Citrus Sinensis ID: 015227


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
MYVTRPLSLYRNSPSTLSAELPPQEGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSSRETEVGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAATTDGLPPKFLRKKGWELRSSSSSSRSFLRRWNNDKLSEALGLDISLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFVREESRIRHQMRKSVLYKMTLQQWWEKIFSCVNNGGDDANEVNVNVNVQREVSYVYGKQGERDDRGRHLGFVGYRVCDRNCRRRRWGRGGGGGVVGLSLAIDEKMRWLQEEGGWVRGREKELRVSRVEEIAGDNGWQRFGCFVLVESFVLRRMDGSLVLRCDFRHTHRVQCKWE
cccccccccccccccccccccccccccccEEEEEEccccccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEEEEEEccccccccccEEEEEEccEEccEEEccccccccEEEEEEcccccccccccccccccEEEEEEEEccccEEEEEEccccccccHHHHcccEEEEEccccccccccccccccccccccccHHHHHcccccccccccccccEEEEcEEEcEEEEEEccccHHHHHHHccEEEEEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEEEEcccEEEcccccccEEEEEEEcccccccccccccccccEEEEEEEEEEEEEEEEEEEcccccccEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEcccEEEEEEEEEcccEEEccc
ccccccHHHHcccHHHHHcccccccccccEEEEEEcccccccccEEccccccccccccccccccEEEEEEccccccEEccEEEEEEccccccccccEEEEEEccccccEEEEcccHcccccEEEcccccccccccccccccEEEEEEEEcccccEEEEEEEccccccHHHHHHcccEEEEccccccccHHcccccccHHcccccHHHHHHcccccccccccccccEEEEEEEEcEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEEEEEcccEEEEcccccccEEEEEEEccccccccEEEcccccccccEcHEHHEHHHHHHHcccEccccccEEEEEEEEEEcccccccEEEEEEEEEEEEEEEcccEEEEEEEEEccccEEEccc
myvtrplslyrnspstlsaelppqegpysgillitdeeaeaedtfcwgtcklrrvkrlpfpqdkiltvvhsndyqetsvtkvwflpvldqplssnrYYVIRAKgkykgktckssretevgmccfsnvvkdmkpkpfdfrNIYQQFKIhryhrhsffatsaattdglppkflrkkgwelrssssssrSFLRRWNNDKLSealgldislrtqlpslnfpitnkrssvsivgkwycpfvfvreesrIRHQMRKSVLYKMTLQQWWEKIFSCVnnggddanevnVNVNVQREVSYVygkqgerddrgrhlGFVGYRVcdrncrrrrwgrgggggvvGLSLAIDEKMRWLQEEggwvrgrekELRVSRVEeiagdngwqrfGCFVLVESFVlrrmdgslvlrcdfrhthrvqckwe
myvtrplslyrnspstlsaelppqeGPYSGILLITDEEAEAEDTFCWGTCKlrrvkrlpfpqdkiltvvhsndyqetsvtkvwflpvldqplssnryyvirakgkykgktckssretevgMCCFSNvvkdmkpkpfDFRNIYQQFKIHRYHRHSFFatsaattdglppkflrkkgwelrssssssrsflrRWNNDKLSEALgldislrtqlpslnfpitnkrssvsivgKWYCPFVFVREESRIRHQMRKSVLYKMTLQQWWEKIFSCVNNGGDDANEVNVNVNVQREVSyvygkqgerddrgrhlgfvgyrvcdrncrrrrwgrgggggvvglSLAIDEKMRWLqeeggwvrgrekelRVSRVeeiagdngwqrfgCFVLVESFVLRRMDgslvlrcdfrhthrvqckwe
MYVTRPLSLYRNSPSTLSAELPPQEGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSSRETEVGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAATTDGLPPKFLRKKGWElrssssssrsflrrWNNDKLSEALGLDISLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFVREESRIRHQMRKSVLYKMTLQQWWEKIFSCvnnggddanevnvnvnvqrevSYVYGKQGERDDRGRHLGFVGYrvcdrncrrrrwgrgggggvvgLSLAIDEKMRWLQEEGGWVRGREKELRVSRVEEIAGDNGWQRFGCFVLVESFVLRRMDGSLVLRCDFRHTHRVQCKWE
***************************YSGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSSRETEVGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAATTDGLPPKFL*****************LRRWNNDKLSEALGLDISLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFVREESRIRHQMRKSVLYKMTLQQWWEKIFSCVNNGGDDANEVNVNVNVQREVSYVYGKQGERDDRGRHLGFVGYRVCDRNCRR*************LSLAIDEKMRWLQEEGGWVRGREKELRVSRVEEIAGDNGWQRFGCFVLVESFVLRRMDGSLVLRCDFRHTHRVQCK**
MYVTRPLSL*******************SGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYK*******RETEVGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAATTDGLPPKFLRKKGWELRSSSSS*************SEALGLDISLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFVREESRIRHQMRKSVLYKMTLQQWWEKIFSCVNNGGDDANEVNVNVNVQREVSYVYGKQGERDDRGRHLGFVGYRVCDRNCR*********GGVVGLSLAIDEKMRWLQEEGGWVR******************GWQRFGCFVLVESFVLRRMDGSLVLRCDFRHTHRVQCKW*
MYVTRPLSLYRNSPSTLSAELPPQEGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGK**********ETEVGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAATTDGLPPKFLRKKG*************LRRWNNDKLSEALGLDISLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFVREESRIRHQMRKSVLYKMTLQQWWEKIFSCVNNGGDDANEVNVNVNVQREVSYVYGKQGERDDRGRHLGFVGYRVCDRNCRRRRWGRGGGGGVVGLSLAIDEKMRWLQEEGGWVRGREKELRVSRVEEIAGDNGWQRFGCFVLVESFVLRRMDGSLVLRCDFRHTHRVQCKWE
*Y*TRPLSLYRNSPSTLSAELPPQEGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSSRETEVGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAATTDGLPPKFLRKKGWELRSSSSSSRSFLRRWNNDKLSEALGLDISLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFVREESRIRHQMRKSVLYKMTLQQWWEKIFSCVNNGGDDANEVNVNVNVQREVSYVYGKQGERDDRGRHLGFVGYRVCDRNCRRRRWGRGGGGGVVGLSLAIDEKMRWLQEEGGWVRGREKELRVSRVEEIAGDNGWQRFGCFVLVESFVLRRMDGSLVLRCDFRHTHRVQCK**
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MYVTRPLSLYRNSPSTLSAELPPQEGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSSRETEVGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAATTDGLPPKFLRKKGWELRSSSSSSRSFLRRWNNDKLSEALGLDISLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFVREESRIRHQMRKSVLYKMTLQQWWEKIFSCVNNGGDDANEVNVNVNVQREVSYVYGKQGERDDRGRHLGFVGYRVCDRNCRRRRWGRGGGGGVVGLSLAIDEKMRWLQEEGGWVRGREKELRVSRVEEIAGDNGWQRFGCFVLVESFVLRRMDGSLVLRCDFRHTHRVQCKWE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
224079914392 predicted protein [Populus trichocarpa] 0.953 1.0 0.598 1e-140
449445328407 PREDICTED: uncharacterized protein LOC10 0.965 0.975 0.532 1e-120
356573641406 PREDICTED: uncharacterized protein LOC10 0.953 0.965 0.524 1e-118
297840399414 hypothetical protein ARALYDRAFT_475167 [ 0.970 0.963 0.511 1e-111
15220537421 uncharacterized protein [Arabidopsis tha 0.970 0.947 0.501 1e-104
255581344301 conserved hypothetical protein [Ricinus 0.727 0.993 0.613 1e-104
225423790395 PREDICTED: uncharacterized protein LOC10 0.931 0.969 0.477 1e-98
359473025391 PREDICTED: uncharacterized protein LOC10 0.929 0.976 0.492 3e-97
255546939389 conserved hypothetical protein [Ricinus 0.934 0.987 0.475 2e-95
224101603384 predicted protein [Populus trichocarpa] 0.929 0.994 0.463 8e-93
>gi|224079914|ref|XP_002305971.1| predicted protein [Populus trichocarpa] gi|118484298|gb|ABK94028.1| unknown [Populus trichocarpa] gi|222848935|gb|EEE86482.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/411 (59%), Positives = 309/411 (75%), Gaps = 19/411 (4%)

Query: 1   MYVTRPLSLYRNSPSTLSAELPPQEGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPF 60
           MYVTRPLSLYRN PS LS E  P EGP++G L+ITDEEAEA++T+CWG  K RRVK+LPF
Sbjct: 1   MYVTRPLSLYRNFPSALSRE--PPEGPHTGYLVITDEEAEAQETYCWGIRKSRRVKKLPF 58

Query: 61  PQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSSRETEVG 120
           PQDKIL+VVHS+D++ET V K WF+PVLDQPLSSN YYVI+AKG +KG+ C  SRE ++G
Sbjct: 59  PQDKILSVVHSSDHEETIVKKAWFIPVLDQPLSSNCYYVIKAKGSHKGQACTCSREMDMG 118

Query: 121 MCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAATTDGLPPKFLRKKGWELRS 180
           + CF +V+ D+KPKPFD+RNIYQQFKIHR+H  SFF+ S A  DG PP+FLRKKGWE+R 
Sbjct: 119 LWCFKSVINDIKPKPFDYRNIYQQFKIHRHHGKSFFSKSLA-PDGFPPRFLRKKGWEVR- 176

Query: 181 SSSSSRSFLRRWNNDKLSEALGLDISLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFVRE 240
              SSRS+       +LSEALGLD+ LR+QLPS +FP++ K SS   VG+WYCPFV VRE
Sbjct: 177 ---SSRSY-----KFQLSEALGLDVPLRSQLPSFDFPLSTKSSSRVTVGRWYCPFVLVRE 228

Query: 241 ESRIRHQMRKSVLYKMTLQQWWEKIFSCVNNGGDDANEVNVNVNVQREVSYVYGKQGERD 300
           E RIR QM++++LY MTL+Q+W++I+SC N   +  + + V+VNVQRE+  V+G +  RD
Sbjct: 229 EPRIREQMKRTMLYSMTLEQYWKEIYSCENANNEAESTIMVSVNVQREMDLVFGMEATRD 288

Query: 301 DRGRHLGFVGYRVCDRNCRRRRWGRGGGGGVVGLSLAIDEKMRWLQEEGGWVRGREKELR 360
               H G + YRV  RN         G G  VG+S A  EKM+W+QE GGW+ G +    
Sbjct: 289 GGVSHGGVIWYRVVSRNS-------SGRGFKVGVSAATVEKMKWVQEAGGWIDGGDVNET 341

Query: 361 VSRVEEIAGDNGWQRFGCFVLVESFVLRRMDGSLVLRCDFRHTHRVQCKWE 411
           V R  EI  +NGW++FGC+ LVESFVLRRMDGSLVLRCDFRHTH+++ KWE
Sbjct: 342 VERAVEIRSENGWRKFGCYALVESFVLRRMDGSLVLRCDFRHTHKIKSKWE 392




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445328|ref|XP_004140425.1| PREDICTED: uncharacterized protein LOC101206442 [Cucumis sativus] gi|449481269|ref|XP_004156133.1| PREDICTED: uncharacterized LOC101206442 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356573641|ref|XP_003554966.1| PREDICTED: uncharacterized protein LOC100811822 [Glycine max] Back     alignment and taxonomy information
>gi|297840399|ref|XP_002888081.1| hypothetical protein ARALYDRAFT_475167 [Arabidopsis lyrata subsp. lyrata] gi|297333922|gb|EFH64340.1| hypothetical protein ARALYDRAFT_475167 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15220537|ref|NP_176354.1| uncharacterized protein [Arabidopsis thaliana] gi|4585877|gb|AAD25550.1|AC005850_7 Hypothetical protein [Arabidopsis thaliana] gi|332195740|gb|AEE33861.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255581344|ref|XP_002531482.1| conserved hypothetical protein [Ricinus communis] gi|223528909|gb|EEF30906.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225423790|ref|XP_002280073.1| PREDICTED: uncharacterized protein LOC100261208 [Vitis vinifera] gi|297737921|emb|CBI27122.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473025|ref|XP_003631233.1| PREDICTED: uncharacterized protein LOC100266416 [Vitis vinifera] gi|297737922|emb|CBI27123.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546939|ref|XP_002514527.1| conserved hypothetical protein [Ricinus communis] gi|223546131|gb|EEF47633.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224101603|ref|XP_002312349.1| predicted protein [Populus trichocarpa] gi|222852169|gb|EEE89716.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
TAIR|locus:2200913421 AT1G61600 "AT1G61600" [Arabido 0.973 0.950 0.458 2.3e-94
TAIR|locus:2009942387 AT1G13480 "AT1G13480" [Arabido 0.603 0.640 0.423 1.8e-64
TAIR|locus:2009977381 AT1G13540 "AT1G13540" [Arabido 0.600 0.648 0.397 8.8e-61
TAIR|locus:2010002387 AT1G13520 "AT1G13520" [Arabido 0.600 0.638 0.390 3.8e-60
TAIR|locus:2010017385 AT1G13530 "AT1G13530" [Arabido 0.598 0.638 0.407 6.9e-59
TAIR|locus:2009972386 AT1G13500 "AT1G13500" [Arabido 0.605 0.645 0.408 7.8e-58
TAIR|locus:2009927379 AT1G13470 "AT1G13470" [Arabido 0.593 0.643 0.395 1.6e-57
TAIR|locus:2009987380 AT1G13510 "AT1G13510" [Arabido 0.598 0.647 0.382 2.9e-54
TAIR|locus:2009957363 AT1G13490 "AT1G13490" [Arabido 0.301 0.341 0.402 4e-51
TAIR|locus:2009962388 AT1G13550 "AT1G13550" [Arabido 0.596 0.631 0.391 5.3e-49
TAIR|locus:2200913 AT1G61600 "AT1G61600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 198/432 (45%), Positives = 257/432 (59%)

Query:     1 MYVTRPLSLYRNSPSTLSAELPPQEGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPF 60
             MYVTR LS +R    TLS E P  EGP+SG+L+ITDEEAE EDTFC+G C   ++++LP 
Sbjct:     1 MYVTRTLSQFRKYQKTLSEESP--EGPFSGVLVITDEEAETEDTFCFGMCTRTKIEKLPL 58

Query:    61 PQDKILTVVH--SNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSSRETE 118
             PQDKIL+VVH  S+  +ETSV KV F+P LDQPLSSNRYYV+ A+G++KGK    SRE E
Sbjct:    59 PQDKILSVVHLDSSGNRETSVKKVLFIPALDQPLSSNRYYVVHARGRHKGKVSVCSREIE 118

Query:   119 VGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAATTDGLPPKFLRKKGWEX 178
              G+CCF +++ D KPKP D RNIYQ  KI+R+H  +F+A S A  DG PP FL+KKGWE 
Sbjct:   119 KGVCCFPDILHDKKPKPLDPRNIYQTVKINRHHDRTFYAKSVAP-DGTPPTFLKKKGWEL 177

Query:   179 XXXXXXXXXXXXXWNNDKLSEALGLDISLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFV 238
                           +  +  EALGLD  LR +LP+  FP++  RS   IVG+WYCPF+FV
Sbjct:   178 RTSRSL--------HPRRPREALGLDEELRARLPAFGFPVSTIRSGSVIVGEWYCPFMFV 229

Query:   239 REESRIRHQMRKSVLYKMTLQQWWEKIFSCXXXXXXXXXXXXXX------XXXXXXXSYV 292
             +E   +  QMRKS+ Y++TL Q+WE+I+ C                           +YV
Sbjct:   230 KENCSVSQQMRKSMFYRITLSQYWERIYHCGNNDLDENNDENEEEVVRVEANVVREANYV 289

Query:   293 YGKQGERDDRGRHLGFVGYXXXXXXXXXXXXXXXXXXXX-XXLSLAIDEKMRWLQEEGGW 351
              G +  + ++  H GF  Y                       LS  + E+MR + EEGGW
Sbjct:   290 KGMEAVKGEKEGHGGFYWYRQVQGPRGPGERRRKTGLRSPVGLSFVVVERMRRVMEEGGW 349

Query:   352 VRGREKELRVSRVEEIA------------GDNGWQRFGCFVLVESFVLRRMDGSLVLRCD 399
             V G  K +RV R E I              D  W+RFGC+VLVESF LRR DG L+++C 
Sbjct:   350 VGGGRKVVRVERDEPIRVCRRDGRNMNGNNDRNWRRFGCYVLVESFGLRRADGVLLVKCV 409

Query:   400 FRHTHRVQCKWE 411
             FRHT+R++C WE
Sbjct:   410 FRHTNRLRCNWE 421




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016020 "membrane" evidence=IDA
TAIR|locus:2009942 AT1G13480 "AT1G13480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009977 AT1G13540 "AT1G13540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010002 AT1G13520 "AT1G13520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010017 AT1G13530 "AT1G13530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009972 AT1G13500 "AT1G13500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009927 AT1G13470 "AT1G13470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009987 AT1G13510 "AT1G13510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009957 AT1G13490 "AT1G13490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009962 AT1G13550 "AT1G13550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00040887
SubName- Full=Putative uncharacterized protein; (392 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
pfam06880104 pfam06880, DUF1262, Protein of unknown function (D 1e-40
>gnl|CDD|219214 pfam06880, DUF1262, Protein of unknown function (DUF1262) Back     alignment and domain information
 Score =  139 bits (352), Expect = 1e-40
 Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 25  EGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVH---SNDYQETSVTK 81
           EGP SG+L+I DEE+   +T C+G C   RV+ LPFPQ++ LTV +     +   T    
Sbjct: 1   EGPNSGVLVIQDEESGTTETCCFGLCLDSRVRGLPFPQNRKLTVRYDDGHGNRTTTYRDA 60

Query: 82  VWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSSRETEVGMCCF 124
           V F+PVL QPLSSNRYY +RA+GK+ GK    SRE +   CCF
Sbjct: 61  VVFIPVLGQPLSSNRYYAVRARGKHSGKVSACSREEDRVTCCF 103


This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region. Length = 104

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 411
PF06880104 DUF1262: Protein of unknown function (DUF1262); In 100.0
PF05431199 Toxin_10: Insecticidal Crystal Toxin, P42 ; InterP 96.74
>PF06880 DUF1262: Protein of unknown function (DUF1262); InterPro: IPR010683 This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana Back     alignment and domain information
Probab=100.00  E-value=6.1e-58  Score=387.75  Aligned_cols=101  Identities=56%  Similarity=0.924  Sum_probs=98.1

Q ss_pred             CCCCceEEEEEcccccccCceeeeecccCcccCCCCCCcceEEEEEecCc---cceeeeeEEEeecCCCCCCCCceEEEE
Q 015227           25 EGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDY---QETSVTKVWFLPVLDQPLSSNRYYVIR  101 (411)
Q Consensus        25 eGPnSG~LVI~Dee~~~~~t~CfGlc~~~~v~~LPFPQN~~LtV~~~~~g---~~t~~d~V~FIPVl~QPLSSNrYYvi~  101 (411)
                      ||||||||||||||+++.+|||||+|++++|++||||||++|||+|+++.   ++||.|+|||||||||||||||||||+
T Consensus         1 EGPnSG~LVIqDee~~~~~t~CfG~c~~~~v~~LPFPQN~~Ltv~~~~~~~~~~~t~~d~V~FIPVl~QPLSSnrYYvi~   80 (104)
T PF06880_consen    1 EGPNSGYLVIQDEEAETTETCCFGLCKDTRVRGLPFPQNKNLTVRYSSGHGENTTTYSDPVVFIPVLNQPLSSNRYYVIR   80 (104)
T ss_pred             CCCCceEEEEEccccCccccEEeeEcCCCccccCCCCCCCEEEEEEccCCCccceeecccEEEEEcCCCcCcCCcEEEEE
Confidence            89999999999999999888999999999999999999999999998873   678999999999999999999999999


Q ss_pred             ecceecceeecccccccceeeEee
Q 015227          102 AKGKYKGKTCKSSRETEVGMCCFS  125 (411)
Q Consensus       102 ~~Gkh~G~a~~~skEeD~~tcCf~  125 (411)
                      |+|||+|+|+||||||||++||||
T Consensus        81 ~~Gkh~G~a~~~skEeD~~tcCFC  104 (104)
T PF06880_consen   81 RKGKHKGEASACSKEEDMTTCCFC  104 (104)
T ss_pred             ecccccceeeccccccccceeecC
Confidence            999999999999999999999998



Note that some family members contain more than one copy of this region.

>PF05431 Toxin_10: Insecticidal Crystal Toxin, P42 ; InterPro: IPR008872 This domain consists of Bacillus insecticidal crystal toxins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00