~e~~~v~~T--------~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn 347 (411)
.....++|+. ++. ..++.++|||..+++...+... .+.+..-..+++.+ .++++. .+++|.+|+
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 2233344543 433 4688999999999998874321 22233334455554 567777 678999999
Q ss_pred cC-Cceeeeec-cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 348 FR-GELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~-Gel~~s~e-~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.. ++.....+ .+.. ....++++|||..++.++.+. .+|-++|..+++++
T Consensus 192 ~~~~~~~~~~~i~~g~-----~~~~~~~spdg~~~~va~~~~---------~~v~v~d~~~~~~~ 242 (432)
T d1qksa2 192 YTDLNNLKTTEISAER-----FLHDGGLDGSHRYFITAANAR---------NKLVVIDTKEGKLV 242 (432)
T ss_dssp TTCSSEEEEEEEECCS-----SEEEEEECTTSCEEEEEEGGG---------TEEEEEETTTTEEE
T ss_pred ccCCCcceEEEEcccC-----ccccceECCCCCEEEEecccc---------ceEEEeecccceEE
Confidence 88 66443222 2322 356799999999988888765 36777777776653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.23 E-value=3.6e-09 Score=92.00 Aligned_cols=265 Identities=13% Similarity=0.068 Sum_probs=156.1
Q ss_pred ceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce---eecccC
Q 015220 117 CAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF---ESESLK 193 (411)
Q Consensus 117 c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF---~~~~l~ 193 (411)
-.++|..||+.+-.++.+... ++-+....+.|.+++.+...-...-+=..+.+=++..|++-...++- ......
T Consensus 30 v~v~D~~tg~~~~~~~~g~~~---~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~ 106 (355)
T d2bbkh_ 30 QFVIDGEAGRVIGMIDGGFLP---NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 106 (355)
T ss_dssp EEEEETTTTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred EEEEECCCCcEEEEEECCCCC---ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCC
Confidence 456888889888888765443 46677777777776644321111000001111122333321110110 112235
Q ss_pred CCCeEEeeCCCCeEEEee-cCCCeEEEEEeeCceEEEEeccCc---------eeEEEEe-CCEEEEEEecCCCceeeEEE
Q 015220 194 WPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSISDKN---------VQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~-~~ds~ykVWdL~~Ys~iysLs~~~---------VqeIkIS-dG~~Lai~q~t~~~ipiKIl 262 (411)
.|.-+.|..-...+++.. ..+....+|++.+.+.+..+.... ...+.++ ||..+++....... +.++
T Consensus 107 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~--~~~~ 184 (355)
T d2bbkh_ 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT--PEIT 184 (355)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC--CEEE
T ss_pred CCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCe--EEEE
Confidence 678889998777777665 456789999999999998877442 2234555 66655554444433 2334
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeecc--eeEEeecCceeeEEEcccceEEEeecccc---------CCCceEEEEee
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEVSRTEF---------MTPSAFIFLYE 331 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v~~T~f---------~hpsAfifLy~ 331 (411)
+.++.+..+ ...+.......+ .++....+..+.+||+.+++...+..... .+|.....++.
T Consensus 185 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 256 (355)
T d2bbkh_ 185 HTEVFHPED--------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256 (355)
T ss_dssp ECCCCSCTT--------SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred eccccccee--------cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEE
Confidence 444444332 233333333333 34556788899999999988765322111 01111111222
Q ss_pred ----ceeEEEEec----------CeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCC--EEEEEecCCCCCcccc
Q 015220 332 ----NQLFLTFRN----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD--LIISYCKADSDDPLAE 394 (411)
Q Consensus 332 ----sqlFlSfsd----------~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd--~iiS~~~d~~~~~~~~ 394 (411)
+.+|++..+ ++|.+||.. |+++.+++.+. ....+++||||+ ++++++.|.
T Consensus 257 ~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~------~~~~~a~spDG~~~l~v~~~~d~------- 323 (355)
T d2bbkh_ 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------EIDSINVSQDEKPLLYALSTGDK------- 323 (355)
T ss_dssp ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTT-------
T ss_pred eCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC------CEEEEEEcCCCCeEEEEEECCCC-------
Confidence 255666543 479999999 99999887543 356799999998 556666665
Q ss_pred CCceEEEeeecceeee
Q 015220 395 GNGKLFVSLLMFVTCK 410 (411)
Q Consensus 395 ~~gtI~i~~i~tGk~~ 410 (411)
+|.+||+.|||++
T Consensus 324 ---~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 324 ---TLYIHDAESGEEL 336 (355)
T ss_dssp ---EEEEEETTTCCEE
T ss_pred ---EEEEEECCCCCEE
Confidence 9999999999975
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.21 E-value=2.9e-09 Score=98.65 Aligned_cols=267 Identities=10% Similarity=0.031 Sum_probs=169.0
Q ss_pred ehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 015220 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (411)
Q Consensus 108 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 187 (411)
+++....|.-+++|..|++.+=.|+... -+++|-|+...+.+.+.| .|. .++.. ++..|+. +.
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g~--~~~~vafSPDGk~l~~~~---~d~----~v~vw---d~~t~~~-----~~ 97 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIG---RDA----RIDMI---DLWAKEP-----TK 97 (426)
T ss_dssp EEEETTTTEEEEEETTTCSEEEEEECCS--SEEEEEECTTSCEEEEEE---TTS----EEEEE---ETTSSSC-----EE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEe---CCC----CEEEE---EccCCce-----eE
Confidence 4556789999999999999999999863 489999999888776543 232 22333 2222221 11
Q ss_pred ee--cccCCCCeEEeeC---CCCeEE-EeecCCCeEEEEEeeCceEEEEeccC--ce-----------eEEEEe-CCEEE
Q 015220 188 ES--ESLKWPGFVEFDD---VNGKVL-TYSAQDSIYKVFDLKNYTMLYSISDK--NV-----------QEIKIS-PGIML 247 (411)
Q Consensus 188 ~~--~~l~~PgfvEFDd---~NGkiL-t~~~~ds~ykVWdL~~Ys~iysLs~~--~V-----------qeIkIS-dG~~L 247 (411)
.. ....-|.-+-|.- ++|+.| +.+..++++++||.++.+++..+..+ .+ ..+..| |+..+
T Consensus 98 ~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~ 177 (426)
T d1hzua2 98 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 177 (426)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence 11 1111233333332 578754 66678999999999999988777644 33 333333 33333
Q ss_pred EEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEe-ecCceeeEEEcccceEEEee-ccccCCC
Q 015220 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVK-QENENLQILDVRNFELTEVS-RTEFMTP 323 (411)
Q Consensus 248 ai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIK-Qe~~~LkI~dL~t~e~~~v~-~T~f~hp 323 (411)
.+.....+ -+.++..+++..+... ..++.+.+.-++..+++. ++. +.++.+.+||+.+++..... .....++
T Consensus 178 ~~~~~~~~--~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (426)
T d1hzua2 178 IVNVKETG--KVLLVNYKDIDNLTVT--SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253 (426)
T ss_dssp EEEETTTT--EEEEEECSSSSSCEEE--EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCC
T ss_pred EEecCCCC--eEEEEEeccccceeeE--EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccc
Confidence 33333222 2344555555543321 346667777788877765 333 36778999999999987632 2223333
Q ss_pred ceEEEEeec----eeEEEE-ecCeEEEEecC--------CceeeeeccccccCCCCccceEEEcCCCCEEEE-------E
Q 015220 324 SAFIFLYEN----QLFLTF-RNRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS-------Y 383 (411)
Q Consensus 324 sAfifLy~s----qlFlSf-sd~tI~iWn~~--------Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS-------~ 383 (411)
......... ....++ .|+++.+|+.. +++..++++|.. .++.++.||||..|+. |
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~-----~v~~v~~sPdg~~l~v~~~~~~s~ 328 (426)
T d1hzua2 254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG-----GSLFIKTHPKSSHLYVDTTFNPDA 328 (426)
T ss_dssp SCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS-----CCCCEECCTTCSEEEECCTTCSSH
T ss_pred cceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCC-----ceeEEEcCCCCceEEEeecCCCCc
Confidence 322222211 122233 57888888765 478889999988 7999999999999994 4
Q ss_pred ecCCCCCccccCCceEEEeeecceeee
Q 015220 384 CKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 384 ~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.|+ ||+|||+.||++.
T Consensus 329 ~~~~----------tv~vwd~~t~~~~ 345 (426)
T d1hzua2 329 RISQ----------SVAVFDLKNLDAK 345 (426)
T ss_dssp HHHT----------CEEEEETTCTTSC
T ss_pred ccCC----------EEEEEECCCCCcC
Confidence 4444 9999999999753
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.21 E-value=1e-09 Score=101.72 Aligned_cols=191 Identities=10% Similarity=0.043 Sum_probs=127.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee--ccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH--LLH 278 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~--LL~ 278 (411)
..+..++...++++++|||+++++.+.+|. ++.+..+++| ||.+|++....+ .++||++.||+.+..... ..+
T Consensus 30 ~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~---~v~vwd~~t~~~~~~~~i~~~~~ 106 (426)
T d1hzua2 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDA---RIDMIDLWAKEPTKVAEIKIGIE 106 (426)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTS---EEEEEETTSSSCEEEEEEECCSE
T ss_pred CCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCC---CEEEEEccCCceeEEEEEeCCCC
Confidence 345566888899999999999999999997 4599999999 999999887543 699999999997765432 222
Q ss_pred cCCcceeeeeeccee--EEe-ecCceeeEEEcccceEEEeecc--------ccCCCceEEEEeec----eeEEEE-ecCe
Q 015220 279 RNKKVDFIEQFNEKL--LVK-QENENLQILDVRNFELTEVSRT--------EFMTPSAFIFLYEN----QLFLTF-RNRT 342 (411)
Q Consensus 279 h~K~I~FLE~~~ekl--lIK-Qe~~~LkI~dL~t~e~~~v~~T--------~f~hpsAfifLy~s----qlFlSf-sd~t 342 (411)
|..-+--++-++|+. ++. ..++.+++||..+++...+... .+.+......++.+ .++.+. ..+.
T Consensus 107 ~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~ 186 (426)
T d1hzua2 107 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186 (426)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCe
Confidence 222222233334443 343 3789999999999988773221 11111112223322 334444 4456
Q ss_pred EEEEecC-Cc-eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 343 VAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 343 I~iWn~~-Ge-l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.+++.. +. +..+..+|-. ....+.++|||+.++.++.+. ..+.++|..+|++.
T Consensus 187 i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~a~~~~---------~~~~~~~~~~~~~~ 242 (426)
T d1hzua2 187 VLLVNYKDIDNLTVTSIGAAP-----FLADGGWDSSHRYFMTAANNS---------NKVAVIDSKDRRLS 242 (426)
T ss_dssp EEEEECSSSSSCEEEEEECCS-----SEEEEEECTTSCEEEEEETTC---------SEEEEEETTTTEEE
T ss_pred EEEEEeccccceeeEEeccCC-----ccEeeeECCCCcEEEeeeecc---------cceeeeecccccEE
Confidence 6666666 33 3334455555 677899999999988887654 37888888888764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.20 E-value=1.8e-08 Score=88.68 Aligned_cols=271 Identities=10% Similarity=-0.046 Sum_probs=157.8
Q ss_pred cceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCccee---eccc
Q 015220 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE---SESL 192 (411)
Q Consensus 116 ~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~---~~~l 192 (411)
.-.++|..|++.+=.++..... .+-+......|.+++...........=..+.+-|+..+++-...++-. ....
T Consensus 48 ~v~v~D~~tg~~~~~~~~~~~~---~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 124 (373)
T d2madh_ 48 QQWVLDAGSGSILGHVNGGFLP---NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred eEEEEECCCCCEEEEEeCCCCc---cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEec
Confidence 3456788888888888765443 344555444544433221111111111122222333333211111000 1123
Q ss_pred CCCCeEEeeCCCCeEEEee-cCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 193 KWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~-~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
.+|.-+-|..-+....+.. ..++.+.+|+..+-+.+.... ....+.++ +|..+++....... +.+|+..++++.
T Consensus 125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~g~~~~v~~~~dg~--~~~~~~~~~~~~ 200 (373)
T d2madh_ 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS--SPTCYHIHPGAPSTFYLLCAQGG--LAKTDHAGGAAG 200 (373)
T ss_pred cCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec--cceeEEEecCCCcEEEEEcCCCe--EEEEEcCCceee
Confidence 3566677765555544444 346788899998888776665 34566677 66655555554444 678999999999
Q ss_pred eEeeecc---ccCCcceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceE--------------------
Q 015220 271 KSFNHLL---HRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAF-------------------- 326 (411)
Q Consensus 271 ~t~~~LL---~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf-------------------- 326 (411)
....-.. +...-..-+...+++. +....+..+.+||+.+++...+.... .++.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~ 279 (373)
T d2madh_ 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID-ALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred EEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeec-cccCcEEeeeeccCcceeeEEecCCC
Confidence 8754211 1112223344556655 44557788999999988765532221 111111
Q ss_pred ---EEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCC--EEEEEecCCCCCccccCCceE
Q 015220 327 ---IFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD--LIISYCKADSDDPLAEGNGKL 399 (411)
Q Consensus 327 ---ifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd--~iiS~~~d~~~~~~~~~~gtI 399 (411)
.+......+++. .++++.+||.. |+.+.+++-. . ....+++||||+ ++++++.|. +|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~-~-----~~~~~a~spDG~~~l~vt~~~d~----------~v 343 (373)
T d2madh_ 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-H-----DVDAISVAQDGGPDLYALSAGTE----------VL 343 (373)
T ss_pred eEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC-C-----CeeEEEECCCCCEEEEEEeCCCC----------eE
Confidence 111122344444 77899999998 9999988632 2 467899999998 456777776 99
Q ss_pred EEeeecceeee
Q 015220 400 FVSLLMFVTCK 410 (411)
Q Consensus 400 ~i~~i~tGk~~ 410 (411)
.+||+.|||.+
T Consensus 344 ~v~D~~tg~~~ 354 (373)
T d2madh_ 344 HIYDAGAGDQD 354 (373)
T ss_pred EEEECCCCCEE
Confidence 99999999975
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.19 E-value=7.2e-10 Score=94.54 Aligned_cols=154 Identities=8% Similarity=0.018 Sum_probs=107.0
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEec---cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc-
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL- 277 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs---~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL- 277 (411)
++|+-|+....++++.|||+++.+++.+++ +..+..+.+| ||.++++....++. |.+||+++|+++.++....
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~--v~~~d~~t~~~~~~~~~~~~ 83 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD--IYGIDLDTCKNTFHANLSSV 83 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE--EEEEETTTTEEEEEEESCCS
T ss_pred CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCc--EEEEeCccCeeeeeeccccc
Confidence 688999999999999999999999999876 2378899999 89988888777665 5789999999999865221
Q ss_pred --ccCCcceeeeeeccee--EEe------------ecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEEec
Q 015220 278 --HRNKKVDFIEQFNEKL--LVK------------QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTFRN 340 (411)
Q Consensus 278 --~h~K~I~FLE~~~ekl--lIK------------Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSfsd 340 (411)
.+...+.-++.++|+- ++. .+...+.+||..+++....-.... .|....++..+ .-.+...+
T Consensus 84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 162 (346)
T d1jmxb_ 84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVAG 162 (346)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEES
T ss_pred ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-ccCceEEEEecCCCEEEEeC
Confidence 1122345577777753 333 357889999999987665322222 34333333333 11122245
Q ss_pred CeEEEEecC-Cceeeeeccc
Q 015220 341 RTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 341 ~tI~iWn~~-Gel~~s~e~H 359 (411)
..+.+|+.. |+.++++..|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~ 182 (346)
T d1jmxb_ 163 PDIYKMDVKTGKYTVALPLR 182 (346)
T ss_dssp SSEEEECTTTCCEEEEECST
T ss_pred CcceEEEccCCCEEEEEecC
Confidence 678888887 8887776543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.07 E-value=4e-09 Score=89.47 Aligned_cols=196 Identities=12% Similarity=0.049 Sum_probs=137.2
Q ss_pred CCCCeEEeeCCCCeEE-EeecCCCeEEEEEeeCceEEEEeccC-------ceeEEEEe-CCEEEEEEecCC---------
Q 015220 193 KWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISDK-------NVQEIKIS-PGIMLLIFTKAS--------- 254 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiL-t~~~~ds~ykVWdL~~Ys~iysLs~~-------~VqeIkIS-dG~~Lai~q~t~--------- 254 (411)
..|.-+-|+ ++|+.| +.+..++.+.|||+.+.+++.++... .+..+.+| ||..+++.....
T Consensus 34 ~~~~~i~~s-pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T d1pbyb_ 34 PTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp TCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CCccEEEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence 458889998 577755 77788999999999999999888632 34567888 777777665433
Q ss_pred CceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeecc-ccCCCceEE-----E
Q 015220 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT-EFMTPSAFI-----F 328 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T-~f~hpsAfi-----f 328 (411)
....+.+|++++++++.++. ....+..+..++++-++...++...+||..+++....-+. ....+.++. +
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (337)
T d1pbyb_ 113 QPTRVALYDAETLSRRKAFE----APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV 188 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEE----CCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred cccceeeccccCCeEEEecc----ccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCccee
Confidence 23467899999999999844 3466888999999887777788899999999987762211 111111110 0
Q ss_pred Ee-------eceeEEE-----------EecCeEEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 329 LY-------ENQLFLT-----------FRNRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 329 Ly-------~sqlFlS-----------fsd~tI~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
.. ....+.+ -.+..+.+|+.. |.... .+..|.. ..-....++|+..+.+. +.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~- 260 (337)
T d1pbyb_ 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV-----FYFSTAVNPAKTRAFGA--YN- 260 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS-----CEEEEEECTTSSEEEEE--ES-
T ss_pred eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCc-----ceEEEEecccceEEEEc--cc-
Confidence 00 0011111 135579999998 77554 4555555 56678899999988655 34
Q ss_pred CCccccCCceEEEeeecceeee
Q 015220 389 DDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|.+||+.||+++
T Consensus 261 ---------~i~v~d~~~~~~~ 273 (337)
T d1pbyb_ 261 ---------VLESFDLEKNASI 273 (337)
T ss_dssp ---------EEEEEETTTTEEE
T ss_pred ---------cEEEEECCCCcEE
Confidence 8999999999975
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.04 E-value=1.2e-08 Score=88.53 Aligned_cols=201 Identities=10% Similarity=-0.005 Sum_probs=136.5
Q ss_pred CCeEEeeCCCCeEEEee-----cCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCc-------eeeEE
Q 015220 195 PGFVEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGH-------VPLKI 261 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~-----~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~-------ipiKI 261 (411)
|..+..-.+||+.+... ..++++-|||..+.+++.++.......+.+| ||..|++....... -.|.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 55555556889887432 3467899999999999999987777789999 99988877654332 36999
Q ss_pred EEecCCcEEeEeeeccccCC----cceeeeeeccee--EEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeece
Q 015220 262 LSIEDGTVLKSFNHLLHRNK----KVDFIEQFNEKL--LVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ 333 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K----~I~FLE~~~ekl--lIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sq 333 (411)
||++||+++.++.....+.. ...-++.++++- ++.+ .+..+.+||+.+++... +.-.+..+.++.....
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 159 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR---MLDVPDCYHIFPTAPD 159 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE---EEECCSEEEEEEEETT
T ss_pred EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee---EEecCCcceEeecCCc
Confidence 99999999998653322222 224467777764 4443 56789999999999887 4333444555555566
Q ss_pred eEEEE-ecCeEEEEecC--Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 334 LFLTF-RNRTVAVWNFR--GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~--Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.++++ .|++..+|... +.+.. ..+.... .....++....++++..++..+.+. ++.+||+.+|++
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~ 228 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-EDEFLINHPAYSQKAGRLVWPTYTG----------KIHQIDLSSGDA 228 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSC-TTSCBCSCCEEETTTTEEEEEBTTS----------EEEEEECTTSSC
T ss_pred ceEEEcCCCCEEEEEecCCCeEEEEecccccc-eecceeeeccccCCCCeEEEecCCC----------eEEEEecCCCcE
Confidence 77777 77777777666 32222 2111111 1122456667777777777777665 899999888865
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=3e-08 Score=84.71 Aligned_cols=179 Identities=10% Similarity=0.071 Sum_probs=124.3
Q ss_pred eEEEeecCCCeEEEEEeeCc---eEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 206 KVLTYSAQDSIYKVFDLKNY---TMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Y---s~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
.+.++++++++++||++.+- +.+..+.. .+|+.+.+| ||..|++....... |.+|+|.+++...++.......
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~--i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR--VLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTE--EEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCe--EEEEEEeCCCCcEEEeeecccC
Confidence 35688999999999999874 44555553 489999999 99999888766655 5789999877665554444556
Q ss_pred Ccceeeeeecce--eEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE--ecCeEEEEecC--C
Q 015220 281 KKVDFIEQFNEK--LLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF--RNRTVAVWNFR--G 350 (411)
Q Consensus 281 K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf--sd~tI~iWn~~--G 350 (411)
..+..|+.++|+ +++.. .+..+.+|+............. .++...+.++.+ +.+++. .+..|.+|+.. +
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceeccccc-CCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence 667779999985 45665 5778999999887766543322 244444444433 433333 66789999998 3
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
........+......+....+++++++..++......
T Consensus 162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~ 198 (333)
T d1ri6a_ 162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN 198 (333)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred cceeeeceeeeeecCCCccEEEEeccceeEEeecccc
Confidence 3444444444445566778899999999987665443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.91 E-value=1.5e-07 Score=84.51 Aligned_cols=200 Identities=8% Similarity=-0.036 Sum_probs=124.7
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
...+|.-+.|..-..+++++...++++.+||+.+.+.+..+.-.....+.-. +..+++ ..+.. -+.++++.++..
T Consensus 122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~Dg---~~~~~~~~~~~~ 197 (368)
T d1mdah_ 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYL-GSCPA---SLAASDLAAAPA 197 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEEC-CCCTT---SCEEEECCSSCC
T ss_pred ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEE-EcCCC---CEEEEEecCCce
Confidence 3456888999765555667777899999999999999887764321111111 111111 11111 133344443333
Q ss_pred EeEe---eeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeecccc---------CCCceEEEEee----ce
Q 015220 270 LKSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF---------MTPSAFIFLYE----NQ 333 (411)
Q Consensus 270 L~t~---~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f---------~hpsAfifLy~----sq 333 (411)
.... ....++...++......++..+...+..+.++|+..++...+..... ..|.....++. +.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~ 277 (368)
T d1mdah_ 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred eeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE
Confidence 2211 12344555666777788888888888889999988877665332111 11221111222 25
Q ss_pred eEEEEec---------CeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCC--EEEEEecCCCCCccccCCceEEE
Q 015220 334 LFLTFRN---------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD--LIISYCKADSDDPLAEGNGKLFV 401 (411)
Q Consensus 334 lFlSfsd---------~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd--~iiS~~~d~~~~~~~~~~gtI~i 401 (411)
+|++..+ ++|.+||.. |.++.++..+. ....+.+||||+ +.+++..|. +|.+
T Consensus 278 ~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~------~~~~~a~spDG~~~ly~s~~~~~----------~v~v 341 (368)
T d1mdah_ 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTE----------VLDI 341 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTT----------EEEE
T ss_pred EEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC------ceeEEEECCCCCEEEEEEeCCCC----------eEEE
Confidence 5665422 369999999 99998887543 467899999998 345666665 9999
Q ss_pred eeecceeee
Q 015220 402 SLLMFVTCK 410 (411)
Q Consensus 402 ~~i~tGk~~ 410 (411)
||..|||++
T Consensus 342 ~D~~tgk~~ 350 (368)
T d1mdah_ 342 YDAASDQDQ 350 (368)
T ss_dssp EESSSCEEE
T ss_pred EECCCCCEE
Confidence 999999975
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.91 E-value=7e-08 Score=91.30 Aligned_cols=249 Identities=12% Similarity=0.069 Sum_probs=154.5
Q ss_pred CCcccccccccccccceEEEeeccce-ehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecC
Q 015220 82 KGHCSMVLPFLRKRSKIIEIVAARDI-VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASD 160 (411)
Q Consensus 82 ~~~~~~~l~~l~~RS~V~EIv~a~di-i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd 160 (411)
++...|..|+-..+.++........+ ++....+|.-+++|..|++.++.|+... -++++-|+..-+.+.+.| .|
T Consensus 8 ~~~w~v~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s---~d 82 (432)
T d1qksa2 8 RESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIG---RD 82 (432)
T ss_dssp HHHCEESSCGGGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEE---TT
T ss_pred hhceeEecccccCCCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEc---CC
Confidence 34444545543344444433333444 4788889999999999999999999864 589999999888887644 23
Q ss_pred CCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEee---CCCCeEE-EeecCCCeEEEEEeeCceEEEEeccC--
Q 015220 161 NFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFD---DVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISDK-- 234 (411)
Q Consensus 161 ~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFD---d~NGkiL-t~~~~ds~ykVWdL~~Ys~iysLs~~-- 234 (411)
+ ..+.. ++..++... .-+=.....|.=+-+. .++|+-| +.+..+++++|||..+.+++..+..+
T Consensus 83 g----~v~~~---d~~t~~~~~---~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~ 152 (432)
T d1qksa2 83 G----KVNMI---DLWMKEPTT---VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152 (432)
T ss_dssp S----EEEEE---ETTSSSCCE---EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred C----CEEEE---EeeCCCceE---EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc
Confidence 3 23333 232222100 1110011111111121 4688864 78888999999999999999877632
Q ss_pred -----------ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEee-cC
Q 015220 235 -----------NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQ-EN 299 (411)
Q Consensus 235 -----------~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQ-e~ 299 (411)
....|..| ||..+++.....+ .+.+|+..+++.+.... +++.+.++-++.++++. ++.. .+
T Consensus 153 ~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~--~i~~~d~~~~~~~~~~~--i~~g~~~~~~~~spdg~~~~va~~~~ 228 (432)
T d1qksa2 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETG--KILLVDYTDLNNLKTTE--ISAERFLHDGGLDGSHRYFITAANAR 228 (432)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTT--EEEEEETTCSSEEEEEE--EECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred cccceeccCCCceeEEEECCCCCEEEEEEccCC--eEEEEEccCCCcceEEE--EcccCccccceECCCCCEEEEecccc
Confidence 44556667 6665555544333 46788888888766433 35556777889999965 4444 67
Q ss_pred ceeeEEEcccceEEEeecccc--CCCceEEEEe---eceeEEEE--ecCeEEEEecC
Q 015220 300 ENLQILDVRNFELTEVSRTEF--MTPSAFIFLY---ENQLFLTF--RNRTVAVWNFR 349 (411)
Q Consensus 300 ~~LkI~dL~t~e~~~v~~T~f--~hpsAfifLy---~sqlFlSf--sd~tI~iWn~~ 349 (411)
+.+.++|..+++....-.|.. .|+....... ....+.+. .+++|.+|+..
T Consensus 229 ~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~ 285 (432)
T d1qksa2 229 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 285 (432)
T ss_dssp TEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccc
Confidence 789999999998887544432 1232222222 22445555 37789999764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=5.8e-06 Score=70.19 Aligned_cols=279 Identities=10% Similarity=0.017 Sum_probs=159.0
Q ss_pred hhhhccccceeeecccccEEEEEe-CCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 015220 109 FALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (411)
Q Consensus 109 ~~L~~sG~c~af~~~t~~~ic~lN-~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 187 (411)
++=..++.-.+|+..++.-+..+. .....-+++|-++...+.|.+ +. .++ ..++.-.+ ..++. .....-
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v-~~--~~d-~~i~~~~i-----~~~~~-~~~~~~ 77 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYV-GV--RPE-FRVLAYRI-----APDDG-ALTFAA 77 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEE-EE--TTT-TEEEEEEE-----CTTTC-CEEEEE
T ss_pred EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEE-EE--CCC-CeEEEEEE-----eCCCC-cEEEee
Confidence 444577888888865443333332 123345789999998888854 22 222 12222111 11000 001111
Q ss_pred eecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec----cCceeEEEEe-CCEEEEEEecCCCceeeEEE
Q 015220 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 188 ~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs----~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl 262 (411)
....-..|-.+.|+.-...+++.+..+.++.+|+..+........ ...+..+.+| ||..++........ +.+|
T Consensus 78 ~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~--i~~~ 155 (333)
T d1ri6a_ 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR--ICLF 155 (333)
T ss_dssp EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE--EEEE
T ss_pred ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccce--eeEE
Confidence 122334588899986655666766778999999999877554433 2378889999 88887777766554 5688
Q ss_pred EecCCcEEeEee---eccccCCcceeeeeecceeEEe---ecCceeeEEEcccce--EEE---e--eccccCCCceEEEE
Q 015220 263 SIEDGTVLKSFN---HLLHRNKKVDFIEQFNEKLLVK---QENENLQILDVRNFE--LTE---V--SRTEFMTPSAFIFL 329 (411)
Q Consensus 263 ~I~tG~~L~t~~---~LL~h~K~I~FLE~~~ekllIK---Qe~~~LkI~dL~t~e--~~~---v--~~T~f~hpsAfifL 329 (411)
+..++....... ........++-+...++...+. ..+....+|+..... ... + ....+....+-..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (333)
T d1ri6a_ 156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 235 (333)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred EeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeE
Confidence 887765544322 1223334445677777765332 356677777754421 111 1 01111111222222
Q ss_pred eec----eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe-
Q 015220 330 YEN----QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS- 402 (411)
Q Consensus 330 y~s----qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~- 402 (411)
+.+ .+|++. .++++.+|++. ........+|..... ....+++||||+.|+.++.+. ++|.+|
T Consensus 236 ~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~a~spDGk~l~va~~~~---------~~v~v~~ 304 (333)
T d1ri6a_ 236 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAGQKS---------HHISVYE 304 (333)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEECTTT---------CEEEEEE
T ss_pred EEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCC--CeeEEEEeCCCCEEEEEECCC---------CeEEEEE
Confidence 222 456666 67899999998 333344445443111 346799999999876665432 399999
Q ss_pred -eecceeee
Q 015220 403 -LLMFVTCK 410 (411)
Q Consensus 403 -~i~tGk~~ 410 (411)
|..||++.
T Consensus 305 id~~tG~l~ 313 (333)
T d1ri6a_ 305 IVGEQGLLH 313 (333)
T ss_dssp EETTTTEEE
T ss_pred EECCCCcEE
Confidence 55789873
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.73 E-value=1.1e-06 Score=76.92 Aligned_cols=188 Identities=7% Similarity=0.012 Sum_probs=119.9
Q ss_pred CCCeEEEee-----cCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCc-------eeeEEEEecCCcE
Q 015220 203 VNGKVLTYS-----AQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGH-------VPLKILSIEDGTV 269 (411)
Q Consensus 203 ~NGkiLt~~-----~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~-------ipiKIl~I~tG~~ 269 (411)
++|+-+... ..++...|||..+.+.+.++.......+.+| ||..|++......+ -.+.||+++||++
T Consensus 30 pdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~ 109 (373)
T d2madh_ 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP 109 (373)
T ss_pred CCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcE
Confidence 677765432 2345788999999999999998877789999 99999998765433 3589999999999
Q ss_pred EeEeeeccccCCcce-------eeeeeccee--EEe--ecCceeeEEEcccceEEEeeccccCCCceEEEEee-ceeEEE
Q 015220 270 LKSFNHLLHRNKKVD-------FIEQFNEKL--LVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLT 337 (411)
Q Consensus 270 L~t~~~LL~h~K~I~-------FLE~~~ekl--lIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~-sqlFlS 337 (411)
+.++. .+..+.. -+..+.++- ++. +.++.+.+||..+++.... ...|..+.+... ..+|++
T Consensus 110 ~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~ 182 (373)
T d2madh_ 110 IADIE---LPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYL 182 (373)
T ss_pred EEEEe---cCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE----eccceeEEEecCCCcEEEE
Confidence 98854 2222221 233333322 222 4566777888877776642 223444444333 367888
Q ss_pred E-ecCeEEEEecC-CceeeeeccccccCCCC-ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 338 F-RNRTVAVWNFR-GELVTSFEDHLLWHPDC-NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 338 f-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c-~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+ .|+++.+|+.. +++......+......+ ....+..++++.++.+. .+. ++.+|+..+++
T Consensus 183 ~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~v~~~~~~~~~ 245 (373)
T d2madh_ 183 LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSG----------KILQADISAAG 245 (373)
T ss_pred EcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEec-CCc----------eEEEEEcCCCe
Confidence 8 89999999999 77777776665432222 23344555666555432 232 56666665554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.29 E-value=1.1e-05 Score=72.08 Aligned_cols=169 Identities=8% Similarity=-0.091 Sum_probs=113.4
Q ss_pred cCCCe--EEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCc-------eeeEEEEecCCcEEeEeeeccc---
Q 015220 212 AQDSI--YKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGH-------VPLKILSIEDGTVLKSFNHLLH--- 278 (411)
Q Consensus 212 ~~ds~--ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~-------ipiKIl~I~tG~~L~t~~~LL~--- 278 (411)
..+++ +.|||-.+.+.+..+.......+.+| ||..|++......+ --|.+||..||+++.++....+
T Consensus 41 ~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~ 120 (368)
T d1mdah_ 41 YFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120 (368)
T ss_dssp TTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred cCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcccee
Confidence 33455 44559999999999988877789999 99999988754332 3499999999999998652111
Q ss_pred -cCCcceeeeeecce--eEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC--Cc
Q 015220 279 -RNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR--GE 351 (411)
Q Consensus 279 -h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~--Ge 351 (411)
......-++.++|+ +++.+ .++.+.+||+.+++.... .-.+....++-.-+..|+++ .|+++.+|++. |.
T Consensus 121 ~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~ 197 (368)
T d1mdah_ 121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQL---TKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEE---EECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEE---eeccCcceEccCCCceEEEEcCCCCEEEEEecCCce
Confidence 11223457888887 56666 568999999999998873 22222333344556788888 89999999988 33
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEE
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
....-.....-..+.....+.-.+++..+.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (368)
T d1mdah_ 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred eeeeeecccccccccceeecccccCcEEEEec
Confidence 32221111111233355667777777777654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.13 E-value=3e-05 Score=71.52 Aligned_cols=127 Identities=9% Similarity=-0.042 Sum_probs=90.4
Q ss_pred eeEEEEecCCcEEeEee--eccccCCcceeeeeecceeEEe--ecC---------ceeeEEEcccceEEEeeccccCCCc
Q 015220 258 PLKILSIEDGTVLKSFN--HLLHRNKKVDFIEQFNEKLLVK--QEN---------ENLQILDVRNFELTEVSRTEFMTPS 324 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~--~LL~h~K~I~FLE~~~ekllIK--Qe~---------~~LkI~dL~t~e~~~v~~T~f~hps 324 (411)
.+.+|++.||+....+. .+-.+.+.|.-...++|+..|. ++. ..+.|||+.+++.. ++-.+|.
T Consensus 37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~ 112 (470)
T d2bgra1 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPN 112 (470)
T ss_dssp CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCT
T ss_pred cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc----ccccCCc
Confidence 37899999999875432 3445567889999999987444 432 35679999999976 5566888
Q ss_pred eEEEEeec---eeEEEEecCeEEEEecC-CceeeeeccccccC-------------CCCccceEEEcCCCCEEEEEecCC
Q 015220 325 AFIFLYEN---QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWH-------------PDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 325 AfifLy~s---qlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~-------------~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
......-| +.++..+++.+.+|+.. |+..+...++.... ..=....+.-||||+.|+.+..|.
T Consensus 113 ~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 113 NTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp TEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred cccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence 88887777 55555699999999999 76665444332210 000235678999999999998876
Q ss_pred C
Q 015220 388 S 388 (411)
Q Consensus 388 ~ 388 (411)
+
T Consensus 193 ~ 193 (470)
T d2bgra1 193 T 193 (470)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.09 E-value=0.00071 Score=59.24 Aligned_cols=183 Identities=13% Similarity=0.227 Sum_probs=117.2
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--------ceeEEEEe--CCEEEEEEecCCCceee
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--------NVQEIKIS--PGIMLLIFTKASGHVPL 259 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--------~VqeIkIS--dG~~Lai~q~t~~~ipi 259 (411)
..|.+|.-|-+|. +|++.++...++.++|||.. .+.+.++... .-..+.+. .|..++.....+.. |
T Consensus 20 g~f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--i 95 (279)
T d1q7fa_ 20 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ--I 95 (279)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE--E
T ss_pred CeECCccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccc--c
Confidence 3588999999985 89999999999999999965 5667666311 22334433 46666655555544 3
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeeccee-EEee-cCceeeEEEcccceEEEee-ccccCCCceEEEEeeceeEE
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQ-ENENLQILDVRNFELTEVS-RTEFMTPSAFIFLYENQLFL 336 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQ-e~~~LkI~dL~t~e~~~v~-~T~f~hpsAfifLy~sqlFl 336 (411)
.+++ .+|+...++. ...-....-+++-.++. ++.. .++++.++|-...-...+. .+.+..|....+-...++|+
T Consensus 96 ~~~~-~~g~~~~~~~--~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v 172 (279)
T d1q7fa_ 96 QIYN-QYGQFVRKFG--ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI 172 (279)
T ss_dssp EEEC-TTSCEEEEEC--TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred cccc-ccccceeecC--CCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEe
Confidence 4555 4788887753 22334455677766544 4443 4566777775443333332 22333333332222337888
Q ss_pred EE-ecCeEEEEecCCceeeeec--cccccCCCCccceEEEcCCCCEEEEEe
Q 015220 337 TF-RNRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 337 Sf-sd~tI~iWn~~Gel~~s~e--~H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
+- .++.|.+||..|+.+.++- ++.. .-.-|++.+||+++|+-+
T Consensus 173 ~d~~~~~V~~~d~~G~~~~~~g~~g~~~-----~P~giavD~~G~i~Vad~ 218 (279)
T d1q7fa_ 173 SDNRAHCVKVFNYEGQYLRQIGGEGITN-----YPIGVGINSNGEILIADN 218 (279)
T ss_dssp EEGGGTEEEEEETTCCEEEEESCTTTSC-----SEEEEEECTTCCEEEEEC
T ss_pred eeccccceeeeecCCceeeeeccccccc-----CCcccccccCCeEEEEEC
Confidence 87 7889999999999999883 3332 345689999999999743
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=0.00037 Score=60.52 Aligned_cols=192 Identities=12% Similarity=0.111 Sum_probs=129.8
Q ss_pred cceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEE
Q 015220 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 185 ~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl 262 (411)
..+......+|--+.+|+ +|++.+.....+.+++++-.+...+..... .....|.+. +|.++. .+...++ +.++
T Consensus 49 ~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v-~d~~~~~--~~~~ 124 (260)
T d1rwia_ 49 TVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYV-ADRGNNR--VVKL 124 (260)
T ss_dssp EECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEE-EEGGGTE--EEEE
T ss_pred EEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEe-ecccccc--cccc
Confidence 344445567899999985 789999999999999998887776655543 467889987 776544 4444332 2233
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeecc-eeEEe-ecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-e
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNE-KLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-R 339 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~e-kllIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-s 339 (411)
+..+.. +..+ ...-....+-|.+.++ ++++. ..++.|..+|...+....+..+.+..|..+.+-....||++= .
T Consensus 125 ~~~~~~-~~~~--~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~ 201 (260)
T d1rwia_ 125 AAGSKT-QTVL--PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN 201 (260)
T ss_dssp CTTCSS-CEEC--CCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT
T ss_pred ccccce-eeee--eecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC
Confidence 333222 2221 1222344566777666 55555 567789999998888777777888888766554445888888 6
Q ss_pred cCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 340 NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 340 d~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
++.|..++..|...+.+..-.+. .-..|++++||.+.|+=....
T Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~----~P~~i~~d~~g~l~vad~~~~ 245 (260)
T d1rwia_ 202 TNQVVKLLAGSTTSTVLPFTGLN----TPLAVAVDSDRTVYVADRGND 245 (260)
T ss_dssp TTEEEEECTTCSCCEECCCCSCC----CEEEEEECTTCCEEEEEGGGT
T ss_pred CCEEEEEeCCCCeEEEEccCCCC----CeEEEEEeCCCCEEEEECCCC
Confidence 77899999998877766433332 446899999999999844443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.68 E-value=0.0066 Score=52.85 Aligned_cols=196 Identities=10% Similarity=0.235 Sum_probs=126.4
Q ss_pred cCCCCeEEeeCCCCe-EEEeecCCCeEEEEEeeCceEEEEeccC---ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 192 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 192 l~~PgfvEFDd~NGk-iLt~~~~ds~ykVWdL~~Ys~iysLs~~---~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
..+|.-+-+++..|. +++....+..+.+++.. .+.+.++... ....+.+. +|.+++. +.... .+.+++ .+
T Consensus 69 ~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~-~~~~~--~~~~~~-~~ 143 (279)
T d1q7fa_ 69 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVV-ECKVM--RVIIFD-QN 143 (279)
T ss_dssp BSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEE-ETTTT--EEEEEC-TT
T ss_pred ccccccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEE-eeccc--eeeEec-cC
Confidence 346777777666554 44455566677777764 4455555433 55778887 6775544 33333 344555 68
Q ss_pred CcEEeEeeeccccCCcceeeeeecce-eEEee-cCceeeEEEcccceEEEee-ccccCCCceEEEEeeceeEEEE--ecC
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFNEK-LLVKQ-ENENLQILDVRNFELTEVS-RTEFMTPSAFIFLYENQLFLTF--RNR 341 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~ek-llIKQ-e~~~LkI~dL~t~e~~~v~-~T~f~hpsAfifLy~sqlFlSf--sd~ 341 (411)
|+.+.++.. -.+......+...+++ +++.. .++.+++||..-.....+. ...+.+|..+.+=..-++|++= .+.
T Consensus 144 g~~~~~~g~-~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~ 222 (279)
T d1q7fa_ 144 GNVLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF 222 (279)
T ss_dssp SCEEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred Cceeecccc-cccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCc
Confidence 999888652 2344556677777664 55544 5678999997544444442 2356678775443444889886 345
Q ss_pred eEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 342 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 342 tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.|.+++..|++++++...... ..-..|++++||.++|+ +.+. +|.+|...++
T Consensus 223 ~v~~f~~~G~~~~~~~~~~~~---~~p~~vav~~dG~l~V~-~~n~----------~v~~fr~~~~ 274 (279)
T d1q7fa_ 223 NLTIFTQDGQLISALESKVKH---AQCFDVALMDDGSVVLA-SKDY----------RLYIYRYVQL 274 (279)
T ss_dssp EEEEECTTSCEEEEEEESSCC---SCEEEEEEETTTEEEEE-ETTT----------EEEEEECSCC
T ss_pred EEEEECCCCCEEEEEeCCCCC---CCEeEEEEeCCCcEEEE-eCCC----------eEEEEEeeee
Confidence 799999999999998765431 13467999999998775 3444 8999877654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.51 E-value=0.00032 Score=64.47 Aligned_cols=106 Identities=7% Similarity=0.026 Sum_probs=78.0
Q ss_pred ecceeEEeecCceeeEEEcccceEEEe-e-ccccCCCceEEEEeec--eeEEEE-e----------cCeEEEEecCCcee
Q 015220 289 FNEKLLVKQENENLQILDVRNFELTEV-S-RTEFMTPSAFIFLYEN--QLFLTF-R----------NRTVAVWNFRGELV 353 (411)
Q Consensus 289 ~~ekllIKQe~~~LkI~dL~t~e~~~v-~-~T~f~hpsAfifLy~s--qlFlSf-s----------d~tI~iWn~~Gel~ 353 (411)
.++..++-+++..|.+||+.+++...+ . .+.-.|..++..+..| .-++.| + ++.+.+||+.+.-+
T Consensus 25 ~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~ 104 (470)
T d2bgra1 25 ISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL 104 (470)
T ss_dssp CSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc
Confidence 356777788889999999999988763 2 2444456667676666 223333 3 35678999995557
Q ss_pred eeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 354 ~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..+.+|.. .+..+..||||+.|+..+. . .+.+|+..+|+..
T Consensus 105 ~~l~~~~~-----~~~~~~~SPDG~~ia~~~~-~----------~l~~~~~~~g~~~ 145 (470)
T d2bgra1 105 ITEERIPN-----NTQWVTWSPVGHKLAYVWN-N----------DIYVKIEPNLPSY 145 (470)
T ss_dssp CCSSCCCT-----TEEEEEECSSTTCEEEEET-T----------EEEEESSTTSCCE
T ss_pred cccccCCc-----cccccccccCcceeeEeec-c----------cceEEECCCCcee
Confidence 77888887 6788999999999998543 3 7889998888753
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.18 E-value=0.00015 Score=71.32 Aligned_cols=198 Identities=12% Similarity=0.008 Sum_probs=127.7
Q ss_pred eecccCCCCeEEee-CCCCeEE-EeecCCCeEEEEEeeCceEEEE--ec-cCceeEEEEe-CCEEEEEEecCCCceee--
Q 015220 188 ESESLKWPGFVEFD-DVNGKVL-TYSAQDSIYKVFDLKNYTMLYS--IS-DKNVQEIKIS-PGIMLLIFTKASGHVPL-- 259 (411)
Q Consensus 188 ~~~~l~~PgfvEFD-d~NGkiL-t~~~~ds~ykVWdL~~Ys~iys--Ls-~~~VqeIkIS-dG~~Lai~q~t~~~ipi-- 259 (411)
...-.-||...+.| .++||-| +....++.+.|+|+.+.+.... +. ......+++| ||..+.+.......+|+
T Consensus 65 ~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~ 144 (441)
T d1qnia2 65 LNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPN 144 (441)
T ss_dssp SCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSC
T ss_pred ccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccC
Confidence 34567789988877 3689866 8888999999999999987664 43 5589999999 88876666666666555
Q ss_pred --------------EEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecC-ceeeEEEcccceEEE-eeccccC
Q 015220 260 --------------KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQEN-ENLQILDVRNFELTE-VSRTEFM 321 (411)
Q Consensus 260 --------------KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~-~~LkI~dL~t~e~~~-v~~T~f~ 321 (411)
..++.+|.++..... .+ ..++-++.++++- ++.+.+ +....+|..++..+. +. .+.
T Consensus 145 dg~~~~~~~~~~~~~~iD~~t~~v~~qI~--v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~--v~n 218 (441)
T d1qnia2 145 DGTDFSLDNSYTMFTAIDAETMDVAWQVI--VD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV--VFN 218 (441)
T ss_dssp SSSCCCGGGEEEEEEEEETTTCSEEEEEE--ES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE--EEE
T ss_pred cccccccccccceEEeecCccceeeEEEe--cC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE--eCC
Confidence 678888888887632 22 3456677777765 444533 445555544433221 10 000
Q ss_pred CCceEEEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEE-EEEecCCCCCccccCCce
Q 015220 322 TPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNGK 398 (411)
Q Consensus 322 hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i-iS~~~d~~~~~~~~~~gt 398 (411)
-|.+..+.. ..-|++. .++.+.+|... ..++++..-+.. -.-+.+||||+.+ +|+..+. |
T Consensus 219 ~p~~~~~~~-dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks------PhGv~vSPDGkyl~~~~~~~~----------t 281 (441)
T d1qnia2 219 VERIAAAVK-AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN------PHGLNTSPDGKYFIANGKLSP----------T 281 (441)
T ss_dssp HHHHHHHHH-TTCCBCCTTCCCCEEECSSSCSSEEEECCBSS------CCCEEECTTSCEEEEECTTSS----------B
T ss_pred ccceEEEec-CCCEEEeCCCCcEEEEcccCCceEEEEeCCCC------ccCceECCCCCEEEEeCCcCC----------c
Confidence 111111111 1224444 67788888877 456666655443 3458999999976 4565565 9
Q ss_pred EEEeeeccee
Q 015220 399 LFVSLLMFVT 408 (411)
Q Consensus 399 I~i~~i~tGk 408 (411)
+-|||+.+.+
T Consensus 282 vsv~d~~k~~ 291 (441)
T d1qnia2 282 VSVIAIDKLD 291 (441)
T ss_dssp EEEEEGGGHH
T ss_pred EEEEEeehhh
Confidence 9999997744
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.03 E-value=0.077 Score=48.10 Aligned_cols=203 Identities=11% Similarity=0.060 Sum_probs=110.3
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce-----EEEEecc----------------CceeEEEEe-CCEEEEEE
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLYSISD----------------KNVQEIKIS-PGIMLLIF 250 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-----~iysLs~----------------~~VqeIkIS-dG~~Lai~ 250 (411)
..|..+.+++.+..+.+..+..+.+.||....+. .++++.. -.+..+.+| ||.+|++.
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence 4688888888777655555555555555433221 2333321 156789999 99988888
Q ss_pred ecCCCceeeEEEEec-CCcEEeEee-eccccCCcceeeeeecce--eEE-eecCceeeEEEcccceEEE------eec--
Q 015220 251 TKASGHVPLKILSIE-DGTVLKSFN-HLLHRNKKVDFIEQFNEK--LLV-KQENENLQILDVRNFELTE------VSR-- 317 (411)
Q Consensus 251 q~t~~~ipiKIl~I~-tG~~L~t~~-~LL~h~K~I~FLE~~~ek--llI-KQe~~~LkI~dL~t~e~~~------v~~-- 317 (411)
+...+.+. ++++. +|++...-. .......-..-+..++++ +++ ...++.+.+||+..+.... ++-
T Consensus 163 d~g~d~v~--~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T d1jofa_ 163 DLTANKLW--THRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp ETTTTEEE--EEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred eCCCCEEE--EEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccc
Confidence 77666654 44443 454442211 122233344557777775 334 4467889999987653221 111
Q ss_pred --------cccCCCce--EEEEeec--eeEEEEe-cCe-----EEEEecC--CceeeeeccccccCCCCccceEEEcC-C
Q 015220 318 --------TEFMTPSA--FIFLYEN--QLFLTFR-NRT-----VAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS-D 376 (411)
Q Consensus 318 --------T~f~hpsA--fifLy~s--qlFlSfs-d~t-----I~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~-D 376 (411)
+.+.+..+ -+.+.-. .+|.+-+ +++ |..|+.. |.+.+...-+.-......-+.+.++| |
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred ccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCC
Confidence 11111111 2223222 5566653 222 6666665 55544333222222223456799998 8
Q ss_pred CCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 377 QDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 377 qd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
|++|+...... |+|.+|++..
T Consensus 321 G~~l~va~~~s---------~~v~v~~~~~ 341 (365)
T d1jofa_ 321 DEWMAITDDQE---------GWLEIYRWKD 341 (365)
T ss_dssp TTEEEEECSSS---------CEEEEEEEET
T ss_pred CCEEEEEeCCC---------CeEEEEEEeC
Confidence 99776664332 5999998753
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.84 E-value=0.13 Score=44.76 Aligned_cols=183 Identities=7% Similarity=0.032 Sum_probs=106.8
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
+-++ +||++++....++++..||-..-...+--...++..+.++ ||.+++.....+. +.+|+..+++...+....
T Consensus 33 iAv~-pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~---~~~~~~~~~~~~~~~~~~ 108 (302)
T d2p4oa1 33 LASA-PDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADS---IPVVSLVKSDGTVETLLT 108 (302)
T ss_dssp EEEC-TTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTS---CEEEEEECTTSCEEEEEE
T ss_pred EEEC-CCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCce---EEEEEecccccceeeccc
Confidence 3444 6899999999999877777554333333334689999999 8887766654443 334444443333332223
Q ss_pred cccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeecccc----------CCCceEEEEeeceeEEEE-ecCeE
Q 015220 277 LHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEF----------MTPSAFIFLYENQLFLTF-RNRTV 343 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f----------~hpsAfifLy~sqlFlSf-sd~tI 343 (411)
+...+..+-+...+++.+... ....+..+|..++....+..... .++-.+ ......+|++- .++.|
T Consensus 109 ~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi-~~~~~~l~~~~~~~~~i 187 (302)
T d2p4oa1 109 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-KRFGNFLYVSNTEKMLL 187 (302)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-EEETTEEEEEETTTTEE
T ss_pred cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccc-cccCCceeeecCCCCeE
Confidence 455666777888777775544 45566677777776554322211 111121 22344666666 66777
Q ss_pred EEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 344 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 344 ~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.-++..++.... .+..+........+++++||.+.++-..+.
T Consensus 188 ~~~~~~~~~~~~--~~~~~~~~~~pdgia~d~dG~l~va~~~~~ 229 (302)
T d2p4oa1 188 LRIPVDSTDKPG--EPEIFVEQTNIDDFAFDVEGNLYGATHIYN 229 (302)
T ss_dssp EEEEBCTTSCBC--CCEEEEESCCCSSEEEBTTCCEEEECBTTC
T ss_pred Eecccccccccc--ccccccCCCCCcceEECCCCCEEEEEcCCC
Confidence 777777442211 111111122456799999999887765554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.077 Score=45.31 Aligned_cols=182 Identities=11% Similarity=0.080 Sum_probs=116.0
Q ss_pred CCCCeEEeeCCCCeEEEee-cCCCeEEEEEeeC-ceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc
Q 015220 193 KWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLKN-YTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT 268 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~-~~ds~ykVWdL~~-Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~ 268 (411)
..|-=|-+| .||.+.+.+ .+.+.+..++... +........ ..-..+.++ +|.+ .+.+..+.. +++++-.+++
T Consensus 14 ~~P~~vavd-~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i-~v~d~~~~~--i~~~~~~~~~ 89 (260)
T d1rwia_ 14 LSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTV-YVTDFNNRV--VTLAAGSNNQ 89 (260)
T ss_dssp CCEEEEEEC-TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCE-EEEETTTEE--EEECTTCSCC
T ss_pred CCCCEEEEc-CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCE-EEeeeeece--eeeeeeccce
Confidence 357777787 678876644 4445555554444 333333332 245667887 7764 455555543 4566666666
Q ss_pred EEeEeeeccccCCcceeeeeecc-eeEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEE
Q 015220 269 VLKSFNHLLHRNKKVDFIEQFNE-KLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAV 345 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~~~e-kllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~i 345 (411)
.+..+ ..-....-|++.++ ++++.. .++.+..++...........+.+..|.++.+-...++|++- .++.|..
T Consensus 90 ~~~~~----~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~ 165 (260)
T d1rwia_ 90 TVLPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 165 (260)
T ss_dssp EECCC----CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred eeeee----eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccc
Confidence 55442 22244566888776 455543 66778888888888777777888889887665555888887 7788999
Q ss_pred EecCCceeeeec-cccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 346 WNFRGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 346 Wn~~Gel~~s~e-~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
++.+|.....+. .+.. .-+.|++++||.+.+|-+...
T Consensus 166 ~d~~~~~~~~~~~~~~~-----~p~gi~~d~~g~l~vsd~~~~ 203 (260)
T d1rwia_ 166 LEAESNNQVVLPFTDIT-----APWGIAVDEAGTVYVTEHNTN 203 (260)
T ss_dssp ECTTTCCEEECCCSSCC-----SEEEEEECTTCCEEEEETTTT
T ss_pred cccccceeeeeeccccC-----CCccceeeeeeeeeeeecCCC
Confidence 999987666654 3333 346788999999888876544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.16 Score=41.75 Aligned_cols=188 Identities=10% Similarity=0.030 Sum_probs=107.0
Q ss_pred CCCCeEEEeecCCC---eEEEEEeeCceE-EEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 202 DVNGKVLTYSAQDS---IYKVFDLKNYTM-LYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 202 d~NGkiLt~~~~ds---~ykVWdL~~Ys~-iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
-|||+-|+|...+. ..-+.++.+... ..............| ||..+++.........+..+....+.......
T Consensus 47 SPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (269)
T d2hqsa1 47 SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-- 124 (269)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC--
T ss_pred CCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeee--
Confidence 47888888865533 344445555443 233334477888899 88888888877777777777766666555422
Q ss_pred cccCCcce-eeeeecceeEEee---cCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEE-EecCeEEEEe
Q 015220 277 LHRNKKVD-FIEQFNEKLLVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLT-FRNRTVAVWN 347 (411)
Q Consensus 277 L~h~K~I~-FLE~~~ekllIKQ---e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlS-fsd~tI~iWn 347 (411)
+...... ..-..++.+++.+ +.-.|..+++..++..++.. +.........+ .++.+ -.++...+|.
T Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~ 199 (269)
T d2hqsa1 125 -GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW----EGSQNQDADVSSDGKFMVMVSSNGGQQHIAK 199 (269)
T ss_dssp -CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC----SSSEEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred -ccccccccccccccccceecccccCCceEeeeecccccceeeec----ccccccccccccccceeEEEeecCCceeeeE
Confidence 1111111 1122233344444 34467778888887776422 22333333333 22222 2455555555
Q ss_pred cC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 348 FR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 348 ~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.+ +...+.+. +.. .......||||+.|+--+.. .+.+.|.++++.+|+.
T Consensus 200 ~~~~~~~~~~~~-~~~-----~~~~p~~SPDG~~i~f~s~~-------~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 200 QDLATGGVQVLS-STF-----LDETPSLAPNGTMVIYSSSQ-------GMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EETTTCCEEECC-CSS-----SCEEEEECTTSSEEEEEEEE-------TTEEEEEEEETTSCCE
T ss_pred eecccccceEee-cCc-----cccceEECCCCCEEEEEEcC-------CCCcEEEEEECCCCCE
Confidence 55 44443332 333 34567899999998765543 2346888999887764
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.31 E-value=0.056 Score=52.61 Aligned_cols=231 Identities=9% Similarity=0.092 Sum_probs=134.0
Q ss_pred hhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCccee
Q 015220 109 FALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE 188 (411)
Q Consensus 109 ~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~ 188 (411)
++-..+..-++.|..|++..=.+-.-+..-+|.+.+.+..+++.+++ ...+. +++ . +.
T Consensus 88 V~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~-~~~~~--------v~~--~-----~d------ 145 (441)
T d1qnia2 88 INDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFC-NAEFV--------IPQ--P-----ND------ 145 (441)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEE-EECSC--------EES--S-----CS------
T ss_pred EEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEe-ccCCc--------ccc--c-----Cc------
Confidence 33344666677777777755555444455678888887777765532 11111 110 0 11
Q ss_pred ecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCc----------
Q 015220 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGH---------- 256 (411)
Q Consensus 189 ~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~---------- 256 (411)
|+.+........+.++|..+.+.+.++. +.+...+.++ ||-.+++.....+.
T Consensus 146 ----------------g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~ 209 (441)
T d1qnia2 146 ----------------GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRN 209 (441)
T ss_dssp ----------------SSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCS
T ss_pred ----------------ccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcc
Confidence 1111111122457788888888887776 5578888888 77766665533211
Q ss_pred ----------------------------eeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE-ee--cCceeeEE
Q 015220 257 ----------------------------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV-KQ--ENENLQIL 305 (411)
Q Consensus 257 ----------------------------ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI-KQ--e~~~LkI~ 305 (411)
--+.|+...+.+++.+ ++--|-..-+.+++|+-++ .. .+..+.+|
T Consensus 210 ~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~----IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~ 285 (441)
T d1qnia2 210 DRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY----IPVPKNPHGLNTSPDGKYFIANGKLSPTVSVI 285 (441)
T ss_dssp SBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE----ECCBSSCCCEEECTTSCEEEEECTTSSBEEEE
T ss_pred eEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE----EeCCCCccCceECCCCCEEEEeCCcCCcEEEE
Confidence 1224444455555554 2223445679999998843 43 67899999
Q ss_pred EcccceEEEeeccccCCCceEEE--------Eeec-----eeEEEE-ecCeEEEEecC-------Cc----eeeee----
Q 015220 306 DVRNFELTEVSRTEFMTPSAFIF--------LYEN-----QLFLTF-RNRTVAVWNFR-------GE----LVTSF---- 356 (411)
Q Consensus 306 dL~t~e~~~v~~T~f~hpsAfif--------Ly~s-----qlFlSf-sd~tI~iWn~~-------Ge----l~~s~---- 356 (411)
|+.+-+-. + ...-.+...+.+ |... ..|-|+ -|.+|.-||+. |+ .+-.+
T Consensus 286 d~~k~~~~-~-~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y 363 (441)
T d1qnia2 286 AIDKLDDL-F-EDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQY 363 (441)
T ss_dssp EGGGHHHH-T-TTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred EeehhhhH-h-hccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecccccc
Confidence 99772210 0 011112233333 2222 567777 89999999984 23 22234
Q ss_pred -ccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 357 -EDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 357 -e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
.||.. .......+|||+.|+|+||-..
T Consensus 364 ~~GH~~-----~~~~~t~~pdGk~l~s~~k~s~ 391 (441)
T d1qnia2 364 QPGHNH-----ASLTESRDADGKWLVVLSKFSK 391 (441)
T ss_dssp CEEEEE-----ETTTTSTTCCCCEEEEEESCCG
T ss_pred CCCCCc-----cccccccCCCCcEEEecCcccc
Confidence 56766 6677778999999999966543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.41 Score=39.11 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=93.5
Q ss_pred CCeEEEE--EeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeee
Q 015220 214 DSIYKVF--DLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (411)
Q Consensus 214 ds~ykVW--dL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~ 289 (411)
+..|++| |...+....-++ .+.+.+-+.| ||..||+....+....+-+.+..++....- ..+.........+
T Consensus 16 ~~~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s 91 (269)
T d2hqsa1 16 QFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV----ASFPRHNGAPAFS 91 (269)
T ss_dssp SCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE----ECCSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE----eeeecccccceec
Confidence 3344444 454444333333 3467889999 999999988888888888888888887543 3444555666677
Q ss_pred ccee---EEeecCceeeEE--EcccceEEEeeccccCCCceEEEEeec----ee-EEEEecCeEEEEec--CCceeeeec
Q 015220 290 NEKL---LVKQENENLQIL--DVRNFELTEVSRTEFMTPSAFIFLYEN----QL-FLTFRNRTVAVWNF--RGELVTSFE 357 (411)
Q Consensus 290 ~ekl---lIKQe~~~LkI~--dL~t~e~~~v~~T~f~hpsAfifLy~s----ql-FlSfsd~tI~iWn~--~Gel~~s~e 357 (411)
+++. +..+......++ .....+...+ +. .+..-.....+ .+ +.+..++...+|.. .+.....+.
T Consensus 92 pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~ 167 (269)
T d2hqsa1 92 PDGSKLAFALSKTGSLNLYVMDLASGQIRQV--TD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT 167 (269)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEEC--CC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC
T ss_pred CCCCeeeEeeecCCccceeecccccccceee--ee--ccccccccccccccccceecccccCCceEeeeecccccceeee
Confidence 6665 223333333333 3333444432 22 22222222211 33 33346665555544 454444455
Q ss_pred cccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 358 DHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 358 ~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.+.. ......+||||+.|+..+.+.
T Consensus 168 ~~~~-----~~~~~~~spdg~~~~~~~~~~ 192 (269)
T d2hqsa1 168 WEGS-----QNQDADVSSDGKFMVMVSSNG 192 (269)
T ss_dssp CSSS-----EEEEEEECTTSSEEEEEEECS
T ss_pred cccc-----cccccccccccceeEEEeecC
Confidence 5544 566778999999999888764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.34 E-value=0.81 Score=40.07 Aligned_cols=181 Identities=7% Similarity=-0.064 Sum_probs=102.6
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc--
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-- 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~-- 278 (411)
-.+++|....+..+..++|.+ +..+..+... +|-+++..+ + -+-+++.+||+...-.. .-.
T Consensus 37 i~~~~I~r~d~~~g~~~~~~~----------~~~~~~i~~~~dg~l~va~~---~--gl~~~d~~tg~~~~l~~-~~~~~ 100 (295)
T d2ghsa1 37 ILERELHELHLASGRKTVHAL----------PFMGSALAKISDSKQLIASD---D--GLFLRDTATGVLTLHAE-LESDL 100 (295)
T ss_dssp GGGTEEEEEETTTTEEEEEEC----------SSCEEEEEEEETTEEEEEET---T--EEEEEETTTCCEEEEEC-SSTTC
T ss_pred CCCCEEEEEECCCCeEEEEEC----------CCCcEEEEEecCCCEEEEEe---C--ccEEeecccceeeEEee-eecCC
Confidence 345555555555555555443 2456667766 777666542 2 37789999998654322 111
Q ss_pred cCCcceeeeeecceeE-Eee-----cCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecCC
Q 015220 279 RNKKVDFIEQFNEKLL-VKQ-----ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 279 h~K~I~FLE~~~ekll-IKQ-----e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~G 350 (411)
....++.+.+-+++-+ +.. ....-.+|.+.+++..++... +..|-...+-... .+|++- ..++|..+++++
T Consensus 101 ~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~ 179 (295)
T d2ghsa1 101 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA 179 (295)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence 1223556666666653 332 234567888889988876543 3345554443322 566666 567888888874
Q ss_pred ceeeeeccccc----cCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSFEDHLL----WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~e~H~~----~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+.-........ ....-....+.+.+||.+.++..... .|-.+|- .||.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g----------~V~~~dp-~G~~~ 232 (295)
T d2ghsa1 180 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG----------AVDRYDT-DGNHI 232 (295)
T ss_dssp TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT----------EEEEECT-TCCEE
T ss_pred cccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC----------ceEEecC-CCcEe
Confidence 42211111111 01122467788889998888765553 6777773 45543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.58 Score=44.04 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=85.4
Q ss_pred EeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc-----CceeEEEEe
Q 015220 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KNVQEIKIS 242 (411)
Q Consensus 168 r~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-----~~VqeIkIS 242 (411)
+.+++|++..|++....+- ..| + .++ .+++..+++.+.+||.++.+.-.-++. ..+....+|
T Consensus 3 ~~~tle~~~~~~~~~~~~~-----~~W---~----~~~-~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~S 69 (465)
T d1xfda1 3 KKVTVEDLFSEDFKIHDPE-----AKW---I----SDT-EFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS 69 (465)
T ss_dssp CCCCHHHHTCTTTCCCCCC-----CCB---S----SSS-CBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC
T ss_pred CceeHHHHhCCccccCCCC-----CEE---e----CCC-cEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEEC
Confidence 3567888877765443321 122 1 122 345666677888999988774333332 267788899
Q ss_pred -CCEEEEEEecCCC------ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee-cCceeeEEEcccceEEE
Q 015220 243 -PGIMLLIFTKASG------HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTE 314 (411)
Q Consensus 243 -dG~~Lai~q~t~~------~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ-e~~~LkI~dL~t~e~~~ 314 (411)
||..+++...+.. .-.+-|+++.+|+... +...-.....+++..-+|++--|+- .+++|-+.++.+++.++
T Consensus 70 pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~ 148 (465)
T d1xfda1 70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR 148 (465)
T ss_dssp TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE
T ss_pred CCCCeEEEEEcccceeEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEE
Confidence 8988888765432 3467889999998533 1112233456778888888764432 56788888888887766
Q ss_pred e
Q 015220 315 V 315 (411)
Q Consensus 315 v 315 (411)
+
T Consensus 149 l 149 (465)
T d1xfda1 149 V 149 (465)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=94.90 E-value=1.2 Score=39.79 Aligned_cols=141 Identities=11% Similarity=0.147 Sum_probs=83.2
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEec-----c--------------CceeEEEEe-CCEEEEEE
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS-----D--------------KNVQEIKIS-PGIMLLIF 250 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs-----~--------------~~VqeIkIS-dG~~Lai~ 250 (411)
..|-.+-|+.-..++-+.+..++++.||++.+-+ .++.+. . ....++.+| ||.+|.+.
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 3566789975444455778889999999997654 222221 0 135688999 89988888
Q ss_pred ecCCCc---eeeEEEEec-CCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 251 TKASGH---VPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 251 q~t~~~---ipiKIl~I~-tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
...++. ..|.+|.+. +|.+.... ......+.-.+|.+|
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~~~--------------------------------------~~~~~~~~G~~p~~i 314 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEKQL--------------------------------------FLSPTPTSGGHSNAV 314 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEE--------------------------------------EEEECSSCCTTCCCE
T ss_pred cccCCCccceEEEEEEecCCCceeeEe--------------------------------------EeeEEEcCCCCccEE
Confidence 765543 345555553 33322210 011112344577776
Q ss_pred EEEe--eceeEEEE-ecCeEEEEecCCceee-eeccccccCCCCccceEE
Q 015220 327 IFLY--ENQLFLTF-RNRTVAVWNFRGELVT-SFEDHLLWHPDCNTNNIY 372 (411)
Q Consensus 327 ifLy--~sqlFlSf-sd~tI~iWn~~Gel~~-s~e~H~~~~~~c~~n~i~ 372 (411)
-+-. ..-+|++- .+++|.||+.+++.+. ..+-+.. .|.|-...+.
T Consensus 315 ~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp-~p~~~~~~~w 363 (365)
T d1jofa_ 315 SPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIP-EPGFGMNAIW 363 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECC-STTEEEEEEE
T ss_pred EecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEECC-CCCCCeEEEe
Confidence 6543 23466776 7899999999866443 3333433 5556554443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.77 E-value=1.2 Score=39.07 Aligned_cols=185 Identities=13% Similarity=0.152 Sum_probs=102.1
Q ss_pred CCCeEEeeCCCCeEEEeecCC--CeEEEEEe--eCceEEEEecc----CceeEEEEe-CCEEEEEEecCCCc-eeeEEEE
Q 015220 194 WPGFVEFDDVNGKVLTYSAQD--SIYKVFDL--KNYTMLYSISD----KNVQEIKIS-PGIMLLIFTKASGH-VPLKILS 263 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~d--s~ykVWdL--~~Ys~iysLs~----~~VqeIkIS-dG~~Lai~q~t~~~-ipiKIl~ 263 (411)
.|.=+.|| ++|++++....+ ..-.|+.+ .+-+....+.+ ....++++. +|.+.+.....+.. -.-.++.
T Consensus 83 ~p~gla~~-~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~ 161 (319)
T d2dg1a1 83 NPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY 161 (319)
T ss_dssp SEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred CeeEEEEC-CCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEE
Confidence 46567775 478877765432 23344444 33333333332 256788888 88765553332221 1223444
Q ss_pred ec-CCcEEeEeeeccccCCcceeeeeecce--eEEe-ecCceeeEEEccc-ceEEE-------eeccccCCCceEEEEee
Q 015220 264 IE-DGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVRN-FELTE-------VSRTEFMTPSAFIFLYE 331 (411)
Q Consensus 264 I~-tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~t-~e~~~-------v~~T~f~hpsAfifLy~ 331 (411)
+. +|+.+.....-+. -.+=|...+++ +++. +.+++|..||+.. +.... ...+....|....+=..
T Consensus 162 ~~~dg~~~~~~~~~~~---~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~ 238 (319)
T d2dg1a1 162 VSPDFRTVTPIIQNIS---VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD 238 (319)
T ss_dssp ECTTSCCEEEEEEEES---SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT
T ss_pred EecccceeEEEeeccc---eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCC
Confidence 43 4444443221111 23447777653 6566 4678899998863 11111 11122222333222222
Q ss_pred ceeEEEE-ecCeEEEEecCCceeeeec------cccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 332 NQLFLTF-RNRTVAVWNFRGELVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 332 sqlFlSf-sd~tI~iWn~~Gel~~s~e------~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
-.+|++- .++.|.+++..|+++.+.+ +|.. .+.+++..++.+.++....+.
T Consensus 239 G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~-----~~~~~~~~~~~~~~~~t~~~~ 296 (319)
T d2dg1a1 239 DNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHML-----RSTHPQFIPGTNQLIICSNDI 296 (319)
T ss_dssp CCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSC-----BCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCc-----eeeeEEEeCCCCEEEEEcCCC
Confidence 3789887 7899999999999998764 3444 456778888888887766553
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.43 E-value=0.36 Score=44.30 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=33.3
Q ss_pred CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEE-EEEecCCCCCccccCCceEEEeeec
Q 015220 341 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 341 ~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i-iS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.+..+|..++.-++..-+.+. .-|=|++|||++++ |+.+... +|..+++.
T Consensus 186 ~~g~v~~~~~~~~~~~~~~l~-----~pNGI~~s~d~~~lyVa~t~~~----------~i~~y~~~ 236 (340)
T d1v04a_ 186 AWSFVTYYSPNDVRVVAEGFD-----FANGINISPDGKYVYIAELLAH----------KIHVYEKH 236 (340)
T ss_dssp CCEEEEEECSSCEEEEEEEES-----SEEEEEECTTSSEEEEEEGGGT----------EEEEEEEC
T ss_pred CceeEEEEcCCceEEEcCCCC-----ccceeEECCCCCEEEEEeCCCC----------eEEEEEeC
Confidence 455677777554444444444 78999999999865 5555544 77777765
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.85 E-value=1.3 Score=35.77 Aligned_cols=182 Identities=7% Similarity=0.048 Sum_probs=96.0
Q ss_pred CCCCeEEEeecC----CCeEEEE--EeeCceEEEEeccC---------ceeEEEEe-CCEEEEEEecCCC---ceeeEEE
Q 015220 202 DVNGKVLTYSAQ----DSIYKVF--DLKNYTMLYSISDK---------NVQEIKIS-PGIMLLIFTKASG---HVPLKIL 262 (411)
Q Consensus 202 d~NGkiLt~~~~----ds~ykVW--dL~~Ys~iysLs~~---------~VqeIkIS-dG~~Lai~q~t~~---~ipiKIl 262 (411)
-+||+-|++... +....+| ++.+.+ ...|+.+ .......| ||..|++...... ...+.+.
T Consensus 49 SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~-~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 127 (281)
T d1k32a2 49 FPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRV 127 (281)
T ss_dssp CTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEE
T ss_pred CCCCCEEEEEEeeCCCCCceEEEEEEecCCc-eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeee
Confidence 478998887643 2233344 443443 3445432 33456677 8888887766543 3345566
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeecceeEEee-------------cCceeeEEEcccceEEEeeccccCCCceEEEE
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-------------ENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ-------------e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL 329 (411)
+..++++... . ..+....-...++..+.. .......+....++...+.... ........
T Consensus 128 ~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 199 (281)
T d1k32a2 128 ENDGINFVPL---N---LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS--THVSSPVI 199 (281)
T ss_dssp EGGGTEEEEC---C---SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS--SCCEEEEE
T ss_pred cCCCceeEEe---c---CCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCc--cccceeee
Confidence 6666666443 1 112222222223322221 2233444455555544432222 22222222
Q ss_pred eeceeEEEE-ecC--eEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 330 YENQLFLTF-RNR--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 330 y~sqlFlSf-sd~--tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
....++... .++ .|-++|++|.-++-++.+..+ ..-..||||+.|+ +.++ |.|-+.|+.|
T Consensus 200 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~------~~~~~SpDG~~I~-f~~~----------~~l~~~d~~~ 262 (281)
T d1k32a2 200 VGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDY------YPRHLNTDGRRIL-FSKG----------GSIYIFNPDT 262 (281)
T ss_dssp ETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSS------CEEEEEESSSCEE-EEET----------TEEEEECTTT
T ss_pred eccccceecccccccceEEEeCCCCceEEeecCCCc------ccccCcCCCCEEE-EEeC----------CEEEEEECCC
Confidence 233444444 333 455667777766666655442 2346899999987 4443 4799999999
Q ss_pred eee
Q 015220 407 VTC 409 (411)
Q Consensus 407 Gk~ 409 (411)
|+.
T Consensus 263 g~~ 265 (281)
T d1k32a2 263 EKI 265 (281)
T ss_dssp CCE
T ss_pred CCE
Confidence 985
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.37 E-value=2.3 Score=37.17 Aligned_cols=198 Identities=11% Similarity=0.082 Sum_probs=109.4
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCC-CceeeEEEEecCCcEEeEee
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKAS-GHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~-~~ipiKIl~I~tG~~L~t~~ 274 (411)
-|| .+|.+.......+.+..||..+-+....+. ......++++ ||.+++...... ...-+-.++..++++.....
T Consensus 46 ~~D-~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~ 124 (319)
T d2dg1a1 46 NFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 124 (319)
T ss_dssp EEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred EEC-CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence 465 788888877778877777877765444333 2367788888 888776654432 23334445555555544322
Q ss_pred eccccCCcceeeeeecceeEEeec--------CceeeEEEcccceEEEeeccccCCCceEEEE-eeceeEEEE-ecCeEE
Q 015220 275 HLLHRNKKVDFIEQFNEKLLVKQE--------NENLQILDVRNFELTEVSRTEFMTPSAFIFL-YENQLFLTF-RNRTVA 344 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekllIKQe--------~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL-y~sqlFlSf-sd~tI~ 344 (411)
-......++-+.+.+++-+.-.. ...+.-+|...+....+.. .+..|....+= ..+.+|++= .+++|.
T Consensus 125 -~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~~~I~ 202 (319)
T d2dg1a1 125 -DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLH 202 (319)
T ss_dssp -SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred -CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEecccCCceE
Confidence 12222334445666555433221 1123334443344433322 22344433321 233577776 678999
Q ss_pred EEecC--Cceeeeecccc--ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 345 VWNFR--GELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 345 iWn~~--Gel~~s~e~H~--~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|+++ |.+........ .+...-.-.-+++.+||.+.|+-.... .|-++|- .|+.+
T Consensus 203 ~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g----------~V~~~~p-~G~~l 261 (319)
T d2dg1a1 203 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG----------RVLVFNK-RGYPI 261 (319)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT----------EEEEECT-TSCEE
T ss_pred EEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC----------EEEEECC-CCcEE
Confidence 99987 44443333222 111112345799999999888766543 7888873 57653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=92.70 E-value=2.6 Score=36.01 Aligned_cols=184 Identities=14% Similarity=0.083 Sum_probs=109.5
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCc----eEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Y----s~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
.+|.=+.||. ||++++....++.+.+|++.+- +.+..+++ .....+.+. +|.+++. +..+.. +..++..+
T Consensus 68 ~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~-~~~~~~--i~~~~~~~ 143 (302)
T d2p4oa1 68 GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTA-DSYRGA--IWLIDVVQ 143 (302)
T ss_dssp SEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEE-ETTTTE--EEEEETTT
T ss_pred CCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEee-cccccc--ceeeeccC
Confidence 3466677764 8999998888888888887653 34444443 367788887 7776544 333333 33456666
Q ss_pred CcEEeEeee-------ccccCCcceeeeeecceeEEe-ecCceeeEEEcccceEEEe--eccccCCCceEEEEeeceeEE
Q 015220 267 GTVLKSFNH-------LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEV--SRTEFMTPSAFIFLYENQLFL 336 (411)
Q Consensus 267 G~~L~t~~~-------LL~h~K~I~FLE~~~ekllIK-Qe~~~LkI~dL~t~e~~~v--~~T~f~hpsAfifLy~sqlFl 336 (411)
+....-... ......-.+-+...++.+++. +.+..|.-+|+........ ..+....|..+.+-..-.+|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v 223 (302)
T d2p4oa1 144 PSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG 223 (302)
T ss_dssp TEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE
T ss_pred CcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEE
Confidence 654332110 011112233455566666444 4666666666554322110 012344666666655668888
Q ss_pred EE-ecCeEEEEecCCceee--eeccccccCCCCccceEEE---cCCCCEEEEEec
Q 015220 337 TF-RNRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYI---TSDQDLIISYCK 385 (411)
Q Consensus 337 Sf-sd~tI~iWn~~Gel~~--s~e~H~~~~~~c~~n~i~I---s~Dqd~iiS~~~ 385 (411)
+- .+++|..+++.|+..+ +.+.... ..++++. ++|++.|.-...
T Consensus 224 a~~~~~~V~~i~p~G~~~~~~~~~~~~~-----~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 224 ATHIYNSVVRIAPDRSTTIIAQAEQGVI-----GSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp ECBTTCCEEEECTTCCEEEEECGGGTCT-----TEEEEEECCSTTTTTEEEEEEC
T ss_pred EEcCCCcEEEECCCCCEEEEEecCCCCC-----CceEEEEcCCCCCCCEEEEECC
Confidence 87 7889999999998544 4554443 5678888 788888865544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.60 E-value=1.7 Score=37.94 Aligned_cols=102 Identities=10% Similarity=-0.002 Sum_probs=61.6
Q ss_pred cCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEEecCeEEEEecCCceeeeeccccccCCCCccceEEEcCC
Q 015220 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD 376 (411)
Q Consensus 298 e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSfsd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~D 376 (411)
.+++|.-||..+++.....-. ..|. .++.... .++++ ..+-|..+|+...-++.+.+...-.+..-.|.+.+.+|
T Consensus 38 ~~~~I~r~d~~~g~~~~~~~~--~~~~-~i~~~~dg~l~va-~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~ 113 (295)
T d2ghsa1 38 LERELHELHLASGRKTVHALP--FMGS-ALAKISDSKQLIA-SDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS 113 (295)
T ss_dssp GGTEEEEEETTTTEEEEEECS--SCEE-EEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT
T ss_pred CCCEEEEEECCCCeEEEEECC--CCcE-EEEEecCCCEEEE-EeCccEEeecccceeeEEeeeecCCCcccceeeEECCC
Confidence 456677788888876542111 1233 3333334 45554 45679999999433445544444445556889999999
Q ss_pred CCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 377 QDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 377 qd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|.+.++-.... +..+.-.++.+..|++
T Consensus 114 G~iw~~~~~~~------~~~~~g~l~~~~~g~~ 140 (295)
T d2ghsa1 114 GALWIGTMGRK------AETGAGSIYHVAKGKV 140 (295)
T ss_dssp SCEEEEEEETT------CCTTCEEEEEEETTEE
T ss_pred CCEEEEecccc------ccccceeEeeecCCcE
Confidence 99988866544 2223445566666654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.01 E-value=2.2 Score=40.19 Aligned_cols=151 Identities=14% Similarity=0.221 Sum_probs=100.9
Q ss_pred eEEEEeCCEEEEEEecCCCceeeEEEEecCCc-EEeEee----eccccCCcceeeeeecceeEEeecCceeeEEEcccce
Q 015220 237 QEIKISPGIMLLIFTKASGHVPLKILSIEDGT-VLKSFN----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (411)
Q Consensus 237 qeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~-~L~t~~----~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e 311 (411)
..+++....++-+.+.+.....+-|.|+.++. +++.-. -+.|++++|=.| | .+.+|||+||.+.+
T Consensus 25 ~~~T~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiAL---------r-ag~~LQiFnletK~ 94 (327)
T d1utca2 25 STLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIAL---------K-AGKTLQIFNIEMKS 94 (327)
T ss_dssp TTEECSSSSEEEEEEEETTEEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEE---------E-ETTEEEEEETTTTE
T ss_pred ccEEEecCCEEEEEeccCCCceEEEEECCCCCcceecccchhhhhcCCCCcEEEE---------e-cCCeEEEEehhHhh
Confidence 35667777788888888888999999998766 343100 133444444322 3 38899999999999
Q ss_pred EEEeeccccCCCceEEEE-eec-eeEEEEecCeEEEEecCC--ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 312 LTEVSRTEFMTPSAFIFL-YEN-QLFLTFRNRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 312 ~~~v~~T~f~hpsAfifL-y~s-qlFlSfsd~tI~iWn~~G--el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
..+ +.. -|+-++|- -++ +.+.-..++.|-=|+..| +|+.=|+.|...+ +|-+=+--.++|++.++-..=..
T Consensus 95 klk---s~~-~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~ 169 (327)
T d1utca2 95 KMK---AHT-MTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISA 169 (327)
T ss_dssp EEE---EEE-CSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGT-TCEEEEEEECTTSCEEEEEEEEE
T ss_pred hhc---eEE-cCCCcEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhccccc-CceEEEEEECCCCCEEEEEeEec
Confidence 998 333 34444442 244 444444889999999986 4999999999985 78888888888888654332221
Q ss_pred CCCccccCC-ceEEEeeecc
Q 015220 388 SDDPLAEGN-GKLFVSLLMF 406 (411)
Q Consensus 388 ~~~~~~~~~-gtI~i~~i~t 406 (411)
.++ +. |.|-++..+-
T Consensus 170 -~~~---~i~G~mQLYS~er 185 (327)
T d1utca2 170 -QQN---RVVGAMQLYSVDR 185 (327)
T ss_dssp -ETT---EEEEEEEEEETTT
T ss_pred -CCC---ceeEEEEEEEecc
Confidence 111 22 7777766543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.14 E-value=5.1 Score=38.59 Aligned_cols=166 Identities=13% Similarity=0.070 Sum_probs=98.5
Q ss_pred eCCEEEEEEecCCCceeeEEEEe-cCCcEEeEeeeccccCCcc--------eeeeeecceeEEeecCceeeEEEcccceE
Q 015220 242 SPGIMLLIFTKASGHVPLKILSI-EDGTVLKSFNHLLHRNKKV--------DFIEQFNEKLLVKQENENLQILDVRNFEL 312 (411)
Q Consensus 242 SdG~~Lai~q~t~~~ipiKIl~I-~tG~~L~t~~~LL~h~K~I--------~FLE~~~ekllIKQe~~~LkI~dL~t~e~ 312 (411)
.||.|.+...-.+ .+--++. +||+.++++.......... .=+....+++++...+..|-.+|..||+.
T Consensus 61 ~~g~vyv~t~~~~---~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~ 137 (571)
T d2ad6a1 61 IGDMMYVHSAFPN---NTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp ETTEEEEECSTTT---CEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred ECCEEEEecCCCC---eEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhh
Confidence 3677654432122 2455666 5799999875322211111 12577889999999999999999999987
Q ss_pred EE---eecccc-CCCceEEEEeeceeEEEEe------cCeEEEEecC-Cceeeeeccc----------------------
Q 015220 313 TE---VSRTEF-MTPSAFIFLYENQLFLTFR------NRTVAVWNFR-GELVTSFEDH---------------------- 359 (411)
Q Consensus 313 ~~---v~~T~f-~hpsAfifLy~sqlFlSfs------d~tI~iWn~~-Gel~~s~e~H---------------------- 359 (411)
.- +..... .....--.++...+++..+ .+.|+-+|.+ |+++=.+.-.
T Consensus 138 ~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~ 217 (571)
T d2ad6a1 138 NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred hccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 54 211110 0111111344556666554 5689999999 9988754321
Q ss_pred ----cccCCCCc-------cceEEEcCCCCEEEEEecCCCCCcccc------CCceEEEeeecceeee
Q 015220 360 ----LLWHPDCN-------TNNIYITSDQDLIISYCKADSDDPLAE------GNGKLFVSLLMFVTCK 410 (411)
Q Consensus 360 ----~~~~~~c~-------~n~i~Is~Dqd~iiS~~~d~~~~~~~~------~~gtI~i~~i~tGk~~ 410 (411)
..|..++. =....+.++.+++.-+........... -..++---|+.|||++
T Consensus 218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~ 285 (571)
T d2ad6a1 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK 285 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE
T ss_pred cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhhe
Confidence 12222221 134678889998887766543322211 1367777899999875
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.68 E-value=7.8 Score=33.34 Aligned_cols=190 Identities=11% Similarity=0.017 Sum_probs=114.7
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
=+.||..++++-.+..+++.++..++.+.+.-..+.. ..+..+++. .+. |...+.... .|.+.++.... ..+
T Consensus 40 ~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~--~I~~~~~dg~~-~~~ 115 (263)
T d1npea_ 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRT-IFWTDSQLD--RIEVAKMDGTQ-RRV 115 (263)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTE-EEEEETTTT--EEEEEETTSCS-CEE
T ss_pred EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCe-EEEeccCCC--EEEEEecCCce-EEE
Confidence 3789999999999999999999999987665555543 377888886 444 444444433 45666765433 233
Q ss_pred eeecccc-CCcceeeeee--cceeEEeecCc-e--eeEEEcccceEEEeeccccCCCceEEE-EeeceeEEEE-ecCeEE
Q 015220 273 FNHLLHR-NKKVDFIEQF--NEKLLVKQENE-N--LQILDVRNFELTEVSRTEFMTPSAFIF-LYENQLFLTF-RNRTVA 344 (411)
Q Consensus 273 ~~~LL~h-~K~I~FLE~~--~ekllIKQe~~-~--LkI~dL~t~e~~~v~~T~f~hpsAfif-Ly~sqlFlSf-sd~tI~ 344 (411)
++.. -..+.-|++. .+.++.-+.+. . |.--++-...+..+-.+....|.+... ...+.+|.+= ..++|+
T Consensus 116 ---l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~ 192 (263)
T d1npea_ 116 ---LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (263)
T ss_dssp ---EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ---EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence 1111 2345567774 55677666443 3 444577665555544445556766433 2234677774 678999
Q ss_pred EEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 345 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 345 iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.-+++|.-++++-.-+. +| -.|++ +++.|.-... ++++|..-|..||+-
T Consensus 193 ~~~~~g~~~~~v~~~~~-~P----~~lav--~~~~lYwtd~---------~~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 193 CLNPAQPGRRKVLEGLQ-YP----FAVTS--YGKNLYYTDW---------KTNSVIAMDLAISKE 241 (263)
T ss_dssp EEETTEEEEEEEEECCC-SE----EEEEE--ETTEEEEEET---------TTTEEEEEETTTTEE
T ss_pred EEECCCCCeEEEECCCC-Cc----EEEEE--ECCEEEEEEC---------CCCEEEEEECCCCcc
Confidence 99999875554432221 33 23444 3454433221 224888888888874
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=85.53 E-value=11 Score=32.82 Aligned_cols=179 Identities=11% Similarity=0.094 Sum_probs=100.8
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-cC-----ceeEEEEe-CCEEEEEEecCCC----------c
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK-----NVQEIKIS-PGIMLLIFTKASG----------H 256 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~-----~VqeIkIS-dG~~Lai~q~t~~----------~ 256 (411)
+|.-+-||.-.+++.+.... +.+.++|..+........ .+ ..-++.+. +|.+.++....+. .
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CEEEEEECSSSSEEEEEETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred cceeEEEeCCCCEEEEEECC-CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceecc
Confidence 57778887555566665554 446667776654322111 11 24567888 7877665432210 1
Q ss_pred eeeEEEEec-CCcEEeEeeeccccCCcceeeeeecc------eeEEe-ecCceeeEEEcccc-eEEE------eeccccC
Q 015220 257 VPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNE------KLLVK-QENENLQILDVRNF-ELTE------VSRTEFM 321 (411)
Q Consensus 257 ipiKIl~I~-tG~~L~t~~~LL~h~K~I~FLE~~~e------kllIK-Qe~~~LkI~dL~t~-e~~~------v~~T~f~ 321 (411)
..=.||.+. +|+...-...+- -.+=|.+.++ .+++. +.+.+|..||+... .+.. ++.+..+
T Consensus 151 ~~G~v~~~~~dg~~~~~~~~~~----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 226 (314)
T d1pjxa_ 151 KFGSIYCFTTDGQMIQVDTAFQ----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG 226 (314)
T ss_dssp SCEEEEEECTTSCEEEEEEEES----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred CCceEEEEeecCceeEeeCCcc----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence 112456554 666554332211 1133455443 36666 46778888887653 2211 1222222
Q ss_pred CCceEEEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEE
Q 015220 322 TPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 322 hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
.|..+.+=..-++|++- ..+.|.+|+++ |.++..++.+.. ...++++.+|++.|+-
T Consensus 227 ~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~-----~~t~~afg~d~~~lyV 284 (314)
T d1pjxa_ 227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-----KPSNLHFKPQTKTIFV 284 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-----CEEEEEECTTSSEEEE
T ss_pred cceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCC-----CEEEEEEeCCCCEEEE
Confidence 34333222233888887 78899999999 667777765544 4567889999986544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=84.41 E-value=12 Score=35.68 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=44.9
Q ss_pred CeEEEEEeeCceEEEEeccC--ce-eEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 215 SIYKVFDLKNYTMLYSISDK--NV-QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs~~--~V-qeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
+.+.-||+.+.+.+-+.... .. -.+...+|++. .... --.+.-+|.+||++|+++..--+.+-..-.-| .++
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF-~G~~---dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~-~dG 512 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF-QGTA---AGQMHAYSADKGEALWQFEAQSGIVAAPMTFE-LAG 512 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEE-EECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETT
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEE-EECC---CCcEEEEECCCCcEeEEEECCCCccccCEEEE-ECC
Confidence 45556777777777555533 11 23444477643 3432 24589999999999999885544444332234 345
Q ss_pred eeEE
Q 015220 292 KLLV 295 (411)
Q Consensus 292 kllI 295 (411)
+++|
T Consensus 513 kqyv 516 (560)
T d1kv9a2 513 RQYV 516 (560)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5533
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=83.37 E-value=2.6 Score=33.82 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=42.4
Q ss_pred EEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 335 FLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.+.| +++-|=+.|+.|.-.+.|..+.. ......+||||+.|+--+.... ....+.|-+.+..+|+.
T Consensus 14 ~v~f~~~~dl~~~d~~~g~~~~Lt~~~~-----~~~~p~~SPDG~~iaf~~~~~~----~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 14 RIIFVCCDDLWEHDLKSGSTRKIVSNLG-----VINNARFFPDGRKIAIRVMRGS----SLNTADLYFYNGENGEI 80 (281)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECSSS-----EEEEEEECTTSSEEEEEEEEST----TCCEEEEEEEETTTTEE
T ss_pred EEEEEeCCcEEEEECCCCCEEEEecCCC-----cccCEEECCCCCEEEEEEeeCC----CCCceEEEEEEecCCce
Confidence 3444 55655455888665677888877 6788999999998764333221 12224577777777764
|
| >d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: DNA gyrase A C-terminal domain species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=81.18 E-value=13 Score=33.11 Aligned_cols=116 Identities=13% Similarity=0.142 Sum_probs=68.6
Q ss_pred cceehhhhccccceeeeccccc-------EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhh
Q 015220 105 RDIVFALAQSGVCAAFCRETNQ-------RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~-------~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~ 177 (411)
+|+|+.|++.|++.--+..+-+ -+--+....++.+..++--...|.|++.| +.=+|..+++-+|-.
T Consensus 1 Edvvv~ls~~GyiKR~~~~~~~~q~rg~~g~~~~~~k~~D~v~~~~~~~t~d~ll~fT-------~~G~~~~i~~~~ip~ 73 (304)
T d1suua_ 1 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMIS-------NEGKLYLINAYEIKD 73 (304)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEE-------TTSEEEEEEGGGSCC
T ss_pred CCEEEEEECCCeEEEeeHHHHhhccCCCCCcccccccCCCEEEEEEEecCCCeEEEEe-------chHhhcChhhhhccc
Confidence 5899999999998755433321 12222334455677777777888888877 567888888888866
Q ss_pred CCC-CCCCc------ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE
Q 015220 178 GKP-DAGFA------LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML 228 (411)
Q Consensus 178 gk~-~~~~~------LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i 228 (411)
++. +.|.| |...+.+.. -+..-|.....-++..-.++-+|-.+|..|.-.
T Consensus 74 ~~~~~~G~~i~~l~~l~~~e~i~~-~~~~~~~~~~~~l~~~T~~G~iKr~~l~~f~~~ 130 (304)
T d1suua_ 74 SSRASKGQNISELINLGDQEEILT-IKNSKDLTDDAYLLLTTASGKIARFESTDFKAV 130 (304)
T ss_dssp -------CBGGGTSCCCTTCCEEE-EEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-
T ss_pred ccccccccccceeeeecccccccc-ccccccccccceEEEEEehhhhhhcccchhhcc
Confidence 543 45543 333444431 222222223334555677899999999887543
|